Query 007863
Match_columns 587
No_of_seqs 296 out of 2373
Neff 11.4
Searched_HMMs 46136
Date Thu Mar 28 16:21:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0211 Protein phosphatase 2A 100.0 5.8E-51 1.2E-55 402.8 44.9 580 6-585 79-667 (759)
2 KOG2171 Karyopherin (importin) 100.0 7.4E-31 1.6E-35 262.1 51.6 545 8-560 3-613 (1075)
3 KOG2171 Karyopherin (importin) 100.0 1.3E-29 2.9E-34 253.2 51.4 573 13-586 83-918 (1075)
4 KOG0211 Protein phosphatase 2A 100.0 9.1E-32 2E-36 267.0 32.5 519 66-585 101-628 (759)
5 KOG2023 Nuclear transport rece 100.0 1.4E-29 3.1E-34 236.7 36.3 572 7-586 11-736 (885)
6 KOG0213 Splicing factor 3b, su 100.0 4.4E-25 9.5E-30 209.2 42.3 559 10-581 364-1064(1172)
7 KOG1241 Karyopherin (importin) 100.0 9E-24 2E-28 201.5 43.4 525 59-585 102-766 (859)
8 KOG2023 Nuclear transport rece 99.9 2.5E-25 5.4E-30 208.6 28.5 492 85-587 13-596 (885)
9 KOG1241 Karyopherin (importin) 99.9 2E-23 4.4E-28 199.1 41.3 571 14-586 95-815 (859)
10 KOG1824 TATA-binding protein-i 99.9 7.5E-22 1.6E-26 192.3 43.0 566 13-582 9-722 (1233)
11 PLN03200 cellulose synthase-in 99.9 1.1E-21 2.5E-26 212.4 44.2 560 10-583 190-812 (2102)
12 COG5181 HSH155 U2 snRNP splice 99.9 2.1E-21 4.6E-26 180.8 36.0 559 10-581 169-869 (975)
13 PLN03200 cellulose synthase-in 99.9 1.4E-20 3.1E-25 204.0 47.3 562 10-582 100-723 (2102)
14 KOG0213 Splicing factor 3b, su 99.9 3.7E-20 8E-25 176.1 42.5 529 18-553 485-1117(1172)
15 KOG1242 Protein containing ada 99.9 2.4E-20 5.2E-25 176.3 33.9 465 88-560 19-499 (569)
16 PF01602 Adaptin_N: Adaptin N 99.9 3.7E-20 8.1E-25 189.5 38.5 405 158-582 109-524 (526)
17 KOG1242 Protein containing ada 99.9 1.6E-19 3.5E-24 170.7 38.0 520 50-578 19-560 (569)
18 COG5181 HSH155 U2 snRNP splice 99.9 5E-19 1.1E-23 165.2 39.2 553 18-587 255-917 (975)
19 KOG1824 TATA-binding protein-i 99.9 6.4E-18 1.4E-22 165.3 43.5 501 84-586 45-684 (1233)
20 PRK09687 putative lyase; Provi 99.9 3.9E-20 8.5E-25 167.6 22.8 254 281-579 24-279 (280)
21 PRK13800 putative oxidoreducta 99.9 8E-20 1.7E-24 194.4 26.5 275 242-579 622-896 (897)
22 COG5215 KAP95 Karyopherin (imp 99.9 1.5E-16 3.2E-21 147.8 41.5 545 15-561 100-731 (858)
23 PF01602 Adaptin_N: Adaptin N 99.8 9.6E-18 2.1E-22 171.7 37.2 462 99-584 19-485 (526)
24 PRK09687 putative lyase; Provi 99.8 3.2E-19 6.9E-24 161.7 21.8 257 239-540 21-279 (280)
25 PRK13800 putative oxidoreducta 99.8 8.7E-19 1.9E-23 186.5 27.8 274 204-540 623-896 (897)
26 COG5215 KAP95 Karyopherin (imp 99.8 7.8E-16 1.7E-20 143.0 42.8 527 58-586 105-715 (858)
27 PTZ00429 beta-adaptin; Provisi 99.8 7.7E-16 1.7E-20 156.2 46.8 417 136-577 116-541 (746)
28 KOG0212 Uncharacterized conser 99.8 6.7E-16 1.5E-20 143.3 30.6 377 169-546 6-409 (675)
29 KOG1240 Protein kinase contain 99.8 3.3E-17 7.1E-22 164.5 23.4 269 177-445 437-744 (1431)
30 KOG0915 Uncharacterized conser 99.8 5.5E-15 1.2E-19 152.3 39.7 496 84-586 816-1431(1702)
31 PTZ00429 beta-adaptin; Provisi 99.8 6.4E-14 1.4E-18 142.5 44.3 461 92-580 38-505 (746)
32 KOG0915 Uncharacterized conser 99.7 8.8E-15 1.9E-19 150.8 34.3 407 160-567 815-1330(1702)
33 KOG1240 Protein kinase contain 99.7 2.2E-16 4.7E-21 158.7 19.1 283 242-524 423-745 (1431)
34 KOG0212 Uncharacterized conser 99.7 1.2E-13 2.7E-18 128.5 35.5 423 95-519 9-459 (675)
35 KOG0166 Karyopherin (importin) 99.7 3.4E-14 7.3E-19 134.4 29.8 366 213-580 77-484 (514)
36 KOG0166 Karyopherin (importin) 99.6 1.4E-13 3E-18 130.3 24.3 341 243-583 68-437 (514)
37 KOG4224 Armadillo repeat prote 99.6 5.5E-14 1.2E-18 123.9 18.2 384 162-546 84-496 (550)
38 KOG1943 Beta-tubulin folding c 99.6 6.5E-10 1.4E-14 112.2 44.9 424 159-585 337-840 (1133)
39 KOG1060 Vesicle coat complex A 99.6 3.2E-11 6.9E-16 117.1 33.9 386 165-574 110-563 (968)
40 PF10508 Proteasom_PSMB: Prote 99.6 3.8E-11 8.2E-16 119.6 35.5 374 207-581 43-461 (503)
41 KOG1060 Vesicle coat complex A 99.5 3.8E-11 8.2E-16 116.6 32.3 396 161-578 69-529 (968)
42 KOG4224 Armadillo repeat prote 99.5 2.9E-12 6.3E-17 113.2 21.7 375 207-582 90-493 (550)
43 KOG1061 Vesicle coat complex A 99.5 6.3E-11 1.4E-15 115.8 30.6 435 121-574 46-520 (734)
44 COG5240 SEC21 Vesicle coat com 99.5 1.1E-09 2.3E-14 103.1 35.9 472 83-581 62-554 (898)
45 PF10508 Proteasom_PSMB: Prote 99.5 7.9E-10 1.7E-14 110.3 35.6 360 143-503 56-461 (503)
46 COG5064 SRP1 Karyopherin (impo 99.4 6.3E-11 1.4E-15 103.9 20.4 339 241-579 114-493 (526)
47 KOG1943 Beta-tubulin folding c 99.4 1.1E-08 2.3E-13 103.8 38.7 456 86-544 341-882 (1133)
48 COG5240 SEC21 Vesicle coat com 99.4 4.8E-09 1.1E-13 98.7 31.7 294 197-503 259-554 (898)
49 KOG1062 Vesicle coat complex A 99.4 1.6E-08 3.6E-13 99.2 36.4 244 287-541 320-579 (866)
50 KOG1062 Vesicle coat complex A 99.4 7.1E-09 1.5E-13 101.7 33.9 434 125-575 103-574 (866)
51 KOG1020 Sister chromatid cohes 99.4 6.2E-08 1.3E-12 101.5 42.0 490 90-582 820-1405(1692)
52 KOG1248 Uncharacterized conser 99.4 6.4E-07 1.4E-11 92.4 48.1 344 239-585 516-901 (1176)
53 KOG1243 Protein kinase [Genera 99.3 3.5E-11 7.7E-16 116.4 16.8 255 329-585 264-518 (690)
54 COG1413 FOG: HEAT repeat [Ener 99.3 9.2E-10 2E-14 105.4 26.7 248 163-464 43-303 (335)
55 PF12348 CLASP_N: CLASP N term 99.3 1E-10 2.3E-15 105.1 18.6 187 397-586 7-210 (228)
56 COG1413 FOG: HEAT repeat [Ener 99.3 5.1E-10 1.1E-14 107.2 24.4 278 241-580 43-333 (335)
57 TIGR02270 conserved hypothetic 99.3 5.7E-10 1.2E-14 106.4 22.8 207 321-580 88-294 (410)
58 KOG1059 Vesicle coat complex A 99.3 7.8E-07 1.7E-11 86.6 43.2 401 154-582 135-577 (877)
59 KOG2259 Uncharacterized conser 99.3 5.2E-09 1.1E-13 100.2 26.6 278 251-541 168-473 (823)
60 KOG1059 Vesicle coat complex A 99.2 6.6E-07 1.4E-11 87.1 38.9 503 11-541 38-575 (877)
61 KOG1248 Uncharacterized conser 99.2 5.1E-06 1.1E-10 86.0 47.3 178 407-584 664-858 (1176)
62 COG5064 SRP1 Karyopherin (impo 99.2 1.6E-09 3.6E-14 95.2 19.3 344 160-504 69-443 (526)
63 KOG1061 Vesicle coat complex A 99.2 1.1E-08 2.4E-13 100.5 26.7 176 318-503 349-527 (734)
64 KOG2259 Uncharacterized conser 99.2 4.6E-09 9.9E-14 100.6 23.1 249 160-422 195-471 (823)
65 TIGR02270 conserved hypothetic 99.2 4.3E-09 9.4E-14 100.5 22.8 241 203-504 55-296 (410)
66 KOG1020 Sister chromatid cohes 99.2 3E-06 6.5E-11 89.5 44.3 487 7-505 813-1406(1692)
67 KOG1078 Vesicle coat complex C 99.2 2.1E-07 4.4E-12 91.5 32.5 489 62-581 39-531 (865)
68 KOG1991 Nuclear transport rece 99.2 1.1E-05 2.3E-10 82.1 44.4 348 158-507 84-535 (1010)
69 PF12348 CLASP_N: CLASP N term 99.1 6.3E-09 1.4E-13 93.5 19.5 187 281-470 8-211 (228)
70 KOG1058 Vesicle coat complex C 99.1 1.7E-06 3.7E-11 84.7 33.9 358 205-585 102-466 (948)
71 KOG1820 Microtubule-associated 99.1 1.5E-08 3.3E-13 103.4 20.7 358 203-586 64-447 (815)
72 KOG1077 Vesicle coat complex A 99.1 7.6E-06 1.6E-10 79.7 36.5 456 91-578 116-583 (938)
73 KOG2274 Predicted importin 9 [ 99.1 3.1E-05 6.7E-10 77.9 42.4 212 370-583 462-690 (1005)
74 KOG1991 Nuclear transport rece 99.0 3.7E-05 8.1E-10 78.3 43.4 131 337-468 390-535 (1010)
75 KOG1243 Protein kinase [Genera 99.0 7.7E-09 1.7E-13 100.6 16.0 255 289-546 263-518 (690)
76 COG5096 Vesicle coat complex, 99.0 4.2E-06 9E-11 84.5 35.3 141 162-309 54-195 (757)
77 KOG1078 Vesicle coat complex C 99.0 6.3E-06 1.4E-10 81.4 35.3 423 90-542 104-531 (865)
78 KOG1058 Vesicle coat complex C 99.0 4.1E-06 8.9E-11 82.1 32.3 329 158-504 129-463 (948)
79 PF12460 MMS19_C: RNAPII trans 99.0 4E-06 8.6E-11 82.2 33.3 306 254-561 56-414 (415)
80 KOG4535 HEAT and armadillo rep 98.9 5.2E-06 1.1E-10 77.2 29.1 290 216-505 269-604 (728)
81 KOG2062 26S proteasome regulat 98.9 3.7E-05 8.1E-10 75.5 35.7 161 396-569 518-681 (929)
82 KOG1992 Nuclear export recepto 98.9 8.5E-05 1.8E-09 74.1 36.6 535 6-546 2-671 (960)
83 COG5096 Vesicle coat complex, 98.9 3.7E-06 8.1E-11 84.8 27.8 264 211-487 28-296 (757)
84 KOG1992 Nuclear export recepto 98.9 3.8E-05 8.2E-10 76.5 33.9 389 158-582 83-527 (960)
85 KOG4535 HEAT and armadillo rep 98.8 4.3E-06 9.4E-11 77.7 25.2 493 18-582 5-603 (728)
86 KOG1077 Vesicle coat complex A 98.8 0.00016 3.5E-09 70.8 36.8 450 60-541 124-585 (938)
87 KOG1820 Microtubule-associated 98.8 1.8E-06 3.9E-11 88.7 24.9 198 236-437 248-454 (815)
88 PF12755 Vac14_Fab1_bd: Vacuol 98.8 8.9E-08 1.9E-12 70.9 10.2 88 491-579 2-93 (97)
89 KOG2137 Protein kinase [Signal 98.8 1.2E-06 2.5E-11 86.2 20.0 231 332-565 286-520 (700)
90 PF12460 MMS19_C: RNAPII trans 98.7 0.00015 3.2E-09 71.3 34.7 202 263-466 169-395 (415)
91 KOG0413 Uncharacterized conser 98.7 0.00032 6.8E-09 71.3 35.7 183 88-271 474-686 (1529)
92 PF12755 Vac14_Fab1_bd: Vacuol 98.7 2.5E-07 5.3E-12 68.5 11.0 83 296-378 2-88 (97)
93 PF05804 KAP: Kinesin-associat 98.7 0.0001 2.2E-09 75.4 31.3 368 206-583 254-650 (708)
94 PF05804 KAP: Kinesin-associat 98.7 4E-05 8.7E-10 78.2 28.4 368 166-544 253-650 (708)
95 KOG1293 Proteins containing ar 98.7 0.00025 5.5E-09 69.2 31.9 404 173-580 63-531 (678)
96 KOG2274 Predicted importin 9 [ 98.7 0.00076 1.6E-08 68.4 46.2 198 363-563 496-718 (1005)
97 PF13646 HEAT_2: HEAT repeats; 98.6 1.6E-07 3.4E-12 70.0 7.8 86 477-578 1-88 (88)
98 KOG2032 Uncharacterized conser 98.6 9.1E-05 2E-09 69.7 27.1 258 318-582 257-531 (533)
99 KOG4413 26S proteasome regulat 98.6 9.3E-05 2E-09 65.7 25.4 320 222-544 63-440 (524)
100 KOG2137 Protein kinase [Signal 98.6 5.3E-06 1.1E-10 81.7 19.5 233 292-527 285-521 (700)
101 KOG0413 Uncharacterized conser 98.6 0.00099 2.2E-08 67.9 34.7 188 161-349 470-686 (1529)
102 KOG0414 Chromosome condensatio 98.6 0.0018 3.9E-08 67.8 40.0 143 434-582 917-1064(1251)
103 KOG0168 Putative ubiquitin fus 98.5 0.00022 4.8E-09 71.5 28.7 399 163-566 168-656 (1051)
104 PF12717 Cnd1: non-SMC mitotic 98.5 1.3E-05 2.8E-10 68.3 18.0 106 216-324 2-107 (178)
105 KOG2062 26S proteasome regulat 98.5 7E-06 1.5E-10 80.4 17.9 129 205-347 522-652 (929)
106 PF13646 HEAT_2: HEAT repeats; 98.5 4.8E-07 1E-11 67.3 8.1 26 321-346 33-58 (88)
107 PF04826 Arm_2: Armadillo-like 98.5 2.6E-05 5.6E-10 69.7 19.3 188 322-509 15-210 (254)
108 PF05918 API5: Apoptosis inhib 98.5 0.00042 9E-09 68.3 29.0 290 208-505 29-346 (556)
109 PF04826 Arm_2: Armadillo-like 98.5 1.5E-05 3.2E-10 71.2 17.5 213 361-573 15-253 (254)
110 KOG1822 Uncharacterized conser 98.5 0.0039 8.4E-08 68.6 37.9 437 144-580 803-1384(2067)
111 PF12717 Cnd1: non-SMC mitotic 98.5 2E-05 4.2E-10 67.2 17.2 99 410-511 1-99 (178)
112 KOG4653 Uncharacterized conser 98.4 6.2E-05 1.3E-09 75.5 21.6 222 363-586 732-968 (982)
113 KOG2032 Uncharacterized conser 98.4 0.0004 8.6E-09 65.5 25.3 257 240-503 257-530 (533)
114 cd00020 ARM Armadillo/beta-cat 98.4 1.3E-06 2.9E-11 69.6 8.4 108 474-581 6-119 (120)
115 KOG0567 HEAT repeat-containing 98.4 6.4E-05 1.4E-09 64.8 18.2 92 474-581 186-279 (289)
116 KOG1293 Proteins containing ar 98.4 0.0031 6.7E-08 61.9 33.4 451 10-465 10-533 (678)
117 COG5218 YCG1 Chromosome conden 98.4 0.003 6.5E-08 61.1 29.9 202 10-232 92-298 (885)
118 KOG2025 Chromosome condensatio 98.3 0.00053 1.1E-08 67.5 25.1 105 315-421 81-188 (892)
119 KOG2025 Chromosome condensatio 98.3 0.00026 5.6E-09 69.6 23.1 172 159-345 81-256 (892)
120 KOG0567 HEAT repeat-containing 98.3 0.00039 8.4E-09 60.1 21.3 197 240-468 66-283 (289)
121 cd00020 ARM Armadillo/beta-cat 98.3 4.8E-06 1E-10 66.3 9.6 107 436-542 7-119 (120)
122 PF05918 API5: Apoptosis inhib 98.3 0.00081 1.8E-08 66.3 25.8 278 139-424 36-339 (556)
123 KOG2956 CLIP-associating prote 98.3 0.00012 2.6E-09 68.4 18.7 192 160-355 284-484 (516)
124 KOG2956 CLIP-associating prote 98.3 0.00012 2.5E-09 68.5 18.3 190 201-394 286-484 (516)
125 KOG0168 Putative ubiquitin fus 98.3 0.0011 2.5E-08 66.7 25.7 153 160-312 208-367 (1051)
126 PF13001 Ecm29: Proteasome sta 98.2 0.0021 4.6E-08 64.6 27.6 408 160-579 20-485 (501)
127 PF05004 IFRD: Interferon-rela 98.2 0.00057 1.2E-08 63.6 21.6 180 406-585 52-260 (309)
128 KOG4413 26S proteasome regulat 98.2 0.0043 9.3E-08 55.5 29.2 348 183-543 63-477 (524)
129 KOG4653 Uncharacterized conser 98.2 0.00051 1.1E-08 69.2 21.2 213 326-544 734-965 (982)
130 PF13001 Ecm29: Proteasome sta 98.2 0.00087 1.9E-08 67.3 23.4 402 86-504 24-488 (501)
131 PLN03076 ARF guanine nucleotid 98.1 0.0052 1.1E-07 69.7 30.6 291 180-470 1109-1494(1780)
132 KOG1949 Uncharacterized conser 98.1 0.0015 3.2E-08 64.4 23.0 146 282-427 176-332 (1005)
133 PF05004 IFRD: Interferon-rela 98.1 0.0027 5.9E-08 59.1 23.6 200 367-566 52-286 (309)
134 KOG1967 DNA repair/transcripti 98.1 0.00012 2.5E-09 74.1 14.8 147 120-266 862-1020(1030)
135 COG5218 YCG1 Chromosome conden 98.0 0.016 3.4E-07 56.4 30.4 173 198-384 87-263 (885)
136 PF13513 HEAT_EZ: HEAT-like re 98.0 1.2E-05 2.6E-10 53.2 4.4 51 529-579 2-54 (55)
137 PF13513 HEAT_EZ: HEAT-like re 97.9 4E-05 8.7E-10 50.6 6.2 53 333-385 1-55 (55)
138 KOG1525 Sister chromatid cohes 97.9 0.036 7.8E-07 60.7 31.0 145 435-582 258-405 (1266)
139 PF02985 HEAT: HEAT repeat; I 97.9 1.7E-05 3.6E-10 44.8 3.4 30 554-583 1-30 (31)
140 KOG1525 Sister chromatid cohes 97.9 0.0099 2.1E-07 64.8 26.4 321 94-427 58-406 (1266)
141 PF14500 MMS19_N: Dos2-interac 97.8 0.013 2.9E-07 53.0 22.7 228 325-557 5-251 (262)
142 COG5116 RPN2 26S proteasome re 97.8 0.00045 9.6E-09 66.2 13.7 158 164-333 517-676 (926)
143 KOG1949 Uncharacterized conser 97.8 0.015 3.3E-07 57.7 23.9 144 242-386 175-330 (1005)
144 KOG1967 DNA repair/transcripti 97.8 0.062 1.3E-06 55.4 41.3 149 433-581 864-1023(1030)
145 PF14500 MMS19_N: Dos2-interac 97.8 0.019 4.1E-07 52.0 22.3 227 286-517 5-250 (262)
146 PF08506 Cse1: Cse1; InterPro 97.7 0.006 1.3E-07 58.3 19.8 127 448-577 223-370 (370)
147 PF02985 HEAT: HEAT repeat; I 97.7 5.9E-05 1.3E-09 42.6 3.9 28 243-270 2-29 (31)
148 COG5116 RPN2 26S proteasome re 97.7 0.0017 3.7E-08 62.4 15.4 228 318-567 445-676 (926)
149 KOG1517 Guanine nucleotide bin 97.6 0.0029 6.4E-08 65.3 16.6 226 156-387 469-732 (1387)
150 PF12719 Cnd3: Nuclear condens 97.6 0.035 7.6E-07 52.0 22.9 213 365-581 34-284 (298)
151 PF01347 Vitellogenin_N: Lipop 97.6 0.01 2.2E-07 62.4 21.3 163 397-577 431-617 (618)
152 KOG1851 Uncharacterized conser 97.6 0.19 4.2E-06 55.1 34.7 150 395-545 1524-1680(1710)
153 PF12719 Cnd3: Nuclear condens 97.6 0.029 6.3E-07 52.5 21.5 69 164-234 28-96 (298)
154 COG5098 Chromosome condensatio 97.6 0.11 2.4E-06 51.8 39.6 149 429-583 885-1038(1128)
155 cd00256 VATPase_H VATPase_H, r 97.4 0.14 3E-06 49.7 24.7 193 183-387 54-258 (429)
156 smart00638 LPD_N Lipoprotein N 97.4 0.033 7.3E-07 57.8 21.8 164 396-577 392-573 (574)
157 PLN03076 ARF guanine nucleotid 97.4 0.19 4.2E-06 57.7 28.5 246 161-406 1180-1511(1780)
158 KOG1822 Uncharacterized conser 97.4 0.15 3.4E-06 56.9 26.4 234 311-544 868-1128(2067)
159 KOG1517 Guanine nucleotide bin 97.4 0.004 8.6E-08 64.4 13.9 207 141-347 486-731 (1387)
160 KOG2933 Uncharacterized conser 97.3 0.011 2.4E-07 52.8 14.2 171 398-573 89-268 (334)
161 PF01347 Vitellogenin_N: Lipop 97.3 0.036 7.8E-07 58.3 20.7 211 176-418 377-614 (618)
162 smart00638 LPD_N Lipoprotein N 97.2 0.051 1.1E-06 56.5 20.9 151 370-537 409-572 (574)
163 KOG0414 Chromosome condensatio 97.2 0.43 9.4E-06 51.0 39.6 168 350-526 911-1083(1251)
164 KOG0392 SNF2 family DNA-depend 97.1 0.54 1.2E-05 50.7 34.0 169 414-585 750-928 (1549)
165 PF12530 DUF3730: Protein of u 97.1 0.18 4E-06 45.1 20.6 195 170-372 8-217 (234)
166 KOG2021 Nuclear mRNA export fa 97.1 0.4 8.8E-06 48.6 42.8 324 212-563 203-586 (980)
167 PF08506 Cse1: Cse1; InterPro 97.1 0.32 6.9E-06 46.7 22.9 126 410-538 224-370 (370)
168 KOG0891 DNA-dependent protein 97.0 1.1 2.5E-05 52.9 36.5 514 58-584 492-1043(2341)
169 cd00256 VATPase_H VATPase_H, r 97.0 0.38 8.2E-06 46.7 25.7 194 106-309 54-258 (429)
170 PF13251 DUF4042: Domain of un 97.0 0.013 2.9E-07 49.2 11.1 67 518-584 105-176 (182)
171 KOG2933 Uncharacterized conser 97.0 0.063 1.4E-06 48.2 15.4 165 287-456 95-268 (334)
172 PF11864 DUF3384: Domain of un 96.9 0.52 1.1E-05 47.3 32.1 255 318-579 175-463 (464)
173 KOG2011 Sister chromatid cohes 96.9 0.4 8.6E-06 51.3 23.0 128 445-577 296-430 (1048)
174 PF01603 B56: Protein phosphat 96.8 0.5 1.1E-05 46.4 22.2 254 328-583 99-371 (409)
175 KOG0392 SNF2 family DNA-depend 96.8 0.084 1.8E-06 56.4 17.1 223 242-466 78-326 (1549)
176 PF12530 DUF3730: Protein of u 96.7 0.46 1E-05 42.5 20.0 133 249-387 9-151 (234)
177 PF13251 DUF4042: Domain of un 96.6 0.075 1.6E-06 44.8 12.7 58 370-427 114-175 (182)
178 PF11865 DUF3385: Domain of un 96.6 0.016 3.5E-07 48.1 8.7 140 239-387 8-157 (160)
179 KOG2160 Armadillo/beta-catenin 96.6 0.4 8.7E-06 44.4 17.9 174 409-582 95-282 (342)
180 COG5098 Chromosome condensatio 96.6 1 2.2E-05 45.4 40.8 105 166-270 302-415 (1128)
181 PF10274 ParcG: Parkin co-regu 96.6 0.083 1.8E-06 44.1 12.5 115 434-548 36-169 (183)
182 COG5234 CIN1 Beta-tubulin fold 96.5 0.7 1.5E-05 46.5 20.3 149 160-309 243-416 (993)
183 PF01603 B56: Protein phosphat 96.5 0.94 2E-05 44.5 22.6 251 250-504 99-370 (409)
184 KOG1993 Nuclear transport rece 96.5 1.2 2.7E-05 45.7 36.1 175 411-586 501-689 (978)
185 PF10363 DUF2435: Protein of u 96.5 0.055 1.2E-06 39.7 10.0 80 403-487 9-89 (92)
186 COG5656 SXM1 Importin, protein 96.5 1.2 2.6E-05 45.3 39.5 141 395-535 406-563 (970)
187 KOG2011 Sister chromatid cohes 96.5 0.98 2.1E-05 48.5 22.3 128 407-539 297-431 (1048)
188 PF11865 DUF3385: Domain of un 96.4 0.02 4.3E-07 47.5 8.3 74 470-543 81-157 (160)
189 PF10363 DUF2435: Protein of u 96.4 0.049 1.1E-06 40.0 9.3 79 478-561 6-85 (92)
190 KOG0946 ER-Golgi vesicle-tethe 96.3 1.7 3.7E-05 44.7 33.6 323 163-504 22-399 (970)
191 PF11864 DUF3384: Domain of un 96.3 1.5 3.2E-05 44.1 34.0 128 294-429 191-334 (464)
192 KOG1993 Nuclear transport rece 96.3 1.7 3.7E-05 44.7 33.1 399 140-544 412-865 (978)
193 KOG0889 Histone acetyltransfer 96.1 5.1 0.00011 48.8 33.6 281 239-522 982-1327(3550)
194 KOG2081 Nuclear transport regu 96.1 1.6 3.5E-05 43.0 37.8 387 160-582 60-495 (559)
195 PF12074 DUF3554: Domain of un 96.0 0.95 2.1E-05 43.4 18.8 70 239-309 20-90 (339)
196 PF12054 DUF3535: Domain of un 96.0 1.8 4E-05 42.8 22.3 290 177-474 101-433 (441)
197 KOG2005 26S proteasome regulat 96.0 2 4.4E-05 43.2 28.3 279 283-580 418-702 (878)
198 KOG2160 Armadillo/beta-catenin 95.9 1.4 3E-05 41.0 18.0 175 173-348 93-282 (342)
199 cd08050 TAF6 TATA Binding Prot 95.9 0.22 4.7E-06 47.4 13.6 73 432-504 254-340 (343)
200 PF10274 ParcG: Parkin co-regu 95.9 0.2 4.4E-06 41.9 11.6 112 474-585 37-167 (183)
201 PF03378 CAS_CSE1: CAS/CSE pro 95.7 2.4 5.2E-05 41.9 20.0 192 160-353 68-277 (435)
202 PF12054 DUF3535: Domain of un 95.7 0.88 1.9E-05 45.0 17.0 145 410-561 289-440 (441)
203 PF12074 DUF3554: Domain of un 95.6 1.7 3.7E-05 41.7 18.5 49 513-562 203-253 (339)
204 PF03224 V-ATPase_H_N: V-ATPas 95.5 0.9 2E-05 42.9 16.2 184 195-388 69-270 (312)
205 PF08167 RIX1: rRNA processing 95.4 0.58 1.3E-05 39.2 13.0 123 435-559 24-161 (165)
206 KOG2022 Nuclear transport rece 95.4 4.2 9.1E-05 42.6 39.7 360 217-582 439-867 (982)
207 KOG2973 Uncharacterized conser 95.4 2.1 4.5E-05 38.9 20.7 58 525-582 255-315 (353)
208 PF14664 RICTOR_N: Rapamycin-i 95.4 2.8 6.1E-05 40.4 26.1 303 242-584 26-366 (371)
209 cd08050 TAF6 TATA Binding Prot 95.3 0.3 6.5E-06 46.5 12.0 136 245-387 182-340 (343)
210 PF05536 Neurochondrin: Neuroc 95.2 4.2 9.1E-05 41.6 26.6 175 215-392 70-266 (543)
211 COG5234 CIN1 Beta-tubulin fold 95.1 4.4 9.5E-05 41.2 23.7 67 471-542 687-757 (993)
212 KOG1048 Neural adherens juncti 95.1 2 4.2E-05 44.3 17.4 314 243-567 235-620 (717)
213 KOG1048 Neural adherens juncti 95.1 4.9 0.00011 41.5 22.5 370 204-579 235-681 (717)
214 PF11701 UNC45-central: Myosin 94.9 0.13 2.8E-06 42.7 7.5 131 97-228 16-156 (157)
215 PF08161 NUC173: NUC173 domain 94.9 2.2 4.8E-05 36.8 16.2 164 413-580 16-197 (198)
216 COG5656 SXM1 Importin, protein 94.9 5.3 0.00011 41.1 37.8 364 159-525 404-827 (970)
217 PF07571 DUF1546: Protein of u 94.9 0.11 2.5E-06 38.2 6.3 58 447-504 17-78 (92)
218 PF04118 Dopey_N: Dopey, N-ter 94.9 3.3 7.3E-05 38.5 21.8 177 361-543 57-254 (307)
219 PF10521 DUF2454: Protein of u 94.8 0.79 1.7E-05 42.5 13.2 133 434-566 117-278 (282)
220 KOG2213 Apoptosis inhibitor 5/ 94.8 3.6 7.9E-05 38.6 21.4 69 177-251 38-106 (460)
221 KOG4500 Rho/Rac GTPase guanine 94.8 3.9 8.6E-05 39.0 34.3 185 319-503 315-518 (604)
222 PF08713 DNA_alkylation: DNA a 94.8 2.7 5.9E-05 37.1 17.1 131 203-348 52-184 (213)
223 KOG2213 Apoptosis inhibitor 5/ 94.7 3.8 8.2E-05 38.5 22.6 256 140-429 39-317 (460)
224 PF12231 Rif1_N: Rap1-interact 94.7 4.5 9.8E-05 39.3 28.4 270 176-465 59-352 (372)
225 KOG2549 Transcription initiati 94.6 2 4.3E-05 42.3 15.3 71 434-504 286-370 (576)
226 KOG0889 Histone acetyltransfer 94.6 15 0.00034 45.1 33.1 152 435-586 983-1159(3550)
227 PF08161 NUC173: NUC173 domain 94.5 2.6 5.7E-05 36.4 14.6 70 287-356 7-78 (198)
228 PF12231 Rif1_N: Rap1-interact 94.5 5.1 0.00011 38.9 30.6 263 293-580 59-350 (372)
229 PF08713 DNA_alkylation: DNA a 94.4 0.72 1.6E-05 40.8 11.6 132 125-270 51-184 (213)
230 KOG2022 Nuclear transport rece 94.4 7.8 0.00017 40.7 36.7 360 179-547 440-871 (982)
231 PF04078 Rcd1: Cell differenti 94.4 2.7 5.8E-05 37.5 14.4 148 22-192 8-168 (262)
232 KOG0946 ER-Golgi vesicle-tethe 94.3 7.7 0.00017 40.2 40.3 150 8-157 21-198 (970)
233 KOG2549 Transcription initiati 94.2 0.47 1E-05 46.4 10.2 140 163-309 207-370 (576)
234 KOG1848 Uncharacterized conser 94.1 4.4 9.4E-05 44.7 17.7 217 170-386 849-1131(1610)
235 PF08767 CRM1_C: CRM1 C termin 94.1 5.4 0.00012 37.7 18.6 61 409-469 132-198 (319)
236 COG5095 TAF6 Transcription ini 94.1 4.3 9.3E-05 36.6 15.8 72 433-504 274-359 (450)
237 KOG0803 Predicted E3 ubiquitin 94.1 12 0.00025 42.3 21.5 234 251-485 51-330 (1312)
238 KOG2973 Uncharacterized conser 94.0 4.6 0.0001 36.8 16.2 59 446-504 254-315 (353)
239 PF10521 DUF2454: Protein of u 94.0 2.2 4.7E-05 39.6 14.1 38 198-235 115-152 (282)
240 PF12830 Nipped-B_C: Sister ch 93.9 1.1 2.3E-05 38.6 11.0 71 474-546 7-77 (187)
241 COG5537 IRR1 Cohesin [Cell div 93.8 8.1 0.00017 38.7 18.3 146 436-584 275-424 (740)
242 PF14664 RICTOR_N: Rapamycin-i 93.6 7.2 0.00016 37.7 22.2 211 366-579 34-266 (371)
243 PF08389 Xpo1: Exportin 1-like 93.6 1.8 3.9E-05 35.5 11.8 48 450-499 100-148 (148)
244 PF12830 Nipped-B_C: Sister ch 93.5 0.29 6.3E-06 42.0 7.0 70 512-583 6-75 (187)
245 PF08767 CRM1_C: CRM1 C termin 93.5 6.9 0.00015 37.0 18.3 156 412-567 42-228 (319)
246 KOG4500 Rho/Rac GTPase guanine 93.4 7.6 0.00016 37.2 32.2 109 435-543 314-431 (604)
247 KOG2759 Vacuolar H+-ATPase V1 93.3 7.8 0.00017 37.0 27.5 70 513-582 365-438 (442)
248 PF04118 Dopey_N: Dopey, N-ter 93.3 7.1 0.00015 36.4 18.8 140 244-388 57-202 (307)
249 PF00514 Arm: Armadillo/beta-c 93.2 0.18 3.8E-06 30.5 3.8 30 552-581 11-40 (41)
250 KOG2122 Beta-catenin-binding p 93.1 18 0.00039 40.7 21.6 69 513-581 529-600 (2195)
251 PF07571 DUF1546: Protein of u 93.0 0.43 9.4E-06 35.2 6.3 57 330-386 17-77 (92)
252 KOG2759 Vacuolar H+-ATPase V1 93.0 8.8 0.00019 36.7 29.8 70 474-543 365-438 (442)
253 PF08167 RIX1: rRNA processing 92.7 5.3 0.00012 33.5 14.1 77 158-234 20-100 (165)
254 cd03568 VHS_STAM VHS domain fa 92.7 2.9 6.3E-05 34.0 11.1 75 278-352 35-114 (144)
255 PF11698 V-ATPase_H_C: V-ATPas 92.6 0.43 9.3E-06 36.7 5.9 55 527-581 57-114 (119)
256 PF11701 UNC45-central: Myosin 92.5 0.76 1.6E-05 38.1 7.9 131 447-578 16-155 (157)
257 KOG1851 Uncharacterized conser 92.5 23 0.00049 40.2 33.8 148 436-584 1526-1680(1710)
258 KOG2149 Uncharacterized conser 92.4 3 6.5E-05 39.5 12.2 105 443-547 65-174 (393)
259 PF03224 V-ATPase_H_N: V-ATPas 92.4 10 0.00022 35.9 19.3 169 403-571 111-303 (312)
260 KOG0803 Predicted E3 ubiquitin 92.4 18 0.00038 41.0 19.6 204 363-566 46-289 (1312)
261 KOG2122 Beta-catenin-binding p 92.3 23 0.00051 39.9 22.3 70 436-505 530-602 (2195)
262 cd03569 VHS_Hrs_Vps27p VHS dom 92.3 3.1 6.6E-05 33.8 10.8 98 445-548 17-119 (142)
263 KOG2149 Uncharacterized conser 91.8 5.4 0.00012 37.9 13.0 104 367-470 67-175 (393)
264 COG5110 RPN1 26S proteasome re 91.7 15 0.00033 36.4 17.4 84 318-405 449-534 (881)
265 PF14225 MOR2-PAG1_C: Cell mor 91.5 11 0.00023 34.4 18.8 140 437-586 112-258 (262)
266 PF08569 Mo25: Mo25-like; Int 91.4 13 0.00029 35.2 20.7 184 396-581 75-282 (335)
267 KOG4524 Uncharacterized conser 91.4 23 0.0005 38.0 28.7 93 474-566 802-902 (1014)
268 cd03568 VHS_STAM VHS domain fa 91.3 7 0.00015 31.8 11.9 75 161-235 35-114 (144)
269 PF14868 DUF4487: Domain of un 91.1 20 0.00042 36.7 24.1 83 500-583 466-553 (559)
270 PF05536 Neurochondrin: Neuroc 91.0 21 0.00045 36.8 30.9 224 206-431 9-266 (543)
271 cd03561 VHS VHS domain family; 91.0 3.7 8E-05 32.9 10.0 74 513-586 36-116 (133)
272 PF11698 V-ATPase_H_C: V-ATPas 90.9 1.6 3.5E-05 33.7 7.3 27 243-269 88-114 (119)
273 PF12765 Cohesin_HEAT: HEAT re 90.8 0.44 9.5E-06 29.0 3.4 25 435-459 17-41 (42)
274 cd03567 VHS_GGA VHS domain fam 90.8 7.5 0.00016 31.3 11.4 97 445-547 14-120 (139)
275 PF00514 Arm: Armadillo/beta-c 90.8 0.45 9.8E-06 28.7 3.6 29 514-542 12-40 (41)
276 PF12765 Cohesin_HEAT: HEAT re 90.7 0.25 5.4E-06 30.0 2.3 21 281-301 19-39 (42)
277 COG5537 IRR1 Cohesin [Cell div 90.6 20 0.00044 36.1 19.1 142 281-426 276-422 (740)
278 cd03569 VHS_Hrs_Vps27p VHS dom 90.5 7 0.00015 31.7 11.2 76 278-353 39-119 (142)
279 COG5095 TAF6 Transcription ini 90.2 8.7 0.00019 34.7 12.1 131 445-582 207-359 (450)
280 KOG2229 Protein required for a 90.1 20 0.00044 35.2 28.8 143 429-579 233-378 (616)
281 PF03378 CAS_CSE1: CAS/CSE pro 90.1 21 0.00046 35.4 22.6 176 332-509 85-277 (435)
282 KOG2021 Nuclear mRNA export fa 90.1 26 0.00057 36.4 45.5 304 254-586 206-568 (980)
283 KOG2081 Nuclear transport regu 89.9 23 0.00049 35.4 37.5 296 201-505 152-496 (559)
284 PF00790 VHS: VHS domain; Int 89.8 6.2 0.00013 32.0 10.5 76 473-548 40-123 (140)
285 cd03567 VHS_GGA VHS domain fam 89.4 8.7 0.00019 31.0 10.8 95 407-507 15-119 (139)
286 PF00790 VHS: VHS domain; Int 89.0 11 0.00024 30.6 12.8 76 160-235 39-122 (140)
287 cd07064 AlkD_like_1 A new stru 88.9 15 0.00033 32.2 15.3 133 86-232 46-180 (208)
288 KOG1848 Uncharacterized conser 88.9 45 0.00097 37.5 22.7 218 209-426 849-1132(1610)
289 cd06561 AlkD_like A new struct 88.9 15 0.00032 31.9 14.4 61 206-269 109-169 (197)
290 PF08623 TIP120: TATA-binding 88.9 1.2 2.5E-05 37.0 5.6 59 252-311 38-96 (169)
291 PF14868 DUF4487: Domain of un 88.6 31 0.00067 35.3 24.6 87 419-506 463-554 (559)
292 KOG2005 26S proteasome regulat 88.6 31 0.00068 35.3 18.8 282 279-579 451-740 (878)
293 cd03561 VHS VHS domain family; 88.4 11 0.00023 30.3 10.8 97 445-547 13-116 (133)
294 PF08623 TIP120: TATA-binding 88.3 3.7 8E-05 34.2 8.1 77 173-250 37-115 (169)
295 KOG0891 DNA-dependent protein 88.2 71 0.0015 39.0 37.3 216 363-582 486-719 (2341)
296 PF08064 UME: UME (NUC010) dom 88.1 9.7 0.00021 29.1 9.9 61 370-432 27-89 (107)
297 KOG4646 Uncharacterized conser 87.9 8.3 0.00018 30.4 9.1 134 446-581 27-169 (173)
298 PF08389 Xpo1: Exportin 1-like 87.6 14 0.0003 30.1 14.3 139 255-419 2-146 (148)
299 KOG1222 Kinesin associated pro 86.9 33 0.00071 33.6 24.3 333 202-544 304-664 (791)
300 KOG3678 SARM protein (with ste 86.5 33 0.00072 33.4 17.7 145 88-232 182-337 (832)
301 smart00288 VHS Domain present 86.4 15 0.00033 29.4 10.7 74 474-547 36-115 (133)
302 PF12397 U3snoRNP10: U3 small 86.1 15 0.00032 28.9 11.9 70 396-467 5-76 (121)
303 PF12397 U3snoRNP10: U3 small 86.0 15 0.00032 28.8 11.7 71 433-506 3-76 (121)
304 PF08064 UME: UME (NUC010) dom 86.0 13 0.00029 28.3 10.6 63 174-238 26-90 (107)
305 cd03572 ENTH_epsin_related ENT 85.8 15 0.00032 28.7 10.3 69 512-581 36-118 (122)
306 PF11935 DUF3453: Domain of un 85.5 27 0.00059 31.4 13.2 50 513-564 113-164 (239)
307 smart00288 VHS Domain present 85.5 17 0.00037 29.1 11.7 75 160-234 34-114 (133)
308 KOG2229 Protein required for a 85.4 41 0.00088 33.3 24.3 334 199-544 17-382 (616)
309 cd00197 VHS_ENTH_ANTH VHS, ENT 85.2 15 0.00033 28.4 10.0 37 396-432 36-72 (115)
310 KOG1932 TATA binding protein a 84.8 19 0.00041 39.2 12.8 49 489-540 882-930 (1180)
311 KOG2038 CAATT-binding transcri 82.9 66 0.0014 33.8 26.3 70 239-310 302-371 (988)
312 cd00197 VHS_ENTH_ANTH VHS, ENT 82.4 19 0.00041 27.9 9.4 36 474-509 36-71 (115)
313 PF07539 DRIM: Down-regulated 82.2 6.6 0.00014 31.7 6.8 48 279-331 16-63 (141)
314 cd03572 ENTH_epsin_related ENT 81.5 23 0.00051 27.7 10.6 38 158-195 33-70 (122)
315 PF12612 TFCD_C: Tubulin foldi 81.5 18 0.00039 31.3 9.8 28 437-464 8-35 (193)
316 PF09324 DUF1981: Domain of un 81.2 18 0.0004 26.2 8.3 68 160-227 14-84 (86)
317 smart00567 EZ_HEAT E-Z type HE 81.2 3.2 6.9E-05 22.8 3.4 12 491-502 3-14 (30)
318 KOG1789 Endocytosis protein RM 81.0 94 0.002 34.2 19.6 150 220-370 1743-1910(2235)
319 KOG1222 Kinesin associated pro 80.8 61 0.0013 31.9 27.7 345 218-583 279-664 (791)
320 KOG2038 CAATT-binding transcri 80.4 81 0.0018 33.2 25.9 123 318-444 303-427 (988)
321 KOG3678 SARM protein (with ste 80.2 62 0.0013 31.7 17.2 144 361-504 183-336 (832)
322 COG5369 Uncharacterized conser 80.2 6.1 0.00013 38.9 6.8 108 435-542 430-544 (743)
323 smart00185 ARM Armadillo/beta- 80.1 2.1 4.5E-05 25.5 2.7 29 553-581 12-40 (41)
324 cd07064 AlkD_like_1 A new stru 78.3 46 0.001 29.2 18.3 63 282-348 117-179 (208)
325 PF08569 Mo25: Mo25-like; Int 77.3 69 0.0015 30.6 24.2 181 202-388 76-284 (335)
326 PF14668 RICTOR_V: Rapamycin-i 76.7 12 0.00025 26.2 5.6 54 492-545 4-60 (73)
327 smart00185 ARM Armadillo/beta- 75.9 5.7 0.00012 23.5 3.7 27 242-268 13-39 (41)
328 cd03565 VHS_Tom1 VHS domain fa 75.2 43 0.00092 27.2 11.1 96 252-353 16-120 (141)
329 COG5101 CRM1 Importin beta-rel 75.0 1.1E+02 0.0023 31.6 36.7 76 472-547 567-652 (1053)
330 smart00802 UME Domain in UVSB 74.6 36 0.00078 26.0 9.2 56 373-430 30-87 (107)
331 PF03130 HEAT_PBS: PBS lyase H 74.5 1.5 3.2E-05 23.6 0.7 12 296-307 1-12 (27)
332 PF09324 DUF1981: Domain of un 74.2 17 0.00038 26.4 6.4 68 199-266 14-84 (86)
333 KOG2199 Signal transducing ada 73.9 27 0.00058 33.1 8.8 37 435-471 44-80 (462)
334 PF11935 DUF3453: Domain of un 73.9 68 0.0015 28.9 16.0 63 171-233 1-74 (239)
335 smart00802 UME Domain in UVSB 73.8 37 0.00081 25.9 9.9 60 176-237 28-89 (107)
336 KOG2199 Signal transducing ada 73.3 37 0.0008 32.3 9.5 74 161-234 43-121 (462)
337 COG5369 Uncharacterized conser 72.9 16 0.00034 36.3 7.4 126 455-580 408-543 (743)
338 KOG1837 Uncharacterized conser 72.0 2E+02 0.0043 33.4 35.3 92 494-587 1523-1616(1621)
339 KOG4524 Uncharacterized conser 71.3 1.6E+02 0.0035 32.1 37.3 76 511-586 800-880 (1014)
340 PF06685 DUF1186: Protein of u 70.6 82 0.0018 28.4 16.6 79 322-408 114-196 (249)
341 cd06561 AlkD_like A new struct 70.2 71 0.0015 27.6 17.8 64 283-349 108-171 (197)
342 KOG1087 Cytosolic sorting prot 70.1 68 0.0015 32.1 11.2 99 443-547 12-116 (470)
343 KOG1988 Uncharacterized conser 68.1 1.8E+02 0.0038 31.3 18.3 114 201-314 23-136 (970)
344 PF07539 DRIM: Down-regulated 67.9 35 0.00077 27.6 7.4 33 160-192 14-46 (141)
345 KOG0929 Guanine nucleotide exc 67.4 2.5E+02 0.0054 32.7 17.7 223 242-470 1038-1303(1514)
346 COG5101 CRM1 Importin beta-rel 67.0 1.6E+02 0.0035 30.4 32.1 91 198-288 566-666 (1053)
347 PF06371 Drf_GBD: Diaphanous G 65.9 46 0.00099 28.5 8.6 55 448-502 128-185 (187)
348 KOG1926 Predicted regulator of 65.8 2.2E+02 0.0048 31.6 17.7 214 282-503 76-305 (1129)
349 COG5110 RPN1 26S proteasome re 64.4 1.7E+02 0.0036 29.7 23.1 251 279-544 449-706 (881)
350 KOG1087 Cytosolic sorting prot 64.1 59 0.0013 32.5 9.5 97 406-508 14-116 (470)
351 PF12612 TFCD_C: Tubulin foldi 63.0 76 0.0016 27.4 9.2 30 240-269 6-35 (193)
352 PF11841 DUF3361: Domain of un 62.2 90 0.002 25.8 10.8 98 451-548 32-136 (160)
353 PF14222 MOR2-PAG1_N: Cell mor 62.0 2E+02 0.0044 29.8 32.0 49 498-546 455-503 (552)
354 KOG4199 Uncharacterized conser 60.8 1.5E+02 0.0033 27.9 25.1 142 362-503 287-443 (461)
355 KOG3961 Uncharacterized conser 60.3 29 0.00063 29.9 5.7 88 435-522 113-207 (262)
356 COG4912 Predicted DNA alkylati 59.3 65 0.0014 28.1 7.7 30 280-309 154-183 (222)
357 COG2733 Predicted membrane pro 58.8 1.8E+02 0.0038 28.1 23.0 25 326-350 308-332 (415)
358 KOG1932 TATA binding protein a 58.5 1.7E+02 0.0037 32.5 12.1 126 212-347 653-802 (1180)
359 PF08620 RPAP1_C: RPAP1-like, 58.3 28 0.0006 24.3 4.4 38 3-40 33-70 (73)
360 PF06371 Drf_GBD: Diaphanous G 58.1 93 0.002 26.5 9.1 55 215-269 129-186 (187)
361 cd03565 VHS_Tom1 VHS domain fa 58.0 1E+02 0.0022 25.0 12.4 74 162-235 37-119 (141)
362 PF14228 MOR2-PAG1_mid: Cell m 57.8 3.4E+02 0.0073 31.0 26.2 69 242-310 504-573 (1120)
363 KOG4199 Uncharacterized conser 56.9 1.8E+02 0.0038 27.5 28.8 142 439-580 286-442 (461)
364 PF14225 MOR2-PAG1_C: Cell mor 55.5 1.7E+02 0.0036 26.8 19.3 167 239-413 62-244 (262)
365 KOG3961 Uncharacterized conser 55.4 52 0.0011 28.5 6.4 86 202-289 114-201 (262)
366 PF14668 RICTOR_V: Rapamycin-i 54.1 54 0.0012 22.9 5.4 53 531-583 4-59 (73)
367 PF04821 TIMELESS: Timeless pr 53.2 1.9E+02 0.004 26.7 10.6 63 4-74 8-70 (266)
368 PF11841 DUF3361: Domain of un 52.5 1.3E+02 0.0029 24.9 9.9 110 470-581 6-130 (160)
369 PF14222 MOR2-PAG1_N: Cell mor 51.4 3E+02 0.0065 28.6 26.3 286 98-389 143-502 (552)
370 KOG1789 Endocytosis protein RM 51.3 4E+02 0.0086 29.9 24.0 131 353-485 1998-2140(2235)
371 PF11707 Npa1: Ribosome 60S bi 50.4 2.3E+02 0.0051 27.0 16.0 146 438-583 58-238 (330)
372 KOG4646 Uncharacterized conser 49.2 1.4E+02 0.003 24.0 10.2 94 331-424 29-126 (173)
373 PF14228 MOR2-PAG1_mid: Cell m 48.2 4.7E+02 0.01 29.9 31.9 288 160-466 193-573 (1120)
374 KOG3036 Protein involved in ce 48.1 2.1E+02 0.0045 25.7 11.7 68 124-191 123-196 (293)
375 PF04510 DUF577: Family of unk 48.0 1.7E+02 0.0036 24.6 10.2 145 437-585 4-164 (174)
376 KOG2842 Interferon-related pro 47.7 2.7E+02 0.0058 26.9 14.1 54 161-214 242-301 (427)
377 PF04078 Rcd1: Cell differenti 46.8 2.3E+02 0.0049 25.8 17.0 109 437-545 96-220 (262)
378 KOG3036 Protein involved in ce 46.8 2.2E+02 0.0047 25.6 12.4 52 411-462 139-194 (293)
379 COG5231 VMA13 Vacuolar H+-ATPa 46.2 2.6E+02 0.0056 26.3 17.7 70 514-583 356-429 (432)
380 KOG1988 Uncharacterized conser 45.6 4.3E+02 0.0093 28.7 18.1 106 324-429 29-134 (970)
381 PF14676 FANCI_S2: FANCI solen 43.6 1.9E+02 0.0041 24.0 9.7 81 495-577 75-156 (158)
382 KOG1877 Putative transmembrane 42.9 4.7E+02 0.01 28.4 14.5 276 298-574 74-398 (819)
383 PF14663 RasGEF_N_2: Rapamycin 41.4 69 0.0015 24.8 4.9 33 472-504 5-37 (115)
384 PF10304 DUF2411: Domain of un 41.1 64 0.0014 18.8 3.5 20 562-581 15-34 (36)
385 PF04388 Hamartin: Hamartin pr 40.0 4E+02 0.0087 28.5 11.7 150 398-562 5-161 (668)
386 COG5330 Uncharacterized protei 39.8 1.3E+02 0.0027 28.8 7.1 66 476-541 8-74 (364)
387 KOG1823 DRIM (Down-regulated i 39.6 6.7E+02 0.014 29.2 30.5 349 161-525 805-1180(1364)
388 KOG0905 Phosphoinositide 3-kin 39.4 1.9E+02 0.0042 32.4 9.1 92 173-274 900-991 (1639)
389 PF12333 Ipi1_N: Rix1 complex 39.3 1.4E+02 0.003 22.5 6.2 53 160-212 8-63 (102)
390 PF12783 Sec7_N: Guanine nucle 39.0 2.3E+02 0.005 23.7 10.3 70 435-504 72-146 (168)
391 PF12333 Ipi1_N: Rix1 complex 36.6 96 0.0021 23.4 4.9 38 511-548 8-45 (102)
392 cd07920 Pumilio Pumilio-family 36.2 3.8E+02 0.0082 25.3 24.9 21 244-264 23-43 (322)
393 KOG4151 Myosin assembly protei 35.2 5.9E+02 0.013 27.3 11.6 144 239-386 502-655 (748)
394 KOG2153 Protein involved in th 34.5 5.6E+02 0.012 26.8 29.7 370 157-536 204-652 (704)
395 PF05596 Taeniidae_ag: Taeniid 34.1 1.1E+02 0.0024 20.8 4.2 60 525-585 3-62 (64)
396 PF11919 DUF3437: Domain of un 33.1 2E+02 0.0043 21.2 5.9 55 490-545 4-60 (90)
397 KOG3687 Tuberin - Rap/ran-GTPa 32.6 7.4E+02 0.016 27.6 21.3 63 408-471 441-508 (1697)
398 KOG2374 Uncharacterized conser 32.3 5.3E+02 0.011 25.8 10.1 106 361-470 10-130 (661)
399 cd03562 CID CID (CTD-Interacti 32.0 2.4E+02 0.0051 21.7 7.4 86 454-541 18-106 (114)
400 COG5231 VMA13 Vacuolar H+-ATPa 30.6 4.7E+02 0.01 24.7 16.9 29 163-191 149-177 (432)
401 KOG2085 Serine/threonine prote 29.4 5.5E+02 0.012 25.2 13.2 181 279-461 176-366 (457)
402 COG5330 Uncharacterized protei 28.7 3E+02 0.0066 26.4 7.7 65 282-346 9-74 (364)
403 PF09450 DUF2019: Domain of un 28.5 53 0.0012 24.9 2.3 24 518-541 51-74 (106)
404 PF14663 RasGEF_N_2: Rapamycin 28.4 1.4E+02 0.0031 23.1 4.8 33 433-465 5-37 (115)
405 PF04869 Uso1_p115_head: Uso1 27.8 5.3E+02 0.011 24.4 11.2 58 408-465 167-231 (312)
406 KOG1086 Cytosolic sorting prot 27.3 4.8E+02 0.01 25.6 8.6 62 409-470 17-79 (594)
407 COG4912 Predicted DNA alkylati 26.6 4.5E+02 0.0098 23.2 10.7 68 278-348 116-183 (222)
408 PF11791 Aconitase_B_N: Aconit 26.1 3.4E+02 0.0074 22.3 6.4 65 474-546 62-126 (154)
409 KOG1566 Conserved protein Mo25 25.6 5.7E+02 0.012 24.1 20.8 218 355-576 76-327 (342)
410 PF04388 Hamartin: Hamartin pr 25.3 8.7E+02 0.019 26.1 13.6 145 93-250 11-161 (668)
411 PF08324 PUL: PUL domain; Int 24.6 3.9E+02 0.0085 24.4 7.9 98 211-308 119-230 (268)
412 KOG2753 Uncharacterized conser 24.6 6.1E+02 0.013 24.1 14.4 174 79-270 40-216 (378)
413 COG5209 RCD1 Uncharacterized p 24.5 5E+02 0.011 23.0 8.7 66 125-190 145-216 (315)
414 KOG2085 Serine/threonine prote 24.5 6.8E+02 0.015 24.6 13.0 32 357-388 176-207 (457)
415 PF01465 GRIP: GRIP domain; I 24.5 1.6E+02 0.0034 18.3 3.5 33 161-193 5-37 (46)
416 COG2733 Predicted membrane pro 24.4 6.7E+02 0.014 24.4 24.5 23 484-506 310-332 (415)
417 COG1698 Uncharacterized protei 24.1 2.9E+02 0.0063 20.1 8.2 69 512-580 15-88 (93)
418 PF11262 Tho2: Transcription f 23.7 2.9E+02 0.0062 26.0 6.8 68 513-580 226-297 (298)
419 PF09268 Clathrin-link: Clathr 22.8 75 0.0016 16.6 1.5 19 475-493 3-21 (24)
420 PF11919 DUF3437: Domain of un 22.5 1.8E+02 0.004 21.4 4.1 51 179-230 5-57 (90)
421 PF12726 SEN1_N: SEN1 N termin 22.4 1E+03 0.022 25.9 34.8 111 85-196 119-247 (727)
422 PF08620 RPAP1_C: RPAP1-like, 21.9 1.2E+02 0.0027 21.2 2.9 34 512-545 37-70 (73)
423 PF12783 Sec7_N: Guanine nucle 21.3 4.9E+02 0.011 21.7 12.2 82 201-288 72-158 (168)
424 PF08324 PUL: PUL domain; Int 20.6 6.6E+02 0.014 23.0 13.5 96 486-581 121-230 (268)
No 1
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-51 Score=402.81 Aligned_cols=580 Identities=54% Similarity=0.833 Sum_probs=545.5
Q ss_pred CCcccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCCcchHh
Q 007863 6 EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYAN 85 (587)
Q Consensus 6 ~~~~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~ 85 (587)
++.+|+..+++.+..+|-+.|..+.+.++.++...|.++++..|+|++.+..++.++|+..++..+|.+.++.|+..+.+
T Consensus 79 ~~~~~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~~ 158 (759)
T KOG0211|consen 79 DSLYPIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYAH 158 (759)
T ss_pred cccccHHHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhccchhHHHHHHHHHhcccchhccchhHHH
Confidence 47999999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred hhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCC-HHHHHHH
Q 007863 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAP-EALKTEL 164 (587)
Q Consensus 86 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~-~~~~~~l 164 (587)
.+++.+..++.+.+..+|+++++.+..++..++.+....++.|.+.++..++++..|..++++++..+...+ +.++..+
T Consensus 159 ~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~el 238 (759)
T KOG0211|consen 159 MLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKREL 238 (759)
T ss_pred HhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHH
Confidence 999999999999999999999999999999999888889999999999999999999999999999999988 5589999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChh-hhhhchH
Q 007863 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ-DCVAHIL 243 (587)
Q Consensus 165 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~ 243 (587)
.+.+.++++|.++.||.++++-++.+++.++.+.....++|.+.++..|+.+.||..|+..+..+.+.+... ...+.+.
T Consensus 239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~ 318 (759)
T KOG0211|consen 239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLT 318 (759)
T ss_pred HHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhh
Confidence 999999999999999999999999999999998889999999999999999999999999999999998876 6778899
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC----HHHHHHh
Q 007863 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN----PELAIQH 319 (587)
Q Consensus 244 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~ 319 (587)
+.+.+..+|.+|++|......+..+...+|++.......+.+..+++|..+++|.+++.....+..... .+...+.
T Consensus 319 ~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ 398 (759)
T KOG0211|consen 319 ESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSS 398 (759)
T ss_pred HHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhh
Confidence 999999999999999999999999999999988888899999999999999999999999999998877 3344567
Q ss_pred HHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHH---HHhHHhhhhhchhhHhh
Q 007863 320 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNII---SKLDQVNQVIGIDLLSQ 396 (587)
Q Consensus 320 ~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~---~~l~~i~~~~~~~~~~~ 396 (587)
++|.+..+..|.+..||.+.+..+..+...+|.+...+.+.|.+...++|..+.||.... ..+....+..|.....+
T Consensus 399 ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~ 478 (759)
T KOG0211|consen 399 ILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSN 478 (759)
T ss_pred hhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhh
Confidence 889999999999999999999999999888898888889999999999999999999999 44555556677778888
Q ss_pred hhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhch
Q 007863 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI 476 (587)
Q Consensus 397 ~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 476 (587)
..+|.+..+..|.+|++|.++++.+..++...|.+++.+.+.+++..++.|...++|++|...+..++..+|.+|....+
T Consensus 479 slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~ 558 (759)
T KOG0211|consen 479 SLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEE 558 (759)
T ss_pred hhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888999
Q ss_pred HHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHH
Q 007863 477 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRP 556 (587)
Q Consensus 477 ~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~ 556 (587)
+|.++.+..+++|.+|.+.+.++..++..+|.+.+.+.++|.+..+..|++++||.++++.+..+.+.+..+...+.+.|
T Consensus 559 i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~p 638 (759)
T KOG0211|consen 559 IPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLP 638 (759)
T ss_pred hHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHH
Confidence 99999998888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHhh
Q 007863 557 CLVELSEDPDVDVRFFATQALQSKDQVMM 585 (587)
Q Consensus 557 ~l~~l~~d~~~~Vr~~a~~al~~l~~~~~ 585 (587)
.+..+..|++.|||..|..|++.+.....
T Consensus 639 ll~~L~~d~~~dvr~~a~~a~~~i~l~~~ 667 (759)
T KOG0211|consen 639 LLETLSSDQELDVRYRAILAFGSIELSRL 667 (759)
T ss_pred HHHHhccCcccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876543
No 2
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-31 Score=262.12 Aligned_cols=545 Identities=17% Similarity=0.229 Sum_probs=426.6
Q ss_pred cccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccccc--CCchHHHHHHHHHhcc----cccCcCCc
Q 007863 8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN--DDDDEVLLAMAEELGV----FIPYVGGL 81 (587)
Q Consensus 8 ~~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~--~~~~~v~~~~~~~l~~----~~~~~~~~ 81 (587)
..++..|+..+.|+|+++|..|-+.+.++.. ++. ++|.|.... ..++++|..++-.+.+ ..+.+..+
T Consensus 3 ~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~---~~~----~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e 75 (1075)
T KOG2171|consen 3 SAPLEQLLQQLLSPDNEVRRQAEEALETLAK---TEP----LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAE 75 (1075)
T ss_pred hhHHHHHHHHhcCCCchHHHHHHHHHHHhhc---ccc----hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 3478899999999999999999999987642 222 777776643 4577888766644443 44445544
Q ss_pred chHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH--
Q 007863 82 EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA-- 159 (587)
Q Consensus 82 ~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~-- 159 (587)
...+..-.+|..+...+.+.||++.++.+..+++..-++ -++.+++++.+..+++++..|..|..++..+....+..
T Consensus 76 ~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~ 154 (1075)
T KOG2171|consen 76 VQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ 154 (1075)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc
Confidence 444555556777778899999999999999999998777 67889999999999999999999999998887666543
Q ss_pred -HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh-h-------hhHHHHHHHHHHhcccCchhHHHHHHHHHHHHh
Q 007863 160 -LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-A-------HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALG 230 (587)
Q Consensus 160 -~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-~-------~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~ 230 (587)
+...+.+++.+.+.|++..||..++++++.++...+. . ...+.++..+.....+++...-..+.+++..+.
T Consensus 155 ~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~ 234 (1075)
T KOG2171|consen 155 PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELL 234 (1075)
T ss_pred hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHH
Confidence 6789999999999999888999999999999998852 1 223344555566667777777788888888888
Q ss_pred cccCh--hhhhhchHHHHHHhcCCC--chHHHHHHHHHHHHHHHHhCC-----CCcccchHHHHHHhcC----CCh----
Q 007863 231 KLLEP--QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP-----EPTRSDVVPAYVRLLR----DNE---- 293 (587)
Q Consensus 231 ~~~~~--~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~----d~~---- 293 (587)
...++ ......++.+......++ +..+|..|++.+..+++.-+. ......+++.+..... |++
T Consensus 235 e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~ 314 (1075)
T KOG2171|consen 235 ESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNE 314 (1075)
T ss_pred hhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccc
Confidence 77665 334556666667766654 789999999999988876321 1133456666666543 211
Q ss_pred --------HHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH--HHHHhHHHHH
Q 007863 294 --------AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIF 363 (587)
Q Consensus 294 --------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l 363 (587)
...-..|.+++..++.++|++...+.+++.+..++.+++|.-|.++..+++.+++..++. ...+.++|++
T Consensus 315 d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~V 394 (1075)
T KOG2171|consen 315 DDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIV 394 (1075)
T ss_pred cccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 124678899999999999999888999999999999999999999999999999887643 3567899999
Q ss_pred HHhcCCCChHHHHHHHHHhHHhhhhhchh---hHhhhhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChhhHHHH---
Q 007863 364 LSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDK--- 436 (587)
Q Consensus 364 ~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~~--- 436 (587)
...++|++|.||.+|+.+++.+...+.++ .+.+.+.|.+...+.+ .+.+|...+..++-.+......+.+.++
T Consensus 395 l~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~ 474 (1075)
T KOG2171|consen 395 LNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDG 474 (1075)
T ss_pred HhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 99999999999999999999999888765 3445677788777776 4779999999999888887776655544
Q ss_pred HHH-HHHHHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCC----ccHHHHHHHHHHHHhhcccChH
Q 007863 437 LGA-LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNP----HYLYRMTILQAISLLAPVMGSE 509 (587)
Q Consensus 437 l~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~----~~~~r~~a~~~l~~l~~~~~~~ 509 (587)
++. .+..+.+++.+.||+.++.+++..+...+..| +.+.++|.+.+.+... ...+|...+.+++.++..+|++
T Consensus 475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke 554 (1075)
T KOG2171|consen 475 LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKE 554 (1075)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhh
Confidence 444 44556788899999999999999999888776 4588999998887544 3568888899999999999988
Q ss_pred HH---HHhHHHHHHhh---cCCCCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHH
Q 007863 510 IT---CSQLLPVVINA---SKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVE 560 (587)
Q Consensus 510 ~~---~~~~l~~l~~~---l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~ 560 (587)
.| .+.++..+... ..+.+...|...+.+.+.+++.++++ +|...++|.+.+
T Consensus 555 ~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ 613 (1075)
T KOG2171|consen 555 KFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLK 613 (1075)
T ss_pred hhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHH
Confidence 66 45566666666 44567788889999999999999875 777888887776
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-29 Score=253.16 Aligned_cols=573 Identities=17% Similarity=0.198 Sum_probs=420.6
Q ss_pred HHHHHhcC-ccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccccc-CCchHHHHHHHHHhcccccCcCCcc--hHhhhh
Q 007863 13 VLIDELKN-DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGLE--YANVLL 88 (587)
Q Consensus 13 ~l~~~l~s-~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~~~~v~~~~~~~l~~~~~~~~~~~--~~~~l~ 88 (587)
.++..+.+ +.+.+|+.-.+.+.++++...++ .|++|+|+|.++. +.++..|..+...+..+...+|+.. |...+.
T Consensus 83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~ 161 (1075)
T KOG2171|consen 83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL 161 (1075)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH
Confidence 34444444 57899999999999999999988 9999999999854 6678888888888888777776543 567888
Q ss_pred hHHHhhhcCchhHHHHHHHHHHHHHHhhcC--hhhH--hhhhHHHHHHhh----cCCCCcchhhHHhhhhhhccCCCH--
Q 007863 89 PPLETLCTVEETCVRDKAVESLCRIGSQMR--EQDV--VEHFIPLVKRLA----AGEWFTARVSSCGLFHVAYPSAPE-- 158 (587)
Q Consensus 89 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~--~~~~--~~~ll~~~~~l~----~~~~~~~r~~a~~l~~~~~~~~~~-- 158 (587)
+++.+-+.|++..||-.|+++++.++..+. ...+ ...++|-+.+.+ .+++...-..+...+..+....++
T Consensus 162 ~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l 241 (1075)
T KOG2171|consen 162 RLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL 241 (1075)
T ss_pred HHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH
Confidence 999998888887799999999999999885 2222 234566444433 333333334455555555555544
Q ss_pred -HHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHhcccC---------------c
Q 007863 159 -ALKTELRTIYRQLCQDD--MPMVRRSAATNLGKFAATVEA-----AHLKSEIMSIFEELTQDD---------------Q 215 (587)
Q Consensus 159 -~~~~~l~~~l~~l~~~~--~~~vR~~a~~~l~~l~~~~~~-----~~~~~~i~~~l~~l~~d~---------------~ 215 (587)
.+...++.+......+. +..+|..|.+.|..+++..+. ..+.+.+++.+..+..+. +
T Consensus 242 ~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~ 321 (1075)
T KOG2171|consen 242 RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD 321 (1075)
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccccc
Confidence 35666777777776665 688999999999999998553 335666777666654421 1
Q ss_pred -hhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC--CcccchHHHHHHhcCCC
Q 007863 216 -DSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRSDVVPAYVRLLRDN 292 (587)
Q Consensus 216 -~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~ 292 (587)
..-...|.+++..++-.++.+...+.+++.+..++.+++|+-|.++..+|+.++...++. ...+.+++.....++|+
T Consensus 322 ~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dp 401 (1075)
T KOG2171|consen 322 EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDP 401 (1075)
T ss_pred ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC
Confidence 225667899999999999988889999999999999999999999999999998765542 13457899999999999
Q ss_pred hHHHHHHHHHhHHHHHHhhCHH---HHHHhHHHHHhHhcCCC-cHHHHHHHHHHHHhhhhhhchHHHHH---hHHH-HHH
Q 007863 293 EAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDS-SQHVRSALATVIMGMAPILGKDATIE---QLLP-IFL 364 (587)
Q Consensus 293 ~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~---~l~~-~l~ 364 (587)
++.||.+|+.+++.++..+.++ .+.+.+.|.+...+.|. +.+|...|+.++..+.....++...+ .++. .+.
T Consensus 402 hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~ 481 (1075)
T KOG2171|consen 402 HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLL 481 (1075)
T ss_pred CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999886 33345666777766665 67999999999998888777655443 3444 444
Q ss_pred HhcCCCChHHHHHHHHHhHHhhhhhchh--hHhhhhHHHHHHHhcCC----CcHHHHHHHHHHHHHHHhhChhhHHHH--
Q 007863 365 SLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDR----HWRVRLAIIEYIPLLASQLGVGFFDDK-- 436 (587)
Q Consensus 365 ~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~~~----~~~vr~~~~~~l~~l~~~~~~~~~~~~-- 436 (587)
.++..+.+.||..++.+++.++...+.. .+.+.++|.+...+... ....|...+++++.++..+|.+.|.+.
T Consensus 482 ~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~ 561 (1075)
T KOG2171|consen 482 LLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAE 561 (1075)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHH
Confidence 5566778999999999999999887754 34577889888887543 356788888999999988887766543
Q ss_pred -HHHHHHHH---cCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhh--------------------------
Q 007863 437 -LGALCMQW---LKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMI-------------------------- 484 (587)
Q Consensus 437 -l~~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l-------------------------- 484 (587)
++.++... ..+.+...|...+..++.+++.+|.+| |.+.++|.++.-.
T Consensus 562 eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~ 641 (1075)
T KOG2171|consen 562 ELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVV 641 (1075)
T ss_pred HHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhh
Confidence 33333333 334455566666666666666665554 2333444333311
Q ss_pred ----------------------------------------------------cCCccHHHHHHHHHHHHhhccc------
Q 007863 485 ----------------------------------------------------NNPHYLYRMTILQAISLLAPVM------ 506 (587)
Q Consensus 485 ----------------------------------------------------~~~~~~~r~~a~~~l~~l~~~~------ 506 (587)
......||.+|+.++..+....
T Consensus 642 ~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~ 721 (1075)
T KOG2171|consen 642 ELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQG 721 (1075)
T ss_pred ccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1123345555555554444210
Q ss_pred ChH-----------------------------------------------------------------------------
Q 007863 507 GSE----------------------------------------------------------------------------- 509 (587)
Q Consensus 507 ~~~----------------------------------------------------------------------------- 509 (587)
++.
T Consensus 722 ~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~e 801 (1075)
T KOG2171|consen 722 GPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDE 801 (1075)
T ss_pred ChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 000
Q ss_pred --------------------------------------HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--H
Q 007863 510 --------------------------------------ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--V 549 (587)
Q Consensus 510 --------------------------------------~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~ 549 (587)
++...+.|.++.++.+..+.-|..++-.++.+++..++. .
T Consensus 802 ed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~ 881 (1075)
T KOG2171|consen 802 EDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAK 881 (1075)
T ss_pred hhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccch
Confidence 356778888888888887777999999999998887764 7
Q ss_pred HHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863 550 VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 586 (587)
Q Consensus 550 ~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~~ 586 (587)
+...++|.+.+++.|++|+||.+|..+++.+++.-|+
T Consensus 882 ~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~ 918 (1075)
T KOG2171|consen 882 YKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGE 918 (1075)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 7789999999999999999999999999999998764
No 4
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=9.1e-32 Score=266.97 Aligned_cols=519 Identities=19% Similarity=0.264 Sum_probs=450.3
Q ss_pred HHHHHhcccccCcCCcchHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhH
Q 007863 66 AMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSS 145 (587)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a 145 (587)
....-+.+++-..|.+-....++|.+.... +.+..|...+...++.+....+...+...++|-+..++......+|..+
T Consensus 101 ~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ 179 (759)
T KOG0211|consen 101 NSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKA 179 (759)
T ss_pred hhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHH
Confidence 333344444333444434567888888877 8889999999999999999988888888888999888888877788888
Q ss_pred HhhhhhhccCCCH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHH
Q 007863 146 CGLFHVAYPSAPE-ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVE 224 (587)
Q Consensus 146 ~~l~~~~~~~~~~-~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~ 224 (587)
+.-+..+....++ .....+.+++..+..++...-|..++..++..+...++...+..+.|.+.++++|..+.||..+..
T Consensus 180 ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~ 259 (759)
T KOG0211|consen 180 VESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVAS 259 (759)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 7765555444444 467889999999988866667888888888888877767889999999999999999999999999
Q ss_pred HHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC-CcccchHHHHHHhcCCChHHHHHHHHHh
Q 007863 225 GCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRSDVVPAYVRLLRDNEAEVRIAAAGK 303 (587)
Q Consensus 225 ~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 303 (587)
-++.+++.++.+.....+.|.+..+..|....||..|...+..+...+... ...+.+.+.+.+..+|.+|.+|......
T Consensus 260 ~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~ 339 (759)
T KOG0211|consen 260 NLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADK 339 (759)
T ss_pred hhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhh
Confidence 999999999888888899999999999999999999999999999888766 5566789999999999999999999999
Q ss_pred HHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc----hHHHHHhHHHHHHHhcCCCChHHHHHHH
Q 007863 304 VTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG----KDATIEQLLPIFLSLLKDEFPDVRLNII 379 (587)
Q Consensus 304 l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~ 379 (587)
+..+...++++.......+.+..+++|..|.+|.+.+.-...+..... .....+.++|.+..+..|.+..||.+.+
T Consensus 340 ~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a 419 (759)
T KOG0211|consen 340 FSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALA 419 (759)
T ss_pred hhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHh
Confidence 999999999865556678888899999999999999999888887776 3344567789999999999999999999
Q ss_pred HHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHH---HHhhChhhHHHHHHHHHHHHcCCCchHHHHHH
Q 007863 380 SKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL---ASQLGVGFFDDKLGALCMQWLKDKVYSIRDAA 456 (587)
Q Consensus 380 ~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l---~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a 456 (587)
.....+.+.+|.+.....+.|.+...++|..+.||......+... ....|.....+..+|.+..+..|..|++|.+.
T Consensus 420 ~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ai 499 (759)
T KOG0211|consen 420 SVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAI 499 (759)
T ss_pred ccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHH
Confidence 999999998888877788999999999999999999999655433 33446666778899999999999999999999
Q ss_pred HHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHH
Q 007863 457 ANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAK 536 (587)
Q Consensus 457 ~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~ 536 (587)
+..+..++...|..++.+.+-+.+...+.|..+.+|.++...+..++..+|.+|....++|.++.+..++++.+|.+.+.
T Consensus 500 l~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~ 579 (759)
T KOG0211|consen 500 LEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLF 579 (759)
T ss_pred HHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHH
Confidence 99999999999988888888888888899999999999999999999999999999999999999999989999999999
Q ss_pred HHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhh
Q 007863 537 VLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 585 (587)
Q Consensus 537 ~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~ 585 (587)
++..+.+.+|.+.+.+.++|.+..+..|++++||.++++.|..+...+-
T Consensus 580 si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~ 628 (759)
T KOG0211|consen 580 SIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLD 628 (759)
T ss_pred HHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999988764
No 5
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-29 Score=236.73 Aligned_cols=572 Identities=20% Similarity=0.189 Sum_probs=402.2
Q ss_pred CcccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHH-----------------------
Q 007863 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEV----------------------- 63 (587)
Q Consensus 7 ~~~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v----------------------- 63 (587)
-+..+..+++.-.|+|+++|..+...+...-. .| .+...|+=.|.+..+.+...
T Consensus 11 ~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~--~p-dfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~ 87 (885)
T KOG2023|consen 11 GLQQLAQLLKNSQSPNSETRNNVQEKLEQFNL--FP-DFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEV 87 (885)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhc--cc-chhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHH
Confidence 34567888888889999999999988876532 22 23344443333222222222
Q ss_pred ----HHHHHHHhccccc--------------CcCCcchHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcCh------
Q 007863 64 ----LLAMAEELGVFIP--------------YVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE------ 119 (587)
Q Consensus 64 ----~~~~~~~l~~~~~--------------~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~------ 119 (587)
+......+|.--+ .-++-.+.+.++|-|.+++.+++....+.|..+|..+|+....
T Consensus 88 ~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~ 167 (885)
T KOG2023|consen 88 LDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDV 167 (885)
T ss_pred HHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhc
Confidence 2222222221111 1123446789999999999999999999999999999986532
Q ss_pred -hhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHh
Q 007863 120 -QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE---ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE 195 (587)
Q Consensus 120 -~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~---~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~ 195 (587)
+.....++|-+.++.++.++..|..|+..+..+...-+. ...+.+++.+..+..|.++.||+..|.++..+.+..+
T Consensus 168 ~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~ 247 (885)
T KOG2023|consen 168 LTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP 247 (885)
T ss_pred ccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH
Confidence 223456788888888888999999888766555444333 2678899999999999999999999999999998776
Q ss_pred h--hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh----hhhhhchHHHHHHh----------cC--------
Q 007863 196 A--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNF----------SQ-------- 251 (587)
Q Consensus 196 ~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~----------~~-------- 251 (587)
+ ....+.++.+..+..+|.+.+|...|++.+..+++.--. ..+.+.++|.+..- +.
T Consensus 248 dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~v 327 (885)
T KOG2023|consen 248 DKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESV 327 (885)
T ss_pred HhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccC
Confidence 5 245566778888888999999999999999998876432 23445566665431 11
Q ss_pred ----------------------------C----------CchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCCh
Q 007863 252 ----------------------------D----------KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE 293 (587)
Q Consensus 252 ----------------------------d----------~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~ 293 (587)
| .+|..|+..+.+|..++..++.+. .+.++|.+.+.+...+
T Consensus 328 pDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el-L~~l~PlLk~~L~~~~ 406 (885)
T KOG2023|consen 328 PDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL-LPILLPLLKEHLSSEE 406 (885)
T ss_pred CchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHH-HHHHHHHHHHHcCcch
Confidence 0 139999999999999998887654 4568899999999999
Q ss_pred HHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHH---HHhcC
Q 007863 294 AEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF---LSLLK 368 (587)
Q Consensus 294 ~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l---~~~l~ 368 (587)
|.||++++-++|.+++.+..- .+++.++|.+..++.|+.+-||...|..++++++.+-.+...+++.|.+ ...+-
T Consensus 407 W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~ll 486 (885)
T KOG2023|consen 407 WKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLL 486 (885)
T ss_pred hhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHh
Confidence 999999999999999976543 5668899999999999999999999999999988775443334444544 44556
Q ss_pred CCChHHHHHHHHHhHHhhhhhchhh--HhhhhHHHHHHHh---cCCCcHHHHHHHHHHHHHHHhhC----hhhHHHHHHH
Q 007863 369 DEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELA---EDRHWRVRLAIIEYIPLLASQLG----VGFFDDKLGA 439 (587)
Q Consensus 369 d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~~~~~l~~~~---~~~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~ 439 (587)
|.+..|+.+|+++++.+-+..|.+- +.+.++..+...+ +.+|-.+ ...+++.++..+| ...+.+.++|
T Consensus 487 D~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlI---LYDAIgtlAdsvg~~Ln~~~YiqiLmP 563 (885)
T KOG2023|consen 487 DSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLI---LYDAIGTLADSVGHALNKPAYIQILMP 563 (885)
T ss_pred cccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceeh---HHHHHHHHHHHHHHhcCcHHHHHHhcc
Confidence 8999999999999999988777552 2223333333222 2344443 3445555565554 3444556666
Q ss_pred HHHH---HcCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHh-----------hhcC-----CccHHHHHHHHH
Q 007863 440 LCMQ---WLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLE-----------MINN-----PHYLYRMTILQA 498 (587)
Q Consensus 440 ~l~~---~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~-----------~l~~-----~~~~~r~~a~~~ 498 (587)
.+++ .+.|++.++ ---++|+..++..+|..| +...+....+. ...+ |+...-..++..
T Consensus 564 PLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL 642 (885)
T KOG2023|consen 564 PLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDL 642 (885)
T ss_pred HHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHH
Confidence 6553 467777664 456788888888877654 11112111111 1122 244455688899
Q ss_pred HHHhhcccChH----HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCCCccHHHH
Q 007863 499 ISLLAPVMGSE----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFF 572 (587)
Q Consensus 499 l~~l~~~~~~~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~Vr~~ 572 (587)
++.+++.+|.. .....++..++.++.|+.|+||+.+...||-+....... +....++|.+..=++-..-.|-.+
T Consensus 643 ~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nN 722 (885)
T KOG2023|consen 643 LSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNN 722 (885)
T ss_pred HhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHH
Confidence 99999877754 235678899999999999999999999999998876332 344556666664334444568999
Q ss_pred HHHHHHHHHHHhhc
Q 007863 573 ATQALQSKDQVMMS 586 (587)
Q Consensus 573 a~~al~~l~~~~~~ 586 (587)
|.+|+|.++..+|.
T Consensus 723 A~WAiGeia~k~g~ 736 (885)
T KOG2023|consen 723 AIWAIGEIALKMGL 736 (885)
T ss_pred HHHHHHHHHHHhch
Confidence 99999999988874
No 6
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.96 E-value=4.4e-25 Score=209.16 Aligned_cols=559 Identities=18% Similarity=0.254 Sum_probs=398.5
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccc-ccCCch-HH-HHHHHHHhccccc----CcC---
Q 007863 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDD-EV-LLAMAEELGVFIP----YVG--- 79 (587)
Q Consensus 10 ~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~-~v-~~~~~~~l~~~~~----~~~--- 79 (587)
.|..++-.+++..+..|..|++.|..-+..+|+.-..+.++|.+.+ .+++.+ +. ...+-+.|..+.. |+.
T Consensus 364 ~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkIL 443 (1172)
T KOG0213|consen 364 KIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKIL 443 (1172)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeE
Confidence 3778888999999999999999999999999998888999998877 445433 22 2223333333211 111
Q ss_pred --------CcchH-----hhhhh----------HHHhh---hcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHh
Q 007863 80 --------GLEYA-----NVLLP----------PLETL---CTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRL 133 (587)
Q Consensus 80 --------~~~~~-----~~l~~----------~l~~l---~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l 133 (587)
++++- ..++. .+..+ +.+.|+.||+...++++.+++.++- +.++||+...
T Consensus 444 vViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasalgi----p~llpfLkav 519 (1172)
T KOG0213|consen 444 VVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALGI----PALLPFLKAV 519 (1172)
T ss_pred EEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCc----HHHHHHHHHH
Confidence 11100 11111 11111 2466889999999999999998874 5789999999
Q ss_pred hcCC-CCcchhhHHhhhhhhccCCC---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHHHH-
Q 007863 134 AAGE-WFTARVSSCGLFHVAYPSAP---EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMS- 205 (587)
Q Consensus 134 ~~~~-~~~~r~~a~~l~~~~~~~~~---~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~- 205 (587)
+.+. +|..|..++.+...++...+ -.+...++.++..++.|.+..||.-++-++..+++..++ +.+...+.|
T Consensus 520 c~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpL 599 (1172)
T KOG0213|consen 520 CGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPL 599 (1172)
T ss_pred hccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 9887 77888777776655443322 247788999999999999999999999999999887653 222222222
Q ss_pred ----------------------------------------HHHHhcccCchhHHHHHHHHHHHHhcccCh--hhhhhch-
Q 007863 206 ----------------------------------------IFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHI- 242 (587)
Q Consensus 206 ----------------------------------------~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l- 242 (587)
++..-.++++++.++.....+..++...+- ......+
T Consensus 600 wkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dil 679 (1172)
T KOG0213|consen 600 WKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDIL 679 (1172)
T ss_pred HHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhh
Confidence 222223344555555555555554433221 1111111
Q ss_pred --------------------------------------HHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCccc----c
Q 007863 243 --------------------------------------LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS----D 280 (587)
Q Consensus 243 --------------------------------------~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~----~ 280 (587)
+.-+..-+.|.++..|+.+++....+...+|...... .
T Consensus 680 p~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~ 759 (1172)
T KOG0213|consen 680 PEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEER 759 (1172)
T ss_pred HHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHH
Confidence 2222223356677777777777777777666533322 2
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhh---chHHH
Q 007863 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL---GKDAT 355 (587)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~---~~~~~ 355 (587)
++..+.-.++..+.+.. ..+..++.+.+.++. ..+.+.+...+...++++++.||..+++.++.++..+ +.+..
T Consensus 760 lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~ 838 (1172)
T KOG0213|consen 760 LIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKL 838 (1172)
T ss_pred HHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHH
Confidence 33333333433332222 456677777777776 4667788888889999999999999999999887665 44555
Q ss_pred HHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhH---hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh
Q 007863 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 432 (587)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~---~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~ 432 (587)
..++--.+...+....++|--..+.++..|...+|.... ...++|.+...+++.+.+|..+++..++.++.....-.
T Consensus 839 m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v 918 (1172)
T KOG0213|consen 839 MGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYV 918 (1172)
T ss_pred HHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccC
Confidence 667777788899999999999999999999988875432 24688888888999999999999999999987533211
Q ss_pred HHHHHHHHHH---HHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH
Q 007863 433 FDDKLGALCM---QWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE 509 (587)
Q Consensus 433 ~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~ 509 (587)
-....+.++. .++.....++|.+|.+.+|.+++..|+. .++..+++.+...+.+.|.+..-+|+.+++.+++-
T Consensus 919 ~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq----dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF 994 (1172)
T KOG0213|consen 919 SAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF 994 (1172)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH----HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch
Confidence 1234444444 4567888999999999999999999975 46777777777777888988999999999888875
Q ss_pred HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863 510 ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 510 ~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~ 581 (587)
.++|.+.+-..-|..+|....+++++.+++.++.- .+.-.+.|.|...+.|.|+.-|..|..++..++
T Consensus 995 ----tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 995 ----TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred ----hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 68888888888999999999999999999998863 566789999999999999999999999988764
No 7
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9e-24 Score=201.50 Aligned_cols=525 Identities=17% Similarity=0.181 Sum_probs=372.8
Q ss_pred CchHHHHHHHHHhcccccCcCCcchHhhhhhHHHhhhcCchh-HHHHHHHHHHHHHHhhcChhhHhhh---hH-HHHHHh
Q 007863 59 DDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEET-CVRDKAVESLCRIGSQMREQDVVEH---FI-PLVKRL 133 (587)
Q Consensus 59 ~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~~---ll-~~~~~l 133 (587)
..+.....++.+++.++..==.....+.+++.+..-..++.+ .+++.++++++.+|+.+.++..... ++ .++...
T Consensus 102 ~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gm 181 (859)
T KOG1241|consen 102 PEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGM 181 (859)
T ss_pred CCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhc
Confidence 455555555565555543211123456666666655555544 5999999999999999999865433 22 333333
Q ss_pred hcCC-CCcchhhHHhhhhhhcc----CCC-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHHH
Q 007863 134 AAGE-WFTARVSSCGLFHVAYP----SAP-EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIM 204 (587)
Q Consensus 134 ~~~~-~~~~r~~a~~l~~~~~~----~~~-~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~ 204 (587)
.+.+ +..+|.+|...+....+ ++. +..++.+++.+.+..+.++.++|.++.++|.+++...-+ ....+.++
T Consensus 182 rk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alf 261 (859)
T KOG1241|consen 182 RKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALF 261 (859)
T ss_pred cccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 56788888775544322 232 347888999999999999999999999999999875433 22333466
Q ss_pred HHHHHhcccCchhHHHHHHHHHHHHhcccCh---------hh------------hhhchHHHHHHhcC-------CCchH
Q 007863 205 SIFEELTQDDQDSVRLLAVEGCGALGKLLEP---------QD------------CVAHILPVIVNFSQ-------DKSWR 256 (587)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---------~~------------~~~~l~~~l~~~~~-------d~~~~ 256 (587)
++-..-..++++.|...+++.+..+++.--+ +. -.+.++|.+++++. |++|.
T Consensus 262 aitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWn 341 (859)
T KOG1241|consen 262 AITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWN 341 (859)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCc
Confidence 6666667788899999999999977643111 00 12357787777653 35799
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhHHHHHhHhcCCCcH
Q 007863 257 VRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQ 333 (587)
Q Consensus 257 vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~ 333 (587)
.-++|..||.-++...+++.. +.++|++.+.++.++|+-|.+++-++|.+.....+. ......+|.+..+..|++-
T Consensus 342 p~kAAg~CL~l~A~~~~D~Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl 420 (859)
T KOG1241|consen 342 PAKAAGVCLMLFAQCVGDDIV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSL 420 (859)
T ss_pred HHHHHHHHHHHHHHHhcccch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchh
Confidence 999999999999998887664 479999999999999999999999999998865544 3456788999999999999
Q ss_pred HHHHHHHHHHHhhhhhhc----hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch-------h-hHhhhhHHH
Q 007863 334 HVRSALATVIMGMAPILG----KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-------D-LLSQSLLPA 401 (587)
Q Consensus 334 ~vr~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~-------~-~~~~~~~~~ 401 (587)
.||.++.++++.+++.++ +.......++.+...++|. |.|-..+++++..+++.... . ...+.+.+.
T Consensus 421 ~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~i 499 (859)
T KOG1241|consen 421 WVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAI 499 (859)
T ss_pred hhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHH
Confidence 999999999999998775 3444556667777777775 78888888888777754311 0 011122222
Q ss_pred HHHHhc-----C-CCcHHHHHHHHHHHHHHHhhC----------------------------------------------
Q 007863 402 IVELAE-----D-RHWRVRLAIIEYIPLLASQLG---------------------------------------------- 429 (587)
Q Consensus 402 l~~~~~-----~-~~~~vr~~~~~~l~~l~~~~~---------------------------------------------- 429 (587)
+..+++ | .....|.++.++++.+.+..+
T Consensus 500 i~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~L 579 (859)
T KOG1241|consen 500 IGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTL 579 (859)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHH
Confidence 222221 1 234566666666666544321
Q ss_pred --------h--hhHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhh-cCCccHHHHHH
Q 007863 430 --------V--GFFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMI-NNPHYLYRMTI 495 (587)
Q Consensus 430 --------~--~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l-~~~~~~~r~~a 495 (587)
+ ..+.+.++..+++.++. .+.-|.+.|..+++.++..+|..| +.+.+.|.+..-+ +-.++.|-.++
T Consensus 580 q~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~a 659 (859)
T KOG1241|consen 580 QSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAA 659 (859)
T ss_pred HHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 1 11234567777777766 455678889999999999999886 5688899888777 55678899999
Q ss_pred HHHHHHhhcccChH--HHHHhHHHHHHhhcCCC--CccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhc---CCC-
Q 007863 496 LQAISLLAPVMGSE--ITCSQLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELS---EDP- 565 (587)
Q Consensus 496 ~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~---~d~- 565 (587)
+..++.++..++.+ +|...++..++.+++++ ..+|+-..+.+++-|.-.++.+ .+.+.++|.+.... .|+
T Consensus 660 VglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~ 739 (859)
T KOG1241|consen 660 VGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPA 739 (859)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCC
Confidence 99999999888776 36788999999999987 5788999999999998888764 77788999988854 233
Q ss_pred -------CccHHHHHHHHHHHHHHHhh
Q 007863 566 -------DVDVRFFATQALQSKDQVMM 585 (587)
Q Consensus 566 -------~~~Vr~~a~~al~~l~~~~~ 585 (587)
.-.+|..+.+|+--+.+.+|
T Consensus 740 ~~~~~dYvd~LRe~~leay~gi~qglk 766 (859)
T KOG1241|consen 740 DDSMVDYVDELREGILEAYTGIIQGLK 766 (859)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 23578999999888877776
No 8
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.5e-25 Score=208.56 Aligned_cols=492 Identities=17% Similarity=0.171 Sum_probs=352.1
Q ss_pred hhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhh----ccCCCHHH
Q 007863 85 NVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVA----YPSAPEAL 160 (587)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~----~~~~~~~~ 160 (587)
..+..+|.+ ..+++..+|+.+...+.++-.. .++..++.-.+.++...+ ...|..|--++..- +...+.+.
T Consensus 13 ~ql~~lLk~-s~Spn~~~~~~~~~~leq~~~~---pdfnnYL~~IL~~~~~~d-~~~Rs~aGLlLKNnvr~~~~~~~~~~ 87 (885)
T KOG2023|consen 13 QQLAQLLKN-SQSPNSETRNNVQEKLEQFNLF---PDFNNYLIYILIRAKSED-VPTRSLAGLLLKNNVRGHYNSIPSEV 87 (885)
T ss_pred HHHHHHHHh-ccCCChHHHHHHHHHHHHHhcc---cchhceeeEEEecccccc-hhHHHHhhhhHhccccccccCCChHH
Confidence 333344433 2467888888888777776552 234444444444443333 33355444444332 22334456
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh-----
Q 007863 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----- 235 (587)
Q Consensus 161 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----- 235 (587)
.+.+..-+...+.|+++.+|....-.+..++...+- ..++.++|.+.+++..++......|..+|.++.+....
T Consensus 88 ~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~-~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~ 166 (885)
T KOG2023|consen 88 LDYIKSECLHGLGDASPLIRATVGIVITTIASTGGL-QHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSD 166 (885)
T ss_pred HHHHHHHHHhhccCchHHHHhhhhheeeeeeccccc-ccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhh
Confidence 777777888889999999999888888887776544 56699999999999999989999999999998876543
Q ss_pred --hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh
Q 007863 236 --QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 311 (587)
Q Consensus 236 --~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 311 (587)
..-.+.++|.+.++.+++++++|..|..++..+.-...... ..+.++..+..+.+|++++||+..+.++.-+.+..
T Consensus 167 ~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr 246 (885)
T KOG2023|consen 167 VLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVR 246 (885)
T ss_pred cccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhc
Confidence 12244588999999999999999999999988764433211 12357788888889999999999999999998875
Q ss_pred CHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch----HHHHHhHHHHHHHhc----------C-CC----
Q 007863 312 NPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK----DATIEQLLPIFLSLL----------K-DE---- 370 (587)
Q Consensus 312 ~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l----------~-d~---- 370 (587)
... ...+.++.++....+|.++.|-..||+.+..+++.--. ..+.+.++|++...+ + ++
T Consensus 247 ~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~ 326 (885)
T KOG2023|consen 247 PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDES 326 (885)
T ss_pred HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcccccc
Confidence 544 45677888889999999999999999999988865421 235567788776432 2 00
Q ss_pred -----------------------------------------ChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCC
Q 007863 371 -----------------------------------------FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR 409 (587)
Q Consensus 371 -----------------------------------------~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~ 409 (587)
+.+.|+-.+.+|..++..+|.+. .+.++|.+.+.+.++
T Consensus 327 vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el-L~~l~PlLk~~L~~~ 405 (885)
T KOG2023|consen 327 VPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL-LPILLPLLKEHLSSE 405 (885)
T ss_pred CCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHH-HHHHHHHHHHHcCcc
Confidence 14578777888888887777554 478899999999999
Q ss_pred CcHHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh---hhhhchHHHHHhhh
Q 007863 410 HWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMI 484 (587)
Q Consensus 410 ~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~l 484 (587)
.|.+|.+.+-++|.+++.+-. -...+.+.|.++.++.|..+-||.-++-+|++.....-.+ .+...++..+.+.+
T Consensus 406 ~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~l 485 (885)
T KOG2023|consen 406 EWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRL 485 (885)
T ss_pred hhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHH
Confidence 999999999999999876522 2234678999999999999999999999888877654322 23344555566667
Q ss_pred cCCccHHHHHHHHHHHHhhcccChH--HHHHhHHHHHHhhcCC---CCccHHHHHHHHHHHHHhhh----chHHHHHhHH
Q 007863 485 NNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKD---RVPNIKFNVAKVLQSLIPIV----DQSVVEKSIR 555 (587)
Q Consensus 485 ~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d---~~~~vR~~a~~~l~~l~~~~----~~~~~~~~i~ 555 (587)
-|.|.+|+++|+.++..+-+.-+.+ ++.++++..+...++- ++--+= ..+++.++... ....+.+.++
T Consensus 486 lD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlIL---YDAIgtlAdsvg~~Ln~~~YiqiLm 562 (885)
T KOG2023|consen 486 LDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLIL---YDAIGTLADSVGHALNKPAYIQILM 562 (885)
T ss_pred hcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehH---HHHHHHHHHHHHHhcCcHHHHHHhc
Confidence 7889999999999999888776655 3567777776665542 333333 34444444443 3345556666
Q ss_pred HHHHH---hcCCCCccHHHHHHHHHHHHHHHhhcC
Q 007863 556 PCLVE---LSEDPDVDVRFFATQALQSKDQVMMSG 587 (587)
Q Consensus 556 ~~l~~---l~~d~~~~Vr~~a~~al~~l~~~~~~~ 587 (587)
|.|.+ +++|+|+++ .-..+++.++++.||++
T Consensus 563 PPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~g 596 (885)
T KOG2023|consen 563 PPLIEKWELLSDSDKDL-FPLLECLSSIASALGVG 596 (885)
T ss_pred cHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhcc
Confidence 66665 688999887 67889999999999875
No 9
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2e-23 Score=199.10 Aligned_cols=571 Identities=17% Similarity=0.170 Sum_probs=411.0
Q ss_pred HHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccccc-CCch-HHHHHHHHHhcccccCcCCcc---hHhhhh
Q 007863 14 LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDD-EVLLAMAEELGVFIPYVGGLE---YANVLL 88 (587)
Q Consensus 14 l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~~~-~v~~~~~~~l~~~~~~~~~~~---~~~~l~ 88 (587)
++..|+++.+..+..|.+.+..+|...-|...|++|++.|.... +... .++.+..+++|.+++.+.... ....++
T Consensus 95 il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iL 174 (859)
T KOG1241|consen 95 ILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDIL 174 (859)
T ss_pred HHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHH
Confidence 45778899999999999999999998889999999999887633 3333 588899999999988665322 223344
Q ss_pred hHHHhhh--cCchhHHHHHHHHHHHHHHh----hcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhh----ccCCCH
Q 007863 89 PPLETLC--TVEETCVRDKAVESLCRIGS----QMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVA----YPSAPE 158 (587)
Q Consensus 89 ~~l~~l~--~~~~~~vr~~a~~~l~~l~~----~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~----~~~~~~ 158 (587)
..+.+-. ..++..||.+|.++|..-.+ .+..+.-+.++++.+.+...+++..++.+|...+..+ ++...+
T Consensus 175 taIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~ 254 (859)
T KOG1241|consen 175 TAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEP 254 (859)
T ss_pred HHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433332 35688999999999987543 3444555677888888888888888888877644333 444444
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh-------------h--------hhHHHHHHHHHHhcc-----
Q 007863 159 ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-------------A--------HLKSEIMSIFEELTQ----- 212 (587)
Q Consensus 159 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-------------~--------~~~~~i~~~l~~l~~----- 212 (587)
-..+.++++....+.+++..|...+++...++++.--+ + ...+.++|.+.+++.
T Consensus 255 yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~ 334 (859)
T KOG1241|consen 255 YMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDED 334 (859)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCC
Confidence 45666888888888999999999999999988764211 1 112356777666653
Q ss_pred --cCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHH
Q 007863 213 --DDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVR 287 (587)
Q Consensus 213 --d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~ 287 (587)
+++|+.-++|..||.-+++..+++ +.+.++|++.+-++.++|+-|.+++.++|.+...-.+.. .....+|.+..
T Consensus 335 ~d~DdWnp~kAAg~CL~l~A~~~~D~-Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~ 413 (859)
T KOG1241|consen 335 DDDDDWNPAKAAGVCLMLFAQCVGDD-IVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIIN 413 (859)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccc-chhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHH
Confidence 235788899999999888877655 677999999999999999999999999999876433211 12357888999
Q ss_pred hcCCChHHHHHHHHHhHHHHHHhhCH----HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch-----------
Q 007863 288 LLRDNEAEVRIAAAGKVTKICRILNP----ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK----------- 352 (587)
Q Consensus 288 ~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----------- 352 (587)
+..|+.-.||..+..+|+++++.+.. +.+....++.+...++| .++|-..+|+++..+++....
T Consensus 414 lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~ 492 (859)
T KOG1241|consen 414 LMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPA 492 (859)
T ss_pred HhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 99999999999999999999997653 34445566666666655 567777788887777754421
Q ss_pred HHHHHhHHHHHHHhcC--C-CChHHHHHHHHHhHHhhhhhch--------------------------------------
Q 007863 353 DATIEQLLPIFLSLLK--D-EFPDVRLNIISKLDQVNQVIGI-------------------------------------- 391 (587)
Q Consensus 353 ~~~~~~l~~~l~~~l~--d-~~~~vr~~a~~~l~~i~~~~~~-------------------------------------- 391 (587)
..+.+.++..+++... | .+.+.|.++.++|.++++....
T Consensus 493 t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQ 572 (859)
T KOG1241|consen 493 TPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQ 572 (859)
T ss_pred chhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHH
Confidence 0122222222322211 2 3467888888888877654321
Q ss_pred ------------------hhHhhhhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHc-CCCc
Q 007863 392 ------------------DLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-KDKV 449 (587)
Q Consensus 392 ------------------~~~~~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d~~ 449 (587)
....+.++..+.+.++. ++..+...++-.++.++..+|..+ +.+.+.|.+...+ +-.+
T Consensus 573 s~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e 652 (859)
T KOG1241|consen 573 SLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQE 652 (859)
T ss_pred HHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchH
Confidence 01223455555555555 445567778888888888888765 3467888888888 5567
Q ss_pred hHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCc--cHHHHHHHHHHHHhhcccChH--HHHHhHHHHHHhhc
Q 007863 450 YSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPH--YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINAS 523 (587)
Q Consensus 450 ~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l 523 (587)
..|-..|+...|.+++.++.++ +.+.++..+.+.+.+++ ..++-..+.+++.|+-.+|.+ .|.+.++|.+....
T Consensus 653 ~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as 732 (859)
T KOG1241|consen 653 YQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQAS 732 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 8899999999999999999886 56788888888888874 457888999999999888875 46788888887765
Q ss_pred ---CCC--------CccHHHHHHHHHHHHHhhhch-------HHHHHhHHHHHHHhcCCCCc--cHHHHHHHHHHHHHHH
Q 007863 524 ---KDR--------VPNIKFNVAKVLQSLIPIVDQ-------SVVEKSIRPCLVELSEDPDV--DVRFFATQALQSKDQV 583 (587)
Q Consensus 524 ---~d~--------~~~vR~~a~~~l~~l~~~~~~-------~~~~~~i~~~l~~l~~d~~~--~Vr~~a~~al~~l~~~ 583 (587)
.|+ ...+|.+++++...+...++. .++...++..+.....|++- .+...|...++.++.+
T Consensus 733 ~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~ 812 (859)
T KOG1241|consen 733 SVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATM 812 (859)
T ss_pred hccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 222 346999999999999888763 14556666666666665544 4677788889999998
Q ss_pred hhc
Q 007863 584 MMS 586 (587)
Q Consensus 584 ~~~ 586 (587)
+|+
T Consensus 813 fg~ 815 (859)
T KOG1241|consen 813 FGK 815 (859)
T ss_pred ccc
Confidence 885
No 10
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.94 E-value=7.5e-22 Score=192.32 Aligned_cols=566 Identities=14% Similarity=0.183 Sum_probs=377.8
Q ss_pred HHHHHhcCccHHHHHHHhhcHHHHH----HHhChhhhhhhhcccccc-ccCCchHHHHHHHHHhcccccCcCCcchHhhh
Q 007863 13 VLIDELKNDDIQLRLNSIRRLSTIA----RALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVL 87 (587)
Q Consensus 13 ~l~~~l~s~d~~~R~~a~~~l~~~~----~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l 87 (587)
.++++|.|+|.+.|++|-..|.+=. ..++-+.. ..++..+.+ +-|.++||+..+.+++|-+...++... ...+
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe-~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~-le~~ 86 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSE-RKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQ-LETI 86 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccch-hHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHH-HHHH
Confidence 7889999999999999987775321 22222222 233333333 335688999999999999988777332 3333
Q ss_pred hhHHHhhhcCchhHHHHHHHHHHHHHHhhcCh-------hhHhhhhHHHHHHhhc--CCCCcchhhHHhhhhhhccCCCH
Q 007863 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRE-------QDVVEHFIPLVKRLAA--GEWFTARVSSCGLFHVAYPSAPE 158 (587)
Q Consensus 88 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~-------~~~~~~ll~~~~~l~~--~~~~~~r~~a~~l~~~~~~~~~~ 158 (587)
..-|..-+-+.....|..+.-.|.....+++| ..+...++|.+..... .+.+.++..++.+++....+.+.
T Consensus 87 ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ 166 (1233)
T KOG1824|consen 87 VENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT 166 (1233)
T ss_pred HHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc
Confidence 33332222345667788888888888877775 2234456666655432 33566888888887776555442
Q ss_pred ---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh
Q 007863 159 ---ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 235 (587)
Q Consensus 159 ---~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (587)
+....++..+...+..+...||+.++.+|+.++...+...+...+...+..+.+..++..-+..+.+++.++...+.
T Consensus 167 ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~ 246 (1233)
T KOG1824|consen 167 LLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH 246 (1233)
T ss_pred cCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 36667777777777888889999999999999999988777776666777777766666666778888888877765
Q ss_pred --hhhhhchHHHHHHhc---CCCchHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcC------------------
Q 007863 236 --QDCVAHILPVIVNFS---QDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLR------------------ 290 (587)
Q Consensus 236 --~~~~~~l~~~l~~~~---~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~------------------ 290 (587)
....+.+.|.+.+.+ +..+.+.|+.++++++.+....+.+. .+++++..+.+.+.
T Consensus 247 r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ 326 (1233)
T KOG1824|consen 247 RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFL 326 (1233)
T ss_pred hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhh
Confidence 334677899999888 67788999999999999988766543 23344444444331
Q ss_pred ----------------CChHHHHHHHHHhHHHHHHhhCH--HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch
Q 007863 291 ----------------DNEAEVRIAAAGKVTKICRILNP--ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 352 (587)
Q Consensus 291 ----------------d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 352 (587)
|..|.||++|++++..+...... ..+...+-|.+...+++..+.||.-.+.++..+..+.+.
T Consensus 327 ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~ 406 (1233)
T KOG1824|consen 327 EDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP 406 (1233)
T ss_pred hccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC
Confidence 23488999999999887664221 123344555555555666666665555554443322210
Q ss_pred --------H---------------HHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhh-----------------------
Q 007863 353 --------D---------------ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN----------------------- 386 (587)
Q Consensus 353 --------~---------------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~----------------------- 386 (587)
+ .....++..+.+.+++.+...|..++..|..++
T Consensus 407 ~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~ 486 (1233)
T KOG1824|consen 407 VIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLN 486 (1233)
T ss_pred CcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcC
Confidence 0 001123333333344433334444444444433
Q ss_pred --------------------hhhchhhH---hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC---------hhhHH
Q 007863 387 --------------------QVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---------VGFFD 434 (587)
Q Consensus 387 --------------------~~~~~~~~---~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~---------~~~~~ 434 (587)
..-+++.+ .+.+.|.+.....|+.+++-.+++.....+++.+- ...+.
T Consensus 487 DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v 566 (1233)
T KOG1824|consen 487 DKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYV 566 (1233)
T ss_pred CccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhH
Confidence 22233322 23455666666788999999999999888887652 22233
Q ss_pred HHHHHHHHHHc--CCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhc---ccC
Q 007863 435 DKLGALCMQWL--KDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRMTILQAISLLAP---VMG 507 (587)
Q Consensus 435 ~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~---~~~ 507 (587)
..+....++.+ +|.+.+||+.|+.++|.++..+|... .....+|.+.+.++ +...|.+|++++..++. .+.
T Consensus 567 ~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~ 644 (1233)
T KOG1824|consen 567 KTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDID 644 (1233)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceee
Confidence 44444444444 57889999999999999999998431 23445555555553 56789999999999876 334
Q ss_pred hHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch---HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863 508 SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 508 ~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~ 582 (587)
......+++|.+..++.......|.+.+.++..+.+.++. ....+.++..+..+.+++|-.|-..|...+..+..
T Consensus 645 l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~ 722 (1233)
T KOG1824|consen 645 LSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAI 722 (1233)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 4456788999999999888889999999999999887754 34556677777778999999999988888877654
No 11
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.93 E-value=1.1e-21 Score=212.40 Aligned_cols=560 Identities=14% Similarity=0.136 Sum_probs=400.1
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhh---hhhhhccccccccC--CchHHHHHHHHHhcccccCcCCcchH
Q 007863 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEER---TRKELIPFLSENND--DDDEVLLAMAEELGVFIPYVGGLEYA 84 (587)
Q Consensus 10 ~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~---~~~~l~p~l~~~~~--~~~~v~~~~~~~l~~~~~~~~~~~~~ 84 (587)
-+..+++.|.++++..+..|+..+..++...+... .....+|.+.+.+. ++..+|..++.+|++++.. +.++.
T Consensus 190 aVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~--s~e~r 267 (2102)
T PLN03200 190 GVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQ--SKEAK 267 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcC--CHHHH
Confidence 46788899999999999999887766654322111 12334666666553 3458999999999888752 22322
Q ss_pred h-----hhhhHHHhhhcCch---------hHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCC-CCcchhhHHhhh
Q 007863 85 N-----VLLPPLETLCTVEE---------TCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGE-WFTARVSSCGLF 149 (587)
Q Consensus 85 ~-----~l~~~l~~l~~~~~---------~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~-~~~~r~~a~~l~ 149 (587)
. ..+|.|..++..++ ...++.|+.+|++++... ..++|++.+..++. +......++..+
T Consensus 268 ~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~------~~ll~~L~~ll~s~rd~~~~ada~gAL 341 (2102)
T PLN03200 268 QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM------SALILYLGELSESPRSPAPIADTLGAL 341 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc------hhhHHHHHHhhcccchHHHHHHHHhhH
Confidence 2 22345555444333 456899999999999864 45777887766554 222233344455
Q ss_pred hhhcc---CCCHHHH----HHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHH
Q 007863 150 HVAYP---SAPEALK----TELRTIYRQLCQDDMPM-VRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVR 219 (587)
Q Consensus 150 ~~~~~---~~~~~~~----~~l~~~l~~l~~~~~~~-vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr 219 (587)
..+.. ...+... ..+.+.+..++.++++. ++..+.++|..++.+..- --......+.+..++...+.+++
T Consensus 342 ayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ 421 (2102)
T PLN03200 342 AYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQ 421 (2102)
T ss_pred HHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHH
Confidence 44422 2211111 13457788999988766 477788887554332211 11123456678888888888999
Q ss_pred HHHHHHHHHHhcccCh---hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCCh
Q 007863 220 LLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNE 293 (587)
Q Consensus 220 ~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~ 293 (587)
..++.++..+...-.. .......+|.+.+++.+.+..+|..++..++.++..-.. .......+|.+.+++..++
T Consensus 422 ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~ 501 (2102)
T PLN03200 422 EELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGS 501 (2102)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence 9999999998865332 112344789999999999999999999999988752111 1122468999999999999
Q ss_pred HHHHHHHHHhHHHHHHhhCHH--H-H-HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCC
Q 007863 294 AEVRIAAAGKVTKICRILNPE--L-A-IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD 369 (587)
Q Consensus 294 ~~vr~~a~~~l~~l~~~~~~~--~-~-~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 369 (587)
..+|+.|+.++++++.. +++ . . ....+|.+.+++++.+++++..++.++..+......+ .++.+..++..
T Consensus 502 ~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-----~I~~Lv~LLls 575 (2102)
T PLN03200 502 QKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-----TISQLTALLLG 575 (2102)
T ss_pred HHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-----HHHHHHHHhcC
Confidence 99999999999999874 221 1 1 2357888999999999999999999999997543322 23556677888
Q ss_pred CChHHHHHHHHHhHHhhhhhchhhH------hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC---hhhHHHHHHHH
Q 007863 370 EFPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGAL 440 (587)
Q Consensus 370 ~~~~vr~~a~~~l~~i~~~~~~~~~------~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~ 440 (587)
+++.++..++..++.+......+.. ....+|.+.+++++++.++++.++..+..++..-. ........+|.
T Consensus 576 dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpP 655 (2102)
T PLN03200 576 DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINP 655 (2102)
T ss_pred CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHH
Confidence 8899999999999888765443321 13578999999999999999999999988875321 11223456888
Q ss_pred HHHHcCCCchHHHHHHHHHHHHHHHHhChhh----hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH--HHHHh
Q 007863 441 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQ 514 (587)
Q Consensus 441 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~ 514 (587)
++.++++.+.++++.++.+|+.+......+. .....+|.+.+++++++..++..++.++.++...-... .....
T Consensus 656 LV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~ 735 (2102)
T PLN03200 656 CIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAED 735 (2102)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcC
Confidence 8899999999999999999999996333221 23568999999999999999999999999999754322 23467
Q ss_pred HHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHH------HHHhHHHHHHHhcCCCCccHHHH--HHHHHHHHHHH
Q 007863 515 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV------VEKSIRPCLVELSEDPDVDVRFF--ATQALQSKDQV 583 (587)
Q Consensus 515 ~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~------~~~~i~~~l~~l~~d~~~~Vr~~--a~~al~~l~~~ 583 (587)
.++.+.+++.+.++..|.+|+.+|.+++...+.+. .....+..|..+++..|.++-.. |..+++.+++.
T Consensus 736 ~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 736 IILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred cHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 78999999999999999999999999998876543 22345677777777777776665 88888888774
No 12
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.92 E-value=2.1e-21 Score=180.85 Aligned_cols=559 Identities=18% Similarity=0.251 Sum_probs=382.7
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccc-ccCCch-H-HHHHHHHHhccccc----Cc----
Q 007863 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDD-E-VLLAMAEELGVFIP----YV---- 78 (587)
Q Consensus 10 ~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~-~-v~~~~~~~l~~~~~----~~---- 78 (587)
.+..++-..++..+..|..+++.|..-+..+|++-..+.++|.+.+ .+++.+ + +...+-+.|..+.. ++
T Consensus 169 ~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkIL 248 (975)
T COG5181 169 DVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKIL 248 (975)
T ss_pred hHHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEE
Confidence 3566778889999999999999999999999999999999998876 344432 2 22233333332211 11
Q ss_pred ---C----Ccch-----Hhh-hhhH------------HHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHh
Q 007863 79 ---G----GLEY-----ANV-LLPP------------LETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRL 133 (587)
Q Consensus 79 ---~----~~~~-----~~~-l~~~------------l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l 133 (587)
| +++. -+. +..+ +.--+.+.|+.||+...++.+.+++.++- +.++||+..+
T Consensus 249 vVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv----~~llpfl~a~ 324 (975)
T COG5181 249 VVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGV----EELLPFLEAL 324 (975)
T ss_pred EEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCc----HHHHHHHHHH
Confidence 0 0110 011 1111 11112567899999999999999999874 5789999999
Q ss_pred hcCC-CCcchhhHHhhhhhhccCCC---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHH
Q 007863 134 AAGE-WFTARVSSCGLFHVAYPSAP---EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSI 206 (587)
Q Consensus 134 ~~~~-~~~~r~~a~~l~~~~~~~~~---~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~ 206 (587)
+.+. .|..|..++.+...++..++ -.+...++.++..++.|....||..++.++..+++..++ +.+...+.|+
T Consensus 325 c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pL 404 (975)
T COG5181 325 CGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPL 404 (975)
T ss_pred hcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHH
Confidence 9887 77778777776655544333 246778889999999999999999999999999998765 3444444554
Q ss_pred HHHhcccCchhHHHHHHHHHHHHhcccCh----------------------hhhhhchHHHHHHh---cCCCchHHHHHH
Q 007863 207 FEELTQDDQDSVRLLAVEGCGALGKLLEP----------------------QDCVAHILPVIVNF---SQDKSWRVRYMV 261 (587)
Q Consensus 207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----------------------~~~~~~l~~~l~~~---~~d~~~~vR~~a 261 (587)
....-++... .-.+...+.+.+....++ ++..+.++-....+ -.+..|..|...
T Consensus 405 w~g~~~hrgk-~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v 483 (975)
T COG5181 405 WEGASQHRGK-ELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQV 483 (975)
T ss_pred HHHHHhcCCc-hHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhh
Confidence 4333322211 111222222222222221 12222222222221 234566666554
Q ss_pred H-HHHHHHHHHh--CC----------------CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---------
Q 007863 262 A-NQLYELCEAV--GP----------------EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--------- 313 (587)
Q Consensus 262 ~-~~l~~l~~~~--~~----------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------- 313 (587)
. +.+..+...- +. ......+..-+...++|+..--|+.++.+...+...+|.
T Consensus 484 ~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErlee 563 (975)
T COG5181 484 SPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEE 563 (975)
T ss_pred cHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHH
Confidence 3 3333332210 10 011233555566666777666677666666555554431
Q ss_pred -----------------------------------HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhh---chHHH
Q 007863 314 -----------------------------------ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL---GKDAT 355 (587)
Q Consensus 314 -----------------------------------~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~---~~~~~ 355 (587)
+.+...++..+.++++++.+.||..+++..+.++..+ |....
T Consensus 564 rl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~ 643 (975)
T COG5181 564 RLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKE 643 (975)
T ss_pred HHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHH
Confidence 1223446666778889999999999999988887655 44455
Q ss_pred HHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhH---hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh
Q 007863 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 432 (587)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~---~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~ 432 (587)
..++-..+...+....++|--..+.++..|....+-..+ ...++|.+...+.+++.++....+..++.++...+.-.
T Consensus 644 l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi 723 (975)
T COG5181 644 LAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYI 723 (975)
T ss_pred HHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccC
Confidence 566777788888899999999999999998877664421 24678888888899999999999999999887543211
Q ss_pred HHHHHHHHH---HHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH
Q 007863 433 FDDKLGALC---MQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE 509 (587)
Q Consensus 433 ~~~~l~~~l---~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~ 509 (587)
-....+.++ +..+...+.++|..|...+|.+.+..|+. .++..+++.+...+.+.|....-+|+.+++.+|+-
T Consensus 724 ~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf 799 (975)
T COG5181 724 GVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ----DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF 799 (975)
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch
Confidence 123344444 44567889999999999999999999975 46667777777778888999999999999988875
Q ss_pred HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863 510 ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 510 ~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~ 581 (587)
.++|.+..-...|..+|....++++..+.+.++.. .+.-.+.|.|...+.|.|+.-|..|...+..+.
T Consensus 800 ----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 800 ----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred ----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 68899988889999999999999999999998874 566788999999999999999999988876653
No 13
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.92 E-value=1.4e-20 Score=204.04 Aligned_cols=562 Identities=11% Similarity=0.076 Sum_probs=396.5
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHHh--Chhh----hhhhhccccccccCC----chHHHHHHHHHhcccccCcC
Q 007863 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARAL--GEER----TRKELIPFLSENNDD----DDEVLLAMAEELGVFIPYVG 79 (587)
Q Consensus 10 ~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~--~~~~----~~~~l~p~l~~~~~~----~~~v~~~~~~~l~~~~~~~~ 79 (587)
.+..|+.-|++.++..|..|+..|..++..- +... .....+|.|...+.+ +.-++..++.+|.+++..-+
T Consensus 100 aIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~e 179 (2102)
T PLN03200 100 CIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTD 179 (2102)
T ss_pred ChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCcc
Confidence 3556778888989999999999999887532 1100 113345655554332 22345566677777765433
Q ss_pred Ccc---hHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcCh---hhHhhhhHHHHHHhhcCC-CCcchhhHHhhhhhh
Q 007863 80 GLE---YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE---QDVVEHFIPLVKRLAAGE-WFTARVSSCGLFHVA 152 (587)
Q Consensus 80 ~~~---~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ll~~~~~l~~~~-~~~~r~~a~~l~~~~ 152 (587)
+.. .....+|.+..+++++++.++..|+.++..++...+. .-+....+|.+.++..++ +..+|..|+..+..+
T Consensus 180 n~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nL 259 (2102)
T PLN03200 180 GFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEAL 259 (2102)
T ss_pred chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 211 1234677888888899999999999999888766432 123456788888888654 557888888888887
Q ss_pred ccCCCHH----HHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccC-chhH
Q 007863 153 YPSAPEA----LKTELRTIYRQLCQDDM---------PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSV 218 (587)
Q Consensus 153 ~~~~~~~----~~~~l~~~l~~l~~~~~---------~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~-~~~v 218 (587)
....++. .....+|.+..++..++ ...++.+..+|++++... ..+++.+.+.+++. +..+
T Consensus 260 As~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~------~~ll~~L~~ll~s~rd~~~ 333 (2102)
T PLN03200 260 SSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM------SALILYLGELSESPRSPAP 333 (2102)
T ss_pred hcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc------hhhHHHHHHhhcccchHHH
Confidence 7654332 12234566666665443 446889999999988543 45788887777665 3333
Q ss_pred HHHHHHHHHHHhcccChhh-----h-hhchHHHHHHhcCCCchH-HHHHHHHHHHHHHHHh--CCCCcccchHHHHHHhc
Q 007863 219 RLLAVEGCGALGKLLEPQD-----C-VAHILPVIVNFSQDKSWR-VRYMVANQLYELCEAV--GPEPTRSDVVPAYVRLL 289 (587)
Q Consensus 219 r~~a~~~l~~l~~~~~~~~-----~-~~~l~~~l~~~~~d~~~~-vR~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l 289 (587)
...++.++..+...+.... + ...+.+.+.+++.++++. +...+..+|..+..+. .......+..+.++.++
T Consensus 334 ~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL 413 (2102)
T PLN03200 334 IADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLI 413 (2102)
T ss_pred HHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhh
Confidence 3445555655544333211 1 124568899999988665 4777777764432111 00111346788899999
Q ss_pred CCChHHHHHHHHHhHHHHHHhhCHH---HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH---HHHHhHHHHH
Q 007863 290 RDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIF 363 (587)
Q Consensus 290 ~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l 363 (587)
...+.+++..++.+|..++..-... ......+|.+.+++.+.+..+|..++..++.++..-... ......+|.+
T Consensus 414 ~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~L 493 (2102)
T PLN03200 414 TMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPL 493 (2102)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 9888999999999999998642111 223447899999999999999999999999987533211 1234578999
Q ss_pred HHhcCCCChHHHHHHHHHhHHhhhhhch-h-hH-hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHH
Q 007863 364 LSLLKDEFPDVRLNIISKLDQVNQVIGI-D-LL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 440 (587)
Q Consensus 364 ~~~l~d~~~~vr~~a~~~l~~i~~~~~~-~-~~-~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 440 (587)
.++|..++..+|..|++++++++..-.. . .+ ....+|.+.+++++.+++++..++..+..+......+ .++.
T Consensus 494 V~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-----~I~~ 568 (2102)
T PLN03200 494 VQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-----TISQ 568 (2102)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-----HHHH
Confidence 9999999999999999999999864211 1 12 2367899999999999999999999999887643332 2344
Q ss_pred HHHHcCCCchHHHHHHHHHHHHHHHHhChhhh------hhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh---HHH
Q 007863 441 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA------MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EIT 511 (587)
Q Consensus 441 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~------~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~~~ 511 (587)
+..++...+..++..++..++.+......+.+ ....+|.+.+++.+++..++..|++++.+++..-.. ...
T Consensus 569 Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv 648 (2102)
T PLN03200 569 LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLA 648 (2102)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 55677788889999999999998764443321 245789999999999999999999999999873322 234
Q ss_pred HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH----HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863 512 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 512 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~ 582 (587)
....+|.++.++.+.+..+|..++.+|+.+....... .....++|.|.+++++.+.+++..|..||+.+.+
T Consensus 649 ~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~ 723 (2102)
T PLN03200 649 TDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS 723 (2102)
T ss_pred HcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc
Confidence 5678899999999999999999999999998644332 2335678899999999999999999999998875
No 14
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.92 E-value=3.7e-20 Score=176.15 Aligned_cols=529 Identities=16% Similarity=0.163 Sum_probs=273.5
Q ss_pred hcCccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccccc-C-CchHHHHHHHHHhcccccCcCC--cchHhhhhhHHHh
Q 007863 18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-D-DDDEVLLAMAEELGVFIPYVGG--LEYANVLLPPLET 93 (587)
Q Consensus 18 l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~-~~~~v~~~~~~~l~~~~~~~~~--~~~~~~l~~~l~~ 93 (587)
+.+.|+-+|....++++.++.++|. +.|+|||+..- + .+.+.|+.-.++...++.+.|- -.|...++.++..
T Consensus 485 idn~deYVRnttarafavvasalgi----p~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~ 560 (1172)
T KOG0213|consen 485 IDNKDEYVRNTTARAFAVVASALGI----PALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEH 560 (1172)
T ss_pred cccccHHHHHHHHHHHHHHHHHhCc----HHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 4467899999999999999999886 57889887632 2 2445554444444444433332 1355667888889
Q ss_pred hhcCchhHHHHHHHHHHHHHHhhcCh---hhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH----HHHHHHH
Q 007863 94 LCTVEETCVRDKAVESLCRIGSQMRE---QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA----LKTELRT 166 (587)
Q Consensus 94 l~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~----~~~~l~~ 166 (587)
.+.|+...||-.++.++..+++..+| +.+...+-|+-.....+- -....+-...++.+++...++ +-.+++-
T Consensus 561 gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hr-gk~laafLkAigyliplmd~eya~yyTrevml 639 (1172)
T KOG0213|consen 561 GLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHR-GKELAAFLKAIGYLIPLMDAEYASYYTREVML 639 (1172)
T ss_pred hhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc-ChHHHHHHHHHhhccccccHHHHHHhHHHHHH
Confidence 99999999999999999999988665 334444444433332221 111122223444444444333 1123333
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh--hhH---------------------------------------HHHHH
Q 007863 167 IYRQLCQDDMPMVRRSAATNLGKFAATVEAA--HLK---------------------------------------SEIMS 205 (587)
Q Consensus 167 ~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~--~~~---------------------------------------~~i~~ 205 (587)
++..-.++++.+.++..++.+...+..-+-+ ... ..++.
T Consensus 640 il~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~ 719 (1172)
T KOG0213|consen 640 ILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVS 719 (1172)
T ss_pred HHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHH
Confidence 3344445555555555555555544432210 000 11222
Q ss_pred HHHHhcccCchhHHHHHHHHHHHHhcccChh----hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC--CCccc
Q 007863 206 IFEELTQDDQDSVRLLAVEGCGALGKLLEPQ----DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRS 279 (587)
Q Consensus 206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~ 279 (587)
-...-+.|+.+..|+...+....+...++.. ...+.++.-++-.++..+.... ..+..++.+...++. ..+.+
T Consensus 720 R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylp 798 (1172)
T KOG0213|consen 720 RVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLP 798 (1172)
T ss_pred HHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchH
Confidence 2333456677888888888888887776641 1222333333333332222221 234455555555554 33334
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHHhh---CHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHH--
Q 007863 280 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL---NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA-- 354 (587)
Q Consensus 280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~-- 354 (587)
.++..+...++++.+.||..|+..++.++..+ +.+.....+-..+.+.+....+.|--..+.++..+....|-..
T Consensus 799 qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 45555555666666666666666666655433 2333333333334445555555555555555555554443111
Q ss_pred -HHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhh----chhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC
Q 007863 355 -TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429 (587)
Q Consensus 355 -~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~----~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~ 429 (587)
-...++|.+...|+.....|+..++..++.|+..- +..++..... -+.+++...+..+|.++...++.+++.+|
T Consensus 879 pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcf-eLlelLkahkK~iRRaa~nTfG~IakaIG 957 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICF-ELLELLKAHKKEIRRAAVNTFGYIAKAIG 957 (1172)
T ss_pred CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHhcC
Confidence 12345555555556656666666665555555321 2222221111 12233444555566666666666666665
Q ss_pred hhhHHH-------------------------------HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhch
Q 007863 430 VGFFDD-------------------------------KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHI 476 (587)
Q Consensus 430 ~~~~~~-------------------------------~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~ 476 (587)
+..+.. .++|.+++--.-+...|+...+++++.+.+..|.-. +...+
T Consensus 958 PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav 1037 (1172)
T KOG0213|consen 958 PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAV 1037 (1172)
T ss_pred HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHh
Confidence 532211 134444444444555555555555555555444321 23444
Q ss_pred HHHHHhhhcCCccHHHHHHHHHHHHhhc---ccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHh
Q 007863 477 VPQVLEMINNPHYLYRMTILQAISLLAP---VMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKS 553 (587)
Q Consensus 477 ~~~l~~~l~~~~~~~r~~a~~~l~~l~~---~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ 553 (587)
.|.+.+.+.|.+...|+.|..++.+++- ..|.+...-+++..+....-+++|.+-+....++..+...+++..+.++
T Consensus 1038 ~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y 1117 (1172)
T KOG0213|consen 1038 TPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKY 1117 (1172)
T ss_pred hHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 5555555555555555555555555543 2233344444555555445555555555555555555555554444333
No 15
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.4e-20 Score=176.29 Aligned_cols=465 Identities=16% Similarity=0.124 Sum_probs=348.6
Q ss_pred hhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCC-CCcchhhHHhhhhhhccCCCH--HHHHHH
Q 007863 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPE--ALKTEL 164 (587)
Q Consensus 88 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~-~~~~r~~a~~l~~~~~~~~~~--~~~~~l 164 (587)
++++.....|+.+.+|..-.++...+....+.+... .+.|...+..++. +...|.....+.+....+... .....+
T Consensus 19 ~~~~~~~g~d~~~~v~~~ml~a~~~~~~~~~~~~v~-~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~ 97 (569)
T KOG1242|consen 19 LLFLVSAGEDRRIDVRGNMLEAGEAAINQHGDQNVL-NLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISI 97 (569)
T ss_pred ceeecccCCCcchhhHHhHHHHHHHHHHhhhHHHHH-HHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHH
Confidence 334444447888899998888888888877765543 4667666655544 555666666666666655532 245567
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhh-hhhchH
Q 007863 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD-CVAHIL 243 (587)
Q Consensus 165 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~ 243 (587)
+..+..-+.-+++.+|++...++..+...... .....+.+.+.++++.....-|..+...+..+....+-+. ....++
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l 176 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKG-LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFL 176 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhc-cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHH
Confidence 77788888889999999999999998776644 3445677777778887777788888888877766555432 234577
Q ss_pred HHHHHhcCCCchHH-HHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhH
Q 007863 244 PVIVNFSQDKSWRV-RYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHI 320 (587)
Q Consensus 244 ~~l~~~~~d~~~~v-R~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 320 (587)
..+.+...|+.... |+.+..++......+|+.. +.-.++|.+...+.|....||.+|..+...+...+....+ +.+
T Consensus 177 ~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV-K~l 255 (569)
T KOG1242|consen 177 DNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV-KLL 255 (569)
T ss_pred HHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh-hHh
Confidence 78888888875544 4457777777777777532 2234667777777899999999999999999998877654 455
Q ss_pred HHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch--HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhh
Q 007863 321 LPCVKELSSDSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (587)
Q Consensus 321 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~ 398 (587)
+|.+..-+.+..|+.+.++++.++.++.+.+. +...+.++|.+...+.|..++||.++..++..++..+.+.++ +.+
T Consensus 256 lpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~~~ 334 (569)
T KOG1242|consen 256 LPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-QKI 334 (569)
T ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-HHH
Confidence 55555545555999999999999988877653 346788999999999999999999999999999999988775 679
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHH--HHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCh-hh---h
Q 007863 399 LPAIVELAEDRHWRVRLAIIEYIPL--LASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP-DW---A 472 (587)
Q Consensus 399 ~~~l~~~~~~~~~~vr~~~~~~l~~--l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~---~ 472 (587)
+|.+.+.+.|++..+.... ..++. ++..+.. ....-++|++.+.+.+.+...+..++..++.++..... .+ |
T Consensus 335 ip~Lld~l~dp~~~~~e~~-~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapf 412 (569)
T KOG1242|consen 335 IPTLLDALADPSCYTPECL-DSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPF 412 (569)
T ss_pred HHHHHHHhcCcccchHHHH-Hhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhh
Confidence 9999999999986654432 22211 1111111 22467899999999999999999999999999998733 22 5
Q ss_pred hhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCC-CccHHHHHHHHHHHHHhhhchHHHH
Q 007863 473 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDR-VPNIKFNVAKVLQSLIPIVDQSVVE 551 (587)
Q Consensus 473 ~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~ 551 (587)
...++|.+...+.|+.+.+|..+.++++.+.+..|...+ ....|.+...+++. ...-|..++..+..+...++.+.+.
T Consensus 413 l~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~ 491 (569)
T KOG1242|consen 413 LPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVE 491 (569)
T ss_pred HHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHH
Confidence 678888888889999999999999999999998887755 88889998888765 5667889999999998887766553
Q ss_pred HhHHHHHHH
Q 007863 552 KSIRPCLVE 560 (587)
Q Consensus 552 ~~i~~~l~~ 560 (587)
.++|.+..
T Consensus 492 -~~~~~~~a 499 (569)
T KOG1242|consen 492 -DILPEILA 499 (569)
T ss_pred -HHHHHHHH
Confidence 44554444
No 16
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.90 E-value=3.7e-20 Score=189.49 Aligned_cols=405 Identities=16% Similarity=0.181 Sum_probs=305.0
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHhcccCchhHHHHHHHHHHHHhcccChh
Q 007863 158 EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSE-IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 236 (587)
Q Consensus 158 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~-i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~ 236 (587)
++..+.+.+.+..++.|++|.||+.|+-++..+....++ ..+. +.+.+.+++.|+++.|+..|+.++..+ ...++
T Consensus 109 ~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~ 184 (526)
T PF01602_consen 109 PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDD 184 (526)
T ss_dssp HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHH
T ss_pred cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcc
Confidence 445566777778888899999999999999999887543 3222 788888899999999999999998888 22222
Q ss_pred ---hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcc--cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh
Q 007863 237 ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR--SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 311 (587)
Q Consensus 237 ---~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 311 (587)
...+.+...+.+.+.+.++..+..+++.+..++.... ... ..+++.+..++++.++.|+..|++++..+...
T Consensus 185 ~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~--~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~- 261 (526)
T PF01602_consen 185 SYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP--EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS- 261 (526)
T ss_dssp HHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-
T ss_pred hhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh--hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc-
Confidence 2344556666666688888899888888776543211 112 35788888888888899999999888866442
Q ss_pred CHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch
Q 007863 312 NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 391 (587)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~ 391 (587)
......+++.+.+++.++++.+|..+++.+..++....+. .......+..+..+++..+|..++..+..++..-.
T Consensus 262 --~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~--v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n- 336 (526)
T PF01602_consen 262 --PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPA--VFNQSLILFFLLYDDDPSIRKKALDLLYKLANESN- 336 (526)
T ss_dssp --HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHH--HGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH-
T ss_pred --hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchh--hhhhhhhhheecCCCChhHHHHHHHHHhhcccccc-
Confidence 2245778889999999999999999999999998665222 12322334444558889999999999988875432
Q ss_pred hhHhhhhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh
Q 007863 392 DLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 470 (587)
Q Consensus 392 ~~~~~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 470 (587)
...+++.+...+.+ .+..+|..++..++.++..+... .+.+++.+++++......+...++..+..+.......
T Consensus 337 ---~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~ 411 (526)
T PF01602_consen 337 ---VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL 411 (526)
T ss_dssp ---HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT
T ss_pred ---hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh
Confidence 24577777777744 47889999999999999887543 4667888899998888888999999999888764332
Q ss_pred hhhhchHHHHHhhhcC-CccHHHHHHHHHHHHhhcccCh-HHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH
Q 007863 471 WAMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGS-EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 471 ~~~~~~~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~-~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 548 (587)
...++..+.+.+.+ .+...+.++++.+|..+...+. + ....++..+.+...+.++.+|..++.++..+....+..
T Consensus 412 --~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~ 488 (526)
T PF01602_consen 412 --REKILKKLIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPEN 488 (526)
T ss_dssp --HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCST
T ss_pred --hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCch
Confidence 35567777777665 4567899999999999987765 3 45677888888888888999999999999999887655
Q ss_pred HHHHhHHHHHHHhcC--CCCccHHHHHHHHHHHHHH
Q 007863 549 VVEKSIRPCLVELSE--DPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 549 ~~~~~i~~~l~~l~~--d~~~~Vr~~a~~al~~l~~ 582 (587)
...+.+.+.+..+.. |.+++||.+|..-+.-+..
T Consensus 489 ~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~~ 524 (526)
T PF01602_consen 489 EVQNEILQFLLSLATEDSSDPEVRDRAREYLRLLNS 524 (526)
T ss_dssp THHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcc
Confidence 555688888888887 8899999999988776543
No 17
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.6e-19 Score=170.75 Aligned_cols=520 Identities=16% Similarity=0.146 Sum_probs=368.9
Q ss_pred cccccc-ccCCchHHHHHHHHHhcccccCcCCcchHhhhhhHHHhhhc-CchhHHHHHHHHHHHHHHhhcChhhHhhhhH
Q 007863 50 IPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMREQDVVEHFI 127 (587)
Q Consensus 50 ~p~l~~-~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll 127 (587)
++++.. -.|....|+..+.++....... .|.+....+.|...+.++ +.+..+|+......+.++.++...+- ...
T Consensus 19 ~~~~~~~g~d~~~~v~~~ml~a~~~~~~~-~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~--~~~ 95 (569)
T KOG1242|consen 19 LLFLVSAGEDRRIDVRGNMLEAGEAAINQ-HGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDP--RPI 95 (569)
T ss_pred ceeecccCCCcchhhHHhHHHHHHHHHHh-hhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCc--chh
Confidence 455443 2345567777776664333222 334556677777766544 56888999888888888887654332 223
Q ss_pred HHHHHhh---cCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhh-HHHH
Q 007863 128 PLVKRLA---AGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHL-KSEI 203 (587)
Q Consensus 128 ~~~~~l~---~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~-~~~i 203 (587)
+++..+. ......++.+....+..............+.+.+.+++......-|..+...+..+....+.+.. ...+
T Consensus 96 ~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~ 175 (569)
T KOG1242|consen 96 SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGF 175 (569)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhH
Confidence 3333332 22234444444444444433333445667788888888888888899999888888876655433 3446
Q ss_pred HHHHHHhcccCchhH-HHHHHHHHHHHhcccCh--hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccc
Q 007863 204 MSIFEELTQDDQDSV-RLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD 280 (587)
Q Consensus 204 ~~~l~~l~~d~~~~v-r~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ 280 (587)
+..+.+...|....- |..+..+.......+++ +.+.-.++|.+.....|....||.++..+...+...+..... +.
T Consensus 176 l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV-K~ 254 (569)
T KOG1242|consen 176 LDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV-KL 254 (569)
T ss_pred HHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh-hH
Confidence 777777888876544 44566666666666664 445556777788888899999999999999998887765443 34
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHh
Q 007863 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 358 (587)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 358 (587)
++|.+...+.+..|+-+.+++..++.++...+.. ...+.++|.+.+.+.|..+.||.++..++..++....... .+.
T Consensus 255 llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~ 333 (569)
T KOG1242|consen 255 LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQK 333 (569)
T ss_pred hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHH
Confidence 5555555555559999999999999888876654 4568899999999999999999999999999998887655 567
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHhHH--hhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC-hh---h
Q 007863 359 LLPIFLSLLKDEFPDVRLNIISKLDQ--VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-VG---F 432 (587)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~l~~--i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~-~~---~ 432 (587)
++|.+...+.|++..+... ...|+. +...+... -...++|.+.+-+.+++..++..++..++.++.... +. .
T Consensus 334 ~ip~Lld~l~dp~~~~~e~-~~~L~~ttFV~~V~~p-sLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lap 411 (569)
T KOG1242|consen 334 IIPTLLDALADPSCYTPEC-LDSLGATTFVAEVDAP-SLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAP 411 (569)
T ss_pred HHHHHHHHhcCcccchHHH-HHhhcceeeeeeecch-hHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhh
Confidence 8899999999987555432 222221 22222222 236789999999999999999999999999998873 22 3
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCC-ccHHHHHHHHHHHHhhcccChHHH
Q 007863 433 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGSEIT 511 (587)
Q Consensus 433 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~~~~ 511 (587)
|.+.++|-+...+.|..+++|..+..+|+.+.+..|...+ +..+|.+.+...+. ...-|..++..+..+....+.+ .
T Consensus 412 fl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~-~ 489 (569)
T KOG1242|consen 412 FLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVE-K 489 (569)
T ss_pred hHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccch-H
Confidence 4567888888889999999999999999999999998866 88999999887665 4567889999999998888876 4
Q ss_pred HHhHHHHHHhhcCC--CCccHHHHHHHHHHHHHhhhch--HHHHHhHHHHHHHhcCCCCccHHHHHHHHHH
Q 007863 512 CSQLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQ--SVVEKSIRPCLVELSEDPDVDVRFFATQALQ 578 (587)
Q Consensus 512 ~~~~l~~l~~~l~d--~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~ 578 (587)
...++|.+...... ..+.+|...+..+..+-...+. ..+...+++.+.+-+.|.++.+|..+.++=.
T Consensus 490 ~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~~~ 560 (569)
T KOG1242|consen 490 VEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEAGE 560 (569)
T ss_pred HHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhhhh
Confidence 56666666655443 3455887777766655333332 3566677888888777999999988877643
No 18
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.89 E-value=5e-19 Score=165.23 Aligned_cols=553 Identities=16% Similarity=0.165 Sum_probs=362.7
Q ss_pred hcCccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccc-ccCCchHHHHHHHHHhcccccCcCCcchHhhhhhHHHhhhc
Q 007863 18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCT 96 (587)
Q Consensus 18 l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~ 96 (587)
+.+.|...|...-+.+..++...|-.. .+..+.- ....++-||...+++.+.++..+| .+.++|+|..++.
T Consensus 255 lided~~~r~~g~eii~nL~~~~Gl~~----~vs~mrpDi~~~deYVRnvt~ra~~vva~alg----v~~llpfl~a~c~ 326 (975)
T COG5181 255 LIDEDLKRRCMGREIILNLVYRCGLGF----SVSSMRPDITSKDEYVRNVTGRAVGVVADALG----VEELLPFLEALCG 326 (975)
T ss_pred ccCccHHHhcccHHHHHHHHHHhccce----eeeeccCCcccccHHHHHHHHHHHHHHHHhhC----cHHHHHHHHHHhc
Confidence 345666666666444555554444321 1222221 223455678777888877777666 4567888888877
Q ss_pred Cc-hhHHHHHHHHHHHHHHhhcChhhH--hhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCH---HHHHHHHHHHHH
Q 007863 97 VE-ETCVRDKAVESLCRIGSQMREQDV--VEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE---ALKTELRTIYRQ 170 (587)
Q Consensus 97 ~~-~~~vr~~a~~~l~~l~~~~~~~~~--~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~---~~~~~l~~~l~~ 170 (587)
+. .+.-|...++...+++.-+|.... ...++..+..+..|+...+|+.++..++.+++...+ +..+.++..+..
T Consensus 327 SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~ 406 (975)
T COG5181 327 SRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWE 406 (975)
T ss_pred CccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 65 778888888888888877665432 123444555666777777787777777777666554 244444444444
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhcccCchhHHHHHH-----------------------H
Q 007863 171 LCQDDMPMVRRSAATNLGKFAATVEAA---HLKSEIMSIFEELTQDDQDSVRLLAV-----------------------E 224 (587)
Q Consensus 171 l~~~~~~~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~-----------------------~ 224 (587)
..+..-..+-.+..++.|.++....++ .+......++...++++++..+.... +
T Consensus 407 g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pe 486 (975)
T COG5181 407 GASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPE 486 (975)
T ss_pred HHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHH
Confidence 433333333344444444443332211 11222333333333333222111111 1
Q ss_pred HHHHHhcc--cC----------------hhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC----------
Q 007863 225 GCGALGKL--LE----------------PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---------- 276 (587)
Q Consensus 225 ~l~~l~~~--~~----------------~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~---------- 276 (587)
.+..++.. .+ +..-.+.+...+.+..+|+....|..++.....+...+|...
T Consensus 487 fF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~ 566 (975)
T COG5181 487 FFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLY 566 (975)
T ss_pred hhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHH
Confidence 11111110 00 000123355566667778877788888777766655443210
Q ss_pred ----------------------------------cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh---CHHHHHHh
Q 007863 277 ----------------------------------TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL---NPELAIQH 319 (587)
Q Consensus 277 ----------------------------------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~ 319 (587)
....++..+..+++.+.+.||..|+...+.+...+ +......+
T Consensus 567 d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~k 646 (975)
T COG5181 567 DSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAK 646 (975)
T ss_pred HHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 11235666677889999999999999888776644 45544556
Q ss_pred HHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH---HHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhh----chh
Q 007863 320 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----GID 392 (587)
Q Consensus 320 ~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~----~~~ 392 (587)
+-..+.+.+....+.|--..+.++..+....+.. .-...++|.+...|+.....|....+..++.|+..- |..
T Consensus 647 lg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~r 726 (975)
T COG5181 647 LGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVR 726 (975)
T ss_pred HhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHH
Confidence 6666677788888999989888888887766432 224578888999999999999999999999888543 334
Q ss_pred hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhh
Q 007863 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 472 (587)
Q Consensus 393 ~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 472 (587)
++.... =-+.+.+.+.+..+|.++.+.++.+++.+|++ .++.++++.++......|....-+++..++.+|+
T Consensus 727 EWMRIc-feLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp--- 798 (975)
T COG5181 727 EWMRIC-FELVDSLKSWNKEIRRNATETFGCISRAIGPQ----DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP--- 798 (975)
T ss_pred HHHHHH-HHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc---
Confidence 443322 22345567788899999999999999999985 4566777777777777888888888888888775
Q ss_pred hhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH--HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhh---ch
Q 007863 473 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV---DQ 547 (587)
Q Consensus 473 ~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~---~~ 547 (587)
-.++|.++.-...|+..++...++++..+.+..|.. .+...+.|.+...++|.++..|+.+.+.+..+.-.. +.
T Consensus 799 -fsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~ 877 (975)
T COG5181 799 -FSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGD 877 (975)
T ss_pred -hhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCccc
Confidence 347899888888899999999999999998877753 467889999999999999999999999998886543 22
Q ss_pred HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhhcC
Q 007863 548 SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 587 (587)
Q Consensus 548 ~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~~~ 587 (587)
+...-+++..|..=.-++.|.|.....+++..++..+|++
T Consensus 878 eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g 917 (975)
T COG5181 878 EDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSG 917 (975)
T ss_pred HHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccH
Confidence 3333445555555567899999999999999999999874
No 19
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.88 E-value=6.4e-18 Score=165.33 Aligned_cols=501 Identities=16% Similarity=0.155 Sum_probs=336.6
Q ss_pred HhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccC-------C
Q 007863 84 ANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPS-------A 156 (587)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~-------~ 156 (587)
.......+.+++.|.+..|+..|+++++-++...+.+++...+-.+..++...........++++...+.+. .
T Consensus 45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~l 124 (1233)
T KOG1824|consen 45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFL 124 (1233)
T ss_pred hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccccc
Confidence 345566777888999999999999999999999988776665444444444444333444555544443222 2
Q ss_pred CHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcc
Q 007863 157 PEALKTELRTIYRQLCQ--DDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL 232 (587)
Q Consensus 157 ~~~~~~~l~~~l~~l~~--~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 232 (587)
...+.+.+.|.+..... .+...++-.++..++.+...++. +++...++..+.--+......||+-|+.+++.++..
T Consensus 125 a~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~ 204 (1233)
T KOG1824|consen 125 AATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASS 204 (1233)
T ss_pred ccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHh
Confidence 23466777777766543 34455888888888888887775 457777777777778888889999999999999998
Q ss_pred cChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhc---CCChHHHHHHHHHhHHHH
Q 007863 233 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLL---RDNEAEVRIAAAGKVTKI 307 (587)
Q Consensus 233 ~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l---~d~~~~vr~~a~~~l~~l 307 (587)
.+.+.+..-+-..+..+.+..+...-+..+++|+.++...|... ....++|.+.+++ +..+.+.|+.++++++.+
T Consensus 205 ~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~f 284 (1233)
T KOG1824|consen 205 CNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESF 284 (1233)
T ss_pred cCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 88764444444444445555566666677899999999888643 3456889999888 777889999999999999
Q ss_pred HHhhCHH--HHHHhHHHHHhHhcC----------------------------------CCcHHHHHHHHHHHHhhhhhhc
Q 007863 308 CRILNPE--LAIQHILPCVKELSS----------------------------------DSSQHVRSALATVIMGMAPILG 351 (587)
Q Consensus 308 ~~~~~~~--~~~~~~~~~l~~~~~----------------------------------d~~~~vr~~a~~~l~~l~~~~~ 351 (587)
....+.+ .+.++++....+.+. |-+|.||++|++++..+...-.
T Consensus 285 l~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~ 364 (1233)
T KOG1824|consen 285 LRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRL 364 (1233)
T ss_pred HHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccH
Confidence 9987765 233444444332211 2359999999999987653221
Q ss_pred --hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch----------------h---------------------
Q 007863 352 --KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI----------------D--------------------- 392 (587)
Q Consensus 352 --~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~----------------~--------------------- 392 (587)
-..+.+.+-|.++.-+++.+++|+...+.++-.+....++ .
T Consensus 365 E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~ql 444 (1233)
T KOG1824|consen 365 EMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQL 444 (1233)
T ss_pred HHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHH
Confidence 1234456777888888888888887776665554432210 0
Q ss_pred ---------------------------hHhhhhHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhhChhhHHH---HHHHH
Q 007863 393 ---------------------------LLSQSLLPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGFFDD---KLGAL 440 (587)
Q Consensus 393 ---------------------------~~~~~~~~~l~~~~~~~~--~~vr~~~~~~l~~l~~~~~~~~~~~---~l~~~ 440 (587)
+....++|-+...+.|.+ ...+..++..+.......+++.|.+ .+.|.
T Consensus 445 r~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~ 524 (1233)
T KOG1824|consen 445 REKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPP 524 (1233)
T ss_pred hhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhH
Confidence 000112222222233321 2334444444444444445555543 46777
Q ss_pred HHHHcCCCchHHHHHHHHHHHHHHHHhCh---------hhhhhchHHHHHhh--hcCCccHHHHHHHHHHHHhhcccChH
Q 007863 441 CMQWLKDKVYSIRDAAANNVKRLAEEFGP---------DWAMQHIVPQVLEM--INNPHYLYRMTILQAISLLAPVMGSE 509 (587)
Q Consensus 441 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------~~~~~~~~~~l~~~--l~~~~~~~r~~a~~~l~~l~~~~~~~ 509 (587)
+.....|+.+.+-..|+...+.+++.+.+ ..+...++....+. .+|.+.+||+.|+.+++.+...+|..
T Consensus 525 v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~ 604 (1233)
T KOG1824|consen 525 VVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDF 604 (1233)
T ss_pred HHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhh
Confidence 88888999999999999999999886533 12334444444443 46778999999999999998877732
Q ss_pred --HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhh---hchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHh
Q 007863 510 --ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI---VDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 584 (587)
Q Consensus 510 --~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~---~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~ 584 (587)
...+..+|.+.+-++ +...|..|++++..++.. ++..+....++|.+...+.......|.....++..+.+..
T Consensus 605 l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~ 682 (1233)
T KOG1824|consen 605 LGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNY 682 (1233)
T ss_pred hhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 135666777766665 578899999999988754 3334666778888877766656667777777777777766
Q ss_pred hc
Q 007863 585 MS 586 (587)
Q Consensus 585 ~~ 586 (587)
+.
T Consensus 683 ~~ 684 (1233)
T KOG1824|consen 683 SD 684 (1233)
T ss_pred hc
Confidence 54
No 20
>PRK09687 putative lyase; Provisional
Probab=99.87 E-value=3.9e-20 Score=167.58 Aligned_cols=254 Identities=19% Similarity=0.171 Sum_probs=193.7
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHH
Q 007863 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360 (587)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 360 (587)
-.+.+..++.|++..||..++.+|+.+.. +.+++.+..+++|++..+|..++.+|+.+...-. .....+
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~---~~~~a~ 92 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR---CQDNVF 92 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc---chHHHH
Confidence 35666777788888888888888887753 4456777777888888888888888888763211 123455
Q ss_pred HHHHHh-cCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHH
Q 007863 361 PIFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 439 (587)
Q Consensus 361 ~~l~~~-l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 439 (587)
|.+..+ ++|+++.||..++.+|+.+..... ......++.+...+.|++|.||..++..++.+.. +..++
T Consensus 93 ~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ai~ 162 (280)
T PRK09687 93 NILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------EAAIP 162 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--------HHHHH
Confidence 666655 788888999999998888753211 1123456666677788899999999988865432 34678
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHH
Q 007863 440 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV 519 (587)
Q Consensus 440 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l 519 (587)
.+...+.|+++.||..|+.+||.+. .+ .+...+.+...+.|+++.||..|+.+++.+.. ...+|.+
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~L 228 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSVL 228 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHHH
Confidence 8888999999999999999999872 11 24578888888999999999999999988754 4688889
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcC-CCCccHHHHHHHHHHH
Q 007863 520 INASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSE-DPDVDVRFFATQALQS 579 (587)
Q Consensus 520 ~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~-d~~~~Vr~~a~~al~~ 579 (587)
.+.+.+++ +|..++.+|+.+... ..+|.|.+++. ++|+.|+..|.+++.+
T Consensus 229 i~~L~~~~--~~~~a~~ALg~ig~~--------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 229 IKELKKGT--VGDLIIEAAGELGDK--------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHcCCc--hHHHHHHHHHhcCCH--------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 99888865 788899999988653 68899999875 8899999999998865
No 21
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.86 E-value=8e-20 Score=194.36 Aligned_cols=275 Identities=22% Similarity=0.255 Sum_probs=221.2
Q ss_pred hHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHH
Q 007863 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHIL 321 (587)
Q Consensus 242 l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 321 (587)
-++.+...+.|+++.||..|+..|+.+. ....++.+...++|+++.||..|+.+|..+...... .
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------A 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------h
Confidence 4567778889999999999999999864 345789999999999999999999999988654332 2
Q ss_pred HHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHH
Q 007863 322 PCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401 (587)
Q Consensus 322 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~ 401 (587)
+.+...++++++.||.+++.+|+.+... . .+.+...+.|+++.||..++.+|+.+.. .+.
T Consensus 687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~~--~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~ 746 (897)
T PRK13800 687 PALRDHLGSPDPVVRAAALDVLRALRAG--D-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VES 746 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhccC--C-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHH
Confidence 4455667889999999999999887421 1 1346678999999999999999998632 133
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHH
Q 007863 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVL 481 (587)
Q Consensus 402 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 481 (587)
+..++.|+++.||..+...|+.+...- ....+.+..+++|+++.||..|+.+|+.+.. . ..+.+.+.
T Consensus 747 l~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~----~---~~~~~~l~ 813 (897)
T PRK13800 747 VAGAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGC----P---PDDVAAAT 813 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----c---chhHHHHH
Confidence 556789999999999999998776421 1225677789999999999999999988742 1 23445677
Q ss_pred hhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHh
Q 007863 482 EMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL 561 (587)
Q Consensus 482 ~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l 561 (587)
..+.|++|.+|..|+.+|+.+.. +..++.+..+++|+++.||..|+.+|+.+.. .....+.|..+
T Consensus 814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~-------~~~a~~~L~~a 878 (897)
T PRK13800 814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWPG-------DPAARDALTTA 878 (897)
T ss_pred HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccCC-------CHHHHHHHHHH
Confidence 88999999999999999988753 3466889999999999999999999999721 13567888899
Q ss_pred cCCCCccHHHHHHHHHHH
Q 007863 562 SEDPDVDVRFFATQALQS 579 (587)
Q Consensus 562 ~~d~~~~Vr~~a~~al~~ 579 (587)
++|++++||..|.+||..
T Consensus 879 l~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 879 LTDSDADVRAYARRALAH 896 (897)
T ss_pred HhCCCHHHHHHHHHHHhh
Confidence 999999999999999864
No 22
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.85 E-value=1.5e-16 Score=147.77 Aligned_cols=545 Identities=11% Similarity=0.069 Sum_probs=368.0
Q ss_pred HHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccccc-CCch-HHHHHHHHHhcccccCcCCcc----hHhhhh
Q 007863 15 IDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDD-EVLLAMAEELGVFIPYVGGLE----YANVLL 88 (587)
Q Consensus 15 ~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~~~-~v~~~~~~~l~~~~~~~~~~~----~~~~l~ 88 (587)
+..|+|+.+.....|.+.+..++...-|...|+.++..+.... ++.+ .+.......+|..+.....+. +...++
T Consensus 100 l~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~ 179 (858)
T COG5215 100 LRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILF 179 (858)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHH
Confidence 4678899999999999999999988888888888887765533 4433 455566677777766433211 112222
Q ss_pred hHHHhhh-cCchhHHHHHHHHHHHHHHh----hcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhh----ccCCCHH
Q 007863 89 PPLETLC-TVEETCVRDKAVESLCRIGS----QMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVA----YPSAPEA 159 (587)
Q Consensus 89 ~~l~~l~-~~~~~~vr~~a~~~l~~l~~----~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~----~~~~~~~ 159 (587)
.+...-. ..++..+|.+|+.+|..-+. .+-.+.-+.++++.+.+....++..+..++.+.+..+ +.....-
T Consensus 180 aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~y 259 (858)
T COG5215 180 AIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSY 259 (858)
T ss_pred HHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2322222 35688999999999987332 2334455677888888877777666666665543332 3333333
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh-------------------hhHHHHHHHHHHhcc-------c
Q 007863 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA-------------------HLKSEIMSIFEELTQ-------D 213 (587)
Q Consensus 160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~-------------------~~~~~i~~~l~~l~~-------d 213 (587)
..+.+..+....+.+++..|...+++....+++.--+- .....++|.+..++. +
T Consensus 260 mE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~ 339 (858)
T COG5215 260 MENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYG 339 (858)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 45567777788899999999999999998887643210 012235666666553 2
Q ss_pred CchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcC
Q 007863 214 DQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLR 290 (587)
Q Consensus 214 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~ 290 (587)
+++++-++|..||.-+++..++. ....++.++.+-+..++|.-|.++..++|.+.+.-.. ....++.+|.+.....
T Consensus 340 DdWn~smaA~sCLqlfaq~~gd~-i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~ 418 (858)
T COG5215 340 DDWNPSMAASSCLQLFAQLKGDK-IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS 418 (858)
T ss_pred cccchhhhHHHHHHHHHHHhhhH-hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc
Confidence 46788999999999888877654 4455888889999999999999999999998753221 1123567888888889
Q ss_pred CChHHHHHHHHHhHHHHHHhhC----HHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHH---------HHH
Q 007863 291 DNEAEVRIAAAGKVTKICRILN----PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA---------TIE 357 (587)
Q Consensus 291 d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---------~~~ 357 (587)
|+.-.|+..++.+++.++.++. +..+....+......+.| ++.+-...++.+..+..++.+.. +..
T Consensus 419 D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ 497 (858)
T COG5215 419 DSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYL 497 (858)
T ss_pred cceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHH
Confidence 9999999999999999988653 332222222222222333 34455555556666665554321 222
Q ss_pred hHHHHHHHh--cCCCChHHHHHHHHHhHHhhhhhchh------hHhhhhHHHHHHHh---------cCC--CcHHHHHHH
Q 007863 358 QLLPIFLSL--LKDEFPDVRLNIISKLDQVNQVIGID------LLSQSLLPAIVELA---------EDR--HWRVRLAII 418 (587)
Q Consensus 358 ~l~~~l~~~--l~d~~~~vr~~a~~~l~~i~~~~~~~------~~~~~~~~~l~~~~---------~~~--~~~vr~~~~ 418 (587)
.++..+.+. +.+.+...|..+.++|+.++...... .+...+...+.+.+ +|. ..++....+
T Consensus 498 ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~ 577 (858)
T COG5215 498 AILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYI 577 (858)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 333334332 23667889999999999887544321 01122222222211 111 245667777
Q ss_pred HHHHHHHHhhCh--hhHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCccHHHH
Q 007863 419 EYIPLLASQLGV--GFFDDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRM 493 (587)
Q Consensus 419 ~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~~~~r~ 493 (587)
..+..+.+..++ +...+.++.++++.++..++ .+-.....+++.+...++..| +.+.++|.+.+.++..++.+-.
T Consensus 578 ~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~ 657 (858)
T COG5215 578 GVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLN 657 (858)
T ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHH
Confidence 788888887776 56678899999999987743 455666777788877776654 5689999999999888899999
Q ss_pred HHHHHHHHhhcccChHH--HHHhHHHHHHhhcCCC--CccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHh
Q 007863 494 TILQAISLLAPVMGSEI--TCSQLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVEL 561 (587)
Q Consensus 494 ~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l 561 (587)
.++..++.++..++.+. +...++..+..+++++ ..+++-..+..++-|...++.+ .+.+.++-.+.+.
T Consensus 658 ~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqa 731 (858)
T COG5215 658 SAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQA 731 (858)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999999999888763 5677888999999886 5678889999999998887764 4555555555553
No 23
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.85 E-value=9.6e-18 Score=171.74 Aligned_cols=462 Identities=15% Similarity=0.144 Sum_probs=332.1
Q ss_pred hhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHH
Q 007863 99 ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPM 178 (587)
Q Consensus 99 ~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 178 (587)
+...+..++.-+-.+.. .|. .+ ....+-+.++..++++..+..+.-.+..+.... ++..-...+.+.+-+.++++.
T Consensus 19 ~~~~~~~~l~kli~~~~-~G~-~~-~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~~~~~l~~n~l~kdl~~~n~~ 94 (526)
T PF01602_consen 19 DISKKKEALKKLIYLMM-LGY-DI-SFLFMEVIKLISSKDLELKRLGYLYLSLYLHED-PELLILIINSLQKDLNSPNPY 94 (526)
T ss_dssp HHHHHHHHHHHHHHHHH-TT-----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHHHCSSSHH
T ss_pred CHHHHHHHHHHHHHHHH-cCC-CC-chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHhhcCCCHH
Confidence 55555555444443221 222 22 245556666666777777777666655554433 455666778888888999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHH
Q 007863 179 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVR 258 (587)
Q Consensus 179 vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR 258 (587)
+|..|..+++.+.. +...+.+.+.+.+++.|+++.||+.|+.++.++....+...... +.+.+.+++.|+++.|+
T Consensus 95 ~~~lAL~~l~~i~~----~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~ 169 (526)
T PF01602_consen 95 IRGLALRTLSNIRT----PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVV 169 (526)
T ss_dssp HHHHHHHHHHHH-S----HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHH
T ss_pred HHHHHHhhhhhhcc----cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhH
Confidence 99999999999873 46778899999999999999999999999999988754421122 79999999999999999
Q ss_pred HHHHHHHHHHHHHhCCC---CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHH
Q 007863 259 YMVANQLYELCEAVGPE---PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHV 335 (587)
Q Consensus 259 ~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~v 335 (587)
.+|+..+..+ . ..+. .....+...+.+.+.+.++..+..+++.+..++..-........+++.+..++++.++.|
T Consensus 170 ~~a~~~l~~i-~-~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V 247 (526)
T PF01602_consen 170 SAALSLLSEI-K-CNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSV 247 (526)
T ss_dssp HHHHHHHHHH-H-CTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-c-cCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHH
Confidence 9999999988 1 1111 112234455555558888889988888888775532222111457888888888889999
Q ss_pred HHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHH
Q 007863 336 RSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 415 (587)
Q Consensus 336 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~ 415 (587)
...++.++..+... ......+.+.+..++.++++++|..++.++..++..... .+ ......+..+..+++..+|.
T Consensus 248 ~~e~~~~i~~l~~~---~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~-~v-~~~~~~~~~l~~~~d~~Ir~ 322 (526)
T PF01602_consen 248 VYEAIRLIIKLSPS---PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPP-AV-FNQSLILFFLLYDDDPSIRK 322 (526)
T ss_dssp HHHHHHHHHHHSSS---HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHH-HH-GTHHHHHHHHHCSSSHHHHH
T ss_pred HHHHHHHHHHhhcc---hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccch-hh-hhhhhhhheecCCCChhHHH
Confidence 99999988876643 235677889999999999999999999999999876522 22 12223333444588999999
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHH
Q 007863 416 AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMT 494 (587)
Q Consensus 416 ~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~ 494 (587)
.+++.+..++..-+. ..+++.+...+.+. +.++|..++..++.++..+... .+..++.+.+++...+..+...
T Consensus 323 ~~l~lL~~l~~~~n~----~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~~~~~~~~~~ 396 (526)
T PF01602_consen 323 KALDLLYKLANESNV----KEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLEISGDYVSNE 396 (526)
T ss_dssp HHHHHHHHH--HHHH----HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHHCTGGGCHCH
T ss_pred HHHHHHhhcccccch----hhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhhhccccccch
Confidence 999999888864332 34666777777444 7789999999999999988654 4667888888888777777888
Q ss_pred HHHHHHHhhcccChHHHHHhHHHHHHhhcCC-CCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHH
Q 007863 495 ILQAISLLAPVMGSEITCSQLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFA 573 (587)
Q Consensus 495 a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a 573 (587)
++..+..+....+.. ...++..+.+.+.+ ..+.++..+++.+|+.+...+.......++..+.+...+.+..||..+
T Consensus 397 ~~~~i~~ll~~~~~~--~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~i 474 (526)
T PF01602_consen 397 IINVIRDLLSNNPEL--REKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQI 474 (526)
T ss_dssp HHHHHHHHHHHSTTT--HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHhhcChhh--hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHH
Confidence 888888887654332 35567777777665 578899999999999988876511445677777777777888999999
Q ss_pred HHHHHHHHHHh
Q 007863 574 TQALQSKDQVM 584 (587)
Q Consensus 574 ~~al~~l~~~~ 584 (587)
..++.++....
T Consensus 475 lt~~~Kl~~~~ 485 (526)
T PF01602_consen 475 LTALAKLFKRN 485 (526)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHhhC
Confidence 99998887653
No 24
>PRK09687 putative lyase; Provisional
Probab=99.84 E-value=3.2e-19 Score=161.71 Aligned_cols=257 Identities=15% Similarity=0.075 Sum_probs=197.3
Q ss_pred hhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHH
Q 007863 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQ 318 (587)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 318 (587)
...-.+.+...+.|.+..||..++..|+.+. ....++.+..+++|+++.+|..++.+|+.++..-.. ..
T Consensus 21 ~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~--------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~ 89 (280)
T PRK09687 21 KKLNDDELFRLLDDHNSLKRISSIRVLQLRG--------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QD 89 (280)
T ss_pred hhccHHHHHHHHhCCCHHHHHHHHHHHHhcC--------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hH
Confidence 3444566677778999999999999888654 346778888888999999999999999998642111 13
Q ss_pred hHHHHHhHh-cCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhh
Q 007863 319 HILPCVKEL-SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 397 (587)
Q Consensus 319 ~~~~~l~~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~ 397 (587)
..++.+..+ .+|+++.||..++.+++.++.... .....+++.+...+.|+++.||..++.+|+.+.. +.
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ 159 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------EA 159 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--------HH
Confidence 466777765 688999999999999988853221 1123455667777888899999999999987642 45
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchH
Q 007863 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIV 477 (587)
Q Consensus 398 ~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 477 (587)
.++.+..+++|++|.||..++..++.+.. + .+...+.+...+.|+++.||..|+.+|+.+. ....+
T Consensus 160 ai~~L~~~L~d~~~~VR~~A~~aLg~~~~--~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~--------~~~av 225 (280)
T PRK09687 160 AIPLLINLLKDPNGDVRNWAAFALNSNKY--D----NPDIREAFVAMLQDKNEEIRIEAIIGLALRK--------DKRVL 225 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCC--C----CHHHHHHHHHHhcCCChHHHHHHHHHHHccC--------ChhHH
Confidence 78888888999999999999999887721 1 2356777888889999999999999998853 24578
Q ss_pred HHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcC-CCCccHHHHHHHHHHH
Q 007863 478 PQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK-DRVPNIKFNVAKVLQS 540 (587)
Q Consensus 478 ~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~-d~~~~vR~~a~~~l~~ 540 (587)
|.+.+.+.+++ +|..++.+++.++. +..+|.+..+++ +++..||..+.+++.+
T Consensus 226 ~~Li~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 226 SVLIKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 88888888876 57778888888875 468888888886 7899999999888764
No 25
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.84 E-value=8.7e-19 Score=186.53 Aligned_cols=274 Identities=20% Similarity=0.194 Sum_probs=203.8
Q ss_pred HHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHH
Q 007863 204 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVP 283 (587)
Q Consensus 204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~ 283 (587)
++.|...++|+++.||..|+..|+.+.. +..++.|...+.|+++.||..|+..|+.+....+ -.+
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-------~~~ 687 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-------PAP 687 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-------chH
Confidence 4455567788899999999988887642 4467777788889999999999998887754321 135
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHH
Q 007863 284 AYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF 363 (587)
Q Consensus 284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l 363 (587)
.+...++++++.||..++..|+.+.. +. ...+...+.|+++.||..++.+|+.+.. .+.+
T Consensus 688 ~L~~~L~~~d~~VR~~A~~aL~~~~~--~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~l 747 (897)
T PRK13800 688 ALRDHLGSPDPVVRAAALDVLRALRA--GD-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VESV 747 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhcc--CC-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHHH
Confidence 66677788888999999988887642 11 1234567789999999999998887631 1345
Q ss_pred HHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHH
Q 007863 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ 443 (587)
Q Consensus 364 ~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ 443 (587)
..++.|+++.||..++.+|+.+...- ...++.+..+++|+++.+|..++..|+.+... +.+.+.+..
T Consensus 748 ~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~~ 814 (897)
T PRK13800 748 AGAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAATA 814 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHHH
Confidence 67788999999999999988876431 12367777888899999999998888766431 223345677
Q ss_pred HcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhc
Q 007863 444 WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINAS 523 (587)
Q Consensus 444 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l 523 (587)
.+.|++|.||..|+.+|+.+. .+..++.+..++.|+++.||..++.+|+.+. +. +...+.+...+
T Consensus 815 aL~d~d~~VR~~Aa~aL~~l~--------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~----~~a~~~L~~al 879 (897)
T PRK13800 815 ALRASAWQVRQGAARALAGAA--------ADVAVPALVEALTDPHLDVRKAAVLALTRWP---GD----PAARDALTTAL 879 (897)
T ss_pred HhcCCChHHHHHHHHHHHhcc--------ccchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC----HHHHHHHHHHH
Confidence 788899999999999988753 1345678888889999999999999999872 11 23566777888
Q ss_pred CCCCccHHHHHHHHHHH
Q 007863 524 KDRVPNIKFNVAKVLQS 540 (587)
Q Consensus 524 ~d~~~~vR~~a~~~l~~ 540 (587)
+|+++.||..|.++|..
T Consensus 880 ~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 880 TDSDADVRAYARRALAH 896 (897)
T ss_pred hCCCHHHHHHHHHHHhh
Confidence 89999999999988863
No 26
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.84 E-value=7.8e-16 Score=143.03 Aligned_cols=527 Identities=13% Similarity=0.089 Sum_probs=349.4
Q ss_pred CCchHHHHHHHHHhcccccCcCCcchHhhhhhHHHhhhcCc-hhHHHHHHHHHHHHHHhhcChhhHhhh----hHHHHHH
Q 007863 58 DDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVE-ETCVRDKAVESLCRIGSQMREQDVVEH----FIPLVKR 132 (587)
Q Consensus 58 ~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~----ll~~~~~ 132 (587)
...++.-..++..++.++.+--.....+.++..+..-..++ ...++..++..++..|+.-.|+.+... +..++..
T Consensus 105 s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~g 184 (858)
T COG5215 105 SPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMG 184 (858)
T ss_pred CCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHh
Confidence 44555555666666665543111233455666655544444 446778889999999999888655432 2233333
Q ss_pred hh-cCCCCcchhhHHhhhhh-h---ccC-CCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHH
Q 007863 133 LA-AGEWFTARVSSCGLFHV-A---YPS-APEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEI 203 (587)
Q Consensus 133 l~-~~~~~~~r~~a~~l~~~-~---~~~-~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i 203 (587)
.. +.....+|.++...+.. + -.+ ..+..++.+++......+.++.++..++..+|.++....-. ....+.+
T Consensus 185 a~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL 264 (858)
T COG5215 185 ALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENAL 264 (858)
T ss_pred hcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 23356678777764433 1 112 22457888999999999999999999999999998764332 2333445
Q ss_pred HHHHHHhcccCchhHHHHHHHHHHHHhcccCh-------------h------hhhhchHHHHHHhcC-------CCchHH
Q 007863 204 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-------------Q------DCVAHILPVIVNFSQ-------DKSWRV 257 (587)
Q Consensus 204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-------------~------~~~~~l~~~l~~~~~-------d~~~~v 257 (587)
..+.....+++++.|...+++.+..+++.--+ + .-...++|.+++++. +++|.+
T Consensus 265 ~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~ 344 (858)
T COG5215 265 AALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNP 344 (858)
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccch
Confidence 55666777888999999999999887653211 0 012346777776653 358999
Q ss_pred HHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhHHHHHhHhcCCCcHH
Q 007863 258 RYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQH 334 (587)
Q Consensus 258 R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~ 334 (587)
-.+|..||.-++...|+.... .++.++-+-+..++|.-|++++-++|.+...-... .+.+..+|.+.....|+.-.
T Consensus 345 smaA~sCLqlfaq~~gd~i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~ 423 (858)
T COG5215 345 SMAASSCLQLFAQLKGDKIMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLW 423 (858)
T ss_pred hhhHHHHHHHHHHHhhhHhHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceee
Confidence 999999999999887765433 37777788899999999999999999998743332 45677889999999999999
Q ss_pred HHHHHHHHHHhhhhhhch----HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhh------Hh---hhhHHH
Q 007863 335 VRSALATVIMGMAPILGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL------LS---QSLLPA 401 (587)
Q Consensus 335 vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~------~~---~~~~~~ 401 (587)
|+..++++++.++.++.. .....-.+......+.| .|.+.....+....+..++.+-. +. ..++..
T Consensus 424 vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~ 502 (858)
T COG5215 424 VKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNA 502 (858)
T ss_pred hhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHH
Confidence 999999999999877642 22222222223333455 36676777777777766654321 11 122222
Q ss_pred HHHH--hcCCCcHHHHHHHHHHHHHHHhhChhh------HHHHHHHHHHHHc---------CC--CchHHHHHHHHHHHH
Q 007863 402 IVEL--AEDRHWRVRLAIIEYIPLLASQLGVGF------FDDKLGALCMQWL---------KD--KVYSIRDAAANNVKR 462 (587)
Q Consensus 402 l~~~--~~~~~~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l---------~d--~~~~vr~~a~~~l~~ 462 (587)
+... ..+.+...|..+.+.++.+....+... +.+....-+.+.+ +| ...++...-+..|..
T Consensus 503 Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~a 582 (858)
T COG5215 503 LVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEA 582 (858)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 2221 124566788899999998876554321 1122222221111 11 134666677777888
Q ss_pred HHHHhChh--hhhhchHHHHHhhhcCCc-cHHHHHHHHHHHHhhcccCh--HHHHHhHHHHHHhhcCCCCccHHHHHHHH
Q 007863 463 LAEEFGPD--WAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGS--EITCSQLLPVVINASKDRVPNIKFNVAKV 537 (587)
Q Consensus 463 l~~~~~~~--~~~~~~~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~l~d~~~~vR~~a~~~ 537 (587)
+++..+.+ ...+.++..+++.+...+ ..+-.-...+|++++..+++ +.+.+.+.|.+.+.++..+..|-..++..
T Consensus 583 iir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avgl 662 (858)
T COG5215 583 IIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGL 662 (858)
T ss_pred HHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHH
Confidence 88877774 244667777777766553 23344455677777776654 45788999999999988889999999999
Q ss_pred HHHHHhhhchH--HHHHhHHHHHHHhcCCC--CccHHHHHHHHHHHHHHHhhc
Q 007863 538 LQSLIPIVDQS--VVEKSIRPCLVELSEDP--DVDVRFFATQALQSKDQVMMS 586 (587)
Q Consensus 538 l~~l~~~~~~~--~~~~~i~~~l~~l~~d~--~~~Vr~~a~~al~~l~~~~~~ 586 (587)
++.+...++.+ .+...++..|.++++.+ +++++-....+++.++.-.|.
T Consensus 663 vgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga 715 (858)
T COG5215 663 VGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGA 715 (858)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhh
Confidence 99999888765 66677888888876554 567888888888888876663
No 27
>PTZ00429 beta-adaptin; Provisional
Probab=99.84 E-value=7.7e-16 Score=156.25 Aligned_cols=417 Identities=12% Similarity=0.105 Sum_probs=275.0
Q ss_pred CCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCc
Q 007863 136 GEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQ 215 (587)
Q Consensus 136 ~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~ 215 (587)
+.++.+|..|+..++.+ ..++..+.+.+.+.+.+.|++|.||+.|+-++.++....++......+.+.+.+++.|.+
T Consensus 116 d~Np~IRaLALRtLs~I---r~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~d 192 (746)
T PTZ00429 116 NSSPVVRALAVRTMMCI---RVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNN 192 (746)
T ss_pred CCCHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCC
Confidence 33444554444433322 124456677777888889999999999999999987765432223346677788889999
Q ss_pred hhHHHHHHHHHHHHhcccChh-hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC-CcccchHHHHHHhcCCCh
Q 007863 216 DSVRLLAVEGCGALGKLLEPQ-DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRSDVVPAYVRLLRDNE 293 (587)
Q Consensus 216 ~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~ 293 (587)
+.|...|+.+|..+....+.. ......+..+...+.+-+++.+...++.|.. ..+.+ .....++..+...++..+
T Consensus 193 p~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P~~~~e~~~il~~l~~~Lq~~N 269 (746)
T PTZ00429 193 PVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAA---QRPSDKESAETLLTRVLPRMSHQN 269 (746)
T ss_pred ccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999988887654321 0112223334444455556666666666533 22211 112357777778888888
Q ss_pred HHHHHHHHHhHHHHHHhhCHHHH---HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCC
Q 007863 294 AEVRIAAAGKVTKICRILNPELA---IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE 370 (587)
Q Consensus 294 ~~vr~~a~~~l~~l~~~~~~~~~---~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 370 (587)
+.|...|++++-.+.....++.. ...+.+.+..+ ..+++.+|..+++.+..+....+ ..+..+ +..+....+|+
T Consensus 270 ~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~-~~~Ff~~~~Dp 346 (746)
T PTZ00429 270 PAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTN-LDSFYVRYSDP 346 (746)
T ss_pred HHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHH-HHhhhcccCCc
Confidence 99999999998888765443321 12233445555 35667899999998877775432 222222 34444555676
Q ss_pred ChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCch
Q 007863 371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVY 450 (587)
Q Consensus 371 ~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~ 450 (587)
. .||...+..|..++..-. ...++..+.....+.+..++..+++.++.++..++. ..+.++..++.++.+...
T Consensus 347 ~-yIK~~KLeIL~~Lane~N----v~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~~cV~~Ll~ll~~~~~ 419 (746)
T PTZ00429 347 P-FVKLEKLRLLLKLVTPSV----APEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS--VAPDCANLLLQIVDRRPE 419 (746)
T ss_pred H-HHHHHHHHHHHHHcCccc----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCch
Confidence 4 588888888887764322 245677777778888999999999999999876543 357788888888876544
Q ss_pred HHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhh---cCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCC
Q 007863 451 SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI---NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRV 527 (587)
Q Consensus 451 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l---~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~ 527 (587)
+...++..+..+.+.+.... +++.+...+ .-.+...|.+.+|.+|.+++.+.. ...++..+.+-+.+.+
T Consensus 420 -~v~e~i~vik~IlrkyP~~~----il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~~i~~f~~E~ 491 (746)
T PTZ00429 420 -LLPQVVTAAKDIVRKYPELL----MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQRFIDTIMEHE 491 (746)
T ss_pred -hHHHHHHHHHHHHHHCccHH----HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHHHHhhhccCC
Confidence 44567888888887765432 445554322 113567899999999999876543 2455555556666778
Q ss_pred ccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcC-CCCccHHHHHHHHH
Q 007863 528 PNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSE-DPDVDVRFFATQAL 577 (587)
Q Consensus 528 ~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~-d~~~~Vr~~a~~al 577 (587)
+.||...+.+...+.-..+.+ ....+...|..+.+ |.++|||.+|..-.
T Consensus 492 ~~VqlqlLta~vKlfl~~p~~-~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~ 541 (746)
T PTZ00429 492 QRVQLAILSAAVKMFLRDPQG-MEPQLNRVLETVTTHSDDPDVRDRAFAYW 541 (746)
T ss_pred HHHHHHHHHHHHHHHhcCcHH-HHHHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 999999999999887765432 33445555555544 57889999998544
No 28
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=6.7e-16 Score=143.32 Aligned_cols=377 Identities=16% Similarity=0.197 Sum_probs=291.7
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHhcccCchhHHHHHHHHHHHHhcccCh--hhhhhch
Q 007863 169 RQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMS----IFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHI 242 (587)
Q Consensus 169 ~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~----~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l 242 (587)
...+.|.-++-|++++.-+.++++.+....-.+++-. ...++..+.+...|+.+...+...+-.++. ..+...+
T Consensus 6 ~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~i 85 (675)
T KOG0212|consen 6 ARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKI 85 (675)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHh
Confidence 3556788889999999999999887654333333333 455566667777788777777766555554 3367888
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----HH
Q 007863 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LA 316 (587)
Q Consensus 243 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~ 316 (587)
+|-+..+++|.+.+||..|++.+.++++....+. ..+.+...+.++..|++..||.+ +..+.++.+..-.+ ..
T Consensus 86 v~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte~~~tFs 164 (675)
T KOG0212|consen 86 VPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTESASTFS 164 (675)
T ss_pred hHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhccccccccC
Confidence 9999999999999999999999999998876543 34568888889999999988865 45666666644322 23
Q ss_pred HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHH--HHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhh-
Q 007863 317 IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL- 393 (587)
Q Consensus 317 ~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~- 393 (587)
.+.++|.+...+.+.++.+|.....++..+-..-+-+. +.+.+++.+.+++.|++++||..+-.+++++...+..+.
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~ 244 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPS 244 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcc
Confidence 57889999999999999999999999988765544332 557889999999999999999998888888876664331
Q ss_pred --HhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHHhC
Q 007863 394 --LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEFG 468 (587)
Q Consensus 394 --~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~ 468 (587)
-.+.+++.+..-+.++++.++..++.++..+....|.... .+.++..++.++.|... .++..+...-+.+.+.++
T Consensus 245 s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s 324 (675)
T KOG0212|consen 245 SMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVS 324 (675)
T ss_pred ccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHh
Confidence 1256778887788899999999999999999998877653 35667777778877766 577777766666665554
Q ss_pred hhhh-----hhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHH--HHHhHHHHHHhhcCCCCccHHHHHHHHHHHH
Q 007863 469 PDWA-----MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDRVPNIKFNVAKVLQSL 541 (587)
Q Consensus 469 ~~~~-----~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l 541 (587)
.+.. ...++..+.+.+.+.....|.+++.++..+....+.+. +...+.+.+++.+.|++..|-..++..+..+
T Consensus 325 ~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i 404 (675)
T KOG0212|consen 325 SERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASI 404 (675)
T ss_pred hhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHH
Confidence 4321 24688888888999999999999999999998877664 3577999999999999999999999999999
Q ss_pred Hhhhc
Q 007863 542 IPIVD 546 (587)
Q Consensus 542 ~~~~~ 546 (587)
+..-.
T Consensus 405 ~~s~~ 409 (675)
T KOG0212|consen 405 CSSSN 409 (675)
T ss_pred hcCcc
Confidence 87643
No 29
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.78 E-value=3.3e-17 Score=164.51 Aligned_cols=269 Identities=20% Similarity=0.225 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh------hhhhhchHHHHHHhc
Q 007863 177 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP------QDCVAHILPVIVNFS 250 (587)
Q Consensus 177 ~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~ 250 (587)
..-|..|++.|..+...+..+...+.++|++..++.|....||..|+.++..+...+.+ ..+.++++|.+..+.
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~ 516 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLL 516 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhh
Confidence 44566666666666666666666666666666666666666666666666665544332 234556666666666
Q ss_pred CC-CchHHHHHHHHHHHHHHHHhC------------------CC------Cc-------ccchHHHHHHhcCCChHHHHH
Q 007863 251 QD-KSWRVRYMVANQLYELCEAVG------------------PE------PT-------RSDVVPAYVRLLRDNEAEVRI 298 (587)
Q Consensus 251 ~d-~~~~vR~~a~~~l~~l~~~~~------------------~~------~~-------~~~l~~~l~~~l~d~~~~vr~ 298 (587)
.| ....||.+-+.+|+.++.... .. .. ...+-.....++.|+++.||.
T Consensus 517 ~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr 596 (1431)
T KOG1240|consen 517 NDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKR 596 (1431)
T ss_pred ccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 66 455666666666666654210 00 00 012445567788999999999
Q ss_pred HHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHH
Q 007863 299 AAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNI 378 (587)
Q Consensus 299 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a 378 (587)
+-++.|..++..+|++.-.+.+++.+..+++|.+|..|.+..+.+..++-.+|.....++++|++.+.+.|.++.|-..|
T Consensus 597 ~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~a 676 (1431)
T KOG1240|consen 597 ALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSA 676 (1431)
T ss_pred HHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHH
Confidence 99999999999999987778899999999999999999999999999988888887788999999999999999999999
Q ss_pred HHHhHHhhhhhch-hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHc
Q 007863 379 ISKLDQVNQVIGI-DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 445 (587)
Q Consensus 379 ~~~l~~i~~~~~~-~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 445 (587)
+.++..+++.--- +.....++.....++..+|-.+|.+++..|..+.+.++.....-.++|++-.++
T Consensus 677 L~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl 744 (1431)
T KOG1240|consen 677 LGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFL 744 (1431)
T ss_pred HHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhh
Confidence 9999998864211 111233445555567899999999999999999988876544333444444333
No 30
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=5.5e-15 Score=152.27 Aligned_cols=496 Identities=18% Similarity=0.202 Sum_probs=319.7
Q ss_pred HhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhh-H---hhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH
Q 007863 84 ANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQD-V---VEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA 159 (587)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~-~---~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~ 159 (587)
...+...+..++.++++..|++++-.|-.+.++++... . ...+...+..+..+++.-+.-.|..=++.+++-.+..
T Consensus 816 ~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~ 895 (1702)
T KOG0915|consen 816 ETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS 895 (1702)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence 35667788889999999999999999999999887321 1 1223333333333332111111221122222221111
Q ss_pred ---------------------------------------------HHHHHH------------HHHHHhcC-CCCHHHHH
Q 007863 160 ---------------------------------------------LKTELR------------TIYRQLCQ-DDMPMVRR 181 (587)
Q Consensus 160 ---------------------------------------------~~~~l~------------~~l~~l~~-~~~~~vR~ 181 (587)
..+++. --+.++.+ +..+.-|+
T Consensus 896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~ 975 (1702)
T KOG0915|consen 896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKK 975 (1702)
T ss_pred hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhccc
Confidence 122222 22333333 23577889
Q ss_pred HHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh--hhhhhchHHHHHHhcCCCchHH
Q 007863 182 SAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRV 257 (587)
Q Consensus 182 ~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~v 257 (587)
.|+-.++.++...++ +++...++|-+..+-.|++..|+.+-...+..+...-.. +.+.++|+.-++..+.+..|+|
T Consensus 976 GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRV 1055 (1702)
T KOG0915|consen 976 GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRV 1055 (1702)
T ss_pred chhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 999999999988765 578888999999999999999999888888877654332 5577788888888899999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcccc---hHHHHHHhcCCChHHHHHHHHHhHHHHHHhh---C-------HHHHHHhHHHHH
Q 007863 258 RYMVANQLYELCEAVGPEPTRSD---VVPAYVRLLRDNEAEVRIAAAGKVTKICRIL---N-------PELAIQHILPCV 324 (587)
Q Consensus 258 R~~a~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~-------~~~~~~~~~~~l 324 (587)
|.+++-++..+...-+.+...+. +...+.+..+|-...||++|-.+...+++.+ + .......++|.+
T Consensus 1056 ReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfL 1135 (1702)
T KOG0915|consen 1056 REASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFL 1135 (1702)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHH
Confidence 99999999998876444333333 3444445556777889998776666655533 1 124456678877
Q ss_pred hH-hcCCCcHHHHHHHHHHHHhhhhhhchH--HHHHhHHHHHHHhcCCCChHHHHHHHHHh-------------------
Q 007863 325 KE-LSSDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKL------------------- 382 (587)
Q Consensus 325 ~~-~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l------------------- 382 (587)
.. ..-+.-..||..++..+..+++..|.. .+...++|.+......-++.|-....--+
T Consensus 1136 l~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~akss 1215 (1702)
T KOG0915|consen 1136 LDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSS 1215 (1702)
T ss_pred hccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCC
Confidence 52 333666899999999999999888753 35677888888887776666543322111
Q ss_pred ------HHhhhhhchhhHhhhhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHcCCCchHHH
Q 007863 383 ------DQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIR 453 (587)
Q Consensus 383 ------~~i~~~~~~~~~~~~~~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr 453 (587)
......+. ....+.++|.+.+++... .-..|..+...+..+...+|.+ .+...++..++..++|.+..+|
T Consensus 1216 pmmeTi~~ci~~iD-~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~ 1294 (1702)
T KOG0915|consen 1216 PMMETINKCINYID-ISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVR 1294 (1702)
T ss_pred cHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHH
Confidence 11111111 234467888888888654 5667888888998888888754 3567889999999999999999
Q ss_pred HHHHHHHHHHHHHhChhhhhhchHHHHHh-hhcCCccHHHHHHHHHHHHhhcccCh--HHHHHhHHHHHHhhcCCCCccH
Q 007863 454 DAAANNVKRLAEEFGPDWAMQHIVPQVLE-MINNPHYLYRMTILQAISLLAPVMGS--EITCSQLLPVVINASKDRVPNI 530 (587)
Q Consensus 454 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~l~d~~~~v 530 (587)
.+-..+.|.+.+.-.++.+ ..++..+.. ++.+.+. .+..++..+.+|+.+... ..+...++|.++-..++...
T Consensus 1295 kafAsAmG~L~k~Ss~dq~-qKLie~~l~~~l~k~es-~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~K-- 1370 (1702)
T KOG0915|consen 1295 KAFASAMGYLAKFSSPDQM-QKLIETLLADLLGKDES-LKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEK-- 1370 (1702)
T ss_pred HHHHHHHHHHHhcCChHHH-HHHHHHHHHHHhccCCC-ccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHH--
Confidence 9999999999987766543 344444443 3333322 224555555555443322 12567788887765554411
Q ss_pred HHHHHHHHHHHHhhhch------H-HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863 531 KFNVAKVLQSLIPIVDQ------S-VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 586 (587)
Q Consensus 531 R~~a~~~l~~l~~~~~~------~-~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~~ 586 (587)
.-......+...+-+ . ...+.+.+.+.+..++..|.+|..+++++..++..+.+
T Consensus 1371 --a~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~ss 1431 (1702)
T KOG0915|consen 1371 --ANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSS 1431 (1702)
T ss_pred --HHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccc
Confidence 111111222222111 1 23345566677778888899999999999988876654
No 31
>PTZ00429 beta-adaptin; Provisional
Probab=99.77 E-value=6.4e-14 Score=142.46 Aligned_cols=461 Identities=12% Similarity=0.050 Sum_probs=300.2
Q ss_pred HhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHh
Q 007863 92 ETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQL 171 (587)
Q Consensus 92 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l 171 (587)
.+.+.+.+...|..+++.+-.... .|. +. ..+.+-+.+...+++...|...+--+....+. .++..-..++.+.+-
T Consensus 38 r~~L~s~~~~~kk~alKkvIa~mt-~G~-Dv-S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~-~pelalLaINtl~KD 113 (746)
T PTZ00429 38 QNDLNGTDSYRKKAAVKRIIANMT-MGR-DV-SYLFVDVVKLAPSTDLELKKLVYLYVLSTARL-QPEKALLAVNTFLQD 113 (746)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHH-CCC-Cc-hHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc-ChHHHHHHHHHHHHH
Confidence 333345555555555554443322 222 22 23455555566666777776655544444332 244445667888888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcC
Q 007863 172 CQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ 251 (587)
Q Consensus 172 ~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~ 251 (587)
+.|++|.+|..|+++++.+.. +.+.+.+.+.+.+.+.|.++.||+.|+-++.++....+.-.....+.+.+.+++.
T Consensus 114 l~d~Np~IRaLALRtLs~Ir~----~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~ 189 (746)
T PTZ00429 114 TTNSSPVVRALAVRTMMCIRV----SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLN 189 (746)
T ss_pred cCCCCHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhc
Confidence 999999999999999988643 4677888899999999999999999999999998765542223457788888999
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCCCc-ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCC
Q 007863 252 DKSWRVRYMVANQLYELCEAVGPEPT-RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSD 330 (587)
Q Consensus 252 d~~~~vR~~a~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d 330 (587)
|.++.|...|+..|..+....+.... ....+..+...+.+-++.-+...++.|..... ..+.....++..+...+++
T Consensus 190 D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P--~~~~e~~~il~~l~~~Lq~ 267 (746)
T PTZ00429 190 DNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRP--SDKESAETLLTRVLPRMSH 267 (746)
T ss_pred CCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHHhcC
Confidence 99999999999999998764332110 11223333444455455555555555533211 0112235677788888889
Q ss_pred CcHHHHHHHHHHHHhhhhhhchHHH---HHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhc
Q 007863 331 SSQHVRSALATVIMGMAPILGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 407 (587)
Q Consensus 331 ~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~ 407 (587)
.|..|.-++++++..+......+.. ...+.+.+..+ ...++++|..++..+..+.... +..+.. -+..+....+
T Consensus 268 ~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~-P~lf~~-~~~~Ff~~~~ 344 (746)
T PTZ00429 268 QNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIF-PNLLRT-NLDSFYVRYS 344 (746)
T ss_pred CCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC-HHHHHH-HHHhhhcccC
Confidence 9999999999999888765432221 12333445555 4567899999999998887643 222222 2333334446
Q ss_pred CCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCC
Q 007863 408 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 487 (587)
Q Consensus 408 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~ 487 (587)
|+.. +|...++.+..+++.-+. ..++.-+.....+.+.+++..++.++|.++..+... .+.++..+.+++.+.
T Consensus 345 Dp~y-IK~~KLeIL~~Lane~Nv----~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~--a~~cV~~Ll~ll~~~ 417 (746)
T PTZ00429 345 DPPF-VKLEKLRLLLKLVTPSVA----PEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSV--APDCANLLLQIVDRR 417 (746)
T ss_pred CcHH-HHHHHHHHHHHHcCcccH----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHH--HHHHHHHHHHHhcCC
Confidence 6664 899999998888764433 345555667778899999999999999999876543 567888888887664
Q ss_pred ccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhc---CCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCC
Q 007863 488 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINAS---KDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSED 564 (587)
Q Consensus 488 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l---~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d 564 (587)
.. +...++..+..+.+..+.. .+++.+...+ .=..+..|.+.++.+|+.+..++.. ..++..+.+-..+
T Consensus 418 ~~-~v~e~i~vik~IlrkyP~~----~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a---~~~L~~~i~~f~~ 489 (746)
T PTZ00429 418 PE-LLPQVVTAAKDIVRKYPEL----LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENG---KDIIQRFIDTIME 489 (746)
T ss_pred ch-hHHHHHHHHHHHHHHCccH----HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhH---HHHHHHHHhhhcc
Confidence 43 3335677788887655543 2444444432 1146889999999999988766432 2344333333345
Q ss_pred CCccHHHHHHHHHHHH
Q 007863 565 PDVDVRFFATQALQSK 580 (587)
Q Consensus 565 ~~~~Vr~~a~~al~~l 580 (587)
..+.||.....+..++
T Consensus 490 E~~~VqlqlLta~vKl 505 (746)
T PTZ00429 490 HEQRVQLAILSAAVKM 505 (746)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6778888776666544
No 32
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=8.8e-15 Score=150.78 Aligned_cols=407 Identities=17% Similarity=0.181 Sum_probs=290.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh-h---hhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh
Q 007863 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-A---HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 235 (587)
Q Consensus 160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-~---~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (587)
....+...+..++.+++|.+|++.+-+|-.++.+++. + ...++|..-|.+++.|.++.++..|.+.++-+.+.-+.
T Consensus 815 ~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~ 894 (1702)
T KOG0915|consen 815 RETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDS 894 (1702)
T ss_pred cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCc
Confidence 4567888899999999999999999999999999984 2 23467778889999999888888888876654322110
Q ss_pred --------------------------------------------------------hhhhhchHHHHHHhcC-CCchHHH
Q 007863 236 --------------------------------------------------------QDCVAHILPVIVNFSQ-DKSWRVR 258 (587)
Q Consensus 236 --------------------------------------------------------~~~~~~l~~~l~~~~~-d~~~~vR 258 (587)
+-..+.++=.+.++.+ +..|.-|
T Consensus 895 ~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk 974 (1702)
T KOG0915|consen 895 SLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSK 974 (1702)
T ss_pred hhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcc
Confidence 0001223333334443 4589999
Q ss_pred HHHHHHHHHHHHHhCCC--CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC--HHHHHHhHHHHHhHhcCCCcHH
Q 007863 259 YMVANQLYELCEAVGPE--PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--PELAIQHILPCVKELSSDSSQH 334 (587)
Q Consensus 259 ~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~~d~~~~ 334 (587)
+.|+..++.++...+.. .+...++|-+.++--|++..|+.+....+..+...-. -+.+.++++.-+...+.+..|+
T Consensus 975 ~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewR 1054 (1702)
T KOG0915|consen 975 KGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWR 1054 (1702)
T ss_pred cchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHH
Confidence 99999999999877653 3445789999999999999999998888888765311 1245677777777888999999
Q ss_pred HHHHHHHHHHhhhhhhchHHHHHhH---HHHHHHhcCCCChHHHHHHHH---HhHHhhhhhc-------hhhHhhhhHHH
Q 007863 335 VRSALATVIMGMAPILGKDATIEQL---LPIFLSLLKDEFPDVRLNIIS---KLDQVNQVIG-------IDLLSQSLLPA 401 (587)
Q Consensus 335 vr~~a~~~l~~l~~~~~~~~~~~~l---~~~l~~~l~d~~~~vr~~a~~---~l~~i~~~~~-------~~~~~~~~~~~ 401 (587)
||++.|-++..+...-+.+...+.+ ...+...+.|-.+.||.++-. ++++++-.++ .++....++|.
T Consensus 1055 VReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPf 1134 (1702)
T KOG0915|consen 1055 VREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPF 1134 (1702)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHH
Confidence 9999999999998776655555544 344445556667888887644 4555443322 23445667777
Q ss_pred HHHH-hcCCCcHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHcCCCchHH-------------------HHHHH--
Q 007863 402 IVEL-AEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSI-------------------RDAAA-- 457 (587)
Q Consensus 402 l~~~-~~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~v-------------------r~~a~-- 457 (587)
+.+- +-+.-..+|..++..+..+.+..|... +.+.+.|.+++....-.+.| |..++
T Consensus 1135 Ll~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aks 1214 (1702)
T KOG0915|consen 1135 LLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKS 1214 (1702)
T ss_pred HhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcC
Confidence 6542 236678999999999999998877542 34667777777665433322 22222
Q ss_pred ----HHHHHHHHHhChhhhhhchHHHHHhhhcCC-ccHHHHHHHHHHHHhhcccChH--HHHHhHHHHHHhhcCCCCccH
Q 007863 458 ----NNVKRLAEEFGPDWAMQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNI 530 (587)
Q Consensus 458 ----~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~v 530 (587)
+++..+....... ..++++|.+.+++... ....|.++...+..+...+|.+ ++...++..++...+|.++.+
T Consensus 1215 spmmeTi~~ci~~iD~~-vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv 1293 (1702)
T KOG0915|consen 1215 SPMMETINKCINYIDIS-VLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESV 1293 (1702)
T ss_pred CcHHHHHHHHHHhhhHH-HHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHH
Confidence 2233333333322 4588999998887655 5678899999999999888876 478889999999999999999
Q ss_pred HHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCc
Q 007863 531 KFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDV 567 (587)
Q Consensus 531 R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~ 567 (587)
|.....+.+.+...-.++.....+...+-.++.+.+.
T Consensus 1294 ~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es 1330 (1702)
T KOG0915|consen 1294 RKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDES 1330 (1702)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCC
Confidence 9999999999998877777666666665555544433
No 33
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.73 E-value=2.2e-16 Score=158.72 Aligned_cols=283 Identities=22% Similarity=0.288 Sum_probs=222.9
Q ss_pred hHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH------H
Q 007863 242 ILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP------E 314 (587)
Q Consensus 242 l~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------~ 314 (587)
+++.+...+.. .....|..|++.|..++.....+...+.++|.++.++.|++..||..|+.+|..+.....+ .
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan 502 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN 502 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch
Confidence 45555555544 3556788888888888888777666778899999999999999999999888888775532 2
Q ss_pred HHHHhHHHHHhHhcCC-CcHHHHHHHHHHHHhhhhhhc------h-------------------------HHHHHhHHHH
Q 007863 315 LAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPILG------K-------------------------DATIEQLLPI 362 (587)
Q Consensus 315 ~~~~~~~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~------~-------------------------~~~~~~l~~~ 362 (587)
.|.++++|.+..++.| ....||.+.+.+|+.++.... . ......+-..
T Consensus 503 iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~ 582 (1431)
T KOG1240|consen 503 IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQM 582 (1431)
T ss_pred hhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHH
Confidence 4667888999888888 667888888888888765321 0 0111234456
Q ss_pred HHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHH
Q 007863 363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM 442 (587)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 442 (587)
+..++.|+.+.||.+.++.+..++..+|.+.-.+.+++.+...++|++|..|.+..+.|..++-.+|.....+.++|++.
T Consensus 583 v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~ 662 (1431)
T KOG1240|consen 583 VSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQ 662 (1431)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHH
Confidence 67889999999999999999999999998887788999999999999999999999999999888898878899999999
Q ss_pred HHcCCCchHHHHHHHHHHHHHHHHhChh-hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHh
Q 007863 443 QWLKDKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVIN 521 (587)
Q Consensus 443 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~ 521 (587)
+.+.|....|-..|+.++..+++.---+ ....+++....-++-+||..+|.+++..|..+...++.....-.++|.+-.
T Consensus 663 Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irp 742 (1431)
T KOG1240|consen 663 QGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRP 742 (1431)
T ss_pred HhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHH
Confidence 9999999999999999999998732111 123445556666788999999999999999999888766555555555555
Q ss_pred hcC
Q 007863 522 ASK 524 (587)
Q Consensus 522 ~l~ 524 (587)
++.
T Consensus 743 fl~ 745 (1431)
T KOG1240|consen 743 FLE 745 (1431)
T ss_pred hhh
Confidence 444
No 34
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.2e-13 Score=128.54 Aligned_cols=423 Identities=16% Similarity=0.139 Sum_probs=297.2
Q ss_pred hcCchhHHHHHHHHHHHHHHhhcCh----hhHhhhhHHHHHHhhcCCCCcchhhHH-hhhhh--hccCCCHHHHHHHHHH
Q 007863 95 CTVEETCVRDKAVESLCRIGSQMRE----QDVVEHFIPLVKRLAAGEWFTARVSSC-GLFHV--AYPSAPEALKTELRTI 167 (587)
Q Consensus 95 ~~~~~~~vr~~a~~~l~~l~~~~~~----~~~~~~ll~~~~~l~~~~~~~~r~~a~-~l~~~--~~~~~~~~~~~~l~~~ 167 (587)
++|.--.-|++|+.-+..+.+.+-. +++.+.+-.+..++..+.....|..+. ++... ....-+..+.+.+++.
T Consensus 9 ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~P 88 (675)
T KOG0212|consen 9 LTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPP 88 (675)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHH
Confidence 3455567788888878777776432 233333333555555555444444322 21111 1112222377888888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh----hhhhhc
Q 007863 168 YRQLCQDDMPMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAH 241 (587)
Q Consensus 168 l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~ 241 (587)
+...++|++..||-.||+.+-++++....+ .+.+.+...+.++..|.+..||. +.+.+..+.+.+.. ....+.
T Consensus 89 v~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~tFsL~~ 167 (675)
T KOG0212|consen 89 VLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESASTFSLPE 167 (675)
T ss_pred HHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccccccccCHHH
Confidence 899999999999999999999999987663 46678888899999999888886 45666666655443 223567
Q ss_pred hHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC--CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH---H
Q 007863 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL---A 316 (587)
Q Consensus 242 l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~ 316 (587)
++|.+..-+.+.++.+|.....++..+-..-+-+ .+.+.+++.+..+++|+..+||..+-.+++.+...+..++ -
T Consensus 168 ~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d 247 (675)
T KOG0212|consen 168 FIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMD 247 (675)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccC
Confidence 8999999999999999999999988654321111 1245689999999999999999999999999887664431 2
Q ss_pred HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHH--HHHhHHHHHHHhcCCCChH-HHHHHHHHhHHhhhhhchhh
Q 007863 317 IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPD-VRLNIISKLDQVNQVIGIDL 393 (587)
Q Consensus 317 ~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~i~~~~~~~~ 393 (587)
.+...+.+..-+.++++.++..|+.++.++.+..|.+. +...++..+..++.|.++. ++..+...=+.+.+..+.+.
T Consensus 248 ~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~ 327 (675)
T KOG0212|consen 248 YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSER 327 (675)
T ss_pred cccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhh
Confidence 35677888888899999999999999999998887654 3345666677777777663 55444433333333333221
Q ss_pred H-----hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Q 007863 394 L-----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (587)
Q Consensus 394 ~-----~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 466 (587)
. ...++..+...+.+.....|.+++.++..+-...+.+.+ .+.+.+.++.-+.|++.+|-..++..++.++..
T Consensus 328 ~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 328 LKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred hccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 1 135778888888999999999999999999888877654 367888899999999999999999999999874
Q ss_pred hChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHH
Q 007863 467 FGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV 519 (587)
Q Consensus 467 ~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l 519 (587)
-..... -.++..+.+++.....-++..+...+.+++-.+.++.++..+-..+
T Consensus 408 ~~~~~~-~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~IL 459 (675)
T KOG0212|consen 408 SNSPNL-RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADIL 459 (675)
T ss_pred cccccH-HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHH
Confidence 332111 3345555666555555566667777888887777765544444433
No 35
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=3.4e-14 Score=134.39 Aligned_cols=366 Identities=14% Similarity=0.142 Sum_probs=258.6
Q ss_pred cCchhHHHHHHHHHHHHhcccC--h--hhhhhchHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCC---CCcccchHHH
Q 007863 213 DDQDSVRLLAVEGCGALGKLLE--P--QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPA 284 (587)
Q Consensus 213 d~~~~vr~~a~~~l~~l~~~~~--~--~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~ 284 (587)
++++..+..+...+..+...-. + +-....++|.+..++. +.++.++..|+.+|.+++..-.. -......+|.
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~ 156 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPI 156 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHH
Confidence 3334445555555554443322 1 2234467888877775 77799999999999999864221 2234467899
Q ss_pred HHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhHHHHHhHhcCCCcH-HHHHHHHHHHHhhhhhhc---hHHHHH
Q 007863 285 YVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQ-HVRSALATVIMGMAPILG---KDATIE 357 (587)
Q Consensus 285 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~---~~~~~~ 357 (587)
|+.++.+++..|++.|+.+|+.++.....- -....+++.+..++..++. ...+.+.+++..++..-. +-....
T Consensus 157 fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~ 236 (514)
T KOG0166|consen 157 FIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVA 236 (514)
T ss_pred HHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 999999999999999999999987642211 2223456666666655553 677788899999987652 123456
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh---hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh---
Q 007863 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--- 431 (587)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--- 431 (587)
.++|.+..++.+.+++|...++++++.+...-... .+...+.|.+..++...+..++..+++.++.++..-+..
T Consensus 237 ~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~ 316 (514)
T KOG0166|consen 237 PILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQV 316 (514)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHH
Confidence 78999999999999999999999999987543221 123467899999999999999999999998876532211
Q ss_pred hHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHhChh-----hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcc
Q 007863 432 FFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPD-----WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV 505 (587)
Q Consensus 432 ~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~ 505 (587)
......+|.+..++. .+...+|+.|+-.++++.. |.. .+...++|.+...+...++..|..|+++|+++...
T Consensus 317 vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 317 VINSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 122456888888887 5666799999999999986 332 14478999999999999999999999999999876
Q ss_pred cChHH----HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch------HHHHH-----hHHHHHHHhcCCCCccHH
Q 007863 506 MGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ------SVVEK-----SIRPCLVELSEDPDVDVR 570 (587)
Q Consensus 506 ~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~-----~i~~~l~~l~~d~~~~Vr 570 (587)
...+. +...+++.+..+|.-.+..+-..++.++..+.+..+. +.+.. .-+..+..|....+.++.
T Consensus 395 g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy 474 (514)
T KOG0166|consen 395 GTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIY 474 (514)
T ss_pred CCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHH
Confidence 55543 2345778888888766777777888888887654322 11111 224566667677777777
Q ss_pred HHHHHHHHHH
Q 007863 571 FFATQALQSK 580 (587)
Q Consensus 571 ~~a~~al~~l 580 (587)
..|.+.+++.
T Consensus 475 ~~A~~II~~y 484 (514)
T KOG0166|consen 475 KKAYKIIDTY 484 (514)
T ss_pred HHHHHHHHHh
Confidence 7776666543
No 36
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.4e-13 Score=130.29 Aligned_cols=341 Identities=17% Similarity=0.154 Sum_probs=247.6
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC----CcccchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhCHH---
Q 007863 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPE--- 314 (587)
Q Consensus 243 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~--- 314 (587)
.+.........+...+..+...+..+...-... .....++|.++..++ +.++.++..|+.+|..++......
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 344444444555555666666666655432211 112358899999886 667999999999999998854332
Q ss_pred HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch--H-HHHHhHHHHHHHhcCCCCh-HHHHHHHHHhHHhhhhhc
Q 007863 315 LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--D-ATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIG 390 (587)
Q Consensus 315 ~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~i~~~~~ 390 (587)
......+|.+..++.+++..|+..++.+++.++...+. + .....+++.+..++....+ .....+.++|..++..-.
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 22345789999999999999999999999999854321 1 1223455666666666554 677788999999997653
Q ss_pred hh---hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 007863 391 ID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA 464 (587)
Q Consensus 391 ~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 464 (587)
+. .....++|.+..++.+.+..|...++.++..+....... .....++|.+..++......|+..|+.++|.++
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 21 234678999999999999999999999999988654322 123457889999999999999999999999987
Q ss_pred HHhChhh---hhhchHHHHHhhhc-CCccHHHHHHHHHHHHhhcccChH---HHHHhHHHHHHhhcCCCCccHHHHHHHH
Q 007863 465 EEFGPDW---AMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKV 537 (587)
Q Consensus 465 ~~~~~~~---~~~~~~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~ 537 (587)
...+... +....+|.+..++. ++...+|..|++++++|...-... .+...++|.++.+++.....+|..|+++
T Consensus 308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa 387 (514)
T KOG0166|consen 308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA 387 (514)
T ss_pred eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence 5322221 34678999998887 667779999999999998622211 2456789999999999999999999999
Q ss_pred HHHHHhhhchH----HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHH
Q 007863 538 LQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 583 (587)
Q Consensus 538 l~~l~~~~~~~----~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~ 583 (587)
++.+...-.++ -+...+++.+-.++.-+|.++-..+..|+..+-++
T Consensus 388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 99998765543 23345677777777777777766666676665543
No 37
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=5.5e-14 Score=123.89 Aligned_cols=384 Identities=15% Similarity=0.136 Sum_probs=273.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHhcccCchhHHHHHHHHHHHHhcccChh--
Q 007863 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKS---EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ-- 236 (587)
Q Consensus 162 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~---~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-- 236 (587)
.+....+..+++++++.+..+++.++|+++-..+.....- -+-+++.++..|. ..+|+.++.|+..++..-+..
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d~nk~k 162 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATFDSNKVK 162 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhccccchhh
Confidence 3444555677889999999999999999887665432222 2344666777765 567999999999988763221
Q ss_pred hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC--CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH
Q 007863 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE 314 (587)
Q Consensus 237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 314 (587)
.-...-+..+.++-+.++..+|..+..+|..+.+.... ......-+|+++++++..+..||..|..+++.++-.-...
T Consensus 163 iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~R 242 (550)
T KOG4224|consen 163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRAR 242 (550)
T ss_pred hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHH
Confidence 11122344455588889999999999999888765432 2334457899999999999999999999999997643221
Q ss_pred ----HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc--hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhh
Q 007863 315 ----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (587)
Q Consensus 315 ----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~ 388 (587)
..-++++|.+.+++.|++++++..|..++..++..-. .+.....-+|.+.++++++.-..-.+..-++..+.-+
T Consensus 243 k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih 322 (550)
T KOG4224|consen 243 KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH 322 (550)
T ss_pred HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc
Confidence 1124589999999999999999999999999875432 2223344679999999888766666666677666544
Q ss_pred hchhhH--hhhhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 007863 389 IGIDLL--SQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKR 462 (587)
Q Consensus 389 ~~~~~~--~~~~~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 462 (587)
-+++.. ...++..+.+++. ..+..++..+...+..++.... ..++...-+|.+..++.|..-+||...-.+++.
T Consensus 323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~ 402 (550)
T KOG4224|consen 323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQ 402 (550)
T ss_pred cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHH
Confidence 333321 1334555566665 4566688888888888776432 222334568888899999999999998888888
Q ss_pred HHHHh--ChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH-H-------HHHhHHHHHHhhcCCCCccHHH
Q 007863 463 LAEEF--GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE-I-------TCSQLLPVVINASKDRVPNIKF 532 (587)
Q Consensus 463 l~~~~--~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-~-------~~~~~l~~l~~~l~d~~~~vR~ 532 (587)
+.-.- ...+....++|.+..+..+.+.++|-.++.++.+++.....- . -.+.+-..+..++.+....+|.
T Consensus 403 Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~h 482 (550)
T KOG4224|consen 403 LALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRH 482 (550)
T ss_pred HHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHH
Confidence 76432 222234678899999999999999999999999998744321 0 0234556677777887888888
Q ss_pred HHHHHHHHHHhhhc
Q 007863 533 NVAKVLQSLIPIVD 546 (587)
Q Consensus 533 ~a~~~l~~l~~~~~ 546 (587)
.+.+++.++.+...
T Consensus 483 ia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 483 IARWTIQQLLEDHD 496 (550)
T ss_pred HHHHHHHHHHHhCC
Confidence 88888888877644
No 38
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=6.5e-10 Score=112.24 Aligned_cols=424 Identities=17% Similarity=0.145 Sum_probs=269.7
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccC-chhHHHHHHHHHHHHhcccC-hh
Q 007863 159 ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLE-PQ 236 (587)
Q Consensus 159 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~-~~ 236 (587)
+..+.+++.+...+.|.+..||..|++.+|.+....+. ...++.+.....+.+.- ++.....++-+|+.++..-- ..
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~-~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP-ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH-HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 45678888888999999999999999999999999885 44444444444444433 46677788888888875421 12
Q ss_pred hhhhchHHHHHHhcCC--------CchHHHHHHHHHHHHHHHHhCCCCccc---chH-HHHHHhcCCChHHHHHHHHHhH
Q 007863 237 DCVAHILPVIVNFSQD--------KSWRVRYMVANQLYELCEAVGPEPTRS---DVV-PAYVRLLRDNEAEVRIAAAGKV 304 (587)
Q Consensus 237 ~~~~~l~~~l~~~~~d--------~~~~vR~~a~~~l~~l~~~~~~~~~~~---~l~-~~l~~~l~d~~~~vr~~a~~~l 304 (587)
...+.++|.+.+.+.- ....||.+|+-.+..++....+....+ .+. ..+...+-|++.++|.+|..++
T Consensus 416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 2456788888876652 345799999999999988776543333 122 2334456899999999999888
Q ss_pred HHHHHhhCH-----H-------------------------HHHHhHHHHHhHhcCC----CcHHHHHHHHHHHHhhhhhh
Q 007863 305 TKICRILNP-----E-------------------------LAIQHILPCVKELSSD----SSQHVRSALATVIMGMAPIL 350 (587)
Q Consensus 305 ~~l~~~~~~-----~-------------------------~~~~~~~~~l~~~~~d----~~~~vr~~a~~~l~~l~~~~ 350 (587)
.+.....+. + .+....-|.+..++.. =+..+|..++.++..+...-
T Consensus 496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~ 575 (1133)
T KOG1943|consen 496 QENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE 575 (1133)
T ss_pred HHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh
Confidence 665443221 0 0111122333333333 35678999999999976554
Q ss_pred chHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh----------hH--hhhhHHHHHHHhcCCC--cHHHHH
Q 007863 351 GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----------LL--SQSLLPAIVELAEDRH--WRVRLA 416 (587)
Q Consensus 351 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~----------~~--~~~~~~~l~~~~~~~~--~~vr~~ 416 (587)
+ +...+..+|.++......+...|.++..+.+++....-.- .+ ...++|.+....-++. .-+|..
T Consensus 576 p-k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~ 654 (1133)
T KOG1943|consen 576 P-KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQA 654 (1133)
T ss_pred H-HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHH
Confidence 3 3334455666666666667888888888887776443110 00 0112333332222221 345666
Q ss_pred HHHHHHHHHHhh---ChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh--ChhhhhhchHHHHHhhhcCC-ccH
Q 007863 417 IIEYIPLLASQL---GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF--GPDWAMQHIVPQVLEMINNP-HYL 490 (587)
Q Consensus 417 ~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~~~~~l~~~l~~~-~~~ 490 (587)
..+.+..+...- ..+.+......++.+.+.+++ .+|.+|..+++.++..+ +++.....++......+.++ +..
T Consensus 655 ~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~ 733 (1133)
T KOG1943|consen 655 TLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEER 733 (1133)
T ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHH
Confidence 666665554321 123444555666667776667 89999999999998754 22222233555555555555 677
Q ss_pred HHHHHHHHHHHhhcccChHHHHHhHHHHHHhhc-CCCCccHHHHHHHHHHHHHhhhch-------HHHHHhHHHHHHHhc
Q 007863 491 YRMTILQAISLLAPVMGSEITCSQLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQ-------SVVEKSIRPCLVELS 562 (587)
Q Consensus 491 ~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~-------~~~~~~i~~~l~~l~ 562 (587)
+|.....+++.+....=.....+.+...++... .|..+.-|...+.++..++...+. +.+.+.++.++....
T Consensus 734 ~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYt 813 (1133)
T KOG1943|consen 734 IRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYT 813 (1133)
T ss_pred HHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc
Confidence 888888888777642222223445544444433 344888999999999999888762 355566777777778
Q ss_pred CCCCccH----HHHHHHHHHHHHHHhh
Q 007863 563 EDPDVDV----RFFATQALQSKDQVMM 585 (587)
Q Consensus 563 ~d~~~~V----r~~a~~al~~l~~~~~ 585 (587)
.|...|| |..|.+++..+-..+.
T Consensus 814 td~rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 814 TDSRGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred cccCccHHHHHHHHHHHHHHhhhhhhc
Confidence 8887775 8888888888766554
No 39
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=3.2e-11 Score=117.11 Aligned_cols=386 Identities=17% Similarity=0.158 Sum_probs=254.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHH
Q 007863 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244 (587)
Q Consensus 165 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 244 (587)
+..+.+.+.|+|+.+|..|+..|..+-- +-+.+.++-.+.+...|..+.||+.|+.++.++.+.-+. ..+.+..
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsIRv----p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e--~k~qL~e 183 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSIRV----PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE--QKDQLEE 183 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcch----hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh--hHHHHHH
Confidence 3556778889999999888888877532 234455666677788888888999999888888765443 3457888
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchH---HHHHHhcCCChHHHHHHHHHhHHHHHHhhC---------
Q 007863 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV---PAYVRLLRDNEAEVRIAAAGKVTKICRILN--------- 312 (587)
Q Consensus 245 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~---~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--------- 312 (587)
.+..++.|.++.|--+|+.++..+|..- .+-+- .-+.+++.|-+..=+...+..|-+.+.+.=
T Consensus 184 ~I~~LLaD~splVvgsAv~AF~evCPer-----ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~ 258 (968)
T KOG1060|consen 184 VIKKLLADRSPLVVGSAVMAFEEVCPER-----LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSS 258 (968)
T ss_pred HHHHHhcCCCCcchhHHHHHHHHhchhH-----HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccc
Confidence 8888899999988888888888776421 01111 223344455554444455555555554310
Q ss_pred -------------------H---HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCC
Q 007863 313 -------------------P---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE 370 (587)
Q Consensus 313 -------------------~---~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 370 (587)
+ +.-...++...+.++.+.++.|-.++++.+..++... -...+...+..+|...
T Consensus 259 ~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~----~~~~i~kaLvrLLrs~ 334 (968)
T KOG1060|consen 259 LEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN----QVTKIAKALVRLLRSN 334 (968)
T ss_pred cccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH----HHHHHHHHHHHHHhcC
Confidence 0 1112345666677788888888888888887776332 2344556666666653
Q ss_pred ChHHHHHHHHHhHHhhhhhc--------------------------------hhhHhhhhHHHHHHHhcCCCcHHHHHHH
Q 007863 371 FPDVRLNIISKLDQVNQVIG--------------------------------IDLLSQSLLPAIVELAEDRHWRVRLAII 418 (587)
Q Consensus 371 ~~~vr~~a~~~l~~i~~~~~--------------------------------~~~~~~~~~~~l~~~~~~~~~~vr~~~~ 418 (587)
.++|...+.++..++..-. .+.-...+++.+...+.+.+.++-..++
T Consensus 335 -~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV 413 (968)
T KOG1060|consen 335 -REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAV 413 (968)
T ss_pred -CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHH
Confidence 6777777777776653210 0111244666666677777777888888
Q ss_pred HHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCC-ccHHHHHHHH
Q 007863 419 EYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP-HYLYRMTILQ 497 (587)
Q Consensus 419 ~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~~r~~a~~ 497 (587)
+++|..+...+. +.++.+.-++.++.+++..|-.+++..+..+...-..+ ...++..+..++..- -+.-|.+.+|
T Consensus 414 ~AiGrCA~~~~s--v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~--h~~ii~~La~lldti~vp~ARA~IiW 489 (968)
T KOG1060|consen 414 KAIGRCASRIGS--VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE--HLEILFQLARLLDTILVPAARAGIIW 489 (968)
T ss_pred HHHHHHHHhhCc--hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHH--HHHHHHHHHHHhhhhhhhhhhceeee
Confidence 899888877654 35678888888899999999999999999988754433 234666666655332 3556778888
Q ss_pred HHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHh-cCCCCccHHHHHH
Q 007863 498 AISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL-SEDPDVDVRFFAT 574 (587)
Q Consensus 498 ~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l-~~d~~~~Vr~~a~ 574 (587)
.++..+.... .+.+.++..+.+-+.|+.+.||..++..-..+.-.-. +.+ +.+..-+.++ --|...++|.++.
T Consensus 490 Lige~~e~vp--ri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~-~~~-kll~~Yv~~L~~yD~sYDiRDRaR 563 (968)
T KOG1060|consen 490 LIGEYCEIVP--RIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNI-DQT-KLLVQYVFELARYDLSYDIRDRAR 563 (968)
T ss_pred eehhhhhhcc--hhchHHHHHHHHhhccccchhhHHHHHhhhhheEech-hhH-HHHHHHHHHHhccCCCcchhHHHH
Confidence 8887776432 2345666677777889999999999888887754322 222 2333333343 4577888887764
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.56 E-value=3.8e-11 Score=119.61 Aligned_cols=374 Identities=16% Similarity=0.153 Sum_probs=252.9
Q ss_pred HHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHH
Q 007863 207 FEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVP 283 (587)
Q Consensus 207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~ 283 (587)
+...+++.+.+.-..++.+|..+.+........+.+.+.+...+.++++.||..+++.++.++..-.. -.....+++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 44445555555556788889998888877666888999999999999999999999998887643211 123457899
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH---HHHHh
Q 007863 284 AYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQ 358 (587)
Q Consensus 284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~ 358 (587)
.+..++.|++.+|...|+++|..+++.-..- .+.+...+.+..++..++..+|..+.+.+..++..-... .....
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sg 202 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSG 202 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence 9999999999999999999999998742211 112334777888887778889999999888887553211 12234
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhh--HhhhhHHHHHHHhcCC--CcHHH----HHHHHHHHHHHHhhCh
Q 007863 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDR--HWRVR----LAIIEYIPLLASQLGV 430 (587)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~~~~~l~~~~~~~--~~~vr----~~~~~~l~~l~~~~~~ 430 (587)
+++.+...+++++.-+|..++..+..++..-..-. ....+++.+.+.+.+. +++.+ -..++..+.++.. .+
T Consensus 203 ll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~ 281 (503)
T PF10508_consen 203 LLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SP 281 (503)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-Ch
Confidence 78888888999999999999999999987322211 2345778887776542 23111 1233455555543 22
Q ss_pred hhH---HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh-h-------hhchHHHHHhhhcCCccHHHHHHHHHH
Q 007863 431 GFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW-A-------MQHIVPQVLEMINNPHYLYRMTILQAI 499 (587)
Q Consensus 431 ~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~-------~~~~~~~l~~~l~~~~~~~r~~a~~~l 499 (587)
..+ .+.++..+...+.+.+...+..|+.++|.++....... . ...++..+..........+|..++.++
T Consensus 282 ~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al 361 (503)
T PF10508_consen 282 QEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHAL 361 (503)
T ss_pred HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 222 25667777788889999999999999999986443221 1 133444445555666678999999999
Q ss_pred HHhhcccCh---H--------HH---HHhHHH-HHHhhcCCCCccHHHHHHHHHHHHHhhhch-HHH--HHhHHHHHHHh
Q 007863 500 SLLAPVMGS---E--------IT---CSQLLP-VVINASKDRVPNIKFNVAKVLQSLIPIVDQ-SVV--EKSIRPCLVEL 561 (587)
Q Consensus 500 ~~l~~~~~~---~--------~~---~~~~l~-~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~~--~~~i~~~l~~l 561 (587)
+.+...... + +| .+.-.. .+...++.|-+++|.++.+.+..++.+-.. ..+ ...+++.+..-
T Consensus 362 ~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr 441 (503)
T PF10508_consen 362 ASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDR 441 (503)
T ss_pred HHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCC
Confidence 999643322 1 11 111122 677888999999999999999999876322 111 12344444444
Q ss_pred cCCCCccHHHHHHHHHHHHH
Q 007863 562 SEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 562 ~~d~~~~Vr~~a~~al~~l~ 581 (587)
..+++.+++..=...+..+.
T Consensus 442 ~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 442 STETTKEGKEAKYDIIKALA 461 (503)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 45666666665555555554
No 41
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=3.8e-11 Score=116.61 Aligned_cols=396 Identities=16% Similarity=0.142 Sum_probs=262.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhh
Q 007863 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240 (587)
Q Consensus 161 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 240 (587)
...++|-+.+.....+.+||+-+--.|-..++.-++... --+..+++-++|+++-+|..|++.+..+--. .+.+
T Consensus 69 vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL--LSIntfQk~L~DpN~LiRasALRvlSsIRvp----~IaP 142 (968)
T KOG1060|consen 69 VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL--LSINTFQKALKDPNQLIRASALRVLSSIRVP----MIAP 142 (968)
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee--eeHHHHHhhhcCCcHHHHHHHHHHHHhcchh----hHHH
Confidence 466778788888888999999888777777765433221 1256788899999999999999999876321 1344
Q ss_pred chHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhH
Q 007863 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHI 320 (587)
Q Consensus 241 ~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 320 (587)
-++-.+.++..|.++.||+.|+.++.++... +.+. +.++...+-.++.|.++-|--+|+.++..++-. .-...+.-
T Consensus 143 I~llAIk~~~~D~s~yVRk~AA~AIpKLYsL-d~e~-k~qL~e~I~~LLaD~splVvgsAv~AF~evCPe--rldLIHkn 218 (968)
T KOG1060|consen 143 IMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL-DPEQ-KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE--RLDLIHKN 218 (968)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC-Chhh-HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchh--HHHHhhHH
Confidence 4555667788999999999999999987653 3333 347999999999999999999999999988652 11222222
Q ss_pred HHHHhHhcCCCcHHHHHHHHHHHHhhhhhh-c-h-----------------------------HHHHHhHHHHHHHhcCC
Q 007863 321 LPCVKELSSDSSQHVRSALATVIMGMAPIL-G-K-----------------------------DATIEQLLPIFLSLLKD 369 (587)
Q Consensus 321 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~-~-----------------------------~~~~~~l~~~l~~~l~d 369 (587)
...+.+++-|-+.+=+..++..|...+.+. . + +.-...++.....++..
T Consensus 219 yrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S 298 (968)
T KOG1060|consen 219 YRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQS 298 (968)
T ss_pred HHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhc
Confidence 333445556666666666666666655432 0 0 11123345556677888
Q ss_pred CChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH----------------
Q 007863 370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF---------------- 433 (587)
Q Consensus 370 ~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~---------------- 433 (587)
.++.|..++++.+-.+++.... ..+...+..++.+ +..+|...+..+..++..- +..|
T Consensus 299 ~n~sVVmA~aql~y~lAP~~~~----~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~-~~lF~P~lKsFfv~ssDp~~ 372 (968)
T KOG1060|consen 299 RNPSVVMAVAQLFYHLAPKNQV----TKIAKALVRLLRS-NREVQYVVLQNIATISIKR-PTLFEPHLKSFFVRSSDPTQ 372 (968)
T ss_pred CCcHHHHHHHhHHHhhCCHHHH----HHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcc-hhhhhhhhhceEeecCCHHH
Confidence 8999999999998888765422 2334444444332 3344555555555554321 0000
Q ss_pred -----------------HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHH
Q 007863 434 -----------------DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTIL 496 (587)
Q Consensus 434 -----------------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~ 496 (587)
...+++-+...+.+.+.++-..|++++|.++...+. ..+..+..+..++.+.+..|-..++
T Consensus 373 vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s--v~~tCL~gLv~Llsshde~Vv~eaV 450 (968)
T KOG1060|consen 373 VKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS--VTDTCLNGLVQLLSSHDELVVAEAV 450 (968)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc--hhhHHHHHHHHHHhcccchhHHHHH
Confidence 123455555566777777888888888888877654 2467788888888888888888888
Q ss_pred HHHHHhhcccChHHHHHhHHHHHHhhcCC-CCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHH
Q 007863 497 QAISLLAPVMGSEITCSQLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQ 575 (587)
Q Consensus 497 ~~l~~l~~~~~~~~~~~~~l~~l~~~l~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~ 575 (587)
..|..+.+.-+.+. .+++..+.+++.. ..+.-|...++.++..+..++ .+...++..+.+-..|....|+..+..
T Consensus 451 ~vIk~Llq~~p~~h--~~ii~~La~lldti~vp~ARA~IiWLige~~e~vp--ri~PDVLR~laksFs~E~~evKlQILn 526 (968)
T KOG1060|consen 451 VVIKRLLQKDPAEH--LEILFQLARLLDTILVPAARAGIIWLIGEYCEIVP--RIAPDVLRKLAKSFSDEGDEVKLQILN 526 (968)
T ss_pred HHHHHHHhhChHHH--HHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcc--hhchHHHHHHHHhhccccchhhHHHHH
Confidence 88888887554432 2345555555532 367888888888888877643 233455555566567778888776655
Q ss_pred HHH
Q 007863 576 ALQ 578 (587)
Q Consensus 576 al~ 578 (587)
.-.
T Consensus 527 L~a 529 (968)
T KOG1060|consen 527 LSA 529 (968)
T ss_pred hhh
Confidence 433
No 42
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=2.9e-12 Score=113.19 Aligned_cols=375 Identities=17% Similarity=0.180 Sum_probs=254.7
Q ss_pred HHHhcccCchhHHHHHHHHHHHHhcccChhhhh---hchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC--CCcccch
Q 007863 207 FEELTQDDQDSVRLLAVEGCGALGKLLEPQDCV---AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDV 281 (587)
Q Consensus 207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l 281 (587)
+..++++.++.+...+...++.++-........ ..+-+++.+...|. ..+|..+..|+.+++..-.. ......-
T Consensus 90 vl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d~nk~kiA~sGa 168 (550)
T KOG4224|consen 90 VLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATFDSNKVKIARSGA 168 (550)
T ss_pred HHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhccccchhhhhhccc
Confidence 344677788899999999999888766542221 22345566666554 56788888999888765221 1112234
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc-hH---HH
Q 007863 282 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG-KD---AT 355 (587)
Q Consensus 282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-~~---~~ 355 (587)
+..+.++-+.++..||..+..+|..+....... .+...-+|.+..++...+..+|..++.+++.++-.-- .. ..
T Consensus 169 L~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqa 248 (550)
T KOG4224|consen 169 LEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQA 248 (550)
T ss_pred hhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhc
Confidence 555666888899999999999999887754433 2234568999999999999999999999998863321 11 12
Q ss_pred HHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch--hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH
Q 007863 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 433 (587)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~ 433 (587)
.+.++|.+..++.|.++.|+..|..+|..++..-.. +.....-+|.+.++++++.-..-.+.+-++..++-+-+.+..
T Consensus 249 ep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~l 328 (550)
T KOG4224|consen 249 EPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVL 328 (550)
T ss_pred ccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccc
Confidence 356899999999999999999999999998865322 122335689999999888766655555555544433333221
Q ss_pred --HHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhChh---hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhh--cc
Q 007863 434 --DDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLA--PV 505 (587)
Q Consensus 434 --~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~--~~ 505 (587)
...++..+..++.-. +.+++..|...|..++...... ++....+|.+.+++.|....+|...-.++..++ ..
T Consensus 329 I~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~ 408 (550)
T KOG4224|consen 329 IADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDN 408 (550)
T ss_pred eecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc
Confidence 122344455666544 4559999999999887644332 345678999999988886656555555555444 43
Q ss_pred cChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch-HH-------HHHhHHHHHHHhcCCCCccHHHHHHHHH
Q 007863 506 MGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-SV-------VEKSIRPCLVELSEDPDVDVRFFATQAL 577 (587)
Q Consensus 506 ~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~-------~~~~i~~~l~~l~~d~~~~Vr~~a~~al 577 (587)
.........++|.+..+..+.+.+||-+++.+|..++...+. .. -.+.+---|...+...+..+|..|.+++
T Consensus 409 ~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI 488 (550)
T KOG4224|consen 409 DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTI 488 (550)
T ss_pred cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333466889999999999999999999999999876432 00 0123344455555666667777777777
Q ss_pred HHHHH
Q 007863 578 QSKDQ 582 (587)
Q Consensus 578 ~~l~~ 582 (587)
.++.+
T Consensus 489 ~qLle 493 (550)
T KOG4224|consen 489 QQLLE 493 (550)
T ss_pred HHHHH
Confidence 66643
No 43
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=6.3e-11 Score=115.79 Aligned_cols=435 Identities=14% Similarity=0.153 Sum_probs=286.9
Q ss_pred hHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhH
Q 007863 121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLK 200 (587)
Q Consensus 121 ~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~ 200 (587)
+....+.+++..+.+.+ ...+. -+.++-..+....+......++.+..-+.|++|.+|..|.+.++.+- -+...
T Consensus 46 DvSslF~dvvk~~~T~d-lelKK-lvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~----v~~i~ 119 (734)
T KOG1061|consen 46 DVSSLFPDVVKCMQTRD-LELKK-LVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR----VDKIT 119 (734)
T ss_pred chHhhhHHHHhhcccCC-chHHH-HHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe----ehHHH
Confidence 34444445555444444 22222 23333334444545666778888999999999999999999888753 24566
Q ss_pred HHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCc---
Q 007863 201 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--- 277 (587)
Q Consensus 201 ~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~--- 277 (587)
.++..-+...++|+++.+|..++.+..++...-++......+++.+..++.|.++.|-..|..++..+...-.....
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l 199 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLEL 199 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccc
Confidence 77888888899999999999999999998776555445667899999999999999999999999998875432111
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH-HHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch--HH
Q 007863 278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL-AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--DA 354 (587)
Q Consensus 278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~ 354 (587)
...++..+...+++-+.. +-+..+..+.....++. -...+...+...+.+.+..|-..+.+.+-.....+.. +.
T Consensus 200 ~~~~~~~lL~al~ec~EW---~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~ 276 (734)
T KOG1061|consen 200 NPQLINKLLEALNECTEW---GQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNEL 276 (734)
T ss_pred cHHHHHHHHHHHHHhhhh---hHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHH
Confidence 112333333333332222 22333444444443321 1245666666777778888887888777777666553 33
Q ss_pred HHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch--------------------------------hhHhhhhHHHH
Q 007863 355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--------------------------------DLLSQSLLPAI 402 (587)
Q Consensus 355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--------------------------------~~~~~~~~~~l 402 (587)
....+-|.+..++.... ++...++..+..+...... +...+.+++.+
T Consensus 277 ~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El 355 (734)
T KOG1061|consen 277 LFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAEL 355 (734)
T ss_pred HHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 44555566666665554 7777777777766543211 11123344444
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHh
Q 007863 403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE 482 (587)
Q Consensus 403 ~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ 482 (587)
.....+-+.+.-..++++++.++-..... ..++..++.+++-...-|.+.++..+..+.+.+...+ +.+++.+..
T Consensus 356 ~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~--~~vv~~l~~ 430 (734)
T KOG1061|consen 356 KEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY--ESVVAILCE 430 (734)
T ss_pred HHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch--hhhhhhhcc
Confidence 55555666676677788888877655443 5678888888887777778888888888888776552 555555544
Q ss_pred hhcC-CccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHh
Q 007863 483 MINN-PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL 561 (587)
Q Consensus 483 ~l~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l 561 (587)
.+.. .++.-|.+-+|.++..++.+... .+++..+.+...|+...|+...+.+.-.+.-..+. ...+.+...|...
T Consensus 431 ~~~sl~epeak~amiWilg~y~~~i~~a---~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~-~tq~~l~~vL~~~ 506 (734)
T KOG1061|consen 431 NLDSLQEPEAKAALIWILGEYAERIENA---LELLESFLENFKDETAEVQLELLTAAIKLFLKKPT-ETQELLQGVLPLA 506 (734)
T ss_pred cccccCChHHHHHHHHHHhhhhhccCcH---HHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHhhh
Confidence 3322 35678999999999998877654 67888888889999999998888888777655443 3334445555555
Q ss_pred cCCC-CccHHHHHH
Q 007863 562 SEDP-DVDVRFFAT 574 (587)
Q Consensus 562 ~~d~-~~~Vr~~a~ 574 (587)
..|. ++++|..+.
T Consensus 507 ~~d~~~~dlrDr~l 520 (734)
T KOG1061|consen 507 TADTDNPDLRDRGL 520 (734)
T ss_pred hccccChhhhhhHH
Confidence 5555 468988765
No 44
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.49 E-value=1.1e-09 Score=103.07 Aligned_cols=472 Identities=12% Similarity=0.064 Sum_probs=276.1
Q ss_pred hHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHH
Q 007863 83 YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKT 162 (587)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~ 162 (587)
.+..++-.+.++.++.|+..|+..-.++..+...- ++ ..-..-.++..+...-...++-.|+.-+-.+ .+++...
T Consensus 62 ~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~t-ed-vlm~tssiMkD~~~g~~~~~kp~AiRsL~~V---id~~tv~ 136 (898)
T COG5240 62 TATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLT-ED-VLMGTSSIMKDLNGGVPDDVKPMAIRSLFSV---IDGETVY 136 (898)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcc-hh-hhHHHHHHHHhhccCCccccccHHHHHHHHh---cCcchhh
Confidence 34566667888899999999998888887766532 11 1111112222222222334555555433222 2233334
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhccc------------CchhHHHHHHHHHHH
Q 007863 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQD------------DQDSVRLLAVEGCGA 228 (587)
Q Consensus 163 ~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d------------~~~~vr~~a~~~l~~ 228 (587)
.+-.++.+..-++.+.+|.++.-.--.+...... ..+..+.......+.+. ..+-.+-.|+..|-.
T Consensus 137 ~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq 216 (898)
T COG5240 137 DFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQ 216 (898)
T ss_pred hHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHH
Confidence 4555666777788888887765443333322111 01111111111111110 111223333333322
Q ss_pred HhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC-CCCcccchHHHHHHhcCCChHHHHHHHHHhHHHH
Q 007863 229 LGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG-PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKI 307 (587)
Q Consensus 229 l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 307 (587)
+-.. + .-..+..+..+..+.+-+-..+....+..+...+. .......+.|.+...++|.-..|...+++++..+
T Consensus 217 ~kr~---d--kma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~ 291 (898)
T COG5240 217 SKRT---D--KMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCAL 291 (898)
T ss_pred Hhcc---c--HHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence 2110 0 00111222222222211111111111111111111 1122345778888888898889999999999888
Q ss_pred HHhh-CHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhh
Q 007863 308 CRIL-NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (587)
Q Consensus 308 ~~~~-~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~ 386 (587)
+... +++. ....+..+..+++.+....|-+|.+.+.+++...+.... ..-+-+..++.|.+..+-..|+..|-+
T Consensus 292 ~~~nv~~~~-~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~--vcN~evEsLIsd~Nr~IstyAITtLLK-- 366 (898)
T COG5240 292 SEENVGSQF-VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS--VCNKEVESLISDENRTISTYAITTLLK-- 366 (898)
T ss_pred HHhccCHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee--ecChhHHHHhhcccccchHHHHHHHHH--
Confidence 7754 5544 477888889999999999999999999999876553321 223556777888877776666555543
Q ss_pred hhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHH
Q 007863 387 QVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAE 465 (587)
Q Consensus 387 ~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~ 465 (587)
.|.++..+.++..|..++.|-+...+.-++.++..++-.++.+ ...++..+...+ +..-.+.+..++.++..+.+
T Consensus 367 --TGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k--~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~ 442 (898)
T COG5240 367 --TGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK--KLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME 442 (898)
T ss_pred --cCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH--HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 2444445677888888887766666666777777777766544 233444444433 45567888999999998887
Q ss_pred HhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh----HHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHH
Q 007863 466 EFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS----EITCSQLLPVVINASKDRVPNIKFNVAKVLQSL 541 (587)
Q Consensus 466 ~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l 541 (587)
..... .+..+..+..++.|-.+. +.++..++-+++..+. ..|..++...+. =++..||.+|+.+|...
T Consensus 443 ~~p~s--kEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i----LEN~ivRsaAv~aLskf 514 (898)
T COG5240 443 NDPDS--KERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVRHIYNRLI----LENNIVRSAAVQALSKF 514 (898)
T ss_pred hCchH--HHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHHHHHHHHH----HhhhHHHHHHHHHHHHh
Confidence 65433 466777788888776543 4566666666654332 234444444332 25789999999999988
Q ss_pred HhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863 542 IPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 542 ~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~ 581 (587)
+-........+.+...|..+++|.|.+||..|.-++..+.
T Consensus 515 ~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 515 ALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred ccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 7776655566778888889999999999999998887654
No 45
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.46 E-value=7.9e-10 Score=110.26 Aligned_cols=360 Identities=17% Similarity=0.173 Sum_probs=227.3
Q ss_pred hhHHhhhhhhccCCCHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhcccCchhH
Q 007863 143 VSSCGLFHVAYPSAPEA-LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSV 218 (587)
Q Consensus 143 ~~a~~l~~~~~~~~~~~-~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~v 218 (587)
..++.++..+.....+. ....+.+.+...+.++++.||..++..++.+...-.. ......+++.+...+.+++..|
T Consensus 56 ~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~V 135 (503)
T PF10508_consen 56 ELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSV 135 (503)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHH
Confidence 44556666666655544 5788889999999999999999999999888754322 1123567888889999999999
Q ss_pred HHHHHHHHHHHhcccCh--hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCCh
Q 007863 219 RLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNE 293 (587)
Q Consensus 219 r~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~ 293 (587)
...|+.+|..+++.-.. .-+.+...+.+..++...+..+|.-+.+.+..++..... ......+++.+...++++|
T Consensus 136 a~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dD 215 (503)
T PF10508_consen 136 AKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDD 215 (503)
T ss_pred HHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCcc
Confidence 99999999999875332 112334477888888777888898888888887654221 1112358888999999999
Q ss_pred HHHHHHHHHhHHHHHHhhCHHHH--HHhHHHHHhHhc----CCC-cHHH-HHHHHHHHHhhhhhhchHHH---HHhHHHH
Q 007863 294 AEVRIAAAGKVTKICRILNPELA--IQHILPCVKELS----SDS-SQHV-RSALATVIMGMAPILGKDAT---IEQLLPI 362 (587)
Q Consensus 294 ~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~~l~~~~----~d~-~~~v-r~~a~~~l~~l~~~~~~~~~---~~~l~~~ 362 (587)
.-+|..++..+..++..-..-.+ ...+++.+...+ .|+ ...+ -......++.++.. ++... .+.++..
T Consensus 216 iLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~ 294 (503)
T PF10508_consen 216 ILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLER 294 (503)
T ss_pred HHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHH
Confidence 99999999999999883211111 123555555554 344 1111 22333555566554 22222 2456666
Q ss_pred HHHhcCCCChHHHHHHHHHhHHhhhhhchhhHh--------hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh---
Q 007863 363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS--------QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--- 431 (587)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--- 431 (587)
+..++.+.++..+..|+.+++.++......... +.++..+..........+|..++.+++.+....+..
T Consensus 295 l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~ 374 (503)
T PF10508_consen 295 LFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDN 374 (503)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchH
Confidence 677788889999999999999998654322221 223344444445566778888888888875433220
Q ss_pred hH----HH--------HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh-Chhhh--hhchHHHHHhhhcCCccHHHHHHH
Q 007863 432 FF----DD--------KLGALCMQWLKDKVYSIRDAAANNVKRLAEEF-GPDWA--MQHIVPQVLEMINNPHYLYRMTIL 496 (587)
Q Consensus 432 ~~----~~--------~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~~--~~~~~~~l~~~l~~~~~~~r~~a~ 496 (587)
.+ .. .....++..++.+.+++|.++...+..++..- |...+ .+.++..+.+.-.+++...++.=.
T Consensus 375 ~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~ 454 (503)
T PF10508_consen 375 DILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKY 454 (503)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHH
Confidence 00 00 01115566667777777777777777766431 11111 134444444444444544554444
Q ss_pred HHHHHhh
Q 007863 497 QAISLLA 503 (587)
Q Consensus 497 ~~l~~l~ 503 (587)
.++..+.
T Consensus 455 ~ii~~l~ 461 (503)
T PF10508_consen 455 DIIKALA 461 (503)
T ss_pred HHHHHHH
Confidence 4444444
No 46
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.41 E-value=6.3e-11 Score=103.93 Aligned_cols=339 Identities=13% Similarity=0.110 Sum_probs=222.7
Q ss_pred chHHHHHHhc-CCCchHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--H
Q 007863 241 HILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--E 314 (587)
Q Consensus 241 ~l~~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~ 314 (587)
.++|.+.+++ +.........|+.+|.+++.....+. .....+|.|++++.+.+.+||..++.+|+.++..... +
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD 193 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRD 193 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHH
Confidence 4556666666 44555667788999998876433221 1235789999999999999999999999998653211 1
Q ss_pred -HHHHhHHHHHhHhcCCC--cHHHHHHHHHHHHhhhhhhc---hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhh
Q 007863 315 -LAIQHILPCVKELSSDS--SQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (587)
Q Consensus 315 -~~~~~~~~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~ 388 (587)
......+..+..++.++ +-..-+.+...++.++..-. ........+|.+.+++...+++|-..|+++++.+...
T Consensus 194 ~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg 273 (526)
T COG5064 194 YVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG 273 (526)
T ss_pred HHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC
Confidence 11223344444444433 23556667788888876542 2335667899999999999999999999999988754
Q ss_pred hchh---hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 007863 389 IGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKR 462 (587)
Q Consensus 389 ~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 462 (587)
-... .+...+.+.+.+++.+++..+..-+++.++.+.+.-..+ .+.-..++.+..++.++...+|+.||-.+..
T Consensus 274 ~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSN 353 (526)
T COG5064 274 PNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISN 353 (526)
T ss_pred cHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecc
Confidence 2211 112245677888999999888888888888776533211 1112346667777888888999999999988
Q ss_pred HHHHhChh---hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccC-hHHHH-----HhHHHHHHhhcCCCCccHHHH
Q 007863 463 LAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG-SEITC-----SQLLPVVINASKDRVPNIKFN 533 (587)
Q Consensus 463 l~~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~-~~~~~-----~~~l~~l~~~l~d~~~~vR~~ 533 (587)
+....... .+...++|.+..++..-++.+|..|++++.+...... ..... ..++..+..++.-.+-.+-..
T Consensus 354 ITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev 433 (526)
T COG5064 354 ITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEV 433 (526)
T ss_pred cccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhh
Confidence 76422211 1346789999999999999999999999999876332 22222 223344555554333335555
Q ss_pred HHHHHHHHHhhhch------------HHHH--HhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 007863 534 VAKVLQSLIPIVDQ------------SVVE--KSIRPCLVELSEDPDVDVRFFATQALQS 579 (587)
Q Consensus 534 a~~~l~~l~~~~~~------------~~~~--~~i~~~l~~l~~d~~~~Vr~~a~~al~~ 579 (587)
++.++..+.+.-.. ..+. ...+..+..+....+.+|-..|...+..
T Consensus 434 ~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~ 493 (526)
T COG5064 434 ALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEK 493 (526)
T ss_pred hHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHH
Confidence 67777766543211 1121 2356777888777777777666655543
No 47
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.1e-08 Score=103.80 Aligned_cols=456 Identities=15% Similarity=0.102 Sum_probs=272.5
Q ss_pred hhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhh-cCCCCcchhhHHhhhhhhccCC--CHHHHH
Q 007863 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLA-AGEWFTARVSSCGLFHVAYPSA--PEALKT 162 (587)
Q Consensus 86 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~-~~~~~~~r~~a~~l~~~~~~~~--~~~~~~ 162 (587)
.++.-|...++|.|..||-.|++.++.+...++.+-... ++.-+..+. .-+....-..++-+++.++.+. .+....
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~-vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~ 419 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ-VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLE 419 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHH-HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHH
Confidence 444445555689999999999999999999998653333 333333322 2222223335666666665443 345677
Q ss_pred HHHHHHHHhcCC--------CCHHHHHHHHHHHHHHHHHHhhhhhHH---HHH-HHHHHhcccCchhHHHHHHHHHHHHh
Q 007863 163 ELRTIYRQLCQD--------DMPMVRRSAATNLGKFAATVEAAHLKS---EIM-SIFEELTQDDQDSVRLLAVEGCGALG 230 (587)
Q Consensus 163 ~l~~~l~~l~~~--------~~~~vR~~a~~~l~~l~~~~~~~~~~~---~i~-~~l~~l~~d~~~~vr~~a~~~l~~l~ 230 (587)
.++|++...+.= ....||.+|+..+-.++.........+ .+. .++...+-|.+-++|++|..++....
T Consensus 420 dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~V 499 (1133)
T KOG1943|consen 420 DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENV 499 (1133)
T ss_pred HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHh
Confidence 888888776542 346799999999999988776544444 222 34455567888899999888776654
Q ss_pred cccCh------------------------------hhhhhchHHHHHHh----cCCCchHHHHHHHHHHHHHHHHhCCCC
Q 007863 231 KLLEP------------------------------QDCVAHILPVIVNF----SQDKSWRVRYMVANQLYELCEAVGPEP 276 (587)
Q Consensus 231 ~~~~~------------------------------~~~~~~l~~~l~~~----~~d~~~~vR~~a~~~l~~l~~~~~~~~ 276 (587)
...+. ..+....-|++..+ +.+-+..+|..++.+|.++...-++.
T Consensus 500 GR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~- 578 (1133)
T KOG1943|consen 500 GRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKY- 578 (1133)
T ss_pred ccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHh-
Confidence 33221 01111223333333 34557899999999999987654432
Q ss_pred cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH-----H-------HHhHHHHHhHhcCCC--cHHHHHHHHHH
Q 007863 277 TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL-----A-------IQHILPCVKELSSDS--SQHVRSALATV 342 (587)
Q Consensus 277 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-----~-------~~~~~~~l~~~~~d~--~~~vr~~a~~~ 342 (587)
..+..+|.+.......+...|..+..+.+.+...+..-. . ...+++.+...--+. ..-.|.+.+..
T Consensus 579 ~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~ 658 (1133)
T KOG1943|consen 579 LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKF 658 (1133)
T ss_pred hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHH
Confidence 234456666666666778888888888777755432110 0 011222222111111 24456666665
Q ss_pred HHhhhhhh---chHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch--hhHhhhhHHHHHHHhcCC-CcHHHHH
Q 007863 343 IMGMAPIL---GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDR-HWRVRLA 416 (587)
Q Consensus 343 l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~~~~~l~~~~~~~-~~~vr~~ 416 (587)
+..+...- -.+...+.....+.+.+.+++ .+|.++.++++.++..+-. +.....++..+..-+.+. +.++|..
T Consensus 659 Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g 737 (1133)
T KOG1943|consen 659 IEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRG 737 (1133)
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHH
Confidence 55543211 112333334445555565666 8999999999999876522 111122444444444444 6778887
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHHhChh-------hhhhchHHHHHhhhcCC-
Q 007863 417 IIEYIPLLASQLGVGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPD-------WAMQHIVPQVLEMINNP- 487 (587)
Q Consensus 417 ~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~-------~~~~~~~~~l~~~l~~~- 487 (587)
..-.++.+....=.-...+.+...++... .|..++-|...+.++..++...+.. .+.+.++..+.+...|.
T Consensus 738 ~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~r 817 (1133)
T KOG1943|consen 738 LILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSR 817 (1133)
T ss_pred HHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccC
Confidence 77766665532211112233444444333 3447788999999999998877722 24455666666655554
Q ss_pred ---ccHHHHHHHHHHHHhhcccCh-----HHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhh
Q 007863 488 ---HYLYRMTILQAISLLAPVMGS-----EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 488 ---~~~~r~~a~~~l~~l~~~~~~-----~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~ 544 (587)
...+|.+|+.++..+...... +.....++..++.-..++....|..++.++.++...
T Consensus 818 GDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 818 GDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred ccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence 356999999999998765442 223444555555556666777788888888887655
No 48
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.37 E-value=4.8e-09 Score=98.74 Aligned_cols=294 Identities=11% Similarity=0.098 Sum_probs=202.9
Q ss_pred hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC
Q 007863 197 AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP 276 (587)
Q Consensus 197 ~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~ 276 (587)
..+..++.|++...++|+-+.|...+++.+..++..--..+.....+..+..+++......|.+|++.|..++...+...
T Consensus 259 ~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv 338 (898)
T COG5240 259 SQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV 338 (898)
T ss_pred hHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence 56778899999999999989999999998888776543333566778888899999999999999999999998765432
Q ss_pred cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHH
Q 007863 277 TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI 356 (587)
Q Consensus 277 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 356 (587)
. ..-+-+-.++.|.+..+...|+. .+.+. |.+.-.+.++..+..+..|-+...+.-++.++..++-.|+.+.
T Consensus 339 ~--vcN~evEsLIsd~Nr~IstyAIT---tLLKT-Gt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~-- 410 (898)
T COG5240 339 S--VCNKEVESLISDENRTISTYAIT---TLLKT-GTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK-- 410 (898)
T ss_pred e--ecChhHHHHhhcccccchHHHHH---HHHHc-CchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--
Confidence 1 12344566777877555555544 44443 4444457778888888888888888888888888887776432
Q ss_pred HhHHHHHHHhc-CCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH-H
Q 007863 357 EQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-D 434 (587)
Q Consensus 357 ~~l~~~l~~~l-~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~-~ 434 (587)
..++..+...| +...-+.+..+..++..+.+..... .+..+..++..++|..+. +-+++.++.+++..+...- .
T Consensus 411 ~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s--kEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~ 486 (898)
T COG5240 411 LSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS--KERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPG 486 (898)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH--HHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcc
Confidence 12334444333 3456778888888888888775432 356788888888886543 2344555555554321111 1
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhh
Q 007863 435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLA 503 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~ 503 (587)
.++..++.+.+ =++.-||.+|+.+|..+.-.....+..+.+...+...++|.+..+|..|..++..+-
T Consensus 487 ~yvrhIyNR~i-LEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 487 KYVRHIYNRLI-LENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hHHHHHHHHHH-HhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 22333333333 346679999999999887655444444667777888899999999999998887764
No 49
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.6e-08 Score=99.19 Aligned_cols=244 Identities=10% Similarity=0.095 Sum_probs=141.6
Q ss_pred HhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHh
Q 007863 287 RLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL 366 (587)
Q Consensus 287 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 366 (587)
+++..++.++|..+++.|..+...-. .....--..+..+++|++..+|..|.+..-.+... .....++.-+..+
T Consensus 320 kFL~n~d~NirYvaLn~L~r~V~~d~--~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~----~Nv~~mv~eLl~f 393 (866)
T KOG1062|consen 320 KFLLNRDNNIRYVALNMLLRVVQQDP--TAVQRHRSTILECLKDPDVSIKRRALELSYALVNE----SNVRVMVKELLEF 393 (866)
T ss_pred HHhcCCccceeeeehhhHHhhhcCCc--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc----ccHHHHHHHHHHH
Confidence 33444555667777666666655311 11233345677888999999999999887777633 2233444556666
Q ss_pred cCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-ChhhHHHHHHHHHHHHc
Q 007863 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGFFDDKLGALCMQWL 445 (587)
Q Consensus 367 l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~-~~~~~~~~l~~~l~~~l 445 (587)
|...+++.+...+..+..+++.+.++.. ..+..+...+...-.-|+..+...+-.+.... +... ......+.....
T Consensus 394 L~~~d~~~k~~~as~I~~laEkfaP~k~--W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~-~y~~~rLy~a~~ 470 (866)
T KOG1062|consen 394 LESSDEDFKADIASKIAELAEKFAPDKR--WHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELH-EYAVLRLYLALS 470 (866)
T ss_pred HHhccHHHHHHHHHHHHHHHHhcCCcch--hHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchh-hHHHHHHHHHHh
Confidence 6666889999999999999988877642 45556555555443334444444333333222 2111 111111111111
Q ss_pred C-----CCchHHHHHHHHHHHHHHHHhCh----h----hhhhchHHHHHhhhcC--CccHHHHHHHHHHHHhhcccChHH
Q 007863 446 K-----DKVYSIRDAAANNVKRLAEEFGP----D----WAMQHIVPQVLEMINN--PHYLYRMTILQAISLLAPVMGSEI 510 (587)
Q Consensus 446 ~-----d~~~~vr~~a~~~l~~l~~~~~~----~----~~~~~~~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~~~~~ 510 (587)
. -........|.-++|+....+-. + .-.+.++..+.+.+.. .+..+|.-++.++..+...+...
T Consensus 471 ~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~- 549 (866)
T KOG1062|consen 471 EDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS- 549 (866)
T ss_pred hhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc-
Confidence 1 22334566777888877643211 0 0124456656555432 34778888999998888755443
Q ss_pred HHHhHHHHHHhhcCCCCccHHHHHHHHHHHH
Q 007863 511 TCSQLLPVVINASKDRVPNIKFNVAKVLQSL 541 (587)
Q Consensus 511 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l 541 (587)
.+++-..+..+..+-+..+++.+.+.=..+
T Consensus 550 -~~ri~~lI~~~~~s~~~elQQRa~E~~~l~ 579 (866)
T KOG1062|consen 550 -SERIKQLISSYKSSLDTELQQRAVEYNALF 579 (866)
T ss_pred -HHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 455666666667777888888887754433
No 50
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=7.1e-09 Score=101.68 Aligned_cols=434 Identities=12% Similarity=0.096 Sum_probs=261.4
Q ss_pred hhHHHHHHhhcCC-CCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 007863 125 HFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEI 203 (587)
Q Consensus 125 ~ll~~~~~l~~~~-~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i 203 (587)
.++-++.+..+.| +........-.++.+...++++....+.|-+..++++.++.||+.|+.+...+.... +...+.+
T Consensus 103 dvllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~--P~l~e~f 180 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV--PDLVEHF 180 (866)
T ss_pred HHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC--chHHHHh
Confidence 3444555544443 222222222334444556678899999999999999999999999999999888765 4577788
Q ss_pred HHHHHHhcccCchhHHHHHHHHHHHHhcccCh-----hhhhhchHHHHHHhcCC-----------CchHHHHHHHHHHHH
Q 007863 204 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-----QDCVAHILPVIVNFSQD-----------KSWRVRYMVANQLYE 267 (587)
Q Consensus 204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~~~~d-----------~~~~vR~~a~~~l~~ 267 (587)
++-..+++.+.+..|-..++..+..+++.-++ ....+.++..+.++... .+|..+...++.|+-
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLri 260 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRI 260 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHH
Confidence 88888999999998888888888887776443 11233344444444321 366777777776665
Q ss_pred HHHHhCCCCcccchHHHHHHhcC--CChH----HHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHH
Q 007863 268 LCEAVGPEPTRSDVVPAYVRLLR--DNEA----EVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALAT 341 (587)
Q Consensus 268 l~~~~~~~~~~~~l~~~l~~~l~--d~~~----~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~ 341 (587)
+++. .....+.+-.++-+... |.+. .|-..++.++..+- .........+..+-+++.+++-.+|..++.
T Consensus 261 LGq~--d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~---~~~~LrvlainiLgkFL~n~d~NirYvaLn 335 (866)
T KOG1062|consen 261 LGQN--DADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR---SNSGLRVLAINILGKFLLNRDNNIRYVALN 335 (866)
T ss_pred hcCC--CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc---CCchHHHHHHHHHHHHhcCCccceeeeehh
Confidence 5432 11111222333333332 2222 22333333333321 122222334555666666667777777777
Q ss_pred HHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHH
Q 007863 342 VIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 421 (587)
Q Consensus 342 ~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l 421 (587)
.|..+...-+ ...+.=-..+..+++|+++.+|..|+.-.-.+...-.. ..++..+...+...+...|..+..-+
T Consensus 336 ~L~r~V~~d~--~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv----~~mv~eLl~fL~~~d~~~k~~~as~I 409 (866)
T KOG1062|consen 336 MLLRVVQQDP--TAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNV----RVMVKELLEFLESSDEDFKADIASKI 409 (866)
T ss_pred hHHhhhcCCc--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccH----HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 7766654322 22344456788999999999999999888877654322 34566666666667888888888888
Q ss_pred HHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh-Chhh--hhhchHHHHHhh--hcCCccHHHHHHH
Q 007863 422 PLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF-GPDW--AMQHIVPQVLEM--INNPHYLYRMTIL 496 (587)
Q Consensus 422 ~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~--~~~~~~~~l~~~--l~~~~~~~r~~a~ 496 (587)
..+++.+.++ ....+..+++.+...-.-|+..+...+-.++..- +... ....+...+... +.-.+...-+.+.
T Consensus 410 ~~laEkfaP~--k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~ 487 (866)
T KOG1062|consen 410 AELAEKFAPD--KRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVAS 487 (866)
T ss_pred HHHHHhcCCc--chhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 8888887664 3344555555555544456666666665555432 2211 011111111111 1112344678899
Q ss_pred HHHHHhhcccCh--------HHHHHhHHHHHHhhcCC--CCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCC
Q 007863 497 QAISLLAPVMGS--------EITCSQLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPD 566 (587)
Q Consensus 497 ~~l~~l~~~~~~--------~~~~~~~l~~l~~~l~d--~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~ 566 (587)
|+||..+..+-. ....+.++..+.+.+.. .+..+|..++-++..+...+... .+.+-..+..+...-+
T Consensus 488 W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~--~~ri~~lI~~~~~s~~ 565 (866)
T KOG1062|consen 488 WCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS--SERIKQLISSYKSSLD 565 (866)
T ss_pred HHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhccccc
Confidence 999998852211 11234555555555443 34788999999999998776543 3456666666666777
Q ss_pred ccHHHHHHH
Q 007863 567 VDVRFFATQ 575 (587)
Q Consensus 567 ~~Vr~~a~~ 575 (587)
-+.+++|.+
T Consensus 566 ~elQQRa~E 574 (866)
T KOG1062|consen 566 TELQQRAVE 574 (866)
T ss_pred HHHHHHHHH
Confidence 777777765
No 51
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.36 E-value=6.2e-08 Score=101.54 Aligned_cols=490 Identities=15% Similarity=0.132 Sum_probs=279.0
Q ss_pred HHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHH
Q 007863 90 PLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYR 169 (587)
Q Consensus 90 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~ 169 (587)
.|...+..+...+|-.|++++..+.+.-+.--..+.+..-+..-..|....+|.+|..++|...-.- ++....+...+.
T Consensus 820 ~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~-~e~~~qyY~~i~ 898 (1692)
T KOG1020|consen 820 LILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI-PELIFQYYDQII 898 (1692)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc-HHHHHHHHHHHH
Confidence 3444556788999999999999998864332223334444444455667889999999998764333 456667777788
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChh-hhhhc-------
Q 007863 170 QLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ-DCVAH------- 241 (587)
Q Consensus 170 ~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~------- 241 (587)
....|+...||+.+++.+..++...+.-.....+..-+..-.+|+...|.+.+.+.+-.++=.-.++ ...+.
T Consensus 899 erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~ 978 (1692)
T KOG1020|consen 899 ERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISL 978 (1692)
T ss_pred hhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHH
Confidence 8889999999999999999999877653333444444444567877779999999888875321111 11111
Q ss_pred hHHHHH---HhcCCCchHHHHHHHHHHHH--HHHHhCC--CCcccchHHHHHHhc------------CCChHHHHH-HHH
Q 007863 242 ILPVIV---NFSQDKSWRVRYMVANQLYE--LCEAVGP--EPTRSDVVPAYVRLL------------RDNEAEVRI-AAA 301 (587)
Q Consensus 242 l~~~l~---~~~~d~~~~vR~~a~~~l~~--l~~~~~~--~~~~~~l~~~l~~~l------------~d~~~~vr~-~a~ 301 (587)
....+. .+..+..+..=...+..-.. ......+ .......+.++...+ .+.+.++|. +++
T Consensus 979 ~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~l 1058 (1692)
T KOG1020|consen 979 EVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYL 1058 (1692)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHH
Confidence 111111 11112111111111000000 0000000 000112233333222 122334444 445
Q ss_pred HhHHHHHHhhCHH---HHHHhHHHHHhHhcCC-CcHHHHHHHHHHHHhhhhhhc--hHHHHHhHHHHHHHhcCCCChHHH
Q 007863 302 GKVTKICRILNPE---LAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLKDEFPDVR 375 (587)
Q Consensus 302 ~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr 375 (587)
..|..+++..+.- .+...+.|++..-++. ....+-...+..+..+...+. .+.+...+-..+.+.+-...-.+.
T Consensus 1059 stL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V 1138 (1692)
T KOG1020|consen 1059 STLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATV 1138 (1692)
T ss_pred HHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHH
Confidence 5566666543221 3334456666543221 223444555555555444332 344555555666666655556666
Q ss_pred HHHHHHhHHhhhhhchh-hHhhhhHHHHHHHh-------cCC----CcHHHHHHHHHHHHHHHhhC--------h-----
Q 007863 376 LNIISKLDQVNQVIGID-LLSQSLLPAIVELA-------EDR----HWRVRLAIIEYIPLLASQLG--------V----- 430 (587)
Q Consensus 376 ~~a~~~l~~i~~~~~~~-~~~~~~~~~l~~~~-------~~~----~~~vr~~~~~~l~~l~~~~~--------~----- 430 (587)
..+..+++.+....... .....+...+...+ .+. +...-...+-.+|.+++.+. .
T Consensus 1139 ~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~ 1218 (1692)
T KOG1020|consen 1139 VEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQE 1218 (1692)
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhh
Confidence 77778888877653222 11122222222221 111 11222334556777777541 1
Q ss_pred -hhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCcc-HH-HHHHHHHHHHhhcc--
Q 007863 431 -GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHY-LY-RMTILQAISLLAPV-- 505 (587)
Q Consensus 431 -~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-~~-r~~a~~~l~~l~~~-- 505 (587)
+...+.++..+.-+.++.+..+|..|+.++|.++-.-..-++...+...+.+.+.+.+. .. +..++..+..+...
T Consensus 1219 ~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee 1298 (1692)
T KOG1020|consen 1219 GETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEE 1298 (1692)
T ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 13346677777778889999999999999999987544444445555555555555432 22 44444433333210
Q ss_pred ----------------------------cChH----HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHh
Q 007863 506 ----------------------------MGSE----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKS 553 (587)
Q Consensus 506 ----------------------------~~~~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ 553 (587)
.+.. -.....++.++..+-|.+..+|..|++.+.-+...-=-.+ ..
T Consensus 1299 ~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVhP--~~ 1376 (1692)
T KOG1020|consen 1299 KKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVHP--VH 1376 (1692)
T ss_pred HHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCCc--cc
Confidence 0100 1456677888888889999999999999988865421112 26
Q ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863 554 IRPCLVELSEDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 554 i~~~l~~l~~d~~~~Vr~~a~~al~~l~~ 582 (587)
.+|.|..+.+|+.+..|..|-.-+..+.+
T Consensus 1377 cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~ 1405 (1692)
T KOG1020|consen 1377 CVPTLIALETDPSQAIRHVADELLKEIDE 1405 (1692)
T ss_pred hhhhheeecCChHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999988887755
No 52
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=6.4e-07 Score=92.36 Aligned_cols=344 Identities=13% Similarity=0.129 Sum_probs=223.2
Q ss_pred hhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC-----------CCcccchHHHHHHhcCCC------hHHHHHHHH
Q 007863 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-----------EPTRSDVVPAYVRLLRDN------EAEVRIAAA 301 (587)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-----------~~~~~~l~~~l~~~l~d~------~~~vr~~a~ 301 (587)
...+.|.+...+.... ..|...+..|..++..-.+ ......++|.+.+.-... ....|...+
T Consensus 516 F~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L 594 (1176)
T KOG1248|consen 516 FTDLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVL 594 (1176)
T ss_pred HHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHH
Confidence 3445666655555443 8888888888887764210 011235777777665432 234444444
Q ss_pred HhHH-HHHHhhCHHHHHHhHHHHHhHhcCCCcHHH----HHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHH
Q 007863 302 GKVT-KICRILNPELAIQHILPCVKELSSDSSQHV----RSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRL 376 (587)
Q Consensus 302 ~~l~-~l~~~~~~~~~~~~~~~~l~~~~~d~~~~v----r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~ 376 (587)
..+. ......+. .....+...+.....+.+..+ +.+.+..+..++.+.....+. .+..+.-...+..+..+|.
T Consensus 595 ~~i~~~~~~~t~~-dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs-~l~~v~~~~e~~~~~~vQk 672 (1176)
T KOG1248|consen 595 EIIRVDYFTVTPT-DVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVS-KLFTVDPEFENSSSTKVQK 672 (1176)
T ss_pred HHHHHHHhhcccH-HHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHH-HHHHhhHHhhccccHHHHH
Confidence 4444 23332222 233445555556666654433 344444455555444433332 2234444455566889999
Q ss_pred HHHHHhHHhhhhhchh----hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHcCCCch
Q 007863 377 NIISKLDQVNQVIGID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVY 450 (587)
Q Consensus 377 ~a~~~l~~i~~~~~~~----~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~ 450 (587)
.+...|..++..-..+ .....+...+.+-+++.....|...+.++..+.+..+.+. +....+|-++-.+++.+.
T Consensus 673 K~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~ 752 (1176)
T KOG1248|consen 673 KAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNV 752 (1176)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccH
Confidence 9999999988762222 2234455555555666777889999999999998887443 234444544445588899
Q ss_pred HHHHHHHHHHHHHH--H---HhChhh---hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcc---cChHHHHHhHHHHH
Q 007863 451 SIRDAAANNVKRLA--E---EFGPDW---AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV---MGSEITCSQLLPVV 519 (587)
Q Consensus 451 ~vr~~a~~~l~~l~--~---~~~~~~---~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~---~~~~~~~~~~l~~l 519 (587)
.-|..|..+|-.++ . ..|.+. ..+.+++.+...+......++...+-++..+... ...+.+.+.++..+
T Consensus 753 ~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V 832 (1176)
T KOG1248|consen 753 KARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMV 832 (1176)
T ss_pred HHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 99999999988887 2 234332 3355666665554444445555546666666543 33455788999999
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHhhhchH---HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhh
Q 007863 520 INASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 585 (587)
Q Consensus 520 ~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~ 585 (587)
..++...++.+|..|+..+..++..++.. .+.+.++|.+..+..|....+|..+...+..+...+|
T Consensus 833 ~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg 901 (1176)
T KOG1248|consen 833 CLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFG 901 (1176)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999988875 5566789999999999999999999999999988776
No 53
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=99.35 E-value=3.5e-11 Score=116.38 Aligned_cols=255 Identities=17% Similarity=0.206 Sum_probs=206.1
Q ss_pred CCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcC
Q 007863 329 SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 408 (587)
Q Consensus 329 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~ 408 (587)
.-.+..-|......+......++.+.....++|.+...+.-.+ --...+.-+-.+...+...++...++|.+.+++..
T Consensus 264 ~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~ 341 (690)
T KOG1243|consen 264 RLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKS 341 (690)
T ss_pred ccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcC
Confidence 3345556666666666666666666667777777776654333 11112222333344444455677899999999999
Q ss_pred CCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCc
Q 007863 409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPH 488 (587)
Q Consensus 409 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 488 (587)
++..+|...++.+..+...+..+.+.+.+.|.+...+.|.++.+|+.++.++..++..++.+.....++..+.....|.+
T Consensus 342 ~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~ 421 (690)
T KOG1243|consen 342 PDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEH 421 (690)
T ss_pred cchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999988666788888888878889
Q ss_pred cHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCcc
Q 007863 489 YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVD 568 (587)
Q Consensus 489 ~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~ 568 (587)
..+|....-|++.++..+........+...+.+.+.|+.+.-|.+++.++....+.++.......++|.+.-+.-|++..
T Consensus 422 ~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~ 501 (690)
T KOG1243|consen 422 GGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKT 501 (690)
T ss_pred CcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccc
Confidence 99999999999999988765542233344566679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 007863 569 VRFFATQALQSKDQVMM 585 (587)
Q Consensus 569 Vr~~a~~al~~l~~~~~ 585 (587)
||..|.+++...-+.+.
T Consensus 502 vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 502 VRDTAEKAIRQFLEKLE 518 (690)
T ss_pred hhhHHHHHHHHHHhhhh
Confidence 99999999988776654
No 54
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.35 E-value=9.2e-10 Score=105.42 Aligned_cols=248 Identities=24% Similarity=0.310 Sum_probs=151.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhch
Q 007863 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHI 242 (587)
Q Consensus 163 ~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 242 (587)
...+.+...+.++++.+|..+...++.+.. ...+|.+..++.|.++.+|..++.+++.+.. +..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a 106 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA 106 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence 455666777888889999999988776543 3467788888999999999999998876643 344
Q ss_pred HHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCCh------------HHHHHHHHHhHHHHHH
Q 007863 243 LPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE------------AEVRIAAAGKVTKICR 309 (587)
Q Consensus 243 ~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~------------~~vr~~a~~~l~~l~~ 309 (587)
.+.+..+++ |.++.||..++..|+.+... ..+..+...++|.. +.+|..+...++.+..
T Consensus 107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~ 178 (335)
T COG1413 107 VPPLVELLENDENEGVRAAAARALGKLGDE--------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD 178 (335)
T ss_pred HHHHHHHHHcCCcHhHHHHHHHHHHhcCch--------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence 555555555 79999999999998876532 23455555555544 3456666666665543
Q ss_pred hhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhh
Q 007863 310 ILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (587)
Q Consensus 310 ~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~ 389 (587)
+...+.+...+.|....||..++.+++.+.... ..+.+.+...+.|.+..+|..++..++.+..
T Consensus 179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~-- 242 (335)
T COG1413 179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD-- 242 (335)
T ss_pred --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence 334455555666666666666666666665321 2344556666666666666666666665542
Q ss_pred chhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 007863 390 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA 464 (587)
Q Consensus 390 ~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 464 (587)
+...+.+...+.+.+|.++.......+. .+ ...-...+...+.|..+.+|..+...++.+.
T Consensus 243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 243 ------EEAVDALAKALEDEDVILALLAAAALGA----LD----LAEAALPLLLLLIDEANAVRLEAALALGQIG 303 (335)
T ss_pred ------chhHHHHHHHHhccchHHHHHHHHHhcc----cC----chhhHHHHHHHhhcchhhHHHHHHHHHHhhc
Confidence 2344444455555555555444433330 00 1112333444455566666666666655544
No 55
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.34 E-value=1e-10 Score=105.09 Aligned_cols=187 Identities=18% Similarity=0.244 Sum_probs=135.0
Q ss_pred hhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC----hhhHHHH---HHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCh
Q 007863 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGFFDDK---LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 469 (587)
Q Consensus 397 ~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~----~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 469 (587)
.+.+.+.....+.+|..|..++..+..+..... .+.+.+. +.+.+...+.|....|-..|+.+++.++..+|.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 344444444567899999999999988877551 1222222 335666778888889999999999999999988
Q ss_pred hh--hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhH-HHHHHhhcCCCCccHHHHHHHHHHHHHhhhc
Q 007863 470 DW--AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQL-LPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 470 ~~--~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~-l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~ 546 (587)
.+ +.+.++|.+++.+.+++..+|..|..++..+...++. ...+ .+.+....++.++.+|..++..+..+....+
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~---~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY---SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 74 4588999999999999999999999999999998771 2344 7788888999999999999999999998887
Q ss_pred --hH-----HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863 547 --QS-----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 586 (587)
Q Consensus 547 --~~-----~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~~ 586 (587)
.. .....+.+.+.++++|++++||..|.+++..+.+..|.
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 11 23367899999999999999999999999999988764
No 56
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.34 E-value=5.1e-10 Score=107.19 Aligned_cols=278 Identities=23% Similarity=0.261 Sum_probs=195.9
Q ss_pred chHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhH
Q 007863 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHI 320 (587)
Q Consensus 241 ~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 320 (587)
...+.+.+.+.++++.+|..++..++.+. ....+|.+..++.|.++.||..++.+|+.+.. +..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~--------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a 106 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG--------SEEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA 106 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc--------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence 45666677777888888888888866654 24578888888888888888888887777743 334
Q ss_pred HHHHhHhcC-CCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCC------------hHHHHHHHHHhHHhhh
Q 007863 321 LPCVKELSS-DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF------------PDVRLNIISKLDQVNQ 387 (587)
Q Consensus 321 ~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~------------~~vr~~a~~~l~~i~~ 387 (587)
.+.+.+++. |.++.||..+..+++.+...- .++.+...+.|.. ..+|..+...++.+..
T Consensus 107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~--------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~ 178 (335)
T COG1413 107 VPPLVELLENDENEGVRAAAARALGKLGDER--------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD 178 (335)
T ss_pred HHHHHHHHHcCCcHhHHHHHHHHHHhcCchh--------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence 455555555 788888888888888876321 1233444444433 2578888888877653
Q ss_pred hhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Q 007863 388 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 467 (587)
Q Consensus 388 ~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 467 (587)
+...+.+...+.+....+|..+...++.+.... ..+.+.+...+.|.++.||..++..++.+..
T Consensus 179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~-- 242 (335)
T COG1413 179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD-- 242 (335)
T ss_pred --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence 356777788888888899999998888776532 3567788888999999999999998887542
Q ss_pred ChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch
Q 007863 468 GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (587)
Q Consensus 468 ~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~ 547 (587)
....+.+...+.+.++.++..+..+..... .....+.+...+.|....+|..+..+++.+...
T Consensus 243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~--- 305 (335)
T COG1413 243 ------EEAVDALAKALEDEDVILALLAAAALGALD--------LAEAALPLLLLLIDEANAVRLEAALALGQIGQE--- 305 (335)
T ss_pred ------chhHHHHHHHHhccchHHHHHHHHHhcccC--------chhhHHHHHHHhhcchhhHHHHHHHHHHhhccc---
Confidence 345666667777788877777776665221 123444566667888899999999999888654
Q ss_pred HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007863 548 SVVEKSIRPCLVELSEDPDVDVRFFATQALQSK 580 (587)
Q Consensus 548 ~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l 580 (587)
.....+.....+.+..+|..+...+..+
T Consensus 306 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 333 (335)
T COG1413 306 -----KAVAALLLALEDGDADVRKAALILLEGI 333 (335)
T ss_pred -----chHHHHHHHhcCCchhhHHHHHHHHHhh
Confidence 2334445556777778887777766543
No 57
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.32 E-value=5.7e-10 Score=106.41 Aligned_cols=207 Identities=14% Similarity=0.056 Sum_probs=93.6
Q ss_pred HHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHH
Q 007863 321 LPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 400 (587)
Q Consensus 321 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~ 400 (587)
+..+...+.|.+..||.+++++|+.+. .+...+.+..++++.++.||..++.+++... ..-.+
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~--------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~---------~~~~~ 150 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG--------GRQAEPWLEPLLAASEPPGRAIGLAALGAHR---------HDPGP 150 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC--------chHHHHHHHHHhcCCChHHHHHHHHHHHhhc---------cChHH
Confidence 344444455555555555555555443 1223344445555555555555554444321 11223
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHH
Q 007863 401 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480 (587)
Q Consensus 401 ~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l 480 (587)
.+..+++|+++.||..++..++.+... ...|.+...+.|.++.||..|+..++.+. . ....+.+
T Consensus 151 ~L~~~L~d~d~~Vra~A~raLG~l~~~--------~a~~~L~~al~d~~~~VR~aA~~al~~lG----~----~~A~~~l 214 (410)
T TIGR02270 151 ALEAALTHEDALVRAAALRALGELPRR--------LSESTLRLYLRDSDPEVRFAALEAGLLAG----S----RLAWGVC 214 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccc--------cchHHHHHHHcCCCHHHHHHHHHHHHHcC----C----HhHHHHH
Confidence 334444555555555555555544421 12333344455556666666555554432 1 1122333
Q ss_pred HhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHH
Q 007863 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE 560 (587)
Q Consensus 481 ~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~ 560 (587)
.....++....+..+...+... +. +..++.+..+++|+. +|..++.+++.+... ..++.|.+
T Consensus 215 ~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p--------~av~~L~~ 276 (410)
T TIGR02270 215 RRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWLRELLQAAA--TRREALRAVGLVGDV--------EAAPWCLE 276 (410)
T ss_pred HHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHHHHHhcChh--hHHHHHHHHHHcCCc--------chHHHHHH
Confidence 3333333333333333333222 11 244445555555533 555666665555332 34445555
Q ss_pred hcCCCCccHHHHHHHHHHHH
Q 007863 561 LSEDPDVDVRFFATQALQSK 580 (587)
Q Consensus 561 l~~d~~~~Vr~~a~~al~~l 580 (587)
.+.|+. ++..|.+++..|
T Consensus 277 ~l~d~~--~aR~A~eA~~~I 294 (410)
T TIGR02270 277 AMREPP--WARLAGEAFSLI 294 (410)
T ss_pred HhcCcH--HHHHHHHHHHHh
Confidence 444433 555555555544
No 58
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=7.8e-07 Score=86.61 Aligned_cols=401 Identities=14% Similarity=0.132 Sum_probs=235.3
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhccc
Q 007863 154 PSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL 233 (587)
Q Consensus 154 ~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~ 233 (587)
...++.....+-+-+..++++.-|.+|+.|+-.+-.+....+ +....-+|-+.+-+.|+++.|..+|+..+-.++..-
T Consensus 135 ~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP--eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKn 212 (877)
T KOG1059|consen 135 CIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP--EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKN 212 (877)
T ss_pred cccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh--HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhC
Confidence 334455666777777888899999999999999888776553 344456777888899999999999999999999887
Q ss_pred ChhhhhhchHHHHHHhcC--CCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCCh-HHHHHHHHHhHHHHHHh
Q 007863 234 EPQDCVAHILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE-AEVRIAAAGKVTKICRI 310 (587)
Q Consensus 234 ~~~~~~~~l~~~l~~~~~--d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~ 310 (587)
|+. .-.+-|.+.+++. +.||.. ...++.++.+... .+. ....+++.+..+++... ..+-..|++++....-.
T Consensus 213 Pkn--yL~LAP~ffkllttSsNNWmL-IKiiKLF~aLtpl-EPR-LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s 287 (877)
T KOG1059|consen 213 PQN--YLQLAPLFYKLLVTSSNNWVL-IKLLKLFAALTPL-EPR-LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMS 287 (877)
T ss_pred Ccc--cccccHHHHHHHhccCCCeeh-HHHHHHHhhcccc-Cch-hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhc
Confidence 653 2335666666554 446643 4445666655432 111 13468888888877654 33445555554433222
Q ss_pred hC--H-HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhh
Q 007863 311 LN--P-ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (587)
Q Consensus 311 ~~--~-~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~ 387 (587)
.| . .....--+.-+..++.|.++..|.-.+-+++.+++.-+. ..+.-...+.++|.|.++.+|..|+.-+..+..
T Consensus 288 ~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~--~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 288 SGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK--AVQAHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred cCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH--HHHHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 22 1 122233455667788999999999999999999865432 234445788999999999999999988887765
Q ss_pred hhchhhHhhhhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHcCC-----------------
Q 007863 388 VIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLKD----------------- 447 (587)
Q Consensus 388 ~~~~~~~~~~~~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d----------------- 447 (587)
. +.+ ..++..+...+. .+....|...+..+-.++..-.-..+ .+.++.++..+.+=
T Consensus 366 k---kNl-~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~ 441 (877)
T KOG1059|consen 366 K---KNL-MEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVA 441 (877)
T ss_pred h---hhH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHh
Confidence 4 222 123333332222 22235555555444444432221111 12333333333221
Q ss_pred -CchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHh--hh-cCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhc
Q 007863 448 -KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE--MI-NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINAS 523 (587)
Q Consensus 448 -~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~--~l-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l 523 (587)
..+.+|..++..+..+... .+.. .. +..-..+-.+|+|++|.+++.+... ..++..+++--
T Consensus 442 iRV~~iR~fsV~~m~~Ll~~------------~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~---~~~leamlrpr 506 (877)
T KOG1059|consen 442 IRVPSIRPFSVSQMSALLDD------------PLLAGSAQINSQLCEVLYAAAWILGEYSEFVENP---NDTLEAMLRPR 506 (877)
T ss_pred eechhhhHhHHHHHHHHHhc------------hhhccchhhccchhHHHHHHHHHHHHHHHHhhCH---HHHHHHHhcCc
Confidence 2233333333333332210 0000 01 1112456778999999998866443 33444444433
Q ss_pred CCC-CccHHHHHHHHHH----HHHhhhchH-------HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863 524 KDR-VPNIKFNVAKVLQ----SLIPIVDQS-------VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 524 ~d~-~~~vR~~a~~~l~----~l~~~~~~~-------~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~ 582 (587)
.+- ...+....+..+. .++....+. ...+.++..|.++....+-+|+.+|..++.-+..
T Consensus 507 ~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~li~~ 577 (877)
T KOG1059|consen 507 SDLLPGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLELIRL 577 (877)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHHHH
Confidence 322 2344444444443 344333221 3335566667777888899999998888876654
No 59
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=5.2e-09 Score=100.21 Aligned_cols=278 Identities=15% Similarity=0.159 Sum_probs=183.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCC-CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcC
Q 007863 251 QDKSWRVRYMVANQLYELCEAVGP-EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS 329 (587)
Q Consensus 251 ~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 329 (587)
++.+...|..+......++..-.. ......+..-+..+.+|.+..||.+|++++-.+++.+.- .........+.+.
T Consensus 168 ~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL---~~~~Y~~A~~~ls 244 (823)
T KOG2259|consen 168 SISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKL---SKACYSRAVKHLS 244 (823)
T ss_pred hcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccc---cHHHHHHHHHHhc
Confidence 344445555555444443322111 111234555577888999999999999999999883322 2345566778889
Q ss_pred CCcHHHHHHHHHHHHhhhhhhc--------hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHH
Q 007863 330 DSSQHVRSALATVIMGMAPILG--------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401 (587)
Q Consensus 330 d~~~~vr~~a~~~l~~l~~~~~--------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~ 401 (587)
|.+..||.+|++.+..++...+ .....+..+.-+...++|.+..||..|++.++.+-..- .+ .+...
T Consensus 245 D~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS-ee----~i~QT 319 (823)
T KOG2259|consen 245 DDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS-EE----IIQQT 319 (823)
T ss_pred chHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH-HH----HHHHH
Confidence 9999999999999888877652 11233455666778899999999999999999886441 12 22223
Q ss_pred HHH-Hhc-CCCcHHHHHHHHHHHH---HHH--hhC----hhhHH---HHH-----HHHHHHHcCCCchHHHHHHHHHHHH
Q 007863 402 IVE-LAE-DRHWRVRLAIIEYIPL---LAS--QLG----VGFFD---DKL-----GALCMQWLKDKVYSIRDAAANNVKR 462 (587)
Q Consensus 402 l~~-~~~-~~~~~vr~~~~~~l~~---l~~--~~~----~~~~~---~~l-----~~~l~~~l~d~~~~vr~~a~~~l~~ 462 (587)
+-+ ++. +..|+.....-+.+.. ++. .++ .+... ..+ -..+...+.|+..+||.+|+..++.
T Consensus 320 LdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~ 399 (823)
T KOG2259|consen 320 LDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCS 399 (823)
T ss_pred HHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHH
Confidence 322 222 2333332222222211 110 011 11000 011 2345667889999999999999999
Q ss_pred HHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHH
Q 007863 463 LAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSL 541 (587)
Q Consensus 463 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l 541 (587)
++.. .+. |....+..+.++++|....||.-|+.++..++..+. +.+..++.++..+.|.++++|.+.-..|...
T Consensus 400 La~s-sP~-FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 400 LATS-SPG-FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHcC-CCC-cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9853 222 567788899999999999999999999999987643 3578899999999999999999888877654
No 60
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=6.6e-07 Score=87.07 Aligned_cols=503 Identities=14% Similarity=0.099 Sum_probs=252.3
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhh--hccccccccCCchHH-HHHHHHHhcccccCcCCcchHhhh
Q 007863 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKE--LIPFLSENNDDDDEV-LLAMAEELGVFIPYVGGLEYANVL 87 (587)
Q Consensus 11 ~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~--l~p~l~~~~~~~~~v-~~~~~~~l~~~~~~~~~~~~~~~l 87 (587)
+....+.++++|-.....|+..+..+.. +|-...|.. .+.++....-.+..+ +.++...+... ......+
T Consensus 38 l~e~r~E~k~~d~~~k~~a~~kl~yl~m-lg~d~swa~f~iveVmsssk~~~krigylaa~qSf~~~------tdvlmL~ 110 (877)
T KOG1059|consen 38 LEEIRQELKSDDLNVKSNAVLKLTYLEM-LGVDMSWAAFHIVEVMSSSKFQQKRIGYLAASQSFHDD------TDVLMLT 110 (877)
T ss_pred HHHHHHHhhchhhhhhHHHHHHHHHHHH-HcchHHHHhhhhhhhhhhhhhHHHHHhHHHHHHhhcCC------ccHHHHH
Confidence 3445556666666666666666655533 355444432 223333221111122 11222222211 1222233
Q ss_pred hhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHH
Q 007863 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTI 167 (587)
Q Consensus 88 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~ 167 (587)
...+..-+.+.+..--.-|+..|..+.. + ++-..+-+-+..+..+..+.+|..|+.++..++..- ++....-+|-
T Consensus 111 tn~~rkdl~S~n~ye~giAL~GLS~fvT---p-dLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr~~Fpr 185 (877)
T KOG1059|consen 111 TNLLRKDLNSSNVYEVGLALSGLSCIVT---P-DLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALRPCFPR 185 (877)
T ss_pred HHHHHHHhccCccchhhheecccccccC---c-hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHhhhHHH
Confidence 3334443343333332334444444332 2 233445666666777777778888877665555544 2344456677
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccc-CchhHHHHHHHHHHHHhcccChhhhhhchHHHH
Q 007863 168 YRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEPQDCVAHILPVI 246 (587)
Q Consensus 168 l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l 246 (587)
+..-+.|++|.|..+|+..++.++...+. .+.+ +-|.|.+++.+ .+..+-.-.+..++.+...-|. .-..++|.+
T Consensus 186 L~EkLeDpDp~V~SAAV~VICELArKnPk-nyL~-LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR--LgKKLiepl 261 (877)
T KOG1059|consen 186 LVEKLEDPDPSVVSAAVSVICELARKNPQ-NYLQ-LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR--LGKKLIEPI 261 (877)
T ss_pred HHHhccCCCchHHHHHHHHHHHHHhhCCc-cccc-ccHHHHHHHhccCCCeehHHHHHHHhhccccCch--hhhhhhhHH
Confidence 77788999999999999999999987665 2322 44555555443 2222333344444444332221 234567777
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHHH-hCCCC--c---ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhH
Q 007863 247 VNFSQDKSWRVRYMVANQLYELCEA-VGPEP--T---RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHI 320 (587)
Q Consensus 247 ~~~~~d~~~~vR~~a~~~l~~l~~~-~~~~~--~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 320 (587)
..++..+.. .....+|+..+... +..+. . ..-.+.-+..++.|.|++.+.-++.+++.+++.-... ...-
T Consensus 262 t~li~sT~A--mSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~--Vqa~ 337 (877)
T KOG1059|consen 262 TELMESTVA--MSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA--VQAH 337 (877)
T ss_pred HHHHHhhHH--HHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH--HHHh
Confidence 777665532 11122333333322 11111 0 1113455566788999999999999999998854332 2334
Q ss_pred HHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhH--hhhh
Q 007863 321 LPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSL 398 (587)
Q Consensus 321 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~--~~~~ 398 (587)
-..+.+++.|.++.+|..|+..+..+.. ++...+.+-..+..+...+....|...+..+-.+|+.-....+ .+.+
T Consensus 338 kdlIlrcL~DkD~SIRlrALdLl~gmVs---kkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWY 414 (877)
T KOG1059|consen 338 KDLILRCLDDKDESIRLRALDLLYGMVS---KKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWY 414 (877)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHH
Confidence 4567788999999999999998877762 3333322222233333333346677766666666644322111 1344
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCC-----------chHHHHHHHHHHHHHHHHh
Q 007863 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDK-----------VYSIRDAAANNVKRLAEEF 467 (587)
Q Consensus 399 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-----------~~~vr~~a~~~l~~l~~~~ 467 (587)
+..+.++..=+..+.-....+.+..++-.+. ...+..+..+..++.|+ -.+|-.+|+-++|.+....
T Consensus 415 lsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~--~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~v 492 (877)
T KOG1059|consen 415 LSVLVELARLEGTRHGSLIAEQIIDVAIRVP--SIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFV 492 (877)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHheech--hhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHh
Confidence 5555555432222111112222222211110 01111122222222222 4578888888888888765
Q ss_pred ChhhhhhchHHHHHhhhcCC-ccHHHHHHH----HHHHHhhcccChHH-------HHHhHHHHHHhhcCCCCccHHHHHH
Q 007863 468 GPDWAMQHIVPQVLEMINNP-HYLYRMTIL----QAISLLAPVMGSEI-------TCSQLLPVVINASKDRVPNIKFNVA 535 (587)
Q Consensus 468 ~~~~~~~~~~~~l~~~l~~~-~~~~r~~a~----~~l~~l~~~~~~~~-------~~~~~l~~l~~~l~d~~~~vR~~a~ 535 (587)
... ...+..+.+-..+- ...+....+ +.+...+....+.. ..+.++..+-.+....+-+|...|.
T Consensus 493 en~---~~~leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~ 569 (877)
T KOG1059|consen 493 ENP---NDTLEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERAS 569 (877)
T ss_pred hCH---HHHHHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHH
Confidence 432 23344433322111 112333333 33333333222211 2355566666666777888888866
Q ss_pred HHHHHH
Q 007863 536 KVLQSL 541 (587)
Q Consensus 536 ~~l~~l 541 (587)
.++..+
T Consensus 570 ~~~~li 575 (877)
T KOG1059|consen 570 EVLELI 575 (877)
T ss_pred HHHHHH
Confidence 665544
No 61
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=5.1e-06 Score=85.99 Aligned_cols=178 Identities=8% Similarity=0.069 Sum_probs=131.8
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhChhhH----HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHH
Q 007863 407 EDRHWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQV 480 (587)
Q Consensus 407 ~~~~~~vr~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l 480 (587)
+..+..++..+.+.+..++..-..+.+ ...+...+...+++.....|...+.+|..+.+..+.+. +....+|.+
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~Ev 743 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEV 743 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344788999999999998876322222 34556666677788888999999999999999888553 345566666
Q ss_pred HhhhcCCccHHHHHHHHHHHHhh--c---ccChHH---HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch---HH
Q 007863 481 LEMINNPHYLYRMTILQAISLLA--P---VMGSEI---TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SV 549 (587)
Q Consensus 481 ~~~l~~~~~~~r~~a~~~l~~l~--~---~~~~~~---~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~ 549 (587)
.-.+++-+...|+.+..+|..++ + ..|.++ ..+.+++.+...+......++...+-++..+...+.. +.
T Consensus 744 IL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~ 823 (1176)
T KOG1248|consen 744 ILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDE 823 (1176)
T ss_pred HHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 55568888889999998888887 2 334333 5677777777777666777776666777777665443 56
Q ss_pred HHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHh
Q 007863 550 VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 584 (587)
Q Consensus 550 ~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~ 584 (587)
+...++..+.-++....++|+..|+..+..+...+
T Consensus 824 ~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~ 858 (1176)
T KOG1248|consen 824 TLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF 858 (1176)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC
Confidence 67788888888899999999999999999887654
No 62
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.24 E-value=1.6e-09 Score=95.24 Aligned_cols=344 Identities=15% Similarity=0.126 Sum_probs=229.1
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHhc-ccCchhHHHHHHHHHHHHhcccC
Q 007863 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKS----EIMSIFEELT-QDDQDSVRLLAVEGCGALGKLLE 234 (587)
Q Consensus 160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~----~i~~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~ 234 (587)
...++-++...+.+ ++-+.+..+..-+.++.+.-..+++.+ -.+|-+.+++ +.+.......|.-+|..+++.-.
T Consensus 69 ~~~elp~lt~~l~S-dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 69 FYSELPQLTQQLFS-DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred hhhhhHHHHHHHhh-hHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcc
Confidence 34445444444444 445555555555555554433333332 2466777777 44445567788888888877654
Q ss_pred hh---hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC--CC-cccchHHHHHHhcCCCh--HHHHHHHHHhHHH
Q 007863 235 PQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EP-TRSDVVPAYVRLLRDNE--AEVRIAAAGKVTK 306 (587)
Q Consensus 235 ~~---~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~ 306 (587)
.+ -.....+|.+.+++.+++..||..+..+||+++-.... +. .....+..+..++.++- ...-..+...|+.
T Consensus 148 ~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 148 QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 42 12345789999999999999999999999998743211 00 01123444455554443 3556678889999
Q ss_pred HHHhhCHH---HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH---HHHHhHHHHHHHhcCCCChHHHHHHHH
Q 007863 307 ICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIIS 380 (587)
Q Consensus 307 l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~ 380 (587)
++..-.+. ......+|.+.+++...++.|-.-|+.+++-+....... .....+.+-+..+|..++..++.-+++
T Consensus 228 lcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR 307 (526)
T COG5064 228 LCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALR 307 (526)
T ss_pred hhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHH
Confidence 98855443 335678999999999999999999999998887543211 112235567889999999999999999
Q ss_pred HhHHhhhhhchh---hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHcCCCchHHHH
Q 007863 381 KLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSIRD 454 (587)
Q Consensus 381 ~l~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~ 454 (587)
.++.+...-... .+.-..++.+..++.++...+|+.++..++.+-..-. ...+...+.|.++.++...+..+|+
T Consensus 308 ~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kK 387 (526)
T COG5064 308 SVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKK 387 (526)
T ss_pred hhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 999887432211 1223567888888999988999999988876642111 1122346789999999999999999
Q ss_pred HHHHHHHHHHHHhC--hhh----hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhc
Q 007863 455 AAANNVKRLAEEFG--PDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAP 504 (587)
Q Consensus 455 ~a~~~l~~l~~~~~--~~~----~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~ 504 (587)
.||-++........ ++. ..+.++..+..++.-.+..+-+.++.++.++.+
T Consensus 388 EACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 388 EACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 99999988765321 121 235566677777665555566777888888775
No 63
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.1e-08 Score=100.51 Aligned_cols=176 Identities=15% Similarity=0.128 Sum_probs=114.0
Q ss_pred HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhh
Q 007863 318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 397 (587)
Q Consensus 318 ~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~ 397 (587)
.+++.-+.....+-+...-+.++++++.++...... ..+++.+..+++-....|.+.+...+..+........ +.
T Consensus 349 ~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~--~~ 423 (734)
T KOG1061|consen 349 AQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY--ES 423 (734)
T ss_pred HHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch--hh
Confidence 446666777777777777777888888887654433 5677778888776666666667777776666554331 44
Q ss_pred hHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhch
Q 007863 398 LLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI 476 (587)
Q Consensus 398 ~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 476 (587)
+++.+...+.. .+++.|.+.+..++.-+..++. ..+++..++..+.|+...|+..-..+.-++.-..+.+ .+.+
T Consensus 424 vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~---a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~--tq~~ 498 (734)
T KOG1061|consen 424 VVAILCENLDSLQEPEAKAALIWILGEYAERIEN---ALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTE--TQEL 498 (734)
T ss_pred hhhhhcccccccCChHHHHHHHHHHhhhhhccCc---HHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCcc--HHHH
Confidence 55655554443 5678888888888888887765 4667888888888888888776665554444333322 2344
Q ss_pred HHHHHhh-hcC-CccHHHHHHHHHHHHhh
Q 007863 477 VPQVLEM-INN-PHYLYRMTILQAISLLA 503 (587)
Q Consensus 477 ~~~l~~~-l~~-~~~~~r~~a~~~l~~l~ 503 (587)
+..+... ..| .+..+|..++..-.-+.
T Consensus 499 l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 499 LQGVLPLATADTDNPDLRDRGLIYWRLLS 527 (734)
T ss_pred HHHHHhhhhccccChhhhhhHHHHHHHhh
Confidence 4444443 333 34577877776655554
No 64
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=4.6e-09 Score=100.55 Aligned_cols=249 Identities=19% Similarity=0.143 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh----
Q 007863 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---- 235 (587)
Q Consensus 160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---- 235 (587)
..+.+...+..+..+.++.||..|++.|-.+.+.+ .....+.....+.+.|++..||.+|++.+..+++..+-
T Consensus 195 d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~---kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 195 DREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF---KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred cHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc---cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 55667776888999999999999999999988733 44456677778899999999999999999888887732
Q ss_pred ----hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccch-HHHHHH-hcC-CChHHHHHHHHHhHHHHH
Q 007863 236 ----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDV-VPAYVR-LLR-DNEAEVRIAAAGKVTKIC 308 (587)
Q Consensus 236 ----~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l-~~~l~~-~l~-d~~~~vr~~a~~~l~~l~ 308 (587)
....+..+..+.....|.+|.||..|++.||.+-... .++ ...+-+ ++. +.-|......-+.+..=+
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS------ee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~G 345 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS------EEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSG 345 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH------HHHHHHHHHHHHhhhhhhhhhcccchHHHHhcC
Confidence 1234456777788889999999999999999876531 111 122211 111 111111111111111111
Q ss_pred -HhhCH--------HHH--------HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCC
Q 007863 309 -RILNP--------ELA--------IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 371 (587)
Q Consensus 309 -~~~~~--------~~~--------~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~ 371 (587)
..-|+ +.. ....-..+...+.|.-..||.+|..+++.++..- ..+....+.++..+++|+.
T Consensus 346 ewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss--P~FA~~aldfLvDMfNDE~ 423 (823)
T KOG2259|consen 346 EWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS--PGFAVRALDFLVDMFNDEI 423 (823)
T ss_pred CcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHhccHH
Confidence 00011 110 0112233556677888899999999999997542 2345566788999999999
Q ss_pred hHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHH
Q 007863 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 422 (587)
Q Consensus 372 ~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~ 422 (587)
..||..++.+|..|+..+.. .+..++.+...+.|.+.++|.++-+.+.
T Consensus 424 ~~VRL~ai~aL~~Is~~l~i---~eeql~~il~~L~D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 424 EVVRLKAIFALTMISVHLAI---REEQLRQILESLEDRSVDVREALRELLK 471 (823)
T ss_pred HHHHHHHHHHHHHHHHHhee---cHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999987543 3578899999999999999998877664
No 65
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.21 E-value=4.3e-09 Score=100.47 Aligned_cols=241 Identities=15% Similarity=0.071 Sum_probs=172.9
Q ss_pred HHHHHHHhc-ccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccch
Q 007863 203 IMSIFEELT-QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDV 281 (587)
Q Consensus 203 i~~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l 281 (587)
.++.+...+ .+++..++..++..+.... ....+..+...+.|.+..||..+++.|+.+. ....
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~--------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------~~~a 118 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQE--------DALDLRSVLAVLQAGPEGLCAGIQAALGWLG--------GRQA 118 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccC--------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------chHH
Confidence 344455555 5667888877666654321 1224778888889999999999999998653 4467
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHH
Q 007863 282 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP 361 (587)
Q Consensus 282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 361 (587)
.+.+..++++.++.||..++.+++.... + -.+.+..+++|+++.||..++.+++.+.. ....|
T Consensus 119 ~~~L~~~L~~~~p~vR~aal~al~~r~~----~-----~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~ 181 (410)
T TIGR02270 119 EPWLEPLLAASEPPGRAIGLAALGAHRH----D-----PGPALEAALTHEDALVRAAALRALGELPR--------RLSES 181 (410)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhcc----C-----hHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchH
Confidence 7889999999999999999877776322 1 23566777789999999999999998862 23456
Q ss_pred HHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHH
Q 007863 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 441 (587)
Q Consensus 362 ~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l 441 (587)
.+...+.|.++.||..++.++..+.. +...+.+..+..++.+..+..+...+... +. +..++.+
T Consensus 182 ~L~~al~d~~~~VR~aA~~al~~lG~--------~~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L 245 (410)
T TIGR02270 182 TLRLYLRDSDPEVRFAALEAGLLAGS--------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWL 245 (410)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHH
Confidence 67788999999999999999977653 23344555545555555555444443322 22 3567778
Q ss_pred HHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhc
Q 007863 442 MQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP 504 (587)
Q Consensus 442 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~ 504 (587)
..+++|+. +|..++.++|.+.. ...++.+...+.|+. +|..|-.++..|.-
T Consensus 246 ~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 246 RELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 88888865 99999999997642 557888888887665 88889999988864
No 66
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.21 E-value=3e-06 Score=89.47 Aligned_cols=487 Identities=14% Similarity=0.152 Sum_probs=235.8
Q ss_pred Cccc-HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccc-ccCCchHHHHHHHHHhcccccCcCCcchH
Q 007863 7 PLYP-IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYA 84 (587)
Q Consensus 7 ~~~~-~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~~~~~~~~~~~~ 84 (587)
++++ +..++..+..+-..+|-.|+++|+.+..+-..-...+.....+.. ..|.+..||.++.+.+|++.-... +..
T Consensus 813 sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~--e~~ 890 (1692)
T KOG1020|consen 813 SFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP--ELI 890 (1692)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH--HHH
Confidence 4455 344557777888899999999999986543332333444444444 557788999999999998865432 222
Q ss_pred hhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhcc-CCCH-----
Q 007863 85 NVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYP-SAPE----- 158 (587)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~-~~~~----- 158 (587)
...-.-+..-..|+...||+.+++.+..+|...+.-.....+..-+..-.+|+...+...+...+..++- -.+.
T Consensus 891 ~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~ 970 (1692)
T KOG1020|consen 891 FQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQP 970 (1692)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccH
Confidence 3333334444568999999999999999999876422222222222222344433344444444433321 1111
Q ss_pred HHHHHHH---HHHH---HhcCCCCHHHHHHHHHHHHHHHHHHh----hhhh-------HHHHHHHH--------HH----
Q 007863 159 ALKTELR---TIYR---QLCQDDMPMVRRSAATNLGKFAATVE----AAHL-------KSEIMSIF--------EE---- 209 (587)
Q Consensus 159 ~~~~~l~---~~l~---~l~~~~~~~vR~~a~~~l~~l~~~~~----~~~~-------~~~i~~~l--------~~---- 209 (587)
.....+. ..+. .+..+..+. .+..+.+... ...+ ....+.++ .+
T Consensus 971 ~~~~kI~~~~~vv~~~~d~~~~~~eq-------Ll~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~ 1043 (1692)
T KOG1020|consen 971 AKARKISLEVDVVMSQVDLMNDWLEQ-------LLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESD 1043 (1692)
T ss_pred HHHHhhHHHHHHHHHHHHHhcChHHH-------HHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhH
Confidence 0101000 0000 111111111 0111111000 0000 00011111 11
Q ss_pred hcccCchhHHHHHH-HHHHHHhcccCh---hhhhhchHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhCC--CCcccchH
Q 007863 210 LTQDDQDSVRLLAV-EGCGALGKLLEP---QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGP--EPTRSDVV 282 (587)
Q Consensus 210 l~~d~~~~vr~~a~-~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~ 282 (587)
...++...+|..+. ..|..++..-+. ......+.|.+..-++. ....+-...+..|......+.. +.+...+-
T Consensus 1044 ~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLE 1123 (1692)
T KOG1020|consen 1044 DMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLE 1123 (1692)
T ss_pred hhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHH
Confidence 12233445665444 445555443332 12334456666554332 2334445555555554443321 11112233
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH-HHHHhHHHHHhHh-------cCCC----c-HHHHHHHHHHHHhhhhh
Q 007863 283 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKEL-------SSDS----S-QHVRSALATVIMGMAPI 349 (587)
Q Consensus 283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~-------~~d~----~-~~vr~~a~~~l~~l~~~ 349 (587)
..+.+++-..+...-..|+-+++.+....... .+....+..+.+. .++. + +..++ .+..+|-++.+
T Consensus 1124 e~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~R-siftlG~l~Ry 1202 (1692)
T KOG1020|consen 1124 EDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQR-SIFTLGLLSRY 1202 (1692)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHH-HHHHHHHHHHh
Confidence 33333333344455566777888887753222 1222222222222 1122 1 22222 23455666665
Q ss_pred hc--------h------HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCc-HH-
Q 007863 350 LG--------K------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW-RV- 413 (587)
Q Consensus 350 ~~--------~------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~v- 413 (587)
+. + +...+.++..+.-+.++.+..+|..|+.+|+.++-.-..-...+.+...+...+.+.+. ..
T Consensus 1203 fdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ 1282 (1692)
T KOG1020|consen 1203 FDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKS 1282 (1692)
T ss_pred ccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHH
Confidence 42 1 13445667777777888889999999999999986544333344555556555555432 22
Q ss_pred HHHHHHHHHHHHHhh------------------------------Chhh----HHHHHHHHHHHHcCCCchHHHHHHHHH
Q 007863 414 RLAIIEYIPLLASQL------------------------------GVGF----FDDKLGALCMQWLKDKVYSIRDAAANN 459 (587)
Q Consensus 414 r~~~~~~l~~l~~~~------------------------------~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~ 459 (587)
+..+++.+..+...- +... +.+.+++.++...-|.+..+|..|++.
T Consensus 1283 ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikv 1362 (1692)
T KOG1020|consen 1283 KIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKV 1362 (1692)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 334444433322110 0110 112334444444445566666666666
Q ss_pred HHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcc
Q 007863 460 VKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV 505 (587)
Q Consensus 460 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~ 505 (587)
+.-+.. .|-- .-...+|++..+-+|+....|..|-..+..+-+.
T Consensus 1363 l~liL~-QGLV-hP~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~k 1406 (1692)
T KOG1020|consen 1363 LKLILN-QGLV-HPVHCVPTLIALETDPSQAIRHVADELLKEIDEK 1406 (1692)
T ss_pred HHHHHH-ccCC-CccchhhhheeecCChHHHHHHHHHHHHHHHHHh
Confidence 555443 1211 1134556666666666666666666666555543
No 67
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=2.1e-07 Score=91.47 Aligned_cols=489 Identities=14% Similarity=0.101 Sum_probs=273.9
Q ss_pred HHHHHHHHHhccccc--CcCCcchHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCC
Q 007863 62 EVLLAMAEELGVFIP--YVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWF 139 (587)
Q Consensus 62 ~v~~~~~~~l~~~~~--~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~ 139 (587)
..+..+.+.+.-+.. .+|. ..+..++-.+.++.++.|+..|+..--+++.+.....+- . .+..-+..-.+....
T Consensus 39 ~c~~~lskllyll~qge~~~~-~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedv--i-ivtsslmkD~t~~~d 114 (865)
T KOG1078|consen 39 KCRHILSKLLYLLNQGEHFGE-TEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDV--I-IVTSSLMKDMTGKED 114 (865)
T ss_pred HHHHHHHHHHHHHhcccccch-hhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhh--h-hhhHHHHhhccCCCc
Confidence 344455555443322 2332 234566667888889999999998877777766543211 0 111122211223345
Q ss_pred cchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHH
Q 007863 140 TARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVR 219 (587)
Q Consensus 140 ~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr 219 (587)
..|..|+..+..+.. ......+-..+.+..-|.++.++.++.-.=-.+... .+..........+....+.+..++
T Consensus 115 ~yr~~AiR~L~~I~d---~~m~~~iery~kqaivd~~~avSsaalvss~hll~~--~~~~vkrw~neiqea~~s~~~m~Q 189 (865)
T KOG1078|consen 115 LYRAAAIRALCSIID---GTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPI--SFDVVKRWANEVQEAVNSDNIMVQ 189 (865)
T ss_pred chhHHHHHHHHhhcC---cchhHHHHHHHHhHeeccccccchHHHHHHhhhhcc--cHHHHHHHHHhhhhccCcHHHHHH
Confidence 566666665544433 334455556667777888887776554322222221 122223333334444555555566
Q ss_pred HHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC-CCcccchHHHHHHhcCCChHHHHH
Q 007863 220 LLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EPTRSDVVPAYVRLLRDNEAEVRI 298 (587)
Q Consensus 220 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~ 298 (587)
-.|...+-.+-+.-.- ....++..+.+ -.-.++..+..-.+.- +..+.. ......+.+.+-+.+......|-.
T Consensus 190 yHalglLyqirk~drl--a~sklv~~~~~-~~~~~~~A~~~lir~~---~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~ 263 (865)
T KOG1078|consen 190 YHALGLLYQIRKNDRL--AVSKLVQKFTR-GSLKSPLAVCMLIRIA---SELLKENQQADSPLFPFLESCLRHKSEMVIY 263 (865)
T ss_pred HHHHHHHHHHHhhhHH--HHHHHHHHHcc-ccccchhHHHHHHHHH---HHHhhhcccchhhHHHHHHHHHhchhHHHHH
Confidence 6666666554331100 01112221111 0011221111111111 111111 122345788888889988889999
Q ss_pred HHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHH
Q 007863 299 AAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNI 378 (587)
Q Consensus 299 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a 378 (587)
.|++++..+....+.+. ...+..+..+++.+...+|.+|.+.|.+++...+.... ..-+-+..+..|.+..+-.-|
T Consensus 264 EaArai~~l~~~~~r~l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~--~cN~elE~lItd~NrsIat~A 339 (865)
T KOG1078|consen 264 EAARAIVSLPNTNSREL--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT--VCNLDLESLITDSNRSIATLA 339 (865)
T ss_pred HHHHHHhhccccCHhhc--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc--ccchhHHhhhcccccchhHHH
Confidence 99998888866554442 22566677788899999999999999999866543221 122346667777766655554
Q ss_pred HHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcC-CCchHHHHHHH
Q 007863 379 ISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAA 457 (587)
Q Consensus 379 ~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~ 457 (587)
...+-+- |.+.-.+.++..+..++.|-+...+..+++.+..++..++.. ...+++.+.+.++ +.-.+-+.+.+
T Consensus 340 ITtLLKT----G~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k--~~~~m~FL~~~Lr~eGg~e~K~aiv 413 (865)
T KOG1078|consen 340 ITTLLKT----GTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRK--HTVMMNFLSNMLREEGGFEFKRAIV 413 (865)
T ss_pred HHHHHHh----cchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHH--HHHHHHHHHHHHHhccCchHHHHHH
Confidence 4444332 333333556666666666555444555556666666655433 2345555555554 34557777788
Q ss_pred HHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHH
Q 007863 458 NNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKV 537 (587)
Q Consensus 458 ~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~ 537 (587)
+++-.++...... .+..+..+.+.+.|.. .+.-+...+..++...+....-...+..+.+...=.+..||.+|..+
T Consensus 414 d~Ii~iie~~pds--Ke~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~a 489 (865)
T KOG1078|consen 414 DAIIDIIEENPDS--KERGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSA 489 (865)
T ss_pred HHHHHHHHhCcch--hhHHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHH
Confidence 8887777644332 3555666666665543 34556666666665443322222333333333333578899999999
Q ss_pred HHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863 538 LQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 538 l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~ 581 (587)
+..+. .+.......+.-.+..++.|+|..||.+|.-++..+.
T Consensus 490 laKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 490 LAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 98887 3334445567777778889999999999888887765
No 68
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=1.1e-05 Score=82.09 Aligned_cols=348 Identities=13% Similarity=0.098 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh--
Q 007863 158 EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-- 235 (587)
Q Consensus 158 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-- 235 (587)
++.+..+.+-+...+......+|.....++..+...= .+..++.+++....++++++...--.+.-++..+.+...-
T Consensus 84 e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D-~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~ 162 (1010)
T KOG1991|consen 84 EEDKAVIRENILETIVQVPELIRVQLTACLNTIIKAD-YPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKK 162 (1010)
T ss_pred hHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcC-CcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhcc
Confidence 3445555555555544446778888888877766542 2467889999999999999888888888888888765431
Q ss_pred -----------hhhhhchHHHHHHhcCCCchH---HHHHHHHHHHHHHHH-hCCCCcccc----hHHHHHHhcC------
Q 007863 236 -----------QDCVAHILPVIVNFSQDKSWR---VRYMVANQLYELCEA-VGPEPTRSD----VVPAYVRLLR------ 290 (587)
Q Consensus 236 -----------~~~~~~l~~~l~~~~~d~~~~---vR~~a~~~l~~l~~~-~~~~~~~~~----l~~~l~~~l~------ 290 (587)
+...+.+...+..++.+++.. ..+..++.+-..+.. ++......+ .+.++...++
T Consensus 163 ~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E 242 (1010)
T KOG1991|consen 163 DEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVE 242 (1010)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChh
Confidence 112233444444556665443 334444444333322 222222222 2333333332
Q ss_pred ----C-------ChHHHHHHHHHhHHHHHHhhCHHH------------H----HHhHHHHHhHhcC---C---CcHHHHH
Q 007863 291 ----D-------NEAEVRIAAAGKVTKICRILNPEL------------A----IQHILPCVKELSS---D---SSQHVRS 337 (587)
Q Consensus 291 ----d-------~~~~vr~~a~~~l~~l~~~~~~~~------------~----~~~~~~~l~~~~~---d---~~~~vr~ 337 (587)
| +=|.+++-|+..+.++...+|... + ...++..+.+.+. . -+++|-.
T Consensus 243 ~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~ 322 (1010)
T KOG1991|consen 243 VLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLY 322 (1010)
T ss_pred cccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 2 225688899999999998876421 1 1112222222221 1 2345555
Q ss_pred HHHHHHHhhhhhh------chH---HHHHhHHHHHHH------hc-CCCChHHHH-------------HHHHHhHHhhhh
Q 007863 338 ALATVIMGMAPIL------GKD---ATIEQLLPIFLS------LL-KDEFPDVRL-------------NIISKLDQVNQV 388 (587)
Q Consensus 338 ~a~~~l~~l~~~~------~~~---~~~~~l~~~l~~------~l-~d~~~~vr~-------------~a~~~l~~i~~~ 388 (587)
.+...+......- ++. .+.+.+.|.+.- +. .|+.+-+|. ++...+..++..
T Consensus 323 ~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~K 402 (1010)
T KOG1991|consen 323 YLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSK 402 (1010)
T ss_pred HHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHh
Confidence 5555444433211 110 011223333321 00 123334444 456666777776
Q ss_pred hchhhHhhhhHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhCh-h----hHHHHHHHHHHHHcCCCchHHHHH
Q 007863 389 IGIDLLSQSLLPAIVELAE--------DRHWRVRLAIIEYIPLLASQLGV-G----FFDDKLGALCMQWLKDKVYSIRDA 455 (587)
Q Consensus 389 ~~~~~~~~~~~~~l~~~~~--------~~~~~vr~~~~~~l~~l~~~~~~-~----~~~~~l~~~l~~~l~d~~~~vr~~ 455 (587)
-|++.+ +.+++.+.+.+. ..+++-+..++..++.++..+.. . .+...+++.+...++++.--.|..
T Consensus 403 R~ke~l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrar 481 (1010)
T KOG1991|consen 403 RGKETL-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRAR 481 (1010)
T ss_pred cchhhh-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHH
Confidence 666554 567777666654 24678888999999999976632 2 223345666777789999999999
Q ss_pred HHHHHHHHH-HHhChhhhhhchHHHHHhhhc-CCccHHHHHHHHHHHHhhcccC
Q 007863 456 AANNVKRLA-EEFGPDWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMG 507 (587)
Q Consensus 456 a~~~l~~l~-~~~~~~~~~~~~~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~ 507 (587)
||..++.++ ..+........++....+.+. |++-.||..|+.++..+.....
T Consensus 482 ac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~ 535 (1010)
T KOG1991|consen 482 ACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQE 535 (1010)
T ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch
Confidence 999999998 345444334455555555554 8889999999999999987554
No 69
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.14 E-value=6.3e-09 Score=93.53 Aligned_cols=187 Identities=20% Similarity=0.249 Sum_probs=128.6
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----HH---HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH
Q 007863 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LA---IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD 353 (587)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~---~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~ 353 (587)
+...|..--.+.+|+.|..++..+..+...-.+. .+ ...++..+...+.|....|-..|+.++..++...+..
T Consensus 8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~ 87 (228)
T PF12348_consen 8 ILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH 87 (228)
T ss_dssp S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh
Confidence 4444444446677888888888888877754111 11 1233355666777777888899999999998888743
Q ss_pred --HHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhc-hhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC-
Q 007863 354 --ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG- 429 (587)
Q Consensus 354 --~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~-~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~- 429 (587)
.+.+.++|.+.+.+.|....+|..+..+|..++...+ .. ..+.+.+.....++++.+|..++.++..+....+
T Consensus 88 ~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~---~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 88 FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSP---KILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 3567899999999999999999999999999998876 22 2237777788899999999999999999988777
Q ss_pred -hhh-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh
Q 007863 430 -VGF-----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 470 (587)
Q Consensus 430 -~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 470 (587)
... ..+.+.+.+..++.|.+++||..|-.++..+.+.+|..
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 111 23668999999999999999999999999999988765
No 70
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.7e-06 Score=84.75 Aligned_cols=358 Identities=11% Similarity=0.104 Sum_probs=221.5
Q ss_pred HHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHH
Q 007863 205 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPA 284 (587)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~ 284 (587)
..+.+-++++++.+|-...+.+.++ .+.+..+.+.|.+..++++.+..||+.|.-++..|...+.. ..++.-..
T Consensus 102 na~RkDLQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~--L~pDapeL 175 (948)
T KOG1058|consen 102 NAYRKDLQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH--LIPDAPEL 175 (948)
T ss_pred HHHhhhccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh--hcCChHHH
Confidence 4455667888899998887777654 34557888999999999999999999999998888765221 12222233
Q ss_pred HHHh-cCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHH
Q 007863 285 YVRL-LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF 363 (587)
Q Consensus 285 l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l 363 (587)
+... ..+.++..+..|.-.|-.. .++...+.+...+.+ ..+-+........+.+...+..- .......+..+
T Consensus 176 i~~fL~~e~DpsCkRNAFi~L~~~----D~ErAl~Yl~~~idq-i~~~~~~LqlViVE~Irkv~~~~--p~~~~~~i~~i 248 (948)
T KOG1058|consen 176 IESFLLTEQDPSCKRNAFLMLFTT----DPERALNYLLSNIDQ-IPSFNDSLQLVIVELIRKVCLAN--PAEKARYIRCI 248 (948)
T ss_pred HHHHHHhccCchhHHHHHHHHHhc----CHHHHHHHHHhhHhh-ccCccHHHHHHHHHHHHHHHhcC--HHHhhHHHHHH
Confidence 3332 3456677777766555433 444333333333322 12233455566666665555421 12233456677
Q ss_pred HHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHh-cCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHH
Q 007863 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM 442 (587)
Q Consensus 364 ~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 442 (587)
..+|..+++.|+..++.++..+... +.. .......+.+++ +.++-.++.-.+.-+..+.. ..+...+.+.--++
T Consensus 249 ~~lL~stssaV~fEaa~tlv~lS~~--p~a-lk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~il~~l~mDvL 323 (948)
T KOG1058|consen 249 YNLLSSTSSAVIFEAAGTLVTLSND--PTA-LKAAASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEKILQGLIMDVL 323 (948)
T ss_pred HHHHhcCCchhhhhhcceEEEccCC--HHH-HHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHHHHHHHHHHHH
Confidence 7888888999999988887776543 111 122233333333 33444555555555555442 12223344555567
Q ss_pred HHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhh---hcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHH
Q 007863 443 QWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM---INNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV 519 (587)
Q Consensus 443 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~---l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l 519 (587)
+.+..++-+||..++...-.++..-..+.+...+-..+.+- -.+.+...|+.-++++..++-.++. +...++|.+
T Consensus 324 rvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~l 401 (948)
T KOG1058|consen 324 RVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLL 401 (948)
T ss_pred HHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHH
Confidence 88899999999999988777776433322222111122211 1334677899999999988876643 578899999
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhh
Q 007863 520 INASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 585 (587)
Q Consensus 520 ~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~ 585 (587)
++.+.|.++.--...+..+....+.++.- .+...++..+.+. ....+-+.|.+.++..++..+
T Consensus 402 l~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~i---rS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 402 LDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQI---RSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhh---cccccchhHHHHHHHHHhhhH
Confidence 99999999988888888888888877541 2223333333333 345566778888888777654
No 71
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=99.08 E-value=1.5e-08 Score=103.45 Aligned_cols=358 Identities=16% Similarity=0.181 Sum_probs=237.3
Q ss_pred HHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCc-ccch
Q 007863 203 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-RSDV 281 (587)
Q Consensus 203 i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~-~~~l 281 (587)
+++.....+..+....|.....++..+... ......+..+..+.+-..+..-..++..+..+....|.... ...+
T Consensus 64 l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~----~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~ 139 (815)
T KOG1820|consen 64 LLSFGLKCLDSKRVNIRDTKTQSLLRIGKL----EDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAF 139 (815)
T ss_pred eccchhhhcccccccccCcchhHHHHHHHh----hhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccc
Confidence 444445555555556666666666665221 12344556666677777777777777777778777664332 2234
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHH--HHHhH
Q 007863 282 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQL 359 (587)
Q Consensus 282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l 359 (587)
++.+-++. +..||..+.+.+..+....|.... +. -.+..+....+.+..+.|... +...-
T Consensus 140 ~~~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~-----~~----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 201 (815)
T KOG1820|consen 140 IKHVGSLA---DKNVRSEASKLLVEIYRWTGDASK-----PL----------LFKASAPGLMGKLGSYQGKSMMSFFNEK 201 (815)
T ss_pred cccCcccc---ccccchhhcccchhhhhhcCCCcC-----cc----------cchhhhHHHHHHHHhhcccccccccccc
Confidence 44444444 567999999999999876665421 10 114444445555544443211 11111
Q ss_pred HHHHHHhcCC------------CChHHHHHHHHHhH--HhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 007863 360 LPIFLSLLKD------------EFPDVRLNIISKLD--QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (587)
Q Consensus 360 ~~~l~~~l~d------------~~~~vr~~a~~~l~--~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~ 425 (587)
.+.......+ +...++...-..-. .-...+...+....+-+.+...+.+++|.-|..+++.+....
T Consensus 202 ~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l 281 (815)
T KOG1820|consen 202 RPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAIL 281 (815)
T ss_pred ccccccccccccCCChhhcccccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHH
Confidence 1111111111 11111111000000 001112233445667777888889999999999999988777
Q ss_pred HhhC---hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCccHHHHHHHHHHH
Q 007863 426 SQLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRMTILQAIS 500 (587)
Q Consensus 426 ~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~~~~r~~a~~~l~ 500 (587)
..-+ ...+...+...+-....|.+..|-..|+.++..++..++..+ +...++|.+++.+.+....+|.++..++.
T Consensus 282 ~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d 361 (815)
T KOG1820|consen 282 EEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALD 361 (815)
T ss_pred hccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHH
Confidence 6544 112223344445556789999999999999999999888764 45778999999999999999999999999
Q ss_pred HhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch----HHHHHhHHHHHHHhcCCCCccHHHHHHHH
Q 007863 501 LLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ----SVVEKSIRPCLVELSEDPDVDVRFFATQA 576 (587)
Q Consensus 501 ~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~l~~d~~~~Vr~~a~~a 576 (587)
.++...+ ...+.+.+..++++.+|.+|..+...+.......+. ......+.|.+....+|.+.+||..|.++
T Consensus 362 ~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~ 437 (815)
T KOG1820|consen 362 AILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEA 437 (815)
T ss_pred HHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHH
Confidence 8887443 457888999999999999999999999999888773 35556789999999999999999999999
Q ss_pred HHHHHHHhhc
Q 007863 577 LQSKDQVMMS 586 (587)
Q Consensus 577 l~~l~~~~~~ 586 (587)
++.+..++|.
T Consensus 438 ~~~v~k~~Ge 447 (815)
T KOG1820|consen 438 VAAVMKVHGE 447 (815)
T ss_pred HHHHHHHhhH
Confidence 9999999884
No 72
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=7.6e-06 Score=79.74 Aligned_cols=456 Identities=11% Similarity=0.091 Sum_probs=217.6
Q ss_pred HHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH-HHHHHHHHHH
Q 007863 91 LETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA-LKTELRTIYR 169 (587)
Q Consensus 91 l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~-~~~~l~~~l~ 169 (587)
+.+-+.+.|+.-..-|+.+++.++..--.+.+...+-.++.. .+....+|..|+-.+-.+++..++- ....+.+.+.
T Consensus 116 iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS--~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv 193 (938)
T KOG1077|consen 116 IKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVS--GSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIV 193 (938)
T ss_pred HHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhC--CcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHH
Confidence 333344566666677777777776543223333333222221 1112334444443333455555443 3447778888
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHh
Q 007863 170 QLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF 249 (587)
Q Consensus 170 ~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 249 (587)
.++.|.+..|-.++...+..+++..++ .+...+.+.+..+.. .++...........-.++.....-.++..+.-+
T Consensus 194 ~LL~D~~~gv~ta~~sLi~~lvk~~p~-~yk~~~~~avs~L~r----iv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~ 268 (938)
T KOG1077|consen 194 HLLDDQHMGVVTAATSLIEALVKKNPE-SYKTCLPLAVSRLSR----IVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY 268 (938)
T ss_pred HHhCccccceeeehHHHHHHHHHcCCH-HHhhhHHHHHHHHHH----HHhhcccchhhceeecCCChHHHHHHHHHHHhC
Confidence 888888888888888888888877654 333222222211110 000000000001011111111111223333333
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH-HHHHhHHHHHhHhc
Q 007863 250 SQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKELS 328 (587)
Q Consensus 250 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~~ 328 (587)
-.-.++.+|....+++..+.....+....+++ ....++.+.+--.-.++-+++++ .........+.+++
T Consensus 269 p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~v----------q~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fl 338 (938)
T KOG1077|consen 269 PTPEDPSTRARLNEVLERILNKAQEPPKSKKV----------QHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFL 338 (938)
T ss_pred CCCCCchHHHHHHHHHHHHHhccccCccccch----------HhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 33446667777777777665432211100000 01122233332233333333333 23344555666667
Q ss_pred CCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcC-CCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhc
Q 007863 329 SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 407 (587)
Q Consensus 329 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~ 407 (587)
.+.+..+|.-+.+.+..++..-.......+-...+...|+ +.+..+|+.++.-|-.++..-..+ .++.-+.+.+.
T Consensus 339 s~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak----~IV~elLqYL~ 414 (938)
T KOG1077|consen 339 SHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK----QIVAELLQYLE 414 (938)
T ss_pred hcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHH----HHHHHHHHHHh
Confidence 7788888888888888877543222222223556666666 778888888888888887654433 34444455555
Q ss_pred CCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHc---CCCc-hHHHHHHHHHHHHHHHH-hChhhhhhchHHHHHh
Q 007863 408 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL---KDKV-YSIRDAAANNVKRLAEE-FGPDWAMQHIVPQVLE 482 (587)
Q Consensus 408 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~d~~-~~vr~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~ 482 (587)
..++.+|...+--+..+++.+..+ ....+..+++++ +|-. .+| +-.++.. ...+......-..+++
T Consensus 415 tAd~sireeivlKvAILaEKyAtD--y~WyVdviLqLiriagd~vsdeV-------W~RvvQiVvNnedlq~yaak~~fe 485 (938)
T KOG1077|consen 415 TADYSIREEIVLKVAILAEKYATD--YSWYVDVILQLIRIAGDYVSDEV-------WYRVVQIVVNNEDLQGYAAKRLFE 485 (938)
T ss_pred hcchHHHHHHHHHHHHHHHHhcCC--cchhHHHHHHHHHHhcccccHHH-------HHHhheeEecchhhhHHHHHHHHH
Confidence 677788888777666666655443 223344444433 1111 111 1111110 0111112222333333
Q ss_pred hhcCCc--cHHHHHHHHHHHHhhcccChHH--HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHH
Q 007863 483 MINNPH--YLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCL 558 (587)
Q Consensus 483 ~l~~~~--~~~r~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l 558 (587)
.+..+. ...-.++...+|.+++.+..+. .....+..+-+-+.-.++..|...+.+.-.++... +.+...+...+
T Consensus 486 ~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~--PEi~~~v~~vF 563 (938)
T KOG1077|consen 486 YLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLF--PEIKSNVQKVF 563 (938)
T ss_pred HHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhC--hhhhHHHHHHH
Confidence 333331 1112233344444444322110 11223333334444445666666666665555544 23344555555
Q ss_pred HHhcCCCCccHHHHHHHHHH
Q 007863 559 VELSEDPDVDVRFFATQALQ 578 (587)
Q Consensus 559 ~~l~~d~~~~Vr~~a~~al~ 578 (587)
....+-.|.+++.+|.+=|.
T Consensus 564 q~~~n~~D~ElQqRa~EYLq 583 (938)
T KOG1077|consen 564 QLYSNLIDVELQQRAVEYLQ 583 (938)
T ss_pred HhhcccCCHHHHHHHHHHHH
Confidence 55556677777777766543
No 73
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.06 E-value=3.1e-05 Score=77.94 Aligned_cols=212 Identities=13% Similarity=0.089 Sum_probs=139.4
Q ss_pred CChHHHHHHHHHhHHhhhhh--chhhHhhhhHHHHHH-HhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcC
Q 007863 370 EFPDVRLNIISKLDQVNQVI--GIDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK 446 (587)
Q Consensus 370 ~~~~vr~~a~~~l~~i~~~~--~~~~~~~~~~~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 446 (587)
..|..-..+...++.+.+.. .+. +.+.++....+ +..|..+-+|..+++.+...++.---..+.+.++..++++..
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~-~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas 540 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQ-LLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLAS 540 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchh-HHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcc
Confidence 44555556666677666542 222 22333333333 335667778888888877666332223345778888888899
Q ss_pred CCchHHHHHHHHHHHHHHHHhChhh---hhhchHHHHHhhh--cCCccHHHHHHHHHHHHhhcccC-hHHHHHhHHHHHH
Q 007863 447 DKVYSIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEMI--NNPHYLYRMTILQAISLLAPVMG-SEITCSQLLPVVI 520 (587)
Q Consensus 447 d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~~l--~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~~l~~l~ 520 (587)
+...+|-....++|...++. .+++ ....+.|.....+ ...++.+-..+-.++..+.+... .+.+.+..+|.++
T Consensus 541 ~~s~evl~llmE~Ls~vv~~-dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPsli 619 (1005)
T KOG2274|consen 541 KSSDEVLVLLMEALSSVVKL-DPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLI 619 (1005)
T ss_pred cccHHHHHHHHHHHHHHhcc-ChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 99999999999999888873 4433 2366777766642 22234566666677766665221 1235788899999
Q ss_pred hhcCCCC----ccHHHHHHHHHHHHHhhhchH---HHHHhHHHHHHHh-cCCCCccHHHHHHHHHHHHHHH
Q 007863 521 NASKDRV----PNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVEL-SEDPDVDVRFFATQALQSKDQV 583 (587)
Q Consensus 521 ~~l~d~~----~~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~l-~~d~~~~Vr~~a~~al~~l~~~ 583 (587)
+.+.-+. +..-..++..|..+...-+++ .+...++|++.++ +...|...-.++.+||..+.+.
T Consensus 620 sil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 620 SVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 8887665 667778888888887775543 5667788888884 5566777888999998877654
No 74
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=3.7e-05 Score=78.27 Aligned_cols=131 Identities=11% Similarity=0.092 Sum_probs=91.1
Q ss_pred HHHHHHHHhhhhhhchHHHHHhHHHHHHHhcC------CC--ChHHHHHHHHHhHHhhhhhchh-----hHhhhhHHHHH
Q 007863 337 SALATVIMGMAPILGKDATIEQLLPIFLSLLK------DE--FPDVRLNIISKLDQVNQVIGID-----LLSQSLLPAIV 403 (587)
Q Consensus 337 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~--~~~vr~~a~~~l~~i~~~~~~~-----~~~~~~~~~l~ 403 (587)
.++...+..++..-|++ ..+.+++.+...++ .+ ++.-+.+|+..++.+++.+..+ .+...+.+.+.
T Consensus 390 ~Aa~~~l~~~~~KR~ke-~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVf 468 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKRGKE-TLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVF 468 (1010)
T ss_pred HHHHHHHHHHHHhcchh-hhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhh
Confidence 34555555565554443 34566666666665 22 4556678888999888776543 22233445555
Q ss_pred HHhcCCCcHHHHHHHHHHHHHH-HhhChhhHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHhC
Q 007863 404 ELAEDRHWRVRLAIIEYIPLLA-SQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFG 468 (587)
Q Consensus 404 ~~~~~~~~~vr~~~~~~l~~l~-~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~ 468 (587)
..++++..-.|..++..++.++ -.+.........+....+++. |++-.||..|+-+|..++....
T Consensus 469 P~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~ 535 (1010)
T KOG1991|consen 469 PEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQE 535 (1010)
T ss_pred HhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch
Confidence 5668888899999999999998 344444445667788888887 8899999999999999987654
No 75
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=99.04 E-value=7.7e-09 Score=100.58 Aligned_cols=255 Identities=13% Similarity=0.206 Sum_probs=206.2
Q ss_pred cCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcC
Q 007863 289 LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK 368 (587)
Q Consensus 289 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 368 (587)
+.=.+.+-|..-...|......+..+.....++|.+...+.-.+ --..+...+-.++..+....+...+.|.+.++++
T Consensus 263 l~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~ 340 (690)
T KOG1243|consen 263 LRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFK 340 (690)
T ss_pred cccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhc
Confidence 44455677777777787777777777777888888876654333 0111112222334444555577889999999999
Q ss_pred CCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCC
Q 007863 369 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDK 448 (587)
Q Consensus 369 d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 448 (587)
..+..+|...++.+..++..+..+.+.+.++|.+...+.|.+..+|...+..+..++..++.......++..+-+.-.|.
T Consensus 341 ~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~ 420 (690)
T KOG1243|consen 341 SPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDE 420 (690)
T ss_pred CcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccc
Confidence 99999999999999999999999999899999999999999999999999999999999998877788888888888899
Q ss_pred chHHHHHHHHHHHHHHHHhChhhhhhchHH-HHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCC
Q 007863 449 VYSIRDAAANNVKRLAEEFGPDWAMQHIVP-QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRV 527 (587)
Q Consensus 449 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~ 527 (587)
...+|....-|++++........ ++.++. .....+.|+-..-|.+++..+....+.+.......+++|.+..+..|++
T Consensus 421 ~~~irtntticlgki~~~l~~~~-R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e 499 (690)
T KOG1243|consen 421 HGGIRTNTTICLGKIAPHLAASV-RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPE 499 (690)
T ss_pred cCcccccceeeecccccccchhh-hccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcc
Confidence 99999999999999988765543 333333 4444588998889999999999999888888889999999999999999
Q ss_pred ccHHHHHHHHHHHHHhhhc
Q 007863 528 PNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 528 ~~vR~~a~~~l~~l~~~~~ 546 (587)
..+|..+-+++........
T Consensus 500 ~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 500 KTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred cchhhHHHHHHHHHHhhhh
Confidence 9999999999988776643
No 76
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=99.03 E-value=4.2e-06 Score=84.49 Aligned_cols=141 Identities=16% Similarity=0.113 Sum_probs=86.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhc
Q 007863 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAH 241 (587)
Q Consensus 162 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 241 (587)
..+++-+.+.....|.++++-.=-.|..+++..++ ..-..++.+.+-++|+++.+|..|++.++.+-. .+....
T Consensus 54 ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~--~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~----~el~~~ 127 (757)
T COG5096 54 SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPE--LALLAVNTIQKDLQDPNEEIRGFALRTLSLLRV----KELLGN 127 (757)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHhhccCCCHHHHHHHHHHHHhcCh----HHHHHH
Confidence 33444444444456666666666666665554432 222345566666777777777777777765432 345666
Q ss_pred hHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccc-hHHHHHHhcCCChHHHHHHHHHhHHHHHH
Q 007863 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD-VVPAYVRLLRDNEAEVRIAAAGKVTKICR 309 (587)
Q Consensus 242 l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 309 (587)
+++.+.+++.|+++.||+.|+-++.++... +++..... ....+..++.|.++.|..+|+.++..+..
T Consensus 128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 128 IIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 777777777777777777777777776543 22333333 56666667777777777777777766644
No 77
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=6.3e-06 Score=81.40 Aligned_cols=423 Identities=14% Similarity=0.110 Sum_probs=233.1
Q ss_pred HHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHH
Q 007863 90 PLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYR 169 (587)
Q Consensus 90 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~ 169 (587)
.+.+-....++..|..|+++|..+...--...+.. ++.+..-+..+.+..+|..---.+. ..+....+.+...+.
T Consensus 104 slmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~ier----y~kqaivd~~~avSsaalvss~hll-~~~~~~vkrw~neiq 178 (865)
T KOG1078|consen 104 SLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIER----YMKQAIVDKNPAVSSAALVSSYHLL-PISFDVVKRWANEVQ 178 (865)
T ss_pred HHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHH----HHHhHeeccccccchHHHHHHhhhh-cccHHHHHHHHHhhh
Confidence 34444556678889999999888876533222333 3333333444444444332111122 233555666666677
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-hcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHH
Q 007863 170 QLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEE-LTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN 248 (587)
Q Consensus 170 ~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~-l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 248 (587)
....+.+..++.-+...|-.+-+.- .-....++..+.. .+. ++--+..-++....+.+.. ......+.+++..
T Consensus 179 ea~~s~~~m~QyHalglLyqirk~d--rla~sklv~~~~~~~~~--~~~A~~~lir~~~~~l~~~--~~~~s~~~~fl~s 252 (865)
T KOG1078|consen 179 EAVNSDNIMVQYHALGLLYQIRKND--RLAVSKLVQKFTRGSLK--SPLAVCMLIRIASELLKEN--QQADSPLFPFLES 252 (865)
T ss_pred hccCcHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHcccccc--chhHHHHHHHHHHHHhhhc--ccchhhHHHHHHH
Confidence 7777777777766666665554321 1112222222222 111 1211222222222222111 2234568888899
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhc
Q 007863 249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS 328 (587)
Q Consensus 249 ~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~ 328 (587)
++.++...|-..+++++..+....+.+.. ..+..+..+++.+..-.|.+|.+.|..++-..+... ..--.-+..+.
T Consensus 253 ~l~~K~emV~~EaArai~~l~~~~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v--~~cN~elE~lI 328 (865)
T KOG1078|consen 253 CLRHKSEMVIYEAARAIVSLPNTNSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV--TVCNLDLESLI 328 (865)
T ss_pred HHhchhHHHHHHHHHHHhhccccCHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc--cccchhHHhhh
Confidence 99999999999999888776544333322 266777888899999999999999999987654321 11223355667
Q ss_pred CCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHh---cCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHH
Q 007863 329 SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL---LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 405 (587)
Q Consensus 329 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~---l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~ 405 (587)
+|.+..+-.-|+..+-.-+. +...+.++..+..+ +.|+..-|...+..+|... +.... ..+++.+.++
T Consensus 329 td~NrsIat~AITtLLKTG~----e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~---fp~k~--~~~m~FL~~~ 399 (865)
T KOG1078|consen 329 TDSNRSIATLAITTLLKTGT----ESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLK---FPRKH--TVMMNFLSNM 399 (865)
T ss_pred cccccchhHHHHHHHHHhcc----hhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhh---ccHHH--HHHHHHHHHH
Confidence 78777666666665554443 22333333333333 4455555555555554443 33222 3466666666
Q ss_pred hcC-CCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhh
Q 007863 406 AED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI 484 (587)
Q Consensus 406 ~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l 484 (587)
+.+ .....+...++.+..+....... +..-+..+-.++.|.. -+.-+...|..+.+.......-...+-.+.+..
T Consensus 400 Lr~eGg~e~K~aivd~Ii~iie~~pds--Ke~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRv 475 (865)
T KOG1078|consen 400 LREEGGFEFKRAIVDAIIDIIEENPDS--KERGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRV 475 (865)
T ss_pred HHhccCchHHHHHHHHHHHHHHhCcch--hhHHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchhhHHHhhhh
Confidence 544 45666777777776666532211 1112222223333322 223333444444332211111123333444443
Q ss_pred cCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHH
Q 007863 485 NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 542 (587)
Q Consensus 485 ~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~ 542 (587)
-=.+..+|.+|+.++.+++ .+.+...+.+...+.+++.|.+..||..|-..+..+-
T Consensus 476 iLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 476 ILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 3357789999999999988 3344446778888889999999999999988888776
No 78
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=4.1e-06 Score=82.14 Aligned_cols=329 Identities=16% Similarity=0.159 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh-cccCchhHHHHHHHHHHHHhcccChh
Q 007863 158 EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEEL-TQDDQDSVRLLAVEGCGALGKLLEPQ 236 (587)
Q Consensus 158 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l-~~d~~~~vr~~a~~~l~~l~~~~~~~ 236 (587)
++..+.+.|.+...+++..+.||+.|.-++..+.+... ...+..-.++..+ ..+.++..++.|.-.|... .++
T Consensus 129 ~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~--~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~----D~E 202 (948)
T KOG1058|consen 129 PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE--HLIPDAPELIESFLLTEQDPSCKRNAFLMLFTT----DPE 202 (948)
T ss_pred HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh--hhcCChHHHHHHHHHhccCchhHHHHHHHHHhc----CHH
Confidence 44566777888888888888898888888888877642 2222222223222 3344666666666555432 112
Q ss_pred hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH
Q 007863 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA 316 (587)
Q Consensus 237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 316 (587)
.-.+++...+.+ ..+-+........+.+...+..- .......+..+..++...++.|+..|+.++..++.. +. .
T Consensus 203 rAl~Yl~~~idq-i~~~~~~LqlViVE~Irkv~~~~--p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~--p~-a 276 (948)
T KOG1058|consen 203 RALNYLLSNIDQ-IPSFNDSLQLVIVELIRKVCLAN--PAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND--PT-A 276 (948)
T ss_pred HHHHHHHhhHhh-ccCccHHHHHHHHHHHHHHHhcC--HHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCC--HH-H
Confidence 112222222111 12223444555555555555421 111334667777777777788888877777666542 22 1
Q ss_pred HHhHHHHHhHhc-CCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHh
Q 007863 317 IQHILPCVKELS-SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS 395 (587)
Q Consensus 317 ~~~~~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~ 395 (587)
.......+.+++ +.++-+++.-...-+..+. ...+...+.+.--++..+..++-+||..++...-.+...-..+++.
T Consensus 277 lk~Aa~~~i~l~~kesdnnvklIvldrl~~l~--~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv 354 (948)
T KOG1058|consen 277 LKAAASTYIDLLVKESDNNVKLIVLDRLSELK--ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIV 354 (948)
T ss_pred HHHHHHHHHHHHHhccCcchhhhhHHHHHHHh--hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHH
Confidence 222333333333 2233345444444444443 1223344555555677888899999999887766666554433332
Q ss_pred hhhHHHHHHH---hcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhh
Q 007863 396 QSLLPAIVEL---AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA 472 (587)
Q Consensus 396 ~~~~~~l~~~---~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 472 (587)
+.+-..+.+- -.+.+...|...++.+...+-.++. +...++|.++.++.|.+...-...+..+....+.+..-
T Consensus 355 ~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L-- 430 (948)
T KOG1058|consen 355 QFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL-- 430 (948)
T ss_pred HHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH--
Confidence 2222222211 1345667899999999888765543 46778999999999999877777777777777665432
Q ss_pred hhchHHHHHhhhc-CCccHHHHHHHHHHHHhhc
Q 007863 473 MQHIVPQVLEMIN-NPHYLYRMTILQAISLLAP 504 (587)
Q Consensus 473 ~~~~~~~l~~~l~-~~~~~~r~~a~~~l~~l~~ 504 (587)
...++..+.+.+. -....+-.++++.+|..+.
T Consensus 431 r~~ii~~l~~~~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 431 RASIIEKLLETFPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred HHHHHHHHHHhhhhhcccccchhHHHHHHHHHh
Confidence 3334444443321 1233344566666666554
No 79
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.99 E-value=4e-06 Score=82.23 Aligned_cols=306 Identities=18% Similarity=0.184 Sum_probs=187.8
Q ss_pred chHHHHHHHHHHHHHHHHhCCCC---c-----ccchHHHHHHhcC-----C--ChHHHHHHHHHhHHHHHHhhCHHHH--
Q 007863 254 SWRVRYMVANQLYELCEAVGPEP---T-----RSDVVPAYVRLLR-----D--NEAEVRIAAAGKVTKICRILNPELA-- 316 (587)
Q Consensus 254 ~~~vR~~a~~~l~~l~~~~~~~~---~-----~~~l~~~l~~~l~-----d--~~~~vr~~a~~~l~~l~~~~~~~~~-- 316 (587)
+...-..++.++..+........ . ...++|.+.+... + .++.+-..+...+..+...++.+..
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45555666666666655443222 0 1125555555431 2 2356777777777888888777643
Q ss_pred -HHhHHHHHhH-----hcC-CCc--HHHHHHHHHHHHhhhhhhchHHH---HHhHHHHHHHh-cCCCChHHHHHHHHHhH
Q 007863 317 -IQHILPCVKE-----LSS-DSS--QHVRSALATVIMGMAPILGKDAT---IEQLLPIFLSL-LKDEFPDVRLNIISKLD 383 (587)
Q Consensus 317 -~~~~~~~l~~-----~~~-d~~--~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~-l~d~~~~vr~~a~~~l~ 383 (587)
.+.+...+.. -+. +.+ +.........+..+...+.++.. .+.++..+..+ .+..++..|..++..++
T Consensus 136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la 215 (415)
T PF12460_consen 136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLA 215 (415)
T ss_pred HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 2333333330 000 111 11111222222222222222211 12234444433 45556899999999999
Q ss_pred HhhhhhchhhHhhhhHHHHHHHh-cCCCcHHHHHHHHHHHHHHHhh--ChhhHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 007863 384 QVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLKDKVYSIRDAAANNV 460 (587)
Q Consensus 384 ~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 460 (587)
.++.....+...+.++..+.... .......|..+++.+..+.+.+ ........+...+..++.| +++...+++++
T Consensus 216 ~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f 293 (415)
T PF12460_consen 216 SLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAF 293 (415)
T ss_pred HHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHH
Confidence 99988765544445555554444 4455666777777777766654 1122245567777888877 77889999999
Q ss_pred HHHHHHhCh---------------hhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH---HHhHHHHHHhh
Q 007863 461 KRLAEEFGP---------------DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT---CSQLLPVVINA 522 (587)
Q Consensus 461 ~~l~~~~~~---------------~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~---~~~~l~~l~~~ 522 (587)
+.+...... ..+...++|.+.+...+.+...|...+.++..+.++++...+ .+.++|.++..
T Consensus 294 ~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqs 373 (415)
T PF12460_consen 294 GILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQS 373 (415)
T ss_pred hhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 888764211 113467888888887777777899999999999999887643 67899999999
Q ss_pred cCCCCccHHHHHHHHHHHHHhhhch--HHHHHhHHHHHHHh
Q 007863 523 SKDRVPNIKFNVAKVLQSLIPIVDQ--SVVEKSIRPCLVEL 561 (587)
Q Consensus 523 l~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l 561 (587)
+.-+++.+|..++.++..+...-+. ....+.++|.|.++
T Consensus 374 L~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 374 LSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 9989999999999999999877532 13445566666554
No 80
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.93 E-value=5.2e-06 Score=77.21 Aligned_cols=290 Identities=16% Similarity=0.109 Sum_probs=179.4
Q ss_pred hhHHHHHHHHHHHHhcccCh-hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcc----cch--HHHHHHh
Q 007863 216 DSVRLLAVEGCGALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR----SDV--VPAYVRL 288 (587)
Q Consensus 216 ~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~----~~l--~~~l~~~ 288 (587)
..+|..+...+..++.+++- ....-.+...+.....+..+.+...++.++.++....+.+..+ ..+ -++..-+
T Consensus 269 s~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~ 348 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMM 348 (728)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHH
Confidence 45888888888888887764 3345556677777778889999999999999988776632211 111 1122222
Q ss_pred cC--------CC-hHHHHHHHHHhHHHHHHhhCH--HHHHHhHHHHHhHhcCCC-cHHHHHHHHHHHHhhhhhhchH---
Q 007863 289 LR--------DN-EAEVRIAAAGKVTKICRILNP--ELAIQHILPCVKELSSDS-SQHVRSALATVIMGMAPILGKD--- 353 (587)
Q Consensus 289 l~--------d~-~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~--- 353 (587)
+. |+ .+....+.+.++.+++..-.. +.-.....+.+...+.|. +.-+|.+|.++++.+.-+-+..
T Consensus 349 l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~ 428 (728)
T KOG4535|consen 349 LNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDV 428 (728)
T ss_pred ccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhH
Confidence 21 11 233556666666666442110 000124556666666554 5568888888887765544422
Q ss_pred HHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch-----h----hHhhhhHHHHHHHh---cCCCcHHHHHHHHHH
Q 007863 354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-----D----LLSQSLLPAIVELA---EDRHWRVRLAIIEYI 421 (587)
Q Consensus 354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~-----~----~~~~~~~~~l~~~~---~~~~~~vr~~~~~~l 421 (587)
.+.......+...+.|..-.+|..++++++.|...+-. + .+....+....... .-.+.+||..+++.+
T Consensus 429 ~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraL 508 (728)
T KOG4535|consen 429 IFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRAL 508 (728)
T ss_pred HHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 23445556667778888889999999999999876521 1 12222232222221 235688999999999
Q ss_pred HHHHHhhChh---hHH----HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCh----hhhhhchHHHHHhhhcC-Ccc
Q 007863 422 PLLASQLGVG---FFD----DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP----DWAMQHIVPQVLEMINN-PHY 489 (587)
Q Consensus 422 ~~l~~~~~~~---~~~----~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~l~~-~~~ 489 (587)
+.+.+.+.+- .+. ..+...+..........||..++.+++++.++-.- ......++|.+..++.+ .|+
T Consensus 509 gnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NF 588 (728)
T KOG4535|consen 509 GNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNF 588 (728)
T ss_pred hhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccc
Confidence 9888765421 011 11122222223345678999999999999875322 12346778888877554 689
Q ss_pred HHHHHHHHHHHHhhcc
Q 007863 490 LYRMTILQAISLLAPV 505 (587)
Q Consensus 490 ~~r~~a~~~l~~l~~~ 505 (587)
.+|..|+.++..-.+-
T Consensus 589 KVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 589 KVRIRAAAALSVPGKR 604 (728)
T ss_pred eEeehhhhhhcCCCCc
Confidence 9999999998777653
No 81
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=3.7e-05 Score=75.55 Aligned_cols=161 Identities=15% Similarity=0.102 Sum_probs=112.8
Q ss_pred hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhc
Q 007863 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 475 (587)
Q Consensus 396 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 475 (587)
+..-|.|.+++.|.++-+|...+-.+..--..-|..-. +-.++--...|.+.+||.+|.-+||-++-. ...
T Consensus 518 e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnka---ir~lLh~aVsD~nDDVrRaAVialGFVl~~------dp~ 588 (929)
T KOG2062|consen 518 EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKA---IRRLLHVAVSDVNDDVRRAAVIALGFVLFR------DPE 588 (929)
T ss_pred hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhh---HHHhhcccccccchHHHHHHHHHheeeEec------Chh
Confidence 35667888889999999998876655433222233222 222333346899999999999999977632 234
Q ss_pred hHHHHHhhhc-CCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--HHHH
Q 007863 476 IVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEK 552 (587)
Q Consensus 476 ~~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~ 552 (587)
.+|...+++. +-|+.||..++.+++-.+..-|.. ..+..+..+..|++.-||+.|+-+++.|.-...+. +-..
T Consensus 589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~----eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~ 664 (929)
T KOG2062|consen 589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK----EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVN 664 (929)
T ss_pred hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH----HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHH
Confidence 5566666654 458999999999999988876654 56667777788999999999999998886443321 3335
Q ss_pred hHHHHHHHhcCCCCccH
Q 007863 553 SIRPCLVELSEDPDVDV 569 (587)
Q Consensus 553 ~i~~~l~~l~~d~~~~V 569 (587)
.+...+.+..+|+..++
T Consensus 665 ~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 665 GFRKQLEKVINDKHEDG 681 (929)
T ss_pred HHHHHHHHHhhhhhhHH
Confidence 56677777778877764
No 82
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=8.5e-05 Score=74.12 Aligned_cols=535 Identities=15% Similarity=0.134 Sum_probs=267.6
Q ss_pred CCcccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCc----CCc
Q 007863 6 EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYV----GGL 81 (587)
Q Consensus 6 ~~~~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~----~~~ 81 (587)
.+|..+...+..=-++|+.+|..|.++|...... ......++.++.+..- +...|.+++-.+.+.++.- ++.
T Consensus 2 ~~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q---~~y~l~lL~Lv~~~~~-d~~~r~aaav~fKN~iKr~W~~~~~~ 77 (960)
T KOG1992|consen 2 ANLETLANYLLQTLSPDPSVRKPAERALRSLEGQ---QNYPLLLLNLVANGQQ-DPQIRVAAAVYFKNYIKRNWIPAEDS 77 (960)
T ss_pred ccHHHHHHHHHhcCCCCCccCchHHHHHHHhccC---CCchHHHHHHHhccCc-ChhHHHHHHHHHHHHHHhccCcCCCC
Confidence 4566666666666678899999999999776322 1222344555554221 5567878887776665411 111
Q ss_pred ------chHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccC
Q 007863 82 ------EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPS 155 (587)
Q Consensus 82 ------~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~ 155 (587)
+....+...+..+.-+....++..-.+++..+++.--|+.+ +.++|.+..-..+.++.+-.+.....+.++++
T Consensus 78 ~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kW-ptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr 156 (960)
T KOG1992|consen 78 PIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKW-PTLLPDLVARLSSGDFNVINGVLVTAHSIFKR 156 (960)
T ss_pred ccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhh-HHHHHHHHhhccccchHHHHHHHHHHHHHHHh
Confidence 12345555666666677788999999999999987666554 45666665544444443333333333333332
Q ss_pred C-----CHHHH---HH--------HHHHHHH---hc--CCCCHHHHHHHHHHHHHHHHHHh--------h--hhhHHHHH
Q 007863 156 A-----PEALK---TE--------LRTIYRQ---LC--QDDMPMVRRSAATNLGKFAATVE--------A--AHLKSEIM 204 (587)
Q Consensus 156 ~-----~~~~~---~~--------l~~~l~~---l~--~~~~~~vR~~a~~~l~~l~~~~~--------~--~~~~~~i~ 204 (587)
. ++... +. +..++.+ ++ .+.+...-+.....+.-+++..- + ++..+..+
T Consensus 157 ~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM 236 (960)
T KOG1992|consen 157 YRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWM 236 (960)
T ss_pred cCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHH
Confidence 2 12211 11 1122221 11 11222211112222222222211 1 23344556
Q ss_pred HHHHHhcccCc-------------hhHHHHHHHHHHHHhcccChh--hhhhchHHHHHHhcCCCch-----HHHHHHHHH
Q 007863 205 SIFEELTQDDQ-------------DSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDKSW-----RVRYMVANQ 264 (587)
Q Consensus 205 ~~l~~l~~d~~-------------~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~-----~vR~~a~~~ 264 (587)
+.+.+++.-++ ..+|...++.+.-.....+++ .+.++++.....++.+.++ .....|.+.
T Consensus 237 ~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~F 316 (960)
T KOG1992|consen 237 GAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQF 316 (960)
T ss_pred HHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 66666655221 135556666655555443331 1233333333344443322 223344555
Q ss_pred HHHHHHHhCC-----------------------------CCcccchHHHHHHhcCCChHHH-HHHHHHhHHHHHHhhCHH
Q 007863 265 LYELCEAVGP-----------------------------EPTRSDVVPAYVRLLRDNEAEV-RIAAAGKVTKICRILNPE 314 (587)
Q Consensus 265 l~~l~~~~~~-----------------------------~~~~~~l~~~l~~~l~d~~~~v-r~~a~~~l~~l~~~~~~~ 314 (587)
|..++..-.. +...++-+..+.+-++..|.+. |.+|+..+..+++.+...
T Consensus 317 Lt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~ 396 (960)
T KOG1992|consen 317 LTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQ 396 (960)
T ss_pred HHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcch
Confidence 5555432110 1111224444555555444333 667888889999887443
Q ss_pred ---HHHHhHHHHHhHhcCCC--cHHHHHHHHHHHHhhhhhhc---------------hHHHHHhHHHHHHHhcCCCChHH
Q 007863 315 ---LAIQHILPCVKELSSDS--SQHVRSALATVIMGMAPILG---------------KDATIEQLLPIFLSLLKDEFPDV 374 (587)
Q Consensus 315 ---~~~~~~~~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~---------------~~~~~~~l~~~l~~~l~d~~~~v 374 (587)
.+...+-..+.+...++ +|+-+..++..+..++...+ .+.+...++|.+..--..+.|-+
T Consensus 397 vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pil 476 (960)
T KOG1992|consen 397 VTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPIL 476 (960)
T ss_pred hHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccch
Confidence 11222223333444454 68888888877777754321 12233445555543222345777
Q ss_pred HHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh--------hChhhHHHHHHHHHHHHc-
Q 007863 375 RLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ--------LGVGFFDDKLGALCMQWL- 445 (587)
Q Consensus 375 r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~--------~~~~~~~~~l~~~l~~~l- 445 (587)
+..++..+-.+-..+|+.... .++|.+.+.++.+..-+-.-+..++..+... ++++...+.+.+++..++
T Consensus 477 ka~aIKy~~~FR~ql~~~~lm-~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~ 555 (960)
T KOG1992|consen 477 KADAIKYIYTFRNQLGKEHLM-ALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFK 555 (960)
T ss_pred hhcccceeeeecccCChHHHH-HHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHH
Confidence 777777776666667766553 4788888888887777777677777665433 234444444444444443
Q ss_pred --CCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHh----hhcCCc-cHHHHHHHHHHHHhhcccChH------H
Q 007863 446 --KDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLE----MINNPH-YLYRMTILQAISLLAPVMGSE------I 510 (587)
Q Consensus 446 --~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~----~l~~~~-~~~r~~a~~~l~~l~~~~~~~------~ 510 (587)
.-+...--+-..+++-++........ +.+.++..+.+ ..++|+ +..-.--.+.++.+....+.. .
T Consensus 556 a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~ 635 (960)
T KOG1992|consen 556 ALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSS 635 (960)
T ss_pred hccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHH
Confidence 21111111222222322222111110 12233333333 344443 333333344444444322111 2
Q ss_pred HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhc
Q 007863 511 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 511 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~ 546 (587)
+...++|.+...+.....+.--.+...++.+++...
T Consensus 636 ~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~ 671 (960)
T KOG1992|consen 636 LEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSS 671 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456677777777766666666667777777766543
No 83
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.86 E-value=3.7e-06 Score=84.82 Aligned_cols=264 Identities=16% Similarity=0.138 Sum_probs=160.5
Q ss_pred cccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcC
Q 007863 211 TQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLR 290 (587)
Q Consensus 211 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 290 (587)
+.+.++..|..|++-+-.. +...+..+.++|-+.+.....+.++|+..--.+-.+++.-+... --.++.+.+=++
T Consensus 28 l~s~n~~~kidAmK~iIa~---M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--lLavNti~kDl~ 102 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQ---MSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--LLAVNTIQKDLQ 102 (757)
T ss_pred ccccChHHHHHHHHHHHHH---HhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHhhcc
Confidence 5555666666665543332 22222366777777777778899999998888777776533110 124677777789
Q ss_pred CChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHh-HHHHHHHhcCC
Q 007863 291 DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ-LLPIFLSLLKD 369 (587)
Q Consensus 291 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-l~~~l~~~l~d 369 (587)
|+++.+|..|++.++.+ +...+.+.+++.++++++|+++.||..|+-++..+... +++.+.+. ....+..++.|
T Consensus 103 d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~~~l~~l~~D 177 (757)
T COG5096 103 DPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELGLIDILKELVAD 177 (757)
T ss_pred CCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcccHHHHHHHHhhC
Confidence 99999999999999887 44566688999999999999999999999999888643 33334444 56677788899
Q ss_pred CChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHh---cCCC-cHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHc
Q 007863 370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA---EDRH-WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 445 (587)
Q Consensus 370 ~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~---~~~~-~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 445 (587)
++|.|...|+.++..+...... .+...+...+.++. .+.. ...+...++.+..-...... -...+...+....
T Consensus 178 ~dP~Vi~nAl~sl~~i~~e~a~-~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~--s~~~~~~~~~~~~ 254 (757)
T COG5096 178 SDPIVIANALASLAEIDPELAH-GYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPD--SAEDFEERLSPPL 254 (757)
T ss_pred CCchHHHHHHHHHHHhchhhhh-hHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCC--cHHHHHHhccchh
Confidence 9999999999999998765111 11111111111111 1110 22222222222211111111 0112222233334
Q ss_pred CCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCC
Q 007863 446 KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP 487 (587)
Q Consensus 446 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~ 487 (587)
+..+..+-..++..+-.+........+.....|.+..++..+
T Consensus 255 ~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~ 296 (757)
T COG5096 255 QHNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKP 296 (757)
T ss_pred hhCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCC
Confidence 566777777777777776665555444444555555554443
No 84
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=3.8e-05 Score=76.51 Aligned_cols=389 Identities=15% Similarity=0.161 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhh
Q 007863 158 EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD 237 (587)
Q Consensus 158 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~ 237 (587)
++.++.+...+..++-+....++....++++.+++. .-+.-|+.++|-+..-++..+-.+-.+....-.++.+....+.
T Consensus 83 ~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~-DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~ef 161 (960)
T KOG1992|consen 83 EEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKR-DFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEF 161 (960)
T ss_pred hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcc-ccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCccc
Confidence 345666777777777777788998888888877653 1246788899988888887766555444444455555544332
Q ss_pred hhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhc--CCChHHHHHHHHHhHHHHHH---hhC
Q 007863 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL--RDNEAEVRIAAAGKVTKICR---ILN 312 (587)
Q Consensus 238 ~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~---~~~ 312 (587)
..+.+.--++. +|+.++..+ .+++....++. .+++...-..-...+--+++ .+.
T Consensus 162 rSdaL~~EIK~---------------vLd~f~~Pl------t~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn 220 (960)
T KOG1992|consen 162 RSDALWLEIKL---------------VLDRFAEPL------TDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLN 220 (960)
T ss_pred ccHHHHHHHHH---------------HHHhhHhHH------HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhh
Confidence 22222211111 111111110 00000011111 11111100000111111111 110
Q ss_pred ----HH---HHHHhHHHHHhHhcCC---------Cc----HHHHHHHHHHHHhhhhhhchH--HHHHhHHHHHHHhcCCC
Q 007863 313 ----PE---LAIQHILPCVKELSSD---------SS----QHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDE 370 (587)
Q Consensus 313 ----~~---~~~~~~~~~l~~~~~d---------~~----~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~ 370 (587)
++ +..+.-++.+.++++- .+ ..+|...|+.+.-.+.....+ .+.+.++...+.++.+.
T Consensus 221 ~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~ 300 (960)
T KOG1992|consen 221 FQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVST 300 (960)
T ss_pred cccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhc
Confidence 11 2223445555555431 11 356777777766555443322 23455555666777665
Q ss_pred ChHHHH-----HHHHHhHHhhhhhchhh--HhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHH
Q 007863 371 FPDVRL-----NIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ 443 (587)
Q Consensus 371 ~~~vr~-----~a~~~l~~i~~~~~~~~--~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ 443 (587)
.+..|. .|...|..++..-.-.. -.+.++..+.+...=+|...|..-- +.|.+.-+..+-+
T Consensus 301 s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDe------------ElFED~pleYiRR 368 (960)
T KOG1992|consen 301 SPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDE------------ELFEDNPLEYIRR 368 (960)
T ss_pred CCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhH------------HHhccCHHHHHHH
Confidence 554443 44445555443211110 0123344444333334433333322 2223333444445
Q ss_pred HcCCCc-hHHHHHHHHHHHHHHHHhChhhhhhchHHHHHh----hhcCC--ccHHHHHHHHHHHHhhcccC---------
Q 007863 444 WLKDKV-YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE----MINNP--HYLYRMTILQAISLLAPVMG--------- 507 (587)
Q Consensus 444 ~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~----~l~~~--~~~~r~~a~~~l~~l~~~~~--------- 507 (587)
-+.-.+ ..=|..|+..++.+++.+... ....+-..+.. ...+| ||..+..++..+..++...+
T Consensus 369 DlEGsDvdTRRR~a~dlvrgL~~~fe~~-vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtst 447 (960)
T KOG1992|consen 369 DLEGSDVDTRRRAAIDLVRGLCKNFEGQ-VTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTST 447 (960)
T ss_pred hcccCCcchhHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeec
Confidence 454333 345788899999999988543 22222222222 33444 89999999998888875321
Q ss_pred ------hHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863 508 ------SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 508 ------~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~ 581 (587)
.+.+...++|.+..--..+.|.+|..+++-+...-..+++. +.-.++|.+...+.-+..-|-..|+.++.++-
T Consensus 448 n~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~-~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil 526 (960)
T KOG1992|consen 448 NELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKE-HLMALLPRLIRFLEAESRVVHSYAAIAIEKLL 526 (960)
T ss_pred cccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChH-HHHHHHHHHHHhccCcchHHHHHHHHHHHhcc
Confidence 12456778888776555678899998888887776666654 34578888888888888889999999988764
Q ss_pred H
Q 007863 582 Q 582 (587)
Q Consensus 582 ~ 582 (587)
.
T Consensus 527 ~ 527 (960)
T KOG1992|consen 527 T 527 (960)
T ss_pred c
Confidence 3
No 85
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.84 E-value=4.3e-06 Score=77.73 Aligned_cols=493 Identities=11% Similarity=0.101 Sum_probs=241.6
Q ss_pred hcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCCcchHhhhhhHHHhhhcC
Q 007863 18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTV 97 (587)
Q Consensus 18 l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~ 97 (587)
+.+...++|..|+..+.+..+.+.... +..+..-.+-+.+ -.|. +.+ +.--+.|
T Consensus 5 ~r~~~akvr~~al~~~~~~~~~~~~~~----~ygyw~~~~pd~~---------------~~g~----p~l---~~l~lkd 58 (728)
T KOG4535|consen 5 MRSYQAKVRQGALVCFLSTIKSIEKKV----LYGYWSAFIPDTP---------------ELGS----PSL---MTLTLKD 58 (728)
T ss_pred hhhHHHHHHhhHHHHHHHHHhhhhhhh----hhceeeeecCCCC---------------CCCC----cee---eEEecCC
Confidence 456678899999988887765543222 2222221111111 1121 111 1112478
Q ss_pred chhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcch--hhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCC
Q 007863 98 EETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTAR--VSSCGLFHVAYPSAPEALKTELRTIYRQLCQDD 175 (587)
Q Consensus 98 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r--~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~ 175 (587)
+++.-|.-|.+.+..+.... +.++........+ +++.- ..|+.+ +....-++..+....
T Consensus 59 ~~~~~ra~alqv~~~~l~gs------k~fls~a~~~~~~-~ftpf~v~~a~si------------~~~~r~l~~~l~~e~ 119 (728)
T KOG4535|consen 59 PSPKTRACALQVLSAILEGS------KQFLSVAEDTSDH-AFTPFSVMIACSI------------RELHRCLLLALVAES 119 (728)
T ss_pred CChhHHHHHHHHHHHHHHhh------HHHHHHHhccCCc-CCCchHHHHHHHH------------HHHHHHHHHHHHHhc
Confidence 89999998888888776431 1222222211111 22111 111111 111122223344445
Q ss_pred CHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh----------------
Q 007863 176 MPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---------------- 235 (587)
Q Consensus 176 ~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---------------- 235 (587)
++.+-..+.++|..++...+-. .+.-++...+..++.+.++.||..+.-.++.+...-..
T Consensus 120 ~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n 199 (728)
T KOG4535|consen 120 SSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSN 199 (728)
T ss_pred CchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCcccc
Confidence 5666777777777777655431 23344555666778888888888888877776433110
Q ss_pred --------hhhhhc-----------------------h-------HHH----------HHHhcCC--CchHHHHHHHHHH
Q 007863 236 --------QDCVAH-----------------------I-------LPV----------IVNFSQD--KSWRVRYMVANQL 265 (587)
Q Consensus 236 --------~~~~~~-----------------------l-------~~~----------l~~~~~d--~~~~vR~~a~~~l 265 (587)
.+.+.. + .+. ....... ....+|..+.+.|
T Consensus 200 ~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl 279 (728)
T KOG4535|consen 200 SATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVL 279 (728)
T ss_pred ccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHH
Confidence 000000 0 000 0111111 1235788888888
Q ss_pred HHHHHHhCC-CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----HHHHh-----HHHHHh-----Hhc-C
Q 007863 266 YELCEAVGP-EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQH-----ILPCVK-----ELS-S 329 (587)
Q Consensus 266 ~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~-----~~~~l~-----~~~-~ 329 (587)
..++.+++- ....-.+...+...+.+..+.++..+...+..++..++.+ .+... ++-.+. ... .
T Consensus 280 ~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YD 359 (728)
T KOG4535|consen 280 TLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYD 359 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhh
Confidence 888877652 1112245556666778889999999999999888876532 11111 111111 111 1
Q ss_pred CCcHHHHHHHHHHHHhhhhhh--chHHHHHhHHHHHHHhcCCCC-hHHHHHHHHHhHHhhhhhchhh---HhhhhHHHHH
Q 007863 330 DSSQHVRSALATVIMGMAPIL--GKDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDL---LSQSLLPAIV 403 (587)
Q Consensus 330 d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~i~~~~~~~~---~~~~~~~~l~ 403 (587)
........++|.++..+.... +.+.......+.+.....|.. .-|+.+|.+++....-+-+... +.......+.
T Consensus 360 s~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il 439 (728)
T KOG4535|consen 360 SEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAIL 439 (728)
T ss_pred hcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHH
Confidence 223456777777777775432 111112344566666666553 3356666666555442222110 0111112222
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhh
Q 007863 404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM 483 (587)
Q Consensus 404 ~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ 483 (587)
..+.|+....|..+...++.+.. .+-+..+.+|..+....|.+.... +..-. .
T Consensus 440 ~sl~d~~ln~r~KaawtlgnITd-----------------AL~~~~Ps~~s~~eR~sg~ll~~~---------~~~A~-~ 492 (728)
T KOG4535|consen 440 MSLEDKSLNVRAKAAWSLGNITD-----------------ALIVNMPTPDSFQERFSGLLLLKM---------LRSAI-E 492 (728)
T ss_pred HHhhhHhHhHHHHHHHHhhhhHH-----------------HHHcCCCCchHHHHHHHHHHHHHH---------HHHHH-H
Confidence 22233333333333333322222 222333344444444443333210 10000 0
Q ss_pred hcCCccHHHHHHHHHHHHhhcccChH--HHHHhHHHH-----HHhhcCCCCccHHHHHHHHHHHHHhhh----chHHHHH
Q 007863 484 INNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPV-----VINASKDRVPNIKFNVAKVLQSLIPIV----DQSVVEK 552 (587)
Q Consensus 484 l~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~-----l~~~l~d~~~~vR~~a~~~l~~l~~~~----~~~~~~~ 552 (587)
..-.+++||..+..+++++.+.+.+- .....++.. +-.........||.+++.++++++++- .......
T Consensus 493 ~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~ 572 (728)
T KOG4535|consen 493 ASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWAS 572 (728)
T ss_pred hhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchH
Confidence 11125668888888888877654311 011112111 111122346778888888888887652 2335666
Q ss_pred hHHHHHHHhcCC-CCccHHHHHHHHHHHHHH
Q 007863 553 SIRPCLVELSED-PDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 553 ~i~~~l~~l~~d-~~~~Vr~~a~~al~~l~~ 582 (587)
.++++|..+..| .+-.||.+|+.+|....+
T Consensus 573 ~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 573 QAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred HHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 778888776554 566788888888765443
No 86
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=0.00016 Score=70.84 Aligned_cols=450 Identities=14% Similarity=0.099 Sum_probs=228.8
Q ss_pred chHHHHHHHHHhcccccCcCCcchHhhhhhHHHhhhc--CchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCC
Q 007863 60 DDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCT--VEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGE 137 (587)
Q Consensus 60 ~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~ 137 (587)
++.-...+..+++++ |+-+....+.+-+.+++. +....||+.|+-++..+.+..++-.-...+..-+..+.+|+
T Consensus 124 n~~fv~LAL~~I~ni----G~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~ 199 (938)
T KOG1077|consen 124 NPTFVCLALHCIANI----GSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQ 199 (938)
T ss_pred CcHHHHHHHHHHHhh----ccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCcc
Confidence 333334444565655 655555556666666654 45689999999999999988543222234556677778888
Q ss_pred CCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchh
Q 007863 138 WFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDS 217 (587)
Q Consensus 138 ~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~ 217 (587)
+..+-.++..++..+..+.++.+..-+.+.+..+.. .|+...........-..+.+-..-.++.++..+-..+++.
T Consensus 200 ~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~r----iv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~ 275 (938)
T KOG1077|consen 200 HMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSR----IVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPS 275 (938)
T ss_pred ccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHH----HHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCch
Confidence 888888888888888887776655444433333211 0000000000000011112222333455555554556677
Q ss_pred HHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC-cccchHHHHHHhcCCChHHH
Q 007863 218 VRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYVRLLRDNEAEV 296 (587)
Q Consensus 218 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~v 296 (587)
+|..-.+++..+.....+......+. ...++.+..--.-+++..+..+. .....+..+-+++.+.+.++
T Consensus 276 ~r~~l~evl~~iLnk~~~~~~~k~vq----------~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~Ni 345 (938)
T KOG1077|consen 276 TRARLNEVLERILNKAQEPPKSKKVQ----------HSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNI 345 (938)
T ss_pred HHHHHHHHHHHHHhccccCccccchH----------hhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccc
Confidence 88877777777665443200000000 00111111111111222222110 11123344455667788889
Q ss_pred HHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcC-CCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHH
Q 007863 297 RIAAAGKVTKICRILNPELAIQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVR 375 (587)
Q Consensus 297 r~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr 375 (587)
|.-+++.+..++..-......+.-...+...++ +.+..+|+.+++.+..++..-. ...++.-+++.+...+..+|
T Consensus 346 RYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~N----ak~IV~elLqYL~tAd~sir 421 (938)
T KOG1077|consen 346 RYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSN----AKQIVAELLQYLETADYSIR 421 (938)
T ss_pred hhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhh----HHHHHHHHHHHHhhcchHHH
Confidence 999999888887752222222333455555555 8889999999999988885533 33455556666666788899
Q ss_pred HHHHHHhHHhhhhhchhhHhhhhHHHHHHHh---cC-CCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCC--c
Q 007863 376 LNIISKLDQVNQVIGIDLLSQSLLPAIVELA---ED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDK--V 449 (587)
Q Consensus 376 ~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~---~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~ 449 (587)
...+.-.+-+++.+..+. ...+..+.+++ .| -+.++....++.+ .+.+....+-..-+...++.+ .
T Consensus 422 eeivlKvAILaEKyAtDy--~WyVdviLqLiriagd~vsdeVW~RvvQiV------vNnedlq~yaak~~fe~Lq~~a~h 493 (938)
T KOG1077|consen 422 EEIVLKVAILAEKYATDY--SWYVDVILQLIRIAGDYVSDEVWYRVVQIV------VNNEDLQGYAAKRLFEYLQKPACH 493 (938)
T ss_pred HHHHHHHHHHHHHhcCCc--chhHHHHHHHHHHhcccccHHHHHHhheeE------ecchhhhHHHHHHHHHHHhhhHHH
Confidence 888888887777766542 12233332222 22 1222222222111 122222222223333333322 1
Q ss_pred hHHHHHHHHHHHHHHHHhChhhh--hhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCC
Q 007863 450 YSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRV 527 (587)
Q Consensus 450 ~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~ 527 (587)
..+.+.+.-.||++...+..+.. ....+..+-+-+..-....|...+.....+....+ + ....+...+....+-.+
T Consensus 494 E~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~P-E-i~~~v~~vFq~~~n~~D 571 (938)
T KOG1077|consen 494 ENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFP-E-IKSNVQKVFQLYSNLID 571 (938)
T ss_pred HHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhCh-h-hhHHHHHHHHhhcccCC
Confidence 22334444445554443333210 01122222222333345566666666666655432 1 23444444444455567
Q ss_pred ccHHHHHHHHHHHH
Q 007863 528 PNIKFNVAKVLQSL 541 (587)
Q Consensus 528 ~~vR~~a~~~l~~l 541 (587)
.++...+++-|...
T Consensus 572 ~ElQqRa~EYLql~ 585 (938)
T KOG1077|consen 572 VELQQRAVEYLQLS 585 (938)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888876544
No 87
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.83 E-value=1.8e-06 Score=88.68 Aligned_cols=198 Identities=18% Similarity=0.224 Sum_probs=159.1
Q ss_pred hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC--CCC-cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC
Q 007863 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEP-TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN 312 (587)
Q Consensus 236 ~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~--~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 312 (587)
..+.+.+-+.+...+.+++|+-|..+++.+..+...-+ ... ....+...+.....|.+..|-..++..|..++..++
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence 34455677778888899999999999999988887655 111 122344555556789999999999999999999888
Q ss_pred HH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhc
Q 007863 313 PE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 390 (587)
Q Consensus 313 ~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~ 390 (587)
.. .+...++|.+.+.+.+....+|.++..++..++...+ ...+.+.+..++++.+|.+|..+...+......++
T Consensus 328 ~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~ 403 (815)
T KOG1820|consen 328 PLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLG 403 (815)
T ss_pred hhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcC
Confidence 76 4566788999999999999999999999988876433 45567888899999999999999999998887776
Q ss_pred h----hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHH
Q 007863 391 I----DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 437 (587)
Q Consensus 391 ~----~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 437 (587)
. ......+.|.+....+|.+..||.++.+.++.+.+.+|.+.+...+
T Consensus 404 ~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L 454 (815)
T KOG1820|consen 404 PKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLL 454 (815)
T ss_pred CcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 2 2334678899999999999999999999999999999877665443
No 88
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.78 E-value=8.9e-08 Score=70.86 Aligned_cols=88 Identities=24% Similarity=0.359 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhhcccChH--HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCCC
Q 007863 491 YRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPD 566 (587)
Q Consensus 491 ~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~ 566 (587)
.|.+++.++..++..++.. .+.+.++|.++.+++|+++.||..|+++|.++.+..... .+...+++.|.++..|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4778888888888777654 478899999999999999999999999999998887664 345788999999999999
Q ss_pred ccHHHHHHHHHHH
Q 007863 567 VDVRFFATQALQS 579 (587)
Q Consensus 567 ~~Vr~~a~~al~~ 579 (587)
++||..| +.|.+
T Consensus 82 ~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 82 ENVRSAA-ELLDR 93 (97)
T ss_pred hhHHHHH-HHHHH
Confidence 9999887 44443
No 89
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.76 E-value=1.2e-06 Score=86.18 Aligned_cols=231 Identities=18% Similarity=0.293 Sum_probs=155.2
Q ss_pred cHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhc-CCC
Q 007863 332 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRH 410 (587)
Q Consensus 332 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~-~~~ 410 (587)
+..-+....+.|..+...++.......++|.+...+.+. ...-...-.+-.|.+.....++...++|.|...++ ..+
T Consensus 286 dn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~ 363 (700)
T KOG2137|consen 286 DNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDP 363 (700)
T ss_pred CcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCc
Confidence 344556666677777777777777777777777666443 11112222223333333444555677777777766 456
Q ss_pred cHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhh-hcCCcc
Q 007863 411 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM-INNPHY 489 (587)
Q Consensus 411 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~ 489 (587)
.+++...++.+..+.+....+.+.++++|++...++|.+..+.+.+++.+..+.+.+...+..+.++|.+.++ +...+.
T Consensus 364 ~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~ 443 (700)
T KOG2137|consen 364 KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNL 443 (700)
T ss_pred ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccch
Confidence 6777778888888888888888888888888888888888888888888888888877776778888888776 455667
Q ss_pred HHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhc--hHHHHHhHHHHHHHhcCCC
Q 007863 490 LYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSVVEKSIRPCLVELSEDP 565 (587)
Q Consensus 490 ~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~i~~~l~~l~~d~ 565 (587)
.++..++.|++.+.+.+...-..+.++|.+.. .+..++.+-...+.+...+.-... .+...+.++|.+..+..-+
T Consensus 444 ~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~-~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 444 YVKVNVLPCLAGLIQRLDKAAVLDELLPILKC-IKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 78888888888888766655455555555444 444566777666666665543322 2455667777777764433
No 90
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.75 E-value=0.00015 Score=71.30 Aligned_cols=202 Identities=13% Similarity=0.154 Sum_probs=120.4
Q ss_pred HHHHHHHHHhCCCCcccc---hHHHHHHh-cCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhc-CCCcHHHHH
Q 007863 263 NQLYELCEAVGPEPTRSD---VVPAYVRL-LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS-SDSSQHVRS 337 (587)
Q Consensus 263 ~~l~~l~~~~~~~~~~~~---l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~-~d~~~~vr~ 337 (587)
-.+..+...+.++...+. ++..+..+ .+..++..|..+++.++.+.+.+..+...+.++..+.... .......|.
T Consensus 169 ~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 248 (415)
T PF12460_consen 169 ILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRP 248 (415)
T ss_pred HHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhH
Confidence 334444444544433222 44444443 3444589999999999999998766654455566555444 445556666
Q ss_pred HHHHHHHhhhhhh--chHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhc---------------hhhHhhhhHH
Q 007863 338 ALATVIMGMAPIL--GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---------------IDLLSQSLLP 400 (587)
Q Consensus 338 ~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~---------------~~~~~~~~~~ 400 (587)
.+...+.-+++.. -.......++..+..++.| +++...++.+++-+..... .+.+-..++|
T Consensus 249 ~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p 326 (415)
T PF12460_consen 249 QALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLP 326 (415)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHH
Confidence 7776666665543 1222334566777778877 6788888888888775521 1122234555
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHH---HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Q 007863 401 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (587)
Q Consensus 401 ~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 466 (587)
.+.+..++.+...|...+.++..+.+..+.+.+. +.++|++++.+.-++.+++..++.++..+...
T Consensus 327 ~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 327 KLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred HHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 5555555554446666666666666666554443 34566666666666666666666666666553
No 91
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.73 E-value=0.00032 Score=71.28 Aligned_cols=183 Identities=16% Similarity=0.117 Sum_probs=119.5
Q ss_pred hhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccC------------
Q 007863 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPS------------ 155 (587)
Q Consensus 88 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~------------ 155 (587)
..++-.-+-|..+.||..|+..+..+.+..+.-. ...++..+.+...|+.+.++.++..++..-..-
T Consensus 474 ~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~-~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~ 552 (1529)
T KOG0413|consen 474 YNIVYMRCLDKAAAVRLHALNSLTKILQLQSHRE-AFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLL 552 (1529)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccc-hHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhcC
Confidence 3445555678899999999999998877654321 223444444444444444444433322111100
Q ss_pred ----------------CCHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhH
Q 007863 156 ----------------APEALKTELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSV 218 (587)
Q Consensus 156 ----------------~~~~~~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~v 218 (587)
+.....+.++.++..... |+-..||+.+++.+.....+...+...+..+-++..++.|+-..|
T Consensus 553 ~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsv 632 (1529)
T KOG0413|consen 553 DEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSV 632 (1529)
T ss_pred cchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHH
Confidence 000123445555555544 666789999999999998888887778888999999999999999
Q ss_pred HHHHHHHHHHHhcccCh-hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 007863 219 RLLAVEGCGALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (587)
Q Consensus 219 r~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~ 271 (587)
|..++..|+.+.-.-+. -.....-+-.+...+.|....|...|...+..+...
T Consensus 633 rk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p 686 (1529)
T KOG0413|consen 633 RKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTP 686 (1529)
T ss_pred HHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhh
Confidence 99999888887654332 122233346667778898889999998877776543
No 92
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.72 E-value=2.5e-07 Score=68.52 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=66.5
Q ss_pred HHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHH--HHHhHHHHHHHhcCCCC
Q 007863 296 VRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEF 371 (587)
Q Consensus 296 vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~ 371 (587)
.|++++-+|..++..++.. .+.+.++|.+...++|++++||..+++++..+++..+.+. +...+++.+.+++.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4778888888888777765 5668888888899999999999999999999887776443 35667788888888988
Q ss_pred hHHHHHH
Q 007863 372 PDVRLNI 378 (587)
Q Consensus 372 ~~vr~~a 378 (587)
+.||.++
T Consensus 82 ~~Vr~~a 88 (97)
T PF12755_consen 82 ENVRSAA 88 (97)
T ss_pred hhHHHHH
Confidence 8888776
No 93
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.67 E-value=0.0001 Score=75.40 Aligned_cols=368 Identities=15% Similarity=0.178 Sum_probs=214.6
Q ss_pred HHHHhcccCchhHHHHHHHHHHHHhcccCh--hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC--CCcccch
Q 007863 206 IFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDV 281 (587)
Q Consensus 206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l 281 (587)
.+..++...+.-.| .+...|..+++...- ......+++.+.+++...+..+...+...|.+++-.-.. ......+
T Consensus 254 k~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~gi 332 (708)
T PF05804_consen 254 KLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGI 332 (708)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 33344444333333 566677777765432 223466888899999988999999999988887643211 2224468
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc--hHHHHH
Q 007863 282 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--KDATIE 357 (587)
Q Consensus 282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~ 357 (587)
++.+.+++..++..++..+++.|.+++-.-.. .-....++|.+..++.+++ .|..+...+..++..-. ......
T Consensus 333 V~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~T 410 (708)
T PF05804_consen 333 VEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYT 410 (708)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhc
Confidence 99999999999899999999999988653221 2233457888999998765 44556666666653211 111223
Q ss_pred hHHHHHHHhc-CCCChHHHHHHHHHhHHhhhhhchh-hH-hhhhHHHHHHH-hcCCCcHHHHHHHHHHHHHHHhhCh--h
Q 007863 358 QLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGID-LL-SQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGV--G 431 (587)
Q Consensus 358 ~l~~~l~~~l-~d~~~~vr~~a~~~l~~i~~~~~~~-~~-~~~~~~~l~~~-~~~~~~~vr~~~~~~l~~l~~~~~~--~ 431 (587)
..+|.+.+++ ..+++.+...++..+-.++..-..- .+ ....++.+.+. ++..+ ...++.+..++.+-|+ .
T Consensus 411 dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~~~~k~ 486 (708)
T PF05804_consen 411 DCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD----PLLLKLIRNISQHDGPLKE 486 (708)
T ss_pred chHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcCchHHH
Confidence 4567776654 3345556554444444333221110 00 01223333322 22222 1233444444444322 1
Q ss_pred hHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh--Chhh--h--hhchHHHHHhhhcCC--ccHHHHHHHHHHHHhh
Q 007863 432 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF--GPDW--A--MQHIVPQVLEMINNP--HYLYRMTILQAISLLA 503 (587)
Q Consensus 432 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~--~--~~~~~~~l~~~l~~~--~~~~r~~a~~~l~~l~ 503 (587)
.|.+++.+++-......+.+ ..++++|.+...- +.++ + ...++|.+.+.+..+ ...+...++..+|.++
T Consensus 487 ~f~~~i~~L~~~v~~~~~ee---~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla 563 (708)
T PF05804_consen 487 LFVDFIGDLAKIVSSGDSEE---FVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA 563 (708)
T ss_pred HHHHHHHHHHHHhhcCCcHH---HHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence 23344444433333333444 4555555555422 2222 2 247899999887654 3356667777777776
Q ss_pred cccChHH--HHHhHHHHHHhhcCCC--CccHHHHHHHHHHHHHhhhchH-H--HHHhHHHHHHHhcCCCCccHHHHHHHH
Q 007863 504 PVMGSEI--TCSQLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQS-V--VEKSIRPCLVELSEDPDVDVRFFATQA 576 (587)
Q Consensus 504 ~~~~~~~--~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~~-~--~~~~i~~~l~~l~~d~~~~Vr~~a~~a 576 (587)
..-.... ....+++.+..++++. +.+.-...+.++.++..+-... . ....+..-|..++.|+++.||..+-.+
T Consensus 564 ~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~ 643 (708)
T PF05804_consen 564 SDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNA 643 (708)
T ss_pred CCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHH
Confidence 5322222 2456788888887664 4666667777777776552221 1 124577788889999999999999999
Q ss_pred HHHHHHH
Q 007863 577 LQSKDQV 583 (587)
Q Consensus 577 l~~l~~~ 583 (587)
|+-+++.
T Consensus 644 Ldii~e~ 650 (708)
T PF05804_consen 644 LDIIAEY 650 (708)
T ss_pred HHHHHHh
Confidence 9988875
No 94
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.67 E-value=4e-05 Score=78.20 Aligned_cols=368 Identities=15% Similarity=0.154 Sum_probs=217.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh--hhhhhc
Q 007863 166 TIYRQLCQDDMPMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAH 241 (587)
Q Consensus 166 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~ 241 (587)
..+..++...+.-.| .+...|.+++.....+ -....+++.+.++++.++..+...++..|.+++-.-.. ......
T Consensus 253 kk~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~g 331 (708)
T PF05804_consen 253 KKLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESG 331 (708)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 344444455544555 4556677776654321 23345778888888888888888888998887644322 334566
Q ss_pred hHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC--CCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHH
Q 007863 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAI 317 (587)
Q Consensus 242 l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~ 317 (587)
+++.+.+++..++..++..+++.|.+++..-. .......++|.+..+++|++ .+..++..|..++..-... ...
T Consensus 332 iV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~ 409 (708)
T PF05804_consen 332 IVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAY 409 (708)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhh
Confidence 89999999999999999999999998864321 12233468899999998764 5566777777776521111 112
Q ss_pred HhHHHHHhHhc-CCCcHHHHHHHHHHHHhhhhhhchHH--HHHhHHHHHH-HhcCCCChHHHHHHHHHhHHhhhhhchh-
Q 007863 318 QHILPCVKELS-SDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGID- 392 (587)
Q Consensus 318 ~~~~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~-~~l~d~~~~vr~~a~~~l~~i~~~~~~~- 392 (587)
...+|.+.+++ ..++..+...++..+..++..-.... .....++.+. ..++..++- .+..+..++.+-|+.
T Consensus 410 TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k 485 (708)
T PF05804_consen 410 TDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLK 485 (708)
T ss_pred cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHH
Confidence 34567776654 44566666655555555543321111 1112233333 333333322 223444444443322
Q ss_pred -hHhhhhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhh----ChhhHH--HHHHHHHHHHcCCC--chHHHHHHHHHHHH
Q 007863 393 -LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQL----GVGFFD--DKLGALCMQWLKDK--VYSIRDAAANNVKR 462 (587)
Q Consensus 393 -~~~~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~----~~~~~~--~~l~~~l~~~l~d~--~~~vr~~a~~~l~~ 462 (587)
.+.+ ++..+...+.. +++. ..++++|.++..- +...+. -.++|.+.+.+... ..++...++..+|.
T Consensus 486 ~~f~~-~i~~L~~~v~~~~~ee---~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gt 561 (708)
T PF05804_consen 486 ELFVD-FIGDLAKIVSSGDSEE---FVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGT 561 (708)
T ss_pred HHHHH-HHHHHHHHhhcCCcHH---HHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHH
Confidence 1222 33333333433 3444 4555566555532 122222 25788888887543 34688888888888
Q ss_pred HHHHhChh--hhhhchHHHHHhhhcCC--ccHHHHHHHHHHHHhhcccC-hHHH--HHhHHHHHHhhcCCCCccHHHHHH
Q 007863 463 LAEEFGPD--WAMQHIVPQVLEMINNP--HYLYRMTILQAISLLAPVMG-SEIT--CSQLLPVVINASKDRVPNIKFNVA 535 (587)
Q Consensus 463 l~~~~~~~--~~~~~~~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~~~-~~~~--~~~~l~~l~~~l~d~~~~vR~~a~ 535 (587)
++..-... .....+++.+.++++.. +.+.-...+.++.++..+-. .+.+ ...+...++.+++|+++.||..+-
T Consensus 562 la~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d 641 (708)
T PF05804_consen 562 LASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCD 641 (708)
T ss_pred HHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHH
Confidence 77532111 12467788888877554 35555566677777765421 1212 245777899999999999999999
Q ss_pred HHHHHHHhh
Q 007863 536 KVLQSLIPI 544 (587)
Q Consensus 536 ~~l~~l~~~ 544 (587)
.+|..+...
T Consensus 642 ~~Ldii~e~ 650 (708)
T PF05804_consen 642 NALDIIAEY 650 (708)
T ss_pred HHHHHHHHh
Confidence 999877654
No 95
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.66 E-value=0.00025 Score=69.19 Aligned_cols=404 Identities=14% Similarity=0.081 Sum_probs=216.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhcccCc-hhHHHHHHHHHHHHhcccChh-----hhhhchH
Q 007863 173 QDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQ-DSVRLLAVEGCGALGKLLEPQ-----DCVAHIL 243 (587)
Q Consensus 173 ~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~~~-----~~~~~l~ 243 (587)
+++.+......+..++.++..-.. +......++.+.+++.+.+ ..++....+++..+.+..+.. .....++
T Consensus 63 e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi 142 (678)
T KOG1293|consen 63 EDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSII 142 (678)
T ss_pred cCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHH
Confidence 344556666666666666543322 2233345666777887777 789999999999988776432 1233455
Q ss_pred HHHHHhcC-CCchHHHHHHHHHHHHHHHHhCCCC-----cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---
Q 007863 244 PVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP-----TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--- 314 (587)
Q Consensus 244 ~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--- 314 (587)
+.+..+.+ ......+..+.. ++...+... ....+...+.-++.-.+..+|.+|+.++.+....+-.+
T Consensus 143 ~~~s~l~s~~lk~~~~l~~~~----~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~ 218 (678)
T KOG1293|consen 143 VKFSLLYSIELKYISRLDVSR----AAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLG 218 (678)
T ss_pred HHHHHHHhhhhhhhhhhhhhh----hccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchh
Confidence 55555554 221222222111 111111110 01123333333333345678999999888432222111
Q ss_pred --H-----HHHhHHH--HHhHhcCCCcHHHHHHHHHHHHhhhhhh-chH------HHH----HhHHHH-HHHhcCCCChH
Q 007863 315 --L-----AIQHILP--CVKELSSDSSQHVRSALATVIMGMAPIL-GKD------ATI----EQLLPI-FLSLLKDEFPD 373 (587)
Q Consensus 315 --~-----~~~~~~~--~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~~~------~~~----~~l~~~-l~~~l~d~~~~ 373 (587)
. ..+.+.+ .+.++.+|++...|...+.++..+...- ..+ .+. +.+..+ ...+..|+...
T Consensus 219 sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s 298 (678)
T KOG1293|consen 219 SMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLS 298 (678)
T ss_pred HHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCcee
Confidence 1 1122333 3456778888888888888777665332 100 000 011111 12223343211
Q ss_pred HHHHHHH---HhHHhhhhhchhhHhhhhHHHHHHHh------cCCCcHHHHHHHHHHH---HHHHhhCh---hhHHH-HH
Q 007863 374 VRLNIIS---KLDQVNQVIGIDLLSQSLLPAIVELA------EDRHWRVRLAIIEYIP---LLASQLGV---GFFDD-KL 437 (587)
Q Consensus 374 vr~~a~~---~l~~i~~~~~~~~~~~~~~~~l~~~~------~~~~~~vr~~~~~~l~---~l~~~~~~---~~~~~-~l 437 (587)
.-..++. .+..+.+.+....+.....+.+.+++ +....+.|.-++.... .++...+. ..+.. ..
T Consensus 299 ~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t 378 (678)
T KOG1293|consen 299 TLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTT 378 (678)
T ss_pred ehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHH
Confidence 1111111 12223333333333233334333332 2344555554433221 12222111 11111 11
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHh---ChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh---HHH
Q 007863 438 GALCMQWLKDKVYSIRDAAANNVKRLAEEF---GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EIT 511 (587)
Q Consensus 438 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~~~ 511 (587)
...+.....-.+..++.+|+.++..+.+.. ....-...+...+.+++.||+..+..+++.++.++.-.+++ ...
T Consensus 379 ~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl 458 (678)
T KOG1293|consen 379 ESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFL 458 (678)
T ss_pred HHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHH
Confidence 222222223456778999999888776533 22222456777788888999999999999999999876664 234
Q ss_pred HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH----HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007863 512 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSK 580 (587)
Q Consensus 512 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l 580 (587)
....+..+.++++++.+++|..+.++|..+.-..+.. ....--...+..+.+|++|.|...+.+.+-.+
T Consensus 459 ~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 459 RNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred HcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 6678889999999999999999999998886544332 22222345566689999999998887776554
No 96
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.66 E-value=0.00076 Score=68.38 Aligned_cols=198 Identities=15% Similarity=0.207 Sum_probs=128.8
Q ss_pred HHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh---HHHHHHH
Q 007863 363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGA 439 (587)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~ 439 (587)
+..+..|..+.+|..++.++...++.---..+.+.++..+..+..+.+..+-...++.+..+++. .+++ ....+.|
T Consensus 496 v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~-dpef~as~~skI~P 574 (1005)
T KOG2274|consen 496 VNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKL-DPEFAASMESKICP 574 (1005)
T ss_pred HHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhcc-ChhhhhhhhcchhH
Confidence 34455677788999999998888743222334456667777777788888888889999888764 3322 1234566
Q ss_pred HHHHHc--CCCchHHHHHHHHHHHHHHHH---hChhhhhhchHHHHHhhhcCCc----cHHHHHHHHHHHHhhcccCh--
Q 007863 440 LCMQWL--KDKVYSIRDAAANNVKRLAEE---FGPDWAMQHIVPQVLEMINNPH----YLYRMTILQAISLLAPVMGS-- 508 (587)
Q Consensus 440 ~l~~~l--~d~~~~vr~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~~l~~~~----~~~r~~a~~~l~~l~~~~~~-- 508 (587)
.++..+ ..+++.|-..+-.++..++.. .|+ ..+..+|.+.+.+.-++ ...-..++..+..+.+.-++
T Consensus 575 ~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~--m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL 652 (1005)
T KOG2274|consen 575 LTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP--MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPL 652 (1005)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCc
Confidence 555443 234457777777777777663 333 35789999999877665 45677788888877775443
Q ss_pred -HHHHHhHHHHHHhhc-CCCCccHHHHHHHHHHHHHhh--------hchH-HHHHhHHHHHHHhcC
Q 007863 509 -EITCSQLLPVVINAS-KDRVPNIKFNVAKVLQSLIPI--------VDQS-VVEKSIRPCLVELSE 563 (587)
Q Consensus 509 -~~~~~~~l~~l~~~l-~d~~~~vR~~a~~~l~~l~~~--------~~~~-~~~~~i~~~l~~l~~ 563 (587)
..+..+.+|.+.++. +..+...-.++-++|..++.. .+.+ ....+++.++.+|++
T Consensus 653 ~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLd 718 (1005)
T KOG2274|consen 653 PNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLD 718 (1005)
T ss_pred cHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcC
Confidence 235677888887763 344555566666777665544 1111 113477888888764
No 97
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.63 E-value=1.6e-07 Score=69.96 Aligned_cols=86 Identities=28% Similarity=0.419 Sum_probs=63.9
Q ss_pred HHHHHhhh-cCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHH
Q 007863 477 VPQVLEMI-NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIR 555 (587)
Q Consensus 477 ~~~l~~~l-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~ 555 (587)
+|.+.+.+ +++++.+|..++.+++.+.. +..+|.+..+++|+++.||..++.+|+.+.. ...+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~ 64 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--------PEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAI 64 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence 45666666 78888888888888885432 4678888888888888999999998887742 3567
Q ss_pred HHHHHhcCC-CCccHHHHHHHHHH
Q 007863 556 PCLVELSED-PDVDVRFFATQALQ 578 (587)
Q Consensus 556 ~~l~~l~~d-~~~~Vr~~a~~al~ 578 (587)
+.|.+++.| ++..||..|.++|+
T Consensus 65 ~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 65 PALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHhhcC
Confidence 777775544 55667888888875
No 98
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=9.1e-05 Score=69.68 Aligned_cols=258 Identities=17% Similarity=0.119 Sum_probs=158.5
Q ss_pred HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHH--HHHhHHHHHH-HhcCCCChHHHHHHHHHhHHhhhhhchhhH
Q 007863 318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLL 394 (587)
Q Consensus 318 ~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~-~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~ 394 (587)
..++-.+..-..|++..+|..++..++..+...+.+. +...++..+. .+..+.+.+|...+..+|..+.+.......
T Consensus 257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l 336 (533)
T KOG2032|consen 257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL 336 (533)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence 4455556666789999999999999999988765332 3344555554 445556799999999999999888776655
Q ss_pred hhhhHHH---HHHHhcCCCcHHHHHHHHHHHHHHHhhCh---hhHHHHHHHH---HHHHcCCCchHHHHHHHHHHHHHHH
Q 007863 395 SQSLLPA---IVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGAL---CMQWLKDKVYSIRDAAANNVKRLAE 465 (587)
Q Consensus 395 ~~~~~~~---l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~l~~l~~ 465 (587)
...+++. +..+..+.+.++|.++...++.+....|. ++|.+.+..- +.-.++|+++.|-. |+......
T Consensus 337 ~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~-- 413 (533)
T KOG2032|consen 337 ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRT-- 413 (533)
T ss_pred hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHh--
Confidence 5555444 45667899999999999999999887653 3343333322 22346888887644 33333332
Q ss_pred HhChhhhhhchHHHHHhhhcCCcc-HHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhh
Q 007863 466 EFGPDWAMQHIVPQVLEMINNPHY-LYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 466 ~~~~~~~~~~~~~~l~~~l~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~ 544 (587)
+++....+..-..+-+.+ |.+. ..+.-.-.++.++.+... + ..-.......-+++...+.||..+...-+.....
T Consensus 414 -c~p~l~rke~~~~~q~~l-d~~~~~~q~Fyn~~c~~L~~i~~-d-~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~ 489 (533)
T KOG2032|consen 414 -CYPNLVRKELYHLFQESL-DTDMARFQAFYNQWCIQLNHIHP-D-ILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDS 489 (533)
T ss_pred -cCchhHHHHHHHHHhhhh-HHhHHHHHHHHHHHHHHHhhhCH-H-HHHHHHHhchhheecchHHHHHHHHHHHHHHHHH
Confidence 222222222222111112 2211 111111112222222111 1 1222333333445666779999988877777665
Q ss_pred hchH----HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863 545 VDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 545 ~~~~----~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~ 582 (587)
..+. .....+...+..+..|+-++|+..|.+|++.+..
T Consensus 490 l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 490 LVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred hHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 5443 3345567778889999999999999999998753
No 99
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=9.3e-05 Score=65.70 Aligned_cols=320 Identities=13% Similarity=0.126 Sum_probs=185.2
Q ss_pred HHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC-------cccchHHHHHHhcCCChH
Q 007863 222 AVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-------TRSDVVPAYVRLLRDNEA 294 (587)
Q Consensus 222 a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-------~~~~l~~~l~~~l~d~~~ 294 (587)
++.+|..+.+........+++.|.+...+..++..|+..+++.++.+........ ....+++.+..++..++.
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 6677777776655555667777888887777888888888888888776654321 134578888888889999
Q ss_pred HHHHHHHHhHHHHHHhhCHH--HHHHhHHHH--HhHhcCCCcHHHHHHHHHHHHhhhhhhc---hHHHHHhHHHHHHHhc
Q 007863 295 EVRIAAAGKVTKICRILNPE--LAIQHILPC--VKELSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLL 367 (587)
Q Consensus 295 ~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~--l~~~~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l 367 (587)
+|.++|.+.+..++..-..- .+-..++.. +.++....+.-+|......+..+....+ .+....-++..+..-+
T Consensus 143 eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaEl 222 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAEL 222 (524)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHh
Confidence 99999999999887631110 000111111 1111222344556556666555543322 2222344556665555
Q ss_pred CC-CChHHHHHHHHHhHHhhhhhchhhH--hhhhHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhChhhHHH----HH-
Q 007863 368 KD-EFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFDD----KL- 437 (587)
Q Consensus 368 ~d-~~~~vr~~a~~~l~~i~~~~~~~~~--~~~~~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~~~~~----~l- 437 (587)
+. .+.-|+..++....++...-...++ .+.++..+.+.+. |.++--+.. .+..+.+.+|.+.+.+ .+
T Consensus 223 kGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfr---almgfgkffgkeaimdvseeaic 299 (524)
T KOG4413|consen 223 KGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFR---ALMGFGKFFGKEAIMDVSEEAIC 299 (524)
T ss_pred cCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHH---HHHHHHHHhcchHHhhcCHHHHH
Confidence 54 5667787777777776654332222 2457777777663 344433222 2333344444332221 11
Q ss_pred ------HHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh-hhhhc---hHHHHHhhhcCCc-cHHHHHHHHHHHHhhccc
Q 007863 438 ------GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD-WAMQH---IVPQVLEMINNPH-YLYRMTILQAISLLAPVM 506 (587)
Q Consensus 438 ------~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~---~~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~ 506 (587)
+.-.+..+...++...++|+.++|.+.+..... ..... -...+.....|.+ .....+++.++.+++...
T Consensus 300 ealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 300 EALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred HHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccc
Confidence 222334456678888999999999988754332 22222 2223333334443 335677888888887532
Q ss_pred C--hHH---------HHH------------hHHHHHHhhcCCCCccHHHHHHHHHHHHHhh
Q 007863 507 G--SEI---------TCS------------QLLPVVINASKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 507 ~--~~~---------~~~------------~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~ 544 (587)
. ++. ... .-+..+...++.|.+++|-++.+++..+...
T Consensus 380 rlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq 440 (524)
T KOG4413|consen 380 RLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ 440 (524)
T ss_pred cCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC
Confidence 1 110 011 1123455667888999999999999988654
No 100
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.61 E-value=5.3e-06 Score=81.73 Aligned_cols=233 Identities=14% Similarity=0.222 Sum_probs=176.1
Q ss_pred ChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcC-CC
Q 007863 292 NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-DE 370 (587)
Q Consensus 292 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~ 370 (587)
.++.-+..-.+.|..+...++...+...++|.+...+.+. ...-...-.+..|++..+..++...++|.+...++ ..
T Consensus 285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~ 362 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD 362 (700)
T ss_pred cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence 4455666777788888888888877888999988776432 22222233344555555666777888888888887 44
Q ss_pred ChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH-cCCCc
Q 007863 371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LKDKV 449 (587)
Q Consensus 371 ~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~ 449 (587)
..++....++.+..+.+....+++.+.++|.|...+++.+..++..++..+..+.+.+....+.+.++|.+..+ +...+
T Consensus 363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~ 442 (700)
T KOG2137|consen 363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN 442 (700)
T ss_pred cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence 56788888899999999999999999999999999999999999999999999999999888888999988875 56778
Q ss_pred hHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhc--ccChHHHHHhHHHHHHhhcCCCC
Q 007863 450 YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP--VMGSEITCSQLLPVVINASKDRV 527 (587)
Q Consensus 450 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~--~~~~~~~~~~~l~~l~~~l~d~~ 527 (587)
..|+..++.|++.+++.+..-...+.+.|.+... +.+++.+....+.....+.- ..|.+...+.++|.+..+...+.
T Consensus 443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 443 LYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI-KTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 8999999999999998776655567677665554 33445555555555555443 33345567889998888776654
No 101
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.59 E-value=0.00099 Score=67.87 Aligned_cols=188 Identities=16% Similarity=0.044 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh-----
Q 007863 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----- 235 (587)
Q Consensus 161 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----- 235 (587)
...+.+++...|-|..+.||..++..+..+.+..+. .....|+.....-..|+...++.++..++..-..-.+.
T Consensus 470 vg~~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~-~~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt 548 (1529)
T KOG0413|consen 470 VGVLYNIVYMRCLDKAAAVRLHALNSLTKILQLQSH-REAFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTT 548 (1529)
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc-cchHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccch
Confidence 345677888889999999999999999988876544 22223333333334444456666555544332111110
Q ss_pred ----------------------hhhhhchHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC
Q 007863 236 ----------------------QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN 292 (587)
Q Consensus 236 ----------------------~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 292 (587)
..+...++..+.+.++ |....||..+++.+..+..+.......+..+.++..++.|+
T Consensus 549 ~~l~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~ 628 (1529)
T KOG0413|consen 549 DLLLDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDR 628 (1529)
T ss_pred hhcCcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCc
Confidence 0112335566666665 77778999999988888777665555566788899999999
Q ss_pred hHHHHHHHHHhHHHHHHhhCHH-HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhh
Q 007863 293 EAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 349 (587)
Q Consensus 293 ~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 349 (587)
-..||+.++..|+.+...-+.- .....-+-.+...++|.+..|...+...+..+..-
T Consensus 629 ~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p 686 (1529)
T KOG0413|consen 629 MVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTP 686 (1529)
T ss_pred chHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhh
Confidence 9999999999998886542221 22334445667788899889999998877776543
No 102
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.56 E-value=0.0018 Score=67.83 Aligned_cols=143 Identities=14% Similarity=0.157 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHcC----CCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhc-CCccHHHHHHHHHHHHhhcccCh
Q 007863 434 DDKLGALCMQWLK----DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGS 508 (587)
Q Consensus 434 ~~~l~~~l~~~l~----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~ 508 (587)
...+.|++....+ -.+++++.+|--+++++.- +..+ |.+.-+|.++..+. .|++.+|..++-+++.++-.++.
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~-iSa~-fces~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC-ISAE-FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh-hhHH-HHHHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 3456777777663 3468999999999999875 3334 45667888888776 88999999999999998865543
Q ss_pred HHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863 509 EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 509 ~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~ 582 (587)
..+..-+.+...+.|+++.||.+|+..+..+.-.= -.-....++.+..++.|+++.||..|..-+..+++
T Consensus 995 --lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd--miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 --LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND--MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred --ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh--hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 35667778889999999999999999999886531 11224567778889999999999999976666654
No 103
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=0.00022 Score=71.51 Aligned_cols=399 Identities=15% Similarity=0.132 Sum_probs=228.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhcccC-chhHHHHHHHHHHHHhcccChh-
Q 007863 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEPQ- 236 (587)
Q Consensus 163 ~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~- 236 (587)
.+-+++..+-...++..+..++.-|+.+...-.++ -..+.++|.+..+++++ +.++...|+++|..+.+.+++.
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 34445555555557777766666666655433332 23567899999999988 5789999999999999999872
Q ss_pred --hhhhchHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH
Q 007863 237 --DCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP 313 (587)
Q Consensus 237 --~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 313 (587)
-.....+|.+..-+. =.--.|-+.++++|..|...-+.......-+..+..+++--...++..|+..-.++|+.+.+
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s 327 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS 327 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 123346776655333 33445777888888888765444333333445555555555568888999999999998887
Q ss_pred H--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH--HH----HHhHHHHHHHhcCCC----ChHHHHHHHHH
Q 007863 314 E--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--AT----IEQLLPIFLSLLKDE----FPDVRLNIISK 381 (587)
Q Consensus 314 ~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~----~~~l~~~l~~~l~d~----~~~vr~~a~~~ 381 (587)
+ .+.-+.+|.+..+++..+..+-..++-++..++..+.+. .. ...++.-..+++.-. +..+....+..
T Consensus 328 d~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrm 407 (1051)
T KOG0168|consen 328 DEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRM 407 (1051)
T ss_pred ccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHH
Confidence 6 345678899999999888888888998998888777422 11 122333344444322 22334444444
Q ss_pred hHHhhhhhc---hhhHhhhhHHHHHHHhcC----CC-------cHHHHHHHHHHHHHHHhhC---hhh-H---HHH----
Q 007863 382 LDQVNQVIG---IDLLSQSLLPAIVELAED----RH-------WRVRLAIIEYIPLLASQLG---VGF-F---DDK---- 436 (587)
Q Consensus 382 l~~i~~~~~---~~~~~~~~~~~l~~~~~~----~~-------~~vr~~~~~~l~~l~~~~~---~~~-~---~~~---- 436 (587)
+..++.... ...+...+...+..++.. .+ .+.-....+....+...+. .+. | ...
T Consensus 408 ls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~ 487 (1051)
T KOG0168|consen 408 LSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEI 487 (1051)
T ss_pred HHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhccc
Confidence 444443211 111112233333333311 11 0111122222222222211 110 0 000
Q ss_pred -----------------------H-HHHHHHHcCCCc----------hHHHHHHHHHHHHHHHHhChhhhhhchHHHHHh
Q 007863 437 -----------------------L-GALCMQWLKDKV----------YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE 482 (587)
Q Consensus 437 -----------------------l-~~~l~~~l~d~~----------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ 482 (587)
+ ..++-+.=.|+. ..-|+..+.-=..+... |...++|.+.+
T Consensus 488 ~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~-----F~~~llpVLve 562 (1051)
T KOG0168|consen 488 VNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQS-----FGKDLLPVLVE 562 (1051)
T ss_pred ccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHH-----HHHHHHHHHHH
Confidence 0 000000000000 01111111111122222 34668999988
Q ss_pred hhcCC-ccHHHHHHHHHHHHhhcccChHHHH-----HhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch----HHHHH
Q 007863 483 MINNP-HYLYRMTILQAISLLAPVMGSEITC-----SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ----SVVEK 552 (587)
Q Consensus 483 ~l~~~-~~~~r~~a~~~l~~l~~~~~~~~~~-----~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~ 552 (587)
.+.+. +..||..++.+|..+......+.+. ..+-..+..++...+..|-..|++....+.++++. ....+
T Consensus 563 VYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~RE 642 (1051)
T KOG0168|consen 563 VYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRRE 642 (1051)
T ss_pred HHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhh
Confidence 87654 7889999999999998766655321 22334555677777888888888888888877654 35556
Q ss_pred hHHHHHHHhcCCCC
Q 007863 553 SIRPCLVELSEDPD 566 (587)
Q Consensus 553 ~i~~~l~~l~~d~~ 566 (587)
.++..+..|..|.+
T Consensus 643 GV~~~v~~L~~~~~ 656 (1051)
T KOG0168|consen 643 GVFHAVKQLSVDSN 656 (1051)
T ss_pred hHHHHHHHHhccCC
Confidence 78888888776543
No 104
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.54 E-value=1.3e-05 Score=68.30 Aligned_cols=106 Identities=21% Similarity=0.197 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHH
Q 007863 216 DSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE 295 (587)
Q Consensus 216 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~ 295 (587)
+.||..++.+++.++...+. ..+...|.+...++|+++.||+.|+.++..+... +--.....++..+..++.|++++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHH
Confidence 56777777777777665543 3455666677777777777777777777776542 11111233445666667777777
Q ss_pred HHHHHHHhHHHHHHhhCHHHHHHhHHHHH
Q 007863 296 VRIAAAGKVTKICRILNPELAIQHILPCV 324 (587)
Q Consensus 296 vr~~a~~~l~~l~~~~~~~~~~~~~~~~l 324 (587)
||..|...+..+....++..+.+.+.+.+
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i 107 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYNNFPELI 107 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 77777777777777654544433333333
No 105
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=7e-06 Score=80.41 Aligned_cols=129 Identities=17% Similarity=0.140 Sum_probs=59.7
Q ss_pred HHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHh-cCCCchHHHHHHHHHHHHHHHHhCCCCcccchHH
Q 007863 205 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF-SQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVP 283 (587)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~ 283 (587)
+++.+++.|++|..|...+..+..-...-+ ....+..++.. .+|.+..||++|..+||-++.. .++.+|
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg----nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~------dp~~~~ 591 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGTG----NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR------DPEQLP 591 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhccC----chhhHHHhhcccccccchHHHHHHHHHheeeEec------Chhhch
Confidence 444455555555555555444332111111 11222222222 4555555666665555544321 122334
Q ss_pred HHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhh
Q 007863 284 AYVRLLRD-NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMA 347 (587)
Q Consensus 284 ~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~ 347 (587)
..++++.+ -++.||.+++-+|+-.|...|.. ..+..+..+..|+...||..|+-+++.+.
T Consensus 592 s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~----eAi~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 592 STVSLLSESYNPHVRYGAAMALGIACAGTGLK----EAINLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred HHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH----HHHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 44444433 34556666666665555544442 22344444455565666666655555443
No 106
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.53 E-value=4.8e-07 Score=67.33 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=10.7
Q ss_pred HHHHhHhcCCCcHHHHHHHHHHHHhh
Q 007863 321 LPCVKELSSDSSQHVRSALATVIMGM 346 (587)
Q Consensus 321 ~~~l~~~~~d~~~~vr~~a~~~l~~l 346 (587)
+|.+..+++|+++.||..++.+++.+
T Consensus 33 ~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 33 IPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 33333333444444444444444433
No 107
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.49 E-value=2.6e-05 Score=69.66 Aligned_cols=188 Identities=13% Similarity=0.084 Sum_probs=128.0
Q ss_pred HHHhHhcC-CCcHHHHHHHHHHHHhhhhhhc-hHHHHH-hHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhh
Q 007863 322 PCVKELSS-DSSQHVRSALATVIMGMAPILG-KDATIE-QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (587)
Q Consensus 322 ~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~-~~~~~~-~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~ 398 (587)
..+..+++ ..++.++..+..+++..+..-. .+...+ ..++.+..++.++++.+|..|+.++..++.........+..
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~ 94 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY 94 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 33444443 4567888888888877654322 222222 46788999999999999999999999888776555545666
Q ss_pred HHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh--Chhhhhh
Q 007863 399 LPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF--GPDWAMQ 474 (587)
Q Consensus 399 ~~~l~~~~~~--~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~ 474 (587)
++.+.+...+ -+..++.++++.+..+.-.-.........+|.++.++...+..+|..+++.|..+...- ..+.+..
T Consensus 95 i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~ 174 (254)
T PF04826_consen 95 IPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSA 174 (254)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhc
Confidence 7777665433 36688888888888775332222233345677788888889999999999999887632 2233445
Q ss_pred chHHHHHhhhcCC-ccHHHHHHHHHHHHhhcccChH
Q 007863 475 HIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGSE 509 (587)
Q Consensus 475 ~~~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~~ 509 (587)
+..+.+..++... +..+-..++..+.++....+++
T Consensus 175 q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 175 QVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred cchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 6666777766554 5667778888888887766544
No 108
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.49 E-value=0.00042 Score=68.28 Aligned_cols=290 Identities=14% Similarity=0.132 Sum_probs=155.0
Q ss_pred HHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHH
Q 007863 208 EELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVR 287 (587)
Q Consensus 208 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 287 (587)
....+ .+..++..|...+..+.+.++. ..+..+..+..+|.|.+..||..|++.|..+|..- ......+..+|.+
T Consensus 29 l~~~k-g~~k~K~Laaq~I~kffk~FP~--l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~--~~~v~kvaDvL~Q 103 (556)
T PF05918_consen 29 LDGVK-GSPKEKRLAAQFIPKFFKHFPD--LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN--PEHVSKVADVLVQ 103 (556)
T ss_dssp HHGGG-S-HHHHHHHHHHHHHHHCC-GG--GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHH
T ss_pred HHHcc-CCHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH--HHHHhHHHHHHHH
Confidence 33444 3577899999999999998876 46778899999999999999999999999998752 2224568899999
Q ss_pred hcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc------hHHHHHhHHH
Q 007863 288 LLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG------KDATIEQLLP 361 (587)
Q Consensus 288 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~l~~ 361 (587)
++..+++..+..+-++|..+.+. .+...+..++..+..- ...+..+|..++..+..-...++ .++..+.+..
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~-d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~ 181 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQ-DPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVD 181 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHH
Confidence 99988888888888888888775 2322223333333311 23467899999888854333222 2445567788
Q ss_pred HHHHhcCCCChHHHHHHHHHhHHhhhh--hchhhHhhhhHHHHHHHhc-C-----CCcHHHHHHHHHHHHHHHhh----C
Q 007863 362 IFLSLLKDEFPDVRLNIISKLDQVNQV--IGIDLLSQSLLPAIVELAE-D-----RHWRVRLAIIEYIPLLASQL----G 429 (587)
Q Consensus 362 ~l~~~l~d~~~~vr~~a~~~l~~i~~~--~~~~~~~~~~~~~l~~~~~-~-----~~~~vr~~~~~~l~~l~~~~----~ 429 (587)
.+.+.|.|-..+==......|..+--. .....-.+.+++.+.+... | .+...-...+.++..-...+ .
T Consensus 182 ~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~ 261 (556)
T PF05918_consen 182 EIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVS 261 (556)
T ss_dssp HHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB-
T ss_pred HHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCC
Confidence 888899884332111222222222110 0111223557777765442 1 12222222333332222222 2
Q ss_pred hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhc----C--C----ccHHHHHHHHHH
Q 007863 430 VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN----N--P----HYLYRMTILQAI 499 (587)
Q Consensus 430 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~----~--~----~~~~r~~a~~~l 499 (587)
...|..++...++..+.+-....|...++.++.++...+... ...++|.+.+.+. . . +...-++.+.++
T Consensus 262 Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~af 340 (556)
T PF05918_consen 262 SSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAF 340 (556)
T ss_dssp -HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS----------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHH
Confidence 222333443333334455556778889999999998877543 3445555555432 1 1 233445555555
Q ss_pred HHhhcc
Q 007863 500 SLLAPV 505 (587)
Q Consensus 500 ~~l~~~ 505 (587)
..++..
T Consensus 341 h~La~k 346 (556)
T PF05918_consen 341 HQLARK 346 (556)
T ss_dssp HHHHTT
T ss_pred HHHhhh
Confidence 555543
No 109
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.49 E-value=1.5e-05 Score=71.22 Aligned_cols=213 Identities=13% Similarity=0.108 Sum_probs=146.8
Q ss_pred HHHHHhcC-CCChHHHHHHHHHhHHhhhhhchhhH-h-hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHH
Q 007863 361 PIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLL-S-QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 437 (587)
Q Consensus 361 ~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~~~~~~-~-~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 437 (587)
..+..+|+ ..+|.++..+..+++..+..-....+ . -..++.+..++.++++.+|..++.++..++.........+..
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~ 94 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY 94 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 44555555 45799999999999987654333222 1 256899999999999999999999988776554332222223
Q ss_pred HHH-HHHHcCC-CchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhccc--ChHHHHH
Q 007863 438 GAL-CMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM--GSEITCS 513 (587)
Q Consensus 438 ~~~-l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~--~~~~~~~ 513 (587)
++. +.....+ .+.+++.++++.|..+.-...........+|.++.++...+..+|..+++.+.+++..- ..+....
T Consensus 95 i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~ 174 (254)
T PF04826_consen 95 IPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSA 174 (254)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhc
Confidence 333 3333333 46789999999999986433322334557888889999899999999999999998742 2333455
Q ss_pred hHHHHHHhhcCCC-CccHHHHHHHHHHHHHhhhchH------------H----H--HHhHHHHHHHhcCCCCccHHHHH
Q 007863 514 QLLPVVINASKDR-VPNIKFNVAKVLQSLIPIVDQS------------V----V--EKSIRPCLVELSEDPDVDVRFFA 573 (587)
Q Consensus 514 ~~l~~l~~~l~d~-~~~vR~~a~~~l~~l~~~~~~~------------~----~--~~~i~~~l~~l~~d~~~~Vr~~a 573 (587)
+.++.+..+++.. ..++-..++..+..+...+.++ . | .+.+-..|..+...+|++||..+
T Consensus 175 q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 175 QVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred cchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 6777777777764 6788888999998887665432 0 0 12244556667788999998764
No 110
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=0.0039 Score=68.62 Aligned_cols=437 Identities=14% Similarity=0.139 Sum_probs=245.6
Q ss_pred hHHhhhhhhccCCCHHHHHHHHHHHHHhcCCC----CHHHHHHHHH--HHHHHHHHHhh---------hhhHHHHHHHHH
Q 007863 144 SSCGLFHVAYPSAPEALKTELRTIYRQLCQDD----MPMVRRSAAT--NLGKFAATVEA---------AHLKSEIMSIFE 208 (587)
Q Consensus 144 ~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~----~~~vR~~a~~--~l~~l~~~~~~---------~~~~~~i~~~l~ 208 (587)
.+..+++.++++.+..++-.+++.+...+... ...|+..+.. ++-.+.+++.+ +.+...-..++.
T Consensus 803 ta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~ 882 (2067)
T KOG1822|consen 803 TAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTLIV 882 (2067)
T ss_pred HHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHh
Confidence 45667888888888777766666666554432 3344444444 55555554432 333344445556
Q ss_pred HhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHH-hcCCCchHHHHHHHHHHHHHHHHhCCCCc---ccchHHH
Q 007863 209 ELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPT---RSDVVPA 284 (587)
Q Consensus 209 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~~~d~~~~vR~~a~~~l~~l~~~~~~~~~---~~~l~~~ 284 (587)
..+...++..|..+.++++.++...+...+...+...+.. +-+-.++-.|..-.-++|.+-++.|.-.. ...-+..
T Consensus 883 ~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~i 962 (2067)
T KOG1822|consen 883 NSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSI 962 (2067)
T ss_pred hhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHH
Confidence 6667778999999999999999988876555555554444 44445677777777888888887765332 2333557
Q ss_pred HHHhcCCChH-HHHHHHHHhHHHHHHhhCHHH--HHHhHHHHHhHh-cCCC--cHHHHHHHHHHHH------hhhhhhch
Q 007863 285 YVRLLRDNEA-EVRIAAAGKVTKICRILNPEL--AIQHILPCVKEL-SSDS--SQHVRSALATVIM------GMAPILGK 352 (587)
Q Consensus 285 l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~-~~d~--~~~vr~~a~~~l~------~l~~~~~~ 352 (587)
+..+-.|+.. .|+..++.++..+....++-. +....+.....+ ++++ ...++...-+++. .+....|+
T Consensus 963 llal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgp 1042 (2067)
T KOG1822|consen 963 LLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGP 1042 (2067)
T ss_pred HHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhccc
Confidence 7777788764 999999999999988766642 222223333332 3333 3445544444443 44433332
Q ss_pred H----H-------HHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHH
Q 007863 353 D----A-------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 421 (587)
Q Consensus 353 ~----~-------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l 421 (587)
+ . .....+-...-++..+++.+..++++++..+.-........+.+++.+..++....--.|...+..+
T Consensus 1043 eL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~~i~r~~~~~cl 1122 (2067)
T KOG1822|consen 1043 ELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSYLILRRASFSCL 1122 (2067)
T ss_pred ccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchhhhhhhhHHhhh
Confidence 1 1 1112222222334455788888888888887655554444567888888877776655555544444
Q ss_pred HHHHHhhChh--------------------hHHHH--HHHHHHHHc-CCCchHHHHHHHHHHHHHHHHhChh--------
Q 007863 422 PLLASQLGVG--------------------FFDDK--LGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPD-------- 470 (587)
Q Consensus 422 ~~l~~~~~~~--------------------~~~~~--l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~-------- 470 (587)
..+....-.+ ++.++ +--.+..++ ...+...++.....+..+...+..+
T Consensus 1123 rql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~~~~~~~~ls~Wl~l 1202 (2067)
T KOG1822|consen 1123 RQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRMLNSLADELLSSWLML 1202 (2067)
T ss_pred hHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4443211000 00000 011111111 1223333444444444422211110
Q ss_pred -----------------------------hhhhchHHHHHhhh------cCCccHHHHHHHHHHHHhhcccCh-------
Q 007863 471 -----------------------------WAMQHIVPQVLEMI------NNPHYLYRMTILQAISLLAPVMGS------- 508 (587)
Q Consensus 471 -----------------------------~~~~~~~~~l~~~l------~~~~~~~r~~a~~~l~~l~~~~~~------- 508 (587)
.+.+..++.-.... ..|.|..|.-++.++..+...+..
T Consensus 1203 ~k~~l~~~~~~s~~~e~s~~kd~~~~~~~~~dDdt~~~t~~~~~~s~p~~qprW~Trvfaa~cv~r~i~~c~a~~~h~d~ 1282 (2067)
T KOG1822|consen 1203 LKDLLQAAEDFSASKELSGEKDEEDEEQESGDDDTVLTTVSRTDDSKPLVQPRWPTRVFAAECVLRIINVCEAVSAHFDM 1282 (2067)
T ss_pred HHHHHHHhhhccccccccccccccchhhcccchhhHHhhhccccccCCccccccchHHHHHHHHHHHhhhhhhhhhhhhH
Confidence 01122232222211 235799999999998865543321
Q ss_pred -------------HHH----HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch------------HHHHHhHHHHHH
Q 007863 509 -------------EIT----CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ------------SVVEKSIRPCLV 559 (587)
Q Consensus 509 -------------~~~----~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~------------~~~~~~i~~~l~ 559 (587)
..| ...++...+...++++...|...++.+..+...+.. +.+...+-.++.
T Consensus 1283 ~la~e~k~~n~e~~d~LvlhlsDLirmsFmaaT~~n~~Lrl~Gl~~L~~vi~~fSsvpEPeFpGh~iLEQ~qAqvgsAlr 1362 (2067)
T KOG1822|consen 1283 ALASEHKLENLERNDYLVLHLSDLIRMSFMAATSDNSQLRLAGLESLEEVIKRFSSVPEPEFPGHSILEQFQAQVGSALR 1362 (2067)
T ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHHHHHhcCchhhhhhccHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHhc
Confidence 111 112333444456888999999999999999887632 133333444444
Q ss_pred H-hcCCCCccHHHHHHHHHHHH
Q 007863 560 E-LSEDPDVDVRFFATQALQSK 580 (587)
Q Consensus 560 ~-l~~d~~~~Vr~~a~~al~~l 580 (587)
. +..|..++|-..|.+.....
T Consensus 1363 pAF~~dts~dv~a~acqVcS~w 1384 (2067)
T KOG1822|consen 1363 PAFSDDTSPDVTAKACQVCSTW 1384 (2067)
T ss_pred hhccCCCChHHHHHHHHHHHHH
Confidence 4 45788889988887765543
No 111
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.46 E-value=2e-05 Score=67.19 Aligned_cols=99 Identities=15% Similarity=0.029 Sum_probs=63.6
Q ss_pred CcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCcc
Q 007863 410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHY 489 (587)
Q Consensus 410 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~ 489 (587)
++.+|..++..++.++..++. +.+...|.+...+.|+++.||..|+.++..+... +.-.....++..+...+.|+++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCH
Confidence 356677777777777665543 2345666777777777777777777777777653 1111234555666666777777
Q ss_pred HHHHHHHHHHHHhhcccChHHH
Q 007863 490 LYRMTILQAISLLAPVMGSEIT 511 (587)
Q Consensus 490 ~~r~~a~~~l~~l~~~~~~~~~ 511 (587)
.+|..|..++..+....+++.+
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i 99 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNII 99 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHH
Confidence 7777777777777765444433
No 112
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=6.2e-05 Score=75.46 Aligned_cols=222 Identities=13% Similarity=0.159 Sum_probs=154.1
Q ss_pred HHHhcCCCChHHHHHHHHHhHHhhhhhc--hhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHH
Q 007863 363 FLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 440 (587)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~~i~~~~~--~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 440 (587)
....+.|+.+.+|.+++..+..+.+.-. .-...+.++....+.++|.+.-|-..+++.+..+++..+.. +.+.+...
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~-il~dL~e~ 810 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED-ILPDLSEE 810 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh-hHHHHHHH
Confidence 3445667888999999999999887432 22234678888899999999999999999888888864332 22333332
Q ss_pred HHHHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccC---hHHHHHhH
Q 007863 441 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG---SEITCSQL 515 (587)
Q Consensus 441 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~~ 515 (587)
..+.-..+..+.|....+++.+++...|+=. +...++.+++....+|+...|..++..++.+++... .+ +..++
T Consensus 811 Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~~ev 889 (982)
T KOG4653|consen 811 YLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-FFHEV 889 (982)
T ss_pred HHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HHHHH
Confidence 3222222334556666688888888777643 346788888888999999999999999999987432 34 33444
Q ss_pred HHHHHh-hcCCCCccHHHHHHHHHHHHHhhhchH--HHH-H---hHHHHHHH-hcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863 516 LPVVIN-ASKDRVPNIKFNVAKVLQSLIPIVDQS--VVE-K---SIRPCLVE-LSEDPDVDVRFFATQALQSKDQVMMS 586 (587)
Q Consensus 516 l~~l~~-~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~-~---~i~~~l~~-l~~d~~~~Vr~~a~~al~~l~~~~~~ 586 (587)
+..++. .-.|..+-+|++|+..+..+....+.+ ++. . .....+.. ...+++..+|.+|..++..+...|.+
T Consensus 890 ~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l~n 968 (982)
T KOG4653|consen 890 LQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAALEN 968 (982)
T ss_pred HHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHh
Confidence 444443 456889999999999999998776643 111 1 11122222 34677778999999999999888764
No 113
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=0.0004 Score=65.54 Aligned_cols=257 Identities=17% Similarity=0.106 Sum_probs=142.9
Q ss_pred hchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC--cccch-HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH
Q 007863 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDV-VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA 316 (587)
Q Consensus 240 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l-~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 316 (587)
..++-.+..-..|++..+|..|+.+|++.+...+... ....+ ..++..+.++.+.+|...++.+|..+.........
T Consensus 257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l 336 (533)
T KOG2032|consen 257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL 336 (533)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence 3445555556678999999999999999987644321 12233 44445556667789999999999988876655443
Q ss_pred HHhHHH---HHhHhcCCCcHHHHHHHHHHHHhhhhhhc---hHHHHHhHHHH---HHHhcCCCChHHHHHHHHHhHHhhh
Q 007863 317 IQHILP---CVKELSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPI---FLSLLKDEFPDVRLNIISKLDQVNQ 387 (587)
Q Consensus 317 ~~~~~~---~l~~~~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~l~~i~~ 387 (587)
.+.+++ .+.++..|.+..+|.++...++.++...| ++.+.+.+... +.-.++|++|.|-.++-..+....+
T Consensus 337 ~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p 416 (533)
T KOG2032|consen 337 ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYP 416 (533)
T ss_pred hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCc
Confidence 333333 35567789999999999999999988775 33444444422 2334678888876655555544444
Q ss_pred hhchhhHhhhhHHHHHHHhcCCCc-HHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Q 007863 388 VIGIDLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (587)
Q Consensus 388 ~~~~~~~~~~~~~~l~~~~~~~~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 466 (587)
.++.++.. .+.+ +.+ |.+- +.+...-.++..+.... ++. .-.+......+++..-+.||.++...-+.+...
T Consensus 417 ~l~rke~~-~~~q---~~l-d~~~~~~q~Fyn~~c~~L~~i~-~d~-l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~ 489 (533)
T KOG2032|consen 417 NLVRKELY-HLFQ---ESL-DTDMARFQAFYNQWCIQLNHIH-PDI-LMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDS 489 (533)
T ss_pred hhHHHHHH-HHHh---hhh-HHhHHHHHHHHHHHHHHHhhhC-HHH-HHHHHHhchhheecchHHHHHHHHHHHHHHHHH
Confidence 44443321 1222 111 1111 11111111111111110 000 011111122233333336777776665555544
Q ss_pred hChhh----hhhchHHHHHhhhcCCccHHHHHHHHHHHHhh
Q 007863 467 FGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLA 503 (587)
Q Consensus 467 ~~~~~----~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~ 503 (587)
...+. ....+...+..+..|+.+.++..+..+++.+.
T Consensus 490 l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 490 LVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred hHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 43331 23445556666667777777777777766553
No 114
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.41 E-value=1.3e-06 Score=69.57 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=74.0
Q ss_pred hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh--HH-HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--
Q 007863 474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--EI-TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-- 548 (587)
Q Consensus 474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~--~~-~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~-- 548 (587)
..+++.+.+++.++++.+|..++.++..++..... .. ....++|.+.+++.|+++.+|..++.+|++++...+..
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 34667777777777777777777777777754221 11 23367777777777777888888888888887654221
Q ss_pred -HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863 549 -VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 549 -~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~ 581 (587)
.....+++.+.+++.+.+.++|..+..++..++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 222346777888777778888888888887765
No 115
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.40 E-value=6.4e-05 Score=64.78 Aligned_cols=92 Identities=17% Similarity=0.254 Sum_probs=73.5
Q ss_pred hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCC--CCccHHHHHHHHHHHHHhhhchHHHH
Q 007863 474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQSVVE 551 (587)
Q Consensus 474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d--~~~~vR~~a~~~l~~l~~~~~~~~~~ 551 (587)
+.-+..+.+-+.+++.-.|..+..++|++-. +..+|.+.+.+.| +++.||..|+++|+.+..
T Consensus 186 EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-------- 249 (289)
T KOG0567|consen 186 EEAINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-------- 249 (289)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------
Confidence 3456667777777788899999999988864 4456677776666 478999999999999875
Q ss_pred HhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863 552 KSIRPCLVELSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 552 ~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~ 581 (587)
+..+++|.+++.|+++-||..+.-||+.+-
T Consensus 250 e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 250 EDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 378899999999999999999988887654
No 116
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.38 E-value=0.0031 Score=61.92 Aligned_cols=451 Identities=11% Similarity=0.036 Sum_probs=236.5
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhh-----cccccc---ccCCchHHHHHHHHHhcccccCcCCc
Q 007863 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKEL-----IPFLSE---NNDDDDEVLLAMAEELGVFIPYVGGL 81 (587)
Q Consensus 10 ~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l-----~p~l~~---~~~~~~~v~~~~~~~l~~~~~~~~~~ 81 (587)
.=.++...+.+.|+++-..|+.-....+-...+. ...+ +|.+.. .-+...++..+.+-.++.+.. |..
T Consensus 10 ss~~~l~~L~~~dpe~lvrai~~~kN~vig~~~~--K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~--~eq 85 (678)
T KOG1293|consen 10 SSLDLLYRLLHLDPEQLVRAIYMSKNLVIGFTDN--KETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFL--GEQ 85 (678)
T ss_pred hhHHHHHhhhcCCHHHHHHHHHHhcchhhcCCCc--cchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHh--hcc
Confidence 3456777888999988777766655544333221 1111 233332 334455666666666665432 221
Q ss_pred c-----hHhhhhhHHHhhhcCch-hHHHHHHHHHHHHHHhhcChh-----hHhhhhHHHHHHhhcCC-CCcchhhHHhhh
Q 007863 82 E-----YANVLLPPLETLCTVEE-TCVRDKAVESLCRIGSQMREQ-----DVVEHFIPLVKRLAAGE-WFTARVSSCGLF 149 (587)
Q Consensus 82 ~-----~~~~l~~~l~~l~~~~~-~~vr~~a~~~l~~l~~~~~~~-----~~~~~ll~~~~~l~~~~-~~~~r~~a~~l~ 149 (587)
. .....++-+.++++++| ..+++...+++.++.+..+.. .....+.+.+.-+...+ ....+-. +.+.
T Consensus 86 d~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~-~~~~ 164 (678)
T KOG1293|consen 86 DKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLD-VSRA 164 (678)
T ss_pred chHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhh-hhhh
Confidence 1 12334455667778888 899999999999998754221 11222333333322211 1111111 1111
Q ss_pred hhhccCCCHH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HHHHHHhh-------hhhHHHHHH--HHHHhcccC
Q 007863 150 HVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLG---KFAATVEA-------AHLKSEIMS--IFEELTQDD 214 (587)
Q Consensus 150 ~~~~~~~~~~---~~~~l~~~l~~l~~~~~~~vR~~a~~~l~---~l~~~~~~-------~~~~~~i~~--~l~~l~~d~ 214 (587)
.........+ .-..+.+-+.-+....+..+|.++..++. .+...-+. ......+.+ ...++..++
T Consensus 165 a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~ 244 (678)
T KOG1293|consen 165 AHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDP 244 (678)
T ss_pred ccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCC
Confidence 1111111111 11233344444445556788999888888 33222110 011112222 455678888
Q ss_pred chhHHHHHHHHHHHHhcccCh-h-----hh-----hhchHH-HHHHhcCCCchHHHHHHHHHHHH---HHHHhCCCCccc
Q 007863 215 QDSVRLLAVEGCGALGKLLEP-Q-----DC-----VAHILP-VIVNFSQDKSWRVRYMVANQLYE---LCEAVGPEPTRS 279 (587)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~~-~-----~~-----~~~l~~-~l~~~~~d~~~~vR~~a~~~l~~---l~~~~~~~~~~~ 279 (587)
++..|..+..++..+...-.. + .+ .+.+.. ....+..|+-|..-..++..+-. ++..........
T Consensus 245 ~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~ 324 (678)
T KOG1293|consen 245 DFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEE 324 (678)
T ss_pred CccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhh
Confidence 888888888888877654311 0 00 001111 11223344433222222222222 222221111111
Q ss_pred chHHHHHHhc------CCChHHHHHHHHHhHHHH---HHhhCH---HHHH-HhHHHHHhHhcCCCcHHHHHHHHHHHHhh
Q 007863 280 DVVPAYVRLL------RDNEAEVRIAAAGKVTKI---CRILNP---ELAI-QHILPCVKELSSDSSQHVRSALATVIMGM 346 (587)
Q Consensus 280 ~l~~~l~~~l------~d~~~~vr~~a~~~l~~l---~~~~~~---~~~~-~~~~~~l~~~~~d~~~~vr~~a~~~l~~l 346 (587)
...+...+++ ....++.|.-+++-..-. +...+. +.+. ......+....-..+..++.+++.++..+
T Consensus 325 ~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~ 404 (678)
T KOG1293|consen 325 ATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSF 404 (678)
T ss_pred hhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 2233333332 233445554444322111 111111 1111 11122222233345778999999888877
Q ss_pred hhhhc---hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh---hHhhhhHHHHHHHhcCCCcHHHHHHHHH
Q 007863 347 APILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEY 420 (587)
Q Consensus 347 ~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~ 420 (587)
...+. ...-...+...+.+++.|++..|...+..++..+...+++- .+....+..+.+...+++..+|..+..+
T Consensus 405 srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~ 484 (678)
T KOG1293|consen 405 SRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWV 484 (678)
T ss_pred HHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHH
Confidence 65442 11112345566778889999999999999999998777642 3455678889999999999999999988
Q ss_pred HHHHHHhhChhh----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 007863 421 IPLLASQLGVGF----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 465 (587)
Q Consensus 421 l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 465 (587)
+..+.-....+. +..--...+..+..|++|.|.+++.+.+.++.-
T Consensus 485 Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 485 LRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 877764332221 122234456677899999999999999988864
No 117
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=98.35 E-value=0.003 Score=61.06 Aligned_cols=202 Identities=15% Similarity=0.047 Sum_probs=118.1
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhCh--hhhhhhhcccccc-ccCCchHHHHHHHHHhcccccCcCCcchHhh
Q 007863 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGE--ERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANV 86 (587)
Q Consensus 10 ~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~--~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~ 86 (587)
.+.+++-++.|+|..+|..+.+-+.-+....++ +....-|+.-+.+ ..|.++-||..+..+|..+-..-+.++ ..
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee--n~ 169 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE--NR 169 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--HH
Confidence 478888999999999999999888877766665 4444444444433 567888999999999988755444333 22
Q ss_pred hhhHHHh-hhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhH-HhhhhhhccCCCHHHHHHH
Q 007863 87 LLPPLET-LCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSS-CGLFHVAYPSAPEALKTEL 164 (587)
Q Consensus 87 l~~~l~~-l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a-~~l~~~~~~~~~~~~~~~l 164 (587)
+..++.. +..||...||+.|+-.+.. ...-.|++.+-+.|-+-..|... ...+..+.......+.+.+
T Consensus 170 ~~n~l~~~vqnDPS~EVRr~allni~v----------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri 239 (885)
T COG5218 170 IVNLLKDIVQNDPSDEVRRLALLNISV----------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRI 239 (885)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHeee----------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhcccccee
Confidence 3334333 3468999999998744322 12234555554544333333222 2233333222222233333
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcc
Q 007863 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL 232 (587)
Q Consensus 165 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 232 (587)
+ ++...+.|.+..||.++..++..-.... ....++.++..+- ..-|..++.++..+.+.
T Consensus 240 ~-l~ewgl~dRe~sv~~a~~d~ia~~w~~~----~d~~lveLle~lD----vSr~sv~v~aik~~F~~ 298 (885)
T COG5218 240 L-LMEWGLLDREFSVKGALVDAIASAWRIP----EDLRLVELLEFLD----VSRRSVLVAAIKGVFEK 298 (885)
T ss_pred h-hhhhcchhhhhhHHHHHHHHHHHHhccc----ccccHHHHHHHHh----hhhHHHHHHHHHHHHhh
Confidence 3 6667788889999999988876533221 1223444443332 22344555556655554
No 118
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=0.00053 Score=67.53 Aligned_cols=105 Identities=17% Similarity=0.172 Sum_probs=50.0
Q ss_pred HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc--hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh
Q 007863 315 LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (587)
Q Consensus 315 ~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~ 392 (587)
.+...++.++.+....++..||...+..+..+....+ .+...+.+...+..-+.|..|.||..|+.+|+.+-..-+.+
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 3344444555555555555555555555555544332 22233444444445555555555555555555554322222
Q ss_pred hHhhhhHHHHHHHh-cCCCcHHHHHHHHHH
Q 007863 393 LLSQSLLPAIVELA-EDRHWRVRLAIIEYI 421 (587)
Q Consensus 393 ~~~~~~~~~l~~~~-~~~~~~vr~~~~~~l 421 (587)
.. .+...+..++ +|++..||.+++..+
T Consensus 161 e~--~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 161 EC--PVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred cc--cHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 21 3444444443 245555555554433
No 119
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=0.00026 Score=69.60 Aligned_cols=172 Identities=16% Similarity=0.096 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChh
Q 007863 159 ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ 236 (587)
Q Consensus 159 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~ 236 (587)
+....++..+.....+++..||..+++.|..+...... +...+.+...+..-+.|..+.||..|+.+|..+-+.-.+
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d- 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD- 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC-
Confidence 46777888888888999999999999999998874432 455666666677778889999999999999988642211
Q ss_pred hhhhchHHHHHHhc-CCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHh-HHHHHHhhCHH
Q 007863 237 DCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGK-VTKICRILNPE 314 (587)
Q Consensus 237 ~~~~~l~~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~-l~~l~~~~~~~ 314 (587)
..-.+...+..++ +|++++||++|+.++.. .+.-.|.+.....|-+..+|+.+-.. +..+ .. ...
T Consensus 160 -ee~~v~n~l~~liqnDpS~EVRRaaLsnI~v----------dnsTlp~IveRarDV~~anRrlvY~r~lpki-d~-r~l 226 (892)
T KOG2025|consen 160 -EECPVVNLLKDLIQNDPSDEVRRAALSNISV----------DNSTLPCIVERARDVSGANRRLVYERCLPKI-DL-RSL 226 (892)
T ss_pred -CcccHHHHHHHHHhcCCcHHHHHHHHHhhcc----------CcccchhHHHHhhhhhHHHHHHHHHHhhhhh-hh-hhh
Confidence 2334566666655 48899999999876542 34567888888888877777665433 3333 11 111
Q ss_pred HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHh
Q 007863 315 LAIQHILPCVKELSSDSSQHVRSALATVIMG 345 (587)
Q Consensus 315 ~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~ 345 (587)
. .+.-+-.+...++|.+..||.++.+++..
T Consensus 227 s-i~krv~LlewgLnDRe~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 227 S-IDKRVLLLEWGLNDREFSVKGALVDAILS 256 (892)
T ss_pred h-HHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 1 13345556677788888888887776643
No 120
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.33 E-value=0.00039 Score=60.15 Aligned_cols=197 Identities=16% Similarity=0.173 Sum_probs=126.5
Q ss_pred hchHHHHHHhcCC--CchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---
Q 007863 240 AHILPVIVNFSQD--KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--- 314 (587)
Q Consensus 240 ~~l~~~l~~~~~d--~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--- 314 (587)
..-+|.+...+.| ..+.||..|+++|+.+. .+...+++.++.+|+-..||..+..++..+-..-+-.
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~--------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~ 137 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIA 137 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhc--------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcccccc
Confidence 3456666666655 46788889988888776 2457788888888888888888777777664321100
Q ss_pred ---HHH---------HhHHHHHhHhcCCCc--HHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHH
Q 007863 315 ---LAI---------QHILPCVKELSSDSS--QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIIS 380 (587)
Q Consensus 315 ---~~~---------~~~~~~l~~~~~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~ 380 (587)
.+. ..-+.-+...+.|.+ -.-|..+...+..++ + +.-+..+...+.++++-.|-.++.
T Consensus 138 ~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g---~-----EeaI~al~~~l~~~SalfrhEvAf 209 (289)
T KOG0567|consen 138 NSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG---T-----EEAINALIDGLADDSALFRHEVAF 209 (289)
T ss_pred ccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC---c-----HHHHHHHHHhcccchHHHHHHHHH
Confidence 000 000111111122221 123334444444433 1 122345667778888889999999
Q ss_pred HhHHhhhhhchhhHhhhhHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHH
Q 007863 381 KLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAAN 458 (587)
Q Consensus 381 ~l~~i~~~~~~~~~~~~~~~~l~~~~~~--~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~ 458 (587)
+++++-. +.-+|.+.+.+.| +++-||..+.++++.++. +..++++...++|+.+-||+.+.-
T Consensus 210 VfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--------e~~~~vL~e~~~D~~~vv~esc~v 273 (289)
T KOG0567|consen 210 VFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--------EDCVEVLKEYLGDEERVVRESCEV 273 (289)
T ss_pred HHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 9888764 4567777777665 578899999999988774 557888889999999999998888
Q ss_pred HHHHHHHHhC
Q 007863 459 NVKRLAEEFG 468 (587)
Q Consensus 459 ~l~~l~~~~~ 468 (587)
+|...-...+
T Consensus 274 aldm~eyens 283 (289)
T KOG0567|consen 274 ALDMLEYENS 283 (289)
T ss_pred HHHHHHHhcc
Confidence 8766544333
No 121
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.32 E-value=4.8e-06 Score=66.30 Aligned_cols=107 Identities=15% Similarity=0.083 Sum_probs=81.1
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhC---hhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH--H
Q 007863 436 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--I 510 (587)
Q Consensus 436 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~--~ 510 (587)
.+++.+..++.+.++.+|..++.+++.++.... .......++|.+.+++.+++..+|..++.++++++...+.. .
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 356677777888888888888888888886421 12233578888888888888899999999999998754321 1
Q ss_pred -HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHH
Q 007863 511 -TCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 542 (587)
Q Consensus 511 -~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~ 542 (587)
....+++.+...+.+.+..+|..++.++..++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 23447888888888888899999999888775
No 122
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.30 E-value=0.00081 Score=66.32 Aligned_cols=278 Identities=16% Similarity=0.170 Sum_probs=148.9
Q ss_pred CcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhH
Q 007863 139 FTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSV 218 (587)
Q Consensus 139 ~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~v 218 (587)
...+..|+.++...+..+ ++..+..++.+..+|+|++..||..|++.|..++... +.+...+..+|.++++.+++..
T Consensus 36 ~k~K~Laaq~I~kffk~F-P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~--~~~v~kvaDvL~QlL~tdd~~E 112 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHF-PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN--PEHVSKVADVLVQLLQTDDPVE 112 (556)
T ss_dssp HHHHHHHHHHHHHHHCC--GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---HHH
T ss_pred HHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH--HHHHhHHHHHHHHHHhcccHHH
Confidence 445667778888888877 5577788899999999999999999999999999853 4688889999999999888877
Q ss_pred HHHHHHHHHHHhcccChhhhhhchHHHHHHhc--CCCchHHHHHHHHHHHHHHHHhCCCCcc------cchHHHHHHhcC
Q 007863 219 RLLAVEGCGALGKLLEPQDCVAHILPVIVNFS--QDKSWRVRYMVANQLYELCEAVGPEPTR------SDVVPAYVRLLR 290 (587)
Q Consensus 219 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~--~d~~~~vR~~a~~~l~~l~~~~~~~~~~------~~l~~~l~~~l~ 290 (587)
+...-.+|..+...-+. ..+-.++.++. ...+..+|.-++..|..-...++.+... ..+...+.+.++
T Consensus 113 ~~~v~~sL~~ll~~d~k----~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~ 188 (556)
T PF05918_consen 113 LDAVKNSLMSLLKQDPK----GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQ 188 (556)
T ss_dssp HHHHHHHHHHHHHH-HH----HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCcH----HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHH
Confidence 77777778777664332 22333333333 2456779999998887655555544433 235667777888
Q ss_pred CChHHHHHHHHHhHHHHHHh--hCHHHHHHhHHHHHhHhcC-----C-CcHHHHHHHHHHHHhhhhhh----chHHHHHh
Q 007863 291 DNEAEVRIAAAGKVTKICRI--LNPELAIQHILPCVKELSS-----D-SSQHVRSALATVIMGMAPIL----GKDATIEQ 358 (587)
Q Consensus 291 d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~~~~-----d-~~~~vr~~a~~~l~~l~~~~----~~~~~~~~ 358 (587)
|-..+-=...+..|..+-.. ..+......+++.+..... + .+...-...+.++..-...+ ....+..+
T Consensus 189 DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y 268 (556)
T PF05918_consen 189 DVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNY 268 (556)
T ss_dssp T--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHH
T ss_pred hccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHH
Confidence 74432222222222222211 1112223556666664431 1 22333233333333322332 23334444
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhc------CCCcHHHHHHHHHHHHH
Q 007863 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE------DRHWRVRLAIIEYIPLL 424 (587)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~------~~~~~vr~~~~~~l~~l 424 (587)
+..-++.-+.+-.++.|...+..+++++...+..+ ...++|.+..++. ...+......++++-..
T Consensus 269 ~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~a 339 (556)
T PF05918_consen 269 MCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYA 339 (556)
T ss_dssp HHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS----------HHHHHHHHHH
T ss_pred HHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHH
Confidence 44444444555567889999999999999988665 3456666666553 23444444555554433
No 123
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.28 E-value=0.00012 Score=68.45 Aligned_cols=192 Identities=15% Similarity=0.196 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhccc-CchhHHHHHHHHHHHHhcccCh
Q 007863 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP 235 (587)
Q Consensus 160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~ 235 (587)
....+.+.+..+-.+....-|+.|...|-.+...-+. +.+...|+-.+.+.+.| .++..|..|.+.|..+...-+.
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 4456666677776665566777777766554432211 34445566666677777 7888999999999998876554
Q ss_pred --hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH
Q 007863 236 --QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP 313 (587)
Q Consensus 236 --~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 313 (587)
....+..+..+++...|.+..|-..|.+.+..+.....+......+.|.+.. .+...-.++++.+..+.+.+..
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~ 439 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSA 439 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCH
Confidence 2233445556666777877777666666655554433322222233444433 4445556777788888888887
Q ss_pred HH---HHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHH
Q 007863 314 EL---AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 355 (587)
Q Consensus 314 ~~---~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~ 355 (587)
+. ..+.+.|.+.+..++.+..||.+++.+|..+...+|.+..
T Consensus 440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~m 484 (516)
T KOG2956|consen 440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEM 484 (516)
T ss_pred HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhh
Confidence 73 4567888888888899999999999999998888775443
No 124
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.27 E-value=0.00012 Score=68.55 Aligned_cols=190 Identities=14% Similarity=0.136 Sum_probs=131.0
Q ss_pred HHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh---hhhhhchHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhCCCC
Q 007863 201 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP 276 (587)
Q Consensus 201 ~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~ 276 (587)
+.+...+.++-+++..+-|..|..-|..+...-+. +.+...++-.+.+.+.| .+...|..|++.|+.++..-+...
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l 365 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL 365 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence 34555666666666666778777766555433221 34456677777888888 789999999999999988755433
Q ss_pred ccc--chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHH
Q 007863 277 TRS--DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA 354 (587)
Q Consensus 277 ~~~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~ 354 (587)
... ..+.-+.+.-+|.+++|-..|.+.+..+.....+..-...+.|.+.. .+...-.++++.+..+++.+..+.
T Consensus 366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~Ee 441 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEE 441 (516)
T ss_pred hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHH
Confidence 221 23444555667888887777777766666655555433445555543 444555667778888888777665
Q ss_pred ---HHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhH
Q 007863 355 ---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 394 (587)
Q Consensus 355 ---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~ 394 (587)
..+.+.|.+.+.....+..||+.++.+|-.+...+|.+.+
T Consensus 442 L~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~m 484 (516)
T KOG2956|consen 442 LLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEM 484 (516)
T ss_pred HHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhh
Confidence 3467889999999999999999999999999988886543
No 125
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=0.0011 Score=66.66 Aligned_cols=153 Identities=10% Similarity=0.077 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHhhh--hhH-HHHHHHH-HHhcccCchhHHHHHHHHHHHHhcccC
Q 007863 160 LKTELRTIYRQLCQDD-MPMVRRSAATNLGKFAATVEAA--HLK-SEIMSIF-EELTQDDQDSVRLLAVEGCGALGKLLE 234 (587)
Q Consensus 160 ~~~~l~~~l~~l~~~~-~~~vR~~a~~~l~~l~~~~~~~--~~~-~~i~~~l-~~l~~d~~~~vr~~a~~~l~~l~~~~~ 234 (587)
-.+.++|.+..++++. ++.+-..||.+|..+++.++.. ..+ ...+|.| .++..-+.-+|...+..++..+...-+
T Consensus 208 pv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~ 287 (1051)
T KOG0168|consen 208 PVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP 287 (1051)
T ss_pred cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc
Confidence 4567888888887764 6889999999999999988752 111 2234433 345555667788888888888887766
Q ss_pred hhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCccc--chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC
Q 007863 235 PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS--DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN 312 (587)
Q Consensus 235 ~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 312 (587)
.......-+..++..+.-=+..+++.|+..-.+.|..+..+.... +.+|.+..+++..+..+-+.++-++..+...+.
T Consensus 288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 554444445555555555566778888888888888877655432 568999999988888888888888888877654
No 126
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=98.21 E-value=0.0021 Score=64.58 Aligned_cols=408 Identities=12% Similarity=0.072 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhcccC-chhHHHHHHHHHHHHhcccChhh
Q 007863 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-AHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEPQD 237 (587)
Q Consensus 160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~ 237 (587)
..+.+++.+..-+.++...||..+.+.+..+...+.. +.+.=-+-.++.++-+.+ ...||..++--+..-.+.++.+
T Consensus 20 ~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~- 98 (501)
T PF13001_consen 20 VLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDE- 98 (501)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHH-
Confidence 3444555555555677799999999999999888765 333222334444444444 5788988887777766666654
Q ss_pred hhhchHHHHHHhcCCCchH---HHHHHHHHHHHHHHHhCCCCcccc---hH--HHHHHhcCCChHHHHHHHHHhHHHHHH
Q 007863 238 CVAHILPVIVNFSQDKSWR---VRYMVANQLYELCEAVGPEPTRSD---VV--PAYVRLLRDNEAEVRIAAAGKVTKICR 309 (587)
Q Consensus 238 ~~~~l~~~l~~~~~d~~~~---vR~~a~~~l~~l~~~~~~~~~~~~---l~--~~l~~~l~d~~~~vr~~a~~~l~~l~~ 309 (587)
....++|.+.+.++..... .....+..+..+++.......+.. .. +.-...+.|. ......+.....+..
T Consensus 99 e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~l~~~~~~~~~ 176 (501)
T PF13001_consen 99 ERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSLGLSDF--CDDVFLAPWFSKFLL 176 (501)
T ss_pred HHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHHhhcch--HHHHHcchhhccccc
Confidence 3556778887777643221 222222222223332211000000 00 0000011110 000000000000000
Q ss_pred h--------hCHHHHHHhHHHH--HhHhcC------C--CcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCC
Q 007863 310 I--------LNPELAIQHILPC--VKELSS------D--SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 371 (587)
Q Consensus 310 ~--------~~~~~~~~~~~~~--l~~~~~------d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~ 371 (587)
. -|...-....+.. +..... + .-..+|.++++.+..-. ++ .+..++.+.-.-.|++
T Consensus 177 l~~~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~--f~----d~~~~~~~liAsad~~ 250 (501)
T PF13001_consen 177 LQPNRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGF--FP----DEERFPPLLIASADSN 250 (501)
T ss_pred cccccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcC--CC----cHhHHhheeeEEeCCc
Confidence 0 0000000000000 000000 0 11245555555554332 11 1123333444446777
Q ss_pred hHHHHHHHHHhHHhhhhhchhhHhhhhHHHHH--HHhcC-----CCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH
Q 007863 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV--ELAED-----RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW 444 (587)
Q Consensus 372 ~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~--~~~~~-----~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~ 444 (587)
..|...+-..|.++...+....+.+.++..+. ..-.+ -++.+|..++..+.. ........+.++.++...
T Consensus 251 ~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~k---S~~Aa~~~~~~~~i~~~~ 327 (501)
T PF13001_consen 251 SSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSK---SVIAATSFPNILQIVFDG 327 (501)
T ss_pred chHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHH---hHHHHhCCccHHHHHhcc
Confidence 88888888888888877665544444444443 11111 246677666655543 322222235667777777
Q ss_pred cCCC--chHHHHHHHHHH---HHHHHHhChhhh---hhchHHHHHhhhc--------CCccHHHHHHHHHHHHhhcccCh
Q 007863 445 LKDK--VYSIRDAAANNV---KRLAEEFGPDWA---MQHIVPQVLEMIN--------NPHYLYRMTILQAISLLAPVMGS 508 (587)
Q Consensus 445 l~d~--~~~vr~~a~~~l---~~l~~~~~~~~~---~~~~~~~l~~~l~--------~~~~~~r~~a~~~l~~l~~~~~~ 508 (587)
+.+. ...+|..+++.+ ......++.... .+.+...+...+. ..+...|..+..+||.++...+.
T Consensus 328 l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~ 407 (501)
T PF13001_consen 328 LYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPS 407 (501)
T ss_pred ccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcc
Confidence 7777 778999999999 777777766531 1222222222231 23567999999999999986554
Q ss_pred HH-HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHH-----HHhHHH-HHHHhcCCCCccHHHHHHHHHHH
Q 007863 509 EI-TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV-----EKSIRP-CLVELSEDPDVDVRFFATQALQS 579 (587)
Q Consensus 509 ~~-~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~-----~~~i~~-~l~~l~~d~~~~Vr~~a~~al~~ 579 (587)
-. -.-.++..++..+.++.+++|.+.-++|+.+...+....- ....+. .+.....+....+|..|++-...
T Consensus 408 l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~ 485 (501)
T PF13001_consen 408 LFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANA 485 (501)
T ss_pred cccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 32 1234566677777889999999999999999988754221 111222 22224456667788887765443
No 127
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.20 E-value=0.00057 Score=63.58 Aligned_cols=180 Identities=20% Similarity=0.187 Sum_probs=113.3
Q ss_pred hcCCCcHHHHHHHHHHHHHHHh-hChhhH---HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhC--h--hhhhhchH
Q 007863 406 AEDRHWRVRLAIIEYIPLLASQ-LGVGFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG--P--DWAMQHIV 477 (587)
Q Consensus 406 ~~~~~~~vr~~~~~~l~~l~~~-~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~--~~~~~~~~ 477 (587)
+.++....|..+++.+..+... +-.+++ ...+++.+.+.++....+-+..|+++++-++-.+| . +.+.+.+.
T Consensus 52 l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~ 131 (309)
T PF05004_consen 52 LTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELK 131 (309)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Confidence 3455566677776666554422 223332 24567777777776666666777888888877766 2 23456778
Q ss_pred HHHHhhhcCCc--cHHHHHHHHHHHHhhcccChH-HHHH---hHHHHHHh--hcC-C---------CCccHHHHHHHHHH
Q 007863 478 PQVLEMINNPH--YLYRMTILQAISLLAPVMGSE-ITCS---QLLPVVIN--ASK-D---------RVPNIKFNVAKVLQ 539 (587)
Q Consensus 478 ~~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~~~-~~~~---~~l~~l~~--~l~-d---------~~~~vR~~a~~~l~ 539 (587)
|.|...+.|.. ...|..++.+++.+.-..+.+ .-.. ..+..+.. ..+ | +++.+..+|+.+++
T Consensus 132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~ 211 (309)
T PF05004_consen 132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWA 211 (309)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHH
Confidence 88888777764 456777777777665433322 1122 22331111 111 1 24568888888888
Q ss_pred HHHhhhchH---HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhh
Q 007863 540 SLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 585 (587)
Q Consensus 540 ~l~~~~~~~---~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~ 585 (587)
.+...++.. ...+..+|.|..++..++.+||..|.++++-+.+..+
T Consensus 212 lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 212 LLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 888777663 3345567888888888889999999999988877654
No 128
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=0.0043 Score=55.51 Aligned_cols=348 Identities=14% Similarity=0.156 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhh-------hhhchHHHHHHhcCCCch
Q 007863 183 AATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD-------CVAHILPVIVNFSQDKSW 255 (587)
Q Consensus 183 a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-------~~~~l~~~l~~~~~d~~~ 255 (587)
+..+|..+.+........+.+.|-++..+..++..|+..++..++.+.+..+.+. .-..+++.+..++...+.
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 4555555555554456667778888888888888888888888888877766321 124578888888888899
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC----------ChHHHHHHHHHhHHHHHHhhCHHH----HHHhHH
Q 007863 256 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD----------NEAEVRIAAAGKVTKICRILNPEL----AIQHIL 321 (587)
Q Consensus 256 ~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d----------~~~~vr~~a~~~l~~l~~~~~~~~----~~~~~~ 321 (587)
.|-++|.+.+..++..- ..+--+|-+-+.| -+.-+|......+..+... +++. ....++
T Consensus 143 eVAkAAiesikrialfp------aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSi-SpesaneckkSGLl 215 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALFP------AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSI-SPESANECKKSGLL 215 (524)
T ss_pred HHHHHHHHHHHHHHhcH------HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhc-CHHHHhHhhhhhHH
Confidence 99999999988876421 1111111111111 1223444445555444432 2221 123355
Q ss_pred HHHhHhc-CCCcHHHHHHHHHHHHhhhhhhchHHHH--HhHHHHHHHhcC--CCChHHHHHHHHHhHHhhhhhchhhHhh
Q 007863 322 PCVKELS-SDSSQHVRSALATVIMGMAPILGKDATI--EQLLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDLLSQ 396 (587)
Q Consensus 322 ~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~--d~~~~vr~~a~~~l~~i~~~~~~~~~~~ 396 (587)
..+..-+ ...+.-|+..+++...+++..-....+. +.++..+...+. |++|.-+.. ++..+.+.+|++.+.+
T Consensus 216 dlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfr---almgfgkffgkeaimd 292 (524)
T KOG4413|consen 216 DLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFR---ALMGFGKFFGKEAIMD 292 (524)
T ss_pred HHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHH---HHHHHHHHhcchHHhh
Confidence 5554333 3466778888888888887544322222 224444444432 333433322 3333444444332211
Q ss_pred --------h---hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC-hhhHH----HHHHHHHHHHcCCCchHHHHHHHHHH
Q 007863 397 --------S---LLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-VGFFD----DKLGALCMQWLKDKVYSIRDAAANNV 460 (587)
Q Consensus 397 --------~---~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~-~~~~~----~~l~~~l~~~l~d~~~~vr~~a~~~l 460 (587)
. .+....+.++..+++....++..++.+..... .+... +..-.++.+........-.+.++.+|
T Consensus 293 vseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaL 372 (524)
T KOG4413|consen 293 VSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHAL 372 (524)
T ss_pred cCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHH
Confidence 1 12222345566788889999999998876542 22221 22333344444333334456777788
Q ss_pred HHHHHHhC---------hh-------hhh-----hch--HHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHH-
Q 007863 461 KRLAEEFG---------PD-------WAM-----QHI--VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLL- 516 (587)
Q Consensus 461 ~~l~~~~~---------~~-------~~~-----~~~--~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l- 516 (587)
..+..... .. +|. .++ +..+...++.|.+++|.++++.+..++.. .|....++
T Consensus 373 aaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq---PWalkeifa 449 (524)
T KOG4413|consen 373 AAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ---PWALKEIFA 449 (524)
T ss_pred HHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC---cHHHHHHhc
Confidence 77765321 11 010 111 12233346678899999999999988752 22233332
Q ss_pred -HHHHhhcCCCCccHHHHHHHHHHHHHh
Q 007863 517 -PVVINASKDRVPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 517 -~~l~~~l~d~~~~vR~~a~~~l~~l~~ 543 (587)
|.+++...|.+.+.-..+..+=..+++
T Consensus 450 keefieiVtDastEhaKaakdAkYeccK 477 (524)
T KOG4413|consen 450 KEEFIEIVTDASTEHAKAAKDAKYECCK 477 (524)
T ss_pred CccceeeecccchhhHHHHHHHHHHHHH
Confidence 345555666655444444443333333
No 129
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.00051 Score=69.21 Aligned_cols=213 Identities=17% Similarity=0.187 Sum_probs=147.2
Q ss_pred HhcCCCcHHHHHHHHHHHHhhhhhhc--hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHH
Q 007863 326 ELSSDSSQHVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (587)
Q Consensus 326 ~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~ 403 (587)
..+.|+...+|..++..+..+.+.-. .-...+.++......++|.++.|-..+++.+..++..+. +.++|.+.
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----e~il~dL~ 808 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----EDILPDLS 808 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----hhhHHHHH
Confidence 34567777889999988888876332 223456788899999999999999999998888887643 45667666
Q ss_pred HHhc---C-CCcHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhC---hhhhhh
Q 007863 404 ELAE---D-RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWAMQ 474 (587)
Q Consensus 404 ~~~~---~-~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~ 474 (587)
+... + ...+.|..+-+++..+....|.-. +...+...++...+|++..-|..++..+|.++.... .+++ .
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~-~ 887 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF-H 887 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH-H
Confidence 5332 1 224556666688888888777533 235677888888999999999999999999998654 3433 3
Q ss_pred chHHHHHhh-hcCCccHHHHHHHHHHHHhhcccChHH--HH----HhHHHHHHhh-cCCCCccHHHHHHHHHHHHHhh
Q 007863 475 HIVPQVLEM-INNPHYLYRMTILQAISLLAPVMGSEI--TC----SQLLPVVINA-SKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 475 ~~~~~l~~~-l~~~~~~~r~~a~~~l~~l~~~~~~~~--~~----~~~l~~l~~~-l~d~~~~vR~~a~~~l~~l~~~ 544 (587)
.++..+... ..|....+|.+|+..+..+....|.+- +. ......+... ..++...+|..+..++..+-..
T Consensus 888 ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~ 965 (982)
T KOG4653|consen 888 EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAA 965 (982)
T ss_pred HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 344444443 567788999999999999988777541 11 0111122222 2355667888888877766443
No 130
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=98.15 E-value=0.00087 Score=67.29 Aligned_cols=402 Identities=14% Similarity=0.098 Sum_probs=214.1
Q ss_pred hhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcCh-hhHhhhhHHHHHHhhcCC-CCcchhhHHhhhhhhccCCCHHHHHH
Q 007863 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-QDVVEHFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEALKTE 163 (587)
Q Consensus 86 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~ll~~~~~l~~~~-~~~~r~~a~~l~~~~~~~~~~~~~~~ 163 (587)
.+.|+|.++ .+++..||...++.+..+-+.+.. ..+.--+-.++.++.+.+ ...+|..+.-.+..-.++.+.+.+..
T Consensus 24 ~L~plLlkl-~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~e~~~ 102 (501)
T PF13001_consen 24 YLPPLLLKL-ASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDEERRE 102 (501)
T ss_pred HHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 344555555 567889999999999998887765 333333444555656555 56677777777777788998888889
Q ss_pred HHHHHHHhcCCCCHHHHH---HHHHHHHHHHHHHhhh-----hhHHHH-HHHHHHhcccCchhHHHHHHHHHHHHhccc-
Q 007863 164 LRTIYRQLCQDDMPMVRR---SAATNLGKFAATVEAA-----HLKSEI-MSIFEELTQDDQDSVRLLAVEGCGALGKLL- 233 (587)
Q Consensus 164 l~~~l~~l~~~~~~~vR~---~a~~~l~~l~~~~~~~-----~~~~~i-~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~- 233 (587)
++|.+.+.+......-+. ..+..+..+++..... ...... ..... .+.+. ..... .........
T Consensus 103 llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~-~l~~~--~~~~~---l~~~~~~~~~ 176 (501)
T PF13001_consen 103 LLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSL-GLSDF--CDDVF---LAPWFSKFLL 176 (501)
T ss_pred HHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHH-hhcch--HHHHH---cchhhccccc
Confidence 999888887643211111 1111111122211110 000000 00000 00000 00000 000000000
Q ss_pred --------Ch---hhhhhchHH-HHHHhcCC--------CchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCCh
Q 007863 234 --------EP---QDCVAHILP-VIVNFSQD--------KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE 293 (587)
Q Consensus 234 --------~~---~~~~~~l~~-~l~~~~~d--------~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~ 293 (587)
.+ ....+.+-. ........ .-.++|...++.+..-.. ...+.++.++-...|++
T Consensus 177 l~~~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f------~d~~~~~~~liAsad~~ 250 (501)
T PF13001_consen 177 LQPNRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFF------PDEERFPPLLIASADSN 250 (501)
T ss_pred cccccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCC------CcHhHHhheeeEEeCCc
Confidence 00 000000000 01111111 112345554454433211 12244555555557788
Q ss_pred HHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHh--HhcCC-----CcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHh
Q 007863 294 AEVRIAAAGKVTKICRILNPELAIQHILPCVK--ELSSD-----SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL 366 (587)
Q Consensus 294 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~--~~~~d-----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 366 (587)
.+|...|-..|.++...++...+...++..+. ..-.+ .++.+|......++.-.. .....+.++.++...
T Consensus 251 ~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~---Aa~~~~~~~~i~~~~ 327 (501)
T PF13001_consen 251 SSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI---AATSFPNILQIVFDG 327 (501)
T ss_pred chHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH---HHhCCccHHHHHhcc
Confidence 89999999999988887777777777777776 21111 256777777666654211 111234455566666
Q ss_pred cCCC--ChHHHHHHHHHh---HHhhhhhchhhHhhhhHHHHH----HHhc--------CCCcHHHHHHHHHHHHHHHhhC
Q 007863 367 LKDE--FPDVRLNIISKL---DQVNQVIGIDLLSQSLLPAIV----ELAE--------DRHWRVRLAIIEYIPLLASQLG 429 (587)
Q Consensus 367 l~d~--~~~vr~~a~~~l---~~i~~~~~~~~~~~~~~~~l~----~~~~--------~~~~~vr~~~~~~l~~l~~~~~ 429 (587)
+.+. +..+|..+...+ .......+.... +.+-|.+. ..+. ..+...|..+.+++|.+++..+
T Consensus 328 l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l-~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p 406 (501)
T PF13001_consen 328 LYSDNTNSKLKSLALQFIRGSSWIFKHISPQIL-KLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAP 406 (501)
T ss_pred ccCCccccccchhcchhhhcchHHhhhcCHHHH-HHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCc
Confidence 6666 677888888888 666666554432 22333332 2332 2356789999999999988665
Q ss_pred hhhHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhh-----hhchHHHHH-hhhcCCccHHHHHHHHHHHHh
Q 007863 430 VGFFD-DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA-----MQHIVPQVL-EMINNPHYLYRMTILQAISLL 502 (587)
Q Consensus 430 ~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~~~~~l~-~~l~~~~~~~r~~a~~~l~~l 502 (587)
.-+.. -.++..++..+.++..++|...-++|..+...+....- ....+..+. ....+....+|.+|+++...+
T Consensus 407 ~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~ 486 (501)
T PF13001_consen 407 SLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANAC 486 (501)
T ss_pred ccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 43211 24566666667888999999999999988887654211 111111121 122344566788888777766
Q ss_pred hc
Q 007863 503 AP 504 (587)
Q Consensus 503 ~~ 504 (587)
.+
T Consensus 487 fp 488 (501)
T PF13001_consen 487 FP 488 (501)
T ss_pred CC
Confidence 65
No 131
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=98.12 E-value=0.0052 Score=69.69 Aligned_cols=291 Identities=13% Similarity=0.146 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh-hh-----hhhchHHHHH
Q 007863 180 RRSAATNLGKFAATVEA------AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QD-----CVAHILPVIV 247 (587)
Q Consensus 180 R~~a~~~l~~l~~~~~~------~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~-----~~~~l~~~l~ 247 (587)
|....+-|..++.+.-. ..+|..+-+.+.....+.+..++..|+..|..++..+-+ ++ +.+.++.-+.
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence 55555555555544322 244555666666654455577899999999888765543 21 2333444443
Q ss_pred H-hcCCCchHHHHHHHHHHHHHHHHhCC--CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH------HHHHH
Q 007863 248 N-FSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP------ELAIQ 318 (587)
Q Consensus 248 ~-~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~ 318 (587)
. +.+..+..+|...++++..+....+. ...|+.++.++.....++++.+-..|...+..+....-. .....
T Consensus 1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~ 1268 (1780)
T PLN03076 1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT 1268 (1780)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH
Confidence 3 33466789999999999998876554 235778888888888888888888888888777653211 11223
Q ss_pred hHHHHHhHhcCCC-cHHHHHHHHHHHHhhhhhh-----------------------------------chHHHHHhHHHH
Q 007863 319 HILPCVKELSSDS-SQHVRSALATVIMGMAPIL-----------------------------------GKDATIEQLLPI 362 (587)
Q Consensus 319 ~~~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~-----------------------------------~~~~~~~~l~~~ 362 (587)
.++..+.++.+.. +..+--.++..+..++..+ +.+......+|+
T Consensus 1269 DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pL 1348 (1780)
T PLN03076 1269 DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPL 1348 (1780)
T ss_pred HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence 4445555444322 2233333333333221111 011112334555
Q ss_pred HHH---hcCCCChHHHHHHHHHhHHhhhhhchh--------hHhhhhHHHHHHHhc-----------------C-CCc--
Q 007863 363 FLS---LLKDEFPDVRLNIISKLDQVNQVIGID--------LLSQSLLPAIVELAE-----------------D-RHW-- 411 (587)
Q Consensus 363 l~~---~l~d~~~~vr~~a~~~l~~i~~~~~~~--------~~~~~~~~~l~~~~~-----------------~-~~~-- 411 (587)
+.. +..|+.++||..|+..|-.+....|.. .+...+.|.+..+-. + +++
T Consensus 1349 L~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 1428 (1780)
T PLN03076 1349 LAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQ 1428 (1780)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhh
Confidence 543 467899999999999999988877743 123345555543211 0 011
Q ss_pred --HHHHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh
Q 007863 412 --RVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 470 (587)
Q Consensus 412 --~vr~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 470 (587)
.+...+..++..++..+.. ....+.++.++..++..++..+-..+..+|..++...|..
T Consensus 1429 ~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~ 1494 (1780)
T PLN03076 1429 DAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHL 1494 (1780)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhcc
Confidence 1244455555555544422 1134556667777888888889899999999999887765
No 132
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.0015 Score=64.41 Aligned_cols=146 Identities=25% Similarity=0.230 Sum_probs=110.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH-------HHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhh----h
Q 007863 282 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL-------AIQHILPCVKELSSDSSQHVRSALATVIMGMAPI----L 350 (587)
Q Consensus 282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-------~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~----~ 350 (587)
-|.+.+.++-.+.+||..|+..+-.+....+++. ..+.=...+.+++.|+-+.||..|...+..+... +
T Consensus 176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 4677778889999999999999888876665542 2233455677889999999999998777665543 3
Q ss_pred chHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 007863 351 GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (587)
Q Consensus 351 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 427 (587)
++....+-+-.++..+-.|...+||.++..++..+...-......+.++|.+.-.+.|...+||.+++..+..+-..
T Consensus 256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 44444443444455666788899999999999999866555556678899888889999999999999988877543
No 133
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.08 E-value=0.0027 Score=59.10 Aligned_cols=200 Identities=15% Similarity=0.138 Sum_probs=128.4
Q ss_pred cCCCChHHHHHHHHHhHHhhhh-hchhh---HhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC----hhhHHHHHH
Q 007863 367 LKDEFPDVRLNIISKLDQVNQV-IGIDL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGFFDDKLG 438 (587)
Q Consensus 367 l~d~~~~vr~~a~~~l~~i~~~-~~~~~---~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~ 438 (587)
+.+.....|..++..+..+... +-.+. ....+++.+.+.++....+-+..+++.++.++-.+| .+.+...+.
T Consensus 52 l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~ 131 (309)
T PF05004_consen 52 LTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELK 131 (309)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Confidence 3444566666666665555422 11111 123456666666655555666677777877776655 344556788
Q ss_pred HHHHHHcCCCc--hHHHHHHHHHHHHHHHHhChhh-hhh---chHHHHHhh--h-cC---------CccHHHHHHHHHHH
Q 007863 439 ALCMQWLKDKV--YSIRDAAANNVKRLAEEFGPDW-AMQ---HIVPQVLEM--I-NN---------PHYLYRMTILQAIS 500 (587)
Q Consensus 439 ~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~-~~~---~~~~~l~~~--l-~~---------~~~~~r~~a~~~l~ 500 (587)
|.+.+.+.|.. ..+|..++.+|+.++-..+.+. -.. ..+..++.. . .+ ++..+..+|+.+.+
T Consensus 132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~ 211 (309)
T PF05004_consen 132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWA 211 (309)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHH
Confidence 88888887765 4677888888887766444431 112 122211111 1 11 23578999999999
Q ss_pred HhhcccChH---HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch---H---HHHHhHHHHHHHhcCCCC
Q 007863 501 LLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---S---VVEKSIRPCLVELSEDPD 566 (587)
Q Consensus 501 ~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~---~~~~~i~~~l~~l~~d~~ 566 (587)
-+...++.. ...+..+|.+..+|..++.+||.+|-++|..+++.... + ...+.+...+.+|.+|..
T Consensus 212 lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~dS~ 286 (309)
T PF05004_consen 212 LLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATDSS 286 (309)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHhcc
Confidence 998877763 34566889999999999999999999999999876542 1 234567888888877763
No 134
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.06 E-value=0.00012 Score=74.13 Aligned_cols=147 Identities=16% Similarity=0.110 Sum_probs=108.5
Q ss_pred hhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHh
Q 007863 120 QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA----LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE 195 (587)
Q Consensus 120 ~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~----~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~ 195 (587)
..+...+.|.+.+..+......+..-...++++..+.+.+ ..+.++|++.+.+.-++..||-....++..+....+
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 3455667788777666555556666666666766677654 456788888888888888888888888887766554
Q ss_pred h--hhhHHHHHHHHHHhcccCc---hhHHHHHHHHHHHHhcccCh---hhhhhchHHHHHHhcCCCchHHHHHHHHHHH
Q 007863 196 A--AHLKSEIMSIFEELTQDDQ---DSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLY 266 (587)
Q Consensus 196 ~--~~~~~~i~~~l~~l~~d~~---~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~ 266 (587)
. ....+.++|.+..+..|.+ -.||..|.+++..+.+..|. ..+.+.++..+.+.+.|+-..||..|+++=+
T Consensus 942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 3 4567778888888877765 46888888888888887776 3456678888888888888888888887544
No 135
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=98.03 E-value=0.016 Score=56.36 Aligned_cols=173 Identities=16% Similarity=0.129 Sum_probs=115.4
Q ss_pred hhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh--hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC
Q 007863 198 HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE 275 (587)
Q Consensus 198 ~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~ 275 (587)
.+++.++..+......++..||..++..+..+.+.+.+ +...+.++..+..-+-|..+.||..|..+|..+-..-+.+
T Consensus 87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne 166 (885)
T COG5218 87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE 166 (885)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Confidence 45556666666777888888999999888888888776 4455667777777777888899999988888765433322
Q ss_pred CcccchHHHHHHhc-CCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHH-HHHHhhhhhhchH
Q 007863 276 PTRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALA-TVIMGMAPILGKD 353 (587)
Q Consensus 276 ~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~-~~l~~l~~~~~~~ 353 (587)
. +.+...+...+ +|++.+||..|+-.+..= +.-.|++.....|-+...|.... +++..++.....
T Consensus 167 e--n~~~n~l~~~vqnDPS~EVRr~allni~vd----------nsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~l- 233 (885)
T COG5218 167 E--NRIVNLLKDIVQNDPSDEVRRLALLNISVD----------NSTYPCILERARDVSGANRRMVYERCLPRIGDLKSL- 233 (885)
T ss_pred H--HHHHHHHHHHHhcCcHHHHHHHHHHHeeeC----------CCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhc-
Confidence 1 23344444433 688889998887554321 34567788888887766665543 455555432211
Q ss_pred HHHHhHHHHHHHhcCCCChHHHHHHHHHhHH
Q 007863 354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384 (587)
Q Consensus 354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 384 (587)
.....++ .+...+.|.+..|+.++...+..
T Consensus 234 si~kri~-l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 234 SIDKRIL-LMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred cccceeh-hhhhcchhhhhhHHHHHHHHHHH
Confidence 1122333 67778889989999888887765
No 136
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.97 E-value=1.2e-05 Score=53.17 Aligned_cols=51 Identities=25% Similarity=0.218 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHHHhhhch--HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 007863 529 NIKFNVAKVLQSLIPIVDQ--SVVEKSIRPCLVELSEDPDVDVRFFATQALQS 579 (587)
Q Consensus 529 ~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~ 579 (587)
.||..|+.+|+.+....+. ..+...++|.|..++.|+++.||..|..||++
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 4566666666655433322 24455666666666666666666666666654
No 137
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.92 E-value=4e-05 Score=50.64 Aligned_cols=53 Identities=26% Similarity=0.306 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhhhhhhch--HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHh
Q 007863 333 QHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 385 (587)
Q Consensus 333 ~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i 385 (587)
|.||..++.+|+.++...+. ..+.+.++|.+..+++|+++.||..++.+|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 56778888887776644432 235567777777778877778888887777653
No 138
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.91 E-value=0.036 Score=60.68 Aligned_cols=145 Identities=14% Similarity=0.052 Sum_probs=92.0
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhh--hhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHH
Q 007863 435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC 512 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~ 512 (587)
..+.|.+...+...+..+|..|...+|.+....+...+ .+.++...+..+.|....+|..+++....+....+...-.
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 34677777888888999999999999998876554433 2456666667788899999999999888877543221111
Q ss_pred HhHHHHHHhhcCCCCccHHHHHHHHHHHHHh-hhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863 513 SQLLPVVINASKDRVPNIKFNVAKVLQSLIP-IVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 513 ~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~-~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~ 582 (587)
..++..+- ..|.++.+|.....++..+-. .+.-..... ++..+.+.+.|..+.||..|...|.++.+
T Consensus 338 ~~~~~~l~--~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 338 STILLALR--ERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred HHHHHHHH--hhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 11222222 234455555444433332211 111112222 56666677889999999999999988876
No 139
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.89 E-value=1.7e-05 Score=44.83 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=21.1
Q ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHH
Q 007863 554 IRPCLVELSEDPDVDVRFFATQALQSKDQV 583 (587)
Q Consensus 554 i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~ 583 (587)
++|.+.++++|++++||..|+++++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 467777777777777777777777777664
No 140
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.89 E-value=0.0099 Score=64.81 Aligned_cols=321 Identities=16% Similarity=0.106 Sum_probs=166.9
Q ss_pred hhcCchhHHHHHHHHHHHHHHhhcChh---------hHhhhhHHHHHHhhcC--CCCcchhhHHhh-----hhhhccCC-
Q 007863 94 LCTVEETCVRDKAVESLCRIGSQMREQ---------DVVEHFIPLVKRLAAG--EWFTARVSSCGL-----FHVAYPSA- 156 (587)
Q Consensus 94 l~~~~~~~vr~~a~~~l~~l~~~~~~~---------~~~~~ll~~~~~l~~~--~~~~~r~~a~~l-----~~~~~~~~- 156 (587)
++.++|..||.-..-++..+.+.+.|+ ++...++..+..+.+. +++..+..-..- +..++.-.
T Consensus 58 ~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d 137 (1266)
T KOG1525|consen 58 LLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLED 137 (1266)
T ss_pred HhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccc
Confidence 567889999999999999998877653 1222233333333322 233332221111 11122222
Q ss_pred CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH----HhcccCchhHHHHHHHHHHHHhcc
Q 007863 157 PEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFE----ELTQDDQDSVRLLAVEGCGALGKL 232 (587)
Q Consensus 157 ~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~----~l~~d~~~~vr~~a~~~l~~l~~~ 232 (587)
.++....++.++..+..++.+.--......++.+..... .....++.++. ..-.+....-+..|..++..++..
T Consensus 138 ~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d--~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~ 215 (1266)
T KOG1525|consen 138 CQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEED--TVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADN 215 (1266)
T ss_pred hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhh
Confidence 234667777777777755544322224444444444332 22233333332 222334445555566666665554
Q ss_pred cChhhhhhchHHHHHHhc-CCC--chHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHH
Q 007863 233 LEPQDCVAHILPVIVNFS-QDK--SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR 309 (587)
Q Consensus 233 ~~~~~~~~~l~~~l~~~~-~d~--~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 309 (587)
+.+ .+-..+...+ .+. -..++...-+.+-.+....+. ....++|.+..-+...+..+|..|+..+|.+..
T Consensus 216 ~~~-----~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~--ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~ 288 (1266)
T KOG1525|consen 216 LED-----TIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQ--LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFS 288 (1266)
T ss_pred hch-----hHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHH--HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 432 2333332222 111 112233333333333322111 012467777776777788999999999999877
Q ss_pred hhCHHHH--HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHH--HHHhHHh
Q 007863 310 ILNPELA--IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNI--ISKLDQV 385 (587)
Q Consensus 310 ~~~~~~~--~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a--~~~l~~i 385 (587)
..+.... .+.++..+...+.|.+..||..+.+....+.-.-+ .........+.....|.++.+|... +-....+
T Consensus 289 ~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~--~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v 366 (1266)
T KOG1525|consen 289 DKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNP--SIAKASTILLALRERDLDEDVRVRTQVVIVACDV 366 (1266)
T ss_pred cchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCc--hhhhHHHHHHHHHhhcCChhhhheeeEEEEEeeh
Confidence 5443322 35677888888899999999999988776653321 1111111122222234444444332 2211111
Q ss_pred hhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 007863 386 NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (587)
Q Consensus 386 ~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 427 (587)
... ....... ++..+.+.+.|..|.||..|+.-+..+.+.
T Consensus 367 ~~~-~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 367 MKF-KLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hHh-hhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 110 0011112 555666677899999999999998888773
No 141
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.84 E-value=0.013 Score=52.96 Aligned_cols=228 Identities=14% Similarity=0.152 Sum_probs=135.4
Q ss_pred hHhcCCCcHHHHHHHHHHHHhhhhhhchHH----HHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhh--hchhhHhhhh
Q 007863 325 KELSSDSSQHVRSALATVIMGMAPILGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV--IGIDLLSQSL 398 (587)
Q Consensus 325 ~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~--~~~~~~~~~~ 398 (587)
...+++.++.+|..+...|+.+...++++. ..+.+...+..-+.|. ..+. .++.++..+... ++.+. ...+
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~-~~l~gl~~L~~~~~~~~~~-~~~i 81 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQ-PALKGLLALVKMKNFSPES-AVKI 81 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHH-HHHHHHHHHHhCcCCChhh-HHHH
Confidence 345566777777777777777766665332 2234555555556443 3333 335555555522 12221 1223
Q ss_pred HHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHHhChhhhh
Q 007863 399 LPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPDWAM 473 (587)
Q Consensus 399 ~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 473 (587)
+..+.+... .-....|..+.+.+..+........ ..+.++..+.+.+ +..+++--..+.+.+..+...+....+.
T Consensus 82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~ 161 (262)
T PF14500_consen 82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFA 161 (262)
T ss_pred HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhH
Confidence 333332211 2335678888888888876643221 1233444444443 5678888888888888888877654445
Q ss_pred hchHHHHHhhh--------cCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhh
Q 007863 474 QHIVPQVLEMI--------NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 474 ~~~~~~l~~~l--------~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~ 545 (587)
+.+...+.-.. +||....|..-..++..... ....+.+..+|.+++-+.+..+.++.-++++|...++.+
T Consensus 162 e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 162 EDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENY 239 (262)
T ss_pred HHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHC
Confidence 55555554431 23333344444444444332 223467899999999999999999999999999999999
Q ss_pred chHHHHHhHHHH
Q 007863 546 DQSVVEKSIRPC 557 (587)
Q Consensus 546 ~~~~~~~~i~~~ 557 (587)
+.....+++.+.
T Consensus 240 ~~~~~~~~~~~i 251 (262)
T PF14500_consen 240 GADSLSPHWSTI 251 (262)
T ss_pred CHHHHHHHHHHH
Confidence 987555444443
No 142
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00045 Score=66.22 Aligned_cols=158 Identities=20% Similarity=0.171 Sum_probs=101.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchH
Q 007863 164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL 243 (587)
Q Consensus 164 l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 243 (587)
.-.++.+++.|.++..|...+-+++.-.-.-+.......+++. -.+|.++.||++|+.+++-++-. ....+.
T Consensus 517 add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~---avsD~nDDVrRAAViAlGfvc~~-----D~~~lv 588 (926)
T COG5116 517 ADDYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHY---AVSDGNDDVRRAAVIALGFVCCD-----DRDLLV 588 (926)
T ss_pred HHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhhee---ecccCchHHHHHHHHheeeeEec-----Ccchhh
Confidence 3346667778888888877666655433222232333333332 36778888999888888765421 122333
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhHH
Q 007863 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHIL 321 (587)
Q Consensus 244 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~ 321 (587)
..+.-+..+-++.||...+-+||-.+..-| .+..+.++..+..|.+.-||++|+-+.+-+.-...++ .....+.
T Consensus 589 ~tvelLs~shN~hVR~g~AvaLGiacag~G----~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~ 664 (926)
T COG5116 589 GTVELLSESHNFHVRAGVAVALGIACAGTG----DKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRII 664 (926)
T ss_pred HHHHHhhhccchhhhhhhHHHhhhhhcCCc----cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHH
Confidence 444444455688899988888887665433 3346677778888888889999988888887766655 2234566
Q ss_pred HHHhHhcCCCcH
Q 007863 322 PCVKELSSDSSQ 333 (587)
Q Consensus 322 ~~l~~~~~d~~~ 333 (587)
..+.+.+.|++.
T Consensus 665 k~f~~vI~~Khe 676 (926)
T COG5116 665 KKFNRVIVDKHE 676 (926)
T ss_pred HHHHHHHhhhhH
Confidence 666666666543
No 143
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.015 Score=57.69 Aligned_cols=144 Identities=23% Similarity=0.234 Sum_probs=106.3
Q ss_pred hHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccc-------hHHHHHHhcCCChHHHHHHHHHhHHHHHH----h
Q 007863 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD-------VVPAYVRLLRDNEAEVRIAAAGKVTKICR----I 310 (587)
Q Consensus 242 l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~-------l~~~l~~~l~d~~~~vr~~a~~~l~~l~~----~ 310 (587)
.-|.+.+.++-.|..||..|+..+-.+....+++....+ =...+..++.|+-+.||..|+..+..+.. .
T Consensus 175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 446777788889999999999988877766555442221 23456678999999999988877655443 3
Q ss_pred hCHHHHHHhHHHH-HhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhh
Q 007863 311 LNPELAIQHILPC-VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (587)
Q Consensus 311 ~~~~~~~~~~~~~-l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~ 386 (587)
+++... .+++.. +-.+..|....||.+..+.+..+...-......++++|.+-..+.|.+..||.++...+..+-
T Consensus 255 iP~~i~-~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 255 IPPTIL-IDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred cCHHHH-HHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 444433 333333 345667888899999999999887665555677889999999999999999999988877654
No 144
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.79 E-value=0.062 Score=55.42 Aligned_cols=149 Identities=15% Similarity=0.176 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh---hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh-
Q 007863 433 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS- 508 (587)
Q Consensus 433 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~- 508 (587)
|...++|++.+.+......+|..-..+|..+........ ....++|.+.+.+.=++..+|..+..++..+....+.
T Consensus 864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 445689999998886677788888888888887665543 2478899999998889999999999999888765443
Q ss_pred -HHHHHhHHHHHHhhcCCCC---ccHHHHHHHHHHHHHhhhchH---HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863 509 -EITCSQLLPVVINASKDRV---PNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 509 -~~~~~~~l~~l~~~l~d~~---~~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~ 581 (587)
......++|.++.+-.|++ ..||..|+++++.+....+.. .+...++..|.+.+.|+.+-||..|+.+=+...
T Consensus 944 ~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 944 QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 2367889999999888876 579999999999998866654 677889999999999999999999998766554
No 145
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.75 E-value=0.019 Score=51.98 Aligned_cols=227 Identities=11% Similarity=0.182 Sum_probs=136.1
Q ss_pred HHhcCCChHHHHHHHHHhHHHHHHhhCHHHH----HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhh--hchHHHHHhH
Q 007863 286 VRLLRDNEAEVRIAAAGKVTKICRILNPELA----IQHILPCVKELSSDSSQHVRSALATVIMGMAPI--LGKDATIEQL 359 (587)
Q Consensus 286 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~l 359 (587)
-..+.++++.+|..|+..|+.+...++++.. ...++..+...+.| ...+.. ++..+..+... ++.+. ...+
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~~~~-~l~gl~~L~~~~~~~~~~-~~~i 81 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HACVQP-ALKGLLALVKMKNFSPES-AVKI 81 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-HhhHHH-HHHHHHHHHhCcCCChhh-HHHH
Confidence 3456778888888888888888888776522 23455555555533 223333 35666555522 22222 2233
Q ss_pred HHHHHHhcC--CCChHHHHHHHHHhHHhhhhhchh--hHhhhhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhChhhHH
Q 007863 360 LPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFD 434 (587)
Q Consensus 360 ~~~l~~~l~--d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~~~~ 434 (587)
+..+.+-.. .-....|..+...+..+....... .+...++..+...+. .++|+.=..+.+.+..+...+....+.
T Consensus 82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~ 161 (262)
T PF14500_consen 82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFA 161 (262)
T ss_pred HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhH
Confidence 333332221 224567888888887777654321 122345555555554 578998888888888888877765555
Q ss_pred HHHHHHHHHHc--------CCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhccc
Q 007863 435 DKLGALCMQWL--------KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM 506 (587)
Q Consensus 435 ~~l~~~l~~~l--------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~ 506 (587)
+.+...+.-.+ +|+..--|+.-...|..... ....|.+..+|.+.+-+.++...++.-++.++..+...+
T Consensus 162 e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 162 EDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENY 239 (262)
T ss_pred HHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHC
Confidence 66655554432 23322123333333333221 223356789999999999888889999999999999988
Q ss_pred ChHHHHHhHHH
Q 007863 507 GSEITCSQLLP 517 (587)
Q Consensus 507 ~~~~~~~~~l~ 517 (587)
|...+.+++.+
T Consensus 240 ~~~~~~~~~~~ 250 (262)
T PF14500_consen 240 GADSLSPHWST 250 (262)
T ss_pred CHHHHHHHHHH
Confidence 87654444433
No 146
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.74 E-value=0.006 Score=58.25 Aligned_cols=127 Identities=17% Similarity=0.214 Sum_probs=88.0
Q ss_pred CchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhc------CCccHHHHHHHHHHHHhhcccC--------------
Q 007863 448 KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN------NPHYLYRMTILQAISLLAPVMG-------------- 507 (587)
Q Consensus 448 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~------~~~~~~r~~a~~~l~~l~~~~~-------------- 507 (587)
....-|.+|++.+..+++.++... .+.+...+..+++ ..+|+.+.+|+..++.++....
T Consensus 223 d~~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 223 DSDTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred ccCCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 345679999999999998876552 1222222333332 3479999999999999986431
Q ss_pred -hHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHH
Q 007863 508 -SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577 (587)
Q Consensus 508 -~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al 577 (587)
.+.+..+++|.+. .-.+..|.+|..|++.+......++++. ...++|.+..++.+++.-|+..|+.|+
T Consensus 302 v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~-l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQ-LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHH-HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHH-HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1235677788877 3445688999999999999988877654 467999999999999999999998774
No 147
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.73 E-value=5.9e-05 Score=42.59 Aligned_cols=28 Identities=32% Similarity=0.428 Sum_probs=15.3
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 007863 243 LPVIVNFSQDKSWRVRYMVANQLYELCE 270 (587)
Q Consensus 243 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~ 270 (587)
+|.+.++++|++|+||.+|+.+|+.+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4555555555555555555555555543
No 148
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0017 Score=62.39 Aligned_cols=228 Identities=11% Similarity=0.026 Sum_probs=133.9
Q ss_pred HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhh
Q 007863 318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 397 (587)
Q Consensus 318 ~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~ 397 (587)
.++...+++++...+.-.-.++.-.++-+.-.-+.... +-.++.-.-..+...+..+....++-+. +|.++ .
T Consensus 445 ~eiye~lKe~l~nD~a~~geAa~~gMGl~mLgt~s~ea---i~dm~tya~ETqhe~i~Rglgig~aLi~--ygrqe---~ 516 (926)
T COG5116 445 REIYEKLKELLKNDRALLGEAAVYGMGLLMLGTWSVEA---IEDMRTYAGETQHERIKRGLGIGFALIL--YGRQE---M 516 (926)
T ss_pred HHHHHHHHHHHhcchhhhhhhhhhccceeeecCCCHHH---HHHHHHHhcchhhhhHHhhhhhhhhHhh--hhhHH---H
Confidence 34556666666555544444444443333211111111 1111111112233445555444444332 34443 2
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHhChhhhhhch
Q 007863 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI 476 (587)
Q Consensus 398 ~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 476 (587)
.-..|.+++.|.++..|...+-.+..---.-|... ++.-++.. ..|.+.+||.+|+-+||-++-. ....
T Consensus 517 add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~----vv~~lLh~avsD~nDDVrRAAViAlGfvc~~------D~~~ 586 (926)
T COG5116 517 ADDYINELLYDKDSILRYNGVFSLALAYVGTGNLG----VVSTLLHYAVSDGNDDVRRAAVIALGFVCCD------DRDL 586 (926)
T ss_pred HHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcch----hHhhhheeecccCchHHHHHHHHheeeeEec------Ccch
Confidence 34466778899999999887665543322223322 22233333 6899999999999999987632 1334
Q ss_pred HHHHHhhh-cCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--HHHHh
Q 007863 477 VPQVLEMI-NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKS 553 (587)
Q Consensus 477 ~~~l~~~l-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ 553 (587)
++...+++ .+.|+.||...+.+++..+...|.. ..+..+..+..|++.-||+.|+-+++.+.-...++ +-...
T Consensus 587 lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~ 662 (926)
T COG5116 587 LVGTVELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKR 662 (926)
T ss_pred hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHH
Confidence 55555554 5568999999999999988877654 45556667788999999999999999887665432 33345
Q ss_pred HHHHHHHhcCCCCc
Q 007863 554 IRPCLVELSEDPDV 567 (587)
Q Consensus 554 i~~~l~~l~~d~~~ 567 (587)
+...+..+.+|+..
T Consensus 663 I~k~f~~vI~~Khe 676 (926)
T COG5116 663 IIKKFNRVIVDKHE 676 (926)
T ss_pred HHHHHHHHHhhhhH
Confidence 55566666666554
No 149
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.63 E-value=0.0029 Score=65.34 Aligned_cols=226 Identities=15% Similarity=0.080 Sum_probs=149.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcc
Q 007863 156 APEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE---AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL 232 (587)
Q Consensus 156 ~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~---~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 232 (587)
.+++....+++.++.-+ . |-.|+..|+.+...-+ .-..---|.|...+++++...+.|-.-+-.+.++...
T Consensus 469 ~PPeQLPiVLQVLLSQv----H--RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAv 542 (1387)
T KOG1517|consen 469 TPPEQLPIVLQVLLSQV----H--RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAV 542 (1387)
T ss_pred CChHhcchHHHHHHHHH----H--HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhc
Confidence 34455556666554432 2 4457777777665321 0111223789999999999999998888888877654
Q ss_pred cCh---hhhhhchHHHHHHhcCC---CchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCC-hHHHHHHHHH
Q 007863 233 LEP---QDCVAHILPVIVNFSQD---KSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDN-EAEVRIAAAG 302 (587)
Q Consensus 233 ~~~---~~~~~~l~~~l~~~~~d---~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~a~~ 302 (587)
-+. +-+++..-..+.+.+.+ -+++-|..|+-.|..++..+.- ......++.+....++|. ++-.|.-++-
T Consensus 543 D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~i 622 (1387)
T KOG1517|consen 543 DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCI 622 (1387)
T ss_pred CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHH
Confidence 332 11222222233333433 2468899999999999876542 222346788888888885 7999999999
Q ss_pred hHHHHHHhhCHHHHH---HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhh----chH--------------HHHHhHHH
Q 007863 303 KVTKICRILNPELAI---QHILPCVKELSSDSSQHVRSALATVIMGMAPIL----GKD--------------ATIEQLLP 361 (587)
Q Consensus 303 ~l~~l~~~~~~~~~~---~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~----~~~--------------~~~~~l~~ 361 (587)
+|+.+-+.+....+. ......+..++.|+.+.||.+|+.+|+.+.... ... ...+...+
T Consensus 623 cLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~ 702 (1387)
T KOG1517|consen 623 CLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLII 702 (1387)
T ss_pred HHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHH
Confidence 999998877654331 234455667788999999999999999987653 110 11223333
Q ss_pred ----HHHHhcCCCChHHHHHHHHHhHHhhh
Q 007863 362 ----IFLSLLKDEFPDVRLNIISKLDQVNQ 387 (587)
Q Consensus 362 ----~l~~~l~d~~~~vr~~a~~~l~~i~~ 387 (587)
.+..+++|.++-||...+.+++.+..
T Consensus 703 ~~~~~ll~~vsdgsplvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 703 KGLMSLLALVSDGSPLVRTEVVVALSHFVV 732 (1387)
T ss_pred hhHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 46667788888999988888888763
No 150
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.61 E-value=0.035 Score=51.95 Aligned_cols=213 Identities=17% Similarity=0.169 Sum_probs=117.6
Q ss_pred HhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh-----------H
Q 007863 365 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF-----------F 433 (587)
Q Consensus 365 ~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~-----------~ 433 (587)
..+...++.||..++.+++-.+-. +. ......++.+...++..+..+|..+++.+..+.-..|.+. .
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Ll-d~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLL-DK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHh-Ch-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 444555555555555555544321 11 1122334444444444455555555555555554444322 2
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhh-hchHHHHHhhhcCC----ccHHHHHHHHHHHHhhcccC-
Q 007863 434 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM-QHIVPQVLEMINNP----HYLYRMTILQAISLLAPVMG- 507 (587)
Q Consensus 434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~~l~~~l~~~----~~~~r~~a~~~l~~l~~~~~- 507 (587)
...+..++...+.+.++++|..|++.++++.-.-.. .. ..++..+.-...+| +...|+.-..++..++....
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i--~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~ 189 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI--SDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPE 189 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHH
Confidence 345778888889989999999999999998753211 12 34555555444443 56788877777777765433
Q ss_pred -hHHHHHhHHHHHHhhcCCCC----ccHHHHHHHHHHHHHhhhchH--------------HHHHhHHHHHHHhcCCCCcc
Q 007863 508 -SEITCSQLLPVVINASKDRV----PNIKFNVAKVLQSLIPIVDQS--------------VVEKSIRPCLVELSEDPDVD 568 (587)
Q Consensus 508 -~~~~~~~~l~~l~~~l~d~~----~~vR~~a~~~l~~l~~~~~~~--------------~~~~~i~~~l~~l~~d~~~~ 568 (587)
.+.+.+.++|.+..+...+. +.-.....+....++...++. .........+.++..|+...
T Consensus 190 ~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~~~~~~~~~~~~~~~~~h~~La~~il~~i~~~~~~~ 269 (298)
T PF12719_consen 190 NQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDPSKLVKESNQEIQNESVHVDLAIDILNEILSDPEKE 269 (298)
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCChhhccCccccccccccHHHHHHHHHHHHHHhccccc
Confidence 23345666777766654432 222222333333333332221 22234566666777666655
Q ss_pred --HHHHHHHHHHHHH
Q 007863 569 --VRFFATQALQSKD 581 (587)
Q Consensus 569 --Vr~~a~~al~~l~ 581 (587)
.+..-.++|.++.
T Consensus 270 ~~~~k~~~~~L~~L~ 284 (298)
T PF12719_consen 270 KEERKALCKALSKLE 284 (298)
T ss_pred hHHHHHHHHHHhccc
Confidence 7777777777654
No 151
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.60 E-value=0.01 Score=62.45 Aligned_cols=163 Identities=20% Similarity=0.218 Sum_probs=96.5
Q ss_pred hhHHHHHHHhcC----CCcHHHHHHHHHHHHHHHhhChh----------------hHHHHHHHHHHHHcCCCchHHHHHH
Q 007863 397 SLLPAIVELAED----RHWRVRLAIIEYIPLLASQLGVG----------------FFDDKLGALCMQWLKDKVYSIRDAA 456 (587)
Q Consensus 397 ~~~~~l~~~~~~----~~~~vr~~~~~~l~~l~~~~~~~----------------~~~~~l~~~l~~~l~d~~~~vr~~a 456 (587)
.++..+..++.. .+..++..++-.++.+....... .+.+.+...+.......+...+..+
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 510 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 344444444432 34567777777777665433211 2234455555555566777889999
Q ss_pred HHHHHHHHHHhChhhhhhchHHHHHhhhcCC---ccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHH
Q 007863 457 ANNVKRLAEEFGPDWAMQHIVPQVLEMINNP---HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFN 533 (587)
Q Consensus 457 ~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~---~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~ 533 (587)
+++||++.. ...++.+...+.+. ...+|.+|++++..+.... ++...+.++|.+.+- ..++++|.+
T Consensus 511 LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I~~n~--~e~~EvRia 579 (618)
T PF01347_consen 511 LKALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPIFMNT--TEDPEVRIA 579 (618)
T ss_dssp HHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH-T--TS-HHHHHH
T ss_pred HHHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHHhcCC--CCChhHHHH
Confidence 999998752 45777777776665 5789999999999886544 223445555555442 236789999
Q ss_pred HHHHHHHHHhhhchHHHHHhHHHHHHH-hcCCCCccHHHHHHHHH
Q 007863 534 VAKVLQSLIPIVDQSVVEKSIRPCLVE-LSEDPDVDVRFFATQAL 577 (587)
Q Consensus 534 a~~~l~~l~~~~~~~~~~~~i~~~l~~-l~~d~~~~Vr~~a~~al 577 (587)
|...|-..-+. ...+..+.. +-.|++..|+......|
T Consensus 580 A~~~lm~~~P~-------~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 580 AYLILMRCNPS-------PSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHHT----------HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHHhcCCC-------HHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 98887765333 133444444 56888899988877665
No 152
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.19 Score=55.14 Aligned_cols=150 Identities=13% Similarity=0.162 Sum_probs=94.4
Q ss_pred hhhhHHHHHHHh-cCCCcHHHHHHHHHHHHHHH--hhC-hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh
Q 007863 395 SQSLLPAIVELA-EDRHWRVRLAIIEYIPLLAS--QLG-VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 470 (587)
Q Consensus 395 ~~~~~~~l~~~~-~~~~~~vr~~~~~~l~~l~~--~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 470 (587)
...++..+..+. .+.+|++|.++++.+..+.- .++ .+.-.+.+-..+...+.|.+.+||+.|+.+|..+...-...
T Consensus 1524 ~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~ 1603 (1710)
T KOG1851|consen 1524 QPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQ 1603 (1710)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccc
Confidence 345566665443 45689999999988876542 223 23334678888999999999999999999999888632222
Q ss_pred hhhhchHHHHHhh-hcCCccHHHHHHHHHHHHhhcccChH--HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhh
Q 007863 471 WAMQHIVPQVLEM-INNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 471 ~~~~~~~~~l~~~-l~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~ 545 (587)
+..+..-+..... ....+...+.+|...++++.-.++-. .+..+.+..+-....++ ..++.++-+++...-...
T Consensus 1604 ~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1604 FVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred cchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHh
Confidence 1111112222222 12235667778888899888655432 13344444444445554 788888888888775543
No 153
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.56 E-value=0.029 Score=52.51 Aligned_cols=69 Identities=23% Similarity=0.225 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccC
Q 007863 164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE 234 (587)
Q Consensus 164 l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 234 (587)
+-.++....+++++.||+.+.++||-++-.- ...-...++.+.+.++.+++.+|..|+.++..+.-..+
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld--~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLD--KELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 4455567778888889998888888766432 13334445555555555577788888777776655444
No 154
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.55 E-value=0.11 Score=51.82 Aligned_cols=149 Identities=11% Similarity=0.066 Sum_probs=110.1
Q ss_pred ChhhHHHHHHHHHHHHcCC----CchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhc-CCccHHHHHHHHHHHHhh
Q 007863 429 GVGFFDDKLGALCMQWLKD----KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLA 503 (587)
Q Consensus 429 ~~~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~~~r~~a~~~l~~l~ 503 (587)
|.......+.|++.....+ .++.+..+|--+|..+.- +..+ |...-+|.+...+. +|++.+|..|+-.++.+.
T Consensus 885 GeksvLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMC-lS~~-fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~ 962 (1128)
T COG5098 885 GEKSVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMC-LSFE-FCSEHLPLLITSMEKHPIPRIRANAVVGLGDFL 962 (1128)
T ss_pred chhHHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHH-HhHH-HHHHHHHHHHHHHhhCCCcceeccceeeccccc
Confidence 4333445566666665544 678888888888887653 3444 34556777776654 899999999999998887
Q ss_pred cccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHH
Q 007863 504 PVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 583 (587)
Q Consensus 504 ~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~ 583 (587)
-.+.. +.++.-..+.+-+.|.+..||.+++.++..+.-.-. .-...-++.+..++.|+|..+...|..-+-.+++.
T Consensus 963 vcfN~--~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq--~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098 963 VCFNT--TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ--LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred eehhh--hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccc--eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhc
Confidence 65532 456677788889999999999999999998864411 11235578888899999999999999888887763
No 155
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.42 E-value=0.14 Score=49.67 Aligned_cols=193 Identities=11% Similarity=0.077 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHH
Q 007863 183 AATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA 262 (587)
Q Consensus 183 a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~ 262 (587)
.+..+-.+.....+++..++++-++..++.+....++.. ...+. . .+.....+..++..+++.+...++
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f-----~~~~~-~-----~~~~~~~fl~lL~~~d~~i~~~a~ 122 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLF-----HDDAL-L-----KKKTWEPFFNLLNRQDQFIVHMSF 122 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHH-----HHHhh-c-----cccchHHHHHHHcCCchhHHHHHH
Confidence 333444444445556777777777777777753333321 11110 0 012222333366677889999999
Q ss_pred HHHHHHHHHhCCCCcccc----hHHHHHHhcCCC-hHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCC--cH
Q 007863 263 NQLYELCEAVGPEPTRSD----VVPAYVRLLRDN-EAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDS--SQ 333 (587)
Q Consensus 263 ~~l~~l~~~~~~~~~~~~----l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~--~~ 333 (587)
..+..++..-.. ..... +.+.+...++.. +...+..++.++..+...-.-. .+....++.+.++++.. +.
T Consensus 123 ~iLt~l~~~~~~-~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~ 201 (429)
T cd00256 123 SILAKLACFGLA-KMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGF 201 (429)
T ss_pred HHHHHHHhcCcc-ccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccH
Confidence 998888653222 11112 333444444432 3566677778887776532111 22233455555555332 33
Q ss_pred HHHHHHHHHHHhhhh--hhchHHHHHhHHHHHHHhcCCCC-hHHHHHHHHHhHHhhh
Q 007863 334 HVRSALATVIMGMAP--ILGKDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQ 387 (587)
Q Consensus 334 ~vr~~a~~~l~~l~~--~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~i~~ 387 (587)
.....++-++..+.- ..........++|.+..++++.. +.|-.-++..+.++..
T Consensus 202 Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 202 QLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 444555444443321 11011111346777777776642 3444444555555554
No 156
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=97.40 E-value=0.033 Score=57.83 Aligned_cols=164 Identities=18% Similarity=0.203 Sum_probs=100.2
Q ss_pred hhhHHHHHHHhcC----CCcHHHHHHHHHHHHHHHhhC--h--------hhHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 007863 396 QSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLG--V--------GFFDDKLGALCMQWLKDKVYSIRDAAANNVK 461 (587)
Q Consensus 396 ~~~~~~l~~~~~~----~~~~vr~~~~~~l~~l~~~~~--~--------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 461 (587)
..++..+..++.+ ++..+|..++-.++.+..... . +.+.+.+...+.....+.+...+..++++||
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 3566666666654 356688888888888776331 1 1233334444444445566677888888888
Q ss_pred HHHHHhChhhhhhchHHHHHhhhc-C--CccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHH
Q 007863 462 RLAEEFGPDWAMQHIVPQVLEMIN-N--PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL 538 (587)
Q Consensus 462 ~l~~~~~~~~~~~~~~~~l~~~l~-~--~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l 538 (587)
++.. ...++.+...+. + ....+|.+|+.++..++...... ..+.+++.+.+ .+.++++|..|+..+
T Consensus 472 N~g~--------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~-v~~~l~~i~~n--~~e~~EvRiaA~~~l 540 (574)
T smart00638 472 NAGH--------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK-VQEVLLPIYLN--RAEPPEVRMAAVLVL 540 (574)
T ss_pred ccCC--------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHcC--CCCChHHHHHHHHHH
Confidence 7653 223334443333 2 34679999999999887644332 44455555533 235788999999888
Q ss_pred HHHHhhhchHHHHHhHHHHHHH-hcCCCCccHHHHHHHHH
Q 007863 539 QSLIPIVDQSVVEKSIRPCLVE-LSEDPDVDVRFFATQAL 577 (587)
Q Consensus 539 ~~l~~~~~~~~~~~~i~~~l~~-l~~d~~~~Vr~~a~~al 577 (587)
-..-+.. ..+..+.. +..|++..|+......|
T Consensus 541 m~t~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 541 METKPSV-------ALLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred HhcCCCH-------HHHHHHHHHHhhcCcHHHHHHhHHhh
Confidence 7764432 33444444 56788888887766543
No 157
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.40 E-value=0.19 Score=57.70 Aligned_cols=246 Identities=12% Similarity=0.108 Sum_probs=140.1
Q ss_pred HHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhccc----
Q 007863 161 KTELRTIYRQ-LCQDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL---- 233 (587)
Q Consensus 161 ~~~l~~~l~~-l~~~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~---- 233 (587)
.+.++..+.. +....+..||+.+++++..+...... ..-|..++.++.....++.+.+-..|.+++..+.+..
T Consensus 1180 QkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l 1259 (1780)
T PLN03076 1180 QNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYI 1259 (1780)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhc
Confidence 3444444444 44556778999888888887765543 2245667777777777777777677777776655431
Q ss_pred Ch--hhhhhchHHHHHHhcCCC-chHHHHHHHHHHHHHHHHhCC--------------------------CC-----cc-
Q 007863 234 EP--QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGP--------------------------EP-----TR- 278 (587)
Q Consensus 234 ~~--~~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~--------------------------~~-----~~- 278 (587)
+. ......++..+..+.+.. +..+-..|+..|..++..+-. +. ..
T Consensus 1260 ~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1339 (1780)
T PLN03076 1260 TETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKD 1339 (1780)
T ss_pred cccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccch
Confidence 11 123445556665555433 344445555555544333200 00 00
Q ss_pred ---cchHHHHH---HhcCCChHHHHHHHHHhHHHHHHhhCHH----HH----HHhHHHHHhHhcC---------------
Q 007863 279 ---SDVVPAYV---RLLRDNEAEVRIAAAGKVTKICRILNPE----LA----IQHILPCVKELSS--------------- 329 (587)
Q Consensus 279 ---~~l~~~l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~----~~~~~~~l~~~~~--------------- 329 (587)
.-.+|++. .+..|...+||..|+..|-.+....|.. .| ..-++|.+..+-.
T Consensus 1340 ~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~ 1419 (1780)
T PLN03076 1340 DHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGV 1419 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 11344444 4467899999999999988777766543 22 2234455432210
Q ss_pred -------CCcHHHHHHHHHHHHhhhhhhch-----HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh---hH
Q 007863 330 -------DSSQHVRSALATVIMGMAPILGK-----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LL 394 (587)
Q Consensus 330 -------d~~~~vr~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~ 394 (587)
+.+.+...++..++..+...+.. ....+.++..+..+...++..+-.....+|..++...|.. +.
T Consensus 1420 ~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~ 1499 (1780)
T PLN03076 1420 DGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEK 1499 (1780)
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHH
Confidence 11223456666666666554432 1234455556666677788888888888988888666532 22
Q ss_pred hhhhHHHHHHHh
Q 007863 395 SQSLLPAIVELA 406 (587)
Q Consensus 395 ~~~~~~~l~~~~ 406 (587)
...++..+.+++
T Consensus 1500 W~~i~~~~~~lf 1511 (1780)
T PLN03076 1500 WLEVVLSLKEAA 1511 (1780)
T ss_pred HHHHHHHHHHHH
Confidence 345555555544
No 158
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.15 Score=56.91 Aligned_cols=234 Identities=14% Similarity=0.171 Sum_probs=154.5
Q ss_pred hCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCC-CChHHHHHHHHHhHHhhhhh
Q 007863 311 LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVI 389 (587)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~i~~~~ 389 (587)
++++.+.......+...+..+++..|..+..+++.++...+...+...+...+..-+++ .++..|..-.-+++.+-+..
T Consensus 868 lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyv 947 (2067)
T KOG1822|consen 868 LGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYV 947 (2067)
T ss_pred cCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc
Confidence 34555545556666777788899999999999999999888777666666666555555 45666776666677766655
Q ss_pred c---hhhHhhhhHHHHHHHhcCCCc-HHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHc-CC--CchHHHHHHHHHH
Q 007863 390 G---IDLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWL-KD--KVYSIRDAAANNV 460 (587)
Q Consensus 390 ~---~~~~~~~~~~~l~~~~~~~~~-~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l-~d--~~~~vr~~a~~~l 460 (587)
| ..+....-+..+..+..|++. .|+...+..+..+....++-+. ...-+..+..++ .+ ...+|+..--+++
T Consensus 948 gs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~ 1027 (2067)
T KOG1822|consen 948 GSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCF 1027 (2067)
T ss_pred cCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhcccc
Confidence 4 444444455677888888765 9999999999888876665431 122233333333 33 3345666555555
Q ss_pred H------HHHHHhChhh-----------hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhc
Q 007863 461 K------RLAEEFGPDW-----------AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINAS 523 (587)
Q Consensus 461 ~------~l~~~~~~~~-----------~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l 523 (587)
. .+....|++. +....+-...-++.+++.-+..+++.++.++.-.-+.....+.+++.+..++
T Consensus 1028 ~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l 1107 (2067)
T KOG1822|consen 1028 NGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLL 1107 (2067)
T ss_pred ccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHh
Confidence 5 5665555542 1111222222234555788999999999998766555555778888888888
Q ss_pred CCCCccHHHHHHHHHHHHHhh
Q 007863 524 KDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 524 ~d~~~~vR~~a~~~l~~l~~~ 544 (587)
....--.|......+.++...
T Consensus 1108 ~s~~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1108 SSSYLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred cchhhhhhhhHHhhhhHHhHH
Confidence 887777888788777777665
No 159
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.004 Score=64.43 Aligned_cols=207 Identities=18% Similarity=0.130 Sum_probs=141.8
Q ss_pred chhhHHhhhhhhccCCCHH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHhccc
Q 007863 141 ARVSSCGLFHVAYPSAPEA----LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE---AAHLKSEIMSIFEELTQD 213 (587)
Q Consensus 141 ~r~~a~~l~~~~~~~~~~~----~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~---~~~~~~~i~~~l~~l~~d 213 (587)
.|.-|..+++.+....+=. .--.++|.++++++++..+.|...+-...++...=+ .+.+++..-..+.+.+.+
T Consensus 486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 3666777777765544211 223688999999999999999887777766654311 112222222233334444
Q ss_pred -C--chhHHHHHHHHHHHHhcccCh---hhhhhchHHHHHHhcCCC-chHHHHHHHHHHHHHHHHhCCC---CcccchHH
Q 007863 214 -D--QDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPE---PTRSDVVP 283 (587)
Q Consensus 214 -~--~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~ 283 (587)
. +++-|..|+-.|..+...+.. ......++.+....++|+ .|-.|.-++-+||.+...+... ........
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahe 645 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHE 645 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHH
Confidence 2 357899999999999887654 234556788888888885 7999999999999998765431 12344667
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHHhh----CHH-H-------------HHHhHHH----HHhHhcCCCcHHHHHHHHH
Q 007863 284 AYVRLLRDNEAEVRIAAAGKVTKICRIL----NPE-L-------------AIQHILP----CVKELSSDSSQHVRSALAT 341 (587)
Q Consensus 284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~~~-~-------------~~~~~~~----~l~~~~~d~~~~vr~~a~~ 341 (587)
.+..++.|+-++||.+|+.+|+.+.... ... . ..+..++ .+..+.+|.++-||....-
T Consensus 646 kL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v 725 (1387)
T KOG1517|consen 646 KLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVV 725 (1387)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHH
Confidence 7888899999999999999999998853 111 0 0122222 4556778999999999888
Q ss_pred HHHhhh
Q 007863 342 VIMGMA 347 (587)
Q Consensus 342 ~l~~l~ 347 (587)
++..++
T Consensus 726 ~ls~~~ 731 (1387)
T KOG1517|consen 726 ALSHFV 731 (1387)
T ss_pred HHHHHH
Confidence 888775
No 160
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.011 Score=52.81 Aligned_cols=171 Identities=13% Similarity=0.121 Sum_probs=113.3
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHH---HHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhh-
Q 007863 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL---GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM- 473 (587)
Q Consensus 398 ~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l---~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~- 473 (587)
.+......+.+.+|......+..+..++.... +...+.+ ...+.+-+++....|-.+|+.+++.+...++.....
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556788899998888888888776443 4444433 334445678888999999999999999988765321
Q ss_pred -hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH----
Q 007863 474 -QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---- 548 (587)
Q Consensus 474 -~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---- 548 (587)
+.++-.|..-....+.-+|..|-.+|..+.....+. .+++.+...+.+.++.+|..++.........++-.
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~----~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~ 243 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ----KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLL 243 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH----HHHHHHHHHHhhhchhhhhhhhccccccceeccccchhh
Confidence 222222222223345668999999999998877665 46666666678889999999998888877776522
Q ss_pred HHHHhHHHHHHHhcCCCCccHHHHH
Q 007863 549 VVEKSIRPCLVELSEDPDVDVRFFA 573 (587)
Q Consensus 549 ~~~~~i~~~l~~l~~d~~~~Vr~~a 573 (587)
++.....+.+.+-..|.=+.+|..|
T Consensus 244 ~~~~dl~~a~~~~~~d~Lp~~~~~a 268 (334)
T KOG2933|consen 244 QGSCDLSRAAQEQGSDKLPELREAA 268 (334)
T ss_pred HhHHHHHHHHHhhhcccccccccch
Confidence 2233444555554555555554333
No 161
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.29 E-value=0.036 Score=58.31 Aligned_cols=211 Identities=16% Similarity=0.141 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhccc-ChhhhhhchHHHHHHhcC---
Q 007863 176 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL-EPQDCVAHILPVIVNFSQ--- 251 (587)
Q Consensus 176 ~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-~~~~~~~~l~~~l~~~~~--- 251 (587)
....|.....+|..... ......+.. ++....-. -..+...+..+.... .+ ...++..+..++.
T Consensus 377 ~~~~r~~~lDal~~aGT----~~av~~i~~----~I~~~~~~-~~ea~~~l~~l~~~~~~P---t~e~l~~l~~L~~~~~ 444 (618)
T PF01347_consen 377 KEQARKIFLDALPQAGT----NPAVKFIKD----LIKSKKLT-DDEAAQLLASLPFHVRRP---TEELLKELFELAKSPK 444 (618)
T ss_dssp -HHHHHHHHHHHHHH-S----HHHHHHHHH----HHHTT-S--HHHHHHHHHHHHHT--------HHHHHHHHHHHT-HH
T ss_pred HHHHHHHHHHHHHHcCC----HHHHHHHHH----HHHcCCCC-HHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHhCcc
Confidence 45667666666665433 222233333 33332111 112444555554444 22 2234444444443
Q ss_pred -CCchHHHHHHHHHHHHHHHHhCCC------------CcccchHHHHHHhc----CCChHHHHHHHHHhHHHHHHhhCHH
Q 007863 252 -DKSWRVRYMVANQLYELCEAVGPE------------PTRSDVVPAYVRLL----RDNEAEVRIAAAGKVTKICRILNPE 314 (587)
Q Consensus 252 -d~~~~vR~~a~~~l~~l~~~~~~~------------~~~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~l~~~~~~~ 314 (587)
..++.+|.+|+-+++.++...... ...+.+++.+...+ +..+.+.+..++++|++++.
T Consensus 445 ~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----- 519 (618)
T PF01347_consen 445 VKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----- 519 (618)
T ss_dssp HHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------
T ss_pred ccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----
Confidence 346789999999999887644322 12233444444443 34556777888888888854
Q ss_pred HHHHhHHHHHhHhcCCC---cHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCC--CChHHHHHHHHHhHHhhhhh
Q 007863 315 LAIQHILPCVKELSSDS---SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVI 389 (587)
Q Consensus 315 ~~~~~~~~~l~~~~~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~i~~~~ 389 (587)
+..++.+..++.+. +..+|.+|+.++..+....+ +.+.+.+..++.| .+.++|.+|...|-.--+.
T Consensus 520 ---~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~-----~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~- 590 (618)
T PF01347_consen 520 ---PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP-----EKVREILLPIFMNTTEDPEVRIAAYLILMRCNPS- 590 (618)
T ss_dssp ---GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H-----HHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT----
T ss_pred ---chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc-----HHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCC-
Confidence 34566666666555 67888888888877754432 2233444444433 3467888887766553222
Q ss_pred chhhHhhhhHHHHHHHh-cCCCcHHHHHHH
Q 007863 390 GIDLLSQSLLPAIVELA-EDRHWRVRLAII 418 (587)
Q Consensus 390 ~~~~~~~~~~~~l~~~~-~~~~~~vr~~~~ 418 (587)
..++..+...+ .+++..|+..+.
T Consensus 591 ------~~~l~~i~~~l~~E~~~QV~sfv~ 614 (618)
T PF01347_consen 591 ------PSVLQRIAQSLWNEPSNQVASFVY 614 (618)
T ss_dssp ------HHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred ------HHHHHHHHHHHhhCchHHHHHHHH
Confidence 22333333333 455566555443
No 162
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=97.24 E-value=0.051 Score=56.49 Aligned_cols=151 Identities=15% Similarity=0.038 Sum_probs=85.5
Q ss_pred CChHHHHHHHHHhHHhhhhhchh------hHhhhhHHHHHHHh----cCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHH
Q 007863 370 EFPDVRLNIISKLDQVNQVIGID------LLSQSLLPAIVELA----EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 439 (587)
Q Consensus 370 ~~~~vr~~a~~~l~~i~~~~~~~------~~~~~~~~~l~~~~----~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 439 (587)
.++.++..++-+++.+......+ ...+.++|.+.+.+ ++.+...+..++++||.++.. .....+.|
T Consensus 409 ~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~----~~i~~l~~ 484 (574)
T smart00638 409 KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP----SSIKVLEP 484 (574)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh----hHHHHHHH
Confidence 35678888888888877533211 11234555554433 345566677777777655431 11233333
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcC--CccHHHHHHHHHHHHhhcccChHHHHHhHHH
Q 007863 440 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN--PHYLYRMTILQAISLLAPVMGSEITCSQLLP 517 (587)
Q Consensus 440 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~ 517 (587)
.+. .-.+....+|.+|+.+|..+...... .+.+.+...+.+ .+.++|.+|...+...-+ .. ..+.
T Consensus 485 ~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~-----~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P---~~----~~l~ 551 (574)
T smart00638 485 YLE-GAEPLSTFIRLAAILALRNLAKRDPR-----KVQEVLLPIYLNRAEPPEVRMAAVLVLMETKP---SV----ALLQ 551 (574)
T ss_pred hcC-CCCCCCHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC---CH----HHHH
Confidence 332 12234568999999999988764432 234444444433 357899999988866532 11 2222
Q ss_pred HHH-hhcCCCCccHHHHHHHH
Q 007863 518 VVI-NASKDRVPNIKFNVAKV 537 (587)
Q Consensus 518 ~l~-~~l~d~~~~vR~~a~~~ 537 (587)
.+. ..-.+++.+|+......
T Consensus 552 ~ia~~l~~E~~~QV~sfv~S~ 572 (574)
T smart00638 552 RIAELLNKEPNLQVASFVYSH 572 (574)
T ss_pred HHHHHHhhcCcHHHHHHhHHh
Confidence 222 23446778887665543
No 163
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.21 E-value=0.43 Score=51.02 Aligned_cols=168 Identities=15% Similarity=0.166 Sum_probs=125.1
Q ss_pred hchHHHHHhHHHHHHHhcCC----CChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhc-CCCcHHHHHHHHHHHHH
Q 007863 350 LGKDATIEQLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLL 424 (587)
Q Consensus 350 ~~~~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~-~~~~~vr~~~~~~l~~l 424 (587)
.|++.....+.|.+..+++. ++|+++.+|.-+|++++..- ..+-..-+|.+...++ .+++.+|.+++-.++.+
T Consensus 911 ~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS--a~fces~l~llftimeksp~p~IRsN~VvalgDl 988 (1251)
T KOG0414|consen 911 YGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS--AEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDL 988 (1251)
T ss_pred cChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcCCCceeeecchheccch
Confidence 35566778899999998853 46999999999999987542 2334567888888776 89999999999999888
Q ss_pred HHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhc
Q 007863 425 ASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP 504 (587)
Q Consensus 425 ~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~ 504 (587)
+-.++. +.+...+.+...++|++..||+.|+..+..++..--.. .+..++.+...+.|++.++|..|=..+..+..
T Consensus 989 av~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiK--VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 989 AVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIK--VKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred hhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhH--hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 866543 23456778889999999999999999999887532111 35567788888999999999999888877765
Q ss_pred ccChHHHHHhHHHHHHhhcCCC
Q 007863 505 VMGSEITCSQLLPVVINASKDR 526 (587)
Q Consensus 505 ~~~~~~~~~~~l~~l~~~l~d~ 526 (587)
.-. ..-.++|.++.-+.|+
T Consensus 1065 k~n---~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1065 KGN---TIYNLLPDILSRLSNG 1083 (1251)
T ss_pred ccc---chhhhchHHHHhhccC
Confidence 331 2334555555555544
No 164
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.13 E-value=0.54 Score=50.69 Aligned_cols=169 Identities=14% Similarity=0.097 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHhhChhhHH--HHHHHHHHHHcCCCchHHHHHHHHHHH---HHHHHhChhhhhh--chHHHHHhhhcC
Q 007863 414 RLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLKDKVYSIRDAAANNVK---RLAEEFGPDWAMQ--HIVPQVLEMINN 486 (587)
Q Consensus 414 r~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~---~l~~~~~~~~~~~--~~~~~l~~~l~~ 486 (587)
|..+--.+..+++.+|...+. +++-..+...+.+....- ...+..+. .+....+.. +.. ..+|.+.....+
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~-d~~~~s~~vf~s~~~~m~s~-l~~~~~~l~~l~~~~~s 827 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGN-DEFLSSFEVFNSLAPLMHSF-LHPLGSLLPRLFFFVRS 827 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCC-cchhhhHHHHHHHHHhhhhh-hhhhhhhhhHHHHhccc
Confidence 666777788888888876543 333333333332210000 01111221 111112221 222 567778888888
Q ss_pred CccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHH-HHHHHHhhhc--hHHHHHhHHHHHHHhcC
Q 007863 487 PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAK-VLQSLIPIVD--QSVVEKSIRPCLVELSE 563 (587)
Q Consensus 487 ~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~-~l~~l~~~~~--~~~~~~~i~~~l~~l~~ 563 (587)
....+|.+++.+++.+......+ ....++..+..++.|.+..+|..++. .+..+..... -.++...+.+.|...++
T Consensus 828 ~~~a~r~~~ar~i~~~~k~~~~e-~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ms 906 (1549)
T KOG0392|consen 828 IHIAVRYAAARCIGTMFKSATRE-TMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMS 906 (1549)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccc
Confidence 89999999999999998754444 34455666667777766666655544 4444443322 23566677888888899
Q ss_pred CCCccHHHHHHHHHHHHHHHhh
Q 007863 564 DPDVDVRFFATQALQSKDQVMM 585 (587)
Q Consensus 564 d~~~~Vr~~a~~al~~l~~~~~ 585 (587)
|....||..|.+++..+.-+++
T Consensus 907 d~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 907 DQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred cchHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999876654
No 165
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=97.12 E-value=0.18 Score=45.06 Aligned_cols=195 Identities=14% Similarity=0.170 Sum_probs=119.0
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHH-
Q 007863 170 QLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN- 248 (587)
Q Consensus 170 ~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~- 248 (587)
.+.+..++.......+.|..++.+-. ...+.++..+..+.+.+....+..+.+.+..+...-+.. .+.+.+.+..
T Consensus 8 ~l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~--f~~L~~~L~~~ 83 (234)
T PF12530_consen 8 KLGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH--FPFLQPLLLLL 83 (234)
T ss_pred HhcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH--HHHHHHHHHHH
Confidence 36666777777777777777766431 445566667777777666666666667777766543321 1333333333
Q ss_pred --------hcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhc-CCChHHHHHHHHHhHHHHHHhhCHHHHHHh
Q 007863 249 --------FSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPELAIQH 319 (587)
Q Consensus 249 --------~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 319 (587)
.-.+..|+...+.+..+..++...+. ...++++.+...+ ++.++.++..+++++..++..---+ + ..
T Consensus 84 ~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd-~-~s 159 (234)
T PF12530_consen 84 ILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVD-F-YS 159 (234)
T ss_pred HhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcc-H-HH
Confidence 12345778888878888888887665 4567899999999 7888999999999999998532111 1 22
Q ss_pred HHHHHhH-hcCCCcHHHHHHHHHHHHhhhhhh-c---hHHHHHhHHHHHHHhcCCCCh
Q 007863 320 ILPCVKE-LSSDSSQHVRSALATVIMGMAPIL-G---KDATIEQLLPIFLSLLKDEFP 372 (587)
Q Consensus 320 ~~~~l~~-~~~d~~~~vr~~a~~~l~~l~~~~-~---~~~~~~~l~~~l~~~l~d~~~ 372 (587)
.+..+.+ +-.+..+.+-...+..+.-+...- . .+.+...++..+.++....+.
T Consensus 160 ~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 160 AWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 3333333 234445555555554443332211 1 233455667777777666553
No 166
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.4 Score=48.60 Aligned_cols=324 Identities=14% Similarity=0.200 Sum_probs=157.2
Q ss_pred ccCchhHHHHHHHHHHHHhcccChhhh-hhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhc-
Q 007863 212 QDDQDSVRLLAVEGCGALGKLLEPQDC-VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL- 289 (587)
Q Consensus 212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l- 289 (587)
+..++.+-..+.++++++.+.+.-.-+ -+..++++...++ ...+|.+|+.|+-.+...--+...+-.++..+.+.+
T Consensus 203 n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~ 280 (980)
T KOG2021|consen 203 NIVNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLE 280 (980)
T ss_pred ccCCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 333677777788888877766543222 2345666666665 567899998888776642111111112333331111
Q ss_pred ------CC--ChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHH
Q 007863 290 ------RD--NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP 361 (587)
Q Consensus 290 ------~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 361 (587)
.| .+.++-.. +..+...+|.+. .....++.+..+..++..+...+ ..++|
T Consensus 281 lfg~~s~dq~~d~df~e~----vskLitg~gvel-----~~i~s~lnseld~~~kqn~l~~l-------------l~~vp 338 (980)
T KOG2021|consen 281 LFGYHSADQMDDLDFWES----VSKLITGFGVEL-----TIIISQLNSELDTLYKQNVLSIL-------------LEIVP 338 (980)
T ss_pred HHhhhccccccCchHHHH----HHHHHhhcceee-----ehhHhhhhhccCHHHHHHHHHHH-------------HHHHH
Confidence 11 22333222 222333223221 11111111222333333222221 22456
Q ss_pred HHHHhcCCCChHHHHHHHHHhHHhhhhhch------h---hHhhhhHHHHHHHhcC------CC----------cHHHHH
Q 007863 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGI------D---LLSQSLLPAIVELAED------RH----------WRVRLA 416 (587)
Q Consensus 362 ~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~------~---~~~~~~~~~l~~~~~~------~~----------~~vr~~ 416 (587)
++.+.+.+...++-......+......+.. . .+.+.+...+.++..| .+ .++|+.
T Consensus 339 yllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~Rkk 418 (980)
T KOG2021|consen 339 YLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKK 418 (980)
T ss_pred HHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHH
Confidence 677776666555555444443333222211 0 1112222222222211 11 234554
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHH---cCCCchHHHHHHHHHHHHHHHHhChhhh------------hhchHHHHH
Q 007863 417 IIEYIPLLASQLGVGFFDDKLGALCMQW---LKDKVYSIRDAAANNVKRLAEEFGPDWA------------MQHIVPQVL 481 (587)
Q Consensus 417 ~~~~l~~l~~~~~~~~~~~~l~~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~~~~~------------~~~~~~~l~ 481 (587)
.--....+ ..+.++.+...+-..+-.. -+.++|..-+.|+..+-.+.+.+..+.+ ....++.+.
T Consensus 419 Lk~fqdti-~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~ 497 (980)
T KOG2021|consen 419 LKNFQDTI-VVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLM 497 (980)
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHH
Confidence 33333322 2345555544444333333 3567888889999888887776544321 112233332
Q ss_pred h--hhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhh------cCCCCccHHHHHHHHHHHHHhhhchH--HHH
Q 007863 482 E--MINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINA------SKDRVPNIKFNVAKVLQSLIPIVDQS--VVE 551 (587)
Q Consensus 482 ~--~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~------l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~ 551 (587)
. ...+++..+....++.+......+..+ ..-+|.++.. +.+.+..||..+.....+.++.+.+. ++.
T Consensus 498 tsqv~~h~h~lVqLlfmE~ivRY~kff~~e---sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfi 574 (980)
T KOG2021|consen 498 TSQVLAHDHELVQLLFMELIVRYNKFFSTE---SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFI 574 (980)
T ss_pred HcccccCCchHHHHHHHHHHHHHHHHHhcc---hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 2 234455666666666665544433322 3345555544 44568999999999999998877653 455
Q ss_pred HhHHHHHHHhcC
Q 007863 552 KSIRPCLVELSE 563 (587)
Q Consensus 552 ~~i~~~l~~l~~ 563 (587)
+.++..+..+++
T Consensus 575 e~iln~iqdlL~ 586 (980)
T KOG2021|consen 575 EEILNKIQDLLH 586 (980)
T ss_pred HHHHHHHHHHHc
Confidence 666666666553
No 167
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.06 E-value=0.32 Score=46.70 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=85.2
Q ss_pred CcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcC------CCchHHHHHHHHHHHHHHHHhC---------------
Q 007863 410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK------DKVYSIRDAAANNVKRLAEEFG--------------- 468 (587)
Q Consensus 410 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~l~~~~~--------------- 468 (587)
....|.+|...+..+++..+... .+.+...+...+. ..+|.-+.+|+..++.++....
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v 302 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV 302 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred cCCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence 34567888888888887665432 1222233333332 4678889999999998876431
Q ss_pred hhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHH
Q 007863 469 PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL 538 (587)
Q Consensus 469 ~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l 538 (587)
.+++...++|.+. --.+..+-+|..|++.+..+-..++++ ....++|.+..++.+++..|+.-|+.++
T Consensus 303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-QLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1235567777776 223456779999999999998888765 5677999999999999999998888764
No 168
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.04 E-value=1.1 Score=52.86 Aligned_cols=514 Identities=16% Similarity=0.160 Sum_probs=236.9
Q ss_pred CCchHHHHHHHHHhcccccCcCC--------cchHhhhhhHHHhh-hcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHH
Q 007863 58 DDDDEVLLAMAEELGVFIPYVGG--------LEYANVLLPPLETL-CTVEETCVRDKAVESLCRIGSQMREQDVVEHFIP 128 (587)
Q Consensus 58 ~~~~~v~~~~~~~l~~~~~~~~~--------~~~~~~l~~~l~~l-~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~ 128 (587)
.+++++|..++..+..+..+... .++....+..+..+ ..++++.+|.+....+. +...+....+..+.
T Consensus 492 ~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~laQ~~~lr 568 (2341)
T KOG0891|consen 492 ADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLAQPDLLR 568 (2341)
T ss_pred cccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhcCchhHH
Confidence 45778888877666554433221 11133333443333 35778887777666555 22212222222333
Q ss_pred HHHHhhcCCCCcchhhHHhhhhhhccCCCHHH----HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh--hhhHHH
Q 007863 129 LVKRLAAGEWFTARVSSCGLFHVAYPSAPEAL----KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHLKSE 202 (587)
Q Consensus 129 ~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~----~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ 202 (587)
.......+..+..+..+...++.++...+... +...+.....+-.+....+....++-+..+...... ..+...
T Consensus 569 ~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~ 648 (2341)
T KOG0891|consen 569 LLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGP 648 (2341)
T ss_pred HHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCc
Confidence 33334455567777777777776655443322 333333333333333333333333333333322211 223333
Q ss_pred HHHHHHHhcccCchhHHHHHHHHHHHHhcccCh--hhhhhchHHHHHHhcCCC-chHHHHHHHHHHHHHHHHhCC----C
Q 007863 203 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGP----E 275 (587)
Q Consensus 203 i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~----~ 275 (587)
++..+...+.+.+..+-..+..+++.++...+. ....+.+++.+.+.+.|. +..-|.++...++++...-+- -
T Consensus 649 ~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~ 728 (2341)
T KOG0891|consen 649 ILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPY 728 (2341)
T ss_pred hHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEeccc
Confidence 444444556677777888888888888877763 223346677777766664 556677778899888765442 1
Q ss_pred CcccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHHHHHHhHHH--HHhHhcCCCcHHH-HHHHHHHHHhhhhhhc
Q 007863 276 PTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPELAIQHILP--CVKELSSDSSQHV-RSALATVIMGMAPILG 351 (587)
Q Consensus 276 ~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~--~l~~~~~d~~~~v-r~~a~~~l~~l~~~~~ 351 (587)
...+.++..+...++. ....+|.++++.++..+..- +... ..... .+.......++.. +..+ ..+...+
T Consensus 729 ~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d-~~~~-~~~~~~~~~~~~~~~~k~~~~~~~~-----~~~~~~~ 801 (2341)
T KOG0891|consen 729 LDYPELLDILINILKTEQSSTIRREAIRLLGLLGALD-PYKH-KVTEGTSASKISSEQIKSDIDISLL-----ESGVNPS 801 (2341)
T ss_pred ccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccc-hhHH-HHHhhhhhHhhhhccccccchHHHH-----Hhhhhhh
Confidence 2233455555554443 34678888888888554421 1110 00001 1111111111111 0000 0000000
Q ss_pred hHHHHH-hHHHHHHHhcCCCChHHHH-HHHHHhHHhhhhhch--hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 007863 352 KDATIE-QLLPIFLSLLKDEFPDVRL-NIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (587)
Q Consensus 352 ~~~~~~-~l~~~l~~~l~d~~~~vr~-~a~~~l~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 427 (587)
..++.+ .-+-.+...++|+...... ..+.+...+....|. ..+.+.++|.+........|..+......+....-.
T Consensus 802 ~~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~~~~ 881 (2341)
T KOG0891|consen 802 NDEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSCPPNLREFYFQQLTSLVAI 881 (2341)
T ss_pred hhhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhcCcchhHHHHHhhhhhhhc
Confidence 011110 0111333444444221111 112222222222222 233455666666555554555555443333322221
Q ss_pred hChhhHHHHHHHHHHHHcCC---CchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCccHHHHHHHHHHHHh
Q 007863 428 LGVGFFDDKLGALCMQWLKD---KVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRMTILQAISLL 502 (587)
Q Consensus 428 ~~~~~~~~~l~~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l 502 (587)
.... . ..+++.+.....+ .+..+.......+..+...++.++ +....++.........+...|.........+
T Consensus 882 ~~~h-~-~~~~~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~~l~~~~~~~s~~~~~~~~~~~~~ 959 (2341)
T KOG0891|consen 882 VRQH-I-RPYMESIFTLIKDFWPPDTSLQITIISLIEDIAVALGGEFKKYLPELLPTMLTVLQHDKSKDRVVSRKVLQSL 959 (2341)
T ss_pred cchh-H-hhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccchheeecccccchHHHHHHhhHHH
Confidence 1111 0 1122222222222 222333333444444444555443 1122333322222111122232222222222
Q ss_pred hc-ccChHHHHHhHHHHHHhhcCCC--CccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 007863 503 AP-VMGSEITCSQLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 579 (587)
Q Consensus 503 ~~-~~~~~~~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~ 579 (587)
-. .-+.+.+..-+.|.+++++.+. ...+|..+..+++.+........+...+...+...+.-. ++.+......+..
T Consensus 960 ~~~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~~~~~~~~s~i~~~~~r~l~~s-~el~~~~~~~l~~ 1038 (2341)
T KOG0891|consen 960 QKFGSNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQVDLSEYASRIIHPLVRVLSSS-PELRDVIMDTLIA 1038 (2341)
T ss_pred HhcCccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHH
Confidence 21 1122334556777888888776 677888888888888877766666666655555544444 6777766666655
Q ss_pred HHHHh
Q 007863 580 KDQVM 584 (587)
Q Consensus 580 l~~~~ 584 (587)
+..-+
T Consensus 1039 l~~~~ 1043 (2341)
T KOG0891|consen 1039 LVKQL 1043 (2341)
T ss_pred HHHhh
Confidence 55443
No 169
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.01 E-value=0.38 Score=46.74 Aligned_cols=194 Identities=13% Similarity=0.120 Sum_probs=99.7
Q ss_pred HHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007863 106 AVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAAT 185 (587)
Q Consensus 106 a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~ 185 (587)
.+..+..+....+.+++.++++-++.++..++...+ ..+..... .++.. +.+++. ++..++..+...++.
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~-----~~f~~~~~-~~~~~---~~~fl~-lL~~~d~~i~~~a~~ 123 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRV-----KLFHDDAL-LKKKT---WEPFFN-LLNRQDQFIVHMSFS 123 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHH-----HHHHHHhh-ccccc---hHHHHH-HHcCCchhHHHHHHH
Confidence 344455555556666666677666666665532111 11111111 11111 223332 455677888999999
Q ss_pred HHHHHHHHHhh---hhhHHHHHHHHHHhcccC-chhHHHHHHHHHHHHhcccCh-h-hhhhchHHHHHHhcCCC--chHH
Q 007863 186 NLGKFAATVEA---AHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEP-Q-DCVAHILPVIVNFSQDK--SWRV 257 (587)
Q Consensus 186 ~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~-~-~~~~~l~~~l~~~~~d~--~~~v 257 (587)
.+..++..-.. ....+.+.+.+...+... +...+..++.++..+...-.- . ......++.+...++.. +...
T Consensus 124 iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql 203 (429)
T cd00256 124 ILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQL 203 (429)
T ss_pred HHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHH
Confidence 98888754221 122333445555555433 355566777888776654221 1 11223455555555432 4466
Q ss_pred HHHHHHHHHHHHHHhC--CCCcccchHHHHHHhcCCCh-HHHHHHHHHhHHHHHH
Q 007863 258 RYMVANQLYELCEAVG--PEPTRSDVVPAYVRLLRDNE-AEVRIAAAGKVTKICR 309 (587)
Q Consensus 258 R~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~ 309 (587)
...++-++.-+...-. .......+++.+...+++.. ..|-+-++.+|.++..
T Consensus 204 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 204 QYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 6666666655432111 11123468888888887653 3344555555666555
No 170
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.99 E-value=0.013 Score=49.21 Aligned_cols=67 Identities=18% Similarity=0.137 Sum_probs=49.0
Q ss_pred HHHhhcCC-CCccHHHHHHHHHHHHHhhhchH----HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHh
Q 007863 518 VVINASKD-RVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 584 (587)
Q Consensus 518 ~l~~~l~d-~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~ 584 (587)
.+...+.. .+..+-...++++..++...+.+ .+...++..+..+..+.|++||..+.-+++.+.+..
T Consensus 105 ~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 105 GLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 33333443 46777778899999988776654 445566666777788899999999999999887653
No 171
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.063 Score=48.16 Aligned_cols=165 Identities=16% Similarity=0.157 Sum_probs=78.5
Q ss_pred HhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHH
Q 007863 287 RLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFL 364 (587)
Q Consensus 287 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 364 (587)
..+.+.+|+....++..+..++..-... .....++..+.+-+++....|-.+|+.+++.+....+.... +.+-..+.
T Consensus 95 ~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~-~~ld~lv~ 173 (334)
T KOG2933|consen 95 KKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID-QELDDLVT 173 (334)
T ss_pred HHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3345556666666665555555433221 11233444444555555556666666666666554443221 12222222
Q ss_pred Hhc---CCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh----hHHHHH
Q 007863 365 SLL---KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----FFDDKL 437 (587)
Q Consensus 365 ~~l---~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l 437 (587)
.++ .+.+..||..+-.+|..+.....+. .+++.+.....+.++++|..+...+......+|.. ++...+
T Consensus 174 ~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~----~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl 249 (334)
T KOG2933|consen 174 QLLHKASQDNRFVREDAEKALVAMVNHVTPQ----KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDL 249 (334)
T ss_pred HHHhhhcccchHHHHHHHHHHHHHHhccChH----HHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHH
Confidence 222 2334556666666666666555543 33444444455666666666655554444433311 112233
Q ss_pred HHHHHHHcCCCchHHHHHH
Q 007863 438 GALCMQWLKDKVYSIRDAA 456 (587)
Q Consensus 438 ~~~l~~~l~d~~~~vr~~a 456 (587)
.+.+-+-..|.-+.+|++|
T Consensus 250 ~~a~~~~~~d~Lp~~~~~a 268 (334)
T KOG2933|consen 250 SRAAQEQGSDKLPELREAA 268 (334)
T ss_pred HHHHHhhhcccccccccch
Confidence 3444444455555555443
No 172
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.94 E-value=0.52 Score=47.25 Aligned_cols=255 Identities=11% Similarity=0.089 Sum_probs=121.1
Q ss_pred HhHHHHHhHhcCCC-cHHHHHHHHHHHHhhhhhhc-hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHh
Q 007863 318 QHILPCVKELSSDS-SQHVRSALATVIMGMAPILG-KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS 395 (587)
Q Consensus 318 ~~~~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~ 395 (587)
..++..+..++... +...-..++..+..+..+.. +......++..+....+-. .....+.+.+..+++.-. .
T Consensus 175 ~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~----g 248 (464)
T PF11864_consen 175 SSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHL----G 248 (464)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCcc----H
Confidence 44455555444322 22222455555555543221 2233344555555543332 566667777777764321 1
Q ss_pred hhhHHHHHHHh--cC----CCcHHHHHHHHHHHHHHHhhChhhH------HHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 007863 396 QSLLPAIVELA--ED----RHWRVRLAIIEYIPLLASQLGVGFF------DDKLGALCMQWLKDKVYSIRDAAANNVKRL 463 (587)
Q Consensus 396 ~~~~~~l~~~~--~~----~~~~vr~~~~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 463 (587)
...+..+...+ .+ ++..+-..|+..++.+.-..+.+.+ ...++|.+...++..+..|-...+..+..+
T Consensus 249 ~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~l 328 (464)
T PF11864_consen 249 HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRL 328 (464)
T ss_pred HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHH
Confidence 34556666666 22 3455556777777776654422211 134888888888877777766777777777
Q ss_pred H-HHhChhhh------hhchHHHHHhhhcC-Cc--------cHHHHHHHH---HHHHhhcccChHHHHHhHHHHHHhhcC
Q 007863 464 A-EEFGPDWA------MQHIVPQVLEMINN-PH--------YLYRMTILQ---AISLLAPVMGSEITCSQLLPVVINASK 524 (587)
Q Consensus 464 ~-~~~~~~~~------~~~~~~~l~~~l~~-~~--------~~~r~~a~~---~l~~l~~~~~~~~~~~~~l~~l~~~l~ 524 (587)
. ..++.... .-.+++.+...... +. ..++..... .+..+.+.....--.+.++..+.+...
T Consensus 329 l~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~~g~~~~~~~f~~~~~~ 408 (464)
T PF11864_consen 329 LDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDFNGPKDKLFNFFERVHS 408 (464)
T ss_pred HhHhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCCcCccHHHHHHHHHHHhc
Confidence 6 55544310 01122222222111 11 112221111 122222211100013455555555554
Q ss_pred CCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhc-CCCCccHHHHHHHHHHH
Q 007863 525 DRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELS-EDPDVDVRFFATQALQS 579 (587)
Q Consensus 525 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~-~d~~~~Vr~~a~~al~~ 579 (587)
...+......+..=...+.. ..+.....+...+..+. .+..++||..|.+++..
T Consensus 409 ~lp~s~~~~vl~~~~~~~~P-s~~~W~~n~~~ll~~F~~~~~~~~vRi~aL~~l~e 463 (464)
T PF11864_consen 409 YLPDSSALLVLFYEERSCSP-SNPDWLDNLQKLLDRFYNRDRRSEVRIKALDVLEE 463 (464)
T ss_pred cCCHHHHHHHHHHHhcccCC-CChHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhh
Confidence 44443333333111111111 11234444555555544 77888999999888764
No 173
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.90 E-value=0.4 Score=51.26 Aligned_cols=128 Identities=13% Similarity=0.084 Sum_probs=95.4
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcc---c-ChHHHHHhHHHHHH
Q 007863 445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV---M-GSEITCSQLLPVVI 520 (587)
Q Consensus 445 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~---~-~~~~~~~~~l~~l~ 520 (587)
.+|-.+.+|...+..||.++..+..-++.+..+..+--.+.|.+..||..++.+|..+... . +.+.|.+++-..++
T Consensus 296 YRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIV 375 (1048)
T KOG2011|consen 296 YRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIV 375 (1048)
T ss_pred cccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 4788999999999999999999888887888888888889999999999999999998875 2 22446667777777
Q ss_pred hhc-CCCCccHHHHHHHHHHHHHh--hhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHH
Q 007863 521 NAS-KDRVPNIKFNVAKVLQSLIP--IVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577 (587)
Q Consensus 521 ~~l-~d~~~~vR~~a~~~l~~l~~--~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al 577 (587)
.+. .|.+..||...+..+..... .+.. .-+-.+..+.-|.++.|+..|..-+
T Consensus 376 eMadrd~~~~Vrav~L~~~~~~~~~g~L~d-----~di~~Vy~Li~d~~r~~~~aa~~fl 430 (1048)
T KOG2011|consen 376 EMADRDRNVSVRAVGLVLCLLLSSSGLLSD-----KDILIVYSLIYDSNRRVAVAAGEFL 430 (1048)
T ss_pred HHHhhhcchhHHHHHHHHHHHHhcccccCh-----hHHHHHHHHHhccCcchHHHHHHHH
Confidence 776 56677888777776655532 2222 2233446677788888887776554
No 174
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.83 E-value=0.5 Score=46.36 Aligned_cols=254 Identities=11% Similarity=0.074 Sum_probs=138.9
Q ss_pred cCCCcHHHHHHHHHHHHhhhhhhchHH----HHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh--hHhhhhHHH
Q 007863 328 SSDSSQHVRSALATVIMGMAPILGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPA 401 (587)
Q Consensus 328 ~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~ 401 (587)
..+++|.--..+.+.+..+......+. +...++-.+..++..+++.-|......+..+....... .+...+...
T Consensus 99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~ 178 (409)
T PF01603_consen 99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI 178 (409)
T ss_dssp ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 345667666666666666655544322 34456667788888888888888888888877654321 223334444
Q ss_pred HHHHhc-CCCcHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHHhChhhhhhch
Q 007863 402 IVELAE-DRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEFGPDWAMQHI 476 (587)
Q Consensus 402 l~~~~~-~~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~ 476 (587)
+.+.+. .....--..+++.++.+.+.+. .+.....+...++.+.+.+.. .....-..++..++..-. . ....+
T Consensus 179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp-~-l~~~~ 256 (409)
T PF01603_consen 179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP-S-LAEPV 256 (409)
T ss_dssp HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G-G-GHHHH
T ss_pred HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc-h-hHHHH
Confidence 444444 2334444567777777776554 222233444555555554433 234555555555554311 1 23444
Q ss_pred HHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH---HHhHHHHHHhhcCCCCccHHHHHHHHHHHH--Hhhhch--HH
Q 007863 477 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT---CSQLLPVVINASKDRVPNIKFNVAKVLQSL--IPIVDQ--SV 549 (587)
Q Consensus 477 ~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~---~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l--~~~~~~--~~ 549 (587)
+..+.+.---.+.......+.-+..+...++++.+ ...+...+..++++++..|-..|+..+..= ...+.. ..
T Consensus 257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~ 336 (409)
T PF01603_consen 257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRV 336 (409)
T ss_dssp HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHH
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHH
Confidence 55555443334566667788888888887776654 445666777788888888888887765322 222211 12
Q ss_pred HHHhHHHHHHHhcC-CCCccHHHHHHHHHHHHHHH
Q 007863 550 VEKSIRPCLVELSE-DPDVDVRFFATQALQSKDQV 583 (587)
Q Consensus 550 ~~~~i~~~l~~l~~-d~~~~Vr~~a~~al~~l~~~ 583 (587)
+...+.|.|.+... -=+..||..|..++..+.++
T Consensus 337 i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 337 ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 22334444443222 22557999999998887764
No 175
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.79 E-value=0.084 Score=56.37 Aligned_cols=223 Identities=18% Similarity=0.157 Sum_probs=131.0
Q ss_pred hHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHH------------hcCCC-hHHHHHHHHHhHHHHH
Q 007863 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVR------------LLRDN-EAEVRIAAAGKVTKIC 308 (587)
Q Consensus 242 l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~------------~l~d~-~~~vr~~a~~~l~~l~ 308 (587)
++..+...+-+++|.+|..++.++..+...-+.+.....+-..+.. +..|+ -.-||++++++|+.+.
T Consensus 78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l 157 (1549)
T KOG0392|consen 78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYL 157 (1549)
T ss_pred HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH
Confidence 4444455555778888888888777777665544332221111111 12222 3579999999999999
Q ss_pred HhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc--hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhh
Q 007863 309 RILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (587)
Q Consensus 309 ~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~ 386 (587)
++.....+ ...+..+.+++.-++|.+|..-+..+........ -......+++.+...+.|.+.+||..++..+..+.
T Consensus 158 ~~~~~s~~-~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~ 236 (1549)
T KOG0392|consen 158 KHMDESLI-KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAP 236 (1549)
T ss_pred HhhhhHhh-HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhh
Confidence 98776543 6677788888888899999887666554433111 11344567788889999999999999998887776
Q ss_pred hhhchhhH---hhhhHHHHHHHh---cCCCcH---HHHHHHHHHHHH--HHhhChhhHHHHHHHHHHHHcCCCchHHHHH
Q 007863 387 QVIGIDLL---SQSLLPAIVELA---EDRHWR---VRLAIIEYIPLL--ASQLGVGFFDDKLGALCMQWLKDKVYSIRDA 455 (587)
Q Consensus 387 ~~~~~~~~---~~~~~~~l~~~~---~~~~~~---vr~~~~~~l~~l--~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~ 455 (587)
... .+.. ...++..+...+ .|-.|. .+....+.+... ............++|-+..++...-..+|.+
T Consensus 237 s~~-v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a 315 (1549)
T KOG0392|consen 237 SIQ-VKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRA 315 (1549)
T ss_pred HHH-HhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHH
Confidence 554 1111 112222222221 222222 222211111111 0000011112345666667777778889999
Q ss_pred HHHHHHHHHHH
Q 007863 456 AANNVKRLAEE 466 (587)
Q Consensus 456 a~~~l~~l~~~ 466 (587)
++..+..+.+.
T Consensus 316 ~l~~l~~lle~ 326 (1549)
T KOG0392|consen 316 ALETLAMLLEA 326 (1549)
T ss_pred HHHHHHHHHhc
Confidence 99988888764
No 176
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=96.65 E-value=0.46 Score=42.54 Aligned_cols=133 Identities=14% Similarity=0.086 Sum_probs=83.4
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhH--
Q 007863 249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKE-- 326 (587)
Q Consensus 249 ~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~-- 326 (587)
..+..+++......+.|+.++..-. .....++..+..+.+.+..+.+..+.+.+..+.+.-+.- + +.+-+.+..
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~-f-~~L~~~L~~~~ 84 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH-F-PFLQPLLLLLI 84 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH-H-HHHHHHHHHHH
Confidence 5556677777777777777765421 223345666666666666666666666666665542221 1 122222221
Q ss_pred -------hcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhc-CCCChHHHHHHHHHhHHhhh
Q 007863 327 -------LSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQ 387 (587)
Q Consensus 327 -------~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~i~~ 387 (587)
.-.+..|....+.+.++..++...+. ....+++.+..++ ++.++.++..++.++..+++
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 11244577777777777777766554 4456778888888 78888888888889888884
No 177
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.60 E-value=0.075 Score=44.77 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=32.7
Q ss_pred CChHHHHHHHHHhHHhhhhhc----hhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 007863 370 EFPDVRLNIISKLDQVNQVIG----IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (587)
Q Consensus 370 ~~~~vr~~a~~~l~~i~~~~~----~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 427 (587)
.+..+-...++++..++.... +..+...++..+..++.+.+..+|..++.+++.+...
T Consensus 114 ~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 114 KSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred cccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 345555555555555554332 2334455666666666666666666666666666543
No 178
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.59 E-value=0.016 Score=48.05 Aligned_cols=140 Identities=16% Similarity=0.153 Sum_probs=71.1
Q ss_pred hhchHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcC-----CChHHHHHHHHHhHHHHHHh-h
Q 007863 239 VAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLR-----DNEAEVRIAAAGKVTKICRI-L 311 (587)
Q Consensus 239 ~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~-~ 311 (587)
.+.+++.+..+++. .+|.+|+.+++++|.++..-+ ........... +.+........ ...... .
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP------~~~k~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~ 78 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDP------YKHKSIQKSLDSKSSENSNDESTDISL---PMMGISPS 78 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCc------HHHhcccccCCccccccccccchhhHH---hhccCCCc
Confidence 56677777777654 478999999999987764211 00000000000 00111111111 000000 1
Q ss_pred CHHHHHHhHHHHHhHhcCCCcH-HHHHHHHHHHHhhhhhhch--HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhh
Q 007863 312 NPELAIQHILPCVKELSSDSSQ-HVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (587)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~ 387 (587)
..+.+...++..+.+.++|++- .-+.+++.++..+.+..|. -.+.++++|.+...++..++..|......|+.+..
T Consensus 79 ~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 79 SEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 1233334455666666666652 3334555666555544442 33566777777777776666666666666665543
No 179
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.4 Score=44.35 Aligned_cols=174 Identities=13% Similarity=0.020 Sum_probs=110.6
Q ss_pred CCcHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh---hhhchHHHHHhh
Q 007863 409 RHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEM 483 (587)
Q Consensus 409 ~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~~ 483 (587)
.+.+-+..++..+..++..+....- .-..++.++..+++.+..+|..|+..++..++...... +....++.+...
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 3556677777777777776643221 11223444459999999999999999999998654421 234466677666
Q ss_pred hc-CCccHHHHHHHHHHHHhhcccChHH--H-HHhHHHHHHhhcCC--CCccHHHHHHHHHHHHHhhhch--HHHHHhHH
Q 007863 484 IN-NPHYLYRMTILQAISLLAPVMGSEI--T-CSQLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQ--SVVEKSIR 555 (587)
Q Consensus 484 l~-~~~~~~r~~a~~~l~~l~~~~~~~~--~-~~~~l~~l~~~l~d--~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~ 555 (587)
+. +.+..+|..|+.+++.+..+..+.. | .-.=...+.+.+++ .+...+..++..++.+...-.. +.+....+
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 54 4556789999999999998665431 2 11224456666666 4666778888888888765332 23333333
Q ss_pred HHHH-HhcCCCCccHHHHHHHHHHHHHH
Q 007863 556 PCLV-ELSEDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 556 ~~l~-~l~~d~~~~Vr~~a~~al~~l~~ 582 (587)
+... .+..--+.+++..+..++-++..
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 3333 35555677777777776655443
No 180
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.56 E-value=1 Score=45.41 Aligned_cols=105 Identities=12% Similarity=0.050 Sum_probs=86.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhh--------hHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh-h
Q 007863 166 TIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH--------LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-Q 236 (587)
Q Consensus 166 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~--------~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~ 236 (587)
..+..++.+.+...|-+..+.+++++....... ....++..+.+-+.|.+|-+|..|+..+.++.+.-.. .
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~ 381 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV 381 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc
Confidence 456678888999999999999999988765422 3345677888889999999999999999999876554 3
Q ss_pred hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 007863 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (587)
Q Consensus 237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~ 270 (587)
.....+.......++|.+..||+.|++.+..+..
T Consensus 382 ~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 382 GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 3456788889999999999999999999988754
No 181
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.56 E-value=0.083 Score=44.10 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh---hhhchHHHHHhhhcCCccHHHHHHHHHHHHh---hcccC
Q 007863 434 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEMINNPHYLYRMTILQAISLL---APVMG 507 (587)
Q Consensus 434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l---~~~~~ 507 (587)
...++|++...+.+....-|--|.+.+..+...-+.+. +..++++.+.+.++.++..+..+++.++..+ ...+|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 46789999999999999999999999999998833332 3466777778889999999999999999999 66777
Q ss_pred hH--HHHHhHHHHHHhhcCC-----------CCccHHHHHHHHHHHHHhhhchH
Q 007863 508 SE--ITCSQLLPVVINASKD-----------RVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 508 ~~--~~~~~~l~~l~~~l~d-----------~~~~vR~~a~~~l~~l~~~~~~~ 548 (587)
+. .+..+++|.+.-+.+. ...+++...-.+|..+-..-|++
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 65 4678888877733221 24566777777777666665554
No 182
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=96.52 E-value=0.7 Score=46.52 Aligned_cols=149 Identities=16% Similarity=0.083 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhhHHH--------HHHHHHHhcc--cCchhHHHHHHHHH
Q 007863 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSE--------IMSIFEELTQ--DDQDSVRLLAVEGC 226 (587)
Q Consensus 160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~--------i~~~l~~l~~--d~~~~vr~~a~~~l 226 (587)
+.+.+++++..-.++.+..+|-.++..+.++.+.++- +.+.+. .+..+.+-++ +.++.+...++..+
T Consensus 243 ~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~ 322 (993)
T COG5234 243 YLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFF 322 (993)
T ss_pred HHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHH
Confidence 6677778888888888999999999999999988764 222221 1111222111 12344555555444
Q ss_pred HHHhcccChhhhhhchHHHHHHhcCCC--------chHHHHHHHHHHHHHHHHhCCCCcc---cchHHHHHH-hcCCChH
Q 007863 227 GALGKLLEPQDCVAHILPVIVNFSQDK--------SWRVRYMVANQLYELCEAVGPEPTR---SDVVPAYVR-LLRDNEA 294 (587)
Q Consensus 227 ~~l~~~~~~~~~~~~l~~~l~~~~~d~--------~~~vR~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~-~l~d~~~ 294 (587)
+ +++..+-+...-.+.|.+.+.++-+ -..+|.+++-.+..+.....+.... ..+...+.+ .+-|++-
T Consensus 323 a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel 401 (993)
T COG5234 323 A-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPEL 401 (993)
T ss_pred H-HhhccccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchh
Confidence 4 4443322211112455555544422 2357777776666555442222211 124444444 6789999
Q ss_pred HHHHHHHHhHHHHHH
Q 007863 295 EVRIAAAGKVTKICR 309 (587)
Q Consensus 295 ~vr~~a~~~l~~l~~ 309 (587)
.+|.+|..++-++..
T Consensus 402 ~vRr~a~Aal~E~iG 416 (993)
T COG5234 402 NVRRAATAALFEVIG 416 (993)
T ss_pred hhhhHHHHHHHHHhc
Confidence 999999888766544
No 183
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.51 E-value=0.94 Score=44.46 Aligned_cols=251 Identities=10% Similarity=0.102 Sum_probs=132.0
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH-H-HHHHhHHHH
Q 007863 250 SQDKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-E-LAIQHILPC 323 (587)
Q Consensus 250 ~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~-~~~~~~~~~ 323 (587)
..+++|.--..+.+.|..+........ ....++..+..+++.+|++-|......+-.+...+.. . .....+...
T Consensus 99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~ 178 (409)
T PF01603_consen 99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI 178 (409)
T ss_dssp ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 346778777777777777776544332 3446778888889999999999888888886654432 1 222333444
Q ss_pred HhHhcCC-CcHHHHHHHHHHHHhhhhhhc---hHHHHHhHHHHHHHhcCCCC-hHHHHHHHHHhHHhhhhhchhhHhhhh
Q 007863 324 VKELSSD-SSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLLSQSL 398 (587)
Q Consensus 324 l~~~~~d-~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~i~~~~~~~~~~~~~ 398 (587)
+.+...+ ....--..+++.++.+...+. ++.....+...+..+.+... ..-......++..+++.- ..+...+
T Consensus 179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd--p~l~~~~ 256 (409)
T PF01603_consen 179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD--PSLAEPV 256 (409)
T ss_dssp HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH---GGGHHHH
T ss_pred HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC--chhHHHH
Confidence 4444432 233334455667777766554 34444445555666665553 222444444554444321 1112234
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHH---HHHHHHHHHcCCCchHHHHHHHHHHHH--HHHHhChhhhh
Q 007863 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLKDKVYSIRDAAANNVKR--LAEEFGPDWAM 473 (587)
Q Consensus 399 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~--l~~~~~~~~~~ 473 (587)
+..+.+..--.+..-....+..+..+...++++.+.. .+...+-.++.++...|-+.|+..+.. +...+.. ..
T Consensus 257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~--~~ 334 (409)
T PF01603_consen 257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQ--NS 334 (409)
T ss_dssp HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHC--TH
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHh--Ch
Confidence 4444444444555556667777777777777666543 344445566788888888888766532 1222111 12
Q ss_pred hchHHHHHhhhcC---C--ccHHHHHHHHHHHHhhc
Q 007863 474 QHIVPQVLEMINN---P--HYLYRMTILQAISLLAP 504 (587)
Q Consensus 474 ~~~~~~l~~~l~~---~--~~~~r~~a~~~l~~l~~ 504 (587)
..++|.+...+.. . +..+|..+..++..+.+
T Consensus 335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3344444443211 1 34566666666665554
No 184
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=1.2 Score=45.65 Aligned_cols=175 Identities=12% Similarity=0.168 Sum_probs=112.4
Q ss_pred cHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhC--hhhhh---hchHHHHHhhh
Q 007863 411 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFG--PDWAM---QHIVPQVLEMI 484 (587)
Q Consensus 411 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~--~~~~~---~~~~~~l~~~l 484 (587)
.-+|..++..++.....--+....+.+-..+.++++|. +..||-+++.++..++..+. .+.|. +.+.-.+++++
T Consensus 501 RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll 580 (978)
T KOG1993|consen 501 RIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLL 580 (978)
T ss_pred hHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHH
Confidence 34677888888888775445555667777888999998 77899999999999987543 22222 22222333333
Q ss_pred cC-CccHHHHHHHHHHHHhhcccChH--HHH---HhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--HHHHhHHH
Q 007863 485 NN-PHYLYRMTILQAISLLAPVMGSE--ITC---SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRP 556 (587)
Q Consensus 485 ~~-~~~~~r~~a~~~l~~l~~~~~~~--~~~---~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~ 556 (587)
.. .....|...+..++.+....+.. ++. -.++|.+-+-.+ ..+-.|.+.+.++.+++..++.. .+..-+.|
T Consensus 581 ~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~p 659 (978)
T KOG1993|consen 581 KAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQSFEFYPFLYP 659 (978)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccCCccchHHHHH
Confidence 22 34557888888888877655442 222 234444444333 57889999999999999988764 44455666
Q ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863 557 CLVELSEDPDVDVRFFATQALQSKDQVMMS 586 (587)
Q Consensus 557 ~l~~l~~d~~~~Vr~~a~~al~~l~~~~~~ 586 (587)
++....+-..|+-......++.-..-.+++
T Consensus 660 VIel~~D~~sP~hv~L~EDgmeLW~~~L~n 689 (978)
T KOG1993|consen 660 VIELSTDPSSPEHVYLLEDGMELWLTTLMN 689 (978)
T ss_pred HHHHhcCCCCCceeehhhhHHHHHHHHHhc
Confidence 665554444556555555555555555443
No 185
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.49 E-value=0.055 Score=39.75 Aligned_cols=80 Identities=19% Similarity=0.134 Sum_probs=53.9
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHH
Q 007863 403 VELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVL 481 (587)
Q Consensus 403 ~~~~~~~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 481 (587)
...+.|+...+|..++..+..+...-. .....+.++.+++..++|+++-|=-.|++++..++...+ +.++|.+.
T Consensus 9 l~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-----~~vl~~L~ 83 (92)
T PF10363_consen 9 LSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-----DEVLPILL 83 (92)
T ss_pred HHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-----HHHHHHHH
Confidence 334566666677777777766665544 333356778888888888888888888888888887654 33666666
Q ss_pred hhhcCC
Q 007863 482 EMINNP 487 (587)
Q Consensus 482 ~~l~~~ 487 (587)
+...++
T Consensus 84 ~~y~~~ 89 (92)
T PF10363_consen 84 DEYADP 89 (92)
T ss_pred HHHhCc
Confidence 655443
No 186
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=1.2 Score=45.33 Aligned_cols=141 Identities=9% Similarity=0.057 Sum_probs=90.5
Q ss_pred hhhhHHHHHHHhc-----C---CCcHHHHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 007863 395 SQSLLPAIVELAE-----D---RHWRVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWLKDKVYSIRDAAANNVK 461 (587)
Q Consensus 395 ~~~~~~~l~~~~~-----~---~~~~vr~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 461 (587)
.+.+++.+.+.+. + .+.+-...+++.+..+...+.. ..+...+++.++..++++.--.|..|+..+.
T Consensus 406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is 485 (970)
T COG5656 406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence 3667777777662 1 3455566777777777663321 2234456777888889999999999999999
Q ss_pred HHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH-HHHHhHHH---HHHhhcCCCCccHHHHHH
Q 007863 462 RLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE-ITCSQLLP---VVINASKDRVPNIKFNVA 535 (587)
Q Consensus 462 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~~l~---~l~~~l~d~~~~vR~~a~ 535 (587)
.+...+........+.....+.+++.+..++..|+.++.-+...-... .+..++-+ .++.+.++-+-++=..++
T Consensus 486 ~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vM 563 (970)
T COG5656 486 TIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVM 563 (970)
T ss_pred HHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHH
Confidence 987666655444556666666778888899999999998887643322 23334333 444444443333333333
No 187
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.45 E-value=0.98 Score=48.46 Aligned_cols=128 Identities=16% Similarity=0.114 Sum_probs=90.9
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh---C-hhhhhhchHHHHHh
Q 007863 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF---G-PDWAMQHIVPQVLE 482 (587)
Q Consensus 407 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~-~~~~~~~~~~~l~~ 482 (587)
.|-.+.+|..+++.++.++..++.-++.+.++..+--.|.|.+..||...+++|..+...- + -+.|.+.+-..+.+
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVe 376 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVE 376 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 5678899999999999999988777777777777767789999999999999999988751 1 12245566666667
Q ss_pred hh-cCCccHHHHHHHHHHHHhhc--ccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHH
Q 007863 483 MI-NNPHYLYRMTILQAISLLAP--VMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 539 (587)
Q Consensus 483 ~l-~~~~~~~r~~a~~~l~~l~~--~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~ 539 (587)
+. .|-+..||..++..+..... .+.. .=+-.+..+.-|.++.++.++...+.
T Consensus 377 Madrd~~~~Vrav~L~~~~~~~~~g~L~d-----~di~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 377 MADRDRNVSVRAVGLVLCLLLSSSGLLSD-----KDILIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred HHhhhcchhHHHHHHHHHHHHhcccccCh-----hHHHHHHHHHhccCcchHHHHHHHHH
Confidence 66 55677788888776655532 2221 12234455666778888887777664
No 188
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.44 E-value=0.02 Score=47.54 Aligned_cols=74 Identities=12% Similarity=0.265 Sum_probs=46.9
Q ss_pred hhhhhchHHHHHhhhcCCcc-HHHHHHHHHHHHhhcccCh--HHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHh
Q 007863 470 DWAMQHIVPQVLEMINNPHY-LYRMTILQAISLLAPVMGS--EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 470 ~~~~~~~~~~l~~~l~~~~~-~~r~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~ 543 (587)
+++....+..+...++|+.. ..+..++.++..+.+..|. -.+.+.++|.++..+....+..|.....-|+.+..
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34455566677777777643 3444566666666654443 34677788888877776666777777666666543
No 189
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.41 E-value=0.049 Score=40.02 Aligned_cols=79 Identities=20% Similarity=0.220 Sum_probs=50.6
Q ss_pred HHHHhhhcCCccHHHHHHHHHHHHhhcccC-hHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHH
Q 007863 478 PQVLEMINNPHYLYRMTILQAISLLAPVMG-SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRP 556 (587)
Q Consensus 478 ~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~ 556 (587)
......+.||...+|..++..+..+...-. .....+.++..+...++|+++-|=.+|++++..++...+ +.++|
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-----~~vl~ 80 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-----DEVLP 80 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-----HHHHH
Confidence 334455667777777777777777766544 333356677777777777777777777777777776643 23555
Q ss_pred HHHHh
Q 007863 557 CLVEL 561 (587)
Q Consensus 557 ~l~~l 561 (587)
.|.+.
T Consensus 81 ~L~~~ 85 (92)
T PF10363_consen 81 ILLDE 85 (92)
T ss_pred HHHHH
Confidence 55553
No 190
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=1.7 Score=44.69 Aligned_cols=323 Identities=15% Similarity=0.122 Sum_probs=175.7
Q ss_pred HHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccC-chhHHHHHHHHHHHHhcccChhhhhh
Q 007863 163 ELRTIYRQ-LCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEPQDCVA 240 (587)
Q Consensus 163 ~l~~~l~~-l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~ 240 (587)
+.++.+.. .-++.-++=|+.|+..|-.+++....+-...-+-|++..+-.|. +++.-..+.+++..+..+-..+
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~---- 97 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP---- 97 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch----
Confidence 33443333 33344566788888888888876544333333444444444443 3455555555555544332100
Q ss_pred chHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH-----
Q 007863 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL----- 315 (587)
Q Consensus 241 ~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----- 315 (587)
...|.+..+-... ..+ +..+-. .++.+..+...+...+-.||..+++.+..+....+.+.
T Consensus 98 --------~v~dds~qsdd~g-~~i---ae~fik---~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll 162 (970)
T KOG0946|consen 98 --------EVMDDSTQSDDLG-LWI---AEQFIK---NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALL 162 (970)
T ss_pred --------hhcccchhhhHHH-HHH---HHHHHc---CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 0001111111111 112 221111 34678888888888888999999999999999888762
Q ss_pred HHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch---HHHHHhHHHHHHHhcCCC----ChHHHHHHHHHhHHhhhh
Q 007863 316 AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDE----FPDVRLNIISKLDQVNQV 388 (587)
Q Consensus 316 ~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~----~~~vr~~a~~~l~~i~~~ 388 (587)
..+.-+..++.++.|..+.+|..++-.+..+....+. -...+.++..+..++..+ ..-|...++..+..+.+.
T Consensus 163 ~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 163 VSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN 242 (970)
T ss_pred HCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh
Confidence 1244566678888999999999999888888765442 112233444444444332 134666677777776654
Q ss_pred hchh-h-H-hhhhHHHHHHHh-----cCC---CcHHHH-HHH-HHHHHHHHhhChh------------hHHHHHHHHHHH
Q 007863 389 IGID-L-L-SQSLLPAIVELA-----EDR---HWRVRL-AII-EYIPLLASQLGVG------------FFDDKLGALCMQ 443 (587)
Q Consensus 389 ~~~~-~-~-~~~~~~~l~~~~-----~~~---~~~vr~-~~~-~~l~~l~~~~~~~------------~~~~~l~~~l~~ 443 (587)
-..+ . + ....+|.+..++ .|. .|..+. ..+ ..+..+...+.+. .....++..+-.
T Consensus 243 N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~ 322 (970)
T KOG0946|consen 243 NISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCT 322 (970)
T ss_pred CcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHH
Confidence 3322 1 1 234567766544 342 464332 222 2222222222111 122344555544
Q ss_pred HcCCC--chHHHHHHHHHHHHHHHHhChh--hhh-----------hchHHHHHhhhcCC-ccHHHHHHHHHHHHhhc
Q 007863 444 WLKDK--VYSIRDAAANNVKRLAEEFGPD--WAM-----------QHIVPQVLEMINNP-HYLYRMTILQAISLLAP 504 (587)
Q Consensus 444 ~l~d~--~~~vr~~a~~~l~~l~~~~~~~--~~~-----------~~~~~~l~~~l~~~-~~~~r~~a~~~l~~l~~ 504 (587)
.+-.+ ..+|+..++.+++.+++..... .|. ..++=.++.+.+.. .+..|.+...++..+..
T Consensus 323 il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~ 399 (970)
T KOG0946|consen 323 ILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLY 399 (970)
T ss_pred HHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHh
Confidence 44433 5689999999999998744321 111 22333334444443 47789999998877753
No 191
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.26 E-value=1.5 Score=44.05 Aligned_cols=128 Identities=14% Similarity=0.132 Sum_probs=71.3
Q ss_pred HHHHHHHHHhHHHHHHh--hCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhh-hchHHHHHhHHHHHHHhcC--
Q 007863 294 AEVRIAAAGKVTKICRI--LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI-LGKDATIEQLLPIFLSLLK-- 368 (587)
Q Consensus 294 ~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~-~~~~~~~~~l~~~l~~~l~-- 368 (587)
...-+.++..+..+..+ ++.+. ...++..+....+-. .....+-+.+..++.. .|. ..+..+...+.
T Consensus 191 ~~di~~~L~vldaii~y~~iP~~s-l~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-----~~i~~L~~iL~~~ 262 (464)
T PF11864_consen 191 EDDIEACLSVLDAIITYGDIPSES-LSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-----SAIRTLCDILRSP 262 (464)
T ss_pred HHHHHHHHHHHHHHHHcCcCChHH-HHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-----HHHHHHHHHHccc
Confidence 33346777777777663 33332 244444444332222 3444444555555532 222 22334444442
Q ss_pred ----CCChHHHHHHHHHhHHhhhhhchhhH------hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHH-HhhC
Q 007863 369 ----DEFPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLA-SQLG 429 (587)
Q Consensus 369 ----d~~~~vr~~a~~~l~~i~~~~~~~~~------~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~-~~~~ 429 (587)
.++..+-.+|+..+..+.-..|.+.+ ...++|.+...++.++..+-..++..+..+. +.++
T Consensus 263 ~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~ 334 (464)
T PF11864_consen 263 DPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYG 334 (464)
T ss_pred CccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhh
Confidence 23456667888888887655533321 1238889988888888888777777777766 4444
No 192
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=1.7 Score=44.67 Aligned_cols=399 Identities=12% Similarity=0.117 Sum_probs=195.0
Q ss_pred cchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCC--------CHHHHH-HHHHHHHHHHHHHhh-----hhhHHHHHH
Q 007863 140 TARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDD--------MPMVRR-SAATNLGKFAATVEA-----AHLKSEIMS 205 (587)
Q Consensus 140 ~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~--------~~~vR~-~a~~~l~~l~~~~~~-----~~~~~~i~~ 205 (587)
..|-.|=.++..++...++-....++.++....+-. +.-+++ ++-.+.|--+..+.+ .-+.+.++|
T Consensus 412 ~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llp 491 (978)
T KOG1993|consen 412 NLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLP 491 (978)
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCH
Confidence 344444445544444443334444444443222222 223343 333444444443332 223444555
Q ss_pred HHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCC-chHHHHHHHHHHHHHHHHhCC--CCcc---c
Q 007863 206 IFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGP--EPTR---S 279 (587)
Q Consensus 206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~--~~~~---~ 279 (587)
-+. ...+....+|+-.+-.++...+.--+.+..+.+...+.++++|. +-.||.++++++........- +.+. +
T Consensus 492 El~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~le 570 (978)
T KOG1993|consen 492 ELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLE 570 (978)
T ss_pred Hhh-hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHH
Confidence 444 12222345677777777766554334445666777888999998 778999999999888775432 1111 1
Q ss_pred chHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcC--CCcHHHHHHHHHHHHhhhhhhchH-
Q 007863 280 DVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSS--DSSQHVRSALATVIMGMAPILGKD- 353 (587)
Q Consensus 280 ~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~--d~~~~vr~~a~~~l~~l~~~~~~~- 353 (587)
.+...+.++++. .+-+.|...+..++.+....++. ++...++.++-.+.. .+++-.|.+.+..+.++...+|.+
T Consensus 571 nlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS 650 (978)
T KOG1993|consen 571 NLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQS 650 (978)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCC
Confidence 222223333332 33556777788888777765543 233334444433332 356788999999999998887743
Q ss_pred -HHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh-----hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 007863 354 -ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (587)
Q Consensus 354 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~-----~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 427 (587)
.+.+.+.|.+.....-++|+-..-...++.-....++.. ++ -.++|.+...++-.....| .+++.+..-.-.
T Consensus 651 ~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~l-l~L~p~l~~~iE~ste~L~-t~l~Ii~sYilL 728 (978)
T KOG1993|consen 651 FEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPEL-LLLFPHLLYIIEQSTENLP-TVLMIISSYILL 728 (978)
T ss_pred ccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHH-HHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhh
Confidence 344566676655544444443333223333332222211 11 1345555544443322222 223333332222
Q ss_pred hChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh-------ChhhhhhchHHHHHhh--hcCCccHHHHHHHHH
Q 007863 428 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF-------GPDWAMQHIVPQVLEM--INNPHYLYRMTILQA 498 (587)
Q Consensus 428 ~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-------~~~~~~~~~~~~l~~~--l~~~~~~~r~~a~~~ 498 (587)
.+..+...+. .-+.+.+.+--.+||.....++-.+...+ |.- ....++|.++.. .+++.+.+-...+..
T Consensus 729 d~~~fl~~y~-~~i~k~~~~~l~dvr~egl~avLkiveili~t~~il~~~-~~~~~L~~lf~~I~~~~~yP~~~~~yl~v 806 (978)
T KOG1993|consen 729 DNTVFLNDYA-FGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNPILGSL-LFSPLLSRLFLSIAENDKYPYVMGEYLLV 806 (978)
T ss_pred ccHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhh-hcchhhHHHHHHHHhCCCCchhHHHHHHH
Confidence 2333222222 22222233333456666666655444321 211 235567766654 355555555555555
Q ss_pred HHHhhcccChHH-------------HHHhHHHHHHhhcCC-CCccHHHHHHHHHHHHHhh
Q 007863 499 ISLLAPVMGSEI-------------TCSQLLPVVINASKD-RVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 499 l~~l~~~~~~~~-------------~~~~~l~~l~~~l~d-~~~~vR~~a~~~l~~l~~~ 544 (587)
++.+.-. .++. ....++..-..+..+ +.+.-|.--+-++..+...
T Consensus 807 vaRi~l~-n~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t 865 (978)
T KOG1993|consen 807 VARISLR-NPSLFMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRT 865 (978)
T ss_pred HHHHHhc-ChHHHHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhcc
Confidence 5555421 1111 112223333333333 3567777777777776654
No 193
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.10 E-value=5.1 Score=48.78 Aligned_cols=281 Identities=12% Similarity=0.112 Sum_probs=156.5
Q ss_pred hhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHh----CCC------CcccchHHHHHHhcCCChHHHHHHHHHhHHHHH
Q 007863 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV----GPE------PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKIC 308 (587)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~----~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 308 (587)
...+++.+...+...+..++.....++..+.... |.. .....+++-+.+++.|+.|.-|.+.+..++.+.
T Consensus 982 ~~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~ 1061 (3550)
T KOG0889|consen 982 PSTFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLI 1061 (3550)
T ss_pred HHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeeh
Confidence 3457888888899999999999999988775532 321 112347777888899999999999999998888
Q ss_pred HhhCHHHH---HHhHHHHHhHhcCCCc--------HHHHHHHHHHHHhhhhhhch----HHHHHhHHHHHHHhcCCCChH
Q 007863 309 RILNPELA---IQHILPCVKELSSDSS--------QHVRSALATVIMGMAPILGK----DATIEQLLPIFLSLLKDEFPD 373 (587)
Q Consensus 309 ~~~~~~~~---~~~~~~~l~~~~~d~~--------~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~ 373 (587)
..+..... ...++..+.-.+.|.. ..++......+..+...... ......++..+..-+.+++..
T Consensus 1062 ~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~ 1141 (3550)
T KOG0889|consen 1062 ESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSD 1141 (3550)
T ss_pred hhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchH
Confidence 87764322 2223333333333321 12222222222222221111 112334555566667788889
Q ss_pred HHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhc---------CCCcHHHHHHHHHHHHHHHhhChhhHH--HHH---HH
Q 007863 374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE---------DRHWRVRLAIIEYIPLLASQLGVGFFD--DKL---GA 439 (587)
Q Consensus 374 vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~---------~~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l---~~ 439 (587)
||..+...|..+....|.+. ..++..+.+++. ..........+..+.... ..+++.+. ..+ ..
T Consensus 1142 VR~~~~~~L~~i~~~s~~~v--~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~-~l~p~~f~~~~~l~~l~~ 1218 (3550)
T KOG0889|consen 1142 VREFSQKLLRLISELSGKSV--VKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCL-SLGPCLFDFTEELYRLKR 1218 (3550)
T ss_pred HHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHH-HcCCcccCchHHHHHHHH
Confidence 99999999999988776542 233333333331 122222333333322222 22332211 000 00
Q ss_pred H--------------HHHHcC----CCchHHHHHHHHHHHHHHHHhChh-----hhhhchHHHHHhhhcCCccHHHHHHH
Q 007863 440 L--------------CMQWLK----DKVYSIRDAAANNVKRLAEEFGPD-----WAMQHIVPQVLEMINNPHYLYRMTIL 496 (587)
Q Consensus 440 ~--------------l~~~l~----d~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~~~~~l~~~l~~~~~~~r~~a~ 496 (587)
. +..... ...-..|..+.+.++......... .....++..+++.+..+...+-.++.
T Consensus 1219 ~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~ 1298 (3550)
T KOG0889|consen 1219 FLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVAL 1298 (3550)
T ss_pred HHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHH
Confidence 0 011111 112245777777777766543321 13567777777777777788888888
Q ss_pred HHHHHhhc---ccChHHHHHhHHHHHHhh
Q 007863 497 QAISLLAP---VMGSEITCSQLLPVVINA 522 (587)
Q Consensus 497 ~~l~~l~~---~~~~~~~~~~~l~~l~~~ 522 (587)
.++..+.. .++.+......-|.+.++
T Consensus 1299 ~~l~~v~~~~~~~~ke~lq~~lrplL~~l 1327 (3550)
T KOG0889|consen 1299 EGLRKVLAQDVKLPKELLQSHLRPLLMNL 1327 (3550)
T ss_pred HHHHhhhhccccccHHHHHhhHHHHHHhh
Confidence 88877764 355554444444555554
No 194
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=1.6 Score=43.00 Aligned_cols=387 Identities=13% Similarity=0.133 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhh
Q 007863 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCV 239 (587)
Q Consensus 160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 239 (587)
.++.++..+..+...++ .+|.+.+-++..++-.++ .+.+.+...+..+.+++ +.++ ++-.+.+.+|++...
T Consensus 60 lrdsl~thl~~l~~~~~-~i~tQL~vavA~Lal~~~--~W~n~I~e~v~~~~~~~-~~~~-----~lLeiL~VlPEE~~~ 130 (559)
T KOG2081|consen 60 LRDSLITHLKELHDHPD-VIRTQLAVAVAALALHMP--EWVNPIFELVRALSNKH-PAVP-----ILLEILKVLPEETRD 130 (559)
T ss_pred HHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHHhH--hhcchHHHHHHHhhcCC-ccHH-----HHHHHHHhCcHhhcc
Confidence 45566667766666665 888888888888877664 34444555555554443 3233 344444455443111
Q ss_pred hchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC---hHHHHHHHHHhHHHHHH--hhCHH
Q 007863 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN---EAEVRIAAAGKVTKICR--ILNPE 314 (587)
Q Consensus 240 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~---~~~vr~~a~~~l~~l~~--~~~~~ 314 (587)
.... ...+ -|...... +... ...++..+..+++++ +..+-..++++++.-.. .+.++
T Consensus 131 ~~~~-----~~a~----Rr~e~~~~---l~~~------~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d 192 (559)
T KOG2081|consen 131 IRLT-----VGAN----RRHEFIDE---LAAQ------VSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPD 192 (559)
T ss_pred hhhh-----hhhh----hHHHHHHH---HHHh------HHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHH
Confidence 1100 0000 01111111 1111 223445555555432 24555666666666555 33443
Q ss_pred HHH-H-hHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch-HH---HH------HhHHHHHHH-hcCCCChHHHHHHHHH
Q 007863 315 LAI-Q-HILPCVKELSSDSSQHVRSALATVIMGMAPILGK-DA---TI------EQLLPIFLS-LLKDEFPDVRLNIISK 381 (587)
Q Consensus 315 ~~~-~-~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~---~~------~~l~~~l~~-~l~d~~~~vr~~a~~~ 381 (587)
.+. . .++......++ +...-..|.+++..+....-. +. +. ..++|...+ .....+.+-+.+..+-
T Consensus 193 ~v~a~~pLi~l~F~sl~--~~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RI 270 (559)
T KOG2081|consen 193 QVLASFPLITLAFRSLS--DDELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRI 270 (559)
T ss_pred HHHhhhHHHHHHHHHcc--cchhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHH
Confidence 221 1 34444445554 334455555555554433210 00 11 112222222 2233445556666666
Q ss_pred hHHhhhhhc------hhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh-------hHHHH---HHHHHHHHc
Q 007863 382 LDQVNQVIG------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-------FFDDK---LGALCMQWL 445 (587)
Q Consensus 382 l~~i~~~~~------~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~-------~~~~~---l~~~l~~~l 445 (587)
+..+++..- +++. -.++..+.-....++|++-.........+.+.+... .|.++ ++..+....
T Consensus 271 Ftel~eaf~~~i~~np~~~-l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~ 349 (559)
T KOG2081|consen 271 FTELGEAFVVLISTNPEEF-LRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHV 349 (559)
T ss_pred HHHHHHHHHHHHhhCCCcc-hhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHc
Confidence 666654432 1211 123333344446677777666666655555544211 11222 222222222
Q ss_pred C------------CCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHH
Q 007863 446 K------------DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCS 513 (587)
Q Consensus 446 ~------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~ 513 (587)
+ ++..+-|......+..+....|.+...+...-.+.+ +.+.|+.-++++..+..++..+.++ ..
T Consensus 350 qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~--e~ 425 (559)
T KOG2081|consen 350 QLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE--EN 425 (559)
T ss_pred cCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc--cc
Confidence 1 233578899999999988888876433333322222 4567999999999999999987765 35
Q ss_pred hHHHHHHhhcCC--CCccHHHHHHHHHHHHHhhhchH-HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863 514 QLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 514 ~~l~~l~~~l~d--~~~~vR~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~ 582 (587)
.++|.+++...+ ....+|.+++..+|.+.+.+... ...+-++..+.....+.. ....|..++..+++
T Consensus 426 ~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~ 495 (559)
T KOG2081|consen 426 TIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICS 495 (559)
T ss_pred chHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHH
Confidence 677777666543 24459999999999998887664 333444444455444444 55566666666554
No 195
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=96.04 E-value=0.95 Score=43.41 Aligned_cols=70 Identities=14% Similarity=0.088 Sum_probs=50.2
Q ss_pred hhchHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHH
Q 007863 239 VAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR 309 (587)
Q Consensus 239 ~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 309 (587)
...+...+..++. +.+.........+|..-...+ .....+.++..+.+.++|..+.+|+.-+..++....
T Consensus 20 s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 20 SSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 3444444444433 567777888888887776666 333356788999999999888899999988888876
No 196
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=96.01 E-value=1.8 Score=42.81 Aligned_cols=290 Identities=15% Similarity=0.146 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhh---hchHHHHHHhcCCC
Q 007863 177 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCV---AHILPVIVNFSQDK 253 (587)
Q Consensus 177 ~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~~~d~ 253 (587)
...|..++++||.++..++.+......-+.+..++++....-|..+.-.+...+......... +.+.+.+...++++
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 567889999999999998765555555567888888888888888888888888776542222 35666666666633
Q ss_pred c-----------hHHHHHHHHHHHHHHHHhCCCCcccchHHHH---HHhcCCCh------HHHHHHHHHhHHHHHHhhCH
Q 007863 254 S-----------WRVRYMVANQLYELCEAVGPEPTRSDVVPAY---VRLLRDNE------AEVRIAAAGKVTKICRILNP 313 (587)
Q Consensus 254 ~-----------~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l---~~~l~d~~------~~vr~~a~~~l~~l~~~~~~ 313 (587)
. .++|..+-..+..+... |. ....-+|.+ .+.-.+.. ....+.+-..+..+...+++
T Consensus 181 ~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~-g~--~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~ 257 (441)
T PF12054_consen 181 EPPYYDELVPSLKRLRTECQQLLATFRDV-GK--VPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSP 257 (441)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHh-CC--CChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 2 23455555544444332 22 111112222 11111111 22233333334444444432
Q ss_pred HHH----------HHhHH---HHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHH
Q 007863 314 ELA----------IQHIL---PCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIIS 380 (587)
Q Consensus 314 ~~~----------~~~~~---~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~ 380 (587)
... ...+. ..+...-..-+-+|+.+++.++..+... + +...+.|.|++...=++++..++..++.
T Consensus 258 ~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~l-P-~KLnPiIrpLMdSIK~Een~~LQ~rsA~ 335 (441)
T PF12054_consen 258 SQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGL-P-KKLNPIIRPLMDSIKREENELLQQRSAE 335 (441)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-C-CCccHHHHHHHHHhhccccHHHHHHHHH
Confidence 210 01122 2222222223456666666666665432 2 2233445566666666788999999999
Q ss_pred HhHHhhhhhchh--hHhhhhHHHHHHHhc-CC--CcHHH--HHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHH
Q 007863 381 KLDQVNQVIGID--LLSQSLLPAIVELAE-DR--HWRVR--LAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIR 453 (587)
Q Consensus 381 ~l~~i~~~~~~~--~~~~~~~~~l~~~~~-~~--~~~vr--~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr 453 (587)
++..++...... .-.+.++..+..++. |. -+.+- ...-..+-.+.+.-... +.-...-..--...-.-.|
T Consensus 336 slA~Li~~~~~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~~~~~---~~~~~~~~~~~~~~a~I~R 412 (441)
T PF12054_consen 336 SLARLIQLCVDRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKEEDKA---DHADAASEEREQKEARIQR 412 (441)
T ss_pred HHHHHHHHHhCCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhhcccc---cccccccchhhhhhhHHHh
Confidence 999988665311 112467777766653 21 11111 00000000001000000 0000000000001122458
Q ss_pred HHHHHHHHHHHHHhChhhhhh
Q 007863 454 DAAANNVKRLAEEFGPDWAMQ 474 (587)
Q Consensus 454 ~~a~~~l~~l~~~~~~~~~~~ 474 (587)
..|..+|..++..||.+.|..
T Consensus 413 rGA~~aL~~l~~~FG~~Lf~~ 433 (441)
T PF12054_consen 413 RGAELALEQLAKRFGSSLFEK 433 (441)
T ss_pred cCHHHHHHHHHHHHhHHHHHh
Confidence 999999999999999997654
No 197
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=2 Score=43.18 Aligned_cols=279 Identities=16% Similarity=0.069 Sum_probs=132.7
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHH
Q 007863 283 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI 362 (587)
Q Consensus 283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 362 (587)
..+-+.+..++..++..|+-.++-.......+ .+.++-.+...+++++..+|.+++--++-....... +.++..
T Consensus 418 ~qldkylys~~~~ikaGaLLgigi~~~gv~ne--~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~----e~V~~l 491 (878)
T KOG2005|consen 418 EQLDKYLYSDESYIKAGALLGIGISNSGVFNE--CDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQR----EEVLEL 491 (878)
T ss_pred HHHHHHhhcCCchhhhccceeeeeeccccccc--cCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCch----HHHHHH
Confidence 33344444455566666665555443322222 244566667777888888998888776654333222 233345
Q ss_pred HHHhcCCCChH--HHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhChhhHHHHHH
Q 007863 363 FLSLLKDEFPD--VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 438 (587)
Q Consensus 363 l~~~l~d~~~~--vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 438 (587)
+...+.|.+.. |...+.-+++.+.-..-+++....++..+.+--+ -.+...|-.++..- .-.+|.....+...
T Consensus 492 L~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~---llflgkqe~~d~~~ 568 (878)
T KOG2005|consen 492 LSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLA---LLFLGKQESVDAVV 568 (878)
T ss_pred HhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHH---HHHhcccchHHHHH
Confidence 66667776555 5555555555544322234444555555544322 12333443332211 11122221122222
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchH-HHHHhhhcCCcc-HHHHHHHHHHHHhhcccChHHHHHhHH
Q 007863 439 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIV-PQVLEMINNPHY-LYRMTILQAISLLAPVMGSEITCSQLL 516 (587)
Q Consensus 439 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~~~l 516 (587)
..+ ..-...+|..+ ..+-..|...|..... .+- ..+...-.++.. .-...-...++.-.-.+|.+.-.+-.+
T Consensus 569 e~~----~~i~~~~~~~~-~~lv~~caYaGTGnvl-~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~l 642 (878)
T KOG2005|consen 569 ETI----KAIEGPIRKHE-SILVKSCAYAGTGNVL-KIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVL 642 (878)
T ss_pred HHH----HHhhhHHHHHH-HHHHHHhhccccCceE-EechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHH
Confidence 221 11112233222 2222233333322110 010 111111111110 000000112222222334443334455
Q ss_pred HHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007863 517 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSK 580 (587)
Q Consensus 517 ~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l 580 (587)
..+-.++.-..+++|...--+++.++..-+ +-.++..|.++.+|.|.+|..+|.-+++-+
T Consensus 643 R~f~h~l~yge~~iRravPLal~llsvSNP----q~~vlDtLsk~shd~D~eva~naIfamGLi 702 (878)
T KOG2005|consen 643 RHFGHLLHYGEPHIRRAVPLALGLLSVSNP----QVNVLDTLSKFSHDGDLEVAMNAIFAMGLI 702 (878)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhhhccCCC----cchHHHHHHHhccCcchHHHHHHHHHhccc
Confidence 555566666788888888888888765422 125788888888999999988888887654
No 198
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=1.4 Score=40.98 Aligned_cols=175 Identities=14% Similarity=0.117 Sum_probs=103.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhh-h-H-HHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChh---hhhhchHHHH
Q 007863 173 QDDMPMVRRSAATNLGKFAATVEAAH-L-K-SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVI 246 (587)
Q Consensus 173 ~~~~~~vR~~a~~~l~~l~~~~~~~~-~-~-~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l 246 (587)
.+.++.-|..+..-|..++..+.... + . .-+.+.+. ++++.+..+|..|+..++...+.-++. -.....++.+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 34456777778888888777765421 1 1 12334444 888888999999999999988877761 1222234434
Q ss_pred H-HhcCCCchHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcCC--ChHHHHHHHHHhHHHHHHhhCHH--HHHH
Q 007863 247 V-NFSQDKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRD--NEAEVRIAAAGKVTKICRILNPE--LAIQ 318 (587)
Q Consensus 247 ~-~~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~--~~~~ 318 (587)
. .+.+|++..+|..|.-+++.+........ ..-.=...+...+++ .+...+.-++..+..+...-..+ ....
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 3 34456777888999988888887654311 111224455555655 45666777777777776643222 1222
Q ss_pred hHHHHH-hHhcCCCcHHHHHHHHHHHHhhhh
Q 007863 319 HILPCV-KELSSDSSQHVRSALATVIMGMAP 348 (587)
Q Consensus 319 ~~~~~l-~~~~~d~~~~vr~~a~~~l~~l~~ 348 (587)
..++.. ..+...-++.++..+...+.....
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 222322 233444566777777666555543
No 199
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.94 E-value=0.22 Score=47.45 Aligned_cols=73 Identities=19% Similarity=0.342 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHc----------CCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCc--cHHHHHHHH
Q 007863 432 FFDDKLGALCMQWL----------KDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPH--YLYRMTILQ 497 (587)
Q Consensus 432 ~~~~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~--~~~r~~a~~ 497 (587)
.+.-.++|.++.++ .+..|.+|..|+..++.+++.++... ....++..+.+.+.|+. ......|+.
T Consensus 254 ~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~ 333 (343)
T cd08050 254 PYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIV 333 (343)
T ss_pred HhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHH
Confidence 34455777777665 35679999999999999999998763 34556666666666653 445778888
Q ss_pred HHHHhhc
Q 007863 498 AISLLAP 504 (587)
Q Consensus 498 ~l~~l~~ 504 (587)
.+..++.
T Consensus 334 GL~~lG~ 340 (343)
T cd08050 334 GLSALGP 340 (343)
T ss_pred HHHHhCc
Confidence 8877764
No 200
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.93 E-value=0.2 Score=41.89 Aligned_cols=112 Identities=20% Similarity=0.209 Sum_probs=87.7
Q ss_pred hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH---HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHH---Hhhhch
Q 007863 474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSL---IPIVDQ 547 (587)
Q Consensus 474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l---~~~~~~ 547 (587)
+.++|.+++-+.+.+...|..|...+..+...-+.+ .+.+.+++.+...++..++.|...++++|..+ ...+|+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 678999999998888889999999999998873333 34677888888999999999999999999999 555665
Q ss_pred H--HHHHhHHHHHHHhcC-----------CCCccHHHHHHHHHHHHHHHhh
Q 007863 548 S--VVEKSIRPCLVELSE-----------DPDVDVRFFATQALQSKDQVMM 585 (587)
Q Consensus 548 ~--~~~~~i~~~l~~l~~-----------d~~~~Vr~~a~~al~~l~~~~~ 585 (587)
. ++...++|.+..+.+ ....+++.....+|..+.+.=|
T Consensus 117 aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG 167 (183)
T PF10274_consen 117 ALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGG 167 (183)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcC
Confidence 4 666788888875432 2456788888888887766543
No 201
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.69 E-value=2.4 Score=41.87 Aligned_cols=192 Identities=13% Similarity=0.154 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHhh---h---hhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcc
Q 007863 160 LKTELRTIYRQLCQDD-MPMVRRSAATNLGKFAATVEA---A---HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL 232 (587)
Q Consensus 160 ~~~~l~~~l~~l~~~~-~~~vR~~a~~~l~~l~~~~~~---~---~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 232 (587)
....+..++...++++ +|..-....++++.+++...+ + .+.+.++|.+...++.+-.+.--.+...++.+.+.
T Consensus 68 il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~ 147 (435)
T PF03378_consen 68 ILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLEL 147 (435)
T ss_dssp HHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455666666666654 688889999999999887543 1 46788999999888876444444555666666655
Q ss_pred cChhhhhhchHHHHHHhcCCCchHHH---HHHHHHHHHHHHHhCCC----CcccchHHHHHHhcCCChHHHHHHHHHhHH
Q 007863 233 LEPQDCVAHILPVIVNFSQDKSWRVR---YMVANQLYELCEAVGPE----PTRSDVVPAYVRLLRDNEAEVRIAAAGKVT 305 (587)
Q Consensus 233 ~~~~~~~~~l~~~l~~~~~d~~~~vR---~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 305 (587)
-+.....+....++..++...-|+-| -+..+.|..+...-+.. .....++.++.+++..+..+ ..+...|.
T Consensus 148 ~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~ 225 (435)
T PF03378_consen 148 RPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLE 225 (435)
T ss_dssp SS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHH
Confidence 44211222222223333344444422 22234444444433322 12335778888888765422 45778899
Q ss_pred HHHHhhCHHH---HHHhHHHHHhHhc-CCCcHHHHHHHHHHHHhhhhhhchH
Q 007863 306 KICRILNPEL---AIQHILPCVKELS-SDSSQHVRSALATVIMGMAPILGKD 353 (587)
Q Consensus 306 ~l~~~~~~~~---~~~~~~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~ 353 (587)
.+...++.+. +.+.++..+.+.+ +.+.++.+...+..++-++...|.+
T Consensus 226 ~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~ 277 (435)
T PF03378_consen 226 SIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPD 277 (435)
T ss_dssp HHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHH
Confidence 9999888763 4455666655544 3556666666666666665444443
No 202
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=95.67 E-value=0.88 Score=45.00 Aligned_cols=145 Identities=13% Similarity=0.060 Sum_probs=72.3
Q ss_pred CcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhh-cC
Q 007863 410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMI-NN 486 (587)
Q Consensus 410 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l-~~ 486 (587)
+-+|+..+..++-.+.. ++ +-..+-+.|++...-+.++..++..++.++..++..+.... -.++++..|..++ .|
T Consensus 289 ~~~V~Aa~A~A~v~l~~-lP-~KLnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D 366 (441)
T PF12054_consen 289 DVRVLAAAASALVALGG-LP-KKLNPIIRPLMDSIKREENELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVD 366 (441)
T ss_pred HHHHHHHHHHHHHHhcc-CC-CCccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccC
Confidence 34444444444443322 22 22334455555555677888999999999999998765321 2366777777665 23
Q ss_pred Cc--cHHH--HHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHh
Q 007863 487 PH--YLYR--MTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL 561 (587)
Q Consensus 487 ~~--~~~r--~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l 561 (587)
+. +..- ...-..|-.+.+.-.. .......-..--...-.-.|..|..+|..++..+|.+-| .-+|.|.++
T Consensus 367 ~seTP~~~~~~~~~~gILsl~k~~~~---~~~~~~~~~~~~~~~a~I~RrGA~~aL~~l~~~FG~~Lf--~~lP~Lw~~ 440 (441)
T PF12054_consen 367 TSETPEFSHNVDKKDGILSLRKEEDK---ADHADAASEEREQKEARIQRRGAELALEQLAKRFGSSLF--EKLPKLWEC 440 (441)
T ss_pred cccCCCCCCCcchhhcccchhhhccc---ccccccccchhhhhhhHHHhcCHHHHHHHHHHHHhHHHH--HhhhHHHhh
Confidence 21 1100 0000000000000000 000000000001112345788899999999999988765 346666554
No 203
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=95.57 E-value=1.7 Score=41.66 Aligned_cols=49 Identities=14% Similarity=0.024 Sum_probs=34.2
Q ss_pred HhHHHHHHhhcCCC--CccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhc
Q 007863 513 SQLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELS 562 (587)
Q Consensus 513 ~~~l~~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~ 562 (587)
..+...++.++.++ .+.+|..|.+++..++...+.. +...++..+.+.+
T Consensus 203 ~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~~~l 253 (339)
T PF12074_consen 203 SAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLWKWL 253 (339)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHH
Confidence 34555566666666 8999999999999998765433 5556666666643
No 204
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.54 E-value=0.9 Score=42.93 Aligned_cols=184 Identities=12% Similarity=0.129 Sum_probs=93.2
Q ss_pred hhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC
Q 007863 195 EAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP 274 (587)
Q Consensus 195 ~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~ 274 (587)
++++...+++..+.+++.++...+. .+..+...- .......+.+++..+++.++..++..+..++...+.
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~~~~-----~~~~~~~~~-----~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~ 138 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPSRVE-----LFLELAKQD-----DSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPK 138 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSSSHH-----HHHHHHH-T-----TH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHH-----HHHHhcccc-----cchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCc
Confidence 4456667777777777776643221 222222211 111344444577788999999999999988765443
Q ss_pred CCcc--cchHHHHHHhcC----CChHHHHHHHHHhHHHHHHhhC--HHHHHHhHHHHHhHhc-----CC--CcHHHHHHH
Q 007863 275 EPTR--SDVVPAYVRLLR----DNEAEVRIAAAGKVTKICRILN--PELAIQHILPCVKELS-----SD--SSQHVRSAL 339 (587)
Q Consensus 275 ~~~~--~~l~~~l~~~l~----d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~-----~d--~~~~vr~~a 339 (587)
.... ..+++.+.+.+. .++.+++..++.++..+...-. ...+....++.+.+.+ .+ .+..+...+
T Consensus 139 ~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ 218 (312)
T PF03224_consen 139 RSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQA 218 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHH
Confidence 3222 145555555544 3556778889999998876311 1122344555555555 22 234555666
Q ss_pred HHHHHhhhhh--hchHHHHHhHHHHHHHhcCCC-ChHHHHHHHHHhHHhhhh
Q 007863 340 ATVIMGMAPI--LGKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQV 388 (587)
Q Consensus 340 ~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~i~~~ 388 (587)
+-++..+.-. .-.......++|.+...+++. .+.|-.-++..+.+++..
T Consensus 219 ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~ 270 (312)
T PF03224_consen 219 LLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSK 270 (312)
T ss_dssp HHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 6555544311 111122234677777776654 345555555556655544
No 205
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=95.45 E-value=0.58 Score=39.18 Aligned_cols=123 Identities=14% Similarity=0.149 Sum_probs=69.4
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhh---hchHHHHHhhhcCCc-cHHHHHHHHHHHHhhcccChH-
Q 007863 435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM---QHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSE- 509 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~~~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~~- 509 (587)
.++..-+.++++++++.-|..++..++..++..+.+.+. ...+..+...++.++ ..++..++.++..+....+..
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 445555666666666666777777666666665555432 334444444444443 345666666666666533221
Q ss_pred --------HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHH
Q 007863 510 --------ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLV 559 (587)
Q Consensus 510 --------~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~ 559 (587)
.....+++.++.++++ ......++.+|..+...++.. ++...+-..+.
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~ 161 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALL 161 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHH
Confidence 1233445555555555 667778888888888776542 34444444433
No 206
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.40 E-value=4.2 Score=42.59 Aligned_cols=360 Identities=11% Similarity=0.075 Sum_probs=199.2
Q ss_pred hHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCc-----hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhc--
Q 007863 217 SVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKS-----WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL-- 289 (587)
Q Consensus 217 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~-----~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-- 289 (587)
..|..-.+.+-...+.++ +...+.+...+-+.+.|.+ |..-.+++-++..++.++|... ...+|.+.+..
T Consensus 439 ~YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~as 515 (982)
T KOG2022|consen 439 SYRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSAS 515 (982)
T ss_pred HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhccc
Confidence 456666666666666665 3355666667777766654 7888888888999999887653 23466665543
Q ss_pred ---CCChHHHHHHHHHhHHHHHHhhCHH-HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch--HHHHHhHHHHH
Q 007863 290 ---RDNEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--DATIEQLLPIF 363 (587)
Q Consensus 290 ---~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l 363 (587)
+-.++..-..+...++.++..++.. .+.+..+|.+.+.+..+... ..+...+..+++.+.. ..+.+.++...
T Consensus 516 ik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s--~q~i~tl~tlC~~C~~~L~py~d~~~a~~ 593 (982)
T KOG2022|consen 516 IKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKES--EQAISTLKTLCETCPESLDPYADQFSAVC 593 (982)
T ss_pred cccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchHH--HHHHHHHHHHHHhhhhhCchHHHHHHHHH
Confidence 2236778888999999999988776 45577788888877644333 3334446777765542 23445555556
Q ss_pred HHhcCCC--ChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHh-------c--CCCcHHHHHHHHHHHHHHHhhC---
Q 007863 364 LSLLKDE--FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-------E--DRHWRVRLAIIEYIPLLASQLG--- 429 (587)
Q Consensus 364 ~~~l~d~--~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~-------~--~~~~~vr~~~~~~l~~l~~~~~--- 429 (587)
...+... ....|..+.+++|.+.+.+.+++....++..+...+ . -+++.-+...+-.+..++..+.
T Consensus 594 ~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~ 673 (982)
T KOG2022|consen 594 YEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLI 673 (982)
T ss_pred HHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccC
Confidence 5655543 367899999999999988876655444333332221 1 1334444444334444333220
Q ss_pred ----------------------hhhHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhh--
Q 007863 430 ----------------------VGFFDDKLGALCMQWL--KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM-- 483 (587)
Q Consensus 430 ----------------------~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~-- 483 (587)
.-.+..+++|.+.+.+ .-....|-+.++...+.=....+.. |....+|.+..+
T Consensus 674 ~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~s-F~~p~l~~l~~Fi~ 752 (982)
T KOG2022|consen 674 NKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTS-FPEPMLPSLCPFIV 752 (982)
T ss_pred CCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhcccccccc-chhhhHHHHHHHHH
Confidence 0112234555555443 2334556666666655444444444 434445554443
Q ss_pred --hcCCccHHHHHHHHHHHHhhc--ccCh----H--HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch------
Q 007863 484 --INNPHYLYRMTILQAISLLAP--VMGS----E--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ------ 547 (587)
Q Consensus 484 --l~~~~~~~r~~a~~~l~~l~~--~~~~----~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~------ 547 (587)
...+....-.-...++..... .+++ + .+....+-.+...--.+++++-......+.++.+..+.
T Consensus 753 r~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~ 832 (982)
T KOG2022|consen 753 RFLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSM 832 (982)
T ss_pred HhccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccch
Confidence 222211111111111111111 1111 1 01222222222222234677777778888888777543
Q ss_pred HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863 548 SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 548 ~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~ 582 (587)
..+...+++.-..++..+.+---.+|.+-+..+.-
T Consensus 833 ~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~ 867 (982)
T KOG2022|consen 833 LAFTSLILICAFILLNSPEPTTIRAASQFLTALAT 867 (982)
T ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 36667778777788888877655555555555543
No 207
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=2.1 Score=38.89 Aligned_cols=58 Identities=26% Similarity=0.272 Sum_probs=42.2
Q ss_pred CCCccHHHHHHHHHHHHHhhh-chHH-HHHhHHHHHHHh-cCCCCccHHHHHHHHHHHHHH
Q 007863 525 DRVPNIKFNVAKVLQSLIPIV-DQSV-VEKSIRPCLVEL-SEDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 525 d~~~~vR~~a~~~l~~l~~~~-~~~~-~~~~i~~~l~~l-~~d~~~~Vr~~a~~al~~l~~ 582 (587)
++++.+|...+++|-.++..- |.+. ....+-|++.++ ...+++++|....+....+..
T Consensus 255 epdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 255 EPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred CCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 568999999999999987553 3333 334678888885 456888998877776665543
No 208
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.37 E-value=2.8 Score=40.41 Aligned_cols=303 Identities=19% Similarity=0.115 Sum_probs=145.1
Q ss_pred hHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC--CCcccchHHHH-HHhcCC-ChHHHHHHHHHhHHHHHHhh-CHHHH
Q 007863 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAY-VRLLRD-NEAEVRIAAAGKVTKICRIL-NPELA 316 (587)
Q Consensus 242 l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l-~~~l~d-~~~~vr~~a~~~l~~l~~~~-~~~~~ 316 (587)
..+.+...+-+++..||.++.+.+..+...... ....-++--++ .++-+| +...-|..|++.+..+...- |.+.+
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~ 105 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI 105 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC
Confidence 334444333333488888888887665532110 00000111111 122233 34567888888888887763 23333
Q ss_pred HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhh
Q 007863 317 IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ 396 (587)
Q Consensus 317 ~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~ 396 (587)
...++..+.....+++.+.|..+++.+.+++-.-+.-.....-+..+...+.|...++ .+
T Consensus 106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~--------------------~~ 165 (371)
T PF14664_consen 106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSI--------------------SE 165 (371)
T ss_pred CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhH--------------------HH
Confidence 4556777777778888889998888888876332211111112223333333322222 23
Q ss_pred hhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH----cCCCch-HHHHHHHHHHHHHHHHhChhh
Q 007863 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW----LKDKVY-SIRDAAANNVKRLAEEFGPDW 471 (587)
Q Consensus 397 ~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~----l~d~~~-~vr~~a~~~l~~l~~~~~~~~ 471 (587)
.++..+..++++++.+.-.. +....+.+...+... ..+... +.-..+..++..+.+...+=.
T Consensus 166 ~l~~~lL~lLd~p~tR~yl~-------------~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl 232 (371)
T PF14664_consen 166 SLLDTLLYLLDSPRTRKYLR-------------PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLL 232 (371)
T ss_pred HHHHHHHHHhCCcchhhhhc-------------CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCcee
Confidence 34444444444443321000 000001111111111 111111 234445555666655443211
Q ss_pred -h-h--hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHh------HHHHHH----hhc---C----------
Q 007863 472 -A-M--QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQ------LLPVVI----NAS---K---------- 524 (587)
Q Consensus 472 -~-~--~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~------~l~~l~----~~l---~---------- 524 (587)
+ . ..-+..+...+.-|+..+|...+..+-.+...-.+.|.... ..+.-. ++. .
T Consensus 233 ~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~ 312 (371)
T PF14664_consen 233 YLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRS 312 (371)
T ss_pred eeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccc
Confidence 0 0 14566677777788888888888888777753322211000 000000 000 0
Q ss_pred CCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCC-CccHHHHHHHHHHHHHHHh
Q 007863 525 DRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDP-DVDVRFFATQALQSKDQVM 584 (587)
Q Consensus 525 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~-~~~Vr~~a~~al~~l~~~~ 584 (587)
...++.-.+....+-.+ .+...+++.|.++..++ ++.++..|.--++.+-.+.
T Consensus 313 ~~~~~l~~~y~aLll~i-------li~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~la 366 (371)
T PF14664_consen 313 SKRPNLVNHYLALLLAI-------LIEAGLLEALVELIESSEDSSLSRKATLLLGELLHLA 366 (371)
T ss_pred cccccHHHHHHHHHHHH-------HHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 01122222222222222 23346888999987766 8889999998888876654
No 209
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.29 E-value=0.3 Score=46.49 Aligned_cols=136 Identities=15% Similarity=0.186 Sum_probs=84.4
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC-------hHHHHHHHHHhHHHHHHh--hCHHH
Q 007863 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN-------EAEVRIAAAGKVTKICRI--LNPEL 315 (587)
Q Consensus 245 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-------~~~vr~~a~~~l~~l~~~--~~~~~ 315 (587)
.+...+.+.+...|..|+..|.. +.....++|.|..++.+. +...-...++....+... +.-+.
T Consensus 182 ~It~a~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~ 254 (343)
T cd08050 182 EITEALVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEP 254 (343)
T ss_pred HHHHHHhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHH
Confidence 33444445667777777665442 333567888888887543 222223333333333331 22346
Q ss_pred HHHhHHHHHhHhc----------CCCcHHHHHHHHHHHHhhhhhhchH--HHHHhHHHHHHHhcCCCC--hHHHHHHHHH
Q 007863 316 AIQHILPCVKELS----------SDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEF--PDVRLNIISK 381 (587)
Q Consensus 316 ~~~~~~~~l~~~~----------~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~--~~vr~~a~~~ 381 (587)
+...++|.+..++ .+.+|.+|..++..+..++..++.. .....+...+.+.+.|+. .....+|+.+
T Consensus 255 Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~G 334 (343)
T cd08050 255 YLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVG 334 (343)
T ss_pred hHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHH
Confidence 6677888877654 2467999999999999999888743 345566666666666543 3447888888
Q ss_pred hHHhhh
Q 007863 382 LDQVNQ 387 (587)
Q Consensus 382 l~~i~~ 387 (587)
|..++.
T Consensus 335 L~~lG~ 340 (343)
T cd08050 335 LSALGP 340 (343)
T ss_pred HHHhCc
Confidence 877653
No 210
>PF05536 Neurochondrin: Neurochondrin
Probab=95.24 E-value=4.2 Score=41.63 Aligned_cols=175 Identities=14% Similarity=0.117 Sum_probs=116.9
Q ss_pred chhHHHHHHHHHHHHhcccCh---hhhhhchHHHHHHhcCCCch-HHHHHHHHHHHHHHHHhCCC---CcccchHHHHHH
Q 007863 215 QDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSW-RVRYMVANQLYELCEAVGPE---PTRSDVVPAYVR 287 (587)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~-~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~ 287 (587)
....+..|+..|..++. .++ +...-.-+|.+...+...+. .+-..+.++|..++.. +.. ......++.+.+
T Consensus 70 ~~~~~~LavsvL~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~e 147 (543)
T PF05536_consen 70 PEEYLSLAVSVLAAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCE 147 (543)
T ss_pred HHHHHHHHHHHHHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHH
Confidence 34567788888888776 111 22233467888888877666 8888888998888732 211 112345666666
Q ss_pred hcCCChHHHHHHHHHhHHHHHHhhCHHH------HHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc--------hH
Q 007863 288 LLRDNEAEVRIAAAGKVTKICRILNPEL------AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--------KD 353 (587)
Q Consensus 288 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~------~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--------~~ 353 (587)
.+.+ .+.....++..+..+....+.+. ....+++.+...........+-.++..++.+....+ ..
T Consensus 148 i~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~ 226 (543)
T PF05536_consen 148 IIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSP 226 (543)
T ss_pred HHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChh
Confidence 6555 55678888888888877766432 223566666666666666777778888888765542 23
Q ss_pred HHHHhHHHHHHHhcCCC-ChHHHHHHHHHhHHhhhhhchh
Q 007863 354 ATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGID 392 (587)
Q Consensus 354 ~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~i~~~~~~~ 392 (587)
.....+...+..+++.. .+.-|..+....+.+.+..|.+
T Consensus 227 ~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 227 KWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 35567777787777664 5778888888888888888765
No 211
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=95.12 E-value=4.4 Score=41.22 Aligned_cols=67 Identities=10% Similarity=0.071 Sum_probs=44.8
Q ss_pred hhhhchHHHHHhhhcCC----ccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHH
Q 007863 471 WAMQHIVPQVLEMINNP----HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 542 (587)
Q Consensus 471 ~~~~~~~~~l~~~l~~~----~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~ 542 (587)
.|.+.++..+.+.+.|. ...+|.-|++.+..+...- ....-+.+.+.+-|+.+.+|.-+.++..++.
T Consensus 687 ~fr~~iln~l~nY~~d~rGDVgs~iR~~a~klm~SfL~kD-----~~~~~~y~iR~~~dki~~lR~l~yqa~eqI~ 757 (993)
T COG5234 687 EFRKEILNVLSNYLTDTRGDVGSWIRKPAMKLMSSFLVKD-----SSGKKLYIIRQTFDKIDSLRGLAYQALEQIR 757 (993)
T ss_pred HHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhcc-----ccCCchhHHHHhhcccHHHHhhhhhhhhhee
Confidence 46677777777776654 3568888888887764310 0112236777788899999988877777664
No 212
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=95.11 E-value=2 Score=44.28 Aligned_cols=314 Identities=16% Similarity=0.137 Sum_probs=158.2
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcc-----cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--HH
Q 007863 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--EL 315 (587)
Q Consensus 243 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~ 315 (587)
+|-...++...++.++..|+..+..++.. ....+ -.-++.++.++.....+|+..|+.+|.++.-.-.. ..
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfg--d~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFG--DNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhh--hHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 34445556677777777777777766642 11111 12477888888888889999999888887542211 10
Q ss_pred ---HHHhHHHHHhHhcCC-CcHHHHHHHHHHHHhhhhh--hchHHHHHhHHHHHHHh-c------CCC-------ChHHH
Q 007863 316 ---AIQHILPCVKELSSD-SSQHVRSALATVIMGMAPI--LGKDATIEQLLPIFLSL-L------KDE-------FPDVR 375 (587)
Q Consensus 316 ---~~~~~~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~-l------~d~-------~~~vr 375 (587)
....-+|.+..++.. .+..||..+...+..+... +... ....-++.+... + .++ +.+|-
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~-ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKML-IITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHH-HHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 001234445554443 4667787777777777654 1111 111111111111 1 111 13444
Q ss_pred HHHHHHhHHhhhhhc--hh------hHhhhhHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHc
Q 007863 376 LNIISKLDQVNQVIG--ID------LLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 445 (587)
Q Consensus 376 ~~a~~~l~~i~~~~~--~~------~~~~~~~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 445 (587)
..+..+|..+...-. .+ ...+.++-.+...+. +.+...-.+++..+..++..+..+ +.+.....+
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~E-----vp~~~~~~~ 466 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAE-----VPPKYRQVL 466 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhh-----cCHhhhhHh
Confidence 455555555543211 01 112233333333332 222222233333333333222221 111111111
Q ss_pred C-------CCchHHHHHHHHHHHHHHHHh-----------------Chhh-hhhchHHHHHhhh-cCCccHHHHHHHHHH
Q 007863 446 K-------DKVYSIRDAAANNVKRLAEEF-----------------GPDW-AMQHIVPQVLEMI-NNPHYLYRMTILQAI 499 (587)
Q Consensus 446 ~-------d~~~~vr~~a~~~l~~l~~~~-----------------~~~~-~~~~~~~~l~~~l-~~~~~~~r~~a~~~l 499 (587)
. -..+. ....|++.-.+.. |.++ +...++..-..++ ...+..+-++++.+|
T Consensus 467 ~~~~~~~~~~~~~---~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaL 543 (717)
T KOG1048|consen 467 ANIARLPGVGPPA---ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGAL 543 (717)
T ss_pred hcccccccCCCcc---cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhH
Confidence 0 00011 2233333333220 1111 2233333322222 334667778888888
Q ss_pred HHhhcccChH-------H-HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH-HHHHhHHHHHHHhcCCCCc
Q 007863 500 SLLAPVMGSE-------I-TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSEDPDV 567 (587)
Q Consensus 500 ~~l~~~~~~~-------~-~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~l~~d~~~ 567 (587)
.++.-..+.. . -.+..+|.+.+++...+..|-..++.+|.++.....+. .+..+.+|-|...+-+..+
T Consensus 544 QNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~ 620 (717)
T KOG1048|consen 544 QNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGP 620 (717)
T ss_pred hhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCC
Confidence 8887533221 1 24667899999999999999999999999998766553 5556788888887766544
No 213
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=95.06 E-value=4.9 Score=41.51 Aligned_cols=370 Identities=15% Similarity=0.127 Sum_probs=185.3
Q ss_pred HHHHHHhcccCchhHHHHHHHHHHHHhcccCh---hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCc---
Q 007863 204 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--- 277 (587)
Q Consensus 204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~--- 277 (587)
+|-...++...++.++..|..-+..+.-.-.+ +...-.=++.+..++...+.+|+..|+.+|.++...-.....
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla 314 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA 314 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence 34444455566666666666555554322111 111222467778888899999999999999988743221100
Q ss_pred --ccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHh--hCHHHHHHhHHHHHhHhc-------CCC--c-----HHHHHH
Q 007863 278 --RSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRI--LNPELAIQHILPCVKELS-------SDS--S-----QHVRSA 338 (587)
Q Consensus 278 --~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~~~-------~d~--~-----~~vr~~ 338 (587)
...=+|.+.+++.. .|.+||+.....|.++... +..... ...+..+.... .++ . ..|-..
T Consensus 315 i~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n 393 (717)
T KOG1048|consen 315 IKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRN 393 (717)
T ss_pred hhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHH-HHHHHHHHHhhcccccccCCCCcccccccceeeeh
Confidence 11235666666653 5678999888888777664 222111 12222221111 111 1 122223
Q ss_pred HHHHHHhhhhhhc--h------HHHHHhHHHHHHHhcC--CCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcC
Q 007863 339 LATVIMGMAPILG--K------DATIEQLLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 408 (587)
Q Consensus 339 a~~~l~~l~~~~~--~------~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~ 408 (587)
+..+|..+...-. . +...+.++-.+...+. +.+..-...+.-.+..+.--+. .++-+.....+..
T Consensus 394 ~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~-----~Evp~~~~~~~~~ 468 (717)
T KOG1048|consen 394 VTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLE-----AEVPPKYRQVLAN 468 (717)
T ss_pred hhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhh-----hhcCHhhhhHhhc
Confidence 3334433332110 0 0112223333332222 2222222333333333322111 1122222211111
Q ss_pred CC--cHHHH--HHHHHHHHHHHh---------h--------Chh-hHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHH
Q 007863 409 RH--WRVRL--AIIEYIPLLASQ---------L--------GVG-FFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAE 465 (587)
Q Consensus 409 ~~--~~vr~--~~~~~l~~l~~~---------~--------~~~-~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~ 465 (587)
.+ ..+.. ....+++.-.+. + |.+ .+.+.++...+.++. ..+..+-++++.+|..+.-
T Consensus 469 ~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA 548 (717)
T KOG1048|consen 469 IARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTA 548 (717)
T ss_pred ccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhc
Confidence 00 00000 111111111111 0 001 123455555555544 4466788888888888765
Q ss_pred HhCh-------hh-hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh-HHHHHhHHHHHHhhcCCCCc------cH
Q 007863 466 EFGP-------DW-AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS-EITCSQLLPVVINASKDRVP------NI 530 (587)
Q Consensus 466 ~~~~-------~~-~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~~l~~l~~~l~d~~~------~v 530 (587)
..+. .. ..+..+|.+++++...+..+-.+++.++.++...... +.+.++.+|.+++.+.+..+ ++
T Consensus 549 ~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedt 628 (717)
T KOG1048|consen 549 GLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDT 628 (717)
T ss_pred cCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence 3221 11 2477899999999999988989999999999876654 34568899999999887644 66
Q ss_pred HHHHHHHHHHHHh-hhch--HHHHHhHHHHHHHhcCC-CCccHHHHHHHHHHH
Q 007863 531 KFNVAKVLQSLIP-IVDQ--SVVEKSIRPCLVELSED-PDVDVRFFATQALQS 579 (587)
Q Consensus 531 R~~a~~~l~~l~~-~~~~--~~~~~~i~~~l~~l~~d-~~~~Vr~~a~~al~~ 579 (587)
-..++.+|..+.. .+.. +.+...=++.|..+... .++.+-..|...+..
T Consensus 629 v~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~ 681 (717)
T KOG1048|consen 629 VRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDV 681 (717)
T ss_pred HHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 6677888887763 3322 23333345666664433 233455555544444
No 214
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.95 E-value=0.13 Score=42.69 Aligned_cols=131 Identities=17% Similarity=0.238 Sum_probs=82.3
Q ss_pred CchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH-----HHHHHHHHHHHh
Q 007863 97 VEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA-----LKTELRTIYRQL 171 (587)
Q Consensus 97 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~-----~~~~l~~~l~~l 171 (587)
...+.+|..+.-++.++. ...++.+.+.+..++.....+........++..+..+++..++- ..+.+.+.+..+
T Consensus 16 ~~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 457788888888888876 33345566677778877776655556666777777777766432 234566666666
Q ss_pred cC--CCCHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhcc-cCchh-HHHHHHHHHHH
Q 007863 172 CQ--DDMPMVRRSAATNLGKFAATVEA-AHLKSEIMSIFEELTQ-DDQDS-VRLLAVEGCGA 228 (587)
Q Consensus 172 ~~--~~~~~vR~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~l~~-d~~~~-vr~~a~~~l~~ 228 (587)
+. .++..+...+++.|..-+..-.. ..+.....+.+.++.+ ++++. +|..|.-+|.+
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 66 67777888888887765432211 3345566777777774 44444 66666655543
No 215
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=94.93 E-value=2.2 Score=36.81 Aligned_cols=164 Identities=15% Similarity=0.157 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccH
Q 007863 413 VRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYL 490 (587)
Q Consensus 413 vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~ 490 (587)
....++..++.+...+|... ....++..+-++-.+++...|.++-.++|..++.+|++.+.+ ++|.-.+. .+....
T Consensus 16 aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~-~lPLnl~~-~~~~~~ 93 (198)
T PF08161_consen 16 AWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS-ILPLNLDN-ADDSQP 93 (198)
T ss_pred HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH-HCCCCccC-CCcCCc
Confidence 33445555555555555321 112233334444455667788888888888888888775432 33321111 111111
Q ss_pred HHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcC------CCCccHHHHHHHHH-HHHHhhhch---------HHHHHhH
Q 007863 491 YRMTILQAISLLAPVMGSEITCSQLLPVVINASK------DRVPNIKFNVAKVL-QSLIPIVDQ---------SVVEKSI 554 (587)
Q Consensus 491 ~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~------d~~~~vR~~a~~~l-~~l~~~~~~---------~~~~~~i 554 (587)
-|.=-+-.+..-...-.-..|.++++|....+-+ .....+.....+++ .++..-++. +.| ..+
T Consensus 94 ~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F-~~~ 172 (198)
T PF08161_consen 94 GRAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESF-PSF 172 (198)
T ss_pred ccchhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHH-HHH
Confidence 2222222222222233344567777776555421 12222222223333 233222211 233 455
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHHH
Q 007863 555 RPCLVELSEDPDVDVRFFATQALQSK 580 (587)
Q Consensus 555 ~~~l~~l~~d~~~~Vr~~a~~al~~l 580 (587)
-+.|.+.+.| .++.|....+||..+
T Consensus 173 a~~L~~~L~~-~~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 173 AKLLGNALYD-QPDLRPIICQALRRL 197 (198)
T ss_pred HHHHHHHHhc-CcchHHHHHHHHHHH
Confidence 5666666666 488999999998875
No 216
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=5.3 Score=41.07 Aligned_cols=364 Identities=10% Similarity=0.019 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHHhc-----CC---CCHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHhcccCchhHHHHHHHH
Q 007863 159 ALKTELRTIYRQLC-----QD---DMPMVRRSAATNLGKFAATVEAA-----HLKSEIMSIFEELTQDDQDSVRLLAVEG 225 (587)
Q Consensus 159 ~~~~~l~~~l~~l~-----~~---~~~~vR~~a~~~l~~l~~~~~~~-----~~~~~i~~~l~~l~~d~~~~vr~~a~~~ 225 (587)
.....+++.+...+ .+ +++.-...+...+.++.+.+... .+...+++.+.-...++.-..|..|++.
T Consensus 404 ~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~ 483 (970)
T COG5656 404 ETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEF 483 (970)
T ss_pred hhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHH
Confidence 33455555555544 11 34556667778888877754431 2334455555556677777889999999
Q ss_pred HHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC-CCcccc---hHHHHHHhcCCChHHHHHHHH
Q 007863 226 CGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EPTRSD---VVPAYVRLLRDNEAEVRIAAA 301 (587)
Q Consensus 226 l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~---l~~~l~~~l~d~~~~vr~~a~ 301 (587)
+..+...++.......+.....+++++.+-.|+..|+-++..+...... +....+ .+.-+..+-++-+.++-..++
T Consensus 484 is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vM 563 (970)
T COG5656 484 ISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVM 563 (970)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHH
Confidence 9999777776666777788888888999999999999999887754321 111222 333444444555555555555
Q ss_pred HhH-HHHHHhhCHH--HHHHhHHHHHhH----hcCCC---c---HHHHHHHHHHHHhhh---hhhch-----HHHHHhHH
Q 007863 302 GKV-TKICRILNPE--LAIQHILPCVKE----LSSDS---S---QHVRSALATVIMGMA---PILGK-----DATIEQLL 360 (587)
Q Consensus 302 ~~l-~~l~~~~~~~--~~~~~~~~~l~~----~~~d~---~---~~vr~~a~~~l~~l~---~~~~~-----~~~~~~l~ 360 (587)
..+ +.+.+.+.+- ...+.+...+.+ ++..+ + ..-..+|...+..+. -.+.. ......+.
T Consensus 564 e~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~sly 643 (970)
T COG5656 564 ESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLY 643 (970)
T ss_pred HHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 543 2333333221 112333333322 22222 1 122233333333322 22221 11234566
Q ss_pred HHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhH---hhhhHHHHHHHhcCCCc-HHHHHHHHHHHHHHHhhCh-----h
Q 007863 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLGV-----G 431 (587)
Q Consensus 361 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~---~~~~~~~l~~~~~~~~~-~vr~~~~~~l~~l~~~~~~-----~ 431 (587)
|.+.-.++..-.++-..++.-+.... +...++ ...+...+.++..++.. ..-..+..++..+....+. .
T Consensus 644 pvi~Filkn~i~dfy~Ea~dildg~t--f~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~ 721 (970)
T COG5656 644 PVISFILKNEISDFYQEALDILDGYT--FMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAG 721 (970)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhh--HHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcccccccc
Confidence 76666666666666666665554322 111111 12333333444444432 2233444455555443322 2
Q ss_pred hHHHHHHHHHHHHcCCCch--HHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhh------cCCccHHHHHHHHHHHHhh
Q 007863 432 FFDDKLGALCMQWLKDKVY--SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI------NNPHYLYRMTILQAISLLA 503 (587)
Q Consensus 432 ~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l------~~~~~~~r~~a~~~l~~l~ 503 (587)
.+..-+..+....+.++.. +-+..+++.+..++-.++.+. .++.+|.+.+.. .|.....+..++..+-+-.
T Consensus 722 ~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~L-l~qy~plfi~vags~l~~~dElg~~sv~aleliinnl 800 (970)
T COG5656 722 IYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDEL-LSQYLPLFISVAGSGLKMIDELGPASVYALELIINNL 800 (970)
T ss_pred chhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchh-HHhhhHHHHHHHhhhhhccccccchhhhHHHHHHHHH
Confidence 3445567777777776655 667888888888888877753 344555444432 3334445555555443322
Q ss_pred cccChH-----HHHHhHHHHHHhhcCC
Q 007863 504 PVMGSE-----ITCSQLLPVVINASKD 525 (587)
Q Consensus 504 ~~~~~~-----~~~~~~l~~l~~~l~d 525 (587)
-.-+.+ .......+.+..+.++
T Consensus 801 i~~P~eTLqiLe~qg~l~~FF~~wf~~ 827 (970)
T COG5656 801 ILRPKETLQILEEQGYLQSFFEKWFSQ 827 (970)
T ss_pred hcChHHHHHHHHHcCcHHHHHHHHHhc
Confidence 211111 1134466777777777
No 217
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=94.87 E-value=0.11 Score=38.20 Aligned_cols=58 Identities=21% Similarity=0.389 Sum_probs=44.7
Q ss_pred CCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCC--ccHHHHHHHHHHHHhhc
Q 007863 447 DKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNP--HYLYRMTILQAISLLAP 504 (587)
Q Consensus 447 d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~--~~~~r~~a~~~l~~l~~ 504 (587)
++.|.+|+.|++.++.+++.++... ....+...+.+.+.|+ ....+..|+..+..++.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 5688999999999999999888653 4566777777777766 45678888888877753
No 218
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=94.85 E-value=3.3 Score=38.50 Aligned_cols=177 Identities=17% Similarity=0.146 Sum_probs=126.7
Q ss_pred HHHHHhcCCC-ChHHHHHHHHHhHHhhhhhchhhHhh---hhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHH
Q 007863 361 PIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQ---SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK 436 (587)
Q Consensus 361 ~~l~~~l~d~-~~~vr~~a~~~l~~i~~~~~~~~~~~---~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 436 (587)
..+.++++-. -..|...|+.....+-+.+|.+.+.+ .+.|-+..++....-.||-..+..+....-.+|. ...+.
T Consensus 57 krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~ 135 (307)
T PF04118_consen 57 KRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPC 135 (307)
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHH
Confidence 3455555443 45799999999999999999876543 3457777777788888998888888776655666 33443
Q ss_pred HHH---HHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccC------
Q 007863 437 LGA---LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG------ 507 (587)
Q Consensus 437 l~~---~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~------ 507 (587)
+-+ .++..+.|+..++-..+...+..+...+|.+.|-..+.-.+. .++.+|..|+..+..-.....
T Consensus 136 l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~~~ 210 (307)
T PF04118_consen 136 LKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDELSL 210 (307)
T ss_pred HHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCccccccccc
Confidence 333 344556889999999999999999999998865555554443 366789999988876655433
Q ss_pred h-H---H----HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHh
Q 007863 508 S-E---I----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 508 ~-~---~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~ 543 (587)
. + . -..-++..+...+.|++.-|++.++..|-.-.+
T Consensus 211 ~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P 254 (307)
T PF04118_consen 211 SSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFP 254 (307)
T ss_pred chHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence 1 0 0 023466778888999999999999998876654
No 219
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.84 E-value=0.79 Score=42.46 Aligned_cols=133 Identities=14% Similarity=0.099 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh---h-----hhchHHHHHhhhc--------CCccHHHHHHHH
Q 007863 434 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---A-----MQHIVPQVLEMIN--------NPHYLYRMTILQ 497 (587)
Q Consensus 434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~-----~~~~~~~l~~~l~--------~~~~~~r~~a~~ 497 (587)
.+.++|.++.++.|.+..+|..++.++..+........ + .+.+.+.+...+. +....+=..+..
T Consensus 117 ~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~ 196 (282)
T PF10521_consen 117 WPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYP 196 (282)
T ss_pred hhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHH
Confidence 35678888888888888999999999888887665443 2 1333334444433 344556667777
Q ss_pred HHHHhhccc---Ch---HHHHHhHH-HHHHhhcC----CCCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCC
Q 007863 498 AISLLAPVM---GS---EITCSQLL-PVVINASK----DRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSED 564 (587)
Q Consensus 498 ~l~~l~~~~---~~---~~~~~~~l-~~l~~~l~----d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d 564 (587)
++..+.... +. ......++ ..++..+. -+.+.+|...++.+..++..+|.. .+.+.++|.+.+.+.+
T Consensus 197 ~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~n 276 (282)
T PF10521_consen 197 ALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILEN 276 (282)
T ss_pred HHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Confidence 777775421 11 11122222 22333322 235889999999999999988765 5667889999988777
Q ss_pred CC
Q 007863 565 PD 566 (587)
Q Consensus 565 ~~ 566 (587)
+.
T Consensus 277 pf 278 (282)
T PF10521_consen 277 PF 278 (282)
T ss_pred CC
Confidence 65
No 220
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=94.79 E-value=3.6 Score=38.64 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcC
Q 007863 177 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ 251 (587)
Q Consensus 177 ~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~ 251 (587)
..-++-+.+.++.+.++++ ...+..+..-..++.|++..||..|+..|+.++.. +....+.+.+.++++
T Consensus 38 ~k~k~lasq~ip~~fk~fp--~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFP--SLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLN 106 (460)
T ss_pred hHHHHHHHHHHHHHHhhCc--hhhhHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHH
Confidence 4556667777777777664 35556666666777777777888888777777664 245556666666655
No 221
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=94.78 E-value=3.9 Score=38.99 Aligned_cols=185 Identities=10% Similarity=0.057 Sum_probs=110.4
Q ss_pred hHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhh------chHHHHHhHHHHHHH-hcCCCChHHHHHHHHHhHHhhhhhch
Q 007863 319 HILPCVKELSSDSSQHVRSALATVIMGMAPIL------GKDATIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGI 391 (587)
Q Consensus 319 ~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~------~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~i~~~~~~ 391 (587)
+++..+...+.+.+.....++.-+++.++..= -...+.+.++..+.+ ---|.+..++-+++++|..+.--..+
T Consensus 315 ~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n 394 (604)
T KOG4500|consen 315 QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN 394 (604)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc
Confidence 36677777777888888888888898887532 223344444444443 33456778888899999887633322
Q ss_pred h-hH-hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh---hh-HHHHHHHHHHHHcCCCchH-HHHHHHHHHHHHH
Q 007863 392 D-LL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GF-FDDKLGALCMQWLKDKVYS-IRDAAANNVKRLA 464 (587)
Q Consensus 392 ~-~~-~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~-~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~ 464 (587)
. .+ ...+...+...++...+.+....+..+..+...-.. +. -.+.++.-+..|-+.++.. |-....+.+..++
T Consensus 395 ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lI 474 (604)
T KOG4500|consen 395 KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLI 474 (604)
T ss_pred hhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHH
Confidence 2 11 123444555556666677666665555554432110 00 0245677778888888776 7777878887777
Q ss_pred HHhChhh-----hhhchHHHHHhhhcCCccHHHHHHHHHHHHhh
Q 007863 465 EEFGPDW-----AMQHIVPQVLEMINNPHYLYRMTILQAISLLA 503 (587)
Q Consensus 465 ~~~~~~~-----~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~ 503 (587)
++..... .....+..+..+++..+......|+-++..+.
T Consensus 475 kHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~ 518 (604)
T KOG4500|consen 475 KHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTE 518 (604)
T ss_pred HhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHH
Confidence 7532211 12345666677766666555556665555444
No 222
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=94.78 E-value=2.7 Score=37.09 Aligned_cols=131 Identities=17% Similarity=0.188 Sum_probs=62.8
Q ss_pred HHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCC-CchHHHHHH-HHHHHHHHHHhCCCCcccc
Q 007863 203 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMV-ANQLYELCEAVGPEPTRSD 280 (587)
Q Consensus 203 i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vR~~a-~~~l~~l~~~~~~~~~~~~ 280 (587)
....+..+..++..+.|..|+..+........ ...++.+...+.+ .+|.+--.. ...++.+... .+.
T Consensus 52 ~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~------~~~ 120 (213)
T PF08713_consen 52 LYELADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKK------HPE 120 (213)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHH------HGG
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHh------hHH
Confidence 34444555555555566666555554332211 1234444444433 345444443 3334444322 134
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhh
Q 007863 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 348 (587)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~ 348 (587)
+.+.+.+.+++++.-+|..++..+...... ...+.++..+...+.|++..||.+...+|..++.
T Consensus 121 ~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~ 184 (213)
T PF08713_consen 121 ALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGK 184 (213)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 555555666666555555555554433332 1124445555555566666666666666665553
No 223
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=94.73 E-value=3.8 Score=38.54 Aligned_cols=256 Identities=16% Similarity=0.166 Sum_probs=132.6
Q ss_pred cchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHH
Q 007863 140 TARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVR 219 (587)
Q Consensus 140 ~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr 219 (587)
..+..|..+++..++++ ++.....++--..++.|.+..||..|++.|..++.. +..+.+.+.+.++++
T Consensus 39 k~k~lasq~ip~~fk~f-p~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLn------- 106 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFKHF-PSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLN------- 106 (460)
T ss_pred HHHHHHHHHHHHHHhhC-chhhhHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHH-------
Confidence 34555677777777777 345566677778899999999999999999998874 566777777777776
Q ss_pred HHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcCCChHH
Q 007863 220 LLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDNEAE 295 (587)
Q Consensus 220 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~ 295 (587)
.+. +..+..+.. . .+..+|..+...+..=...++.+. ....++.-+...+.|-+.+
T Consensus 107 k~s---l~~Lf~~~~----------------~-~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtge 166 (460)
T KOG2213|consen 107 KAS---LTGLFGQIE----------------V-GDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGE 166 (460)
T ss_pred HHH---HHHHHhhhh----------------h-hhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHH
Confidence 111 222211111 0 133444444444332222222111 1123445555555665544
Q ss_pred HHHHHHHhHHHHHHhh---CHHHHHHhHHHHHhHh-----cCCCcHHHHHHHHHHHHhhhhhh----chHHHHHhHHHHH
Q 007863 296 VRIAAAGKVTKICRIL---NPELAIQHILPCVKEL-----SSDSSQHVRSALATVIMGMAPIL----GKDATIEQLLPIF 363 (587)
Q Consensus 296 vr~~a~~~l~~l~~~~---~~~~~~~~~~~~l~~~-----~~d~~~~vr~~a~~~l~~l~~~~----~~~~~~~~l~~~l 363 (587)
-=...+..|+.+...- |++. ..++......+ ++-++..+-.-.+.|+..-...| +...+..++-..+
T Consensus 167 ef~lfm~~L~~lk~~~~k~~~a~-lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ 245 (460)
T KOG2213|consen 167 EFTLFMDILASLKSLQTKAGEAR-LQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHI 245 (460)
T ss_pred HHHHHHHHHHhhhcccCCCCHHH-HHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhh
Confidence 4444444454443321 2221 23333333222 22234455555555555444444 3333333322222
Q ss_pred HHhcCC-CChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhc------CCCcHHHHHHHHHHHHHHHhhC
Q 007863 364 LSLLKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQLG 429 (587)
Q Consensus 364 ~~~l~d-~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~------~~~~~vr~~~~~~l~~l~~~~~ 429 (587)
+..--| ...+.+...+.+|+++++....+.. ...+|.+.+++. +..+.....-++++..+...+|
T Consensus 246 ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a-~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg 317 (460)
T KOG2213|consen 246 IPHHFDKLTEERKLDLLKALAEMSSYTTAQAA-RQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLG 317 (460)
T ss_pred cccccccchHHHHHHHHHHHHHhCccchHHHH-HHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHh
Confidence 222122 2356777888999998877644433 456677766653 2234444445555555444444
No 224
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.69 E-value=4.5 Score=39.26 Aligned_cols=270 Identities=14% Similarity=0.025 Sum_probs=133.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHhcccCc--hhHHHHHHHHHHHHhcccCh----hhhhhchHH
Q 007863 176 MPMVRRSAATNLGKFAATVEA-----AHLKSEIMSIFEELTQDDQ--DSVRLLAVEGCGALGKLLEP----QDCVAHILP 244 (587)
Q Consensus 176 ~~~vR~~a~~~l~~l~~~~~~-----~~~~~~i~~~l~~l~~d~~--~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~ 244 (587)
+..+-.+|.+.++.+...-.- .+....++......+.++. ..+......++.. +.+++ ......++.
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~ 136 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLA 136 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHH
Confidence 556777788888877643210 1222334444444443332 2333333333332 22222 122233344
Q ss_pred HHHHhcC-CCchHHHHHHHHHHHHHHHHhCCCCc--ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHH
Q 007863 245 VIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPT--RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHIL 321 (587)
Q Consensus 245 ~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 321 (587)
.+...-+ =++..+-...+.++..+....+.... ....+|.+...+-+....+|..|...+..+...++++......+
T Consensus 137 ~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~ 216 (372)
T PF12231_consen 137 ALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSV 216 (372)
T ss_pred HHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 3333332 23445555555566665554432111 12356666666666777889888888888877777764333322
Q ss_pred HHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHH
Q 007863 322 PCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401 (587)
Q Consensus 322 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~ 401 (587)
....+....+. .+-...++-+..+...-+......++...+..++++.- +..-.+....+..
T Consensus 217 ~~~~~~~~~~~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~-----------------~~~w~~~n~wL~v 278 (372)
T PF12231_consen 217 LEDLQRSLENG-KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSR-----------------LDSWEHLNEWLKV 278 (372)
T ss_pred HHHhccccccc-cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCch-----------------hhccHhHhHHHHH
Confidence 22222111222 44444444444443322222233344445555553321 1112233556677
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH-HHH-----HHHHHHHHcCCCch----HHHHHHHHHHHHHHH
Q 007863 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-DDK-----LGALCMQWLKDKVY----SIRDAAANNVKRLAE 465 (587)
Q Consensus 402 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~-~~~-----l~~~l~~~l~d~~~----~vr~~a~~~l~~l~~ 465 (587)
....++++++.+|..+..+...+......+.. .+. ..|+..+.-..... ++|..++..++.+..
T Consensus 279 ~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 279 PEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 77778888889999998888887765533221 112 23443332222233 677777777766653
No 225
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.65 E-value=2 Score=42.29 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHc----------CCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCC--ccHHHHHHHHHH
Q 007863 434 DDKLGALCMQWL----------KDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNP--HYLYRMTILQAI 499 (587)
Q Consensus 434 ~~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~--~~~~r~~a~~~l 499 (587)
...++|.++.++ .|+.|.+|.-|+..+..+++.++... ....++..+.+.+.|+ .+.....++..+
T Consensus 286 lh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL 365 (576)
T KOG2549|consen 286 LHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGL 365 (576)
T ss_pred HHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHH
Confidence 345566666553 46789999999999999999888764 3355666666666665 577788888888
Q ss_pred HHhhc
Q 007863 500 SLLAP 504 (587)
Q Consensus 500 ~~l~~ 504 (587)
..++.
T Consensus 366 ~~lg~ 370 (576)
T KOG2549|consen 366 SELGH 370 (576)
T ss_pred HHhhh
Confidence 88775
No 226
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.62 E-value=15 Score=45.10 Aligned_cols=152 Identities=14% Similarity=0.109 Sum_probs=101.2
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH----hChhh------hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhc
Q 007863 435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEE----FGPDW------AMQHIVPQVLEMINNPHYLYRMTILQAISLLAP 504 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~----~~~~~------~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~ 504 (587)
..+++.+...+...+.+++..+..++..+... +|... +.+.+++.+..+-.++.|.-|.+++..|+.+..
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 45688888889999999999999999887653 33221 336677777777788999999999999999888
Q ss_pred ccChHHH---HHhHHHHHHhhcCCCCcc--------HHHHHHHHHHHHHhhhchH----HHHHhHHHHHHHhcCCCCccH
Q 007863 505 VMGSEIT---CSQLLPVVINASKDRVPN--------IKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDV 569 (587)
Q Consensus 505 ~~~~~~~---~~~~l~~l~~~l~d~~~~--------vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~~~~V 569 (587)
.+...+. ...++..+...+.|...+ ++......+..+......+ .....++..+..-+.+++..|
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 7775432 334444444455554222 3333333333333322221 233344555555567888899
Q ss_pred HHHHHHHHHHHHHHhhc
Q 007863 570 RFFATQALQSKDQVMMS 586 (587)
Q Consensus 570 r~~a~~al~~l~~~~~~ 586 (587)
|..+.+.|..+++..|.
T Consensus 1143 R~~~~~~L~~i~~~s~~ 1159 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGK 1159 (3550)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999988764
No 227
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=94.52 E-value=2.6 Score=36.35 Aligned_cols=70 Identities=14% Similarity=0.188 Sum_probs=38.7
Q ss_pred HhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHH
Q 007863 287 RLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI 356 (587)
Q Consensus 287 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 356 (587)
.+++-.....-..++..++.+...+|.. .....++..+.++-.+++...|..+=.+++.....+|++.+.
T Consensus 7 ~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL 78 (198)
T PF08161_consen 7 SLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVL 78 (198)
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHH
Confidence 3333334444455555555555555543 233444445555555666666777777777777777766554
No 228
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.47 E-value=5.1 Score=38.90 Aligned_cols=263 Identities=13% Similarity=0.091 Sum_probs=125.9
Q ss_pred hHHHHHHHHHhHHHHHHh------hCHHHHHHhHHHHHhHhcCCC--cHHHHHHHHHHHHh--hhhhhchHHHHHhHHHH
Q 007863 293 EAEVRIAAAGKVTKICRI------LNPELAIQHILPCVKELSSDS--SQHVRSALATVIMG--MAPILGKDATIEQLLPI 362 (587)
Q Consensus 293 ~~~vr~~a~~~l~~l~~~------~~~~~~~~~~~~~l~~~~~d~--~~~vr~~a~~~l~~--l~~~~~~~~~~~~l~~~ 362 (587)
+.++-..|++.++.+... ++.+. ...++......+.++ +..+......++.. +...+-.....+.++..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~-~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDF-ASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 567888888888887653 22222 122333333444333 23333333333322 11111111122333333
Q ss_pred HHHhcC-CCChHHHHHHHHHhHHhhhhhchh--hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHH-
Q 007863 363 FLSLLK-DEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG- 438 (587)
Q Consensus 363 l~~~l~-d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~- 438 (587)
+...-+ =.+..+-...+..+.++....... ......+|.+...+-+....+|..+......+...++++......+
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~ 217 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVL 217 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 333322 234455555566666655443321 1123455666555556666777776666666655555432222111
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcc-----cChHHHHH
Q 007863 439 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV-----MGSEITCS 513 (587)
Q Consensus 439 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~-----~~~~~~~~ 513 (587)
+.+...+.+. .+. +.+.+.+.+++.+++... .+.+.-+.+... +....+.+
T Consensus 218 ~~~~~~~~~~--~~~--------------------~~~~~~L~~mi~~~~~~~--~a~~iW~~~i~LL~~~~~~~w~~~n 273 (372)
T PF12231_consen 218 EDLQRSLENG--KLI--------------------QLYCERLKEMIKSKDEYK--LAMQIWSVVILLLGSSRLDSWEHLN 273 (372)
T ss_pred HHhccccccc--cHH--------------------HHHHHHHHHHHhCcCCcc--hHHHHHHHHHHHhCCchhhccHhHh
Confidence 1111111111 222 233444444444421110 111111111111 22234577
Q ss_pred hHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH-----HHHH-hHHHHHHHhcCCCCc----cHHHHHHHHHHHH
Q 007863 514 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-----VVEK-SIRPCLVELSEDPDV----DVRFFATQALQSK 580 (587)
Q Consensus 514 ~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~-----~~~~-~i~~~l~~l~~d~~~----~Vr~~a~~al~~l 580 (587)
..+.....+++++++.+|..|..+...++-....+ .... -..|....+-..... .++..+...+..+
T Consensus 274 ~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~l 350 (372)
T PF12231_consen 274 EWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNL 350 (372)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhch
Confidence 88888889999999999999999999887654332 2222 234555555444444 6777776666544
No 229
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=94.41 E-value=0.72 Score=40.78 Aligned_cols=132 Identities=16% Similarity=0.133 Sum_probs=75.1
Q ss_pred hhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcC-CCCHHHHHHH-HHHHHHHHHHHhhhhhHHH
Q 007863 125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQ-DDMPMVRRSA-ATNLGKFAATVEAAHLKSE 202 (587)
Q Consensus 125 ~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~-~~~~~vR~~a-~~~l~~l~~~~~~~~~~~~ 202 (587)
....++.++-.++....+..|+.++.......+. ..++.+...+. -+++.+-... ...++.+.... +.
T Consensus 51 ~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~----~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~~ 120 (213)
T PF08713_consen 51 ELYELADELWESGYREERYLALLILDKRRKKLTE----EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------PE 120 (213)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--H----HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------GG
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhH----HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------HH
Confidence 3344555556666666666666655443332222 23444444433 2455555544 33344443221 44
Q ss_pred HHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 007863 203 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (587)
Q Consensus 203 i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~ 270 (587)
..+.+.+.++++++-+|+.++.++...... ...+.++..+.....|++..||.+...+|..++.
T Consensus 121 ~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~ 184 (213)
T PF08713_consen 121 ALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGK 184 (213)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 666777778888887887777665444333 2455677777777788888888888888777654
No 230
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.40 E-value=7.8 Score=40.73 Aligned_cols=360 Identities=11% Similarity=0.065 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCc-----hhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcC--
Q 007863 179 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQ-----DSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ-- 251 (587)
Q Consensus 179 vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-- 251 (587)
-|+.....+....+.++ +...+.+...+.+++.+.+ ...-.+++.++..++..++.. ...-+|.+.+.+.
T Consensus 440 YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t--~~~~i~rl~~~~asi 516 (982)
T KOG2022|consen 440 YRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGET--ESTWIPRLFETSASI 516 (982)
T ss_pred HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcc--hhHHHHHHHHhcccc
Confidence 56666677666666666 3555666666777766554 445567777888888888763 2223444444332
Q ss_pred ---CCchHHHHHHHHHHHHHHHHhCCCC-cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHh
Q 007863 252 ---DKSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVK 325 (587)
Q Consensus 252 ---d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~ 325 (587)
-.++..-..+...+|..+..+++.. ..+..+|.+.+.++.+.. -..+...+..+++.+..+ .+...++....
T Consensus 517 k~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~--s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~ 594 (982)
T KOG2022|consen 517 KLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKE--SEQAISTLKTLCETCPESLDPYADQFSAVCY 594 (982)
T ss_pred ccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchH--HHHHHHHHHHHHHhhhhhCchHHHHHHHHHH
Confidence 2378888889999999998887643 344578888888875443 334555588888866544 33344444444
Q ss_pred HhcCCC--cHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhc-------CC--CChHHHHHHHHH---hHHhhhhh-c
Q 007863 326 ELSSDS--SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL-------KD--EFPDVRLNIISK---LDQVNQVI-G 390 (587)
Q Consensus 326 ~~~~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-------~d--~~~~vr~~a~~~---l~~i~~~~-~ 390 (587)
..+... ....|..+.+++|.+.....++....++...+..++ .. +.++-+...+-. +..+...+ +
T Consensus 595 e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~ 674 (982)
T KOG2022|consen 595 EVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLIN 674 (982)
T ss_pred HHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 444332 357888889999988877765554444333322221 11 122222222222 22222111 0
Q ss_pred ---------------------hhhHhhhhHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHH
Q 007863 391 ---------------------IDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQW 444 (587)
Q Consensus 391 ---------------------~~~~~~~~~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~ 444 (587)
.-.+.+.++|.+.+.+. -.+..+-..++.....-.+..+.. ...+.+.+.+.++
T Consensus 675 ~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~ 754 (982)
T KOG2022|consen 675 KKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRF 754 (982)
T ss_pred CCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHh
Confidence 01234556677666543 233444444444333322333333 1234555555554
Q ss_pred cCCCchHHHHHHHHHHHHHH-HHhChhhh-------hhchHHHHHhhhc----CCccHHHHHHHHHHHHhhcccCh----
Q 007863 445 LKDKVYSIRDAAANNVKRLA-EEFGPDWA-------MQHIVPQVLEMIN----NPHYLYRMTILQAISLLAPVMGS---- 508 (587)
Q Consensus 445 l~d~~~~vr~~a~~~l~~l~-~~~~~~~~-------~~~~~~~l~~~l~----~~~~~~r~~a~~~l~~l~~~~~~---- 508 (587)
...+... ++.....+. ..++.+.. ....+...+.+.. .++...-...+.++..+.+..+.
T Consensus 755 ~~~~~a~----tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~ 830 (982)
T KOG2022|consen 755 LTSCLAV----TLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEP 830 (982)
T ss_pred ccchHHH----HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCcccc
Confidence 4332211 111111111 11111110 0111111111111 22444555666666666654321
Q ss_pred --HHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch
Q 007863 509 --EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (587)
Q Consensus 509 --~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~ 547 (587)
..+..-+++....+++.+.+-.-.++++.+..+...-.+
T Consensus 831 ~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s 871 (982)
T KOG2022|consen 831 SMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYATS 871 (982)
T ss_pred chHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhccc
Confidence 125566777888889988877777888888877665444
No 231
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.38 E-value=2.7 Score=37.49 Aligned_cols=148 Identities=16% Similarity=0.179 Sum_probs=77.8
Q ss_pred cHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCCcchHhhhhhHHHhhhcCchhH
Q 007863 22 DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETC 101 (587)
Q Consensus 22 d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 101 (587)
+++.|..|+..|+.- ....+++-|.++.+ ..+...+...+-...+.+.... +. ....
T Consensus 8 ~~~~Re~Al~eLsk~------r~~~~~La~~LW~s----~G~i~~LLqEIisiYp~l~~~~--------Lt-----~~~s 64 (262)
T PF04078_consen 8 NPETRENALLELSKK------RESFPDLAPLLWHS----FGTIAALLQEIISIYPALSPPN--------LT-----ARQS 64 (262)
T ss_dssp SHHHHHHHHHHHHHT------CCC-TTHHHHHHTS----TTHHHHHHHHHHGGGGGTTTT----------------HHHH
T ss_pred CcchHHHHHHHHHHh------hhcccchhHHHHcC----CChHHHHHHHHHHHcccCCCcc--------cC-----HHHH
Confidence 566799998777543 12346677777763 3344444444444444333111 10 0111
Q ss_pred HHH-HHHHHHHHHHhhcC------hhhHhhhhHHHHHHhhcCC-CCcchhhHHhhhhhhccCCCHHHH-----HHHHHHH
Q 007863 102 VRD-KAVESLCRIGSQMR------EQDVVEHFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEALK-----TELRTIY 168 (587)
Q Consensus 102 vr~-~a~~~l~~l~~~~~------~~~~~~~ll~~~~~l~~~~-~~~~r~~a~~l~~~~~~~~~~~~~-----~~l~~~l 168 (587)
.|- .|...+..++.+-. ..++--++.|++....+.. ....|..+.+.++.+.+.-+++.. .+++|++
T Consensus 65 nRVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplc 144 (262)
T PF04078_consen 65 NRVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLC 144 (262)
T ss_dssp HHHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHH
Confidence 121 22223333333211 1123456788886544433 355788889999998886666544 3677888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHH
Q 007863 169 RQLCQDDMPMVRRSAATNLGKFAA 192 (587)
Q Consensus 169 ~~l~~~~~~~vR~~a~~~l~~l~~ 192 (587)
...++.++...|..|...+.++..
T Consensus 145 Lr~me~GselSKtvAtfIlqKIL~ 168 (262)
T PF04078_consen 145 LRIMEFGSELSKTVATFILQKILL 168 (262)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHc
Confidence 888888877777777777666554
No 232
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.29 E-value=7.7 Score=40.23 Aligned_cols=150 Identities=16% Similarity=0.067 Sum_probs=93.7
Q ss_pred cccHHHHHHHhcCc-cHHHHHHHhhcHHHHHHHhChhhhhhhhcccccccc-C-CchHHHHHHHHHhcccccCcC-----
Q 007863 8 LYPIAVLIDELKND-DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-D-DDDEVLLAMAEELGVFIPYVG----- 79 (587)
Q Consensus 8 ~~~~~~l~~~l~s~-d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~-~~~~v~~~~~~~l~~~~~~~~----- 79 (587)
.++|+.|++++.+. =.+-|+.|++.|..+++.+..+..-.-+-|++..+. | .+++....+.+.+..+...-.
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~ 100 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVM 100 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhc
Confidence 45799999999964 779999999999999887654433333334443322 2 245565555555543322110
Q ss_pred -Ccc--------------hHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhH-----hhhhHHHHHHhhcCCCC
Q 007863 80 -GLE--------------YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDV-----VEHFIPLVKRLAAGEWF 139 (587)
Q Consensus 80 -~~~--------------~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~ll~~~~~l~~~~~~ 139 (587)
+.. ..+..+.++...+...|..||..+++.+..+.+.-+.+.- .+.-+.-++.+..|...
T Consensus 101 dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE 180 (970)
T KOG0946|consen 101 DDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSRE 180 (970)
T ss_pred ccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhh
Confidence 000 1234445666666778999999999999999988776421 11122334555666667
Q ss_pred cchhhHHhhhhhhccCCC
Q 007863 140 TARVSSCGLFHVAYPSAP 157 (587)
Q Consensus 140 ~~r~~a~~l~~~~~~~~~ 157 (587)
.+|..++.++..+.+..+
T Consensus 181 ~IRNe~iLlL~eL~k~n~ 198 (970)
T KOG0946|consen 181 PIRNEAILLLSELVKDNS 198 (970)
T ss_pred hhchhHHHHHHHHHccCc
Confidence 778888777766665554
No 233
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.22 E-value=0.47 Score=46.43 Aligned_cols=140 Identities=14% Similarity=0.203 Sum_probs=76.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCch-hHHHHHHHHHHHHhc---ccC----
Q 007863 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQD-SVRLLAVEGCGALGK---LLE---- 234 (587)
Q Consensus 163 ~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~-~vr~~a~~~l~~l~~---~~~---- 234 (587)
.++.-+...+.+.++..|+.|++.|.. +.-...++|.|..++.+.-. ++-....+.|..+.. .+-
T Consensus 207 lYy~~It~a~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~ 279 (576)
T KOG2549|consen 207 LYYKEITEACTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPN 279 (576)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCc
Confidence 344444455556788999998888764 23345677777776665421 111112222222211 111
Q ss_pred --hhhhhhchHHHHHHhc----------CCCchHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCC--hHHHHH
Q 007863 235 --PQDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDN--EAEVRI 298 (587)
Q Consensus 235 --~~~~~~~l~~~l~~~~----------~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~--~~~vr~ 298 (587)
-+.+...++|.++.++ .|..|.+|..|+..+..++..++... ....+...+.+.+.|+ .+....
T Consensus 280 i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 280 IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhh
Confidence 1345566677666554 24567777777777777777665422 1223444555555443 355666
Q ss_pred HHHHhHHHHHH
Q 007863 299 AAAGKVTKICR 309 (587)
Q Consensus 299 ~a~~~l~~l~~ 309 (587)
.++..|..++.
T Consensus 360 Gai~gL~~lg~ 370 (576)
T KOG2549|consen 360 GAIAGLSELGH 370 (576)
T ss_pred hHHHHHHHhhh
Confidence 66666666654
No 234
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=4.4 Score=44.74 Aligned_cols=217 Identities=15% Similarity=0.177 Sum_probs=126.9
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHhcccC---chhHHHHHHHHHHHHhcccCh---hhhhhc
Q 007863 170 QLCQDDMPMVRRSAATNLGKFAATVEAAH--LKSEIMSIFEELTQDD---QDSVRLLAVEGCGALGKLLEP---QDCVAH 241 (587)
Q Consensus 170 ~l~~~~~~~vR~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~l~~d~---~~~vr~~a~~~l~~l~~~~~~---~~~~~~ 241 (587)
..+..+--+||....+++-.+.+..++-. -++.+.+.+....... ...+-+.+-.++.-+.+.+-+ ......
T Consensus 849 ~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~ 928 (1610)
T KOG1848|consen 849 SDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD 928 (1610)
T ss_pred HHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence 44556667788888888888888776521 1555666655444322 233444455555555443321 223445
Q ss_pred hHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCC-------C----------------------CcccchHHHHHHhcCC
Q 007863 242 ILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP-------E----------------------PTRSDVVPAYVRLLRD 291 (587)
Q Consensus 242 l~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~-------~----------------------~~~~~l~~~l~~~l~d 291 (587)
+++.+..... ..+-.+-..|+..+..+...+.. + ..+-.++..+..++.|
T Consensus 929 lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~d 1008 (1610)
T KOG1848|consen 929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCED 1008 (1610)
T ss_pred HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhcc
Confidence 5555555443 23444555555555554443221 0 0011256667778899
Q ss_pred ChHHHHHHHHHhHHHHHHhh----CHHHHHHhHHHHHhHhcCC------CcH---HH----HHHHHHHHHhhhhhhchH-
Q 007863 292 NEAEVRIAAAGKVTKICRIL----NPELAIQHILPCVKELSSD------SSQ---HV----RSALATVIMGMAPILGKD- 353 (587)
Q Consensus 292 ~~~~vr~~a~~~l~~l~~~~----~~~~~~~~~~~~l~~~~~d------~~~---~v----r~~a~~~l~~l~~~~~~~- 353 (587)
+-.+||..|++.+-++...- ++..|..-++..+..++.. ++| .. -.+.+-.++.+++.+...
T Consensus 1009 sr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~f 1088 (1610)
T KOG1848|consen 1009 SRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENF 1088 (1610)
T ss_pred chHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999998887654 4444545555555555541 111 11 233455556666555422
Q ss_pred ----------HHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhh
Q 007863 354 ----------ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386 (587)
Q Consensus 354 ----------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~ 386 (587)
..-+.++.++..+..+.++++..+++.++..+.
T Consensus 1089 k~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1089 KLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 122567778888889999999999999988765
No 235
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.11 E-value=5.4 Score=37.74 Aligned_cols=61 Identities=8% Similarity=-0.033 Sum_probs=47.3
Q ss_pred CCcHHHHHHHHHHHHHHHhhChhh------HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCh
Q 007863 409 RHWRVRLAIIEYIPLLASQLGVGF------FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP 469 (587)
Q Consensus 409 ~~~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 469 (587)
..|+.|....+.+..+.+...... ....++..+...++++..+|-..+++++..+...+..
T Consensus 132 ~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 132 EYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 458999999999988887643222 1244667777788999999999999999999887655
No 236
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.10 E-value=4.3 Score=36.60 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHc-----C-C----CchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCC--ccHHHHHHHHH
Q 007863 433 FDDKLGALCMQWL-----K-D----KVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNP--HYLYRMTILQA 498 (587)
Q Consensus 433 ~~~~l~~~l~~~l-----~-d----~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~--~~~~r~~a~~~ 498 (587)
+...++|.++.++ . + +...+|..|+..++..++.|+..+ ....+..++.+..-|. .+.....|+++
T Consensus 274 Y~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkg 353 (450)
T COG5095 274 YLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKG 353 (450)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhh
Confidence 3455666666654 1 1 234699999999999999998764 2345555555543333 35567788888
Q ss_pred HHHhhc
Q 007863 499 ISLLAP 504 (587)
Q Consensus 499 l~~l~~ 504 (587)
+..+..
T Consensus 354 ls~l~k 359 (450)
T COG5095 354 LSILSK 359 (450)
T ss_pred hhhhch
Confidence 877764
No 237
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=12 Score=42.32 Aligned_cols=234 Identities=13% Similarity=0.144 Sum_probs=114.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHhCCCCcc---cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHh
Q 007863 251 QDKSWRVRYMVANQLYELCEAVGPEPTR---SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVK 325 (587)
Q Consensus 251 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~ 325 (587)
.-.++..|..|.+.++.+......+... +.....+.++..|.+..||......+..+...++.. ++.+.++|...
T Consensus 51 ~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl 130 (1312)
T KOG0803|consen 51 LKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWL 130 (1312)
T ss_pred hccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhh
Confidence 3445555666666666555443322111 122333445556666666666666666666655443 34455555554
Q ss_pred HhcCCCcHHHHHHHHHHHHhhhhhhchH----HHHHhHHHHHHHhc--------CC-----------CChHHHHHHHHHh
Q 007863 326 ELSSDSSQHVRSALATVIMGMAPILGKD----ATIEQLLPIFLSLL--------KD-----------EFPDVRLNIISKL 382 (587)
Q Consensus 326 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l--------~d-----------~~~~vr~~a~~~l 382 (587)
-...|....|-.+|...+......-... .+.+.+.+++.+.+ .| ....|...++.++
T Consensus 131 ~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ssLl~l 210 (1312)
T KOG0803|consen 131 GGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISSSLLLL 210 (1312)
T ss_pred heecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHHHHHHH
Confidence 4445555555555554444332210000 01122222222221 11 1123334444555
Q ss_pred HHhhhhhchhhHhhh---------hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHHcCCCch
Q 007863 383 DQVNQVIGIDLLSQS---------LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVY 450 (587)
Q Consensus 383 ~~i~~~~~~~~~~~~---------~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~ 450 (587)
..+....|.+.-... --..+-.+.+++.+.+|.+..+.+..+.+.+..- .-...+.+.+.....+.+
T Consensus 211 ~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~d- 289 (1312)
T KOG0803|consen 211 LKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSLD- 289 (1312)
T ss_pred HHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccccccc-
Confidence 555544443321111 1233445678889999999999888887765432 123566777777776665
Q ss_pred HHHHHHHHHHHHHHHHhChhh------hhhchHHHHHhhhc
Q 007863 451 SIRDAAANNVKRLAEEFGPDW------AMQHIVPQVLEMIN 485 (587)
Q Consensus 451 ~vr~~a~~~l~~l~~~~~~~~------~~~~~~~~l~~~l~ 485 (587)
-|--.....+..+...+...+ ....++|.+.+++.
T Consensus 290 ~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 290 HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 333334444443334444333 23567777777655
No 238
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.05 E-value=4.6 Score=36.76 Aligned_cols=59 Identities=15% Similarity=0.123 Sum_probs=34.0
Q ss_pred CCCchHHHHHHHHHHHHHHHH-hChhhhh-hchHHHHHhhh-cCCccHHHHHHHHHHHHhhc
Q 007863 446 KDKVYSIRDAAANNVKRLAEE-FGPDWAM-QHIVPQVLEMI-NNPHYLYRMTILQAISLLAP 504 (587)
Q Consensus 446 ~d~~~~vr~~a~~~l~~l~~~-~~~~~~~-~~~~~~l~~~l-~~~~~~~r~~a~~~l~~l~~ 504 (587)
+++++.+|...+++|-.++.. -|.+.+. ..+.|.+.++. +.++..+|.++-.....+..
T Consensus 254 RepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 254 REPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred CCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 367788888888888777653 3333333 44555555542 33456666666555544443
No 239
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=93.99 E-value=2.2 Score=39.59 Aligned_cols=38 Identities=11% Similarity=0.032 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh
Q 007863 198 HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 235 (587)
Q Consensus 198 ~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (587)
..++.++|.+..++.|..+.+|..++.++..+....+.
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~ 152 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPA 152 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCCh
Confidence 34445555555555555555666666666555554443
No 240
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.86 E-value=1.1 Score=38.57 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=39.3
Q ss_pred hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhc
Q 007863 474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~ 546 (587)
+..++.+.+...+++..+|..|+..+..+.+.-=. .-...+|.+..+.+|+++.+|..|...+..+.++.+
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv--nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLV--NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC--ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 34555555555556666666666666555541100 013456666666666666666666666666655543
No 241
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=93.80 E-value=8.1 Score=38.71 Aligned_cols=146 Identities=10% Similarity=-0.047 Sum_probs=98.7
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH----HH
Q 007863 436 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE----IT 511 (587)
Q Consensus 436 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~----~~ 511 (587)
.....+.....|-++.+|..+...++..+..+..-++.-..+...--++.|.+..+|....+.+..+....+.. .+
T Consensus 275 icdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f 354 (740)
T COG5537 275 ICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRF 354 (740)
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34455666778888899999999998888766555444444545555678888899999999888887644322 35
Q ss_pred HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHh
Q 007863 512 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 584 (587)
Q Consensus 512 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~ 584 (587)
.+++...++.++.-...-||..+++.+..+....- ....-.-.+..+.-|-.|+-|....+++..+++..
T Consensus 355 ~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~lg~---L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~ 424 (740)
T COG5537 355 VERFKDRILEFLRTDSDCVRICSIKSLCYLRILGV---LSSSEILIVSSCMLDIIPDSRENIVESVESICKID 424 (740)
T ss_pred HHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhcc---cchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence 66666666666543333399999999887754321 11223344555677888887777888888887764
No 242
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=93.65 E-value=7.2 Score=37.66 Aligned_cols=211 Identities=14% Similarity=0.037 Sum_probs=120.3
Q ss_pred hcCCCChHHHHHHHHHhHHhhhhhch-hhHhhhhHHHHH--HHhcC-CCcHHHHHHHHHHHHHHHhh-ChhhHHHHHHHH
Q 007863 366 LLKDEFPDVRLNIISKLDQVNQVIGI-DLLSQSLLPAIV--ELAED-RHWRVRLAIIEYIPLLASQL-GVGFFDDKLGAL 440 (587)
Q Consensus 366 ~l~d~~~~vr~~a~~~l~~i~~~~~~-~~~~~~~~~~l~--~~~~~-~~~~vr~~~~~~l~~l~~~~-~~~~~~~~l~~~ 440 (587)
++.++ .+||.++.+.+..++..... ..+.+.-++.+. .+..+ ++..-|..|++.+..+.+.- |.+.+...++..
T Consensus 34 lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvra 112 (371)
T PF14664_consen 34 LLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRA 112 (371)
T ss_pred HCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHH
Confidence 44454 88888888888776643211 111111122221 22233 34556888999888887753 444555677888
Q ss_pred HHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHH------HHHh
Q 007863 441 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI------TCSQ 514 (587)
Q Consensus 441 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~------~~~~ 514 (587)
+.....+++...|..++..+.+++-....-.+...-+..+.+.+.|+....-...+.++-.+...-.... -.+.
T Consensus 113 lvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~ 192 (371)
T PF14664_consen 113 LVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLES 192 (371)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHH
Confidence 8888888999999999999999886433222234445666666666665666666666666665322211 1333
Q ss_pred HHHHHHhhc---CCCCc--cHHHHHHHHHHHHHhhhch------HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 007863 515 LLPVVINAS---KDRVP--NIKFNVAKVLQSLIPIVDQ------SVVEKSIRPCLVELSEDPDVDVRFFATQALQS 579 (587)
Q Consensus 515 ~l~~l~~~l---~d~~~--~vR~~a~~~l~~l~~~~~~------~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~ 579 (587)
++..+...- ...+. +.-..+..++..+.+.... +.+ .-+..|...+.-+.+++|......+-.
T Consensus 193 l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~~~ir~~Ildll~d 266 (371)
T PF14664_consen 193 LLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPNPEIRKAILDLLFD 266 (371)
T ss_pred HHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 444443331 11122 2334556666666655432 111 234445555566777788776655543
No 243
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=93.59 E-value=1.8 Score=35.45 Aligned_cols=48 Identities=10% Similarity=0.230 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHhChhhhh-hchHHHHHhhhcCCccHHHHHHHHHH
Q 007863 450 YSIRDAAANNVKRLAEEFGPDWAM-QHIVPQVLEMINNPHYLYRMTILQAI 499 (587)
Q Consensus 450 ~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~~l~~~l~~~~~~~r~~a~~~l 499 (587)
.++...++++++.++.....+.+. ..+++.+.+.+.+++. |..|+++|
T Consensus 100 ~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 566666666666666544444322 3466666666644443 55555543
No 244
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.53 E-value=0.29 Score=42.02 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=58.5
Q ss_pred HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHH
Q 007863 512 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 583 (587)
Q Consensus 512 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~ 583 (587)
....++.+++++.+++..+|..|++.+..+...-=-.+ ...+|.|..|..|+++.+|..|.+.+..+.+.
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP--KQCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 46677888889999999999999999999976521122 36899999999999999999999999888764
No 245
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=93.51 E-value=6.9 Score=37.01 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHH-Hc---CCCchHHHHH-HHHHHHHHHHHhChhh------hhhchHHH
Q 007863 412 RVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQ-WL---KDKVYSIRDA-AANNVKRLAEEFGPDW------AMQHIVPQ 479 (587)
Q Consensus 412 ~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~-~l---~d~~~~vr~~-a~~~l~~l~~~~~~~~------~~~~~~~~ 479 (587)
.+|+..++.+..+..... .+.....++|.+.. .+ ++..+..|+. .+.+++.++..++... +.+.++..
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 356666777766665544 22223333333332 22 3344455544 3455566666666531 22344444
Q ss_pred HHhhhcC---CccHHHHHHHHHHHHhhcccChH------HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch---
Q 007863 480 VLEMINN---PHYLYRMTILQAISLLAPVMGSE------ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--- 547 (587)
Q Consensus 480 l~~~l~~---~~~~~r~~a~~~l~~l~~~~~~~------~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--- 547 (587)
...+.++ ..+..|......+..+...+-.. ...+.++..+.-.++++..+|-..++.++..+...+..
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~ 201 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNP 201 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SH
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCH
Confidence 4445543 24689999999888888754321 23566777777788999999999999999999887765
Q ss_pred ----HHHHHhHHHHHHH---hcCCCCc
Q 007863 548 ----SVVEKSIRPCLVE---LSEDPDV 567 (587)
Q Consensus 548 ----~~~~~~i~~~l~~---l~~d~~~ 567 (587)
..+....++.+.. .+.|++.
T Consensus 202 ~~~~~F~~~y~~~il~~if~vltD~~H 228 (319)
T PF08767_consen 202 EFANQFYQQYYLDILQDIFSVLTDSDH 228 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 2333444444444 3566654
No 246
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=93.42 E-value=7.6 Score=37.20 Aligned_cols=109 Identities=8% Similarity=0.068 Sum_probs=73.1
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh--hhhhchHHHHHhh-----hcCCccHHHHHHHHHHHHhhcc-c
Q 007863 435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEM-----INNPHYLYRMTILQAISLLAPV-M 506 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~-----l~~~~~~~r~~a~~~l~~l~~~-~ 506 (587)
+.++..+..++.+.+......+.-++|++++.-..- +..+.++..+.+. -.|.|-++..+++.++.++.-- .
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 457888889999999999999999999998743322 1223444444443 3456778888999999998753 2
Q ss_pred ChHHH-HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHh
Q 007863 507 GSEIT-CSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 507 ~~~~~-~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~ 543 (587)
....+ ...+...++..++-..|.|...-+.++..+..
T Consensus 394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d 431 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRD 431 (604)
T ss_pred chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHh
Confidence 22222 23345566667777777777777777666543
No 247
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.29 E-value=7.8 Score=37.00 Aligned_cols=70 Identities=20% Similarity=0.208 Sum_probs=52.8
Q ss_pred HhHHHHHHhhcCCC-CccHHHHHHHHHHHHHhhhchH--HH-HHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863 513 SQLLPVVINASKDR-VPNIKFNVAKVLQSLIPIVDQS--VV-EKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 513 ~~~l~~l~~~l~d~-~~~vR~~a~~~l~~l~~~~~~~--~~-~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~ 582 (587)
-+++..+..++... +|.+=..|+.=+++.+..++.. .+ .-.....+.++++-+|++||.+|..|+..+..
T Consensus 365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 35667777777654 4777788899999998887653 11 12356778889999999999999999988764
No 248
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=93.26 E-value=7.1 Score=36.40 Aligned_cols=140 Identities=13% Similarity=0.105 Sum_probs=82.8
Q ss_pred HHHHHhcCCC-chHHHHHHHHHHHHHHHHhCCCCcccc---hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHH
Q 007863 244 PVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEPTRSD---VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAI 317 (587)
Q Consensus 244 ~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~ 317 (587)
..+.++++-. ...|-..|.+....+...+|.+....+ ..+.+..++......||-..+..+....-.+++. ...
T Consensus 57 krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l 136 (307)
T PF04118_consen 57 KRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCL 136 (307)
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHH
Confidence 3334444332 345677777777777777775433332 3455566666666777777777777766666653 223
Q ss_pred HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhh
Q 007863 318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (587)
Q Consensus 318 ~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~ 388 (587)
+.++..+...+.|++..+-..+...+..+...++.+.+...+.-.+. .++.+|..|+..+..-...
T Consensus 137 ~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~ 202 (307)
T PF04118_consen 137 KGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPK 202 (307)
T ss_pred HHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCc
Confidence 34444455556667777777777777777777666544333222222 3577888877776654433
No 249
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=93.24 E-value=0.18 Score=30.55 Aligned_cols=30 Identities=33% Similarity=0.277 Sum_probs=21.9
Q ss_pred HhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863 552 KSIRPCLVELSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 552 ~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~ 581 (587)
...+|.|.+++.+++++|+..|..|+..++
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 456777777777777777777777777665
No 250
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=93.12 E-value=18 Score=40.71 Aligned_cols=69 Identities=16% Similarity=0.114 Sum_probs=55.7
Q ss_pred HhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH---HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863 513 SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 513 ~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~ 581 (587)
...+..++..|++.+-.|-.++|.+|.++.-.-..+ .+....++.|.+|+..++..+-+.++.||..+.
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLl 600 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLL 600 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHh
Confidence 457788888999999899999999999997654432 344567899999999999999999988887763
No 251
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=93.05 E-value=0.43 Score=35.18 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=37.6
Q ss_pred CCcHHHHHHHHHHHHhhhhhhch--HHHHHhHHHHHHHhcCCC--ChHHHHHHHHHhHHhh
Q 007863 330 DSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVN 386 (587)
Q Consensus 330 d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~i~ 386 (587)
+.+|.+|..|++.+..++..++. ......+...+.+.+.|+ ....+.+|+.+|..+.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 45677788877777777777653 234456666666666654 3456777777777663
No 252
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=92.96 E-value=8.8 Score=36.67 Aligned_cols=70 Identities=9% Similarity=0.106 Sum_probs=49.4
Q ss_pred hchHHHHHhhhcCCc-cHHHHHHHHHHHHhhcccChHHH---HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHh
Q 007863 474 QHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSEIT---CSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 474 ~~~~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~~~~---~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~ 543 (587)
-.++..+.+++..++ +.+-..|+.=|+++.+..+.... .-..-..+.+++++++++||.+|+.++..+..
T Consensus 365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 346666777665443 56667788888888877665421 12234567888999999999999999987754
No 253
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.70 E-value=5.3 Score=33.47 Aligned_cols=77 Identities=18% Similarity=0.068 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHhcc-cCchhHHHHHHHHHHHHhccc
Q 007863 158 EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKS---EIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLL 233 (587)
Q Consensus 158 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~---~i~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~ 233 (587)
....+.+...+..+++++++.-|..++..+...++..+.+.+.. ..+..+...++ ++.+.++..++.++..+....
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 44566777778888899889999999888888888764433322 22333333343 345677888888888887655
Q ss_pred C
Q 007863 234 E 234 (587)
Q Consensus 234 ~ 234 (587)
.
T Consensus 100 ~ 100 (165)
T PF08167_consen 100 R 100 (165)
T ss_pred c
Confidence 4
No 254
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=92.68 E-value=2.9 Score=33.96 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=58.0
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH----HHhHHHHHhHhcCC-CcHHHHHHHHHHHHhhhhhhch
Q 007863 278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA----IQHILPCVKELSSD-SSQHVRSALATVIMGMAPILGK 352 (587)
Q Consensus 278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~ 352 (587)
..+.+..+.+-+...++.|...|+..|..+.+.+|.... ...++..+.+++.+ .+..|+.-+...+...+..+..
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 456777888888888999999999999999998887532 34566667777766 6788888888888888776653
No 255
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.63 E-value=0.43 Score=36.72 Aligned_cols=55 Identities=16% Similarity=0.159 Sum_probs=33.6
Q ss_pred CccHHHHHHHHHHHHHhhhchH-HH--HHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863 527 VPNIKFNVAKVLQSLIPIVDQS-VV--EKSIRPCLVELSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 527 ~~~vR~~a~~~l~~l~~~~~~~-~~--~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~ 581 (587)
++.+-..||.=|+.++..++.. .+ .-.....+.+|++.+|++||..|..|+..+.
T Consensus 57 d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4555556666666666665432 11 1235667777788888888888888877664
No 256
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.54 E-value=0.76 Score=38.11 Aligned_cols=131 Identities=15% Similarity=0.173 Sum_probs=78.7
Q ss_pred CCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhccc---ChHHH-HHhHHHHHHhh
Q 007863 447 DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM---GSEIT-CSQLLPVVINA 522 (587)
Q Consensus 447 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~---~~~~~-~~~~l~~l~~~ 522 (587)
....++|..+.-++.++.+..+.+ +.+.+-+.+...+.+++..-...++.++..+.+.. +...+ .+.+++.+..+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 345678888888888776444333 45555555655665555556666777777766532 22222 34566666666
Q ss_pred cC--CCCccHHHHHHHHHHHHHhhhch-HHHHHhHHHHHHHhcC-CCCcc-HHHHHHHHHH
Q 007863 523 SK--DRVPNIKFNVAKVLQSLIPIVDQ-SVVEKSIRPCLVELSE-DPDVD-VRFFATQALQ 578 (587)
Q Consensus 523 l~--d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~l~~-d~~~~-Vr~~a~~al~ 578 (587)
.. .++..+...+++++..-+..-.- ..+.+...+.|.++.. +++.. ||..|.=+|-
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 65 56778888888888766543221 3455667788888764 44444 6766665554
No 257
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.46 E-value=23 Score=40.19 Aligned_cols=148 Identities=7% Similarity=-0.017 Sum_probs=89.7
Q ss_pred HHHHHHH-HHcCCCchHHHHHHHHHHHHHHH--HhC-hhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH
Q 007863 436 KLGALCM-QWLKDKVYSIRDAAANNVKRLAE--EFG-PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT 511 (587)
Q Consensus 436 ~l~~~l~-~~l~d~~~~vr~~a~~~l~~l~~--~~~-~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~ 511 (587)
.++..+. ....+..|.+|.+++..+..++- .++ .+.-++.+...+...++|.+..+|..|+.++..+.+.......
T Consensus 1526 e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~ 1605 (1710)
T KOG1851|consen 1526 EFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQFV 1605 (1710)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccccc
Confidence 3333343 33457789999999988876653 233 1123467888888899999889999999999998764322211
Q ss_pred HHhHHHHHHhhc-CCCCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHh
Q 007863 512 CSQLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 584 (587)
Q Consensus 512 ~~~~l~~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~ 584 (587)
....-+...... ...+...+..|+..|+.++-.++.. .+....+..+-...+++ .-++..+.+++..+....
T Consensus 1606 ~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1606 SDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred hHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHh
Confidence 111222222222 2234555667888889888776543 22222333333334555 458888888888776543
No 258
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.43 E-value=3 Score=39.48 Aligned_cols=105 Identities=22% Similarity=0.245 Sum_probs=61.4
Q ss_pred HHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHH---HHHhHHH
Q 007863 443 QWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI---TCSQLLP 517 (587)
Q Consensus 443 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~---~~~~~l~ 517 (587)
.-++..+..||..|...+..+........ -...+++.+..+..|.+..+|......+..++....++. +..-+++
T Consensus 65 ~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~ 144 (393)
T KOG2149|consen 65 SQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMP 144 (393)
T ss_pred hhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHH
Confidence 34556666666666666666655422111 123455555556666666677776666666554443332 3455566
Q ss_pred HHHhhcCCCCccHHHHHHHHHHHHHhhhch
Q 007863 518 VVINASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (587)
Q Consensus 518 ~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~ 547 (587)
.+...++.-.+.+|.-+...+..+...+++
T Consensus 145 yi~~AMThit~~i~~dslkfL~~Ll~~~~p 174 (393)
T KOG2149|consen 145 YISSAMTHITPEIQEDSLKFLSLLLERYPD 174 (393)
T ss_pred HHHHHHhhccHHHHHhhHHHHHHHHHHcCh
Confidence 666666666777777777777766666654
No 259
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.38 E-value=10 Score=35.90 Aligned_cols=169 Identities=17% Similarity=0.165 Sum_probs=88.4
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhhChhhHH--HHHHHHHHHHcC----CCchHHHHHHHHHHHHHHHHh--Chhhhhh
Q 007863 403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLK----DKVYSIRDAAANNVKRLAEEF--GPDWAMQ 474 (587)
Q Consensus 403 ~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~----d~~~~vr~~a~~~l~~l~~~~--~~~~~~~ 474 (587)
.+++..+++.++..++..+..+....+..... ..+++.+++++. .++.+++..++.+++.+.+.- ...+...
T Consensus 111 l~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~ 190 (312)
T PF03224_consen 111 LKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKS 190 (312)
T ss_dssp HHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhc
Confidence 34667778888888888888877654432222 244555555554 355667788888888887521 1222345
Q ss_pred chHHHHHhhh-----cCC--ccHHHHHHHHHHHHhhc--ccChHHHHHhHHHHHHhhcCCC-CccHHHHHHHHHHHHHhh
Q 007863 475 HIVPQVLEMI-----NNP--HYLYRMTILQAISLLAP--VMGSEITCSQLLPVVINASKDR-VPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 475 ~~~~~l~~~l-----~~~--~~~~r~~a~~~l~~l~~--~~~~~~~~~~~l~~l~~~l~d~-~~~vR~~a~~~l~~l~~~ 544 (587)
..++.+.+.+ .+. +.+....++.++=.++- ..-.......++|.+...+++. ...|-+.++.++.++...
T Consensus 191 ~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~ 270 (312)
T PF03224_consen 191 NGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSK 270 (312)
T ss_dssp HHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSS
T ss_pred CcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 5666666666 222 34444455554433331 1111112344777777776653 445555677777777765
Q ss_pred hch----HHHHHhHHHHHHHhcCC--CCccHHH
Q 007863 545 VDQ----SVVEKSIRPCLVELSED--PDVDVRF 571 (587)
Q Consensus 545 ~~~----~~~~~~i~~~l~~l~~d--~~~~Vr~ 571 (587)
-.. .-+...+++.+..+... +|+++..
T Consensus 271 ~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~e 303 (312)
T PF03224_consen 271 APKSNIELMVLCGLLKTLQNLSERKWSDEDLTE 303 (312)
T ss_dssp SSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHH
T ss_pred cHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHH
Confidence 442 23344566777766543 3555543
No 260
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=18 Score=40.96 Aligned_cols=204 Identities=18% Similarity=0.142 Sum_probs=119.1
Q ss_pred HHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhh---hhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh--hHHHHH
Q 007863 363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ---SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKL 437 (587)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~---~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l 437 (587)
+.+-+...++..+..|...+++++.....+.... .....+.++..|.+.+||......+..+...++.. .+...+
T Consensus 46 I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~l 125 (1312)
T KOG0803|consen 46 IVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSL 125 (1312)
T ss_pred HHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 3444445567777777777777776654443322 22233345567788888888888777777666543 233455
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh----hhhhchHHHHHhhh--------cC-----------CccHHHHH
Q 007863 438 GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVLEMI--------NN-----------PHYLYRMT 494 (587)
Q Consensus 438 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l--------~~-----------~~~~~r~~ 494 (587)
+|...-...|....|-.+|-..+......-... .+...+.+.+.+.+ .| ...++-..
T Consensus 126 i~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~s 205 (1312)
T KOG0803|consen 126 IPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISS 205 (1312)
T ss_pred hhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHH
Confidence 666666666777777776666655443311110 02233333333321 11 13455566
Q ss_pred HHHHHHHhhcccChHHHH-------HhH--HHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH---HHHHhHHHHHHHhc
Q 007863 495 ILQAISLLAPVMGSEITC-------SQL--LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELS 562 (587)
Q Consensus 495 a~~~l~~l~~~~~~~~~~-------~~~--l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~l~ 562 (587)
++.++..+....|.+.-. +.+ -..+.++++++++.+|.+..+.+..+++.+..- .....+.|.+....
T Consensus 206 sLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~ 285 (1312)
T KOG0803|consen 206 SLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSI 285 (1312)
T ss_pred HHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccc
Confidence 667777776554443211 111 235667889999999999999999888876542 34456677777766
Q ss_pred CCCC
Q 007863 563 EDPD 566 (587)
Q Consensus 563 ~d~~ 566 (587)
.+.+
T Consensus 286 ~~~d 289 (1312)
T KOG0803|consen 286 DSLD 289 (1312)
T ss_pred cccc
Confidence 6666
No 261
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=92.29 E-value=23 Score=39.92 Aligned_cols=70 Identities=20% Similarity=0.159 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh---hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcc
Q 007863 436 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV 505 (587)
Q Consensus 436 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~ 505 (587)
.++..+++.|++....|...+|.+|.+|......+. +....++.+.+++.+++..+-..+..++.++..+
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 467788899999999999999999998886554442 3356788888888888888888888888887753
No 262
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=92.26 E-value=3.1 Score=33.75 Aligned_cols=98 Identities=5% Similarity=0.071 Sum_probs=68.6
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHH----HHHhHHHHHH
Q 007863 445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVI 520 (587)
Q Consensus 445 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~ 520 (587)
+.+++|..-...+..+.. ...| ....+..+.+.+++++..+...|+..+..+.+++|... ....++..+.
T Consensus 17 l~~~dw~~ileicD~In~--~~~~----~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~ 90 (142)
T cd03569 17 LGEPDLASILEICDMIRS--KDVQ----PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELK 90 (142)
T ss_pred cCccCHHHHHHHHHHHhC--CCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence 345666654444444431 0111 24566677777888999999999999999999888753 2456677777
Q ss_pred hhcC-CCCccHHHHHHHHHHHHHhhhchH
Q 007863 521 NASK-DRVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 521 ~~l~-d~~~~vR~~a~~~l~~l~~~~~~~ 548 (587)
+++. ..++.||..++..+..+...+..+
T Consensus 91 ~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 91 DLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 7765 467889999999999998887654
No 263
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.82 E-value=5.4 Score=37.88 Aligned_cols=104 Identities=17% Similarity=0.096 Sum_probs=45.4
Q ss_pred cCCCChHHHHHHHHHhHHhhhhhchh--hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh---HHHHHHHHH
Q 007863 367 LKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALC 441 (587)
Q Consensus 367 l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l 441 (587)
++..+..||..+...+.......... .....+++.+..++.|.+..+|....+.+..+.....++. +..-+++.+
T Consensus 67 lkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi 146 (393)
T KOG2149|consen 67 LKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPYI 146 (393)
T ss_pred hcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHHH
Confidence 34444455555544444443331100 0112233444444455555555555555544433332222 122334444
Q ss_pred HHHcCCCchHHHHHHHHHHHHHHHHhChh
Q 007863 442 MQWLKDKVYSIRDAAANNVKRLAEEFGPD 470 (587)
Q Consensus 442 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 470 (587)
...+..-.+++|.-+...+..+...+++.
T Consensus 147 ~~AMThit~~i~~dslkfL~~Ll~~~~p~ 175 (393)
T KOG2149|consen 147 SSAMTHITPEIQEDSLKFLSLLLERYPDT 175 (393)
T ss_pred HHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence 44455555555555555555555555444
No 264
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.68 E-value=15 Score=36.43 Aligned_cols=84 Identities=14% Similarity=0.021 Sum_probs=46.7
Q ss_pred HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCCh--HHHHHHHHHhHHhhhhhchhhHh
Q 007863 318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFP--DVRLNIISKLDQVNQVIGIDLLS 395 (587)
Q Consensus 318 ~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~i~~~~~~~~~~ 395 (587)
+.++-.+.+.++.++...+.+++--++........+ .++.++..+..+.+. ++...+.-+|+.+--..-...+.
T Consensus 449 ~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~e----evl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~t 524 (881)
T COG5110 449 PPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAE----EVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLT 524 (881)
T ss_pred chHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHH----HHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHH
Confidence 445666777888888888888877776554433333 344555555555555 44444444444432222233344
Q ss_pred hhhHHHHHHH
Q 007863 396 QSLLPAIVEL 405 (587)
Q Consensus 396 ~~~~~~l~~~ 405 (587)
..++..+.+-
T Consensus 525 s~ilqtf~Er 534 (881)
T COG5110 525 SLILQTFVER 534 (881)
T ss_pred HHHHHHHHHh
Confidence 4555555443
No 265
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=91.50 E-value=11 Score=34.37 Aligned_cols=140 Identities=16% Similarity=0.142 Sum_probs=80.7
Q ss_pred HHHHHHHHcCCCc-----hHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHH-HHhhcccChHH
Q 007863 437 LGALCMQWLKDKV-----YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAI-SLLAPVMGSEI 510 (587)
Q Consensus 437 l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l-~~l~~~~~~~~ 510 (587)
.+|-++..+.++. ..++ .++..|+.+++..|... +..++..+....++-+...+..+ ..+.+.+.++
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~~~~-----La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~- 184 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQGLPN-----LARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD- 184 (262)
T ss_pred HHHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCCCcc-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch-
Confidence 3555555555555 3444 55678888886544332 22222222222222222222222 2222333222
Q ss_pred HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH-HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863 511 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 586 (587)
Q Consensus 511 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~~ 586 (587)
+...++..+..++.+..+++|..+++.|..+.+..+.. .+...++..+.+++..+-+ ..|.+.++.+..+.|+
T Consensus 185 ~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~---~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 185 HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLW---MEALEVLDEIVTRSGS 258 (262)
T ss_pred hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccH---HHHHHHHHHHHhhccc
Confidence 34567778889999999999999999999999887542 3556677777777655433 5566666666665554
No 266
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=91.41 E-value=13 Score=35.24 Aligned_cols=184 Identities=9% Similarity=0.078 Sum_probs=107.8
Q ss_pred hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-Chh------hH--H-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 007863 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVG------FF--D-DKLGALCMQWLKDKVYSIRDAAANNVKRLAE 465 (587)
Q Consensus 396 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~-~~~------~~--~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 465 (587)
..+++.+...+..=+++.|+.+...++.+.+.- +.. .+ . +.++..+.....+++... .+...+..+++
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial--~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL--NCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH--HHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc--hHHHHHHHHHh
Confidence 355666666666666777777777766665432 111 11 1 345555666665544322 22222222221
Q ss_pred Hh--ChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccC---hHH---HHHhHHHHHHhhcCCCCccHHHHHHHH
Q 007863 466 EF--GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG---SEI---TCSQLLPVVINASKDRVPNIKFNVAKV 537 (587)
Q Consensus 466 ~~--~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---~~~---~~~~~l~~l~~~l~d~~~~vR~~a~~~ 537 (587)
.- ..-.+.+..+-.+++....++..+-.-|...+..+..... .+. ....+...+..++.++++..|..+++.
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 10 0000123344456777888888888888888877664322 121 245667788889999999999999999
Q ss_pred HHHHHhhhchHH-----H-HHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863 538 LQSLIPIVDQSV-----V-EKSIRPCLVELSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 538 l~~l~~~~~~~~-----~-~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~ 581 (587)
|+.+...-.+-. + ...-+..+..++.|+..+||.-|-..++-+.
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV 282 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV 282 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 999975433211 1 1345777888899999999999988887653
No 267
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.38 E-value=23 Score=37.95 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=72.3
Q ss_pred hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH-----HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch-
Q 007863 474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE-----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ- 547 (587)
Q Consensus 474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~- 547 (587)
.+++.....++.+++..+|..++.++......+... +......|.+...+.+.+|-+-..|+.++.+++...|.
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence 456666677889999999999999998776644322 23456677888889999999999999999999888765
Q ss_pred --HHHHHhHHHHHHHhcCCCC
Q 007863 548 --SVVEKSIRPCLVELSEDPD 566 (587)
Q Consensus 548 --~~~~~~i~~~l~~l~~d~~ 566 (587)
..+.+.++|.+..++.|.-
T Consensus 882 v~sR~l~dvlP~l~~~~~~~~ 902 (1014)
T KOG4524|consen 882 VASRFLEDVLPWLKHLCQDSF 902 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 4777889999998766543
No 268
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=91.26 E-value=7 Score=31.77 Aligned_cols=75 Identities=13% Similarity=0.051 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhccc-CchhHHHHHHHHHHHHhcccCh
Q 007863 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP 235 (587)
Q Consensus 161 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~ 235 (587)
.+..+..+..-+.+.++.|...++..|..+++++|.. .....++..+..++.+ .+..|+.-..+.+...+..+..
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 3556666667778889999999999999999988862 2234456666667766 5677888888888777766553
No 269
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=91.12 E-value=20 Score=36.68 Aligned_cols=83 Identities=17% Similarity=0.191 Sum_probs=60.7
Q ss_pred HHhhcccChHHHHHhHHHHHHhhc-CCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHH----hcCCCCccHHHHHH
Q 007863 500 SLLAPVMGSEITCSQLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE----LSEDPDVDVRFFAT 574 (587)
Q Consensus 500 ~~l~~~~~~~~~~~~~l~~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~----l~~d~~~~Vr~~a~ 574 (587)
+.+.+.+.+. ....++-.+..++ ..+...+|..+++.++.+++...++...+.+.|.|.. ++.|++|-++..|.
T Consensus 466 ~~~~~~l~~~-~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~AL 544 (559)
T PF14868_consen 466 SFFIQLLDPQ-LIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHAL 544 (559)
T ss_pred HHHHHhcChH-HHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHH
Confidence 3333344443 2344555555555 5566779999999999999887776666667777666 58999999999999
Q ss_pred HHHHHHHHH
Q 007863 575 QALQSKDQV 583 (587)
Q Consensus 575 ~al~~l~~~ 583 (587)
+|++.+++.
T Consensus 545 eAF~~FAe~ 553 (559)
T PF14868_consen 545 EAFGQFAER 553 (559)
T ss_pred HHHHHHhcc
Confidence 999999874
No 270
>PF05536 Neurochondrin: Neurochondrin
Probab=91.01 E-value=21 Score=36.75 Aligned_cols=224 Identities=11% Similarity=0.107 Sum_probs=131.3
Q ss_pred HHHHhcccCchhHHHHHHHHHHHHhcccChh-----hhhhch-HHHHHHhcCC-------CchHHHHHHHHHHHHHHHHh
Q 007863 206 IFEELTQDDQDSVRLLAVEGCGALGKLLEPQ-----DCVAHI-LPVIVNFSQD-------KSWRVRYMVANQLYELCEAV 272 (587)
Q Consensus 206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~l-~~~l~~~~~d-------~~~~vR~~a~~~l~~l~~~~ 272 (587)
-...+++..+++-|..+.-.+.++.+.-+.. ...+.+ .+++.+++.. +....+..|...|..++..
T Consensus 9 ~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~- 87 (543)
T PF05536_consen 9 KCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRD- 87 (543)
T ss_pred HHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCC-
Confidence 3444555555666666666666666543321 011111 2333444433 3345677777777777651
Q ss_pred CCC---CcccchHHHHHHhcCCChH-HHHHHHHHhHHHHHHhh-CHHH-HHHhHHHHHhHhcCCCcHHHHHHHHHHHHhh
Q 007863 273 GPE---PTRSDVVPAYVRLLRDNEA-EVRIAAAGKVTKICRIL-NPEL-AIQHILPCVKELSSDSSQHVRSALATVIMGM 346 (587)
Q Consensus 273 ~~~---~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~-~~~~-~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l 346 (587)
+.- ...-.-+|.+.+.+...+. ++...|..+|..++.+- |++. .....++.+.+...+ +......+...+..+
T Consensus 88 ~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~L 166 (543)
T PF05536_consen 88 PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNL 166 (543)
T ss_pred hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHH
Confidence 111 1112368889888876666 88899999999988532 2222 223456666665555 556677777777776
Q ss_pred hhhhchH------HHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhc--------hhhHhhhhHHHHHHHhcC-CCc
Q 007863 347 APILGKD------ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--------IDLLSQSLLPAIVELAED-RHW 411 (587)
Q Consensus 347 ~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~--------~~~~~~~~~~~l~~~~~~-~~~ 411 (587)
....+.+ .....+++.+...+.......+..++..|+.+....+ ...+...+...+..++.+ ..+
T Consensus 167 ls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~ 246 (543)
T PF05536_consen 167 LSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTP 246 (543)
T ss_pred HHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCH
Confidence 6555422 1223455666666666566667777777777766552 112344555666666655 356
Q ss_pred HHHHHHHHHHHHHHHhhChh
Q 007863 412 RVRLAIIEYIPLLASQLGVG 431 (587)
Q Consensus 412 ~vr~~~~~~l~~l~~~~~~~ 431 (587)
.-|..++.....+.+.+|.+
T Consensus 247 ~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 247 SQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HHHHHHHHHHHHHHHHhChH
Confidence 77888888888877777653
No 271
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.98 E-value=3.7 Score=32.92 Aligned_cols=74 Identities=15% Similarity=0.141 Sum_probs=42.2
Q ss_pred HhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH---HHHH-hHHHHHHHhcCC---CCccHHHHHHHHHHHHHHHhh
Q 007863 513 SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEK-SIRPCLVELSED---PDVDVRFFATQALQSKDQVMM 585 (587)
Q Consensus 513 ~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~-~i~~~l~~l~~d---~~~~Vr~~a~~al~~l~~~~~ 585 (587)
...+..+.+-++++++++...|+..|..+.+..|.. .+.. .++..|.++... .++.||..+...+..++..++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 345555555566666677777777776666665542 1111 334445555443 355677777777776666655
Q ss_pred c
Q 007863 586 S 586 (587)
Q Consensus 586 ~ 586 (587)
+
T Consensus 116 ~ 116 (133)
T cd03561 116 G 116 (133)
T ss_pred C
Confidence 3
No 272
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.86 E-value=1.6 Score=33.67 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=14.7
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHH
Q 007863 243 LPVIVNFSQDKSWRVRYMVANQLYELC 269 (587)
Q Consensus 243 ~~~l~~~~~d~~~~vR~~a~~~l~~l~ 269 (587)
-..+..+++++++.||..|+.+++.+.
T Consensus 88 K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 88 KERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 344455555666666666666655543
No 273
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=90.80 E-value=0.44 Score=28.96 Aligned_cols=25 Identities=24% Similarity=0.330 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHH
Q 007863 435 DKLGALCMQWLKDKVYSIRDAAANN 459 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~ 459 (587)
+.+...+...+.|+++.||++|++.
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4567777777888888888887765
No 274
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=90.79 E-value=7.5 Score=31.32 Aligned_cols=97 Identities=14% Similarity=0.151 Sum_probs=67.8
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHH----HHHhHHHHHH
Q 007863 445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVI 520 (587)
Q Consensus 445 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~ 520 (587)
+.+++|..-...+..+.. ...| ....+..+.+.+++++..+...|+..+..+.+++|... ....++..+.
T Consensus 14 l~~~dw~~ileicD~In~--~~~~----~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~ 87 (139)
T cd03567 14 NREEDWEAIQAFCEQINK--EPEG----PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELI 87 (139)
T ss_pred CCCCCHHHHHHHHHHHHc--CCcc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHH
Confidence 446677665555555432 1111 23456667777889999999999999999999998753 2455666777
Q ss_pred hhcCC------CCccHHHHHHHHHHHHHhhhch
Q 007863 521 NASKD------RVPNIKFNVAKVLQSLIPIVDQ 547 (587)
Q Consensus 521 ~~l~d------~~~~vR~~a~~~l~~l~~~~~~ 547 (587)
+++.. .++.||..++..+..+...++.
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (139)
T cd03567 88 KLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH 120 (139)
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 77643 5789999999999999877653
No 275
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=90.77 E-value=0.45 Score=28.70 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=17.7
Q ss_pred hHHHHHHhhcCCCCccHHHHHHHHHHHHH
Q 007863 514 QLLPVVINASKDRVPNIKFNVAKVLQSLI 542 (587)
Q Consensus 514 ~~l~~l~~~l~d~~~~vR~~a~~~l~~l~ 542 (587)
..+|.+..+++++++.+|..++.+|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 45566666666666666666666666553
No 276
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=90.66 E-value=0.25 Score=30.01 Aligned_cols=21 Identities=43% Similarity=0.477 Sum_probs=9.3
Q ss_pred hHHHHHHhcCCChHHHHHHHH
Q 007863 281 VVPAYVRLLRDNEAEVRIAAA 301 (587)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~ 301 (587)
+...+...+.|+++.||++|+
T Consensus 19 v~~~i~~rl~D~s~~VR~aav 39 (42)
T PF12765_consen 19 VQSAIIRRLSDSSPSVREAAV 39 (42)
T ss_pred HHHHHHHHhcCCChHHHHHHH
Confidence 344444444444444444444
No 277
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=90.62 E-value=20 Score=36.05 Aligned_cols=142 Identities=15% Similarity=0.097 Sum_probs=92.2
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHH----HH
Q 007863 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA----TI 356 (587)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~ 356 (587)
.-..+++...|.++.+|..+...++.....++.-...-..+.+.--.+.|.+..||....+.+..++...+... +.
T Consensus 276 cdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~ 355 (740)
T COG5537 276 CDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV 355 (740)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 34566777889999999999999998877655433333345555567889999999999999998887765332 33
Q ss_pred HhHHHHHHHhc-CCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 007863 357 EQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426 (587)
Q Consensus 357 ~~l~~~l~~~l-~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~ 426 (587)
+.+...+..++ .|.+- ||..+.+.+..+....-- ...-+-.+..++-|..++-|....+.+..+++
T Consensus 356 eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~lg~L---~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 356 ERFKDRILEFLRTDSDC-VRICSIKSLCYLRILGVL---SSSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHHHHHHHHhhccch-hhHHHHHHHHHHHHhccc---chhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 44444444544 45555 999999888876543211 12234444555667666655555555555444
No 278
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=90.53 E-value=7 Score=31.70 Aligned_cols=76 Identities=13% Similarity=0.149 Sum_probs=56.2
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH----HHhHHHHHhHhcC-CCcHHHHHHHHHHHHhhhhhhch
Q 007863 278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA----IQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGK 352 (587)
Q Consensus 278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~ 352 (587)
..+.+..+.+-++..++.+...|+..|..+.+.+|.... ...++..+.+++. ..+..||..++..+...+..++.
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 456777788888888999999999999999998887522 2345555555554 46778888888888888776654
Q ss_pred H
Q 007863 353 D 353 (587)
Q Consensus 353 ~ 353 (587)
+
T Consensus 119 ~ 119 (142)
T cd03569 119 K 119 (142)
T ss_pred C
Confidence 3
No 279
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=90.21 E-value=8.7 Score=34.74 Aligned_cols=131 Identities=17% Similarity=0.201 Sum_probs=75.0
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcC------CccHHHHHHHHHHHHhhcc--cChHHHHHhHH
Q 007863 445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN------PHYLYRMTILQAISLLAPV--MGSEITCSQLL 516 (587)
Q Consensus 445 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~------~~~~~r~~a~~~l~~l~~~--~~~~~~~~~~l 516 (587)
+...+...|.+|+.+|..= -| ..+++|.+..++++ .|..+-.+.+.....+..+ +=.+++...++
T Consensus 207 ~dEs~~~~r~aAl~sLr~d---sG----lhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlm 279 (450)
T COG5095 207 LDESDEQTRDAALESLRND---SG----LHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLM 279 (450)
T ss_pred HHHHHHHHHHHHHHHhccC---cc----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHH
Confidence 4455667788887776431 11 23344444444332 1333444444444444432 22345788888
Q ss_pred HHHHhhc------CCC----CccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCCC--ccHHHHHHHHHHHHHH
Q 007863 517 PVVINAS------KDR----VPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPD--VDVRFFATQALQSKDQ 582 (587)
Q Consensus 517 ~~l~~~l------~d~----~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~--~~Vr~~a~~al~~l~~ 582 (587)
|.++.++ +++ ...+|..|+..++.++..++.. .....+...+.+..-|.. ..-...|.+++..+.+
T Consensus 280 PSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~k 359 (450)
T COG5095 280 PSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSK 359 (450)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhch
Confidence 8877664 222 2348999999999999988765 344556666666433433 3456677777766544
No 280
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.15 E-value=20 Score=35.25 Aligned_cols=143 Identities=13% Similarity=0.125 Sum_probs=79.2
Q ss_pred ChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh-hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccC
Q 007863 429 GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG 507 (587)
Q Consensus 429 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~ 507 (587)
.++.|...+++.+... ....++|...++.|+.++ |.- .+.-.+.|.+..++......+.+....+....-..++
T Consensus 233 DpQ~fAEkLfk~~~~~--~er~E~klm~~~lisRli---G~HkL~l~~fY~fl~~yl~phqrDvTqIl~~aaQa~Hd~VP 307 (616)
T KOG2229|consen 233 DPQGFAEKLFKQLLAC--KERFEVKLMLMKLISRLI---GIHKLFLFGFYPFLQRYLQPHQRDVTQILAAAAQASHDLVP 307 (616)
T ss_pred ChhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHh---hhhHHHHhhhHHHHHHHcCcchhhHHHHHHHHHHhccCCCC
Confidence 3455556666655544 345566666666666554 432 2445578888888876655555444444444333444
Q ss_pred hHHHHHhHHHHHH-hhcCCC-CccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 007863 508 SEITCSQLLPVVI-NASKDR-VPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 579 (587)
Q Consensus 508 ~~~~~~~~l~~l~-~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~ 579 (587)
++ ..+.++..+. .+.+|. .+++-...+.++.+++...+. ...+.++.-|...-...+..| ..|+.++-.
T Consensus 308 ~d-~iEpl~k~Ian~FVtD~~spEv~~vgiN~iREic~Rvpl-aMteeLLqDLa~YK~sk~K~V-~maarSLI~ 378 (616)
T KOG2229|consen 308 PD-IIEPLLKTIANNFVTDENSPEVMAVGINAIREICERVPL-AMTEELLQDLASYKTSKKKVV-MMAARSLIA 378 (616)
T ss_pred hH-HhhHHHHHHHHHhcccCCCcceeehhhhHHHHHHhhcch-hhcHHHHHHHHHHhHHHHHHH-HHHHHHHHH
Confidence 44 3444444444 455664 678888888889888887653 223445555555544444444 444444433
No 281
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=90.11 E-value=21 Score=35.41 Aligned_cols=176 Identities=13% Similarity=0.172 Sum_probs=89.3
Q ss_pred cHHHHHHHHHHHHhhhhhhc---hH---HHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHH
Q 007863 332 SQHVRSALATVIMGMAPILG---KD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 405 (587)
Q Consensus 332 ~~~vr~~a~~~l~~l~~~~~---~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~ 405 (587)
++..-....++++.+..... ++ .+.+.++|.+...|..+-.+.--.+.+-++.+.+........+.+...+..+
T Consensus 85 nP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~L 164 (435)
T PF03378_consen 85 NPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPL 164 (435)
T ss_dssp -HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHH
T ss_pred CcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 45555555566665554432 12 3456778888888876655555556666666665544222222222222223
Q ss_pred hcCCCcHHHH---HHHHHHHHHHHhhChhhH----HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh---hhhc
Q 007863 406 AEDRHWRVRL---AIIEYIPLLASQLGVGFF----DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---AMQH 475 (587)
Q Consensus 406 ~~~~~~~vr~---~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~ 475 (587)
+...-|+.|. +.++.+..+.+..+.... ...++.++.+++.++..+ ..+...|..+...+..+. +...
T Consensus 165 l~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~ 242 (435)
T PF03378_consen 165 LSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQ 242 (435)
T ss_dssp TSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHH
T ss_pred cCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 3444454332 334444444443333221 245677777888776544 557889999999888764 3344
Q ss_pred hHHHHHhhhc-CCccHHHHHHHHHHHHhhcccChH
Q 007863 476 IVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSE 509 (587)
Q Consensus 476 ~~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~ 509 (587)
++..++..++ .+....+...+..++.++-..|.+
T Consensus 243 I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~ 277 (435)
T PF03378_consen 243 IFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPD 277 (435)
T ss_dssp HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHH
Confidence 4444444443 445555556666666555444544
No 282
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=90.08 E-value=26 Score=36.43 Aligned_cols=304 Identities=13% Similarity=0.122 Sum_probs=152.2
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCc-ccchHHHHHHhcCCChHHHHHHHHHhHHHHHH-hhCHHHHHHhHHHHH---hHh-
Q 007863 254 SWRVRYMVANQLYELCEAVGPEPT-RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR-ILNPELAIQHILPCV---KEL- 327 (587)
Q Consensus 254 ~~~vR~~a~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~-~~~~~~~~~~~~~~l---~~~- 327 (587)
++.+-..+.++++.+...+.-... .+..++.+.+++. -.++|.+|+.++-++.. .+.|-... .++..+ .++
T Consensus 206 npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL-~lln~L~q~l~lf 282 (980)
T KOG2021|consen 206 NPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKL-ALLNMLNQTLELF 282 (980)
T ss_pred CchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHH-HHHHHHHHHHHHH
Confidence 777888888888887766543322 3356777777776 56899999999777654 44443211 122222 111
Q ss_pred ---cCC--CcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHH
Q 007863 328 ---SSD--SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI 402 (587)
Q Consensus 328 ---~~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l 402 (587)
..| .+..+-....+.+... |-+ ++....++.+..++.+++.+...+- ..+|.+
T Consensus 283 g~~s~dq~~d~df~e~vskLitg~----gve-----l~~i~s~lnseld~~~kqn~l~~ll-------------~~vpyl 340 (980)
T KOG2021|consen 283 GYHSADQMDDLDFWESVSKLITGF----GVE-----LTIIISQLNSELDTLYKQNVLSILL-------------EIVPYL 340 (980)
T ss_pred hhhccccccCchHHHHHHHHHhhc----cee-----eehhHhhhhhccCHHHHHHHHHHHH-------------HHHHHH
Confidence 112 2333333333333332 211 1111222223444555554443332 245555
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhhCh---------hhHHHHHHHHHHHHc------CCC----------chHHHHHHH
Q 007863 403 VELAEDRHWRVRLAIIEYIPLLASQLGV---------GFFDDKLGALCMQWL------KDK----------VYSIRDAAA 457 (587)
Q Consensus 403 ~~~~~~~~~~vr~~~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l------~d~----------~~~vr~~a~ 457 (587)
.+.+.++..++-......+......+.. ......+..++.+.- .|. ..++|..--
T Consensus 341 lq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk 420 (980)
T KOG2021|consen 341 LQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLK 420 (980)
T ss_pred HHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHH
Confidence 5665555444444444433332221110 011111222222221 111 135666554
Q ss_pred HHHHHHHHHhChhhhhhchHHHHHhh---hcCCccHHHHHHHHHHHHhhcccChHH------------HHHhHHHHHHh-
Q 007863 458 NNVKRLAEEFGPDWAMQHIVPQVLEM---INNPHYLYRMTILQAISLLAPVMGSEI------------TCSQLLPVVIN- 521 (587)
Q Consensus 458 ~~l~~l~~~~~~~~~~~~~~~~l~~~---l~~~~~~~r~~a~~~l~~l~~~~~~~~------------~~~~~l~~l~~- 521 (587)
..+..+. ...++.+...+-..+... ....+|..-+.|+..+-.+++.+..+. ....+++.+..
T Consensus 421 ~fqdti~-~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~ts 499 (980)
T KOG2021|consen 421 NFQDTIV-VIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTS 499 (980)
T ss_pred HHHHHHH-hcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHc
Confidence 4444443 345554433343333332 344578889999999988887654331 12233343332
Q ss_pred -hcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHh------cCCCCccHHHHHHHHHHHHHHHhhc
Q 007863 522 -ASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL------SEDPDVDVRFFATQALQSKDQVMMS 586 (587)
Q Consensus 522 -~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l------~~d~~~~Vr~~a~~al~~l~~~~~~ 586 (587)
.+..+++.|.....+.+.+-.+-+.. ...-.|.+... +...+.+||.+|...+.++.+.+++
T Consensus 500 qv~~h~h~lVqLlfmE~ivRY~kff~~---esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkk 568 (980)
T KOG2021|consen 500 QVLAHDHELVQLLFMELIVRYNKFFST---ESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKK 568 (980)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhc---chhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHH
Confidence 24455666666666666553333322 23345555553 3456789999999999988887764
No 283
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.90 E-value=23 Score=35.44 Aligned_cols=296 Identities=12% Similarity=0.148 Sum_probs=152.7
Q ss_pred HHHHHHHHHhcccCc---hhHHHHHHHHHHHHhc--ccChhhhhh--chHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC
Q 007863 201 SEIMSIFEELTQDDQ---DSVRLLAVEGCGALGK--LLEPQDCVA--HILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 273 (587)
Q Consensus 201 ~~i~~~l~~l~~d~~---~~vr~~a~~~l~~l~~--~~~~~~~~~--~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~ 273 (587)
..++..+..++++.+ ..+-..+.+++++-.. .++++.... .++..+...+++. ..-..|.+++..+.....
T Consensus 152 ~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~--~lhe~At~cic~ll~~~~ 229 (559)
T KOG2081|consen 152 SKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDD--ELHEEATECICALLYCSL 229 (559)
T ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccc--hhhHHHHHHHHHHHHHhh
Confidence 334444444444332 3445555666665444 344332222 2444445555532 333445555444433221
Q ss_pred C-CC---c------ccchHHHHHHh-cCCChHHHHHHHHHhHHHHHHhhCH------HHHHHhHHHHHhHhcCCCcHHHH
Q 007863 274 P-EP---T------RSDVVPAYVRL-LRDNEAEVRIAAAGKVTKICRILNP------ELAIQHILPCVKELSSDSSQHVR 336 (587)
Q Consensus 274 ~-~~---~------~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~~~~~l~~~~~d~~~~vr 336 (587)
. +. . ...+++...++ ....+.+-+.+..+.+..+++.+-. +.+ -.++..+.-....++++|-
T Consensus 230 ~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~-l~~vellLl~~~h~~~evi 308 (559)
T KOG2081|consen 230 DRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEF-LRIVELLLLVAGHNDTEVI 308 (559)
T ss_pred hhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcc-hhHHHHHHHhccCCchhhh
Confidence 1 00 0 11122222222 2334456677777778777775422 211 1233334444566777777
Q ss_pred HHHHHHHHhhhhhhch---HHHHHhHHHHHHHhc-------C---------CC---ChHHHHHHHHHhHHhhhhhchhhH
Q 007863 337 SALATVIMGMAPILGK---DATIEQLLPIFLSLL-------K---------DE---FPDVRLNIISKLDQVNQVIGIDLL 394 (587)
Q Consensus 337 ~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-------~---------d~---~~~vr~~a~~~l~~i~~~~~~~~~ 394 (587)
.........+....-. +.....+-|++.+++ . ++ ..+.|......+..+.-.+|.+.-
T Consensus 309 e~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~ 388 (559)
T KOG2081|consen 309 EASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDEC 388 (559)
T ss_pred hhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 7666666666544321 111111222222221 1 11 235677777777777777776643
Q ss_pred hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcC--CCchHHHHHHHHHHHHHHHHhChhh-
Q 007863 395 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK--DKVYSIRDAAANNVKRLAEEFGPDW- 471 (587)
Q Consensus 395 ~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~- 471 (587)
.+.+.-.+.+ .+..|+.-.+++-.+..+++.+.++ .+.++|-+++.+. +....+|..++..+|.+.+-+....
T Consensus 389 lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~--e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~ 464 (559)
T KOG2081|consen 389 LKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE--ENTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPE 464 (559)
T ss_pred HHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc--ccchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcH
Confidence 3333333222 4678999999999999998887654 3456666666553 3345599999999999988665432
Q ss_pred hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcc
Q 007863 472 AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV 505 (587)
Q Consensus 472 ~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~ 505 (587)
..+.+...+...+.... .--++..++..++..
T Consensus 465 ~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~ 496 (559)
T KOG2081|consen 465 LLEPVLRYIRQGLQLKR--LASAAALAFHRICSA 496 (559)
T ss_pred HHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHH
Confidence 23444444444454444 344455555555543
No 284
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=89.84 E-value=6.2 Score=31.97 Aligned_cols=76 Identities=11% Similarity=0.167 Sum_probs=55.3
Q ss_pred hhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH----HHhHHHHHHhhcCCC-Ccc---HHHHHHHHHHHHHhh
Q 007863 473 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASKDR-VPN---IKFNVAKVLQSLIPI 544 (587)
Q Consensus 473 ~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~~l~d~-~~~---vR~~a~~~l~~l~~~ 544 (587)
....+..+.+.+.++++.+...|+..+..+..++|.... ...++..+.+++.++ ... ||..++..+..+...
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 355677777888888999999999999999888876532 234666666655543 222 899999999988887
Q ss_pred hchH
Q 007863 545 VDQS 548 (587)
Q Consensus 545 ~~~~ 548 (587)
+...
T Consensus 120 f~~~ 123 (140)
T PF00790_consen 120 FKSD 123 (140)
T ss_dssp TTTS
T ss_pred HCCC
Confidence 7543
No 285
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=89.44 E-value=8.7 Score=30.97 Aligned_cols=95 Identities=9% Similarity=0.105 Sum_probs=62.4
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhh----hhchHHHHHh
Q 007863 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLE 482 (587)
Q Consensus 407 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~ 482 (587)
.+++|..-..++..+.. +.-| ....+..+.+-++++++.+...|+..|..+++.+|..+. ...++..+.+
T Consensus 15 ~~~dw~~ileicD~In~--~~~~----~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~k 88 (139)
T cd03567 15 REEDWEAIQAFCEQINK--EPEG----PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIK 88 (139)
T ss_pred CCCCHHHHHHHHHHHHc--CCcc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHH
Confidence 35677765555554432 1112 233455666777888888888899999999888888752 3566667777
Q ss_pred hhcC------CccHHHHHHHHHHHHhhcccC
Q 007863 483 MINN------PHYLYRMTILQAISLLAPVMG 507 (587)
Q Consensus 483 ~l~~------~~~~~r~~a~~~l~~l~~~~~ 507 (587)
++.. .+..||...+..+..-...++
T Consensus 89 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 89 LVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 6642 356788888887777766544
No 286
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=89.01 E-value=11 Score=30.56 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHhcccCc--hh--HHHHHHHHHHHHhc
Q 007863 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHL----KSEIMSIFEELTQDDQ--DS--VRLLAVEGCGALGK 231 (587)
Q Consensus 160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~l~~d~~--~~--vr~~a~~~l~~l~~ 231 (587)
..+..+..+.+-+.+++|.+...++..|..++++.|..-. ...++..+..++.+.. +. ||..+...+...+.
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 4466677777788889999999999999999998875221 2335566666555432 22 78888888887777
Q ss_pred ccCh
Q 007863 232 LLEP 235 (587)
Q Consensus 232 ~~~~ 235 (587)
.+..
T Consensus 119 ~f~~ 122 (140)
T PF00790_consen 119 AFKS 122 (140)
T ss_dssp HTTT
T ss_pred HHCC
Confidence 6644
No 287
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=88.94 E-value=15 Score=32.15 Aligned_cols=133 Identities=15% Similarity=0.131 Sum_probs=76.8
Q ss_pred hhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcC-CCC-cchhhHHhhhhhhccCCCHHHHHH
Q 007863 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAG-EWF-TARVSSCGLFHVAYPSAPEALKTE 163 (587)
Q Consensus 86 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~-~~~-~~r~~a~~l~~~~~~~~~~~~~~~ 163 (587)
....++..+..++....|..|+..+....+...++. ++.+..+... +++ .+-..+..+++.+... .+.
T Consensus 46 ~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~-----~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~-----~~~ 115 (208)
T cd07064 46 ELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPED-----LPLLEELITTKSWWDTVDSLAKVVGGILLAD-----YPE 115 (208)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHH-----HHHHHHHHcCCchHHHHHHHHHHHhHHHHhC-----Chh
Confidence 344555667777777778888777776555554432 3333333322 222 2233333333333222 123
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcc
Q 007863 164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL 232 (587)
Q Consensus 164 l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 232 (587)
+.+.+.....+++...|+.++-+.-.+.+. .-.+.+..++..+++|+..-|+++..-.|..++..
T Consensus 116 ~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~----~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 116 FEPVMDEWSTDENFWLRRTAILHQLKYKEK----TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKT 180 (208)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHc----cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence 456777888888888888777654333332 12345666777788888888888877777777665
No 288
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.92 E-value=45 Score=37.53 Aligned_cols=218 Identities=13% Similarity=0.129 Sum_probs=120.3
Q ss_pred HhcccCchhHHHHHHHHHHHHhcccChh--hhhhchHHHHHHhcCCC---chHHHHHHHHHHHHHHHHhCCCC---cccc
Q 007863 209 ELTQDDQDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDK---SWRVRYMVANQLYELCEAVGPEP---TRSD 280 (587)
Q Consensus 209 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~---~~~vR~~a~~~l~~l~~~~~~~~---~~~~ 280 (587)
.....+.-+||....+++-.+.+..++. ..+..+++.+....... ...+-+.+..+|.-+...+-+.. ....
T Consensus 849 ~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~ 928 (1610)
T KOG1848|consen 849 SDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD 928 (1610)
T ss_pred HHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence 3344556678988889988888877652 12555666665443322 34444455566655544322211 1123
Q ss_pred hHHHHHHhc-CCChHHHHHHHHHhHHHHHHhhCH-----------------------------HHHHHhHHHHHhHhcCC
Q 007863 281 VVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNP-----------------------------ELAIQHILPCVKELSSD 330 (587)
Q Consensus 281 l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~-----------------------------~~~~~~~~~~l~~~~~d 330 (587)
+++.+..+. +..|.++--.|+..+..++..+.. +...-.++..+.+++.|
T Consensus 929 lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~d 1008 (1610)
T KOG1848|consen 929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCED 1008 (1610)
T ss_pred HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhcc
Confidence 444444433 233455666666666655554322 11112245556678888
Q ss_pred CcHHHHHHHHHHHHhhhhh----hchHHHHHhHHHHHHHhcC-------CC--ChHHH----HHHHHHhHHhhhhhch--
Q 007863 331 SSQHVRSALATVIMGMAPI----LGKDATIEQLLPIFLSLLK-------DE--FPDVR----LNIISKLDQVNQVIGI-- 391 (587)
Q Consensus 331 ~~~~vr~~a~~~l~~l~~~----~~~~~~~~~l~~~l~~~l~-------d~--~~~vr----~~a~~~l~~i~~~~~~-- 391 (587)
+-..||..|++.+-++... ++...+..-+..++..+|. ++ ..+++ ...+-.++.+++.+..
T Consensus 1009 sr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~f 1088 (1610)
T KOG1848|consen 1009 SRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENF 1088 (1610)
T ss_pred chHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHH
Confidence 8899999999988777543 3443343334444444443 11 11221 1123333333333321
Q ss_pred ---------hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 007863 392 ---------DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426 (587)
Q Consensus 392 ---------~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~ 426 (587)
-...+.++..+..+..+.++.+..+++.++..+..
T Consensus 1089 k~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1089 KLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 12235677888888899999999999988877654
No 289
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=88.89 E-value=15 Score=31.90 Aligned_cols=61 Identities=23% Similarity=0.204 Sum_probs=25.7
Q ss_pred HHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 007863 206 IFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELC 269 (587)
Q Consensus 206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~ 269 (587)
.+.....+++.-+|+.+..++...... +...+.+++.+..+..|++..||.+...+|..++
T Consensus 109 ~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~ 169 (197)
T cd06561 109 LLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYG 169 (197)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443332222 1123334444444444444444444444444444
No 290
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=88.87 E-value=1.2 Score=37.02 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=43.5
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh
Q 007863 252 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL 311 (587)
Q Consensus 252 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 311 (587)
|.--.+|++|.+++..+...+........++..+...++| +.+||.-+...+..++...
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~ 96 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLA 96 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhC
Confidence 4556788888888888887665555455677888888888 7888888888888886654
No 291
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=88.63 E-value=31 Score=35.31 Aligned_cols=87 Identities=14% Similarity=0.230 Sum_probs=57.0
Q ss_pred HHHHHHHHhhChhhHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHh----hhcCCccHHHH
Q 007863 419 EYIPLLASQLGVGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE----MINNPHYLYRM 493 (587)
Q Consensus 419 ~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~----~l~~~~~~~r~ 493 (587)
..++.+.+.+.++.+.+ ++..+...+ ..+...+|-+.++.++.+.+.+-++...+.+.|.+-. ++.|++|.+++
T Consensus 463 ~l~~~~~~~l~~~~i~q-v~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q 541 (559)
T PF14868_consen 463 SLLSFFIQLLDPQLIEQ-VLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQ 541 (559)
T ss_pred HHHHHHHHhcChHHHHH-HHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHH
Confidence 33444444444444333 333334444 4455568888888888888766555455567776654 37899999999
Q ss_pred HHHHHHHHhhccc
Q 007863 494 TILQAISLLAPVM 506 (587)
Q Consensus 494 ~a~~~l~~l~~~~ 506 (587)
.|+.+++.+++.-
T Consensus 542 ~ALeAF~~FAe~T 554 (559)
T PF14868_consen 542 HALEAFGQFAERT 554 (559)
T ss_pred HHHHHHHHHhccC
Confidence 9999999998754
No 292
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=88.58 E-value=31 Score=35.31 Aligned_cols=282 Identities=11% Similarity=0.032 Sum_probs=130.4
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCc--HHHHHHHHHHHHhhhhhhchHHHH
Q 007863 279 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS--QHVRSALATVIMGMAPILGKDATI 356 (587)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~--~~vr~~a~~~l~~l~~~~~~~~~~ 356 (587)
+..+-.+...++.++..+|.+++-.|+........+.+.. .+...+.|.+ ..|...+.-+++.+.-.--.+...
T Consensus 451 dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~----lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvt 526 (878)
T KOG2005|consen 451 DPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLE----LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVT 526 (878)
T ss_pred CHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHH----HHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHH
Confidence 4466777778888888999999888887665545554433 4444444544 446655555665543211112222
Q ss_pred HhHHHHHHHhcC--CCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH-
Q 007863 357 EQLLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF- 433 (587)
Q Consensus 357 ~~l~~~l~~~l~--d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~- 433 (587)
..++..+..--. -.+...|.-+ |+--.-.+|..+..+.+...+ ..-+..+|..+--.+.. +...|....
T Consensus 527 s~ilqtlmekse~El~d~~~RFL~---LGL~llflgkqe~~d~~~e~~----~~i~~~~~~~~~~lv~~-caYaGTGnvl 598 (878)
T KOG2005|consen 527 SSILQTLMEKSETELEDQWFRFLA---LGLALLFLGKQESVDAVVETI----KAIEGPIRKHESILVKS-CAYAGTGNVL 598 (878)
T ss_pred HHHHHHHHHhhhhhhhchHHHHHH---HHHHHHHhcccchHHHHHHHH----HHhhhHHHHHHHHHHHH-hhccccCceE
Confidence 222222221111 0112233221 221122233332222222222 11122233332222222 211221110
Q ss_pred -HHHHHHHHHHHcCCCchH-HHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH
Q 007863 434 -DDKLGALCMQWLKDKVYS-IRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT 511 (587)
Q Consensus 434 -~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~ 511 (587)
.+. ..+...-.++... -.++-...|+.-.-.+|.+.-.+..+-.+-.++.=.++.+|.+.--+++-++..- +.
T Consensus 599 ~Iq~--q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSN-Pq-- 673 (878)
T KOG2005|consen 599 KIQS--QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSN-PQ-- 673 (878)
T ss_pred Eech--hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCC-Cc--
Confidence 111 1111122221111 0111122222222234544333445555555666677889988888888776432 21
Q ss_pred HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHH-hcCCCCccHHHHHHHHHHH
Q 007863 512 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE-LSEDPDVDVRFFATQALQS 579 (587)
Q Consensus 512 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~-l~~d~~~~Vr~~a~~al~~ 579 (587)
-.++..+.++.+|.+.++-.+++-+++.+...-.+.. ...++..+.. ...|++.-.-.+.+++|-.
T Consensus 674 -~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNAR-la~mLrqlaSYyyKd~~~Lf~vriAQGL~h 740 (878)
T KOG2005|consen 674 -VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNAR-LAQMLRQLASYYYKDSKALFVVRIAQGLVH 740 (878)
T ss_pred -chHHHHHHHhccCcchHHHHHHHHHhccccCCcchHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 3578889999999999999999999998865433222 2233333333 2345554333334444433
No 293
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=88.35 E-value=11 Score=30.29 Aligned_cols=97 Identities=9% Similarity=0.117 Sum_probs=68.4
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH----HHhHHHHHH
Q 007863 445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVI 520 (587)
Q Consensus 445 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~l~ 520 (587)
+.+++|..-...+..+..- . .-....+..+.+.++++++.+...|+..+..+..++|.... ....+..+.
T Consensus 13 ~~~~D~~~il~icd~I~~~----~--~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~ 86 (133)
T cd03561 13 LEEPDWALNLELCDLINLK----P--NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELV 86 (133)
T ss_pred cCCccHHHHHHHHHHHhCC----C--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHH
Confidence 3456666555444444321 1 11345677788888889999999999999999999987532 234555567
Q ss_pred hhcCC---CCccHHHHHHHHHHHHHhhhch
Q 007863 521 NASKD---RVPNIKFNVAKVLQSLIPIVDQ 547 (587)
Q Consensus 521 ~~l~d---~~~~vR~~a~~~l~~l~~~~~~ 547 (587)
+++.. .++.||..++..+..+...++.
T Consensus 87 ~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 87 KIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 76654 4788999999999999888765
No 294
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=88.35 E-value=3.7 Score=34.18 Aligned_cols=77 Identities=17% Similarity=0.124 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChh--hhhhchHHHHHHhc
Q 007863 173 QDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFS 250 (587)
Q Consensus 173 ~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~ 250 (587)
.|+.-++|++|.+++..+........-...+++.+...+.| +.++|..+...+.+++...+.. ...+.+.+.+...+
T Consensus 37 vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L 115 (169)
T PF08623_consen 37 VDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL 115 (169)
T ss_dssp EEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 45567899999999999988765544456678888888999 7889999999999998766542 12344555555444
No 295
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=88.23 E-value=71 Score=39.00 Aligned_cols=216 Identities=14% Similarity=0.159 Sum_probs=116.4
Q ss_pred HHHhcCCCChHHHHHHHHHhHHhhhhhch--------hhHhhhhHHHHHHH-hcCCCcHHHHHHHHHHHHHHHhhChhhH
Q 007863 363 FLSLLKDEFPDVRLNIISKLDQVNQVIGI--------DLLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFF 433 (587)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--------~~~~~~~~~~l~~~-~~~~~~~vr~~~~~~l~~l~~~~~~~~~ 433 (587)
+...+...++++|..+......+...... -...+.++..+..+ +.|.++.+|......+. ..+.+...
T Consensus 486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~la 562 (2341)
T KOG0891|consen 486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLA 562 (2341)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhc
Confidence 44455566788888887776666544322 01122333333332 35677777776665554 11112222
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhc----CCccHHHHHHHHHHHHhhc--ccC
Q 007863 434 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN----NPHYLYRMTILQAISLLAP--VMG 507 (587)
Q Consensus 434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~~r~~a~~~l~~l~~--~~~ 507 (587)
.+......+..+.|....++..+...++.++.... .++...+........+ +....+......-+..+.. ...
T Consensus 563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~ 641 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNP-AYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVL 641 (2341)
T ss_pred CchhHHHHHHHhhhhhhhhHHhHHhhccccccccH-HHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence 34455667777888888899988888887765322 2222222222222222 2222222222221211111 111
Q ss_pred hHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch--HHHHHhHHHHHHHhcCC-CCccHHHHHHHHHHHHHH
Q 007863 508 SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--SVVEKSIRPCLVELSED-PDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 508 ~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d-~~~~Vr~~a~~al~~l~~ 582 (587)
...+...++..++..+.++...+-..+..+++.++...+. ..+....++.+.+...| ....-|..+-++++.+.+
T Consensus 642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s 719 (2341)
T KOG0891|consen 642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLES 719 (2341)
T ss_pred HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence 1223455566677778888888889999999999887662 22333455555553333 344567777888777665
No 296
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=88.15 E-value=9.7 Score=29.07 Aligned_cols=61 Identities=10% Similarity=0.076 Sum_probs=28.5
Q ss_pred CChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhChhh
Q 007863 370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGF 432 (587)
Q Consensus 370 ~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~--~~~~vr~~~~~~l~~l~~~~~~~~ 432 (587)
....-|..++.+++.+.+ ++.+.. ....|.+...+.. +.+..|..++++...+.+.++.+.
T Consensus 27 ~~~~ek~~~l~si~~lI~-~~~~~i-~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~ 89 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIK-LGGSHI-SSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEED 89 (107)
T ss_pred CCHHHHHHHHHHHHHHHH-HhHHHH-HHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHH
Confidence 345556666666666666 332222 2333333333321 122555555555555555554433
No 297
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=87.90 E-value=8.3 Score=30.41 Aligned_cols=134 Identities=13% Similarity=0.079 Sum_probs=83.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHhChh-h---hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH-HHHH-hHHHHH
Q 007863 446 KDKVYSIRDAAANNVKRLAEEFGPD-W---AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE-ITCS-QLLPVV 519 (587)
Q Consensus 446 ~d~~~~vr~~a~~~l~~l~~~~~~~-~---~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~-~~l~~l 519 (587)
...+.+-++.....|++++- .+. + ..-.++..+...+..+|.....-++..+.+++..-... .+.+ .=+|.+
T Consensus 27 ~tt~~eakeqv~ANLANFAY--DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~pli 104 (173)
T KOG4646|consen 27 TTTNIEAKEQVTANLANFAY--DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLI 104 (173)
T ss_pred HhccHHHHHHHHHHHHhhcc--CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceE
Confidence 34455556666555555542 111 1 12345666666777888888888888887777533222 2222 236778
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHhhhc---hHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863 520 INASKDRVPNIKFNVAKVLQSLIPIVD---QSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 520 ~~~l~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~ 581 (587)
+..++|+...+-..++-++..+...-. +......++..+.+.......+.|..|..++++..
T Consensus 105 i~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~ 169 (173)
T KOG4646|consen 105 IFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV 169 (173)
T ss_pred EeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence 888999988888888888877754321 12334456666666666667778888888887654
No 298
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=87.58 E-value=14 Score=30.09 Aligned_cols=139 Identities=19% Similarity=0.188 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCC-CcH
Q 007863 255 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSD-SSQ 333 (587)
Q Consensus 255 ~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d-~~~ 333 (587)
+.||...+.++..++...-++. ++++++.+.+.++.+ +......+..|..+.+-+.. ..+. ...
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~-Wp~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~-------------~~~~~~~~ 66 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQ-WPDFLEDLLQLLQSS-PQHLELVLRILRILPEEITD-------------FRRSSLSQ 66 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHT-------------SHCCHSHH
T ss_pred hhHHHHHHHHHHHHHHHHChhh-CchHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHh-------------hhchhhhH
Confidence 3566777777777776543322 566777777776663 44444555555555332111 0001 112
Q ss_pred HHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCC----ChHHHHHHHHHhHHhhhhhchhhHhh-hhHHHHHHHhcC
Q 007863 334 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE----FPDVRLNIISKLDQVNQVIGIDLLSQ-SLLPAIVELAED 408 (587)
Q Consensus 334 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~----~~~vr~~a~~~l~~i~~~~~~~~~~~-~~~~~l~~~~~~ 408 (587)
.-|...-+.+..- .+.++..+.+.+... .+.+...++.++..+...+..+.+.. .+++.+..++.+
T Consensus 67 ~r~~~l~~~l~~~---------~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~ 137 (148)
T PF08389_consen 67 ERRRELKDALRSN---------SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQS 137 (148)
T ss_dssp HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCC
Confidence 2222222222222 122333333333322 26667777777777666555444322 356666665544
Q ss_pred CCcHHHHHHHH
Q 007863 409 RHWRVRLAIIE 419 (587)
Q Consensus 409 ~~~~vr~~~~~ 419 (587)
++- +..+++
T Consensus 138 ~~~--~~~A~~ 146 (148)
T PF08389_consen 138 PEL--REAAAE 146 (148)
T ss_dssp CCC--HHHHHH
T ss_pred HHH--HHHHHH
Confidence 333 444444
No 299
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.91 E-value=33 Score=33.64 Aligned_cols=333 Identities=12% Similarity=0.080 Sum_probs=148.1
Q ss_pred HHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh--hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC--CCc
Q 007863 202 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPT 277 (587)
Q Consensus 202 ~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~ 277 (587)
.++..+++.+.-.+.+.-...+..|.++.-.... ......++..+.++..-.++..|...+..+-++....|- ...
T Consensus 304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv 383 (791)
T KOG1222|consen 304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMV 383 (791)
T ss_pred hHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHh
Confidence 3555566555555544444444444444322211 223455788888888888999999999888777643331 222
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHh-HhcCCCcHHHHHHHHHHHHhhhhhhchHH
Q 007863 278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVK-ELSSDSSQHVRSALATVIMGMAPILGKDA 354 (587)
Q Consensus 278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~-~~~~d~~~~vr~~a~~~l~~l~~~~~~~~ 354 (587)
...++|.+..++++... ...|+..+..++-.-... ......++.+. ..+...+.+|-.+.+...-.++-.-....
T Consensus 384 ~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQ 461 (791)
T KOG1222|consen 384 NGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQ 461 (791)
T ss_pred hccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccce
Confidence 33578999998877542 122333332221100000 01122333332 23333444444444433223321000000
Q ss_pred ---HHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhh--HhhhhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhh
Q 007863 355 ---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQL 428 (587)
Q Consensus 355 ---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~~~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~ 428 (587)
-.+.+--.+...++..++- ....+..+.++-|... +.+ .+..+...+. |.+.. ..++++|.++..-
T Consensus 462 lvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fid-yvgdLa~i~~nd~~E~---F~~EClGtlanL~ 533 (791)
T KOG1222|consen 462 LVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFID-YVGDLAGIAKNDNSES---FGLECLGTLANLK 533 (791)
T ss_pred EEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHHH-HHHHHHHHhhcCchHH---HHHHHHHHHhhcc
Confidence 0001111122222222211 1122223333333211 111 1112222222 22222 3455555555432
Q ss_pred C----hhhHH--HHHHHHHHHHcCCC--chHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCC--ccHHHHHHH
Q 007863 429 G----VGFFD--DKLGALCMQWLKDK--VYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNP--HYLYRMTIL 496 (587)
Q Consensus 429 ~----~~~~~--~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~--~~~~r~~a~ 496 (587)
- .+.+. ..++|-+.+.++.. ..+.....+-.+|.++....-.. ....+++.+.++++.. +.+.-...+
T Consensus 534 v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~Qii 613 (791)
T KOG1222|consen 534 VTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQII 613 (791)
T ss_pred cCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHH
Confidence 1 11111 13455554444321 12344445555566554322111 1255788888876432 222223333
Q ss_pred HHHHHhhcc-cChHHH-HH-hHHHHHHhhcCCCCccHHHHHHHHHHHHHhh
Q 007863 497 QAISLLAPV-MGSEIT-CS-QLLPVVINASKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 497 ~~l~~l~~~-~~~~~~-~~-~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~ 544 (587)
..+..+..+ ...+.+ .+ ..-..+..+.+|.+..+|..+=.+|..++..
T Consensus 614 yVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 614 YVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 444444332 222211 12 2334678899999999999998888877654
No 300
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=86.54 E-value=33 Score=33.37 Aligned_cols=145 Identities=19% Similarity=0.152 Sum_probs=87.8
Q ss_pred hhHHHhhhcCc--hhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCC-CCcchhhHHhhhhhhccCCCHHHH---
Q 007863 88 LPPLETLCTVE--ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEALK--- 161 (587)
Q Consensus 88 ~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~-~~~~r~~a~~l~~~~~~~~~~~~~--- 161 (587)
+++|..+...+ +..||..+.+.|.++...-..+.+...-+..+.++.+.. ........++++..++++..+...
T Consensus 182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lv 261 (832)
T KOG3678|consen 182 LDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLV 261 (832)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34555555555 457799999999987765544544444455565555432 344445567788888887754322
Q ss_pred -HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcc
Q 007863 162 -TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL 232 (587)
Q Consensus 162 -~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 232 (587)
...++-+.-.+.-.+|.+-.-++-+|++++-+-+.+ -+...+-..+.-+....++-.|..|+.+...++..
T Consensus 262 aa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 262 AAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred hhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence 223344444556666887777778888877654431 12222333444466667777888888777766553
No 301
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=86.44 E-value=15 Score=29.38 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=56.4
Q ss_pred hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHH----HHHhHHHHHHhhcCCCC--ccHHHHHHHHHHHHHhhhch
Q 007863 474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQ 547 (587)
Q Consensus 474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~~~l~d~~--~~vR~~a~~~l~~l~~~~~~ 547 (587)
...+..+.+.+.++++.+...|+..+..+..++|... ....++..+..++.++. +.||..++..+..+...+..
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 4466677777888899999999999999999888753 24556777777776643 33899999999999887754
No 302
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=86.10 E-value=15 Score=28.86 Aligned_cols=70 Identities=14% Similarity=0.090 Sum_probs=38.3
Q ss_pred hhhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Q 007863 396 QSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 467 (587)
Q Consensus 396 ~~~~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 467 (587)
..++|.+.+.+. ....+.|.++...++.++...+-+ ...+.++..+......... ...++.++..+++.-
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 456777777666 566677777777777777654421 1112233323222222222 356777777776544
No 303
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=86.01 E-value=15 Score=28.83 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhh-hcCCccH-HHHHHHHHHHHhhccc
Q 007863 433 FDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM-INNPHYL-YRMTILQAISLLAPVM 506 (587)
Q Consensus 433 ~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~~-~r~~a~~~l~~l~~~~ 506 (587)
+...++|.+...+. ....+.|.++...++.++....-+ +.++..+.+. ..+.... ....++.++..+.+.-
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~---~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS---DEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc---HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 35678999999998 778899999999999998865532 3344444332 3332222 2356777777777644
No 304
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=85.99 E-value=13 Score=28.32 Aligned_cols=63 Identities=13% Similarity=0.128 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhh
Q 007863 174 DDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 238 (587)
Q Consensus 174 ~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~ 238 (587)
..+..-|..+..+++.+.+..++ ..+.+++...+...+.. ++.|..+++++..+...+++++.
T Consensus 26 ~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~--~~l~~~al~~W~~fi~~L~~~~l 90 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI--PELREEALSCWNCFIKTLDEEDL 90 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHHCCHHHH
Confidence 46677899999999999985443 23445555555555544 48899999999999998887533
No 305
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=85.82 E-value=15 Score=28.72 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=48.5
Q ss_pred HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHH------HhHHHHHHHhc--------CCCCccHHHHHHHHH
Q 007863 512 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE------KSIRPCLVELS--------EDPDVDVRFFATQAL 577 (587)
Q Consensus 512 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~------~~i~~~l~~l~--------~d~~~~Vr~~a~~al 577 (587)
...++..+.+-+++.++.|+..+++.|..++....+. |. ..++..+.+.. .+....||..|.+++
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~-f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~ 114 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD-FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELI 114 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH-HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence 4678888888899999999999999999998875433 22 22333344432 233457999999998
Q ss_pred HHHH
Q 007863 578 QSKD 581 (587)
Q Consensus 578 ~~l~ 581 (587)
+.+-
T Consensus 115 ~~if 118 (122)
T cd03572 115 KAIF 118 (122)
T ss_pred HHHh
Confidence 8764
No 306
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=85.51 E-value=27 Score=31.41 Aligned_cols=50 Identities=12% Similarity=0.195 Sum_probs=31.8
Q ss_pred HhHHHHHHhhcCCCC--ccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCC
Q 007863 513 SQLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSED 564 (587)
Q Consensus 513 ~~~l~~l~~~l~d~~--~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d 564 (587)
..++..++..+.++. +.+=..++.+|..+++.= +.+...++++|..+-.+
T Consensus 113 ~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~R--P~~~~~Il~~ll~~~~~ 164 (239)
T PF11935_consen 113 NGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQR--PQFMSRILPALLSFNPN 164 (239)
T ss_dssp HHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHS--GGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHhcCcc
Confidence 456667777776654 556667777777776642 34556788888886443
No 307
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=85.51 E-value=17 Score=29.10 Aligned_cols=75 Identities=12% Similarity=0.072 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhcccCc--hhHHHHHHHHHHHHhccc
Q 007863 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQDDQ--DSVRLLAVEGCGALGKLL 233 (587)
Q Consensus 160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~l~~d~~--~~vr~~a~~~l~~l~~~~ 233 (587)
..+..+..+.+-+.++++.+...++..|..+++..|..- ....++..+..++.+.. +.||..+...+...+..+
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 345566667777788999999999999999998877521 12334555555655543 236777777666666655
Q ss_pred C
Q 007863 234 E 234 (587)
Q Consensus 234 ~ 234 (587)
.
T Consensus 114 ~ 114 (133)
T smart00288 114 K 114 (133)
T ss_pred c
Confidence 3
No 308
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.37 E-value=41 Score=33.30 Aligned_cols=334 Identities=9% Similarity=0.088 Sum_probs=153.8
Q ss_pred hHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC---
Q 007863 199 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--- 275 (587)
Q Consensus 199 ~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--- 275 (587)
+-.++..+|......-++..|...+.+|.-+-..-. .....++..+..++.-.+...|..+..-+...+..++..
T Consensus 17 FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~--i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn 94 (616)
T KOG2229|consen 17 FPSELKDLLRTNHTVLPPELREKIVKALILLRNKNL--IVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKN 94 (616)
T ss_pred hhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCc--CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccc
Confidence 334455555555555567778777777766543211 123456666666666666667887776666666544432
Q ss_pred -CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHH-HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch-
Q 007863 276 -PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAI-QHILPCVKELSSDSSQHVRSALATVIMGMAPILGK- 352 (587)
Q Consensus 276 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~- 352 (587)
.....+..++.+++.+++.. +|..++..+++......|. ..-+..+...+-+.++.+..+++..+-.--..-..
T Consensus 95 ~klnkslq~~~fsml~~~d~~---~ak~a~~~~~eL~kr~iW~d~~tV~i~~~acf~~~~ki~vs~l~FfL~~D~~dee~ 171 (616)
T KOG2229|consen 95 DKLNKSLQAFMFSMLDQSDST---AAKMALDTMIELYKRNIWNDSKTVNIITTACFSKVPKILVSGLRFFLGADNEDEED 171 (616)
T ss_pred chHHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHHHhcccccchhHHHHHHHHhccCcHHHHhhhHHhccCCcccccc
Confidence 12234667777888887765 3334444444433333221 22333333334455566666655544222110000
Q ss_pred ------HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhh------------------hchhhHhhhhHHHHHHHhcC
Q 007863 353 ------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV------------------IGIDLLSQSLLPAIVELAED 408 (587)
Q Consensus 353 ------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~------------------~~~~~~~~~~~~~l~~~~~~ 408 (587)
+...+.+-.++.+..+..-..=......+...+-.. -.++.+.+.+++.+... .
T Consensus 172 dsd~~~d~dg~~~~~l~~~~vnkktkkr~~kl~~a~k~vkkkqk~~~~~~t~nfs~i~ll~DpQ~fAEkLfk~~~~~--~ 249 (616)
T KOG2229|consen 172 DSDSESDEDGPDADALLHQRVNKKTKKRQKKLLRAAKSVKKKQKKKKNAPTFNFSAIHLLHDPQGFAEKLFKQLLAC--K 249 (616)
T ss_pred ccccccccccccHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhcCCCCCCCCccHHHhhcChhHHHHHHHHHHhhh--h
Confidence 000011112222222211111111111222222110 01223334444444332 3
Q ss_pred CCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhh-hcCC
Q 007863 409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM-INNP 487 (587)
Q Consensus 409 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~-l~~~ 487 (587)
....+|...+..|+.+.... ..+.=.+-|.+..+++....+|.+-...+ .+.+..+-+....+.++..+.+. ..|.
T Consensus 250 er~E~klm~~~lisRliG~H--kL~l~~fY~fl~~yl~phqrDvTqIl~~a-aQa~Hd~VP~d~iEpl~k~Ian~FVtD~ 326 (616)
T KOG2229|consen 250 ERFEVKLMLMKLISRLIGIH--KLFLFGFYPFLQRYLQPHQRDVTQILAAA-AQASHDLVPPDIIEPLLKTIANNFVTDE 326 (616)
T ss_pred hhHHHHHHHHHHHHHHhhhh--HHHHhhhHHHHHHHcCcchhhHHHHHHHH-HHhccCCCChHHhhHHHHHHHHHhcccC
Confidence 34556666666665554322 12223466778888888777765433222 22222222211234455555544 4444
Q ss_pred -ccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhh
Q 007863 488 -HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 488 -~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~ 544 (587)
.+.+-...+.++..++..++.. +.+.++..+..+-+... .+-..+..++-.+...
T Consensus 327 ~spEv~~vgiN~iREic~Rvpla-MteeLLqDLa~YK~sk~-K~V~maarSLI~L~Re 382 (616)
T KOG2229|consen 327 NSPEVMAVGINAIREICERVPLA-MTEELLQDLASYKTSKK-KVVMMAARSLIALYRE 382 (616)
T ss_pred CCcceeehhhhHHHHHHhhcchh-hcHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHH
Confidence 3566667777777776654432 23444444444433322 2333444455444443
No 309
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=85.23 E-value=15 Score=28.42 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=23.9
Q ss_pred hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh
Q 007863 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 432 (587)
Q Consensus 396 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~ 432 (587)
..++..|..-+.+++|++...++..+..+.+..|..+
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f 72 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF 72 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH
Confidence 3455566666666677777777777777776666543
No 310
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=84.75 E-value=19 Score=39.20 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHH
Q 007863 489 YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540 (587)
Q Consensus 489 ~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~ 540 (587)
..+|.++..++...+...+......++++.+ -.|++|.+|...+..+..
T Consensus 882 vd~r~~a~~~~v~~~~~~~~~~~l~~~leil---~~~~dp~~R~~i~~ml~~ 930 (1180)
T KOG1932|consen 882 VDVRICAEELNVDLGGVDGSPDDLAYILEIL---ENDPDPVIRHKILDMLSQ 930 (1180)
T ss_pred hhhHHHhhhhhhhhcccCCChHHHHHHhhhc---ccCcchHHHHHHHHHhhc
Confidence 4578888888887776555443344444433 357888899999998887
No 311
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=82.88 E-value=66 Score=33.76 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=52.8
Q ss_pred hhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHh
Q 007863 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 310 (587)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 310 (587)
....+..+..+..|+-..|+..++..+..+...-+. ....++..++.-+.|++..+-..|...|..+...
T Consensus 302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPE--qE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~ 371 (988)
T KOG2038|consen 302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPE--QENNLLVLLVNKLGDPQNKIASKASYLLEGLLAK 371 (988)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhh
Confidence 345667777788899899999998888877654322 2345888888889999988888888888777654
No 312
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=82.44 E-value=19 Score=27.93 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=23.7
Q ss_pred hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH
Q 007863 474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE 509 (587)
Q Consensus 474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~ 509 (587)
..++..+.+.+.+++|.+..-|+..+..+.+++|..
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~ 71 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER 71 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH
Confidence 345555666666667777777777777777766654
No 313
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=82.21 E-value=6.6 Score=31.73 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=30.5
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCC
Q 007863 279 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS 331 (587)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~ 331 (587)
+.+-..+..++.+++.+|++.|++++-..-. + .....-..+..+++|.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~----~-~l~pY~d~L~~Lldd~ 63 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD----P-YLTPYKDNLENLLDDK 63 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----H-HHHhHHHHHHHHcCcc
Confidence 3566777788888888888888888877633 1 1122234455556554
No 314
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=81.55 E-value=23 Score=27.67 Aligned_cols=38 Identities=11% Similarity=0.030 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHh
Q 007863 158 EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE 195 (587)
Q Consensus 158 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~ 195 (587)
......+...+..-+++.++.|+..++..|..++...+
T Consensus 33 ~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~ 70 (122)
T cd03572 33 VGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN 70 (122)
T ss_pred HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence 44566788888888899999999999999998887654
No 315
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=81.47 E-value=18 Score=31.29 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=16.8
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 007863 437 LGALCMQWLKDKVYSIRDAAANNVKRLA 464 (587)
Q Consensus 437 l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 464 (587)
++..+++..-+.-..||..|..++..+.
T Consensus 8 ~~~~llrqa~EKiDrvR~~A~~~l~~ll 35 (193)
T PF12612_consen 8 IIGGLLRQAAEKIDRVREVAGKCLQRLL 35 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444555667777777777666
No 316
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=81.21 E-value=18 Score=26.23 Aligned_cols=68 Identities=13% Similarity=0.120 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHH
Q 007863 160 LKTELRTIYRQL-CQDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCG 227 (587)
Q Consensus 160 ~~~~l~~~l~~l-~~~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~ 227 (587)
..+.++..+... ...++..||....+++..+....+. ..-++.++..+.....+++..+-..|.+++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 445555555555 5667889999999999998887654 2346677888887787777766666666554
No 317
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=81.19 E-value=3.2 Score=22.79 Aligned_cols=12 Identities=25% Similarity=0.158 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHh
Q 007863 491 YRMTILQAISLL 502 (587)
Q Consensus 491 ~r~~a~~~l~~l 502 (587)
+|..++.+|+.+
T Consensus 3 vR~~aa~aLg~~ 14 (30)
T smart00567 3 VRHEAAFALGQL 14 (30)
T ss_pred HHHHHHHHHHHc
Confidence 444455555444
No 318
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=80.97 E-value=94 Score=34.23 Aligned_cols=150 Identities=14% Similarity=0.193 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcccCh-------hhhhhchHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhC--CCCcccchHHHHHHhc
Q 007863 220 LLAVEGCGALGKLLEP-------QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVG--PEPTRSDVVPAYVRLL 289 (587)
Q Consensus 220 ~~a~~~l~~l~~~~~~-------~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l 289 (587)
..+..+|..+.+..++ +...-..++.+...+. .+++++...+.+.+..+..+-. ........+..+..++
T Consensus 1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lL 1822 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLL 1822 (2235)
T ss_pred HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHH
Confidence 3455566665554442 2222223445544443 5677888888887765433211 0111223556666666
Q ss_pred CCChHHHHHHHHHhHHHHHHh--hCHHHHHHhHHHHHh-HhcCCCcHHHHHHHHHHHHhhhhh--hchHH--HHHhHH-H
Q 007863 290 RDNEAEVRIAAAGKVTKICRI--LNPELAIQHILPCVK-ELSSDSSQHVRSALATVIMGMAPI--LGKDA--TIEQLL-P 361 (587)
Q Consensus 290 ~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~~l~-~~~~d~~~~vr~~a~~~l~~l~~~--~~~~~--~~~~l~-~ 361 (587)
.+ .+.-|..++..|..+... ++.+...+..+.++. -++...+..+|.++++.++.+... .|+.. ..-.++ .
T Consensus 1823 HS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~ 1901 (2235)
T KOG1789|consen 1823 HS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPE 1901 (2235)
T ss_pred hc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchH
Confidence 64 478899999998888763 122222222222333 345667899999999999887532 23321 112233 3
Q ss_pred HHHHhcCCC
Q 007863 362 IFLSLLKDE 370 (587)
Q Consensus 362 ~l~~~l~d~ 370 (587)
.+...++|.
T Consensus 1902 ~f~d~~RD~ 1910 (2235)
T KOG1789|consen 1902 IFADSLRDS 1910 (2235)
T ss_pred HHHHHHhcC
Confidence 455666664
No 319
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.75 E-value=61 Score=31.91 Aligned_cols=345 Identities=15% Similarity=0.157 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHhcccCh--hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC--CCcccchHHHHHHhcCCCh
Q 007863 218 VRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNE 293 (587)
Q Consensus 218 vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~ 293 (587)
.-..|+..|..+++...- ......++..+.+.+.-.+...-..+...|-++.-.... ......++.-+.+++.-..
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h 358 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQH 358 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCC
Confidence 344566666666665543 234556778888887777766666666666655432221 1123357788888888888
Q ss_pred HHHHHHHHHhHHHHHHhhC--HHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhh--hhchHHHHHhHHHHHHH-hcC
Q 007863 294 AEVRIAAAGKVTKICRILN--PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP--ILGKDATIEQLLPIFLS-LLK 368 (587)
Q Consensus 294 ~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~--~~~~~~~~~~l~~~l~~-~l~ 368 (587)
++.|++.+..+-.++-.-| +.-+...++|.+..++.+... ..-|...+..+.- .+..-......++.+.+ .+.
T Consensus 359 ~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~ 436 (791)
T KOG1222|consen 359 PDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLS 436 (791)
T ss_pred HHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888877644222 333445678888888865432 1112222222210 00000111223333332 223
Q ss_pred CCChHHHHHHHHHhHHhh----------hhhchhhHh-------hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh
Q 007863 369 DEFPDVRLNIISKLDQVN----------QVIGIDLLS-------QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431 (587)
Q Consensus 369 d~~~~vr~~a~~~l~~i~----------~~~~~~~~~-------~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~ 431 (587)
....+|-...+..--.++ +.-|-+.+. +.++-.+.+.+...+...+...+..++.++...
T Consensus 437 ~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~--- 513 (791)
T KOG1222|consen 437 GTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIA--- 513 (791)
T ss_pred cCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHh---
Confidence 333333333221111111 100100000 111111111122222333344444444433322
Q ss_pred hHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhC--hhh--h--hhchHHHHHhhhcCC--ccHHHHHHHHHHHHhh
Q 007863 432 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG--PDW--A--MQHIVPQVLEMINNP--HYLYRMTILQAISLLA 503 (587)
Q Consensus 432 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~--~--~~~~~~~l~~~l~~~--~~~~r~~a~~~l~~l~ 503 (587)
-.|.+.+ -.++|+|.++..-- -+| + ...++|.+...+.-. ........+-++|.++
T Consensus 514 -------------~nd~~E~---F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a 577 (791)
T KOG1222|consen 514 -------------KNDNSES---FGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMA 577 (791)
T ss_pred -------------hcCchHH---HHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhh
Confidence 1233322 45566666654211 111 1 256788887765432 1223333444455554
Q ss_pred cccChHHH--HHhHHHHHHhhcCCC--CccHHHHHHHHHHHHHhh-hchH-HHHH-hHHHHHHHhcCCCCccHHHHHHHH
Q 007863 504 PVMGSEIT--CSQLLPVVINASKDR--VPNIKFNVAKVLQSLIPI-VDQS-VVEK-SIRPCLVELSEDPDVDVRFFATQA 576 (587)
Q Consensus 504 ~~~~~~~~--~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~l~~~-~~~~-~~~~-~i~~~l~~l~~d~~~~Vr~~a~~a 576 (587)
........ ...+++.++.+++.. +.+.-...+..+.++..+ .... -+.+ ..-.-+..+..|.+.+||...-.|
T Consensus 578 ~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~ 657 (791)
T KOG1222|consen 578 RDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNA 657 (791)
T ss_pred hhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHH
Confidence 43322222 234777777766542 333333444444444433 1111 1111 233456678999999999999999
Q ss_pred HHHHHHH
Q 007863 577 LQSKDQV 583 (587)
Q Consensus 577 l~~l~~~ 583 (587)
|.-+++.
T Consensus 658 LdIiae~ 664 (791)
T KOG1222|consen 658 LDIIAEH 664 (791)
T ss_pred HHHHHHh
Confidence 9887764
No 320
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=80.38 E-value=81 Score=33.15 Aligned_cols=123 Identities=13% Similarity=0.098 Sum_probs=70.5
Q ss_pred HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhh
Q 007863 318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 397 (587)
Q Consensus 318 ~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~ 397 (587)
..++..+..+..|+=..|+..++..+..+...-+. ....++-.+..-+.|++..+-..|...|..+......- .-.
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPE--qE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnM--K~V 378 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPE--QENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNM--KIV 378 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcc--eee
Confidence 44667777788888889998888887776544332 33467777888888988888777777777665443221 123
Q ss_pred hHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH
Q 007863 398 LLPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW 444 (587)
Q Consensus 398 ~~~~l~~~~~~~~--~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~ 444 (587)
++..+.+++--++ .+...-++-.+..+.-......+...++.+++.+
T Consensus 379 vi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~l 427 (988)
T KOG2038|consen 379 VIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSL 427 (988)
T ss_pred hHHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHH
Confidence 4555555543333 2223334444444332222222334444444433
No 321
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=80.21 E-value=62 Score=31.66 Aligned_cols=144 Identities=13% Similarity=0.124 Sum_probs=77.9
Q ss_pred HHHHHhcCCCC--hHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChh---hHH
Q 007863 361 PIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVG---FFD 434 (587)
Q Consensus 361 ~~l~~~l~d~~--~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~---~~~ 434 (587)
..++.++..++ ..||..+...|.++...-..+.+...-+..|..+.+. +..+.....+..++.+.++.... .+.
T Consensus 183 D~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lva 262 (832)
T KOG3678|consen 183 DLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVA 262 (832)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 34555555543 4568888888888776544443323334444444443 33445555555565555432211 111
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh----hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhc
Q 007863 435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAP 504 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~ 504 (587)
...+..++-+.+-.++.+-..++.+|+++.-.-|... +.+.+-..++-+....+...|..|+-+...++.
T Consensus 263 a~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 263 AGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred hcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 1122333344455667777778888888776544331 223333344444455567788888877776664
No 322
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=80.20 E-value=6.1 Score=38.93 Aligned_cols=108 Identities=9% Similarity=0.085 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHH---HhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHH-
Q 007863 435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAE---EFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI- 510 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~- 510 (587)
..+.+.+++.+.+++..|...+...+...+- .+|..+....++..+.+++...+...|....+.+.++.-.+..+.
T Consensus 430 ~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 430 YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence 3577888889988777666666555555543 334455568899999999888888899999999998887666542
Q ss_pred --H-HHhHHHHHHhhcCCCCccHHHHHHHHHHHHH
Q 007863 511 --T-CSQLLPVVINASKDRVPNIKFNVAKVLQSLI 542 (587)
Q Consensus 511 --~-~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~ 542 (587)
+ .+.-+..++.+.+|+...|....++.+.++.
T Consensus 510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNft 544 (743)
T COG5369 510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFT 544 (743)
T ss_pred hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcc
Confidence 2 2333667888999999999999999888774
No 323
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=80.14 E-value=2.1 Score=25.49 Aligned_cols=29 Identities=34% Similarity=0.252 Sum_probs=18.8
Q ss_pred hHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863 553 SIRPCLVELSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 553 ~i~~~l~~l~~d~~~~Vr~~a~~al~~l~ 581 (587)
..+|.|.+++...+++++..|..++..++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 35666666666666777777777776654
No 324
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=78.29 E-value=46 Score=29.16 Aligned_cols=63 Identities=11% Similarity=0.035 Sum_probs=30.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhh
Q 007863 282 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 348 (587)
Q Consensus 282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~ 348 (587)
.+.+.....+++.-.|.+|+.+.-...+.... +.+...+..++.|++.-|+.+...+|.++++
T Consensus 117 ~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~~----~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k 179 (208)
T cd07064 117 EPVMDEWSTDENFWLRRTAILHQLKYKEKTDT----DLLFEIILANLGSKEFFIRKAIGWALREYSK 179 (208)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHccCH----HHHHHHHHHhCCChHHHHHHHHHHHHHHHhc
Confidence 45555555555544444444433322222111 2334444455556666666666666655553
No 325
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=77.26 E-value=69 Score=30.55 Aligned_cols=181 Identities=8% Similarity=0.048 Sum_probs=99.0
Q ss_pred HHHHHHHHhcccCchhHHHHHHHHHHHHhcccChh----------hhhhchHHHHHHhcCCCchHHHHHHHHHHHHH---
Q 007863 202 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ----------DCVAHILPVIVNFSQDKSWRVRYMVANQLYEL--- 268 (587)
Q Consensus 202 ~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----------~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l--- 268 (587)
.++..+...+..-+.+.|+.++..+..+...-... ...+.++..+...-++++-.. .+...|...
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial--~~g~mlRec~k~ 153 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL--NCGDMLRECIKH 153 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH--HHHHHHHHHTTS
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc--hHHHHHHHHHhh
Confidence 34445555555555666666666666655442111 011445555555555443221 111111111
Q ss_pred ---HHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---H---HHHHhHHHHHhHhcCCCcHHHHHHH
Q 007863 269 ---CEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---E---LAIQHILPCVKELSSDSSQHVRSAL 339 (587)
Q Consensus 269 ---~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~---~~~~~~~~~l~~~~~d~~~~vr~~a 339 (587)
+..+ ..+..+..+....+.++=+|-..|...+..+...-.. + ...+.++..+.+++.++|.-+|+..
T Consensus 154 e~l~~~i----L~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 154 ESLAKII----LYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HHHHHHH----HTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHHHHHH----hCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 1111 0123444466777888888888888888776653211 1 1124566788889999999999999
Q ss_pred HHHHHhhhhhhchHHH------HHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhh
Q 007863 340 ATVIMGMAPILGKDAT------IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (587)
Q Consensus 340 ~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~ 388 (587)
++.|+++...-..-.+ .+.-+..+..+|+|.+..+|..|...+.-++..
T Consensus 230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 9999988643221111 123455677788888888888887777766543
No 326
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=76.69 E-value=12 Score=26.16 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhcc-cChHHHH-HhHHHHHHhhcC-CCCccHHHHHHHHHHHHHhhh
Q 007863 492 RMTILQAISLLAPV-MGSEITC-SQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 492 r~~a~~~l~~l~~~-~~~~~~~-~~~l~~l~~~l~-d~~~~vR~~a~~~l~~l~~~~ 545 (587)
..++++++++++.. .|..... ..+++.+.++.. ++...+|-.+..+|+.+....
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 45678888888753 3333222 357777776654 567888888888888876653
No 327
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=75.87 E-value=5.7 Score=23.50 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=14.5
Q ss_pred hHHHHHHhcCCCchHHHHHHHHHHHHH
Q 007863 242 ILPVIVNFSQDKSWRVRYMVANQLYEL 268 (587)
Q Consensus 242 l~~~l~~~~~d~~~~vR~~a~~~l~~l 268 (587)
.++.+.+++++.++.++..++.+|.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 444455555555555555555555554
No 328
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=75.24 E-value=43 Score=27.17 Aligned_cols=96 Identities=11% Similarity=0.176 Sum_probs=61.1
Q ss_pred CCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhCHHHH----HHhHHHH-Hh
Q 007863 252 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPELA----IQHILPC-VK 325 (587)
Q Consensus 252 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~-l~ 325 (587)
.++|..-...+..+.. +.....+.+..+.+-++ ..++.|...|+..+..+.+.+|.... ...++.. +.
T Consensus 16 ~~dw~~ileicD~In~------~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~ 89 (141)
T cd03565 16 SEDWGLNMEICDIINE------TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLV 89 (141)
T ss_pred CcCHHHHHHHHHHHhC------CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHH
Confidence 4566554444443321 12234456777777666 46788888899999999998887532 2344544 55
Q ss_pred HhcCC---CcHHHHHHHHHHHHhhhhhhchH
Q 007863 326 ELSSD---SSQHVRSALATVIMGMAPILGKD 353 (587)
Q Consensus 326 ~~~~d---~~~~vr~~a~~~l~~l~~~~~~~ 353 (587)
+++.+ .+..|+..++..+...+..++.+
T Consensus 90 ~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (141)
T cd03565 90 KLINPKNNPPTIVQEKVLALIQAWADAFRGS 120 (141)
T ss_pred HHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 55542 34688888888888887776543
No 329
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=75.02 E-value=1.1e+02 Score=31.59 Aligned_cols=76 Identities=12% Similarity=0.106 Sum_probs=58.3
Q ss_pred hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh----------HHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHH
Q 007863 472 AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS----------EITCSQLLPVVINASKDRVPNIKFNVAKVLQSL 541 (587)
Q Consensus 472 ~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~----------~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l 541 (587)
|...++..+++++......++..|+..+-.+.+.++. ++|..+++..+-+.-.|-.|.-.....++++.+
T Consensus 567 FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~v 646 (1053)
T COG5101 567 FLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGMV 646 (1053)
T ss_pred HHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhHH
Confidence 5577888888888878888999999999998876643 345566666666666777788888888888888
Q ss_pred Hhhhch
Q 007863 542 IPIVDQ 547 (587)
Q Consensus 542 ~~~~~~ 547 (587)
....+.
T Consensus 647 Ise~p~ 652 (1053)
T COG5101 647 ISEVPK 652 (1053)
T ss_pred Hhccch
Confidence 776554
No 330
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=74.56 E-value=36 Score=25.98 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=26.0
Q ss_pred HHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhCh
Q 007863 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV 430 (587)
Q Consensus 373 ~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~--~~~~vr~~~~~~l~~l~~~~~~ 430 (587)
.-|..++.+++.+.+..|.. .....|.+...+.. +.++.|..++++...+...++.
T Consensus 30 ~ek~~~i~ai~~lI~~~g~~--i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 30 NEKKRALRSIGFLIKLMGKH--ISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLKE 87 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCH
Confidence 33666666666666644321 12333433333322 2334555555555555554443
No 331
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=74.51 E-value=1.5 Score=23.57 Aligned_cols=12 Identities=50% Similarity=0.493 Sum_probs=5.4
Q ss_pred HHHHHHHhHHHH
Q 007863 296 VRIAAAGKVTKI 307 (587)
Q Consensus 296 vr~~a~~~l~~l 307 (587)
||..|+.+|+.+
T Consensus 1 VR~~Aa~aLg~i 12 (27)
T PF03130_consen 1 VRRAAARALGQI 12 (27)
T ss_dssp HHHHHHHHHGGG
T ss_pred CHHHHHHHHHHc
Confidence 344444444444
No 332
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=74.21 E-value=17 Score=26.35 Aligned_cols=68 Identities=12% Similarity=0.118 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHh-cccCchhHHHHHHHHHHHHhcccCh--hhhhhchHHHHHHhcCCCchHHHHHHHHHHH
Q 007863 199 LKSEIMSIFEEL-TQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLY 266 (587)
Q Consensus 199 ~~~~i~~~l~~l-~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~ 266 (587)
+...++..+..+ .+..+.+||...++|+..+...-+. ...++.++..+.....|.+..+-..|.+++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 334444444444 3444667787777777776654443 2345667777766666666666666665543
No 333
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=73.93 E-value=27 Score=33.13 Aligned_cols=37 Identities=14% Similarity=0.039 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh
Q 007863 435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW 471 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 471 (587)
...+..+.+.+...++.|...|+..++.+...+|..+
T Consensus 44 kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~ 80 (462)
T KOG2199|consen 44 KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRF 80 (462)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHH
Confidence 3455566666666666666666666666666666553
No 334
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=73.87 E-value=68 Score=28.88 Aligned_cols=63 Identities=17% Similarity=0.106 Sum_probs=36.9
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhh--------hhhHHH---HHHHHHHhcccCchhHHHHHHHHHHHHhccc
Q 007863 171 LCQDDMPMVRRSAATNLGKFAATVEA--------AHLKSE---IMSIFEELTQDDQDSVRLLAVEGCGALGKLL 233 (587)
Q Consensus 171 l~~~~~~~vR~~a~~~l~~l~~~~~~--------~~~~~~---i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~ 233 (587)
+++|+++.|.+.++.+...+....-. +..|.. +-..+..+..++++.||..++..+..+.-..
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~q 74 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQ 74 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc
Confidence 46788889988888888877664211 122222 2223444455666677777777766655443
No 335
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=73.85 E-value=37 Score=25.87 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhh
Q 007863 176 MPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD 237 (587)
Q Consensus 176 ~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~ 237 (587)
+..-|+.+..+++.+.+..++ ....+++...+...+. .++.|..|.+++..+...+++++
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHH
Confidence 345688999999999986654 2344555556665554 46699999999999998887643
No 336
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=73.32 E-value=37 Score=32.27 Aligned_cols=74 Identities=11% Similarity=0.011 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhccc-CchhHHHHHHHHHHHHhcccC
Q 007863 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLE 234 (587)
Q Consensus 161 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~ 234 (587)
.+..+..+.+.+.+.++.|...|+..++.++..++... .-..+...+..++.+ ..+.|+......+...++.+.
T Consensus 43 ~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K 121 (462)
T KOG2199|consen 43 GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFK 121 (462)
T ss_pred cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc
Confidence 35566777788888999999999999999998887521 122344455556663 345666555555555555433
No 337
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=72.93 E-value=16 Score=36.26 Aligned_cols=126 Identities=16% Similarity=0.171 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhC---hhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhc---ccChHHHHHhHHHHHHhhcCCCCc
Q 007863 455 AAANNVKRLAEEFG---PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP---VMGSEITCSQLLPVVINASKDRVP 528 (587)
Q Consensus 455 ~a~~~l~~l~~~~~---~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~---~~~~~~~~~~~l~~l~~~l~d~~~ 528 (587)
+++.+|..+.+... .......+...+.+.+.+|+..+.-.+...+.++.- .++.......++..+.+++...+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 44555555554321 111235677778888888887777666666666553 334455577889999999988888
Q ss_pred cHHHHHHHHHHHHHhhhchH----HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007863 529 NIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSK 580 (587)
Q Consensus 529 ~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l 580 (587)
..|.+..+.+..+.-..++. ....-=...+..+++|+++.|+....+.+..+
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNf 543 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNF 543 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhc
Confidence 89988888887665443332 22222255667788999999988877776554
No 338
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.99 E-value=2e+02 Score=33.39 Aligned_cols=92 Identities=14% Similarity=0.207 Sum_probs=71.3
Q ss_pred HHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCCCccHHH
Q 007863 494 TILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRF 571 (587)
Q Consensus 494 ~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~Vr~ 571 (587)
..+-+++..+...+.+ ...+...++....|.++..|..|+..+..++..++.. ......+|.|.++++|.+..|..
T Consensus 1523 ~li~~i~~~~~a~~~d--~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~ 1600 (1621)
T KOG1837|consen 1523 LLIAEIASDSVADKDD--LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVEC 1600 (1621)
T ss_pred HHHHHHHhhccCChhh--hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHH
Confidence 3344444444333333 3445555556667788999999999999999999875 56678999999999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 007863 572 FATQALQSKDQVMMSG 587 (587)
Q Consensus 572 ~a~~al~~l~~~~~~~ 587 (587)
.+++...++-.++|.+
T Consensus 1601 ~~q~li~q~e~~lGE~ 1616 (1621)
T KOG1837|consen 1601 LCQKLIRQLEEVLGEP 1616 (1621)
T ss_pred HHHHHHHHHHHHhchh
Confidence 9999999999999863
No 339
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.26 E-value=1.6e+02 Score=32.08 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=62.3
Q ss_pred HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch---H--HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhh
Q 007863 511 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---S--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 585 (587)
Q Consensus 511 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~--~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~ 585 (587)
+...++.....++++++-.+|..++..+....+.+.. . +.....+|.+.+.+.++++-+-..|.+++.++++..|
T Consensus 800 iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 800 IVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Confidence 4566777788899999999999999999876655432 1 4556778888888899999999999999999998877
Q ss_pred c
Q 007863 586 S 586 (587)
Q Consensus 586 ~ 586 (587)
+
T Consensus 880 D 880 (1014)
T KOG4524|consen 880 D 880 (1014)
T ss_pred h
Confidence 4
No 340
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=70.55 E-value=82 Score=28.43 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=46.1
Q ss_pred HHHhHhcCCC--cHHHHHHHHHHHHhhhhhh--chHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhh
Q 007863 322 PCVKELSSDS--SQHVRSALATVIMGMAPIL--GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 397 (587)
Q Consensus 322 ~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~ 397 (587)
..+++++.++ +..+|.+++.++..++..- ..+...+.+...+...++.....+-...+..+..+. . ..
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~----~----~E 185 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLY----P----EE 185 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcC----H----HH
Confidence 4455566665 4789999999998887543 345566666666666565554443333333332222 1 35
Q ss_pred hHHHHHHHhcC
Q 007863 398 LLPAIVELAED 408 (587)
Q Consensus 398 ~~~~l~~~~~~ 408 (587)
++|.|.++..+
T Consensus 186 L~~~I~~~f~~ 196 (249)
T PF06685_consen 186 LLPEIRKAFED 196 (249)
T ss_pred hHHHHHHHHHc
Confidence 67776665543
No 341
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=70.24 E-value=71 Score=27.56 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=38.7
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhh
Q 007863 283 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 349 (587)
Q Consensus 283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 349 (587)
+.+.....+++.-+|..+...+...... +...+.++..+..+..|++..||.+...+|..++..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 5566666666666666666555554433 122345566666666667777777777777666644
No 342
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.13 E-value=68 Score=32.06 Aligned_cols=99 Identities=7% Similarity=0.116 Sum_probs=67.9
Q ss_pred HHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHH----HHHhHHHH
Q 007863 443 QWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPV 518 (587)
Q Consensus 443 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~ 518 (587)
..+.+++|.+=...|..+..-- .-...++-.+.+.+++.+..+..-|+..|..+.++||..+ ..+.+++.
T Consensus 12 ~~l~~pDWa~NleIcD~IN~~~------~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~e 85 (470)
T KOG1087|consen 12 ESLAEPDWALNLEICDLINSTE------GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNE 85 (470)
T ss_pred ccccCccHHHHHHHHHHHhcCc------cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3456777766555544442211 1123566677777887777888888888888888888653 35667777
Q ss_pred HHhhcCCC--CccHHHHHHHHHHHHHhhhch
Q 007863 519 VINASKDR--VPNIKFNVAKVLQSLIPIVDQ 547 (587)
Q Consensus 519 l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~ 547 (587)
++...+.. .-.||..++..|..+...++.
T Consensus 86 mVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 86 MVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 77766653 678999999999988888765
No 343
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.10 E-value=1.8e+02 Score=31.30 Aligned_cols=114 Identities=8% Similarity=-0.021 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccc
Q 007863 201 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD 280 (587)
Q Consensus 201 ~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ 280 (587)
......+.+.+..+.......++..+.++.+..+...+.+..+=-+.....+.+.-.|....+..+.-...+.+-....+
T Consensus 23 ~a~~~~ldkGlr~~~t~eqpeavvr~~RLFek~PfpifiNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~hln~v~n~aE 102 (970)
T KOG1988|consen 23 NAVLMELDKGLRSGKTSEQPEAVVRFPRLFEKYPFPIFINSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHLNKVLNGAE 102 (970)
T ss_pred hHHHHHHhhcccccccccchHHHHHHHHHHhhCCchhhhhHHHHHHHHHhccCcHHHHHHHHHHHhhccccchhhhhhhh
Confidence 33444555566655555555566666777666654434444444455566677888888888877754433333222233
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH
Q 007863 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE 314 (587)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 314 (587)
++..+....+.+|+.-|..++..++.+...++..
T Consensus 103 ~lrri~~V~hsnDp~aRAllL~ilg~~s~lipEf 136 (970)
T KOG1988|consen 103 FLRRIFYVDHSNDPVARALLLRILGQLSALIPEF 136 (970)
T ss_pred hhheeEEeecCCCHHHHHHHHHHHHHhhhhcccc
Confidence 4444444556778888888888888887766553
No 344
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=67.89 E-value=35 Score=27.61 Aligned_cols=33 Identities=21% Similarity=0.156 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 007863 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAA 192 (587)
Q Consensus 160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~ 192 (587)
..+.+...+..++.++++.|++.|.+++...-.
T Consensus 14 ~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~ 46 (141)
T PF07539_consen 14 RSDELYDALLRLLSSRDPEVQKLALDCLLTWKD 46 (141)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 346777888899999999999999999987643
No 345
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.36 E-value=2.5e+02 Score=32.75 Aligned_cols=223 Identities=14% Similarity=0.152 Sum_probs=124.9
Q ss_pred hHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH------H
Q 007863 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE------L 315 (587)
Q Consensus 242 l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------~ 315 (587)
+.|+-...-.+.+..+|..+++|+..-. +..+..+..++...-.|.+..+-..+...+..+....-.. .
T Consensus 1038 l~Pfe~im~~s~s~~Irelv~rC~~~ni-----kSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~ 1112 (1514)
T KOG0929|consen 1038 LRPFEHIMKRSSSAEIRELVVRCISSNI-----KSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMD 1112 (1514)
T ss_pred cCcchHHhhccCcchhHHHHHhhhhhhh-----hhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhH
Confidence 4444444556778899999999988322 3347788888888888888888888877777444322111 1
Q ss_pred HHHhHHHHHhHhcC------CCcHHHHHHHHHHHHhhhhh-----hc------hHHHHHhHHHHHH---HhcCCCChHHH
Q 007863 316 AIQHILPCVKELSS------DSSQHVRSALATVIMGMAPI-----LG------KDATIEQLLPIFL---SLLKDEFPDVR 375 (587)
Q Consensus 316 ~~~~~~~~l~~~~~------d~~~~vr~~a~~~l~~l~~~-----~~------~~~~~~~l~~~l~---~~l~d~~~~vr 375 (587)
-....++.+.+... ++...+|..-. +...+.+. +. .+.+...-.|++. ....+....||
T Consensus 1113 sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~-ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr 1191 (1514)
T KOG0929|consen 1113 SFKDCVKCLEEFTKNLGFPDDSLNAIRFLRL-CALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVR 1191 (1514)
T ss_pred HHHHHHHHHHHHHHhcCCCccchHHHHHHHH-HHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHH
Confidence 12333444444332 12222221100 01111111 01 1222233445544 33457789999
Q ss_pred HHHHHHhHHhhhhhchh---hHhhhhHHHHHHHh----cC-----CCcHHHHHHHHHHHHHHHhhCh-----hhHHHHHH
Q 007863 376 LNIISKLDQVNQVIGID---LLSQSLLPAIVELA----ED-----RHWRVRLAIIEYIPLLASQLGV-----GFFDDKLG 438 (587)
Q Consensus 376 ~~a~~~l~~i~~~~~~~---~~~~~~~~~l~~~~----~~-----~~~~vr~~~~~~l~~l~~~~~~-----~~~~~~l~ 438 (587)
..+...+-.+....|.+ .+.+.+...+.... .+ .+......+..++..++..+.. ....+.++
T Consensus 1192 ~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~lL~~~~ 1271 (1514)
T KOG0929|consen 1192 KRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQLNNLLPKVL 1271 (1514)
T ss_pred HHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887754 22233333222211 11 1123445555555555554421 12335556
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHhChh
Q 007863 439 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 470 (587)
Q Consensus 439 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 470 (587)
..+..+.+.++..+-.....|+..+....|..
T Consensus 1272 ~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~ 1303 (1514)
T KOG0929|consen 1272 GLLVGCIKQDNQQLARIGTSCLLQLVSSNGEK 1303 (1514)
T ss_pred HHHHHHhcCcchhhHHhHHHHHHHHHHhcccc
Confidence 66667778888888888999999998877765
No 346
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=67.01 E-value=1.6e+02 Score=30.39 Aligned_cols=91 Identities=10% Similarity=0.062 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh----------hhhhhchHHHHHHhcCCCchHHHHHHHHHHHH
Q 007863 198 HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 267 (587)
Q Consensus 198 ~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----------~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~ 267 (587)
.+...++..+.++...+.+.|+..|+..+-++.+.++- +.+...++.-+.+...|-.+.-.....++++-
T Consensus 566 ~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~ 645 (1053)
T COG5101 566 SFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGM 645 (1053)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhH
Confidence 34555666777788888899999999999999887664 22233445555555667778888888888887
Q ss_pred HHHHhCCCCcccchHHHHHHh
Q 007863 268 LCEAVGPEPTRSDVVPAYVRL 288 (587)
Q Consensus 268 l~~~~~~~~~~~~l~~~l~~~ 288 (587)
+....++....+.++--+..+
T Consensus 646 vIse~p~~~~~~rlv~dlm~L 666 (1053)
T COG5101 646 VISEVPKTRDYKRLVLDLMDL 666 (1053)
T ss_pred HHhccchhhHHHHHHHHHHHh
Confidence 776655433333333333333
No 347
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=65.88 E-value=46 Score=28.46 Aligned_cols=55 Identities=16% Similarity=0.230 Sum_probs=26.5
Q ss_pred CchHHHHHHHHHHHHHHH-HhChhhh--hhchHHHHHhhhcCCccHHHHHHHHHHHHh
Q 007863 448 KVYSIRDAAANNVKRLAE-EFGPDWA--MQHIVPQVLEMINNPHYLYRMTILQAISLL 502 (587)
Q Consensus 448 ~~~~vr~~a~~~l~~l~~-~~~~~~~--~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l 502 (587)
.+......++.|+..+.. ..|-+.+ .+..++.+...+.+++..+|..+++.+..+
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 344555555566555443 1222211 144555555555556666666666665554
No 348
>KOG1926 consensus Predicted regulator of rRNA gene transcription (MYB-binding protein) [Transcription]
Probab=65.83 E-value=2.2e+02 Score=31.64 Aligned_cols=214 Identities=14% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHH
Q 007863 282 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP 361 (587)
Q Consensus 282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 361 (587)
+.++..+-.+ +..+|.+++..|..-...........+.+..+.+.+.+.-..+|.++..+++.+. ..+..-...++.
T Consensus 76 ldlf~klas~-l~~~r~~aa~~Ll~~lq~~~~ae~~~YvL~RLIrg~ss~resaRlgfs~~Ltev~--~~kai~a~~vL~ 152 (1129)
T KOG1926|consen 76 LDLFTKLASS-LRPVRLAAAFQLLADLQELRDAEELSYVLNRLIRGLSSDRESARLGFSLILTEVL--RPKAIEATSVLS 152 (1129)
T ss_pred HHHHHHHHhh-cHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhhh--ccccchHHHHHH
Q ss_pred HHHHhcCCCCh-----------HHHHHHHHHhHHhhhhh-----chhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 007863 362 IFLSLLKDEFP-----------DVRLNIISKLDQVNQVI-----GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 425 (587)
Q Consensus 362 ~l~~~l~d~~~-----------~vr~~a~~~l~~i~~~~-----~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~ 425 (587)
.+.+.+.-... -.+..+..++..-.... +.......+...+..+....+ +....+...+-...
T Consensus 153 ~i~~~~~~~~~~~~gkd~k~~~~G~Lf~l~si~~s~~l~~~~s~k~~e~~~~f~~~l~~LA~kk~-~L~~~c~~il~~sv 231 (1129)
T KOG1926|consen 153 TILQVLLVSSAKMKGKDEKLVAFGNLFGLESILQSGILKEASSVKKDEKFKRFTDLLLQLALKKN-WLQEPCVEILLLSV 231 (1129)
T ss_pred HHHHHHhhhcccccCccccchhhhhHHHHHHHHhhhHHHhhhhccccHHHHHHHHHHHHHhhhHH-HHHhHHHHHHHHHH
Q ss_pred HhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhh
Q 007863 426 SQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLA 503 (587)
Q Consensus 426 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~ 503 (587)
..++...+..+.++.+...++-+........ ..+-.+...++...-.+.++.... .++++....+.+..+..+.
T Consensus 232 ~qlp~~~~~~~~~ea~~~~l~ke~~~l~~~g-~~l~l~l~~~~k~~k~~~il~~~~---~~d~~p~~~~~l~s~s~vt 305 (1129)
T KOG1926|consen 232 KQLPASPFEEHVLEALLPLLTKEQLTLVMNG-DSLLLVLAKLPKVVKFEPILDDLV---WKDDYPLQLANLFSLSKVT 305 (1129)
T ss_pred HhccchHHHHHHHHhhhhhcChHhhhhhccc-chhHHHHHhhhhhhcccHHHHhhc---cCCccHHHHHHHhhhhHHh
No 349
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=64.45 E-value=1.7e+02 Score=29.66 Aligned_cols=251 Identities=12% Similarity=0.020 Sum_probs=116.8
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcH--HHHHHHHHHHHhhh-hhhchHHH
Q 007863 279 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ--HVRSALATVIMGMA-PILGKDAT 355 (587)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~--~vr~~a~~~l~~l~-~~~~~~~~ 355 (587)
+..+-++...++.++...+.+|+-.++........+.+ +..+..+..+.+- .+-..+.-+++.+. ..+..+ .
T Consensus 449 ~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~eev----l~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD-~ 523 (881)
T COG5110 449 PPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAEEV----LELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGD-L 523 (881)
T ss_pred chHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHHHH----HHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCch-H
Confidence 45677778888888888898888888877665555544 3444444434333 44444444454432 222222 2
Q ss_pred HHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh--hhH
Q 007863 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFF 433 (587)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~--~~~ 433 (587)
...++..+..--+. ..+.+..-.-+|+--.-..|..+..+.+...+... ..+ -.| ..+.+...+...|. -..
T Consensus 524 ts~ilqtf~Er~~~-e~~tqw~RFlaLgLa~Lf~g~~d~~d~v~eti~aI-eg~--ls~--~~eiLv~~c~Y~GTGdvl~ 597 (881)
T COG5110 524 TSLILQTFVERGKI-ESETQWFRFLALGLASLFYGRKDQVDDVEETIMAI-EGA--LSK--HEEILVKGCQYVGTGDVLV 597 (881)
T ss_pred HHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHccccchhHHHHHHHHHh-cch--hhh--hHHHHHhhceecccCcHHH
Confidence 22233322222111 11222222222222222334333222233322211 000 000 11112112222222 111
Q ss_pred HHHHHHHHHHHcCCC--chHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH
Q 007863 434 DDKLGALCMQWLKDK--VYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT 511 (587)
Q Consensus 434 ~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~ 511 (587)
.+.++.+.-..-.|. +.+.-......|+.-.-.+|.+.-.+.++-++-.++.=.+..+|...--+++-+...-+
T Consensus 598 Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnP---- 673 (881)
T COG5110 598 IQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNP---- 673 (881)
T ss_pred HHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCc----
Confidence 223333222222222 11111222233333333456554344445444444544577788877777776654222
Q ss_pred HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhh
Q 007863 512 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 512 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~ 544 (587)
.-.++..+.+..+|.+-+|-.+++.+++.+...
T Consensus 674 Qm~vfDtL~r~shd~dl~v~~ntIfamGLiGAG 706 (881)
T COG5110 674 QMNVFDTLERSSHDGDLNVIINTIFAMGLIGAG 706 (881)
T ss_pred chHHHHHHHHhccccchhHHHHHHHHhhccccC
Confidence 135777888889999999999999988877543
No 350
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.10 E-value=59 Score=32.47 Aligned_cols=97 Identities=14% Similarity=0.177 Sum_probs=62.9
Q ss_pred hcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhh----hhchHHHHH
Q 007863 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVL 481 (587)
Q Consensus 406 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~ 481 (587)
+.+++|.+-..++..|..-- .+ ....+-.+.+.+++..+.|..-|+..|..+++.+|..|. .+.+++.++
T Consensus 14 l~~pDWa~NleIcD~IN~~~--~~----~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emV 87 (470)
T KOG1087|consen 14 LAEPDWALNLEICDLINSTE--GG----PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMV 87 (470)
T ss_pred ccCccHHHHHHHHHHHhcCc--cC----cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 45677877666555442111 11 134566677777777778888888888888888887653 366777766
Q ss_pred hhhcC--CccHHHHHHHHHHHHhhcccCh
Q 007863 482 EMINN--PHYLYRMTILQAISLLAPVMGS 508 (587)
Q Consensus 482 ~~l~~--~~~~~r~~a~~~l~~l~~~~~~ 508 (587)
..... ++..||..++..|..-.+.++.
T Consensus 88 k~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 88 KRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred hccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 66543 3567888888877776665443
No 351
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=62.96 E-value=76 Score=27.43 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=20.8
Q ss_pred hchHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 007863 240 AHILPVIVNFSQDKSWRVRYMVANQLYELC 269 (587)
Q Consensus 240 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~ 269 (587)
..++..+.++..++-.+||..|..++..+.
T Consensus 6 ~~~~~~llrqa~EKiDrvR~~A~~~l~~ll 35 (193)
T PF12612_consen 6 QQIIGGLLRQAAEKIDRVREVAGKCLQRLL 35 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555556666666778888888888777
No 352
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=62.21 E-value=90 Score=25.84 Aligned_cols=98 Identities=14% Similarity=0.088 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHH--hChhhhhhchHHHHHhhhcCC--ccHHHHHHHHHHHHhhcccCh---HHHHHhHHHHHHhhc
Q 007863 451 SIRDAAANNVKRLAEE--FGPDWAMQHIVPQVLEMINNP--HYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINAS 523 (587)
Q Consensus 451 ~vr~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~l 523 (587)
+.-..++.++..+.+. .+.+.....++..+....+.+ +..+-+.++..+..+...... ....+--++.+...+
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hL 111 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHL 111 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHH
Confidence 4455566666666653 233334455666666655433 456777888888877764332 112334567888888
Q ss_pred CCCCccHHHHHHHHHHHHHhhhchH
Q 007863 524 KDRVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 524 ~d~~~~vR~~a~~~l~~l~~~~~~~ 548 (587)
++.++.++.+++..+..+..+.+.+
T Consensus 112 q~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 112 QVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCChH
Confidence 8899999999999999888776554
No 353
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=62.00 E-value=2e+02 Score=29.81 Aligned_cols=49 Identities=20% Similarity=0.263 Sum_probs=37.6
Q ss_pred HHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhc
Q 007863 498 AISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 498 ~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~ 546 (587)
++..+...++...-...++..+....-+.++.||..|..+|..+....+
T Consensus 455 ~i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p 503 (552)
T PF14222_consen 455 CIQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKP 503 (552)
T ss_pred HHHHccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCC
Confidence 3333344444444468889999999999999999999999999988763
No 354
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.77 E-value=1.5e+02 Score=27.93 Aligned_cols=142 Identities=15% Similarity=0.145 Sum_probs=69.9
Q ss_pred HHHHhcCC-CChHHHHHHHHHhHHhhhhhchhhHh-----hhhHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhCh---
Q 007863 362 IFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLLS-----QSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGV--- 430 (587)
Q Consensus 362 ~l~~~l~d-~~~~vr~~a~~~l~~i~~~~~~~~~~-----~~~~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~--- 430 (587)
.+..++.| .+..+|..+-.+++-+-...|.+... +...|.+..++. ..++.|-..++-.+..++-..+.
T Consensus 287 tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa 366 (461)
T KOG4199|consen 287 TLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSA 366 (461)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHH
Confidence 34555555 34455544444444444444444322 233455555542 35666766666666665533221
Q ss_pred hhHHHHHHHHHHHHcC-CC-chHHHHHHHHHHHHHHHHhChh--hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhh
Q 007863 431 GFFDDKLGALCMQWLK-DK-VYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEMINNPHYLYRMTILQAISLLA 503 (587)
Q Consensus 431 ~~~~~~l~~~l~~~l~-d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~ 503 (587)
..+..-.-....+.++ .| ...|+..|+..+.+++..-... .....-+..+.......+...+..+-.++..++
T Consensus 367 ~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 367 KAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 1111112223333333 22 2467788888888877643221 011222334444444556667777777776664
No 355
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.27 E-value=29 Score=29.89 Aligned_cols=88 Identities=16% Similarity=0.107 Sum_probs=64.8
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcc---cChH
Q 007863 435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV---MGSE 509 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~---~~~~ 509 (587)
..++|.+...+.+.+..-|-.|-+-+..+....|... ...+++..+...+...+.++...++++|..+... +|..
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~a 192 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAA 192 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchh
Confidence 4578888888888888888888888888877766442 2356666677778888999999999999888753 3443
Q ss_pred --HHHHhHHHHHHhh
Q 007863 510 --ITCSQLLPVVINA 522 (587)
Q Consensus 510 --~~~~~~l~~l~~~ 522 (587)
.|..+++|.+..+
T Consensus 193 LVPfYRQlLp~~n~~ 207 (262)
T KOG3961|consen 193 LVPFYRQLLPVLNTF 207 (262)
T ss_pred hhhHHHHhhhhhhhh
Confidence 4677788876543
No 356
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=59.28 E-value=65 Score=28.12 Aligned_cols=30 Identities=23% Similarity=0.202 Sum_probs=17.1
Q ss_pred chHHHHHHhcCCChHHHHHHHHHhHHHHHH
Q 007863 280 DVVPAYVRLLRDNEAEVRIAAAGKVTKICR 309 (587)
Q Consensus 280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 309 (587)
.++++.-.+++|.+.-|+++.-.+|..+++
T Consensus 154 ~if~i~E~~l~d~e~fV~KAigWaLrq~~k 183 (222)
T COG4912 154 EIFEIIELLLGDKEFFVQKAIGWALRQIGK 183 (222)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHHh
Confidence 455555555555555555555555555555
No 357
>COG2733 Predicted membrane protein [Function unknown]
Probab=58.79 E-value=1.8e+02 Score=28.09 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=17.4
Q ss_pred HhcCCCcHHHHHHHHHHHHhhhhhh
Q 007863 326 ELSSDSSQHVRSALATVIMGMAPIL 350 (587)
Q Consensus 326 ~~~~d~~~~vr~~a~~~l~~l~~~~ 350 (587)
.-.++++..+|...++++..+++.+
T Consensus 308 ~D~e~~~s~l~~~l~~~~~~~Ge~l 332 (415)
T COG2733 308 EDYESEDSMLRKRLARAVQSVGEEL 332 (415)
T ss_pred hcccCchhHHHHHHHHHHHHHHHHH
Confidence 3346677788888888777776554
No 358
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=58.47 E-value=1.7e+02 Score=32.52 Aligned_cols=126 Identities=14% Similarity=0.142 Sum_probs=69.8
Q ss_pred ccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCC--chHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhc
Q 007863 212 QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL 289 (587)
Q Consensus 212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l 289 (587)
.|.+-.-+..|++.+..+..... ...|.+.+.|+ -+++|..|+.+|...+.....=...+.++.+|....
T Consensus 653 ~drDVvAQ~EAI~~le~~p~~~s--------~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~f 724 (1180)
T KOG1932|consen 653 QDRDVVAQMEAIESLEALPSTAS--------RSALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKF 724 (1180)
T ss_pred hcccHHHHHHHHHHHHcCCcchh--------HHHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHh
Confidence 55566667777777776544322 25566666665 589999999999988754322122445677776654
Q ss_pred CCCh---------HH-----HHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcC--C------CcHHHHHHHHHHHHhhh
Q 007863 290 RDNE---------AE-----VRIAAAGKVTKICRILNPELAIQHILPCVKELSS--D------SSQHVRSALATVIMGMA 347 (587)
Q Consensus 290 ~d~~---------~~-----vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~--d------~~~~vr~~a~~~l~~l~ 347 (587)
.+.+ .. |+.+.-.++..+-..-|.- -+.+.+.+.+++. | ++...|.+.+++++...
T Consensus 725 c~k~stIpKsNnF~~~q~Yfvq~~iP~a~a~lR~~~g~c--p~~V~~FlLdLlkyNDNs~N~YSD~~y~a~LIesl~~~l 802 (1180)
T KOG1932|consen 725 CSKDSTIPKSNNFSNFQEYFVQCAIPVAFASLRGREGKC--PKEVKAFLLDLLKYNDNSFNSYSDDYYRASLIESLVESL 802 (1180)
T ss_pred ccccCCCCCcCccccHHHHHHHHhhHHHHHHhccccCCC--hHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHhhhc
Confidence 3221 11 3444333344333222211 1334455555542 2 23567888888777654
No 359
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=58.25 E-value=28 Score=24.28 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=32.5
Q ss_pred CCCCCcccHHHHHHHhcCccHHHHHHHhhcHHHHHHHh
Q 007863 3 MIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARAL 40 (587)
Q Consensus 3 ~~~~~~~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~ 40 (587)
+++..=|++.+++.-..|..+..|..|++.|+.+....
T Consensus 33 ~p~~aGYTi~El~~L~RSsv~~QR~~al~~L~~Il~~~ 70 (73)
T PF08620_consen 33 DPEAAGYTIQELFHLSRSSVPSQRCIALQTLGRILYRA 70 (73)
T ss_pred CCCcCCcCHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 45556789999999999999999999999998876544
No 360
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=58.14 E-value=93 Score=26.55 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=31.6
Q ss_pred chhHHHHHHHHHHHHhcccC-hhh--hhhchHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 007863 215 QDSVRLLAVEGCGALGKLLE-PQD--CVAHILPVIVNFSQDKSWRVRYMVANQLYELC 269 (587)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~-~~~--~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~ 269 (587)
+......++.|+..+...-. -+. ..+..+..+...+..++..+|..+++.|..++
T Consensus 129 ~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 129 DIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 34556667777776655321 111 12446666777777777777777777777654
No 361
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=58.00 E-value=1e+02 Score=25.03 Aligned_cols=74 Identities=8% Similarity=-0.022 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHH-HHHhccc---CchhHHHHHHHHHHHHhcc
Q 007863 162 TELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSI-FEELTQD---DQDSVRLLAVEGCGALGKL 232 (587)
Q Consensus 162 ~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~~~----~~~~i~~~-l~~l~~d---~~~~vr~~a~~~l~~l~~~ 232 (587)
+..+..+.+-+. +.++.|...++..|..+++++|..- ....++.. +.+++++ .+..|+.-..+.+...+..
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 344444444444 5688898889999999999887521 11234443 5555543 2346777777777766665
Q ss_pred cCh
Q 007863 233 LEP 235 (587)
Q Consensus 233 ~~~ 235 (587)
+..
T Consensus 117 f~~ 119 (141)
T cd03565 117 FRG 119 (141)
T ss_pred hCC
Confidence 543
No 362
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=57.80 E-value=3.4e+02 Score=31.02 Aligned_cols=69 Identities=16% Similarity=0.045 Sum_probs=42.5
Q ss_pred hHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC-CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHh
Q 007863 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 310 (587)
Q Consensus 242 l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 310 (587)
+++.....|-..++.|-.....++..+....+. ......++.+..-.+.|++.+||..|+..|..+-..
T Consensus 504 Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~R 573 (1120)
T PF14228_consen 504 LLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIRSKAMQLLRALEER 573 (1120)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 566666666666766655555554444322111 111224566656667889999999999999887543
No 363
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.88 E-value=1.8e+02 Score=27.51 Aligned_cols=142 Identities=11% Similarity=0.109 Sum_probs=76.4
Q ss_pred HHHHHHcCC-CchHHHHHHHHHHHHHHHHhChhhh-----hhchHHHHHhhh-c-CCccHHHHHHHHHHHHhhcccChH-
Q 007863 439 ALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWA-----MQHIVPQVLEMI-N-NPHYLYRMTILQAISLLAPVMGSE- 509 (587)
Q Consensus 439 ~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~~~~~l~~~l-~-~~~~~~r~~a~~~l~~l~~~~~~~- 509 (587)
..+++++.| ....+|..+-.++..+-..-|.+.. ...-.+.+..++ . ..++.+-+.++.++..++-..+..
T Consensus 286 ~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhs 365 (461)
T KOG4199|consen 286 DTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHS 365 (461)
T ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchH
Confidence 345566666 4556676665566555554454431 233344444331 1 234556666666666665433221
Q ss_pred --HHHHhHHHHHHhhc-CCC-CccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007863 510 --ITCSQLLPVVINAS-KDR-VPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSK 580 (587)
Q Consensus 510 --~~~~~~l~~l~~~l-~d~-~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l 580 (587)
.+....-...+..+ ..| ...|..++++.+.+++..-... .+...=.+.|........++++..|..||-.+
T Consensus 366 a~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 366 AKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 11122222233322 233 4678899999999997664322 22233344555555667888888888888654
No 364
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=55.46 E-value=1.7e+02 Score=26.83 Aligned_cols=167 Identities=14% Similarity=0.167 Sum_probs=92.5
Q ss_pred hhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCccc----------chHHHHHHhcCCCh----HHHHHHHHHhH
Q 007863 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS----------DVVPAYVRLLRDNE----AEVRIAAAGKV 304 (587)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~----------~l~~~l~~~l~d~~----~~vr~~a~~~l 304 (587)
.+.+.+.+.+.+.... .-..+.+.+..+...-....... ..+|.+...+++++ ...-..++..|
T Consensus 62 f~Glq~Ll~KGL~Ss~--t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 62 FEGLQPLLLKGLRSSS--TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred chhHHHHHhCccCCCC--cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 4557777777665543 22345566666654322111110 24666666666666 13334556788
Q ss_pred HHHHHhhCHHHHHHhHHHHHh-HhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhH
Q 007863 305 TKICRILNPELAIQHILPCVK-ELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 383 (587)
Q Consensus 305 ~~l~~~~~~~~~~~~~~~~l~-~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 383 (587)
..+++.-+.... ..++..+. .-.++.+..++..+ ..+.+.+.++. .-.++-.+..++...-+.+|..+...|.
T Consensus 140 a~~a~~~~~~~L-a~il~~ya~~~fr~~~dfl~~v~----~~l~~~f~P~~-~~~~l~~Ll~lL~n~~~w~~~~~L~iL~ 213 (262)
T PF14225_consen 140 AQVAEAQGLPNL-ARILSSYAKGRFRDKDDFLSQVV----SYLREAFFPDH-EFQILTFLLGLLENGPPWLRRKTLQILK 213 (262)
T ss_pred HHHHHhCCCccH-HHHHHHHHhcCCCCHHHHHHHHH----HHHHHHhCchh-HHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 888865444332 33333332 22234333333332 23333332221 2345667888888888999999999999
Q ss_pred Hhhhhhchh-hHhhhhHHHHHHHhcCCCcHH
Q 007863 384 QVNQVIGID-LLSQSLLPAIVELAEDRHWRV 413 (587)
Q Consensus 384 ~i~~~~~~~-~~~~~~~~~l~~~~~~~~~~v 413 (587)
.+.+..... .....++..+.++++.+.|.-
T Consensus 214 ~ll~~~d~~~~~~~dlispllrlL~t~~~~e 244 (262)
T PF14225_consen 214 VLLPHVDMRSPHGADLISPLLRLLQTDLWME 244 (262)
T ss_pred HHhccccCCCCcchHHHHHHHHHhCCccHHH
Confidence 888766422 133456777777787777764
No 365
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.45 E-value=52 Score=28.46 Aligned_cols=86 Identities=17% Similarity=0.179 Sum_probs=51.4
Q ss_pred HHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh--hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCccc
Q 007863 202 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS 279 (587)
Q Consensus 202 ~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~ 279 (587)
..+|.+...+.+.+...|..|...+..+.-..++ -...+.++.-++..+...+.+|...+++.|..+....+ ....
T Consensus 114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~--~vG~ 191 (262)
T KOG3961|consen 114 PYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVG--CVGA 191 (262)
T ss_pred HHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--ccch
Confidence 4566666666555555555555555544433332 12355666777777888888888888888888765433 1123
Q ss_pred chHHHHHHhc
Q 007863 280 DVVPAYVRLL 289 (587)
Q Consensus 280 ~l~~~l~~~l 289 (587)
.++|++.+++
T Consensus 192 aLVPfYRQlL 201 (262)
T KOG3961|consen 192 ALVPFYRQLL 201 (262)
T ss_pred hhhhHHHHhh
Confidence 4556665544
No 366
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=54.12 E-value=54 Score=22.93 Aligned_cols=53 Identities=9% Similarity=0.060 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhh-hchHHHH-HhHHHHHHHh-cCCCCccHHHHHHHHHHHHHHH
Q 007863 531 KFNVAKVLQSLIPI-VDQSVVE-KSIRPCLVEL-SEDPDVDVRFFATQALQSKDQV 583 (587)
Q Consensus 531 R~~a~~~l~~l~~~-~~~~~~~-~~i~~~l~~l-~~d~~~~Vr~~a~~al~~l~~~ 583 (587)
.+.++.+++.+... .+...+. ..+++.+.++ .+.+...||-.+..+|+.+++.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 46788999999765 3334333 3688888885 4578899999999999988764
No 367
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=53.18 E-value=1.9e+02 Score=26.65 Aligned_cols=63 Identities=32% Similarity=0.352 Sum_probs=44.3
Q ss_pred CCCCcccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhccc
Q 007863 4 IDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVF 74 (587)
Q Consensus 4 ~~~~~~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~ 74 (587)
+++-+.-+.+|+-.+..+|++.| ...+.++.. ......|+|.|.+..+ ++.+...+.+.|-.+
T Consensus 8 g~dcl~~LkdL~r~lr~dd~~~~-~v~r~lg~~------~iv~~DLiPiL~~~~~-~~~l~~~~l~LLV~L 70 (266)
T PF04821_consen 8 GDDCLECLKDLKRFLRRDDEDQR-DVRRQLGEW------NIVQKDLIPILISYKD-DDKLFLACLRLLVNL 70 (266)
T ss_pred CHhHHHHHHHHHHHHHHhCcchH-HHHHHHHHh------chhhhhHHHHHHhccC-chHHHHHHHHHHHHh
Confidence 45666778899999999999888 555555432 2345689999988755 556666777776555
No 368
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=52.49 E-value=1.3e+02 Score=24.85 Aligned_cols=110 Identities=12% Similarity=0.085 Sum_probs=61.0
Q ss_pred hhhhhchHHHHHhhhcCCcc------HHHHHHHHHHHHhhcc--cChHH----HHHhHHHHHHhhcCCCCccHHHHHHHH
Q 007863 470 DWAMQHIVPQVLEMINNPHY------LYRMTILQAISLLAPV--MGSEI----TCSQLLPVVINASKDRVPNIKFNVAKV 537 (587)
Q Consensus 470 ~~~~~~~~~~l~~~l~~~~~------~~r~~a~~~l~~l~~~--~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~ 537 (587)
+|+...=++.+.++..+... ..-..++.++..+.++ ++.+. |..++...+..-. .++++-..++..
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~--~d~~i~q~sLaI 83 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSA--MDASILQRSLAI 83 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHcccc--ccchHHHHHHHH
Confidence 33344445555565555432 3344556666666653 23232 3444444443211 257888889999
Q ss_pred HHHHHhhhch--HHHHH-hHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863 538 LQSLIPIVDQ--SVVEK-SIRPCLVELSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 538 l~~l~~~~~~--~~~~~-~i~~~l~~l~~d~~~~Vr~~a~~al~~l~ 581 (587)
|..++..-+. ..+.+ --++.|...+.+++++++.+|..-+-.+-
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9888765322 11112 22566666667788888888777665543
No 369
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=51.42 E-value=3e+02 Score=28.58 Aligned_cols=286 Identities=11% Similarity=0.065 Sum_probs=133.2
Q ss_pred chhHHHHHHHHHHHHHHhhcCh----h-------hHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH-HHHHHH
Q 007863 98 EETCVRDKAVESLCRIGSQMRE----Q-------DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA-LKTELR 165 (587)
Q Consensus 98 ~~~~vr~~a~~~l~~l~~~~~~----~-------~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~-~~~~l~ 165 (587)
.+..++.+.++.+..+..-+.. + ++...+.|.+.++.... ..-..+.-+...+.-..+++ ..+.+.
T Consensus 143 ~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~--khw~~afPL~t~lLCvS~~e~F~~~W~ 220 (552)
T PF14222_consen 143 KKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKP--KHWNVAFPLVTTLLCVSPKEFFLSNWL 220 (552)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCc--chhhhHHHHHHHHHhcCcHHHHHHHHH
Confidence 4666888888888886543211 1 12233455555555442 11222444544444444444 445555
Q ss_pred -HHHHHhc-CCCCHHHHHHHHHHHHHHHHHHh-----h--hhhHHHHHHHHHHhcccC-------chhHHHHHHHHHHHH
Q 007863 166 -TIYRQLC-QDDMPMVRRSAATNLGKFAATVE-----A--AHLKSEIMSIFEELTQDD-------QDSVRLLAVEGCGAL 229 (587)
Q Consensus 166 -~~l~~l~-~~~~~~vR~~a~~~l~~l~~~~~-----~--~~~~~~i~~~l~~l~~d~-------~~~vr~~a~~~l~~l 229 (587)
.++..+. +-.+...|..+..++..+....= + ......+-+++..++..+ +...-..-++.+..+
T Consensus 221 ~~~i~~~~~klKdk~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~~kk~~i~~D~~~~~~lv~ii~~I 300 (552)
T PF14222_consen 221 PSLIESLISKLKDKETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPKGKKGWIPRDPEPLNPLVQIIRFI 300 (552)
T ss_pred HHHHHHHHhhcCChhhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccCCCCcccCCChhhhhhHHHHHHhH
Confidence 2554332 22344888889999888765322 1 223333444444333221 112222333344444
Q ss_pred hcccChhhhhhchHHHHHHhcC-----CCchHHHHHHHHHHHHHHHHhCCCCcccc---------------------hHH
Q 007863 230 GKLLEPQDCVAHILPVIVNFSQ-----DKSWRVRYMVANQLYELCEAVGPEPTRSD---------------------VVP 283 (587)
Q Consensus 230 ~~~~~~~~~~~~l~~~l~~~~~-----d~~~~vR~~a~~~l~~l~~~~~~~~~~~~---------------------l~~ 283 (587)
+..-.+-...+.++|++..-.. .-+|+--..+++++-.+..........+. .++
T Consensus 301 ~~~~~df~~~~iI~~LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~~~e~~e~p~~p~~~~~~~~~~~~~~~~~~~~~l~ 380 (552)
T PF14222_consen 301 GYKHLDFAFRNIIFPLLNVSFNGSSLENLNPERMIIGIRAFLAILSDLEQKEKPPPPPPTSDPSGNTLRVKYTPSNEYLS 380 (552)
T ss_pred hhhCcchHHHHHHHHHHccccccccccccChhHHHHHHHHHHHHHHhhccCCCCCCCCCcCCCCCcccccccCccccccc
Confidence 3332222223345555544332 22466566667777777766543221110 111
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHHhh----CHHHHHHhHHHHH--------------hHhcCCCcH--HHHHHHHHHH
Q 007863 284 AYVRLLRDNEAEVRIAAAGKVTKICRIL----NPELAIQHILPCV--------------KELSSDSSQ--HVRSALATVI 343 (587)
Q Consensus 284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~~~~~~~~~~~~l--------------~~~~~d~~~--~vr~~a~~~l 343 (587)
.....++.-...-.....+++.+...+ |.....+.-...- .+..++... .+=.++++++
T Consensus 381 -~~~~~~~~i~~~~~~~~~~l~~il~~cD~~~G~~~~~~~~~~~~~~~t~~~~f~f~~~~d~~~~~~~~~~Lf~t~i~ai 459 (552)
T PF14222_consen 381 -NEIAKNSGIREYYEEFCRALGKILRLCDNTFGSQLWLDEKQSSSKPKTPFSSFSFGRNDDMVTDQKPQLDLFRTCIQAI 459 (552)
T ss_pred -chhhccccHHHHHHHHHHHHHHHHHHHHHHhchhhccCcccccCCCCCCcccccccccccccccccchhHHHHHHHHHc
Confidence 001111111222233444444444433 3321111100000 001111111 2222333333
Q ss_pred HhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhh
Q 007863 344 MGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389 (587)
Q Consensus 344 ~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~ 389 (587)
..+ ++.......++.++....-..++.|+..+..+|..++...
T Consensus 460 Prc---L~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~ 502 (552)
T PF14222_consen 460 PRC---LPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDK 502 (552)
T ss_pred ccc---CCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcC
Confidence 332 2333344677888888888899999999999999998776
No 370
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=51.30 E-value=4e+02 Score=29.90 Aligned_cols=131 Identities=18% Similarity=0.176 Sum_probs=62.7
Q ss_pred HHHHHhHHHHHHHhcCCCCh-----HHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 007863 353 DATIEQLLPIFLSLLKDEFP-----DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (587)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~~~-----~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 427 (587)
..+...++.-+..++..+.+ ..-..|..+|-..-+.+....-.=..+|.+...+..++...-..+++.+..++..
T Consensus 1998 k~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen 2077 (2235)
T KOG1789|consen 1998 KLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSEN 2077 (2235)
T ss_pred HHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhc
Confidence 34455555555555554432 3344444443332222221110114577777777766655557778888777653
Q ss_pred hCh-hhH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh----hhhchHHHHHhhhc
Q 007863 428 LGV-GFF--DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW----AMQHIVPQVLEMIN 485 (587)
Q Consensus 428 ~~~-~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~~~~~l~~~l~ 485 (587)
-.- +-. .+.+-+ ++..+.. ....-.-|++++..+......+. ..-.++|.+..++.
T Consensus 2078 ~~C~~AMA~l~~i~~-~m~~mkK-~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd 2140 (2235)
T KOG1789|consen 2078 QFCCDAMAQLPCIDG-IMKSMKK-QPSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLD 2140 (2235)
T ss_pred cHHHHHHhccccchh-hHHHHHh-cchHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhc
Confidence 110 000 011122 2222221 11223467788877776544332 23457777777653
No 371
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=50.39 E-value=2.3e+02 Score=27.02 Aligned_cols=146 Identities=12% Similarity=0.060 Sum_probs=93.7
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh----h-----hhhchHHHHHhhhc-CCc---------cHHHHHHHHH
Q 007863 438 GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD----W-----AMQHIVPQVLEMIN-NPH---------YLYRMTILQA 498 (587)
Q Consensus 438 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~-----~~~~~~~~l~~~l~-~~~---------~~~r~~a~~~ 498 (587)
+..+.+.+......+...+++.+..++...|.. . +....+|.+...-. +.+ ..+|..++..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 667778888888888888889988888744432 1 12334444443211 111 2899999999
Q ss_pred HHHhhcccChHHH-----HHhHHHHHHhhcCCCCccHHHHHHHHHHH-HHhh--hc----hHHHHHhHHHHHHHhcCCCC
Q 007863 499 ISLLAPVMGSEIT-----CSQLLPVVINASKDRVPNIKFNVAKVLQS-LIPI--VD----QSVVEKSIRPCLVELSEDPD 566 (587)
Q Consensus 499 l~~l~~~~~~~~~-----~~~~l~~l~~~l~d~~~~vR~~a~~~l~~-l~~~--~~----~~~~~~~i~~~l~~l~~d~~ 566 (587)
+-.+....+.... .+.++..+.+.+....+.+-...+.++.. +... +. ...|.+..+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 9888876655421 23446777777776666666666666653 3322 11 13566777888888776666
Q ss_pred c----cHHHHHHHHHHHHHHH
Q 007863 567 V----DVRFFATQALQSKDQV 583 (587)
Q Consensus 567 ~----~Vr~~a~~al~~l~~~ 583 (587)
+ .|+..+-+-|-.++--
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred CcccchHHHHHHHHHHHHhcC
Confidence 6 8888888887777643
No 372
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=49.24 E-value=1.4e+02 Score=23.98 Aligned_cols=94 Identities=12% Similarity=0.022 Sum_probs=48.8
Q ss_pred CcHHHHHHHHHHHHhhhhhhchHHHH--HhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhH--hhhhHHHHHHHh
Q 007863 331 SSQHVRSALATVIMGMAPILGKDATI--EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELA 406 (587)
Q Consensus 331 ~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~--~~~~~~~l~~~~ 406 (587)
.+...+......+..++-.-....+. -.++..+...+..++......++.+++.++..-....+ ...-+|.+...+
T Consensus 29 t~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~l 108 (173)
T KOG4646|consen 29 TNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVL 108 (173)
T ss_pred ccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeec
Confidence 34444444444555554221111111 23566777777888888888888888877744322211 122245555555
Q ss_pred cCCCcHHHHHHHHHHHHH
Q 007863 407 EDRHWRVRLAIIEYIPLL 424 (587)
Q Consensus 407 ~~~~~~vr~~~~~~l~~l 424 (587)
.++...+-..++..+..+
T Consensus 109 ssp~e~tv~sa~~~l~~l 126 (173)
T KOG4646|consen 109 SSPPEITVHSAALFLQLL 126 (173)
T ss_pred CCChHHHHHHHHHHHHHh
Confidence 666555544444444433
No 373
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=48.16 E-value=4.7e+02 Score=29.90 Aligned_cols=288 Identities=18% Similarity=0.190 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhc-------c-----cCchhHHHHHHHHHH
Q 007863 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELT-------Q-----DDQDSVRLLAVEGCG 227 (587)
Q Consensus 160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~-------~-----d~~~~vr~~a~~~l~ 227 (587)
....++.++..++...+..+|.++.-+||..-..+-+ ...+.+.+.+...- + ...+.+|......+.
T Consensus 193 SaR~LFk~ivPlLks~~~~~r~AaVlaLG~~n~~v~~-~LleeL~~~i~~~~~e~e~r~~~k~rr~Rrd~LR~ev~hVl~ 271 (1120)
T PF14228_consen 193 SARELFKLIVPLLKSESSSFRDAAVLALGSINLNVYR-TLLEELQSYIEECNSEAESRPKWKRRRRRRDRLRTEVTHVLR 271 (1120)
T ss_pred CHHHHHHHHhhhhccCcHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHHH
Confidence 4467888888888999999999999999886554332 22233333322211 0 012457777777787
Q ss_pred HHhcccChhh------hhhchHHHHHH---hcC----CCch---HHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC
Q 007863 228 ALGKLLEPQD------CVAHILPVIVN---FSQ----DKSW---RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD 291 (587)
Q Consensus 228 ~l~~~~~~~~------~~~~l~~~l~~---~~~----d~~~---~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 291 (587)
.+++.+.+.. ....++.++.. .+. +.+| .+|...+..+..++..+.... .+.+
T Consensus 272 llAe~l~p~~l~~d~~L~~~lv~fIk~~~~fL~~~~~q~~~elQ~LR~~fc~ll~~l~~~~~~~~---------se~f-- 340 (1120)
T PF14228_consen 272 LLAEFLKPGVLNDDWILRNNLVEFIKETKQFLEDEEVQNDWELQRLRYHFCGLLRNLAVGIVKAK---------SEWF-- 340 (1120)
T ss_pred HHHhhcChhhccchHHHHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHhhhch---------hhcC--
Confidence 7777776421 11122333322 122 2345 556666665555554432110 1111
Q ss_pred ChHHHHHHHHHhHHHHHHhhCHH-------HHHHhH---HHHHhHhcCCC-------------cHHHHHHHHHHHHhhhh
Q 007863 292 NEAEVRIAAAGKVTKICRILNPE-------LAIQHI---LPCVKELSSDS-------------SQHVRSALATVIMGMAP 348 (587)
Q Consensus 292 ~~~~vr~~a~~~l~~l~~~~~~~-------~~~~~~---~~~l~~~~~d~-------------~~~vr~~a~~~l~~l~~ 348 (587)
..+.|+.+...+...+...+.. .+...+ .....+-.+|. -...|.+|+.++..++.
T Consensus 341 -pfe~RkslF~l~~eWCGy~~~~~~~~~~s~~rre~~r~~~~~~~r~kd~~~~~~~~~~Ie~~~~~L~~aAl~AMAaLc~ 419 (1120)
T PF14228_consen 341 -PFEARKSLFNLFEEWCGYSPSQWGQDGRSDYRREVERYKSSQLQREKDSRERATAEMEIEEQKRNLRTAALSAMAALCG 419 (1120)
T ss_pred -CHHHHHHHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2467888888888877654311 111111 11111112221 13566777777776652
Q ss_pred --hhchH--HHHHhHHHHHHHhcCCCChHH---------HH----------------------------HHHHHhHHhhh
Q 007863 349 --ILGKD--ATIEQLLPIFLSLLKDEFPDV---------RL----------------------------NIISKLDQVNQ 387 (587)
Q Consensus 349 --~~~~~--~~~~~l~~~l~~~l~d~~~~v---------r~----------------------------~a~~~l~~i~~ 387 (587)
.+... .....++.-+..+++..+..+ |. -+-.+|..+..
T Consensus 420 GPif~~~~~~~~grmlsWId~if~s~s~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgr~AL~nLL~ 499 (1120)
T PF14228_consen 420 GPIFDDNASKPSGRMLSWIDSIFNSPSDRMPIGYSPLDPRTMSYSKHAGEGPRGATGRDKQKSSHARHSLGRRALKNLLE 499 (1120)
T ss_pred CCccccchhcccchHHHHHHHHHcCCCCCCcCCCCCCCccCcccccccCcccccccchhhhccchHHHHHHHHHHHHHHH
Confidence 11111 011233444444444321111 10 01111222211
Q ss_pred hhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Q 007863 388 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (587)
Q Consensus 388 ~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 466 (587)
. ...+++...+.....+..+.......+..+....+ +..-...++.+.+-.+.|++.+||..|++.|..+-..
T Consensus 500 ~------N~dLl~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~R 573 (1120)
T PF14228_consen 500 H------NPDLLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIRSKAMQLLRALEER 573 (1120)
T ss_pred h------hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 1 01233333333344555555444444433332111 1112346788888889999999999999999887654
No 374
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=48.06 E-value=2.1e+02 Score=25.73 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=50.6
Q ss_pred hhhHHHHHHhhcCC-CCcchhhHHhhhhhhccCCCHHH-----HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 007863 124 EHFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEAL-----KTELRTIYRQLCQDDMPMVRRSAATNLGKFA 191 (587)
Q Consensus 124 ~~ll~~~~~l~~~~-~~~~r~~a~~l~~~~~~~~~~~~-----~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~ 191 (587)
-++.||+.....+. ...-|..+.+.++.+.+..+.++ ..+++|++...++.++..-+..|...++++.
T Consensus 123 lylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 123 LYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKIL 196 (293)
T ss_pred hhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 45667776554444 45678999999999988887663 3477889999988888888877777777664
No 375
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=47.96 E-value=1.7e+02 Score=24.60 Aligned_cols=145 Identities=10% Similarity=0.078 Sum_probs=66.5
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhh--hhchHHHHHhhhc--CCccHHHHHHHHHHHHhhcccChH---
Q 007863 437 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVLEMIN--NPHYLYRMTILQAISLLAPVMGSE--- 509 (587)
Q Consensus 437 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~~l~~~l~--~~~~~~r~~a~~~l~~l~~~~~~~--- 509 (587)
+.|+++.+++... +++...+.|+.+++....+.+ .+.-.+.+.+.+. +.+.. ..|...+..+...+..+
T Consensus 4 ikplLIsCL~~q~--~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~~e~--~kA~~IF~~L~~~l~~efl~ 79 (174)
T PF04510_consen 4 IKPLLISCLTMQE--TKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSENEP--VKAFHIFICLPMPLYGEFLI 79 (174)
T ss_pred hHHHHHHHHHhhc--ccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhccch--HHHHHHHHhCCchhhhhHHH
Confidence 5567777765322 234455555555554433321 1222223333211 12222 34556666666222222
Q ss_pred HHHHhHHHHHHhhcCCCC-ccHHHHHHHHHHHHH---hhhch---HHHHHhHHHHHHHhcCCCCcc--HHHHHHHHHHHH
Q 007863 510 ITCSQLLPVVINASKDRV-PNIKFNVAKVLQSLI---PIVDQ---SVVEKSIRPCLVELSEDPDVD--VRFFATQALQSK 580 (587)
Q Consensus 510 ~~~~~~l~~l~~~l~d~~-~~vR~~a~~~l~~l~---~~~~~---~~~~~~i~~~l~~l~~d~~~~--Vr~~a~~al~~l 580 (587)
++.+.++|.+.+.+.+|. ..+....+..-+.++ +-++. ......+++.+.+-..+-... =...+.+|+..+
T Consensus 80 ~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~~ 159 (174)
T PF04510_consen 80 PFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRDF 159 (174)
T ss_pred HHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 356778888888888873 455433333333322 22221 133344555544432221111 114566666666
Q ss_pred HHHhh
Q 007863 581 DQVMM 585 (587)
Q Consensus 581 ~~~~~ 585 (587)
.+.+.
T Consensus 160 e~~v~ 164 (174)
T PF04510_consen 160 ESFVS 164 (174)
T ss_pred HHHHH
Confidence 65543
No 376
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=47.71 E-value=2.7e+02 Score=26.89 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHhcccC
Q 007863 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA------AHLKSEIMSIFEELTQDD 214 (587)
Q Consensus 161 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~------~~~~~~i~~~l~~l~~d~ 214 (587)
...++|-+..++......+|.++.+.+..+...... ..-.+.++..+..+.+|.
T Consensus 242 ~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~lr~latds 301 (427)
T KOG2842|consen 242 DAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTLRDLATDS 301 (427)
T ss_pred HHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHHHHHHHhh
Confidence 334566677777777777777777777766665442 112345666666666554
No 377
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=46.80 E-value=2.3e+02 Score=25.80 Aligned_cols=109 Identities=15% Similarity=0.103 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhChhh----hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhc-ccCh--
Q 007863 437 LGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAP-VMGS-- 508 (587)
Q Consensus 437 l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~----~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~-~~~~-- 508 (587)
+.|.+...-+.. ...+|-.++..+|.+++.-..+. ....++|...+.+..++...|..|...+..+.. ..|-
T Consensus 96 LyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~y 175 (262)
T PF04078_consen 96 LYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNY 175 (262)
T ss_dssp GHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHH
T ss_pred ehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHH
Confidence 455554433332 34678888888888877544442 236788888877777777788888888877764 2221
Q ss_pred -----HHH--HHhHHHH-HHhhcCCCCccHHHHHHHHHHHHHhhh
Q 007863 509 -----EIT--CSQLLPV-VINASKDRVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 509 -----~~~--~~~~l~~-l~~~l~d~~~~vR~~a~~~l~~l~~~~ 545 (587)
+.| ...++.. +..+..++++.+=.+.+++...+...-
T Consensus 176 iC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 176 ICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 111 1222222 223445566666667777777666553
No 378
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=46.80 E-value=2.2e+02 Score=25.61 Aligned_cols=52 Identities=13% Similarity=0.166 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHHHHHHhhChhhHH----HHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 007863 411 WRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLKDKVYSIRDAAANNVKR 462 (587)
Q Consensus 411 ~~vr~~~~~~l~~l~~~~~~~~~~----~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 462 (587)
.-.|..++..|+.+.+.-..+... ..++|.+++.+...+..-+..|...++.
T Consensus 139 EyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqK 194 (293)
T KOG3036|consen 139 EYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQK 194 (293)
T ss_pred HHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 344555555555544443333221 2334444444444444444444433333
No 379
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=46.17 E-value=2.6e+02 Score=26.26 Aligned_cols=70 Identities=20% Similarity=0.226 Sum_probs=48.8
Q ss_pred hHHHHHHhhcCCCCcc-HHHHHHHHHHHHHhhhchH---HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHH
Q 007863 514 QLLPVVINASKDRVPN-IKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 583 (587)
Q Consensus 514 ~~l~~l~~~l~d~~~~-vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~ 583 (587)
.++..+...++..+++ .-..|+.=++.++...+.. ...-.....+.++++.+|++||..|.+|+..+...
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 4566677777766666 3345666666666665442 12234667788899999999999999999988653
No 380
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.65 E-value=4.3e+02 Score=28.68 Aligned_cols=106 Identities=8% Similarity=0.001 Sum_probs=50.4
Q ss_pred HhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHH
Q 007863 324 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (587)
Q Consensus 324 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~ 403 (587)
+.+.+....+.-...+...+..+....+...+....+=-+...+.+.+...|...++...+-.+.+..-.....++..+.
T Consensus 29 ldkGlr~~~t~eqpeavvr~~RLFek~PfpifiNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~hln~v~n~aE~lrri~ 108 (970)
T KOG1988|consen 29 LDKGLRSGKTSEQPEAVVRFPRLFEKYPFPIFINSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHLNKVLNGAEFLRRIF 108 (970)
T ss_pred HhhcccccccccchHHHHHHHHHHhhCCchhhhhHHHHHHHHHhccCcHHHHHHHHHHHhhccccchhhhhhhhhhheeE
Confidence 33344433333333333334444333333333332222344445566666666666666654433332222223333333
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhhC
Q 007863 404 ELAEDRHWRVRLAIIEYIPLLASQLG 429 (587)
Q Consensus 404 ~~~~~~~~~vr~~~~~~l~~l~~~~~ 429 (587)
......++.-|..++..++.+...++
T Consensus 109 ~V~hsnDp~aRAllL~ilg~~s~lip 134 (970)
T KOG1988|consen 109 YVDHSNDPVARALLLRILGQLSALIP 134 (970)
T ss_pred EeecCCCHHHHHHHHHHHHHhhhhcc
Confidence 34445566667777777777766554
No 381
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=43.59 E-value=1.9e+02 Score=24.02 Aligned_cols=81 Identities=16% Similarity=0.195 Sum_probs=41.9
Q ss_pred HHHHHHHhhcccChHHH-HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHH
Q 007863 495 ILQAISLLAPVMGSEIT-CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFA 573 (587)
Q Consensus 495 a~~~l~~l~~~~~~~~~-~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a 573 (587)
.+.++..+....+.... ...-+..+++.+..-..++-...+.++.-+++. ...+.+.++-.|.+.+=.++.+.|..|
T Consensus 75 ~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~Al~PLi~~--s~~lrd~lilvLRKamf~r~~~~R~~A 152 (158)
T PF14676_consen 75 YIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLLRALLPLIKF--SPSLRDSLILVLRKAMFSRELDARQMA 152 (158)
T ss_dssp HHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHTT-SSHHHHHHH
T ss_pred HHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHccccHHHHHHH
Confidence 45666666654322200 011112233333333444444444444333322 135667888888998888888999999
Q ss_pred HHHH
Q 007863 574 TQAL 577 (587)
Q Consensus 574 ~~al 577 (587)
+.++
T Consensus 153 v~Gf 156 (158)
T PF14676_consen 153 VNGF 156 (158)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
No 382
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=42.88 E-value=4.7e+02 Score=28.37 Aligned_cols=276 Identities=11% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhh--------hhhchHHHHHhHHHHHHH-h
Q 007863 298 IAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMA--------PILGKDATIEQLLPIFLS-L 366 (587)
Q Consensus 298 ~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~--------~~~~~~~~~~~l~~~l~~-~ 366 (587)
..|+.++..+..++..+ .+.+.++..+.+++.+.+...+..++.++..++ -+++.+.+...+-++... -
T Consensus 74 ~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~~ 153 (819)
T KOG1877|consen 74 KIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHERG 153 (819)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhccc
Q ss_pred cCCCChHHHHHHHHHhHHhh---------hhhchhhHhhhhHHHHHHHhcCCC--------cHH---------------H
Q 007863 367 LKDEFPDVRLNIISKLDQVN---------QVIGIDLLSQSLLPAIVELAEDRH--------WRV---------------R 414 (587)
Q Consensus 367 l~d~~~~vr~~a~~~l~~i~---------~~~~~~~~~~~~~~~l~~~~~~~~--------~~v---------------r 414 (587)
..|.-..+|.+.+.+|..+. ..++.....+.++|.+...+...+ .+. .
T Consensus 154 ~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~~e~~~~~~S~s~~~~~~~~~a~~~~~~p~ 233 (819)
T KOG1877|consen 154 DDDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQSIENLGKRESDSRIRTFSLLAAGDKTSDPK 233 (819)
T ss_pred chhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhcchhhcccccCcccccCccccccCCcccCcc
Q ss_pred HHHHHHHHHHHHhhChh-hHHHHHHHHHHHHcCCCchHHH-HHHHHHHHHHHHHhChhh---hhhchHHHHHhhh-cCCc
Q 007863 415 LAIIEYIPLLASQLGVG-FFDDKLGALCMQWLKDKVYSIR-DAAANNVKRLAEEFGPDW---AMQHIVPQVLEMI-NNPH 488 (587)
Q Consensus 415 ~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr-~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~~l-~~~~ 488 (587)
..+-.++..+...-... .....+-|++..+-...-|..- .-|+.++..+.-.+.... +.+.++.++.... ..+.
T Consensus 234 vla~~cl~~l~~~A~~g~~iR~~l~pl~~~~d~h~~w~p~n~fav~~~~~vi~~iq~q~s~~v~~~li~hLd~~~~~~~~ 313 (819)
T KOG1877|consen 234 VLAERCLRELLGRAKFGTNIRNALKPLLSHLDFHELWTPPNGFAVHVFKIVIYLIQRQYSYFVIQELINHLDNKKLVAKK 313 (819)
T ss_pred hhHHHHHHHhhccccccchHHHHHHHHHhccccceeecCCCccchHHHHHHHHHHhhccchHHHHHHHHHHHhhcccccC
Q ss_pred cHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCcc
Q 007863 489 YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVD 568 (587)
Q Consensus 489 ~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~ 568 (587)
.+.+...+..-..++....-..+.-.++..+..-+.....--+...+......+.......+...+...+... .+..|+
T Consensus 314 ~r~~~~iv~~~~~~i~~~~v~ps~l~i~n~l~rhLR~si~~s~~~~~~~~~~~~~~~~e~~~q~~li~~~~~~-~~~~P~ 392 (819)
T KOG1877|consen 314 PRLGLSIVLVSIALIAATSVGPSVLIIFNDLLRHLRKSISFSDDGNIGLETDNGNYMIEAVVQEALIQLTKKF-ANTLPD 392 (819)
T ss_pred ccccchhHHHHHHHHHhcccchHHHHHHHHHHHHHHhhccccccccCCchhhhhHHHHHHHHHHHHHHHHHhh-cccCch
Q ss_pred HHHHHH
Q 007863 569 VRFFAT 574 (587)
Q Consensus 569 Vr~~a~ 574 (587)
+...++
T Consensus 393 ~q~~~v 398 (819)
T KOG1877|consen 393 YQKMAV 398 (819)
T ss_pred HHHHHH
No 383
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=41.35 E-value=69 Score=24.84 Aligned_cols=33 Identities=6% Similarity=0.001 Sum_probs=21.6
Q ss_pred hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhc
Q 007863 472 AMQHIVPQVLEMINNPHYLYRMTILQAISLLAP 504 (587)
Q Consensus 472 ~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~ 504 (587)
+..-.++.+.+-+.|++..+...|+..+...+.
T Consensus 5 f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~ 37 (115)
T PF14663_consen 5 FEDWGIELLVTQLYDPSPEVVAAALEILEEACE 37 (115)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 344556666666777777777777777666654
No 384
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=41.07 E-value=64 Score=18.80 Aligned_cols=20 Identities=40% Similarity=0.335 Sum_probs=17.4
Q ss_pred cCCCCccHHHHHHHHHHHHH
Q 007863 562 SEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 562 ~~d~~~~Vr~~a~~al~~l~ 581 (587)
.+|+|.-||.+|..++..+.
T Consensus 15 ~~D~D~lvr~hA~~~Le~Le 34 (36)
T PF10304_consen 15 STDNDDLVREHAQDALEELE 34 (36)
T ss_pred HhCCcHHHHHHHHHHHHHHh
Confidence 57889999999999998875
No 385
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=40.03 E-value=4e+02 Score=28.53 Aligned_cols=150 Identities=14% Similarity=0.117 Sum_probs=86.2
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHhChhhhhhch
Q 007863 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI 476 (587)
Q Consensus 398 ~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 476 (587)
-+..+..++.+.+-.+...+-..+......-.. +.++..++.+ ++..+.. ++..++. +... ....+
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~----~~l~~~l~~y~~~t~s~~-------~~~il~~-~~~P-~~K~~ 71 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDRE----PWLVNGLVDYYLSTNSQR-------ALEILVG-VQEP-HDKHL 71 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccch----HHHHHHHHHHHhhcCcHH-------HHHHHHh-cCCc-cHHHH
Confidence 345566666777777666666555444432211 2333333333 2222221 2222222 1111 12446
Q ss_pred HHHHHhhhcCCccHHHHHHHHHHHHhhcccChHH---HHHhHHHHHHhhc-CCCCccHHHHHHHHHHHHHhhhchH--HH
Q 007863 477 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI---TCSQLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQS--VV 550 (587)
Q Consensus 477 ~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~---~~~~~l~~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~~--~~ 550 (587)
+..+-+.+..+ ..|..++..++.+...-+... ....+++.+++++ .|.+..+=..|+.+|..+.+.++.. .+
T Consensus 72 ~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~ 149 (668)
T PF04388_consen 72 FDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPH 149 (668)
T ss_pred HHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHH
Confidence 66666666654 578889999999887544432 2345677777765 4778888899999999999988653 45
Q ss_pred HHhHHHHHHHhc
Q 007863 551 EKSIRPCLVELS 562 (587)
Q Consensus 551 ~~~i~~~l~~l~ 562 (587)
...++.+...++
T Consensus 150 L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 150 LPDLFNIFGRLL 161 (668)
T ss_pred HHHHHHHHHHHH
Confidence 556666666653
No 386
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.77 E-value=1.3e+02 Score=28.82 Aligned_cols=66 Identities=9% Similarity=0.059 Sum_probs=38.6
Q ss_pred hHHHHHhhhcCCccHHHHHHHHHHHHhhcccC-hHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHH
Q 007863 476 IVPQVLEMINNPHYLYRMTILQAISLLAPVMG-SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSL 541 (587)
Q Consensus 476 ~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l 541 (587)
.+..++.+.++++..-|.-+...++......+ ...-...+.+.+..++.|.++.+|..++.+|++.
T Consensus 8 ~~~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~~ 74 (364)
T COG5330 8 TDQDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQC 74 (364)
T ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHhC
Confidence 33444555666666666655555555544444 3334555666666666666666776666666655
No 387
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=39.58 E-value=6.7e+02 Score=29.15 Aligned_cols=349 Identities=12% Similarity=0.085 Sum_probs=155.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHH-HhcccC---chhHHHHHHHHHHHHhcccCh
Q 007863 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAAT-VEAAHLKSEIMSIFE-ELTQDD---QDSVRLLAVEGCGALGKLLEP 235 (587)
Q Consensus 161 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~-~~~~~~~~~i~~~l~-~l~~d~---~~~vr~~a~~~l~~l~~~~~~ 235 (587)
...+++++...+...+..|...+...+..+... ++......++.-... ....+. +...-.....++..+....+.
T Consensus 805 l~~Fv~~l~d~l~~~~e~V~~~tLr~l~~l~~~~L~~~~~~s~lF~~~~~~~~~gs~~~~~el~q~~~k~~t~lI~~~~s 884 (1364)
T KOG1823|consen 805 LVPFVSILCDSLLSIREKVITSTLRNLIDLLRHQLDQIESVSELFKLLARKRHSGSPSTNFELCQDSFKGFTALIAQVGS 884 (1364)
T ss_pred HHhHHHHHHHhhcchhhHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHhcc
Confidence 334455555555566667777777776665542 222222222111111 111111 112333444445555444444
Q ss_pred hhhhhchHHHHHHhc-CCCchHHHHHHHHHHH-HHHHHhCCCC-cccchHHHHHHhc-CCChHHHHHHHHHhHHHHHHhh
Q 007863 236 QDCVAHILPVIVNFS-QDKSWRVRYMVANQLY-ELCEAVGPEP-TRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRIL 311 (587)
Q Consensus 236 ~~~~~~l~~~l~~~~-~d~~~~vR~~a~~~l~-~l~~~~~~~~-~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~ 311 (587)
....+..+..+.... .|....-|...+-.+. .+.. .+-.. ....++..+.+.. .....+.|..|-..+-.+.-.-
T Consensus 885 ~~i~e~~ls~ll~~~~sD~~d~~rq~~~F~l~kAl~~-r~i~~~eL~~imd~v~e~~v~~~~~~~r~qcre~~~~~~~s~ 963 (1364)
T KOG1823|consen 885 VKIKEDVLSYLLARVESDISDPSRQGLAFSLLKALVS-RKIMLPELYEIMDKVRETMVRNHSKEIRLQCREVFYSFLGSK 963 (1364)
T ss_pred eeeeHHHHHHHHHHhccccccchhHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhc
Confidence 333444555444433 3444444444443332 2221 11000 0012222222222 1223445555554443332211
Q ss_pred C-HHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhc
Q 007863 312 N-PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 390 (587)
Q Consensus 312 ~-~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~ 390 (587)
+ .+.+.+..+..+..-.......+|...... .+.....++|...-.++|..+..|..+...+..+.....
T Consensus 964 s~~~k~~~~~V~~l~~~~esg~esvr~~~all---------~e~~~~ffIal~~~~~nDd~~~~r~ma~~~i~~~~~~~d 1034 (1364)
T KOG1823|consen 964 SKLEKQMEFMVDNLLYEVESGRESVRFSPALL---------FEILSNFFIALVLVKINDDEPVCREMASMLIKVLYDKED 1034 (1364)
T ss_pred chhhHHHHHHHHHhhhhhhcccchhcccHHHH---------HHHhhccchhhcccccccchHHHHHHHHHHHHHHhCHhh
Confidence 1 112233334443333334455666222111 122233456666667788888888888888777766655
Q ss_pred hhhHhhhhHHHHHHHh-cCCCcHHHHHHHHHHHHHHHhhChhhHH---------------HHHHHHHHHHcCCCchHHHH
Q 007863 391 IDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFD---------------DKLGALCMQWLKDKVYSIRD 454 (587)
Q Consensus 391 ~~~~~~~~~~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~~~~~~---------------~~l~~~l~~~l~d~~~~vr~ 454 (587)
.+.+ +.+...+..-. .+.... |...+.+.+......|.+... ....|+.-....+..+.+..
T Consensus 1035 ~e~~-~~~~~~l~~~~~~~~~~~-~~~~v~~~~~~~~~~~~e~~~~~~~~~~~lek~~~~~~s~~~~~~~~~~~~~~~lf 1112 (1364)
T KOG1823|consen 1035 NELF-NLLERLLHEWVGVHKRHK-RFILVGATGKAEESIGFELTIQLFVLLSVLEKEIIVEVSDPIEAETEEVLFDKVLF 1112 (1364)
T ss_pred hHHH-hHHHHHHHHHHhhhhhhh-HHHHHHHHHHHHHHHhHHHHHHHhhccceeeeecccccccHHHHHHHHHhhHHHHH
Confidence 4432 22222222221 122211 222255555555444433211 11122222222333344433
Q ss_pred HHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH-HHHHhHHHHHHhhcCC
Q 007863 455 AAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVINASKD 525 (587)
Q Consensus 455 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~~l~~l~~~l~d 525 (587)
..........+..| ...+...+...+..+...+|.++....+.+....+.. .....+.+.++..+.-
T Consensus 1113 s~lt~~t~~ikk~~----f~ki~~~v~~~~l~~~~~v~~s~~~lf~~l~a~~~~~e~~~~~i~~~ll~~L~~ 1180 (1364)
T KOG1823|consen 1113 SWLTLVTENIKKGG----FSKIWSRVVGLLLMPHSWVRLSRAQLFGFLFAISDVSELRLRTIIPLLLAHLDY 1180 (1364)
T ss_pred HHHHHHHHHHHhcc----HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhcccHHHHHHHHhHHHHHHhCCC
Confidence 33333333333222 3556667777766777778888888888887755543 3455666766665543
No 388
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=39.42 E-value=1.9e+02 Score=32.40 Aligned_cols=92 Identities=14% Similarity=0.142 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCC
Q 007863 173 QDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQD 252 (587)
Q Consensus 173 ~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d 252 (587)
.-++.+||..|++.|+.+....- -++.+++++.+.--+.-+.+-||..-..++..+ .+...+.-.+.+.+.|
T Consensus 900 kfPDqeVR~~AVqwi~~ls~DeL-~d~LPQlVQALK~E~yl~S~Lv~FLL~rsl~sl-------~~ah~lYWlLk~~l~d 971 (1639)
T KOG0905|consen 900 KFPDQEVRAHAVQWIARLSNDEL-LDYLPQLVQALKFELYLKSALVQFLLSRSLVSL-------QFAHELYWLLKDALDD 971 (1639)
T ss_pred cCCcHHHHHHHHHHHHhcCcHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHhcch-------HHHHHHHHHHhhcccc
Confidence 44788999999999998764210 123333333333333334556665555555443 2456677777888887
Q ss_pred CchHHHHHHHHHHHHHHHHhCC
Q 007863 253 KSWRVRYMVANQLYELCEAVGP 274 (587)
Q Consensus 253 ~~~~vR~~a~~~l~~l~~~~~~ 274 (587)
....+|.. ..++.+....|+
T Consensus 972 ~qfs~rYq--~ll~aLl~~~gk 991 (1639)
T KOG0905|consen 972 SQFSLRYQ--NLLAALLDCCGK 991 (1639)
T ss_pred ceeehHHH--HHHHHHHHHhCH
Confidence 76667762 344445444443
No 389
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=39.30 E-value=1.4e+02 Score=22.52 Aligned_cols=53 Identities=13% Similarity=0.031 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhcc
Q 007863 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA---HLKSEIMSIFEELTQ 212 (587)
Q Consensus 160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~ 212 (587)
+.+.++..+...+.+-.+.||..+.+.|.-+.++.+++ .....+++-+..++.
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~ 63 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLG 63 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHC
Confidence 34556666667777888999999999999988887764 223344444444444
No 390
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=38.97 E-value=2.3e+02 Score=23.67 Aligned_cols=70 Identities=11% Similarity=0.193 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhh--hhchHHHHHh-hhcCCc--cHHHHHHHHHHHHhhc
Q 007863 435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVLE-MINNPH--YLYRMTILQAISLLAP 504 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~~l~~-~l~~~~--~~~r~~a~~~l~~l~~ 504 (587)
+.+.+.+.+.+..++..+-..+++.+..+...++...- .+.+++.+.. .+..++ .+.|..+++++..+..
T Consensus 72 ~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 72 DDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 45666666666666677777888888888776655321 2445555544 333332 4577888888887775
No 391
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=36.64 E-value=96 Score=23.41 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=28.2
Q ss_pred HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH
Q 007863 511 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 511 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 548 (587)
+.+.++..+...+++-.++||.-+++.|.-+.+.++..
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 45666667777777778888888888888887777655
No 392
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=36.21 E-value=3.8e+02 Score=25.33 Aligned_cols=21 Identities=0% Similarity=0.039 Sum_probs=9.3
Q ss_pred HHHHHhcCCCchHHHHHHHHH
Q 007863 244 PVIVNFSQDKSWRVRYMVANQ 264 (587)
Q Consensus 244 ~~l~~~~~d~~~~vR~~a~~~ 264 (587)
..+.++++..++..|......
T Consensus 23 r~lQ~~l~~~~~~~~~~i~~~ 43 (322)
T cd07920 23 RFLQQKLEEATPEEKELIFDE 43 (322)
T ss_pred HHHHHHhccCCHHHHHHHHHH
Confidence 344444444444444444433
No 393
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=35.16 E-value=5.9e+02 Score=27.29 Aligned_cols=144 Identities=13% Similarity=0.063 Sum_probs=70.5
Q ss_pred hhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCCh-HHHHHHHHHh---HHHHHHhhCHH
Q 007863 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE-AEVRIAAAGK---VTKICRILNPE 314 (587)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~---l~~l~~~~~~~ 314 (587)
.+.....++.+........+.....+|..-. .++.+ ...+.++.+.+.++... ..--..++.+ |....+..+.+
T Consensus 502 k~~~~~aLlrl~~~q~e~akl~~~~aL~~~i-~f~~~-~~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~ 579 (748)
T KOG4151|consen 502 KPGGYEALLRLGQQQFEEAKLKWYHALAGKI-DFPGE-RSYEVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQK 579 (748)
T ss_pred cccHHHHHHHHHHHhchHHHHHHHHHHhhhc-CCCCC-chhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHH
Confidence 3445566666666666666766666666211 11111 12345555555443322 0001111112 22222222222
Q ss_pred HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhH------HHHHHHhcCCCChHHHHHHHHHhHHhh
Q 007863 315 LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQL------LPIFLSLLKDEFPDVRLNIISKLDQVN 386 (587)
Q Consensus 315 ~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l------~~~l~~~l~d~~~~vr~~a~~~l~~i~ 386 (587)
...+..++.+..++.+.++..+.++.+++..+... +..+...+ +|.....+.+.....+.+++.++..|.
T Consensus 580 i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~--~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~ 655 (748)
T KOG4151|consen 580 ILKEKALGKIEELMTEENPALQRAALESIINLLWS--PLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAIT 655 (748)
T ss_pred HHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhh--HHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchh
Confidence 33344455566778889999999999998887532 22222122 233334444445556666666665443
No 394
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.46 E-value=5.6e+02 Score=26.79 Aligned_cols=370 Identities=14% Similarity=0.080 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHh-----------------------hhhhHHHHHHHHHHhccc
Q 007863 157 PEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE-----------------------AAHLKSEIMSIFEELTQD 213 (587)
Q Consensus 157 ~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~-----------------------~~~~~~~i~~~l~~l~~d 213 (587)
.++..-..+.-+...+.+.++.+++.+.-.|..+...+. -..+...++..+..+++-
T Consensus 204 nPE~N~~~L~~l~eml~s~n~~~~Kl~~lSLlaVFKDIiP~YkIR~lte~Ek~~k~sKev~klr~yE~~Ll~~Yk~ylQk 283 (704)
T KOG2153|consen 204 NPEENLKKLKELFEMLDSQNPKAKKLALLSLLAVFKDIIPGYKIRPLTEKEKRTKLSKEVLKLREYEQALLKQYKSYLQK 283 (704)
T ss_pred CHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhcccceecccHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CchhHHHH-------------HHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccc
Q 007863 214 DQDSVRLL-------------AVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD 280 (587)
Q Consensus 214 ~~~~vr~~-------------a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ 280 (587)
-...++.. |+.|+..+....+.-.+...++..+....+|+...++..+++++..+...-+.....-.
T Consensus 284 Le~~vK~~~~~~~~~v~l~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~~g~~sl~ 363 (704)
T KOG2153|consen 284 LEQFVKDLSLRTPQQVSLAQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDNGGSGSLA 363 (704)
T ss_pred HHHHHhhhhhcchHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCCccchhHH
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC----------------------------HHHHHHhHHHHHhHhcCCCc
Q 007863 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILN----------------------------PELAIQHILPCVKELSSDSS 332 (587)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----------------------------~~~~~~~~~~~l~~~~~d~~ 332 (587)
++..+..+++-.+-+|.-.++..+..+-..-. ...........=..+.....
T Consensus 364 ~Vr~i~~llK~rn~~v~~~~~~~~lsLri~ed~~~k~ke~~~k~~~~k~~k~k~~~lskK~RK~kKe~~ki~rE~reaea 443 (704)
T KOG2153|consen 364 IVRIINSLLKTRNYEVLPDMITTFLSLRIDEDQTKKDKEDEKKQKNKKSSKKKLSSLSKKERKRKKERNKIEREMREAEA 443 (704)
T ss_pred HHHHHHHHhhhhcccchhhHHHHHHhcchhhhccchhhhccchhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhc
Q ss_pred HHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcH
Q 007863 333 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 412 (587)
Q Consensus 333 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 412 (587)
...+..=......+. ..+...+...+++.-..+-.++...+..+...+..+.+ ..++..+.+++.|....
T Consensus 444 ~e~aeek~k~~sEiL---------kiVFtiYFrILkn~~~tll~~vlEGlakf~h~invef~-~dll~vlk~ll~d~~~~ 513 (704)
T KOG2153|consen 444 EESAEEKMKKQSEIL---------KIVFTIYFRILKNDRYTLLGAVLEGLAKFAHLINVEFL-GDLLKVLKELLEDIELS 513 (704)
T ss_pred cccHHHHHHHHHHHH---------HHHHHHHHHHHhcchhhHHHHHHhhHHHHhhhccHHHh-hhHHHHHHHHHHhhhHH
Q ss_pred HHHHHHHHHHHHHHhhChhh--------HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh-----hhhchHHH
Q 007863 413 VRLAIIEYIPLLASQLGVGF--------FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW-----AMQHIVPQ 479 (587)
Q Consensus 413 vr~~~~~~l~~l~~~~~~~~--------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-----~~~~~~~~ 479 (587)
.|.+....-+.++-..|... |.+++-..+..+-.+++.+.-...+.++..+........ ++..++..
T Consensus 514 ~re~l~cvqtaf~IlS~qg~~lniD~~~fv~~lY~~l~~~~~~~~~~~~~~ilr~~d~~~~k~r~~v~~~~~~~~~Ll~~ 593 (704)
T KOG2153|consen 514 YREALLCVQTAFCILSGQGEKLNIDLGKFVDHLYKMLFPMNLGPDDDGFAIILRLLDPLLIKIRKPVVNVITKMERLLKC 593 (704)
T ss_pred HHHHHHHHHHHHHhhhccceeeccCHHHHHHHHHHHhcccccCCCcchHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHH
Q ss_pred HHhhhcCC--ccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHH
Q 007863 480 VLEMINNP--HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAK 536 (587)
Q Consensus 480 l~~~l~~~--~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~ 536 (587)
....+..+ -...|.....-..++...-.++......++.+..++.--.+.+|..+..
T Consensus 594 ~~h~~~~s~~~s~~~~~~fsk~~~~~~~~~pe~~s~a~~al~e~~l~ry~~~~~~~a~~ 652 (704)
T KOG2153|consen 594 SLHVFFNSKLISKYRDIEFSKRLNLLDSETPEYCSIASLALFEKLLLRYHPISRLMASE 652 (704)
T ss_pred HHHHhhcccchHHHHHHHhhhhhhhhhccCccccccccHHHHHHHHHhcchHHHHHHHH
No 395
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=34.08 E-value=1.1e+02 Score=20.76 Aligned_cols=60 Identities=15% Similarity=0.076 Sum_probs=42.4
Q ss_pred CCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhh
Q 007863 525 DRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 585 (587)
Q Consensus 525 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~ 585 (587)
|....++....+.++.+-..+..+++.+.+.....++ +...+.+|.....+|+..+..|.
T Consensus 3 ~~~~~~~k~~kK~i~~v~~FF~~DPlGqkIa~l~kdw-~~~~~~~r~KiR~~L~ey~k~L~ 62 (64)
T PF05596_consen 3 DKPEDDKKSVKKWIEEVRNFFYEDPLGQKIAQLAKDW-NEICQEVRKKIRAALAEYCKGLK 62 (64)
T ss_pred cchhhhHHhHHHHHHHHHHHhccCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455677777888888877777777766666665554 44567788888888888776654
No 396
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=33.09 E-value=2e+02 Score=21.17 Aligned_cols=55 Identities=16% Similarity=0.130 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhhcccChH--HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhh
Q 007863 490 LYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 490 ~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~ 545 (587)
..|.+++-.++.+....+-+ .+...++..+....+| ...++..+-++++.....-
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH 60 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTH 60 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhC
Confidence 45677777777777766554 2455555555565665 6677777777777765553
No 397
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=32.61 E-value=7.4e+02 Score=27.61 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=37.6
Q ss_pred CCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHH-H----HcCCCchHHHHHHHHHHHHHHHHhChhh
Q 007863 408 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM-Q----WLKDKVYSIRDAAANNVKRLAEEFGPDW 471 (587)
Q Consensus 408 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~-~----~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 471 (587)
+.+..+|...+..+..+.... .+.+...++.-+. . .--|.+..||..+...|.+++..+....
T Consensus 441 ~s~~~Vrik~~~~l~~~~l~n-r~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~C~t~~ 508 (1697)
T KOG3687|consen 441 ESRGAVRIKVLDVLSFVLLIN-RQFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEGCHTHH 508 (1697)
T ss_pred cccceEEEeeHHHHHHHHhhh-hhhhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhhcchhc
Confidence 455666766666666655322 2233333333222 1 1235677999999999999988776543
No 398
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.30 E-value=5.3e+02 Score=25.84 Aligned_cols=106 Identities=17% Similarity=0.226 Sum_probs=58.6
Q ss_pred HHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHH
Q 007863 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 440 (587)
Q Consensus 361 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 440 (587)
.++..+.++..+++--.-..+|..++..-..+ .......+..++......+|..++..+..+.-. ...|...++..
T Consensus 10 ~lIeelT~sg~~~~~p~~~k~lkkiv~~sdee--~~~~~~~L~~~~~~~h~~vR~l~lqii~elF~r--s~~FR~lii~n 85 (661)
T KOG2374|consen 10 GLIEELTKSGAQEVDPRLLKALKKIVRYSDEE--VRLSSQTLMELMRHNHSQVRYLTLQIIDELFMR--SKLFRTLIIEN 85 (661)
T ss_pred HHHHHHhhcCCcccChHHHHHHHHHHhccHHH--HHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHh--hHHHHHHHHhC
Confidence 33444445554555445555555555443322 234556666677777788888888777665421 11222222222
Q ss_pred HHHHc-----CCC----------chHHHHHHHHHHHHHHHHhChh
Q 007863 441 CMQWL-----KDK----------VYSIRDAAANNVKRLAEEFGPD 470 (587)
Q Consensus 441 l~~~l-----~d~----------~~~vr~~a~~~l~~l~~~~~~~ 470 (587)
+..+| .++ -..+|..|+.++..+-..||..
T Consensus 86 ~~efLeL~~gt~p~~PLP~p~~~a~~Lr~~ai~~~e~Wnekfg~~ 130 (661)
T KOG2374|consen 86 LDEFLELSIGTRPNLPLPAPPAVATTLRSKAIEFLEKWNEKFGFH 130 (661)
T ss_pred HHHHHHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 22222 111 2378999999999888888765
No 399
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=31.99 E-value=2.4e+02 Score=21.68 Aligned_cols=86 Identities=14% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH---HHHHhHHHHHHhhcCCCCccH
Q 007863 454 DAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNI 530 (587)
Q Consensus 454 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~v 530 (587)
...+..+..++...... ...++..+.+.+....+..|..++..+..+.+..+.. .+...+.+.+.......++.+
T Consensus 18 ~~~I~~lt~~a~~~~~~--a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 95 (114)
T cd03562 18 QPSIQTLTKLAIENRKH--AKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKT 95 (114)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHH
Q ss_pred HHHHHHHHHHH
Q 007863 531 KFNVAKVLQSL 541 (587)
Q Consensus 531 R~~a~~~l~~l 541 (587)
|....+.+..+
T Consensus 96 r~kl~rl~~iW 106 (114)
T cd03562 96 RKKLERLLNIW 106 (114)
T ss_pred HHHHHHHHHHc
No 400
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=30.61 E-value=4.7e+02 Score=24.68 Aligned_cols=29 Identities=17% Similarity=0.012 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 007863 163 ELRTIYRQLCQDDMPMVRRSAATNLGKFA 191 (587)
Q Consensus 163 ~l~~~l~~l~~~~~~~vR~~a~~~l~~l~ 191 (587)
.+.+.+..+++.-++..|-.|++++..+.
T Consensus 149 LfleyLgkl~Q~i~~lTrlfav~cl~~l~ 177 (432)
T COG5231 149 LFLEYLGKLSQLIDFLTRLFAVSCLSNLE 177 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444555555556666777777666654
No 401
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=29.35 E-value=5.5e+02 Score=25.16 Aligned_cols=181 Identities=10% Similarity=0.093 Sum_probs=92.7
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHH-hhCHHHHHH-hHHHHHhHhcCCCcHHH-HHHHHHHHHhhhhhhc---h
Q 007863 279 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICR-ILNPELAIQ-HILPCVKELSSDSSQHV-RSALATVIMGMAPILG---K 352 (587)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~-~~~~~~~~~-~~~~~l~~~~~d~~~~v-r~~a~~~l~~l~~~~~---~ 352 (587)
..++--+..+++++|++-|...-..|-++.. .++...+.. .+-..+.+......... -...++.+|.+...+. +
T Consensus 176 ~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlK 255 (457)
T KOG2085|consen 176 QKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLK 255 (457)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcch
Confidence 3466667778888899999887777766544 222222211 12222222222211111 1223455555555442 2
Q ss_pred HHHHHhHHHHHHHhcCCCC-hHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh
Q 007863 353 DATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431 (587)
Q Consensus 353 ~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~ 431 (587)
++..-.+...++.+-+-.+ ..-..+...++-.+.+.- ..+.+.++..+.+..--.+..-+...+..++.+.+...+.
T Consensus 256 EEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfveKd--~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~ 333 (457)
T KOG2085|consen 256 EEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFVEKD--PKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPS 333 (457)
T ss_pred hHHHHHHHHhhhccccCCCccccccccceeeeeeeccC--ccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHH
Confidence 3333333444444433211 111122222222222211 0122334444444444444455667778888888888888
Q ss_pred hHHHHHHHHHHH---HcCCCchHHHHHHHHHHH
Q 007863 432 FFDDKLGALCMQ---WLKDKVYSIRDAAANNVK 461 (587)
Q Consensus 432 ~~~~~l~~~l~~---~l~d~~~~vr~~a~~~l~ 461 (587)
.|..-..|++.+ ++.++...|-+.|+..+.
T Consensus 334 eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wn 366 (457)
T KOG2085|consen 334 EFQKIMVPLFRQIARCVSSPHFQVAERALYLWN 366 (457)
T ss_pred HHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHh
Confidence 887766777654 577888899998887764
No 402
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.75 E-value=3e+02 Score=26.41 Aligned_cols=65 Identities=22% Similarity=0.206 Sum_probs=40.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHHhhC-HHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhh
Q 007863 282 VPAYVRLLRDNEAEVRIAAAGKVTKICRILN-PELAIQHILPCVKELSSDSSQHVRSALATVIMGM 346 (587)
Q Consensus 282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l 346 (587)
...++.++++....-|..++..++.....-+ ...-...+.+.+..++.|+++.+|..++.+|.+.
T Consensus 9 ~~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~~ 74 (364)
T COG5330 9 DQDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQC 74 (364)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHhC
Confidence 4445566666666666666666666555444 3333455666666777777777777777766554
No 403
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=28.53 E-value=53 Score=24.86 Aligned_cols=24 Identities=8% Similarity=0.009 Sum_probs=14.7
Q ss_pred HHHhhcCCCCccHHHHHHHHHHHH
Q 007863 518 VVINASKDRVPNIKFNVAKVLQSL 541 (587)
Q Consensus 518 ~l~~~l~d~~~~vR~~a~~~l~~l 541 (587)
.++.+++++++.||..|+..+-.+
T Consensus 51 aLl~LL~hpn~~VRl~AA~~~L~~ 74 (106)
T PF09450_consen 51 ALLPLLKHPNMQVRLWAAAHTLRY 74 (106)
T ss_dssp GGGGGGGSS-HHHHHHHHHTTTTT
T ss_pred HHHHHHcCCChhHHHHHHHHHHHh
Confidence 455667777777777666554443
No 404
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=28.38 E-value=1.4e+02 Score=23.12 Aligned_cols=33 Identities=24% Similarity=0.147 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 007863 433 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 465 (587)
Q Consensus 433 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 465 (587)
+....++++.+-+.|++.+|+..|++.|-..+.
T Consensus 5 f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~ 37 (115)
T PF14663_consen 5 FEDWGIELLVTQLYDPSPEVVAAALEILEEACE 37 (115)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 345567788888889999999999888888775
No 405
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=27.82 E-value=5.3e+02 Score=24.43 Aligned_cols=58 Identities=7% Similarity=-0.049 Sum_probs=27.4
Q ss_pred CCCcHHHHHHHHHHHHHHHhhChh--hHH--HHHHHHHHHH---cCCCchHHHHHHHHHHHHHHH
Q 007863 408 DRHWRVRLAIIEYIPLLASQLGVG--FFD--DKLGALCMQW---LKDKVYSIRDAAANNVKRLAE 465 (587)
Q Consensus 408 ~~~~~vr~~~~~~l~~l~~~~~~~--~~~--~~l~~~l~~~---l~d~~~~vr~~a~~~l~~l~~ 465 (587)
+.+.+++...+..+..+.-..... .|. ..-++.+... -.+.+.-|+.-++-.||.+..
T Consensus 167 ~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 167 NSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 567888888877776665322110 010 0122333332 234455666666666666555
No 406
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.32 E-value=4.8e+02 Score=25.59 Aligned_cols=62 Identities=8% Similarity=-0.128 Sum_probs=29.6
Q ss_pred CCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHH-HHcCCCchHHHHHHHHHHHHHHHHhChh
Q 007863 409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM-QWLKDKVYSIRDAAANNVKRLAEEFGPD 470 (587)
Q Consensus 409 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~-~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 470 (587)
.++..+..-.++|..+++.+..+.-.+.+.+-++ .-++++...--..|+.+|..+.+.+|..
T Consensus 17 Tdp~~~eedw~ai~~fceqinkdp~gp~lAv~LlaHKiqSPqe~EAl~altvLe~cmkncGek 79 (594)
T KOG1086|consen 17 TDPSNDEEDWKAIDGFCEQINKDPEGPLLAVRLLAHKIQSPQEWEALQALTVLEYCMKNCGEK 79 (594)
T ss_pred cCccchHHHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHhhhHH
Confidence 4445555555555555555554443333322222 2344544444444555555555555544
No 407
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=26.56 E-value=4.5e+02 Score=23.21 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=34.4
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhh
Q 007863 278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 348 (587)
Q Consensus 278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~ 348 (587)
.+++++.+....++.+...|.+++...-...+ .+.....+++....+++|+...|+.+.-.+|.+++.
T Consensus 116 ~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k---~~~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k 183 (222)
T COG4912 116 WPDLIEEWAADAEEDNRWERRAAIVHQLVYKK---KTLDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGK 183 (222)
T ss_pred CHHHHHHHHhccccchHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHccChHHHHHHHHHHHHHHHHh
Confidence 34455555433344333344333333222222 222223456666666666666677666666666666
No 408
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=26.14 E-value=3.4e+02 Score=22.27 Aligned_cols=65 Identities=8% Similarity=0.068 Sum_probs=32.0
Q ss_pred hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhc
Q 007863 474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~ 546 (587)
..++..+.+--.......+..|+..++.+... +-+..++.++.+.+..+...|+++|....--++
T Consensus 62 A~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GG--------YNV~~LI~~L~~~d~~lA~~Aa~aLk~TlLvyD 126 (154)
T PF11791_consen 62 AEFLAAIAKGEISSPLISPAEAVELLGTMLGG--------YNVQPLIDLLKSDDEELAEEAAEALKNTLLVYD 126 (154)
T ss_dssp HHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SS--------TTHHHHHHGG--G-TTTHHHHHHHHHT--TTCC
T ss_pred HHHHHHHHcCCccCCCcCHHHHHHHHhhccCC--------CcHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHh
Confidence 33444443332222334555555555554432 234467777777778888888888877665544
No 409
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=25.60 E-value=5.7e+02 Score=24.07 Aligned_cols=218 Identities=12% Similarity=0.198 Sum_probs=121.0
Q ss_pred HHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhh-hchh----hH---hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 007863 355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV-IGID----LL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426 (587)
Q Consensus 355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~-~~~~----~~---~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~ 426 (587)
+...+++.+++.+.+-+-+-|..+......+... +|.. ++ ...+++.+...-.+ .+.+ ++.+=..+.+
T Consensus 76 ~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~i---aL~cg~mlrE 151 (342)
T KOG1566|consen 76 YNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEI---ALTCGNMLRE 151 (342)
T ss_pred HhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHH---HHHHHHHHHH
Confidence 3445566677777776666676666666555421 1211 01 12233333322111 1222 2221111222
Q ss_pred hhChhhHH-----HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCh---hhhh---hchHHH-HHhhhcCCccHHHHH
Q 007863 427 QLGVGFFD-----DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAM---QHIVPQ-VLEMINNPHYLYRMT 494 (587)
Q Consensus 427 ~~~~~~~~-----~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~---~~~~~~-l~~~l~~~~~~~r~~ 494 (587)
+..-+... +.-...+..+++-+..++-.-|...+..+...-.. +++. +.+.+. -..++.+.|+..|..
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 22222211 12233445566777778877788877776653211 2211 333444 455688899999999
Q ss_pred HHHHHHHhhcccChHH----HH--HhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH-H-------HHHhHHHHHHH
Q 007863 495 ILQAISLLAPVMGSEI----TC--SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-V-------VEKSIRPCLVE 560 (587)
Q Consensus 495 a~~~l~~l~~~~~~~~----~~--~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~-~-------~~~~i~~~l~~ 560 (587)
+...++.+...-.... |. ..-+..+..++.|++.++...|.......+..-..+ + -...++..+..
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KLl~~l~~ 311 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKLLELLHD 311 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHHHHHHHH
Confidence 9999999876433321 22 245667888999999999999998887776553322 1 11344555555
Q ss_pred hcCCCCccHHHHHHHH
Q 007863 561 LSEDPDVDVRFFATQA 576 (587)
Q Consensus 561 l~~d~~~~Vr~~a~~a 576 (587)
+-.|..+|.+....++
T Consensus 312 f~~d~~~DeqF~dEk~ 327 (342)
T KOG1566|consen 312 FHTDRTEDEQFLDEKA 327 (342)
T ss_pred hCCCCCchhhhhhhHH
Confidence 6677767776665554
No 410
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=25.33 E-value=8.7e+02 Score=26.10 Aligned_cols=145 Identities=14% Similarity=0.080 Sum_probs=81.6
Q ss_pred hhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhc
Q 007863 93 TLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLC 172 (587)
Q Consensus 93 ~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~ 172 (587)
.++.+++..+.+.+-..+......-...-+...++.+..+ . .-..++.++.. ..+.+-+.++..+...+
T Consensus 11 ~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~---t----~s~~~~~il~~----~~~P~~K~~~~~l~~~~ 79 (668)
T PF04388_consen 11 SLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLS---T----NSQRALEILVG----VQEPHDKHLFDKLNDYF 79 (668)
T ss_pred HHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhh---c----CcHHHHHHHHh----cCCccHHHHHHHHHHHH
Confidence 3445666666666666665555442222222333333221 0 01112233321 22234467777777777
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhh---hhHHHHH-HHHHHhcccCchhHHHHHHHHHHHHhcccCh--hhhhhchHHHH
Q 007863 173 QDDMPMVRRSAATNLGKFAATVEAA---HLKSEIM-SIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVI 246 (587)
Q Consensus 173 ~~~~~~vR~~a~~~l~~l~~~~~~~---~~~~~i~-~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l 246 (587)
..+ .-|..++..|+.++..-+.- .....++ .++.-+..|.+..+-..|+.+|..+...++. ..+.+.++.++
T Consensus 80 ~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If 157 (668)
T PF04388_consen 80 VKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIF 157 (668)
T ss_pred cCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Confidence 654 67888899999888754321 1111223 3344455677788888899999888888775 44667777777
Q ss_pred HHhc
Q 007863 247 VNFS 250 (587)
Q Consensus 247 ~~~~ 250 (587)
.+++
T Consensus 158 ~Rl~ 161 (668)
T PF04388_consen 158 GRLL 161 (668)
T ss_pred HHHH
Confidence 7766
No 411
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=24.57 E-value=3.9e+02 Score=24.43 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=59.5
Q ss_pred cccCchhHHHHHHHHHHHHhcccCh-hhh---hh-chHHHHHHhcCCC---chHHHHHHHHHHHHHHHHhCCCC----cc
Q 007863 211 TQDDQDSVRLLAVEGCGALGKLLEP-QDC---VA-HILPVIVNFSQDK---SWRVRYMVANQLYELCEAVGPEP----TR 278 (587)
Q Consensus 211 ~~d~~~~vr~~a~~~l~~l~~~~~~-~~~---~~-~l~~~l~~~~~d~---~~~vR~~a~~~l~~l~~~~~~~~----~~ 278 (587)
..+..+..+..+++++..+...-.. ... .. .++..+....... +..+|.+++..+-+++....... ..
T Consensus 119 ~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~ 198 (268)
T PF08324_consen 119 SSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQ 198 (268)
T ss_dssp TTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHH
T ss_pred cCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 3345567788888888887765332 111 12 3445555444443 78899999988888876543322 11
Q ss_pred cchHHHHHHh-cCC-ChHHHHHHHHHhHHHHH
Q 007863 279 SDVVPAYVRL-LRD-NEAEVRIAAAGKVTKIC 308 (587)
Q Consensus 279 ~~l~~~l~~~-l~d-~~~~vr~~a~~~l~~l~ 308 (587)
..++..+.+. ... .++++...++-++|.+.
T Consensus 199 ~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 199 SELLSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 2355666663 222 56788888888888887
No 412
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=24.55 E-value=6.1e+02 Score=24.05 Aligned_cols=174 Identities=11% Similarity=0.082 Sum_probs=0.0
Q ss_pred CCcchHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCH
Q 007863 79 GGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE 158 (587)
Q Consensus 79 ~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~ 158 (587)
|-......++....-+...+++. -+.....+..+....++++..+.+..++.+..+..+...-.....++..++...
T Consensus 40 gl~~~l~~ii~~c~v~~k~~ekd-le~vlnsi~sLi~~~~~e~~e~~v~a~~ekva~q~n~~~~~l~L~vLsnLfn~~-- 116 (378)
T KOG2753|consen 40 GLEEDLLMIIEACDVLAKIPEKD-LECVLNSIVSLIKNAPPEKVEEMVKAICEKVAKQPNDKTASLRLQVLSNLFNGV-- 116 (378)
T ss_pred CHHHHHHHHHHHhHHhhcCCcch-HHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHhcCccCCCcccHHHHHHHHHhcc--
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhH--HHHHHHHHHHHhcccCh-
Q 007863 159 ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSV--RLLAVEGCGALGKLLEP- 235 (587)
Q Consensus 159 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~v--r~~a~~~l~~l~~~~~~- 235 (587)
..+.| +|......+-.++...+--.+...=+..+...+++=+..+ .+.-...+.........
T Consensus 117 --------------d~~~~-aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~ 181 (378)
T KOG2753|consen 117 --------------DKPTP-ARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSV 181 (378)
T ss_pred --------------CCCch-HHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchh
Q ss_pred hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 007863 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (587)
Q Consensus 236 ~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~ 270 (587)
+.-...+..++-....|.-...|..|.+++.....
T Consensus 182 ~~s~kvmt~lLgtyt~dnas~AredA~rcV~~av~ 216 (378)
T KOG2753|consen 182 DESSKVMTELLGTYTEDNASEAREDAMRCVVEAVK 216 (378)
T ss_pred hhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHc
No 413
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=24.54 E-value=5e+02 Score=23.02 Aligned_cols=66 Identities=12% Similarity=0.184 Sum_probs=43.9
Q ss_pred hhHHHHHHhhcCC-CCcchhhHHhhhhhhccCCCHHHH-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 007863 125 HFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEALK-----TELRTIYRQLCQDDMPMVRRSAATNLGKF 190 (587)
Q Consensus 125 ~ll~~~~~l~~~~-~~~~r~~a~~l~~~~~~~~~~~~~-----~~l~~~l~~l~~~~~~~vR~~a~~~l~~l 190 (587)
++.|++.....+. ....|..+.+.++.+.++.++.+. .+++|++...++..+..-+..++-.++.+
T Consensus 145 flypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qki 216 (315)
T COG5209 145 FLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKI 216 (315)
T ss_pred eeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4567765544333 456788999999998888876533 46778888887777655555555444443
No 414
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=24.54 E-value=6.8e+02 Score=24.59 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=24.4
Q ss_pred HhHHHHHHHhcCCCChHHHHHHHHHhHHhhhh
Q 007863 357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (587)
Q Consensus 357 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~ 388 (587)
..++--++.++.+++|.-|...-..|.++...
T Consensus 176 ~~FvlkLLdLFdSEDpRERe~LKT~LhrIygK 207 (457)
T KOG2085|consen 176 QKFVLKLLDLFDSEDPREREFLKTILHRIYGK 207 (457)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 34555677788888899998888888888753
No 415
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=24.48 E-value=1.6e+02 Score=18.32 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 007863 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAAT 193 (587)
Q Consensus 161 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~ 193 (587)
.+++.+++.+.+..+++..|...+.+|+.+...
T Consensus 5 ~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~f 37 (46)
T PF01465_consen 5 LEYLKNVLLQFLESREPSEREQLLPVIATLLKF 37 (46)
T ss_dssp HHHHHHHHHHHHTTSS---HHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCC
Confidence 456677777777777778888777777776543
No 416
>COG2733 Predicted membrane protein [Function unknown]
Probab=24.38 E-value=6.7e+02 Score=24.44 Aligned_cols=23 Identities=9% Similarity=0.210 Sum_probs=14.8
Q ss_pred hcCCccHHHHHHHHHHHHhhccc
Q 007863 484 INNPHYLYRMTILQAISLLAPVM 506 (587)
Q Consensus 484 l~~~~~~~r~~a~~~l~~l~~~~ 506 (587)
..+++..+|.....++..+++.+
T Consensus 310 ~e~~~s~l~~~l~~~~~~~Ge~l 332 (415)
T COG2733 310 YESEDSMLRKRLARAVQSVGEEL 332 (415)
T ss_pred ccCchhHHHHHHHHHHHHHHHHH
Confidence 45666777777777766666543
No 417
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.12 E-value=2.9e+02 Score=20.14 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=40.7
Q ss_pred HHhHHHHHHhhcCCC--CccHHHHHHHHHHHHHhhh-chHHHHHhHHHHHHHhcCCCCc--cHHHHHHHHHHHH
Q 007863 512 CSQLLPVVINASKDR--VPNIKFNVAKVLQSLIPIV-DQSVVEKSIRPCLVELSEDPDV--DVRFFATQALQSK 580 (587)
Q Consensus 512 ~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~l~~~~-~~~~~~~~i~~~l~~l~~d~~~--~Vr~~a~~al~~l 580 (587)
.++++..+....+|. ..++|..|-++...+...- .+.......+..|.+..+|++- -.|......++.|
T Consensus 15 i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPNmP~h~RT~iw~vis~L 88 (93)
T COG1698 15 INQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPNMPLHARTLIWNVISQL 88 (93)
T ss_pred HHHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 344555555556664 3578888888777776532 2234445667777788787764 2455444444444
No 418
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=23.73 E-value=2.9e+02 Score=25.96 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=49.6
Q ss_pred HhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH-HHHHhHHHHHHHhcCCC---CccHHHHHHHHHHHH
Q 007863 513 SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSEDP---DVDVRFFATQALQSK 580 (587)
Q Consensus 513 ~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~l~~d~---~~~Vr~~a~~al~~l 580 (587)
..+...+..++..+++.-+.+|+-.|..+.+.++.. .....+...+.++..+. -.|++..|..-++.+
T Consensus 226 ~~i~~~l~~~L~s~eym~iRNai~vL~~i~~~FP~v~~~~~~l~~~l~~l~~~e~~~R~Dlk~~a~~~~~~L 297 (298)
T PF11262_consen 226 KRITKALISCLESKEYMHIRNAIIVLKKISPVFPVVDDHGEKLEKALEKLLEEEKGKREDLKLLANSYLGHL 297 (298)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHhc
Confidence 456667777888888888889999999998888763 44556777777765444 568888777766654
No 419
>PF09268 Clathrin-link: Clathrin, heavy-chain linker; InterPro: IPR015348 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the core motif for the alpha-helical zigzag linker region connecting the conserved N-terminal beta-propeller region to the C-terminal alpha-alpha-superhelical region in clathrin heavy chains []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 1C9I_A 1BPO_B 1C9L_A 1UTC_B 3GD1_I 3GC3_B 2XZG_A 2XZH_A.
Probab=22.85 E-value=75 Score=16.57 Aligned_cols=19 Identities=37% Similarity=0.763 Sum_probs=9.6
Q ss_pred chHHHHHhhhcCCccHHHH
Q 007863 475 HIVPQVLEMINNPHYLYRM 493 (587)
Q Consensus 475 ~~~~~l~~~l~~~~~~~r~ 493 (587)
.++|.+.+.+++++..+|.
T Consensus 3 ~IVpyi~~~L~N~~LAl~l 21 (24)
T PF09268_consen 3 NIVPYILNTLQNPDLALRL 21 (24)
T ss_dssp THHHHHHHTT--HHHHHHH
T ss_pred cchhHHHhccCCHHHHHHH
Confidence 4566666666665554444
No 420
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=22.52 E-value=1.8e+02 Score=21.35 Aligned_cols=51 Identities=12% Similarity=0.162 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHh
Q 007863 179 VRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALG 230 (587)
Q Consensus 179 vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~ 230 (587)
.|.+++-.|+.++...+- +.+.+.++..|....+| ...++..+-+++..+-
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFk 57 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFK 57 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHH
Confidence 355555666666555443 34455555555555554 3445555555555543
No 421
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=22.40 E-value=1e+03 Score=25.90 Aligned_cols=111 Identities=8% Similarity=0.027 Sum_probs=60.6
Q ss_pred hhhhhHHHhhhcCchhHHHHHHHHHHHHHHhh---cChhhHhh----hhHHHHHHhhcCCCCcch--hhHHhhhhhhccC
Q 007863 85 NVLLPPLETLCTVEETCVRDKAVESLCRIGSQ---MREQDVVE----HFIPLVKRLAAGEWFTAR--VSSCGLFHVAYPS 155 (587)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~---~~~~~~~~----~ll~~~~~l~~~~~~~~r--~~a~~l~~~~~~~ 155 (587)
..++|-+..++-++++..|.=|...+..+.+. +..+.+.. .+...+..+ +..++..- ..-..-+..+...
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ 197 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRL 197 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHH
Confidence 56677777888888999999999999998764 45444432 333334444 22221111 1112222333344
Q ss_pred CCHHHH---------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 007863 156 APEALK---------TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA 196 (587)
Q Consensus 156 ~~~~~~---------~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~ 196 (587)
++++.. ..+..++...+.+.....-...++++..+.+..+.
T Consensus 198 ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~ 247 (727)
T PF12726_consen 198 LDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGS 247 (727)
T ss_pred ccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHH
Confidence 443311 11444555555555344445666788877777664
No 422
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=21.89 E-value=1.2e+02 Score=21.18 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=26.3
Q ss_pred HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhh
Q 007863 512 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 512 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~ 545 (587)
..+-++.+..+..+..+.-|..|+++|+.|+...
T Consensus 37 aGYTi~El~~L~RSsv~~QR~~al~~L~~Il~~~ 70 (73)
T PF08620_consen 37 AGYTIQELFHLSRSSVPSQRCIALQTLGRILYRA 70 (73)
T ss_pred CCcCHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 3566777778888888888888888888887654
No 423
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=21.25 E-value=4.9e+02 Score=21.70 Aligned_cols=82 Identities=12% Similarity=0.084 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChh--hhhhchHHHHHH-hcCCC--chHHHHHHHHHHHHHHHHhCCC
Q 007863 201 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVN-FSQDK--SWRVRYMVANQLYELCEAVGPE 275 (587)
Q Consensus 201 ~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~-~~~d~--~~~vR~~a~~~l~~l~~~~~~~ 275 (587)
+.+.+.+.+.+..+++.+-..+++.+..+....... ...+.+++.+.. .++.+ +...|..+.+.+..++..
T Consensus 72 ~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~---- 147 (168)
T PF12783_consen 72 DDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKD---- 147 (168)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC----
Confidence 455666666665555666667777777776655431 112334444433 44433 346888888888888753
Q ss_pred CcccchHHHHHHh
Q 007863 276 PTRSDVVPAYVRL 288 (587)
Q Consensus 276 ~~~~~l~~~l~~~ 288 (587)
+..+...+..+
T Consensus 148 --p~~l~~lf~NY 158 (168)
T PF12783_consen 148 --PQFLVDLFVNY 158 (168)
T ss_pred --hhHHHHHHHHc
Confidence 33445555543
No 424
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=20.64 E-value=6.6e+02 Score=22.95 Aligned_cols=96 Identities=16% Similarity=0.203 Sum_probs=64.6
Q ss_pred CCccHHHHHHHHHHHHhhcc-cChHHHH---H-hHHHHHHhhcCCC---CccHHHHHHHHHHHHHhhhch----HHHHHh
Q 007863 486 NPHYLYRMTILQAISLLAPV-MGSEITC---S-QLLPVVINASKDR---VPNIKFNVAKVLQSLIPIVDQ----SVVEKS 553 (587)
Q Consensus 486 ~~~~~~r~~a~~~l~~l~~~-~~~~~~~---~-~~l~~l~~~l~d~---~~~vR~~a~~~l~~l~~~~~~----~~~~~~ 553 (587)
+.....+..+++++.++... .|...+. . .++..+....... +.++|.+++..+-++.-.... ......
T Consensus 121 ~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ 200 (268)
T PF08324_consen 121 SSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE 200 (268)
T ss_dssp TSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred CCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 45677889999999998764 3333332 2 4555555555554 789999888888777544322 233344
Q ss_pred HHHHHHH-hcCC-CCccHHHHHHHHHHHHH
Q 007863 554 IRPCLVE-LSED-PDVDVRFFATQALQSKD 581 (587)
Q Consensus 554 i~~~l~~-l~~d-~~~~Vr~~a~~al~~l~ 581 (587)
++..+.+ +... .++++..++.-|+|++.
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 6666666 3333 68899999999999987
Done!