Query 007863
Match_columns 587
No_of_seqs 296 out of 2373
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 12:22:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 100.0 2E-63 6.9E-68 517.9 56.0 580 2-581 3-586 (588)
2 1b3u_A Protein (protein phosph 100.0 4.8E-49 1.7E-53 409.6 46.0 531 53-585 16-551 (588)
3 4fdd_A Transportin-1; heat rep 100.0 4.6E-36 1.6E-40 323.8 52.8 526 58-586 101-703 (852)
4 4fdd_A Transportin-1; heat rep 100.0 7.3E-36 2.5E-40 322.2 45.7 569 12-583 93-743 (852)
5 1u6g_C TIP120 protein, CAND1; 100.0 1.6E-35 5.5E-40 332.0 45.4 575 8-586 5-683 (1230)
6 2bpt_A Importin beta-1 subunit 100.0 2.1E-34 7.2E-39 313.1 51.8 574 11-586 136-816 (861)
7 2bpt_A Importin beta-1 subunit 100.0 1.3E-34 4.4E-39 314.8 50.1 572 12-585 98-766 (861)
8 1u6g_C TIP120 protein, CAND1; 100.0 6.6E-35 2.2E-39 327.0 43.9 571 11-584 50-723 (1230)
9 1qgr_A Protein (importin beta 100.0 5.6E-33 1.9E-37 302.4 44.8 570 14-586 95-831 (876)
10 1qgr_A Protein (importin beta 100.0 8.7E-32 3E-36 293.1 54.1 574 11-586 130-875 (876)
11 1ibr_B P95, importin beta-1 su 99.9 3.6E-24 1.2E-28 215.3 39.2 389 166-561 5-459 (462)
12 2vgl_B AP-2 complex subunit be 99.9 1.5E-24 5.1E-29 222.5 35.2 505 10-580 14-530 (591)
13 1jdh_A Beta-catenin; beta-cate 99.9 1.5E-23 5.2E-28 214.4 31.3 475 71-580 2-528 (529)
14 1ibr_B P95, importin beta-1 su 99.9 3.9E-23 1.3E-27 207.7 30.4 352 155-524 82-461 (462)
15 2z6h_A Catenin beta-1, beta-ca 99.9 1.8E-22 6.1E-27 210.3 35.6 474 74-582 2-527 (644)
16 2z6g_A B-catenin; FULL-length, 99.9 1.1E-22 3.7E-27 214.8 33.6 490 89-582 118-663 (780)
17 3now_A UNC-45 protein, SD10334 99.9 6E-21 2E-25 195.9 44.7 570 12-582 52-737 (810)
18 3now_A UNC-45 protein, SD10334 99.9 1E-21 3.4E-26 201.6 38.8 571 10-582 93-782 (810)
19 2z6g_A B-catenin; FULL-length, 99.9 1.7E-22 5.8E-27 213.4 33.6 533 11-564 117-684 (780)
20 2vgl_B AP-2 complex subunit be 99.9 8.3E-23 2.9E-27 209.6 30.2 468 90-582 17-493 (591)
21 1wa5_B Importin alpha subunit; 99.9 3.2E-22 1.1E-26 203.8 32.7 378 204-581 89-509 (530)
22 2jdq_A Importin alpha-1 subuni 99.9 3.5E-22 1.2E-26 199.9 30.9 378 204-581 22-442 (450)
23 2jdq_A Importin alpha-1 subuni 99.9 4.7E-22 1.6E-26 199.0 29.3 379 165-543 22-443 (450)
24 1wa5_B Importin alpha subunit; 99.9 2.2E-21 7.5E-26 197.7 29.4 380 165-544 89-511 (530)
25 1w63_A Adapter-related protein 99.9 7.8E-20 2.7E-24 188.0 38.8 530 9-581 10-576 (618)
26 4b8j_A Importin subunit alpha- 99.9 1.6E-20 5.6E-25 191.3 33.6 377 204-581 76-495 (528)
27 2z6h_A Catenin beta-1, beta-ca 99.9 8.6E-20 2.9E-24 190.1 36.3 450 99-565 70-549 (644)
28 4b8j_A Importin subunit alpha- 99.9 3.7E-20 1.3E-24 188.7 32.2 379 165-544 76-497 (528)
29 1jdh_A Beta-catenin; beta-cate 99.9 1.2E-19 4E-24 185.6 32.1 421 160-581 14-488 (529)
30 1w63_A Adapter-related protein 99.8 7.4E-19 2.5E-23 180.8 30.6 508 10-543 35-577 (618)
31 2vgl_A Adaptor protein complex 99.8 6.4E-18 2.2E-22 173.0 33.9 539 6-581 8-588 (621)
32 3ul1_B Importin subunit alpha- 99.8 5.1E-18 1.7E-22 170.9 30.2 377 204-580 59-476 (510)
33 3tpo_A Importin subunit alpha- 99.8 2.4E-17 8.2E-22 167.1 33.6 376 205-580 79-495 (529)
34 3ul1_B Importin subunit alpha- 99.8 2.5E-17 8.4E-22 166.0 29.6 378 166-543 60-478 (510)
35 1oyz_A Hypothetical protein YI 99.8 5.8E-18 2E-22 157.2 21.8 254 281-579 24-279 (280)
36 3tpo_A Importin subunit alpha- 99.8 1.9E-16 6.6E-21 160.5 33.9 379 165-543 78-497 (529)
37 1wa5_C Importin alpha RE-expor 99.8 1.7E-15 5.7E-20 165.1 41.3 526 8-543 4-670 (960)
38 1oyz_A Hypothetical protein YI 99.8 1.7E-17 5.8E-22 154.0 21.6 255 240-539 22-278 (280)
39 2vgl_A Adaptor protein complex 99.8 1.2E-15 4.2E-20 156.1 33.6 462 99-582 51-550 (621)
40 1wa5_C Importin alpha RE-expor 99.8 5.1E-14 1.8E-18 153.4 47.3 556 13-577 89-786 (960)
41 2x1g_F Cadmus; transport prote 99.7 1.8E-15 6.3E-20 165.6 31.0 565 8-586 6-726 (971)
42 2x1g_F Cadmus; transport prote 99.7 5.5E-14 1.9E-18 153.9 41.8 563 11-581 124-857 (971)
43 2x19_B Importin-13; nuclear tr 99.7 1.7E-13 5.8E-18 150.1 44.6 565 8-586 23-718 (963)
44 2x19_B Importin-13; nuclear tr 99.7 1.4E-12 4.7E-17 142.9 50.2 555 21-583 115-847 (963)
45 2qk2_A LP04448P; mini spindles 99.7 6.2E-16 2.1E-20 139.7 18.1 186 396-586 14-209 (242)
46 2qk2_A LP04448P; mini spindles 99.7 1.4E-15 4.7E-20 137.4 19.8 196 236-470 10-210 (242)
47 3ltm_A Alpha-REP4; protein eng 99.7 2.4E-15 8.2E-20 132.9 19.4 187 240-466 18-204 (211)
48 3ltj_A Alpharep-4; protein eng 99.7 4.6E-15 1.6E-19 130.0 19.8 183 201-423 13-195 (201)
49 3ltm_A Alpha-REP4; protein eng 99.7 3.7E-15 1.3E-19 131.7 19.3 185 203-427 20-204 (211)
50 3ltj_A Alpharep-4; protein eng 99.7 4.1E-15 1.4E-19 130.3 19.4 186 239-464 12-197 (201)
51 3m1i_C Exportin-1; heat repeat 99.6 1.1E-11 3.7E-16 136.3 46.7 510 7-546 14-621 (1049)
52 3l6x_A Catenin delta-1; cateni 99.6 7E-13 2.4E-17 131.8 31.8 344 238-581 45-475 (584)
53 4ady_A RPN2, 26S proteasome re 99.6 4.3E-11 1.5E-15 123.4 44.4 309 243-581 394-718 (963)
54 3m1i_C Exportin-1; heat repeat 99.6 6.4E-12 2.2E-16 138.2 41.0 488 86-585 17-621 (1049)
55 1xm9_A Plakophilin 1; armadill 99.6 3.4E-13 1.2E-17 133.5 26.5 147 435-581 282-448 (457)
56 3opb_A SWI5-dependent HO expre 99.6 3.1E-12 1.1E-16 129.0 33.1 480 96-583 180-729 (778)
57 3ibv_A Exportin-T; karyopherin 99.6 1.1E-11 3.6E-16 133.3 38.3 570 10-586 7-734 (980)
58 4hxt_A De novo protein OR329; 99.6 4.2E-13 1.4E-17 122.4 23.6 187 398-584 45-243 (252)
59 3ibv_A Exportin-T; karyopherin 99.6 1.6E-11 5.4E-16 132.0 38.3 477 99-585 21-631 (980)
60 4hat_C Exportin-1; heat repeat 99.6 1.3E-10 4.4E-15 125.0 44.7 508 10-548 17-623 (1023)
61 2qk1_A Protein STU2; STU2P, XM 99.6 7.9E-14 2.7E-18 125.0 16.0 186 400-586 19-224 (249)
62 3opb_A SWI5-dependent HO expre 99.5 2.6E-11 9.1E-16 122.3 34.9 503 30-543 153-728 (778)
63 1xm9_A Plakophilin 1; armadill 99.5 1.7E-12 5.7E-17 128.6 25.9 149 396-544 282-450 (457)
64 4db8_A Armadillo-repeat protei 99.5 2.4E-13 8.2E-18 123.9 18.1 222 361-582 15-251 (252)
65 3l6x_A Catenin delta-1; cateni 99.5 8.9E-12 3.1E-16 123.9 30.0 369 162-544 47-477 (584)
66 4hxt_A De novo protein OR329; 99.5 1.5E-12 5E-17 118.7 22.6 149 398-546 87-244 (252)
67 4ady_A RPN2, 26S proteasome re 99.5 3.9E-10 1.3E-14 116.3 42.1 260 292-582 407-676 (963)
68 2qk1_A Protein STU2; STU2P, XM 99.5 5E-13 1.7E-17 119.8 18.4 196 238-433 13-227 (249)
69 4db8_A Armadillo-repeat protei 99.5 2.4E-13 8.3E-18 123.8 16.6 223 165-387 14-251 (252)
70 4hat_C Exportin-1; heat repeat 99.5 3.7E-10 1.3E-14 121.4 40.6 474 101-585 31-621 (1023)
71 3nmz_A APC variant protein; pr 99.5 8.9E-11 3E-15 114.1 31.5 245 338-582 167-450 (458)
72 4db6_A Armadillo repeat protei 99.4 9.2E-12 3.1E-16 109.8 18.3 187 396-582 11-209 (210)
73 1lrv_A LRV, leucine-rich repea 99.4 3.1E-14 1.1E-18 125.2 2.3 187 169-461 56-242 (244)
74 2iw3_A Elongation factor 3A; a 99.4 5.9E-11 2E-15 124.1 25.0 282 297-586 31-328 (986)
75 3gjx_A Exportin-1; transport, 99.4 2.9E-08 9.9E-13 106.4 45.2 504 10-548 29-649 (1073)
76 3nmz_A APC variant protein; pr 99.4 2.4E-10 8.3E-15 111.0 26.9 245 260-505 167-451 (458)
77 1lrv_A LRV, leucine-rich repea 99.4 5.5E-14 1.9E-18 123.6 1.1 188 207-500 55-242 (244)
78 4db6_A Armadillo repeat protei 99.3 2.5E-11 8.6E-16 106.9 15.8 188 160-347 9-208 (210)
79 2db0_A 253AA long hypothetical 99.3 2.8E-09 9.5E-14 84.9 24.3 216 356-582 30-246 (253)
80 2iw3_A Elongation factor 3A; a 99.3 1.8E-09 6E-14 113.1 29.6 277 219-504 31-324 (986)
81 3nmw_A APC variant protein; AR 99.2 1.6E-09 5.4E-14 102.1 21.3 211 372-582 98-334 (354)
82 3a6p_A Exportin-5; exportin-5, 99.2 1.3E-07 4.5E-12 104.6 39.1 507 7-546 9-660 (1204)
83 3nmw_A APC variant protein; AR 99.2 4E-09 1.4E-13 99.4 22.1 214 332-545 97-336 (354)
84 3a6p_A Exportin-5; exportin-5, 99.2 8.5E-08 2.9E-12 106.1 35.8 485 88-583 14-658 (1204)
85 2db0_A 253AA long hypothetical 99.2 4.6E-08 1.6E-12 78.0 24.0 215 317-542 30-245 (253)
86 4ffb_C Protein STU2; tubulin f 99.2 4.7E-10 1.6E-14 103.1 14.6 182 402-586 14-216 (278)
87 3tjz_B Coatomer subunit gamma; 99.2 7.9E-10 2.7E-14 102.6 15.8 292 154-462 59-350 (355)
88 3gjx_A Exportin-1; transport, 99.1 7.4E-07 2.5E-11 95.7 39.0 478 97-585 39-647 (1073)
89 2of3_A ZYG-9; multifunctional 99.1 1E-08 3.5E-13 90.4 19.6 180 286-471 52-242 (266)
90 3b2a_A TON_1937, putative unch 99.1 2.4E-08 8.3E-13 83.5 20.2 216 162-381 32-255 (265)
91 3tjz_B Coatomer subunit gamma; 99.1 3.7E-09 1.3E-13 98.1 17.2 284 240-540 67-350 (355)
92 1xqr_A HSPBP1 protein; armadil 99.1 7.6E-09 2.6E-13 94.7 18.9 171 413-583 56-239 (296)
93 3b2a_A TON_1937, putative unch 99.1 3E-08 1E-12 82.9 20.2 220 359-583 34-262 (265)
94 2of3_A ZYG-9; multifunctional 99.1 1.5E-08 5.1E-13 89.4 19.6 148 162-315 86-242 (266)
95 3oc3_A Helicase MOT1, MOT1; re 99.1 2.1E-09 7.2E-14 101.5 14.3 256 164-461 175-432 (800)
96 1xqr_A HSPBP1 protein; armadil 99.1 2.4E-08 8.2E-13 91.4 21.1 208 373-580 55-285 (296)
97 4ffb_C Protein STU2; tubulin f 99.0 1.1E-08 3.6E-13 94.0 17.3 183 285-470 14-217 (278)
98 3oc3_A Helicase MOT1, MOT1; re 99.0 7E-09 2.4E-13 98.1 15.8 259 7-305 172-432 (800)
99 1te4_A Conserved protein MTH18 99.0 6.9E-11 2.4E-15 94.8 0.2 121 435-580 11-131 (131)
100 1te4_A Conserved protein MTH18 98.9 1E-10 3.6E-15 93.7 -0.4 119 241-384 12-130 (131)
101 3l9t_A Putative uncharacterize 98.9 3.7E-08 1.3E-12 83.5 14.8 139 200-349 69-208 (240)
102 1vsy_5 Proteasome activator BL 98.8 6.5E-07 2.2E-11 95.3 21.7 386 154-545 499-968 (997)
103 3l9t_A Putative uncharacterize 98.7 1.4E-07 4.9E-12 80.0 11.6 139 239-388 69-208 (240)
104 3grl_A General vesicular trans 98.4 0.00017 5.9E-09 71.3 24.9 226 279-504 121-394 (651)
105 3grl_A General vesicular trans 98.3 0.00027 9.2E-09 70.0 25.8 300 9-309 21-394 (651)
106 1vsy_5 Proteasome activator BL 98.3 2.3E-05 7.8E-10 83.6 18.2 378 197-583 503-967 (997)
107 3u0r_A Apoptosis inhibitor 5; 98.3 0.00028 9.7E-09 66.5 22.5 256 215-482 41-315 (507)
108 3u0r_A Apoptosis inhibitor 5; 98.2 0.0014 4.8E-08 61.9 26.0 258 176-445 41-317 (507)
109 3tt9_A Plakophilin-2; cell adh 98.1 4.8E-05 1.6E-09 66.3 12.7 145 438-582 10-180 (233)
110 3tt9_A Plakophilin-2; cell adh 98.0 0.00031 1.1E-08 61.2 16.9 185 398-582 9-229 (233)
111 4gmo_A Putative uncharacterize 97.8 0.049 1.7E-06 56.5 38.1 85 47-134 34-128 (684)
112 4gmo_A Putative uncharacterize 97.8 0.021 7.3E-07 59.2 28.1 73 123-196 33-109 (684)
113 3o2t_A Symplekin; heat repeat, 97.4 0.074 2.5E-06 49.7 23.1 113 159-273 59-186 (386)
114 3gs3_A Symplekin, LD45768P; he 97.2 0.11 3.6E-06 45.8 23.2 108 318-427 52-174 (257)
115 3o2t_A Symplekin; heat repeat, 97.1 0.13 4.4E-06 48.1 21.7 183 374-561 41-272 (386)
116 1lsh_A Lipovitellin (LV-1N, LV 97.1 0.028 9.4E-07 61.3 19.8 169 241-429 391-579 (1056)
117 1lsh_A Lipovitellin (LV-1N, LV 97.1 0.015 5.1E-07 63.4 17.4 163 396-569 390-582 (1056)
118 3gs3_A Symplekin, LD45768P; he 96.9 0.18 6.1E-06 44.3 22.6 106 396-503 52-172 (257)
119 4atg_A TAF6; transcription, TF 95.6 0.68 2.3E-05 38.4 15.1 141 373-524 23-178 (196)
120 4atg_A TAF6; transcription, TF 94.6 1.7 5.8E-05 36.1 16.1 141 256-407 23-178 (196)
121 2fv2_A RCD1 required for cell 93.8 1.2 4E-05 38.5 12.3 159 9-192 3-174 (268)
122 2npp_B PP2A, B subunit, serine 92.8 7.1 0.00024 37.3 19.6 249 252-504 128-399 (449)
123 2b6c_A Hypothetical protein EF 92.7 1.8 6.1E-05 37.2 12.3 130 128-270 58-188 (220)
124 1upk_A MO25 protein; transfera 92.7 5.7 0.00019 36.0 21.7 184 396-581 77-282 (341)
125 3fga_B Serine/threonine-protei 92.6 6.8 0.00023 36.7 20.5 252 251-504 94-366 (403)
126 3ldz_A STAM-1, signal transduc 92.5 1.1 3.7E-05 35.2 9.6 75 474-548 41-119 (140)
127 3jxy_A Alkylpurine DNA glycosy 91.5 2.3 7.7E-05 36.9 11.6 159 128-305 64-223 (232)
128 2npp_B PP2A, B subunit, serine 91.4 10 0.00035 36.2 21.6 250 330-583 128-400 (449)
129 3jxy_A Alkylpurine DNA glycosy 91.3 3.8 0.00013 35.5 12.8 130 206-349 65-196 (232)
130 2b6c_A Hypothetical protein EF 91.2 6.4 0.00022 33.7 14.1 131 205-349 58-189 (220)
131 1upk_A MO25 protein; transfera 89.5 12 0.00041 33.9 23.3 206 355-565 75-313 (341)
132 1mhq_A ADP-ribosylation factor 89.4 6.7 0.00023 30.9 11.6 98 445-548 14-121 (148)
133 1x5b_A Signal transducing adap 89.4 3.8 0.00013 33.0 10.3 75 474-548 51-130 (163)
134 3g2s_A C-terminal fragment of 88.8 5.8 0.0002 31.3 10.7 72 436-507 48-129 (149)
135 1juq_A ADP-ribosylation factor 87.5 6.4 0.00022 32.0 10.5 99 445-549 26-134 (171)
136 1mhq_A ADP-ribosylation factor 87.2 9.6 0.00033 30.1 12.0 96 407-508 15-120 (148)
137 3ldz_A STAM-1, signal transduc 86.8 9.6 0.00033 29.7 12.5 76 160-235 39-118 (140)
138 1juq_A ADP-ribosylation factor 86.7 10 0.00034 30.8 11.3 96 408-509 28-133 (171)
139 3ut4_A CTHE_2751, putative unc 85.8 3.2 0.00011 31.8 7.2 28 474-501 30-57 (134)
140 3fga_B Serine/threonine-protei 85.2 25 0.00085 33.0 23.0 223 359-583 130-367 (403)
141 1x5b_A Signal transducing adap 85.2 13 0.00045 29.8 11.8 75 161-235 50-129 (163)
142 3zyq_A Hepatocyte growth facto 84.3 5.8 0.0002 34.1 9.3 75 474-548 44-123 (226)
143 1elk_A Target of MYB1; superhe 84.2 9.1 0.00031 30.6 9.8 97 445-547 29-134 (157)
144 3g2s_A C-terminal fragment of 82.5 16 0.00055 28.8 12.9 75 161-235 46-130 (149)
145 1w9c_A CRM1 protein, exportin 82.4 28 0.00097 31.4 17.8 184 373-566 13-228 (321)
146 3zyq_A Hepatocyte growth facto 81.4 25 0.00084 30.1 12.1 75 161-235 43-122 (226)
147 1vdy_A Hypothetical protein (R 80.2 7.6 0.00026 30.1 7.5 70 511-581 46-129 (140)
148 2jak_A Serine/threonine-protei 78.9 42 0.0015 31.3 16.5 208 251-460 139-362 (392)
149 1ho8_A Vacuolar ATP synthase s 78.7 48 0.0017 31.9 27.0 56 410-465 418-476 (480)
150 1vdy_A Hypothetical protein (R 78.0 14 0.00047 28.7 8.3 64 403-467 17-80 (140)
151 3ut4_A CTHE_2751, putative unc 77.6 17 0.00058 27.8 8.5 93 436-541 31-128 (134)
152 1dvp_A HRS, hepatocyte growth 72.3 42 0.0014 28.5 11.0 73 474-546 41-118 (220)
153 1elk_A Target of MYB1; superhe 69.2 41 0.0014 26.7 11.6 73 162-234 52-133 (157)
154 1ho8_A Vacuolar ATP synthase s 67.6 90 0.0031 30.0 25.2 55 488-542 418-475 (480)
155 3dad_A FH1/FH2 domain-containi 64.2 85 0.0029 28.5 18.5 69 359-427 161-232 (339)
156 1t06_A Hypothetical protein; s 63.6 71 0.0024 27.4 12.1 69 203-271 109-181 (235)
157 3vld_A DNA mismatch repair pro 61.5 1.2E+02 0.004 29.2 13.4 144 396-545 72-227 (500)
158 3rru_A TOM1L1 protein; structu 57.6 68 0.0023 25.3 10.1 74 162-235 52-134 (152)
159 3gvo_A Pumilio 2, pumilio homo 57.4 1.2E+02 0.004 27.9 12.3 302 245-568 40-349 (351)
160 1dvp_A HRS, hepatocyte growth 56.1 93 0.0032 26.3 12.7 73 162-234 41-118 (220)
161 3ebb_A Phospholipase A2-activa 52.7 1.3E+02 0.0044 27.0 12.0 93 490-582 163-263 (304)
162 2fv2_A RCD1 required for cell 51.3 1.2E+02 0.0042 26.3 12.0 54 450-503 116-173 (268)
163 1t06_A Hypothetical protein; s 51.0 92 0.0031 26.7 9.3 70 476-545 109-182 (235)
164 2jak_A Serine/threonine-protei 49.7 1.7E+02 0.0057 27.4 17.4 208 329-538 139-362 (392)
165 3dad_A FH1/FH2 domain-containi 49.1 1.6E+02 0.0053 26.9 17.7 97 293-389 131-233 (339)
166 3bwt_A Protein PUF4; pumilio, 48.4 1.6E+02 0.0054 26.8 15.0 13 259-271 22-34 (333)
167 1vsy_4 Proteasome activator BL 48.4 2.6E+02 0.0089 29.2 24.9 106 281-386 340-454 (799)
168 3rru_A TOM1L1 protein; structu 48.1 59 0.002 25.6 6.9 97 445-547 29-134 (152)
169 1vsy_4 Proteasome activator BL 46.9 2.7E+02 0.0094 29.1 25.9 113 198-310 335-456 (799)
170 4flb_A Regulation of nuclear P 41.7 1.1E+02 0.0039 23.1 8.4 33 474-506 39-71 (132)
171 3bwt_A Protein PUF4; pumilio, 41.3 2E+02 0.007 26.0 12.9 12 320-331 120-131 (333)
172 1sz9_A PCF11 protein; RNA poly 35.3 1.6E+02 0.0053 22.9 10.5 70 396-465 42-114 (144)
173 4fu3_A Regulation of nuclear P 34.3 96 0.0033 23.6 6.2 16 527-542 52-67 (135)
174 3k49_A MRNA-binding protein PU 31.2 3.2E+02 0.011 25.2 12.9 9 553-561 335-343 (369)
175 1sz9_A PCF11 protein; RNA poly 30.6 1.9E+02 0.0064 22.4 11.2 72 356-427 41-115 (144)
176 3k49_A MRNA-binding protein PU 29.1 3.4E+02 0.012 25.0 13.7 7 476-482 336-342 (369)
177 3gae_A Protein DOA1; UFD3, CDC 26.9 2.2E+02 0.0074 24.7 7.7 97 213-309 101-217 (253)
178 2i9c_A Hypothetical protein RP 25.2 47 0.0016 25.0 2.6 56 519-582 62-117 (123)
179 2qzg_A Conserved uncharacteriz 23.1 2E+02 0.0068 20.2 8.7 74 508-581 12-90 (94)
180 3l3f_X Protein DOA1, DOA1/UFD3 22.2 76 0.0026 29.3 4.0 97 486-582 210-326 (362)
181 3eg5_B Protein diaphanous homo 22.0 4.8E+02 0.016 24.2 12.5 28 438-465 164-191 (383)
182 4fu3_A Regulation of nuclear P 21.9 1.1E+02 0.0039 23.2 4.5 88 474-564 38-131 (135)
183 3l3f_X Protein DOA1, DOA1/UFD3 21.9 1.5E+02 0.0052 27.3 5.9 101 209-309 206-326 (362)
184 3d9j_A RNA-binding protein 16; 20.9 2.9E+02 0.01 21.3 7.1 87 454-543 23-119 (145)
185 4flb_A Regulation of nuclear P 20.0 2.8E+02 0.0097 20.8 11.2 32 397-428 40-71 (132)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=2e-63 Score=517.89 Aligned_cols=580 Identities=59% Similarity=0.964 Sum_probs=541.1
Q ss_pred CCCCCCcccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCCc
Q 007863 2 AMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGL 81 (587)
Q Consensus 2 ~~~~~~~~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~ 81 (587)
+++|++++|+..+++.|+|+|+++|..|++.+..++..+|++..+.+++|++.+..+++++||..+++.++.+.+.+|+.
T Consensus 3 ~~~~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~ 82 (588)
T 1b3u_A 3 ADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGP 82 (588)
T ss_dssp SCTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSG
T ss_pred cccCCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcH
Confidence 45789999999999999999999999999999999999999999999999999888888899999999999999988888
Q ss_pred chHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHH
Q 007863 82 EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALK 161 (587)
Q Consensus 82 ~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~ 161 (587)
.+.+.+++.+..+..++++.+|..|++++..++..++++.....++|++.++.+++++..|..++.+++.++...++...
T Consensus 83 ~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~ 162 (588)
T 1b3u_A 83 EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK 162 (588)
T ss_dssp GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHH
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHH
Confidence 88889999999998899999999999999999999998888889999999999988999999999999999999988888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhc
Q 007863 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAH 241 (587)
Q Consensus 162 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 241 (587)
+.++|.+..+++|+++.||..++++++.++...+.+.+.+.++|.+..+++|+++.||..|+.+++.++...+++...+.
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 242 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL 242 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999998887777888999999999999999999999999999998888767788
Q ss_pred hHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----HHH
Q 007863 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAI 317 (587)
Q Consensus 242 l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~ 317 (587)
++|.+..+++|++|.||..++++++.++...+.+.....++|.+..+++|++++||..++.+++.++..++++ .+.
T Consensus 243 ~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 322 (588)
T 1b3u_A 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM 322 (588)
T ss_dssp THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHH
Confidence 9999999999999999999999999999887765445678999999999999999999999999999988865 566
Q ss_pred HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhh
Q 007863 318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 397 (587)
Q Consensus 318 ~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~ 397 (587)
+.++|.+..+++|++|.||.+++.+++.++..+|.+...+.++|.+..+++|++++||..++.+++.+...++.+.+.+.
T Consensus 323 ~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ 402 (588)
T 1b3u_A 323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQS 402 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88999999999999999999999999999999988777788999999999999999999999999999998888777788
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchH
Q 007863 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIV 477 (587)
Q Consensus 398 ~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 477 (587)
++|.+..++.|++|++|..++..++.++..+|.+.+.+.++|.+..+++|+++.||..|+.+++.++..+|.+++.+.++
T Consensus 403 ~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ll 482 (588)
T 1b3u_A 403 LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATII 482 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHH
Confidence 99999999999999999999999999999999887778899999999999999999999999999999999987778899
Q ss_pred HHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHH
Q 007863 478 PQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPC 557 (587)
Q Consensus 478 ~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~ 557 (587)
|.+..+..++++.+|.+++.+++.++..+|.+.+.+.++|.+...++|++++||..++++++.++..++.+...+.++|.
T Consensus 483 p~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~ 562 (588)
T 1b3u_A 483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPI 562 (588)
T ss_dssp HHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 99999999999999999999999999998888888999999999999999999999999999999999887777889999
Q ss_pred HHHhcCCCCccHHHHHHHHHHHHH
Q 007863 558 LVELSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 558 l~~l~~d~~~~Vr~~a~~al~~l~ 581 (587)
|.++.+|++++||..|.+|++.+.
T Consensus 563 l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 563 LEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCchhHHHHHHHHHHHhh
Confidence 999999999999999999999875
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=4.8e-49 Score=409.60 Aligned_cols=531 Identities=21% Similarity=0.294 Sum_probs=477.0
Q ss_pred cccccCCchHHHHHHHHHhcccccCcCCcchHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHH
Q 007863 53 LSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKR 132 (587)
Q Consensus 53 l~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~ 132 (587)
+....+++.++|..+++.++.++...|.......++|.|.... ++++.+|..+.++++.+...++.......++|.+..
T Consensus 16 ~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~ 94 (588)
T 1b3u_A 16 IDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLES 94 (588)
T ss_dssp HHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHH
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 3344567889999999999887776665555677888887766 778899999999999988887766667789999998
Q ss_pred hhcCCCCcchhhHHhhhhhhccCCCHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhc
Q 007863 133 LAAGEWFTARVSSCGLFHVAYPSAPEA-LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELT 211 (587)
Q Consensus 133 l~~~~~~~~r~~a~~l~~~~~~~~~~~-~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~ 211 (587)
+..+++..+|..+...++.+....+++ ..+.++|++..+.+++++.+|..++..++.++...+. ...+.++|.+..++
T Consensus 95 l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~-~~~~~l~~~l~~l~ 173 (588)
T 1b3u_A 95 LATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS-AVKAELRQYFRNLC 173 (588)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH-HHHHHHHHHHHHHH
T ss_pred HHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh
Confidence 888888899999999999988887765 5667899999999999999999999999999877664 45788999999999
Q ss_pred ccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC
Q 007863 212 QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD 291 (587)
Q Consensus 212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 291 (587)
+|+++.||..++.+++.++...+.+...+.++|.+..+++|+++.||..|+.+++.++...+.+...+.++|.+..+++|
T Consensus 174 ~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d 253 (588)
T 1b3u_A 174 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAED 253 (588)
T ss_dssp TCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999988776778899999999999999999999999999998876544445689999999999
Q ss_pred ChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH----HHHHhHHHHHHHhc
Q 007863 292 NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD----ATIEQLLPIFLSLL 367 (587)
Q Consensus 292 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l 367 (587)
++|.||..++.+++.++...+++.+.+.++|.+.++++|+++.||.+++.+++.++..++.+ .+.+.++|.+..++
T Consensus 254 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l 333 (588)
T 1b3u_A 254 KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV 333 (588)
T ss_dssp SSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999888777889999999999999999999999999999888755 56788999999999
Q ss_pred CCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCC
Q 007863 368 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD 447 (587)
Q Consensus 368 ~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 447 (587)
+|+++.||..++.+++.++..+|.+...+.++|.+..+++|+++.+|..++..++.+....+.+...+.++|.+...+.|
T Consensus 334 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d 413 (588)
T 1b3u_A 334 SDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED 413 (588)
T ss_dssp TCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998876667899999999999999999999999999999888877778899999999999
Q ss_pred CchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCC
Q 007863 448 KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRV 527 (587)
Q Consensus 448 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~ 527 (587)
++|.+|..++.+++.++..+|.+++.+.++|.+...+.|+++.+|..++.+++.+...+|.+++.+.++|.+..+..|++
T Consensus 414 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~ 493 (588)
T 1b3u_A 414 AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPN 493 (588)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSC
T ss_pred CCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999988766789999999999999999999999999999999988788899999999999999
Q ss_pred ccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhh
Q 007863 528 PNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 585 (587)
Q Consensus 528 ~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~ 585 (587)
+.+|..++.+++.++..++.+.+...++|.|.+++.|++++||..+.++++.+.+.+|
T Consensus 494 ~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 551 (588)
T 1b3u_A 494 YLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD 551 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998888888999999999999999999999999999987655
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=4.6e-36 Score=323.83 Aligned_cols=526 Identities=18% Similarity=0.148 Sum_probs=421.5
Q ss_pred CCchHHHHHHHHHhcccccCcCCcchHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhH-------hhhhHHHH
Q 007863 58 DDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDV-------VEHFIPLV 130 (587)
Q Consensus 58 ~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-------~~~ll~~~ 130 (587)
++++.+|..++.+++.++..- .....+.+++.+.+.+.++++.+|+.++.+++.+++..++..- ...++|.+
T Consensus 101 ~~~~~vr~~~a~~i~~ia~~~-~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l 179 (852)
T 4fdd_A 101 DSSPLIRATVGILITTIASKG-ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKF 179 (852)
T ss_dssp CSSHHHHHHHHHHHHHHHHHT-TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhc-CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHH
Confidence 566789999999999887654 2345678899999988999999999999999999998765421 34577778
Q ss_pred HHhhcCCCCcchhhHHhhhhhhccCCCHH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHH
Q 007863 131 KRLAAGEWFTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMS 205 (587)
Q Consensus 131 ~~l~~~~~~~~r~~a~~l~~~~~~~~~~~---~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~ 205 (587)
.+...+++..+|..|+..+..+....+.. ....+++.+..++.|+++.||..++++|+.+++..+. ..+.+.+++
T Consensus 180 ~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~ 259 (852)
T 4fdd_A 180 LQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVE 259 (852)
T ss_dssp TTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 77778888899999998887776655443 3457888888899999999999999999999987654 245567888
Q ss_pred HHHHhcccCchhHHHHHHHHHHHHhcccCh----hhhhhchHHHHHHhc-----------CC-----------CchHHHH
Q 007863 206 IFEELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNFS-----------QD-----------KSWRVRY 259 (587)
Q Consensus 206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~-----------~d-----------~~~~vR~ 259 (587)
.+...++|+++.||..|++.+..+++.... ......++|.+...+ .| .+|.+|.
T Consensus 260 ~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~ 339 (852)
T 4fdd_A 260 YMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRK 339 (852)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHH
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHH
Confidence 888999999999999999999998764221 123456777777665 34 5789999
Q ss_pred HHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHH
Q 007863 260 MVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRS 337 (587)
Q Consensus 260 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~ 337 (587)
.++.+++.++...+. ...+.++|.+.+.++|++|.+|.+|+.+++.+++..+.. .+.+.++|.+..+++|+++.||.
T Consensus 340 ~a~~~L~~la~~~~~-~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~ 418 (852)
T 4fdd_A 340 CSAAALDVLANVYRD-ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRS 418 (852)
T ss_dssp HHHHHHHHHHHHHGG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 999999999998874 334568899999999999999999999999998866542 34577899999999999999999
Q ss_pred HHHHHHHhhhhhhch---HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh--hHhhhhHHHHHHHhcCCCcH
Q 007863 338 ALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWR 412 (587)
Q Consensus 338 ~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 412 (587)
+++.+++.++..++. ..+...+++.+...+.|.++.||..++.+++.+++..+.. .+.+.+++.+...+++.+..
T Consensus 419 ~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~ 498 (852)
T 4fdd_A 419 ITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHK 498 (852)
T ss_dssp HHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChH
Confidence 999999999987653 3456678899999999999999999999999999877654 24567777777788777777
Q ss_pred HHHHHHHHHHHHHHhhChhh----HHHHHHHHHH---HHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhh
Q 007863 413 VRLAIIEYIPLLASQLGVGF----FDDKLGALCM---QWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEM 483 (587)
Q Consensus 413 vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~ 483 (587)
....++++++.++...|... +.+.++|.+. ..+.|.++++| .++++++.++..+|..+ +.+.+++.+.+.
T Consensus 499 ~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~ 577 (852)
T 4fdd_A 499 NLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNL 577 (852)
T ss_dssp HHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 77778888888887766433 5677888777 45677778886 78999999999998764 234455544433
Q ss_pred hc-----------------CCccHHHHHHHHHHHHhhcccChHH--HH--HhHHHHHHhhcCCCCccHHHHHHHHHHHHH
Q 007863 484 IN-----------------NPHYLYRMTILQAISLLAPVMGSEI--TC--SQLLPVVINASKDRVPNIKFNVAKVLQSLI 542 (587)
Q Consensus 484 l~-----------------~~~~~~r~~a~~~l~~l~~~~~~~~--~~--~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~ 542 (587)
+. .++..+|..++.+++.++..+|.+. +. ..+++.+..++.|+++.+|..+..+++.++
T Consensus 578 l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~ 657 (852)
T 4fdd_A 578 VQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLT 657 (852)
T ss_dssp HHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 22 2356789999999999999887652 22 578999999999999999999999999999
Q ss_pred hhhchH--HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863 543 PIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 586 (587)
Q Consensus 543 ~~~~~~--~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~~ 586 (587)
..++.. .+...++|.+.+.+++.++.||..|.++++.++..+|+
T Consensus 658 ~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~ 703 (852)
T 4fdd_A 658 KACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI 703 (852)
T ss_dssp HHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG
T ss_pred HHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH
Confidence 877653 55567899999988888899999999999999988874
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=7.3e-36 Score=322.25 Aligned_cols=569 Identities=14% Similarity=0.152 Sum_probs=447.0
Q ss_pred HHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccccc-CCchHHHHHHHHHhcccccCcCCc-------ch
Q 007863 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGL-------EY 83 (587)
Q Consensus 12 ~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~~~~v~~~~~~~l~~~~~~~~~~-------~~ 83 (587)
..+++.|.++++.+|..+.+.++.++...++ ..|++++|.+.+.. +++..+|..+..+++.+++..+.. ..
T Consensus 93 ~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~ 171 (852)
T 4fdd_A 93 SECLNNIGDSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRP 171 (852)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcch
Confidence 4566778899999999999999999887754 57899999988755 456788888888888776644422 12
Q ss_pred HhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhh--HhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH--
Q 007863 84 ANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQD--VVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA-- 159 (587)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~-- 159 (587)
...+++.+.+++.++++.||..|+.++..++...+... ....+++.+.....+++..+|..++..++.+....++.
T Consensus 172 ~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~ 251 (852)
T 4fdd_A 172 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL 251 (852)
T ss_dssp HHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 45677888888889999999999999998776544321 22356777777778888899999998888877655432
Q ss_pred -HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH--h--hhhhHHHHHHHHHHhc-----------cc----------
Q 007863 160 -LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATV--E--AAHLKSEIMSIFEELT-----------QD---------- 213 (587)
Q Consensus 160 -~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~--~--~~~~~~~i~~~l~~l~-----------~d---------- 213 (587)
+.+.+++.+..++.|+++.||..+++.+..+++.. . -..+.+.++|.+...+ .|
T Consensus 252 ~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~ 331 (852)
T 4fdd_A 252 PHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDT 331 (852)
T ss_dssp GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccc
Confidence 55678899999999999999999999999887521 1 1345567778777665 33
Q ss_pred -CchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC--CcccchHHHHHHhcC
Q 007863 214 -DQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRSDVVPAYVRLLR 290 (587)
Q Consensus 214 -~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~ 290 (587)
..+.+|..+..+++.++...++ ...+.++|.+...+.|++|.+|..|+.+++.++...+.. .....++|.+..+++
T Consensus 332 ~~~~~vr~~a~~~L~~la~~~~~-~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~ 410 (852)
T 4fdd_A 332 ISDWNLRKCSAAALDVLANVYRD-ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS 410 (852)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT
T ss_pred cccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC
Confidence 3456899999999999988764 466789999999999999999999999999998654321 223568999999999
Q ss_pred CChHHHHHHHHHhHHHHHHhhCHH---HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH--HHHHhHHHHHHH
Q 007863 291 DNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLS 365 (587)
Q Consensus 291 d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~ 365 (587)
|+++.||.+++.+++.++...++. .+...+++.+.+.+.|+++.||..++.+++.+++..+.. .+.+.+++.+..
T Consensus 411 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~ 490 (852)
T 4fdd_A 411 DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVF 490 (852)
T ss_dssp CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHH
Confidence 999999999999999999876542 455778899999999999999999999999998877643 356778888888
Q ss_pred hcCCCChHHHHHHHHHhHHhhhhhchh----hHhhhhHHHHHH---HhcCCCcHHHHHHHHHHHHHHHhhChhhH--HHH
Q 007863 366 LLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVE---LAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDK 436 (587)
Q Consensus 366 ~l~d~~~~vr~~a~~~l~~i~~~~~~~----~~~~~~~~~l~~---~~~~~~~~vr~~~~~~l~~l~~~~~~~~~--~~~ 436 (587)
.+++........+..+++.++...|.. .+.+.++|.+.+ .+.|.++.+| .++++++.++..+|..+. .+.
T Consensus 491 ~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~ 569 (852)
T 4fdd_A 491 AFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEP 569 (852)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHH
Confidence 888777777777788888887766643 355677887774 3456677776 789999999998886432 233
Q ss_pred HHHHHHHHcC-----------------CCchHHHHHHHHHHHHHHHHhChhhh----hhchHHHHHhhhcCCccHHHHHH
Q 007863 437 LGALCMQWLK-----------------DKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLEMINNPHYLYRMTI 495 (587)
Q Consensus 437 l~~~l~~~l~-----------------d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~~l~~~~~~~r~~a 495 (587)
+++.++..+. .++.++|..++..++.+++.+|.++. ...+++.+...+.|++..+|..+
T Consensus 570 i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a 649 (852)
T 4fdd_A 570 VYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSS 649 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHH
Confidence 4443333321 23677999999999999999987642 26789999999999999999999
Q ss_pred HHHHHHhhcccChH--HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch--HHHHHhHHHHHHHhcCCCC--ccH
Q 007863 496 LQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--SVVEKSIRPCLVELSEDPD--VDV 569 (587)
Q Consensus 496 ~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~--~~V 569 (587)
..+++.++..++.+ .+...++|.+.+.+.+..+.+|..|+++++.++..++. .++...+++.|..++++++ ..+
T Consensus 650 ~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~ 729 (852)
T 4fdd_A 650 FALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTL 729 (852)
T ss_dssp HHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchH
Confidence 99999999877754 35678999999999888999999999999999988865 3666788999998877764 479
Q ss_pred HHHHHHHHHHHHHH
Q 007863 570 RFFATQALQSKDQV 583 (587)
Q Consensus 570 r~~a~~al~~l~~~ 583 (587)
+.+|..++++++..
T Consensus 730 ~~~a~~~igrl~~~ 743 (852)
T 4fdd_A 730 LENTAITIGRLGYV 743 (852)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.6e-35 Score=331.97 Aligned_cols=575 Identities=13% Similarity=0.157 Sum_probs=450.8
Q ss_pred cccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhC---hhhhhhhhccccccc-cCCchHHHHHHHHHhcccccCcCCcch
Q 007863 8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALG---EERTRKELIPFLSEN-NDDDDEVLLAMAEELGVFIPYVGGLEY 83 (587)
Q Consensus 8 ~~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~---~~~~~~~l~p~l~~~-~~~~~~v~~~~~~~l~~~~~~~~~~~~ 83 (587)
-+.+..+++.+.|+|+++|.+|.+.|......-. .+.....+++.+.+. .+.++++|.+++.+++.++..++. .+
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~ 83 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ 83 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH
Confidence 4568999999999999999999988866432110 012234566655553 367889999999999999887664 55
Q ss_pred HhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChh--------hHhhhhHHHHHHhhc-CCCCcchhhHHhhhhhhcc
Q 007863 84 ANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ--------DVVEHFIPLVKRLAA-GEWFTARVSSCGLFHVAYP 154 (587)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~ll~~~~~l~~-~~~~~~r~~a~~l~~~~~~ 154 (587)
.+.+++.+...+.++++.+|..|+.+++.++..+++. ...+.++|.+.+... ++++.+|..++..+..+..
T Consensus 84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 6777887777778889999999999999999998865 256788999988887 4677888888888877664
Q ss_pred CCCH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccC-chhHHHHHHHHHHHHh
Q 007863 155 SAPE---ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALG 230 (587)
Q Consensus 155 ~~~~---~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~-~~~vr~~a~~~l~~l~ 230 (587)
..++ .+.+.+++.+...+.++++.||..++.+++.++...+++. .+.+++.+...+.+. ++.+|..++.+++.++
T Consensus 164 ~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~ 242 (1230)
T 1u6g_C 164 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAIS 242 (1230)
T ss_dssp HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred HhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 3322 3668899999999999999999999999999998766532 334455554444433 3578889999999998
Q ss_pred cccCh--hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcC----------------
Q 007863 231 KLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLR---------------- 290 (587)
Q Consensus 231 ~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~---------------- 290 (587)
...++ ..+.+.++|.+...++|.++.+|..++.+++.++..++... ..+.++|.+...+.
T Consensus 243 ~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~ 322 (1230)
T 1u6g_C 243 RQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENA 322 (1230)
T ss_dssp HHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccccc
Confidence 87765 23457799999999999999999999999999998777543 23345666655442
Q ss_pred ---------------------CChHHHHHHHHHhHHHHHHhhCH--HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhh
Q 007863 291 ---------------------DNEAEVRIAAAGKVTKICRILNP--ELAIQHILPCVKELSSDSSQHVRSALATVIMGMA 347 (587)
Q Consensus 291 ---------------------d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~ 347 (587)
|..|.||.+|+.++..++...+. ..+.+.++|.+...+.|.++.||.+++.++..+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 402 (1230)
T 1u6g_C 323 MDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLL 402 (1230)
T ss_dssp ----------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHH
T ss_pred ccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 12367899999999999987664 4566788899988899999999999999998887
Q ss_pred hhhch---------------------HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch--hhHhhhhHHHHHH
Q 007863 348 PILGK---------------------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVE 404 (587)
Q Consensus 348 ~~~~~---------------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~~~~~l~~ 404 (587)
...+. ..+.+.++|.+.+.++|+++.+|..++..++.++...+. ..+.+.++|.+..
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~ 482 (1230)
T 1u6g_C 403 KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIF 482 (1230)
T ss_dssp HHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHH
T ss_pred HHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHH
Confidence 65432 234566778888889999999999999999999876542 2345778999999
Q ss_pred HhcCCCc--HHHHHHHHHHHHHHHhhChhhH---HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCh-------h--
Q 007863 405 LAEDRHW--RVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP-------D-- 470 (587)
Q Consensus 405 ~~~~~~~--~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-------~-- 470 (587)
.+.|+++ .+|..++..+..+....+++.+ .+.++|.+...++|+++.||..++.+++.+++.+|. .
T Consensus 483 ~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 562 (1230)
T 1u6g_C 483 SLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT 562 (1230)
T ss_dssp HTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH
T ss_pred HHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence 9999876 8999999999999887777643 456788999999999999999999999999998876 2
Q ss_pred hhhhchHHHHHhhh--cCCccHHHHHHHHHHHHhhcccChHH--HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhh-
Q 007863 471 WAMQHIVPQVLEMI--NNPHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV- 545 (587)
Q Consensus 471 ~~~~~~~~~l~~~l--~~~~~~~r~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~- 545 (587)
.+.+.++|.+...+ .|++..+|..++.+++.++...|... +...+++.+...+.+ +..|..++++++.+....
T Consensus 563 ~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~--e~~r~~~~~al~~i~~~~~ 640 (1230)
T 1u6g_C 563 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKN--EITRLTTVKALTLIAGSPL 640 (1230)
T ss_dssp HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTS--SSHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhcc--chhHHHHHHHHHHHHhCcc
Confidence 24578899988888 77888999999999999998877652 457778888777764 468999999999987643
Q ss_pred --chHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863 546 --DQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 586 (587)
Q Consensus 546 --~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~~ 586 (587)
+...+...++|.|...+.|+++.+|.++..+++.+....++
T Consensus 641 ~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~ 683 (1230)
T 1u6g_C 641 KIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSD 683 (1230)
T ss_dssp CCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCT
T ss_pred ccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccc
Confidence 23567789999999999999999999999999999887653
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=2.1e-34 Score=313.07 Aligned_cols=574 Identities=15% Similarity=0.179 Sum_probs=451.0
Q ss_pred HHHHHHHhcCc-cHHHHHHHhhcHHHHHHHhChh-----hhhhhhcccccccc-CC--chHHHHHHHHHhcccccCcCCc
Q 007863 11 IAVLIDELKND-DIQLRLNSIRRLSTIARALGEE-----RTRKELIPFLSENN-DD--DDEVLLAMAEELGVFIPYVGGL 81 (587)
Q Consensus 11 ~~~l~~~l~s~-d~~~R~~a~~~l~~~~~~~~~~-----~~~~~l~p~l~~~~-~~--~~~v~~~~~~~l~~~~~~~~~~ 81 (587)
+..+++.+.++ |+.+|..|+..+..++..++++ .....++|.+...+ ++ +.+||..++++++.+..+++..
T Consensus 136 l~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 215 (861)
T 2bpt_A 136 MKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN 215 (861)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888 9999999999999998877653 23445666665543 33 6789999999998876654421
Q ss_pred ----chHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChh--hHhh-hhHHHHHHhhcCCCCcchhhHHhhhhhhcc
Q 007863 82 ----EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ--DVVE-HFIPLVKRLAAGEWFTARVSSCGLFHVAYP 154 (587)
Q Consensus 82 ----~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~-~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~ 154 (587)
.....+++.+...+.++++.+|..+++++..+++..+.. .... .+++++.....+.+..+|..++..+..+..
T Consensus 216 ~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~ 295 (861)
T 2bpt_A 216 MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICE 295 (861)
T ss_dssp HTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred ccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 123457777778888899999999999999999876532 1122 566777677777778888888887766544
Q ss_pred CC-----------------C---HHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 007863 155 SA-----------------P---EALKTELRTIYRQLCQD-------DMPMVRRSAATNLGKFAATVEAAHLKSEIMSIF 207 (587)
Q Consensus 155 ~~-----------------~---~~~~~~l~~~l~~l~~~-------~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l 207 (587)
.. . ......++|.+...+.+ +++.+|..+..+|+.++...++ ...+.+++.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l 374 (861)
T 2bpt_A 296 EEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFV 374 (861)
T ss_dssp HHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHH
T ss_pred HHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH-hHHHHHHHHH
Confidence 31 1 12346677777766653 4578999999999999998874 6678899999
Q ss_pred HHhcccCchhHHHHHHHHHHHHhcccCh---hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC----CCcccc
Q 007863 208 EELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRSD 280 (587)
Q Consensus 208 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~ 280 (587)
.+.+++.++.+|..++.+++.+++...+ ....+.++|.+...+.|+++.||..++.+++.++..++. ......
T Consensus 375 ~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 454 (861)
T 2bpt_A 375 EQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPG 454 (861)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHH
T ss_pred HHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence 9999999999999999999999977653 234566888999999999999999999999999988764 233456
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---H---HHHHhHHHHHhHhcC--CCcHHHHHHHHHHHHhhhhhhch
Q 007863 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---E---LAIQHILPCVKELSS--DSSQHVRSALATVIMGMAPILGK 352 (587)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~---~~~~~~~~~l~~~~~--d~~~~vr~~a~~~l~~l~~~~~~ 352 (587)
++|.+...++|+ +.||..++.++..+++.+++ + .+.+.+++.+.+.+. |.++.+|..++.+++.++...+.
T Consensus 455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 455 VVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp HHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence 888888889887 89999999999999998762 1 455778888888886 44589999999999999988775
Q ss_pred H--HHHHhHHHHHHHhcCC---------------CChHHHHHHHHHhHHhhhhhchh--hHhhhhHHHHHHHhcCCCc-H
Q 007863 353 D--ATIEQLLPIFLSLLKD---------------EFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHW-R 412 (587)
Q Consensus 353 ~--~~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~~~~~-~ 412 (587)
+ .+...++|.+...+.+ ....+|..++.++..++..+|.. .+.+.++|.+...+.+.++ .
T Consensus 534 ~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 613 (861)
T 2bpt_A 534 TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAF 613 (861)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCc
Confidence 3 2445666766665542 24568899999999999888764 3456788888888888877 9
Q ss_pred HHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCc
Q 007863 413 VRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPH 488 (587)
Q Consensus 413 vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~ 488 (587)
+|..++..++.++...+..+ +.+.++|.+...+.++++.+|..++.+++.++..+|..+ +...++|.+.+.+.+++
T Consensus 614 v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 693 (861)
T 2bpt_A 614 IEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPN 693 (861)
T ss_dssp THHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCcc
Confidence 99999999999998887653 457789999999999999999999999999999888653 45778888888887765
Q ss_pred --cHHHHHHHHHHHHhhcccChH--HHHHhHHHHHHhhcCCCC-----------ccHHHHHHHHHHHHHhhhch-----H
Q 007863 489 --YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRV-----------PNIKFNVAKVLQSLIPIVDQ-----S 548 (587)
Q Consensus 489 --~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~-----------~~vR~~a~~~l~~l~~~~~~-----~ 548 (587)
..+|..++.+++.++..+|.. .+.+.++|.+...+.... ..+|..++++++.++..++. .
T Consensus 694 ~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~ 773 (861)
T 2bpt_A 694 ARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALF 773 (861)
T ss_dssp CCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHG
T ss_pred ccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 789999999999999887765 357889999988876422 46899999999999988762 2
Q ss_pred HHHHhHHHHHHHhcCCC----CccHHHHHHHHHHHHHHHh-hc
Q 007863 549 VVEKSIRPCLVELSEDP----DVDVRFFATQALQSKDQVM-MS 586 (587)
Q Consensus 549 ~~~~~i~~~l~~l~~d~----~~~Vr~~a~~al~~l~~~~-~~ 586 (587)
.+...+++.+...+.|+ ++.||..|..+++.+++.+ |.
T Consensus 774 ~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~ 816 (861)
T 2bpt_A 774 PYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDG 816 (861)
T ss_dssp GGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCc
Confidence 45566777777777774 8899999999999999988 54
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.3e-34 Score=314.76 Aligned_cols=572 Identities=12% Similarity=0.098 Sum_probs=451.3
Q ss_pred HHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccC-C-chHHHHHHHHHhcccccCcCC-----cchH
Q 007863 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENND-D-DDEVLLAMAEELGVFIPYVGG-----LEYA 84 (587)
Q Consensus 12 ~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~-~-~~~v~~~~~~~l~~~~~~~~~-----~~~~ 84 (587)
..+++.|.++++.+|..+.+.+..++...+|...|++++|.+.+... + ++.+|..+..+++.+....+. ..+.
T Consensus 98 ~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 177 (861)
T 2bpt_A 98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS 177 (861)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Confidence 46778899999999999999999999888776679999999988654 4 678888888888887765443 2356
Q ss_pred hhhhhHHHhhhcCc--hhHHHHHHHHHHHHHHhhcChh----hHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCH
Q 007863 85 NVLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMREQ----DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE 158 (587)
Q Consensus 85 ~~l~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~~~----~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~ 158 (587)
..+++.+...+.++ ++.||..|++++..+...++.. .....+++.+.+...++++.+|..++..+..+....++
T Consensus 178 ~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~ 257 (861)
T 2bpt_A 178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT 257 (861)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 67778877777777 8999999999999986544321 12356788888888888888998888877776544332
Q ss_pred ---HHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh-------------------hhhHHHHHHHHHHhccc--
Q 007863 159 ---ALKT-ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-------------------AHLKSEIMSIFEELTQD-- 213 (587)
Q Consensus 159 ---~~~~-~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-------------------~~~~~~i~~~l~~l~~d-- 213 (587)
.+.. .+++.+...+.|.++.+|..+++.+..++..... ..+...++|.+...+.+
T Consensus 258 ~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~ 337 (861)
T 2bpt_A 258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337 (861)
T ss_dssp GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2444 7888888889999999999999999998876421 12335677777766653
Q ss_pred -----CchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC---cccchHHHH
Q 007863 214 -----DQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAY 285 (587)
Q Consensus 214 -----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l 285 (587)
+++.+|..+..++..++..++. ...+.+++.+.+.+++.+|.+|..++.+++.++...+... ..+.++|.+
T Consensus 338 ~d~~d~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l 416 (861)
T 2bpt_A 338 EDPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI 416 (861)
T ss_dssp CC-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred cccccccCcHHHHHHHHHHHHHHHccH-hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3468999999999999988763 3567788999999999999999999999999875433111 123578888
Q ss_pred HHhcCCChHHHHHHHHHhHHHHHHhhCH----HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch------HHH
Q 007863 286 VRLLRDNEAEVRIAAAGKVTKICRILNP----ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK------DAT 355 (587)
Q Consensus 286 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~------~~~ 355 (587)
...++|+++.||..++.+++.++..+++ ..+.+.++|.+.+.++|+ +.||..++.++..++..++. ..+
T Consensus 417 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~ 495 (861)
T 2bpt_A 417 LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF 495 (861)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence 8999999999999999999999988764 345678899998888886 99999999999999887651 235
Q ss_pred HHhHHHHHHHhcCC--CChHHHHHHHHHhHHhhhhhchhh--HhhhhHHHHHHHhcC---------------CCcHHHHH
Q 007863 356 IEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAED---------------RHWRVRLA 416 (587)
Q Consensus 356 ~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~i~~~~~~~~--~~~~~~~~l~~~~~~---------------~~~~vr~~ 416 (587)
.+.+++.+...+.+ .++.+|..++.+++.++...+.+. +...++|.+.+.+.+ ....+|..
T Consensus 496 ~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 575 (861)
T 2bpt_A 496 YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSN 575 (861)
T ss_dssp HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHH
Confidence 56778888888874 448999999999999998877542 334566666655442 24568889
Q ss_pred HHHHHHHHHHhhChh--hHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCccHH
Q 007863 417 IIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLY 491 (587)
Q Consensus 417 ~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~~~~ 491 (587)
++..++.++...|.. .+.+.+++.+...+++.++ .+|+.++.+++.++...|.++ +.+.++|.+.+.++++++.+
T Consensus 576 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v 655 (861)
T 2bpt_A 576 ILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPV 655 (861)
T ss_dssp HHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHH
Confidence 999999999888764 3457788989999888877 899999999999999888764 45789999999998889999
Q ss_pred HHHHHHHHHHhhcccChH--HHHHhHHHHHHhhcCCCC--ccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCC
Q 007863 492 RMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDP 565 (587)
Q Consensus 492 r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~--~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~ 565 (587)
|..++.+++.++..+|.. .+...+++.+...+.+++ +.+|..++.+++.++..++.. .+.+.++|.+.+.+...
T Consensus 656 r~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~ 735 (861)
T 2bpt_A 656 SITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTK 735 (861)
T ss_dssp HHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC
Confidence 999999999999887754 357788999999888865 899999999999999888764 55678888888865532
Q ss_pred C-----------ccHHHHHHHHHHHHHHHhh
Q 007863 566 D-----------VDVRFFATQALQSKDQVMM 585 (587)
Q Consensus 566 ~-----------~~Vr~~a~~al~~l~~~~~ 585 (587)
. ..+|..+.+++..+...+|
T Consensus 736 ~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~ 766 (861)
T 2bpt_A 736 PENGTLEALDYQIKVLEAVLDAYVGIVAGLH 766 (861)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1 4689999999999988776
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=6.6e-35 Score=327.03 Aligned_cols=571 Identities=14% Similarity=0.190 Sum_probs=446.3
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccc-cCCchHHHHHHHHHhcccccCcCCc--------
Q 007863 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN-NDDDDEVLLAMAEELGVFIPYVGGL-------- 81 (587)
Q Consensus 11 ~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~-~~~~~~v~~~~~~~l~~~~~~~~~~-------- 81 (587)
+..+++.|.+.++.+|..|+..++.++..+++ .....+++.+.+. .++++.+|..++.+++.++..++..
T Consensus 50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~ 128 (1230)
T 1u6g_C 50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA 128 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHH
Confidence 56688899999999999999999999887765 4556778777664 4677899999999999988776643
Q ss_pred chHhhhhhHHHhhhc-CchhHHHHHHHHHHHHHHhhcChh--hHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCH
Q 007863 82 EYANVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMREQ--DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE 158 (587)
Q Consensus 82 ~~~~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~ 158 (587)
.+.+.++|.+...+. ++++.+|..|+.++..+++..+.. .....+++.+.....++...+|..++..++.+....++
T Consensus 129 ~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~ 208 (1230)
T 1u6g_C 129 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN 208 (1230)
T ss_dssp HHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH
Confidence 257888998888877 588999999999999999765431 12355677777777777788999999999888877765
Q ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh
Q 007863 159 ALKTELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 235 (587)
Q Consensus 159 ~~~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (587)
.....+++.+...+. +.++.+|..++++++.++...+. ..+.+.++|.+...++|+++.+|..+..+++.+....+.
T Consensus 209 ~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 209 IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH
Confidence 544445555544433 33457899999999999988765 235577899999999999999999999999999987765
Q ss_pred h--hhhhchHHHHHHhcC-------------------------------------CCchHHHHHHHHHHHHHHHHhCC--
Q 007863 236 Q--DCVAHILPVIVNFSQ-------------------------------------DKSWRVRYMVANQLYELCEAVGP-- 274 (587)
Q Consensus 236 ~--~~~~~l~~~l~~~~~-------------------------------------d~~~~vR~~a~~~l~~l~~~~~~-- 274 (587)
+ .+.+.++|.+.+.+. |.+|.+|..|+.+++.++...+.
T Consensus 289 ~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~ 368 (1230)
T 1u6g_C 289 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML 368 (1230)
T ss_dssp CCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHH
Confidence 3 355666776655442 23588999999999999875443
Q ss_pred CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---------------------HHHHHhHHHHHhHhcCCCcH
Q 007863 275 EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---------------------ELAIQHILPCVKELSSDSSQ 333 (587)
Q Consensus 275 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------------------~~~~~~~~~~l~~~~~d~~~ 333 (587)
......++|.+...++|.+++||..++.++..+....+. ..+.+.+++.+.+.++|++|
T Consensus 369 ~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~ 448 (1230)
T 1u6g_C 369 PEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV 448 (1230)
T ss_dssp HHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCH
Confidence 223456788888889999999999999999999886642 23446677777888999999
Q ss_pred HHHHHHHHHHHhhhhhhch--HHHHHhHHHHHHHhcCCCCh--HHHHHHHHHhHHhhhhhchhh---HhhhhHHHHHHHh
Q 007863 334 HVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFP--DVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELA 406 (587)
Q Consensus 334 ~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~i~~~~~~~~---~~~~~~~~l~~~~ 406 (587)
.+|.+++.+++.++...+. ..+.+.++|.+...++|..+ .+|..++..+..+....+.+. +.+.++|.+...+
T Consensus 449 ~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l 528 (1230)
T 1u6g_C 449 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV 528 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH
Confidence 9999999999998876542 23567889999999999875 999999999999988777653 4567899999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhCh---------hhHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHHHHhChhh--hh
Q 007863 407 EDRHWRVRLAIIEYIPLLASQLGV---------GFFDDKLGALCMQWL--KDKVYSIRDAAANNVKRLAEEFGPDW--AM 473 (587)
Q Consensus 407 ~~~~~~vr~~~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~--~~ 473 (587)
.|++|++|..++..++.+++.++. ..+.+.++|.++..+ .|.+..+|..|+.+++.++...|..+ +.
T Consensus 529 ~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~ 608 (1230)
T 1u6g_C 529 GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDL 608 (1230)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHH
T ss_pred cccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhH
Confidence 999999999999999999988775 245678999999988 78899999999999999999888764 23
Q ss_pred hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccC---hHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHH
Q 007863 474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG---SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV 550 (587)
Q Consensus 474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~ 550 (587)
..+++.+...+.+ ...|..++.+++.++.... ...+...++|.+...+.+.+..+|.+++.+++.++...+....
T Consensus 609 ~~~l~~L~~~l~~--e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~ 686 (1230)
T 1u6g_C 609 PNTLQIFLERLKN--EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLT 686 (1230)
T ss_dssp HHHHHHHHHHTTS--SSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHhcc--chhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCC
Confidence 5566666665554 3478899999999886432 3567899999999999999999999999999999988764323
Q ss_pred HHhHHHHHHH---hcCCCCccHHHHHHHHHHHHHHHh
Q 007863 551 EKSIRPCLVE---LSEDPDVDVRFFATQALQSKDQVM 584 (587)
Q Consensus 551 ~~~i~~~l~~---l~~d~~~~Vr~~a~~al~~l~~~~ 584 (587)
.+.+.|.+.. +++|+|+.++..+..++..+.+..
T Consensus 687 ~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~ 723 (1230)
T 1u6g_C 687 AAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVY 723 (1230)
T ss_dssp HHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhC
Confidence 3455555544 467889999999988888886543
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=5.6e-33 Score=302.44 Aligned_cols=570 Identities=17% Similarity=0.166 Sum_probs=406.3
Q ss_pred HHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccccc-CC--chHHHHHHHHHhcccccCcCC---cchHhhh
Q 007863 14 LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DD--DDEVLLAMAEELGVFIPYVGG---LEYANVL 87 (587)
Q Consensus 14 l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~--~~~v~~~~~~~l~~~~~~~~~---~~~~~~l 87 (587)
+++.|.+.++.+ ..+.+.++.++...++...|++++|.+.+.. ++ ++.+|..+..+++.+++..++ ..+.+.+
T Consensus 95 ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~l 173 (876)
T 1qgr_A 95 VLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEI 173 (876)
T ss_dssp HHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH
T ss_pred HHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHH
Confidence 667787777777 8888888888887777677888888887754 44 567888888888877664432 2345666
Q ss_pred hhHHHhhhcCc--hhHHHHHHHHHHHHHHhhcChh----hHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCH---
Q 007863 88 LPPLETLCTVE--ETCVRDKAVESLCRIGSQMREQ----DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE--- 158 (587)
Q Consensus 88 ~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~~~----~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~--- 158 (587)
++.+.+.+.++ +..+|..|++++..++..++.. .....+++.+.+...+++..+|..++..+..+....++
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 253 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME 253 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCH
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 67777766665 6788999999888877654422 12234677777777776777888887777666544332
Q ss_pred HHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh-----------------------hhhHHHHHHHHHHhcc--
Q 007863 159 ALKT-ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-----------------------AHLKSEIMSIFEELTQ-- 212 (587)
Q Consensus 159 ~~~~-~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-----------------------~~~~~~i~~~l~~l~~-- 212 (587)
.+.. .+++.+.....+.++.||..+++.+..+++.... ......++|.+...+.
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~ 333 (876)
T 1qgr_A 254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ 333 (876)
T ss_dssp HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcc
Confidence 2334 6777777777888888898888888888765310 0122455666555553
Q ss_pred -----cCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC---CcccchHHH
Q 007863 213 -----DDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRSDVVPA 284 (587)
Q Consensus 213 -----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~ 284 (587)
|+++.+|..+..++..++...++ ...+.+++.+...+.|++|.+|.+++.+++.++...+++ .....++|.
T Consensus 334 ~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~ 412 (876)
T 1qgr_A 334 DENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT 412 (876)
T ss_dssp CSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHHCcH-hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34567888888888888877763 346677888888888888999999988888877543311 112357788
Q ss_pred HHHhcCCChHHHHHHHHHhHHHHHHhhCH----HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc---------
Q 007863 285 YVRLLRDNEAEVRIAAAGKVTKICRILNP----ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--------- 351 (587)
Q Consensus 285 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--------- 351 (587)
+...++|+++.||..|+.+++.++..+++ ..+.+.+++.+...+.|+ +.||..++.+++.++...+
T Consensus 413 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~ 491 (876)
T 1qgr_A 413 LIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQ 491 (876)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcccccccc
Confidence 88888888888999999998888887654 244567788888878775 8888888888888876643
Q ss_pred -------hHHHHHhHHHHHHHhcCCC---ChHHHH---------------------------------------------
Q 007863 352 -------KDATIEQLLPIFLSLLKDE---FPDVRL--------------------------------------------- 376 (587)
Q Consensus 352 -------~~~~~~~l~~~l~~~l~d~---~~~vr~--------------------------------------------- 376 (587)
-..+.+.++|.+...+.+. +..+|.
T Consensus 492 ~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 571 (876)
T 1qgr_A 492 EEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQST 571 (876)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCST
T ss_pred ccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence 1134456777777666543 234444
Q ss_pred -----------HHHHHhHHhhhhhc-hh--hHhhhhHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhhChhh--HHHHHH
Q 007863 377 -----------NIISKLDQVNQVIG-ID--LLSQSLLPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGF--FDDKLG 438 (587)
Q Consensus 377 -----------~a~~~l~~i~~~~~-~~--~~~~~~~~~l~~~~~~~~--~~vr~~~~~~l~~l~~~~~~~~--~~~~l~ 438 (587)
.++.+++.++..+| .. .+.+.++|.+...+.+.+ +.+|..++..++.++...+..+ +.+.++
T Consensus 572 ~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~ 651 (876)
T 1qgr_A 572 SDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFK 651 (876)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44444555554444 21 123456677777776654 6899999999999998776533 346788
Q ss_pred HHHHHHcCCC-chHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcC--CccHHHHHHHHHHHHhhcccChH--HH
Q 007863 439 ALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINN--PHYLYRMTILQAISLLAPVMGSE--IT 511 (587)
Q Consensus 439 ~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~~~~--~~ 511 (587)
|.+...+.+. ++.+|..++.+++.++...|... +.+.+++.+.+.+.+ .+..+|..++.+++.++..+|.+ .+
T Consensus 652 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~ 731 (876)
T 1qgr_A 652 PFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKY 731 (876)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGG
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHH
Confidence 9999999887 89999999999999999887653 346788888888776 45789999999999999877765 35
Q ss_pred HHhHHHHHHhhcCCCC-----------ccHHHHHHHHHHHHHhhhch------------HHHHHhHHHHHHHhcCCC--C
Q 007863 512 CSQLLPVVINASKDRV-----------PNIKFNVAKVLQSLIPIVDQ------------SVVEKSIRPCLVELSEDP--D 566 (587)
Q Consensus 512 ~~~~l~~l~~~l~d~~-----------~~vR~~a~~~l~~l~~~~~~------------~~~~~~i~~~l~~l~~d~--~ 566 (587)
.+.++|.+...++++. ..+|..+++++..++..++. ..+...+++.+..+..|+ +
T Consensus 732 l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 811 (876)
T 1qgr_A 732 LEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHT 811 (876)
T ss_dssp HHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCC
T ss_pred HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 7888898888877543 27999999999988877643 134456667777776777 6
Q ss_pred ccHHHHHHHHHHHHHHHhhc
Q 007863 567 VDVRFFATQALQSKDQVMMS 586 (587)
Q Consensus 567 ~~Vr~~a~~al~~l~~~~~~ 586 (587)
..||..|..+++.+.+.+|.
T Consensus 812 ~~vr~~a~~~l~~l~~~~~~ 831 (876)
T 1qgr_A 812 DGVVACAAGLIGDLCTAFGK 831 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 78999999999999988864
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=8.7e-32 Score=293.08 Aligned_cols=574 Identities=14% Similarity=0.157 Sum_probs=425.5
Q ss_pred HHHHHHHhcCc--cHHHHHHHhhcHHHHHHHhChhh---hhhhhcccccccc-CC--chHHHHHHHHHhcccccCcCCcc
Q 007863 11 IAVLIDELKND--DIQLRLNSIRRLSTIARALGEER---TRKELIPFLSENN-DD--DDEVLLAMAEELGVFIPYVGGLE 82 (587)
Q Consensus 11 ~~~l~~~l~s~--d~~~R~~a~~~l~~~~~~~~~~~---~~~~l~p~l~~~~-~~--~~~v~~~~~~~l~~~~~~~~~~~ 82 (587)
+..+++.+.++ ++.+|..|++.+..++..++++. ..+.++|.+.+.+ ++ +.++|..+.++++.++.+++...
T Consensus 130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~ 209 (876)
T 1qgr_A 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF 209 (876)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888 99999999999999987765432 2344566655543 33 57899999999988776554211
Q ss_pred ----hHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChh---hHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccC
Q 007863 83 ----YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ---DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPS 155 (587)
Q Consensus 83 ----~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~ 155 (587)
....+++.+...+.+++..+|..+++++..+++..+.. .+...+++++.....+++..+|..++..+..+...
T Consensus 210 ~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 289 (876)
T 1qgr_A 210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (876)
T ss_dssp TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 11346777777778889999999999999999876532 22226777777777777777787777665554321
Q ss_pred C----------------------C--HHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 007863 156 A----------------------P--EALKTELRTIYRQLCQ-------DDMPMVRRSAATNLGKFAATVEAAHLKSEIM 204 (587)
Q Consensus 156 ~----------------------~--~~~~~~l~~~l~~l~~-------~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~ 204 (587)
. . ....+.+++.+...+. ++++.+|.++..+++.++...++ ...+.++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l 368 (876)
T 1qgr_A 290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVL 368 (876)
T ss_dssp HHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHHH
T ss_pred HHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-hhHHHHH
Confidence 0 0 1133566777766653 45688999999999999998874 6678899
Q ss_pred HHHHHhcccCchhHHHHHHHHHHHHhcccChh---hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC----Cc
Q 007863 205 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PT 277 (587)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~ 277 (587)
+.+...++|+++.+|..++.+++.++...+++ .+.+.++|.+...++|+++.||..|+.+++.++...+.. ..
T Consensus 369 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (876)
T 1qgr_A 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (876)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH
Confidence 99999999999999999999999999877632 345678999999999999999999999999999876542 23
Q ss_pred ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC----------------HHHHHHhHHHHHhHhcCCC---cHHHHH-
Q 007863 278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN----------------PELAIQHILPCVKELSSDS---SQHVRS- 337 (587)
Q Consensus 278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----------------~~~~~~~~~~~l~~~~~d~---~~~vr~- 337 (587)
...+++.+...++|+ +.||..++.+++.++...+ -..+.+.++|.+.+.+.+. +..+|.
T Consensus 449 l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~ 527 (876)
T 1qgr_A 449 LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSS 527 (876)
T ss_dssp HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHH
Confidence 446788888888886 8999999999999988754 1134566777777666543 233444
Q ss_pred -------------------------------------------------------HHHHHHHhhhhhhc-hH--HHHHhH
Q 007863 338 -------------------------------------------------------ALATVIMGMAPILG-KD--ATIEQL 359 (587)
Q Consensus 338 -------------------------------------------------------~a~~~l~~l~~~~~-~~--~~~~~l 359 (587)
.++.+++.++..++ .. .+.+.+
T Consensus 528 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l 607 (876)
T 1qgr_A 528 AYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVV 607 (876)
T ss_dssp HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHH
T ss_pred HHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHH
Confidence 44444444444444 21 134557
Q ss_pred HHHHHHhcCCCC--hHHHHHHHHHhHHhhhhhchh--hHhhhhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhChhh--
Q 007863 360 LPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF-- 432 (587)
Q Consensus 360 ~~~l~~~l~d~~--~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~-- 432 (587)
+|.+...+++.. +.+|..++.+++.++...|.. .+.+.++|.+...+.+. ++.+|..++..++.++...+...
T Consensus 608 ~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 687 (876)
T 1qgr_A 608 MASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIP 687 (876)
T ss_dssp HHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 777888887764 479999999999999877653 33466888888888887 89999999999999998887532
Q ss_pred HHHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCc-----------cHHHHHHHH
Q 007863 433 FDDKLGALCMQWLKD--KVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPH-----------YLYRMTILQ 497 (587)
Q Consensus 433 ~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~-----------~~~r~~a~~ 497 (587)
+.+.+++.+...+.+ .+.++|..++.+++.++..+|.++ +.+.++|.+.+.+.++. ..+|..++.
T Consensus 688 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~ 767 (876)
T 1qgr_A 688 FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLE 767 (876)
T ss_dssp HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHH
Confidence 346788888888876 467899999999999999888874 34667777777665432 278999999
Q ss_pred HHHHhhcccCh------------HHHHHhHHHHHHhhcCCC--CccHHHHHHHHHHHHHhhhch-H--HH-HHhHHHHHH
Q 007863 498 AISLLAPVMGS------------EITCSQLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQ-S--VV-EKSIRPCLV 559 (587)
Q Consensus 498 ~l~~l~~~~~~------------~~~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~-~--~~-~~~i~~~l~ 559 (587)
++..+...++. ..+.+.+++.+.....|+ +..+|..|+.+|+.++..++. . .+ .+.+++.+.
T Consensus 768 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll 847 (876)
T 1qgr_A 768 AYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELL 847 (876)
T ss_dssp HHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHH
Confidence 88877765432 235667777777776777 789999999999999999876 2 23 445677777
Q ss_pred H-hcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863 560 E-LSEDPDVDVRFFATQALQSKDQVMMS 586 (587)
Q Consensus 560 ~-l~~d~~~~Vr~~a~~al~~l~~~~~~ 586 (587)
+ .+.|++++||..|..|++.+++.=.+
T Consensus 848 ~~~l~~~~~~~r~~a~~a~~~~~~~~~~ 875 (876)
T 1qgr_A 848 TEGRRSKTNKAKTLARWATKELRKLKNQ 875 (876)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhhcCCHhHHHHHHHHHHHHHHhhcC
Confidence 7 88899999999999999999976443
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.95 E-value=3.6e-24 Score=215.25 Aligned_cols=389 Identities=15% Similarity=0.151 Sum_probs=299.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcc-------------
Q 007863 166 TIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL------------- 232 (587)
Q Consensus 166 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~------------- 232 (587)
.++.. +.++++.+|+.|.+.|..+...- .+.+...++.++.. .+.++.+|..|...|..+.+.
T Consensus 5 ~~L~~-~~s~d~~~r~~Ae~~L~~~~~~~-~~~~~~~L~~il~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~ 80 (462)
T 1ibr_B 5 TILEK-TVSPDRLELEAAQKFLERAAVEN-LPTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (462)
T ss_dssp HHHHH-TTCSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHHHH-hcCCCHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence 33434 45788999999999999865421 12344444444332 223688999999999988643
Q ss_pred --cChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC--hHHHHHHHHHhHHHHH
Q 007863 233 --LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN--EAEVRIAAAGKVTKIC 308 (587)
Q Consensus 233 --~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~ 308 (587)
++ +.....+...+...+.+.++.+ ..++.+++.++....+...+++++|.+...++++ ++.+|..++.+++.++
T Consensus 81 ~~l~-~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~ 158 (462)
T 1ibr_B 81 LAID-ANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (462)
T ss_dssp HTSC-HHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hcCC-HHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 22 2234556777777888888888 9999999999987654445788999999999888 8999999999999999
Q ss_pred HhhCHH---HHHHhHHHHHhHhcCCC--cHHHHHHHHHHHHhhhhhhch----HHHHHhHHHHHHHhcCCCChHHHHHHH
Q 007863 309 RILNPE---LAIQHILPCVKELSSDS--SQHVRSALATVIMGMAPILGK----DATIEQLLPIFLSLLKDEFPDVRLNII 379 (587)
Q Consensus 309 ~~~~~~---~~~~~~~~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~ 379 (587)
+...++ .+.+.+++.+..+++|+ ++.||..++++++.+...+.. ....+.+++.+...+.+.++.+|..++
T Consensus 159 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~ 238 (462)
T 1ibr_B 159 QDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238 (462)
T ss_dssp HHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 876432 34467888899999888 799999999999987654432 122345678888888999999999999
Q ss_pred HHhHHhhhhhchh--hHhh-hhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-------------------C-hhh---H
Q 007863 380 SKLDQVNQVIGID--LLSQ-SLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-------------------G-VGF---F 433 (587)
Q Consensus 380 ~~l~~i~~~~~~~--~~~~-~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~-------------------~-~~~---~ 433 (587)
.++..++...+.. .+.+ .+++.+...+.+.+..+|..+++.+..++... . ... +
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (462)
T 1ibr_B 239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA 318 (462)
T ss_dssp HHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHH
Confidence 9999998776532 2345 78888888889999999999999998887652 0 111 2
Q ss_pred HHHHHHHHHHHcC-------CCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhccc
Q 007863 434 DDKLGALCMQWLK-------DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM 506 (587)
Q Consensus 434 ~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~ 506 (587)
.+.++|.++..+. |.+|.+|..|..+++.++..+|. .....++|.+...+.+++|.+|.+++.+++.++...
T Consensus 319 ~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~ 397 (462)
T 1ibr_B 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP 397 (462)
T ss_dssp HHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred hhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCC
Confidence 3667888887774 34689999999999999999984 455788999999999999999999999999999865
Q ss_pred ChH---HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH----HHHHhHHHHHHHh
Q 007863 507 GSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVEL 561 (587)
Q Consensus 507 ~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l 561 (587)
..+ .+...++|.+...++|+++.||..|+.+|+.++..+++. .+...++|.|.+.
T Consensus 398 ~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~ 459 (462)
T 1ibr_B 398 EPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEG 459 (462)
T ss_dssp CTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 532 345789999999999999999999999999999987763 3445566665543
No 12
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.94 E-value=1.5e-24 Score=222.51 Aligned_cols=505 Identities=13% Similarity=0.152 Sum_probs=342.7
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccc-cCCchHHHHHHHHHhcccccCcCCcchHhhhh
Q 007863 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN-NDDDDEVLLAMAEELGVFIPYVGGLEYANVLL 88 (587)
Q Consensus 10 ~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~-~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~ 88 (587)
.+..+.+.|.++|...|..++..+-.+ ...|.+. ..+.+.+.+. .+++.++++.+.-.+..+++. ..+......
T Consensus 14 e~~~i~~~L~~~~~~~k~~~~~kli~~-~~~G~d~--~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~e~~~l~~ 88 (591)
T 2vgl_B 14 EIFELKAELNNEKKEKRKEAVKKVIAA-MTVGKDV--SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QPDMAIMAV 88 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHH-HHTTCCC--GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SHHHHHTTH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHH-HHCCCCh--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--CchHHHHHH
Confidence 578888889998888888887776543 3345432 1222222222 233445554444444333221 112222233
Q ss_pred hHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHH
Q 007863 89 PPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIY 168 (587)
Q Consensus 89 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l 168 (587)
+.+.+.+.++|+.+|..|+++++.+. .++..+.+.+.+
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~------------------------------------------~~~~~~~l~~~l 126 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIR------------------------------------------VDKITEYLCEPL 126 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCC------------------------------------------SGGGHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCC------------------------------------------hHHHHHHHHHHH
Confidence 44444445556666655554444332 234455667777
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChh---hhhhchHHH
Q 007863 169 RQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ---DCVAHILPV 245 (587)
Q Consensus 169 ~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~ 245 (587)
..++.|+++.||+.|+.+++.++...++......+++.+..+++|+++.|+..|+.++..++..-+.. ......++.
T Consensus 127 ~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~ 206 (591)
T 2vgl_B 127 RKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINK 206 (591)
T ss_dssp HHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHH
T ss_pred HHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHH
Confidence 88889999999999999999998843321111358889999999999999999999999988764421 112234555
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHhCCC-CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh--CHH---HHHHh
Q 007863 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL--NPE---LAIQH 319 (587)
Q Consensus 246 l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~---~~~~~ 319 (587)
+.+.+.+.++..+...++.++.++ +.+ .....+++.+..++++.++.|+..|++++..+...+ +++ ...+.
T Consensus 207 Ll~~l~~~~~~~q~~il~~l~~l~---~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~ 283 (591)
T 2vgl_B 207 LLTALNECTEWGQIFILDCLSNYN---PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKK 283 (591)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHTSC---CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHH
T ss_pred HHHcCCCCCchHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 555566777778877777665443 111 112357888888999999999999999999986543 222 22345
Q ss_pred HHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhH
Q 007863 320 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399 (587)
Q Consensus 320 ~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~ 399 (587)
+.+.+..++ +++..+|..++.+++.+....+. .+.+.+. .+....+|+ ..||..++..+..++..-+ .+.++
T Consensus 284 ~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-~~~~~~~-~~~~~~~d~-~~Ir~~al~~L~~l~~~~n----v~~iv 355 (591)
T 2vgl_B 284 LAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE-ILKQEIK-VFFVKYNDP-IYVKLEKLDIMIRLASQAN----IAQVL 355 (591)
T ss_dssp THHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-TTTTCTT-TTSCCTTSC-HHHHHHHHHHHHHTCCSST----HHHHH
T ss_pred HHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-HHHHHHH-hheeccCCh-HHHHHHHHHHHHHHCChhh----HHHHH
Confidence 556666555 47899999999999998765331 1111111 122223444 9999999998888764322 25678
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHH
Q 007863 400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 479 (587)
Q Consensus 400 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 479 (587)
+.+...+.+.++.+|..++..++.++..++. ..+.+++.+..++.+....++..++.++..+....... .+.+++.
T Consensus 356 ~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~--~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~v~~ 431 (591)
T 2vgl_B 356 AELKEYATEVDVDFVRKAVRAIGRCAIKVEQ--SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK--YESIIAT 431 (591)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCTTHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhChh--HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch--HHHHHHH
Confidence 8888888999999999999999999987643 24678899999999999999999999999998776543 4567888
Q ss_pred HHhhhcC-CccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHH
Q 007863 480 VLEMINN-PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCL 558 (587)
Q Consensus 480 l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l 558 (587)
+.+.+.+ .++.+|.++++++|..+..... ...++..+.+.+.+.++.||..++.++..+....+... ...+...+
T Consensus 432 L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~-~~~i~~ll 507 (591)
T 2vgl_B 432 LCENLDSLDEPDARAAMIWIVGEYAERIDN---ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET-QELVQQVL 507 (591)
T ss_dssp HHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT-HHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHcccccccC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH-HHHHHHHH
Confidence 8777754 5678999999999999886643 24667777777778899999999999999988765321 23344455
Q ss_pred HHhcCC-CCccHHHHHHHHHHHH
Q 007863 559 VELSED-PDVDVRFFATQALQSK 580 (587)
Q Consensus 559 ~~l~~d-~~~~Vr~~a~~al~~l 580 (587)
..+..| .+++||.+|...+.-+
T Consensus 508 ~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 508 SLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTT
T ss_pred HHhhhcCCChHHHHHHHHHHHHH
Confidence 555566 6889999999877655
No 13
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.93 E-value=1.5e-23 Score=214.43 Aligned_cols=475 Identities=15% Similarity=0.088 Sum_probs=310.7
Q ss_pred hcccccCcCCcchHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhh
Q 007863 71 LGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFH 150 (587)
Q Consensus 71 l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~ 150 (587)
+++|.++.++..+....++.|..++.++++.+|..|+.+|..++..-.. ...+. .
T Consensus 2 ~~~l~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~---~~~~~-------~--------------- 56 (529)
T 1jdh_A 2 VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS---RHAIM-------R--------------- 56 (529)
T ss_dssp CCSCC----------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHH---HHHHH-------T---------------
T ss_pred hHHHhhcCchhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCcc---HHHHH-------h---------------
Confidence 5677888888777788889999999999999999999999998864211 00000 0
Q ss_pred hhccCCCHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHH
Q 007863 151 VAYPSAPEALKTELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCG 227 (587)
Q Consensus 151 ~~~~~~~~~~~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~ 227 (587)
....++.+..++. ++++.+|..++.+|..+...-.. .......+|.+..+++++++.++..++.+|.
T Consensus 57 ----------~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~ 126 (529)
T 1jdh_A 57 ----------SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 126 (529)
T ss_dssp ----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ----------CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 0112333333332 34677888888888876543111 1112236777888888888888888888888
Q ss_pred HHhcccCh--h-hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC---CCCcccchHHHHHHhcCCCh-HHHHHHH
Q 007863 228 ALGKLLEP--Q-DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRDNE-AEVRIAA 300 (587)
Q Consensus 228 ~l~~~~~~--~-~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-~~vr~~a 300 (587)
.++..-+. . ......+|.+..++.++++.+|..++.+|..++..-. ........++.+..++++.+ ...+..+
T Consensus 127 ~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a 206 (529)
T 1jdh_A 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 206 (529)
T ss_dssp HHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHH
Confidence 88765432 1 1235678888888888889999988888887764100 00112245677777776543 4566667
Q ss_pred HHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHH
Q 007863 301 AGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNI 378 (587)
Q Consensus 301 ~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a 378 (587)
..++..++..-... ......++.+..++.+++..++..++.++..++...+.......++|.+..++.+.++++|..+
T Consensus 207 ~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 286 (529)
T 1jdh_A 207 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCA 286 (529)
T ss_dssp HHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHH
Confidence 77777776532211 1224578888888888899999999999988876544333334678889999999999999999
Q ss_pred HHHhHHhhhhhc--hh-hHhhhhHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhCh------hhHHHHHHHHHHHHcCC
Q 007863 379 ISKLDQVNQVIG--ID-LLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV------GFFDDKLGALCMQWLKD 447 (587)
Q Consensus 379 ~~~l~~i~~~~~--~~-~~~~~~~~~l~~~~~~--~~~~vr~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~~l~d 447 (587)
+.+|..++..-. .. ......+|.+..++.+ .++.+|..++..++.++...+. .......+|.+..++.+
T Consensus 287 ~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~ 366 (529)
T 1jdh_A 287 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP 366 (529)
T ss_dssp HHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTST
T ss_pred HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhcc
Confidence 999999875321 11 1223467788777764 4488999999999888643221 11122357788888888
Q ss_pred Cc-hHHHHHHHHHHHHHHHHhCh--hhhhhchHHHHHhhhcCCccHHHHHHHHHHHH----------------------h
Q 007863 448 KV-YSIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLEMINNPHYLYRMTILQAISL----------------------L 502 (587)
Q Consensus 448 ~~-~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~----------------------l 502 (587)
+. +.+|..++.+++.++..-.. ......++|.+.+++.++++.+|..+++++++ +
T Consensus 367 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L 446 (529)
T 1jdh_A 367 PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHIL 446 (529)
T ss_dssp TCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHH
Confidence 76 58999999999988742111 11235678888888887777777766655544 3
Q ss_pred hcccCh--HHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhc--hHHHHHhHHHHHHHhcCCCCccHHHHHHHHHH
Q 007863 503 APVMGS--EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSVVEKSIRPCLVELSEDPDVDVRFFATQALQ 578 (587)
Q Consensus 503 ~~~~~~--~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~ 578 (587)
+..... .......++.+..++.|+++++|..++.++..+...-. ........++.|.++..+++++||..|..++.
T Consensus 447 ~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~ 526 (529)
T 1jdh_A 447 ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526 (529)
T ss_dssp TTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred hcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHH
Confidence 321110 01234567899999999999999999999999874311 11223456789999999999999999999998
Q ss_pred HH
Q 007863 579 SK 580 (587)
Q Consensus 579 ~l 580 (587)
.+
T Consensus 527 ~l 528 (529)
T 1jdh_A 527 RM 528 (529)
T ss_dssp HH
T ss_pred hc
Confidence 76
No 14
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.92 E-value=3.9e-23 Score=207.71 Aligned_cols=352 Identities=15% Similarity=0.139 Sum_probs=242.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccC--chhHHHHHHHHHHHHhcc
Q 007863 155 SAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD--QDSVRLLAVEGCGALGKL 232 (587)
Q Consensus 155 ~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~--~~~vr~~a~~~l~~l~~~ 232 (587)
..+++.+..+.+.+...+.++++.+ ..++.+++.++........++.++|.+...++++ ++.+|..++.+++.+.+.
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~ 160 (462)
T 1ibr_B 82 AIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160 (462)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Confidence 3556677778887888888888889 9999999999987644446788999999999888 889999999999999886
Q ss_pred cCh---hhhhhchHHHHHHhcCCC--chHHHHHHHHHHHHHHHHhCC----CCcccchHHHHHHhcCCChHHHHHHHHHh
Q 007863 233 LEP---QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP----EPTRSDVVPAYVRLLRDNEAEVRIAAAGK 303 (587)
Q Consensus 233 ~~~---~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 303 (587)
... ....+.+++.+...+.|. ++.||..|+++++.+...++. ......+++.+...+.+.++++|..++++
T Consensus 161 ~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~ 240 (462)
T 1ibr_B 161 IDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQN 240 (462)
T ss_dssp SCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred CCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 632 234566888899999988 799999999999886543221 11112357777788888899999999999
Q ss_pred HHHHHHhhCHH--HHHH-hHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHH
Q 007863 304 VTKICRILNPE--LAIQ-HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIIS 380 (587)
Q Consensus 304 l~~l~~~~~~~--~~~~-~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~ 380 (587)
|..++...+.. .+.. .+++.+...++|.++.||..++..+..++..... ....-.+.. ..+.....
T Consensus 241 l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~----------~~~~~~~~~-~~~~~~~~ 309 (462)
T 1ibr_B 241 LVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD----------LAIEASEAA-EQGRPPEH 309 (462)
T ss_dssp HHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH----------HHHHHCCTT-CSSSCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH----------HHHhccccc-ccCCCccc
Confidence 99998876543 3345 7788887888889999999999988887643200 000000000 00000000
Q ss_pred HhHHhhhhhchhhHhhhhHHHHHHHh-------cCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHH
Q 007863 381 KLDQVNQVIGIDLLSQSLLPAIVELA-------EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIR 453 (587)
Q Consensus 381 ~l~~i~~~~~~~~~~~~~~~~l~~~~-------~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr 453 (587)
....+. +.+.+.++|.+...+ .+.+|.+|..+...++.++..++ +...+.++|.+...+++++|.+|
T Consensus 310 ~~~~~~-----~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r 383 (462)
T 1ibr_B 310 TSKFYA-----KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYR 383 (462)
T ss_dssp CCCCHH-----HHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHH
T ss_pred hhHHHH-----HHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHH
Confidence 000000 001133444444433 35677788888888888887777 34556777878778888888888
Q ss_pred HHHHHHHHHHHHHhChh---hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh----HHHHHhHHHHHHhhcC
Q 007863 454 DAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS----EITCSQLLPVVINASK 524 (587)
Q Consensus 454 ~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~~l~~l~~~l~ 524 (587)
.+|+.+++.++...+.+ .....++|.+...+.|+++.+|.+|+++++.++..++. ..+.+.+++.++..++
T Consensus 384 ~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 88888888877655421 24567788888888888888888888888888776554 3577778887776654
No 15
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.92 E-value=1.8e-22 Score=210.28 Aligned_cols=474 Identities=16% Similarity=0.103 Sum_probs=323.8
Q ss_pred cccCcCCcchHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhc
Q 007863 74 FIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAY 153 (587)
Q Consensus 74 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~ 153 (587)
|..+.++.......++.|..++.++++.+|..|+.+|..++......... .
T Consensus 2 l~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i----------~------------------- 52 (644)
T 2z6h_A 2 LINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI----------M------------------- 52 (644)
T ss_dssp ----------CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHH----------T-------------------
T ss_pred cccccchhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHH----------H-------------------
Confidence 34455555555667888888888999999999999999998764321100 0
Q ss_pred cCCCHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHh
Q 007863 154 PSAPEALKTELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALG 230 (587)
Q Consensus 154 ~~~~~~~~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~ 230 (587)
.....++.+...+. ++++.+|..++.+|..+...-.. .......+|.+..+++++++.+|..|+.+|..++
T Consensus 53 ------~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~ 126 (644)
T 2z6h_A 53 ------RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 126 (644)
T ss_dssp ------TCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred ------hccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 00122333333333 34678888888888776543211 1122346778888888888899999999999888
Q ss_pred cccCh---hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCCh-HHHHHHHHHh
Q 007863 231 KLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNE-AEVRIAAAGK 303 (587)
Q Consensus 231 ~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~ 303 (587)
..... .......+|.+..++.+.+++++..++.+|..++...+. .......++.+..++++.+ ..++..++.+
T Consensus 127 ~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~ 206 (644)
T 2z6h_A 127 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV 206 (644)
T ss_dssp HHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred hCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHH
Confidence 76433 112356889999999998999999998888888742100 0112346788888887654 5678888888
Q ss_pred HHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHH
Q 007863 304 VTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 381 (587)
Q Consensus 304 l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 381 (587)
|..++..-... ......++.+.+++.+.+..++..++.++..++...........++|.+..++.+.++.+|..++.+
T Consensus 207 L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~a 286 (644)
T 2z6h_A 207 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI 286 (644)
T ss_dssp HHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHH
Confidence 88887532221 2223578888999999999999999999999986543333334678999999999999999999999
Q ss_pred hHHhhhhhch--h-hHhhhhHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhChh------hHHHHHHHHHHHHcCCCc-
Q 007863 382 LDQVNQVIGI--D-LLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVG------FFDDKLGALCMQWLKDKV- 449 (587)
Q Consensus 382 l~~i~~~~~~--~-~~~~~~~~~l~~~~~~~--~~~vr~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~- 449 (587)
|..++..-.. . ......+|.+..++.+. .+.+|..++..++.++...+.. ......+|.+..++.++.
T Consensus 287 L~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~ 366 (644)
T 2z6h_A 287 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH 366 (644)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCC
T ss_pred HHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCc
Confidence 9998763211 1 12235678888887653 3799999999999886432211 122346788889998875
Q ss_pred hHHHHHHHHHHHHHHHHhCh--hhhhhchHHHHHhhhcCCcc----------------------HHHHHHHHHHHHhhcc
Q 007863 450 YSIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLEMINNPHY----------------------LYRMTILQAISLLAPV 505 (587)
Q Consensus 450 ~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~~~~~----------------------~~r~~a~~~l~~l~~~ 505 (587)
+.+|..++.+++.++..-.. ......++|.+.+++.++++ .++..++.++..++..
T Consensus 367 ~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~ 446 (644)
T 2z6h_A 367 WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD 446 (644)
T ss_dssp HHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC
Confidence 79999999999998742111 12345678888887765433 4556667777766643
Q ss_pred cChH--HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch--HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863 506 MGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 506 ~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~ 581 (587)
.... ......+|.+..++.+.++++|..++.+|..+...-+. .......++.|.+++.+++++||..|..+|..+.
T Consensus 447 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~ 526 (644)
T 2z6h_A 447 VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 526 (644)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 2111 12346789999999999999999999999998754111 1222346788999999999999999999999886
Q ss_pred H
Q 007863 582 Q 582 (587)
Q Consensus 582 ~ 582 (587)
+
T Consensus 527 ~ 527 (644)
T 2z6h_A 527 E 527 (644)
T ss_dssp T
T ss_pred c
Confidence 5
No 16
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.92 E-value=1.1e-22 Score=214.80 Aligned_cols=490 Identities=14% Similarity=0.083 Sum_probs=341.4
Q ss_pred hHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH--H--HHHH
Q 007863 89 PPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA--L--KTEL 164 (587)
Q Consensus 89 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~--~--~~~l 164 (587)
+.+.+.+.+++..+|..+++.+....+ ..+....+|.+..+..+++..+|..|+..+..+....... . ....
T Consensus 118 ~~lv~~L~~~~~~~r~~a~~~l~~~~~----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 118 PTNVQRLAEPSQMLKHAVVNLINYQDD----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp --------CCSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHHhcCccHHHHHHHHHHHHhhhH----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 334444456778888888887765422 2333556777777777777888888888888776543211 1 1346
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh--hhh-
Q 007863 165 RTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDC- 238 (587)
Q Consensus 165 ~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~- 238 (587)
++.+..++. +.++.+|..++.+|..+...-.. .......+|.+..+++++++.+|..|+.+|..++...+. ...
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~ 273 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVR 273 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence 666666665 45899999999999997653211 112234788899999999999999999999999876443 112
Q ss_pred hhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC---CCCcccchHHHHHHhcCCChH-HHHHHHHHhHHHHHHhhCHH
Q 007863 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRDNEA-EVRIAAAGKVTKICRILNPE 314 (587)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~ 314 (587)
....++.+..++.+.++.++..++.++..++.... ........++.+..++++.+. .++..++.++..++..-...
T Consensus 274 ~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~ 353 (780)
T 2z6g_A 274 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 353 (780)
T ss_dssp HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHH
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHH
Confidence 35689999999999999999999999987763100 001123467888888877654 45567788888887532221
Q ss_pred --HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh
Q 007863 315 --LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (587)
Q Consensus 315 --~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~ 392 (587)
.....+++.+..++.+.+..++..++.++..++...........++|.+..++.+.++.+|..++.+|..++..-...
T Consensus 354 ~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~ 433 (780)
T 2z6g_A 354 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 433 (780)
T ss_dssp HHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 223457899999999999999999999999988655433233568899999999999999999999999987642111
Q ss_pred ---hHhhhhHHHHHHHhcC-CCc-HHHHHHHHHHHHHHHhhCh------hhHHHHHHHHHHHHcCCCc-hHHHHHHHHHH
Q 007863 393 ---LLSQSLLPAIVELAED-RHW-RVRLAIIEYIPLLASQLGV------GFFDDKLGALCMQWLKDKV-YSIRDAAANNV 460 (587)
Q Consensus 393 ---~~~~~~~~~l~~~~~~-~~~-~vr~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l 460 (587)
......+|.+..++.+ .++ .+|..++..++.++...+. .......+|.+..++.+++ +.+|..|+.+|
T Consensus 434 ~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL 513 (780)
T 2z6g_A 434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI 513 (780)
T ss_dssp HHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Confidence 1123567888888765 444 8999999999988643221 1112345788888888776 49999999999
Q ss_pred HHHHHHhCh--hhhhhchHHHHHhhhcCCcc----------------------HHHHHHHHHHHHhhcccChH--HHHHh
Q 007863 461 KRLAEEFGP--DWAMQHIVPQVLEMINNPHY----------------------LYRMTILQAISLLAPVMGSE--ITCSQ 514 (587)
Q Consensus 461 ~~l~~~~~~--~~~~~~~~~~l~~~l~~~~~----------------------~~r~~a~~~l~~l~~~~~~~--~~~~~ 514 (587)
+.++..... ......++|.+.+++.+.++ .++..++.+|..++...... .....
T Consensus 514 ~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~ 593 (780)
T 2z6g_A 514 RNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLN 593 (780)
T ss_dssp HHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred HHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCC
Confidence 999842111 11235678888887765433 35667777777776421111 11356
Q ss_pred HHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863 515 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 515 ~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~ 582 (587)
.+|.+..++.++++++|..++.+|..+...-... ......++.|.+++.+++++||..|..||..+..
T Consensus 594 ~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 594 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 7899999999999999999999999987431111 2223468889999999999999999999999875
No 17
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.92 E-value=6e-21 Score=195.90 Aligned_cols=570 Identities=12% Similarity=0.077 Sum_probs=387.5
Q ss_pred HHHHHHhcC-ccHHHHHHHhhcHHHHHHHhChhhhhh---hh-cccccccc-CCchHHHHHHHHHhcccccCc-------
Q 007863 12 AVLIDELKN-DDIQLRLNSIRRLSTIARALGEERTRK---EL-IPFLSENN-DDDDEVLLAMAEELGVFIPYV------- 78 (587)
Q Consensus 12 ~~l~~~l~s-~d~~~R~~a~~~l~~~~~~~~~~~~~~---~l-~p~l~~~~-~~~~~v~~~~~~~l~~~~~~~------- 78 (587)
..+.+-+.+ .|++....|++.|..+++.- ..++.. ++ +|.+.+.+ .+++++-.++..++..+..-+
T Consensus 52 ~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (810)
T 3now_A 52 AKVASLTKVEKDQDIYVNMVHLVAALCENS-VERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKP 130 (810)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSST
T ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHhcc-HHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccccc
Confidence 344445555 78999999999999987532 123321 11 34444433 344555444444444332111
Q ss_pred -CCcc------h---HhhhhhHHHhhhcCc--hhHHHHHHHHHHHHHHhhcC---hhhHh-hhhHHHHHHhhcC-C----
Q 007863 79 -GGLE------Y---ANVLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMR---EQDVV-EHFIPLVKRLAAG-E---- 137 (587)
Q Consensus 79 -~~~~------~---~~~l~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~---~~~~~-~~ll~~~~~l~~~-~---- 137 (587)
.+.+ + ...++..|...+.+. ....|..+++.+...+.+-. +..+. ..-+.-+.+.... +
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~ 210 (810)
T 3now_A 131 DSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKY 210 (810)
T ss_dssp TCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCC
T ss_pred ccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccc
Confidence 1111 1 233333444444444 57889999988887663322 11111 1112222222211 1
Q ss_pred ------CCcchhhHHhhhhhhccCCC-----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhh-HHH
Q 007863 138 ------WFTARVSSCGLFHVAYPSAP-----EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHL-KSE 202 (587)
Q Consensus 138 ------~~~~r~~a~~l~~~~~~~~~-----~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~-~~~ 202 (587)
....|..+...+..+++... +...+.+-.++...+..++..-+..++.++..+.....+ ..+ .+.
T Consensus 211 ~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G 290 (810)
T 3now_A 211 ESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREG 290 (810)
T ss_dssp SSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTT
T ss_pred cccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccc
Confidence 23457777777777777765 234455556666666677777777788888887764332 122 345
Q ss_pred HHHHHHHhcccCchhHHHHHHHHHHHHhcccCh-hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC----Cc
Q 007863 203 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PT 277 (587)
Q Consensus 203 i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~ 277 (587)
.+|.+..+++++++.++..|+.+++..+..-.. +...+.-.|.+..++++++..+|..|+.+|.+++...+.+ ..
T Consensus 291 ~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~ 370 (810)
T 3now_A 291 ILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPF 370 (810)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSS
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccch
Confidence 778888999999999999999999997765222 2222233499999999888999999999999887543211 11
Q ss_pred ----ccchHHHHHHhcCCC--hHHHHHHHHHhHHHHHHhhCHH-HHH--HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhh
Q 007863 278 ----RSDVVPAYVRLLRDN--EAEVRIAAAGKVTKICRILNPE-LAI--QHILPCVKELSSDSSQHVRSALATVIMGMAP 348 (587)
Q Consensus 278 ----~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~-~~~--~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~ 348 (587)
...+++.+.+++.++ ++++|..|+.+|..++...... .+. ..++|.+..++++++..++..++.+++.++.
T Consensus 371 ~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~ 450 (810)
T 3now_A 371 GDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCN 450 (810)
T ss_dssp TTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred hhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcC
Confidence 124688888888777 7899999999999997642221 121 3578899999988888999999999999986
Q ss_pred hhc-----------------------------------hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh-
Q 007863 349 ILG-----------------------------------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID- 392 (587)
Q Consensus 349 ~~~-----------------------------------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~- 392 (587)
... ........+|.+..+++++++.+|..++++|..++..-...
T Consensus 451 ~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~ 530 (810)
T 3now_A 451 AYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRG 530 (810)
T ss_dssp CSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred CchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 321 01112347899999999999999999999999998542211
Q ss_pred -hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHH
Q 007863 393 -LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-----DDKLGALCMQWLKDK-VYSIRDAAANNVKRLAE 465 (587)
Q Consensus 393 -~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~-----~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~ 465 (587)
......+|.+..++.+.+...|..+..++..++....++.. ....+|.+..++..+ +...+..|+.+|..++.
T Consensus 531 ~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~ 610 (810)
T 3now_A 531 KVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLAS 610 (810)
T ss_dssp HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 12346789999999999999999999999998865444321 123577888888754 44556789999999885
Q ss_pred HhC---hhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh-HHHH--HhHHHHHHhhcCCCCccHHHHHHHHHH
Q 007863 466 EFG---PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS-EITC--SQLLPVVINASKDRVPNIKFNVAKVLQ 539 (587)
Q Consensus 466 ~~~---~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-~~~~--~~~l~~l~~~l~d~~~~vR~~a~~~l~ 539 (587)
.-. ........+|.+..++.+++..+|..|++++++++..-.. ..+. ...++.++.++..++..+|..|+.+|+
T Consensus 611 ~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALa 690 (810)
T 3now_A 611 MNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALA 690 (810)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 311 1123356789999999999999999999999999863211 1122 357899999999999999999999999
Q ss_pred HHHhhhch---HHHH-HhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863 540 SLIPIVDQ---SVVE-KSIRPCLVELSEDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 540 ~l~~~~~~---~~~~-~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~ 582 (587)
.+....+. ..+. ...+|.|..++.+.+.++|..|..++..+..
T Consensus 691 nLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 691 IITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 99873221 2333 4688999999999999999999999998865
No 18
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.92 E-value=1e-21 Score=201.59 Aligned_cols=571 Identities=15% Similarity=0.129 Sum_probs=398.1
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhC---------hh-----hhhhhhcccc---ccc-cC--CchHHHHHHHH
Q 007863 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALG---------EE-----RTRKELIPFL---SEN-ND--DDDEVLLAMAE 69 (587)
Q Consensus 10 ~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~---------~~-----~~~~~l~p~l---~~~-~~--~~~~v~~~~~~ 69 (587)
.++.++.-|.+++++.-.++...+..+...+. |+ ....++-.++ ... .+ -....|..+.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~ 172 (810)
T 3now_A 93 GVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIE 172 (810)
T ss_dssp CHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHH
Confidence 35678888889888887777766665544432 11 0111222222 221 12 24466777777
Q ss_pred HhcccccCcCC--cchH---hhhhhHHHhhhcCc----------hhHHHHHHHHHHHHHHhhcCh----hhHhhhhHHHH
Q 007863 70 ELGVFIPYVGG--LEYA---NVLLPPLETLCTVE----------ETCVRDKAVESLCRIGSQMRE----QDVVEHFIPLV 130 (587)
Q Consensus 70 ~l~~~~~~~~~--~~~~---~~l~~~l~~l~~~~----------~~~vr~~a~~~l~~l~~~~~~----~~~~~~ll~~~ 130 (587)
.+-+-.++-.. .... ..+..+|.-....+ ....|..+.-++.++.+.+.. +.+...+-.|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 252 (810)
T 3now_A 173 LITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYI 252 (810)
T ss_dssp HHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHH
T ss_pred HHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 77665554321 1110 11111221111111 358999999999999998874 44555566677
Q ss_pred HHhhcCCCCcchhhHHhhhhhhccCCCHH-----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh-hhhHHHHH
Q 007863 131 KRLAAGEWFTARVSSCGLFHVAYPSAPEA-----LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-AHLKSEIM 204 (587)
Q Consensus 131 ~~l~~~~~~~~r~~a~~l~~~~~~~~~~~-----~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-~~~~~~i~ 204 (587)
...........+..++..++.+++..++. ..+..++.+..++.++++.++..|+.+++..+..-.. ..+...-.
T Consensus 253 ~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv 332 (810)
T 3now_A 253 KDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGV 332 (810)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH
T ss_pred HHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc
Confidence 66665555555666777777777766543 1346788999999999999999999999997664222 22222334
Q ss_pred HHHHHhcccCchhHHHHHHHHHHHHhcccC-----h---hhhhhchHHHHHHhcCCC--chHHHHHHHHHHHHHHHHhCC
Q 007863 205 SIFEELTQDDQDSVRLLAVEGCGALGKLLE-----P---QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP 274 (587)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-----~---~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~~ 274 (587)
|.+..+++++++.+|..|..+|.+++.... + +.-...+++.+.+++.++ +..+|..|+++|..+......
T Consensus 333 ~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~v 412 (810)
T 3now_A 333 DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAEC 412 (810)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHH
Confidence 899999998888999999999999875322 1 112346788888888877 889999999999988642111
Q ss_pred --CCc-ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC-----------------------------------HHHH
Q 007863 275 --EPT-RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN-----------------------------------PELA 316 (587)
Q Consensus 275 --~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-----------------------------------~~~~ 316 (587)
... ...++|.++.+++..+..++..++.+|+.+..... ....
T Consensus 413 k~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vv 492 (810)
T 3now_A 413 KEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLA 492 (810)
T ss_dssp HHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHH
Confidence 111 23588999999998889999999999999987431 0011
Q ss_pred HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch--HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhH
Q 007863 317 IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 394 (587)
Q Consensus 317 ~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~ 394 (587)
....+|.+..+++++++.+|..++++++.++..-.. .......+|.+..++.+.++.+|..|+++|..++....++..
T Consensus 493 eaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 493 NEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp HTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence 235789999999999999999999999999853221 112345789999999999999999999999998865433321
Q ss_pred -----hhhhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 007863 395 -----SQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 465 (587)
Q Consensus 395 -----~~~~~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 465 (587)
....+|.+..++... +...+..++.++..++..-. ........+|.+..++.+.+..||..|+.+++.++.
T Consensus 573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 124788888888754 33445678888877765311 112223457888888889999999999999999975
Q ss_pred HhChhh---hh--hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh--HHHH--HhHHHHHHhhcCCCCccHHHHHHH
Q 007863 466 EFGPDW---AM--QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--EITC--SQLLPVVINASKDRVPNIKFNVAK 536 (587)
Q Consensus 466 ~~~~~~---~~--~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~--~~~~--~~~l~~l~~~l~d~~~~vR~~a~~ 536 (587)
+.+. +. ...++.+..++..++..+|..|++++++++..... ..+. ...+|.+..++.+++..+|..|+.
T Consensus 653 --~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~ 730 (810)
T 3now_A 653 --SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIV 730 (810)
T ss_dssp --SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred --ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHH
Confidence 2221 22 35789999999999999999999999999874221 1222 468999999999999999999999
Q ss_pred HHHHHHhhhc---hHHHHHhHHHHHHHhcCCC---CccHHHHHHHHHHHHHH
Q 007863 537 VLQSLIPIVD---QSVVEKSIRPCLVELSEDP---DVDVRFFATQALQSKDQ 582 (587)
Q Consensus 537 ~l~~l~~~~~---~~~~~~~i~~~l~~l~~d~---~~~Vr~~a~~al~~l~~ 582 (587)
++.++...-+ .......+++.|..++.++ +.+|+..|.+||..+.+
T Consensus 731 aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 731 IILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp HHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 9999976321 1234456789999987655 67899999999998864
No 19
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.92 E-value=1.7e-22 Score=213.37 Aligned_cols=533 Identities=11% Similarity=0.029 Sum_probs=349.4
Q ss_pred HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCCcc---hHhhh
Q 007863 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLE---YANVL 87 (587)
Q Consensus 11 ~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~~---~~~~l 87 (587)
+..+++.|.+++..+|..+++.+.......-.....+.|+.++. +++..+|..++.+|++++....... .....
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~---~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLN---DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHC---CCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 57899999999999999888877654322111222333444333 5677899999999998865321000 01234
Q ss_pred hhHHHhhhc-CchhHHHHHHHHHHHHHHhhcCh--hhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH---H-
Q 007863 88 LPPLETLCT-VEETCVRDKAVESLCRIGSQMRE--QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA---L- 160 (587)
Q Consensus 88 ~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~---~- 160 (587)
++.|..++. ++++.+|..|+.+|..++..-.. .-.....+|.+.++..+++..++..|+..+..+....+.. .
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~ 273 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVR 273 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence 555555554 45899999999999998764221 1123457888888888888888888888888776543221 2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhcccCch-hHHHHHHHHHHHHhcccCh-
Q 007863 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQD-SVRLLAVEGCGALGKLLEP- 235 (587)
Q Consensus 161 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~-~vr~~a~~~l~~l~~~~~~- 235 (587)
....++.+..++.++++.++..++.+|..++..... .......++.+..++.+.++ ..+..+..++..++..-..
T Consensus 274 ~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~ 353 (780)
T 2z6g_A 274 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 353 (780)
T ss_dssp HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHH
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHH
Confidence 346788999999999999999999999877642111 11222346666677776654 4556777888877753211
Q ss_pred -hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH
Q 007863 236 -QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE 314 (587)
Q Consensus 236 -~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 314 (587)
.......++.+..++.+.+..++..++.+|..++...........+++.+.+++++.++++|..|+.+|+.++..-...
T Consensus 354 ~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~ 433 (780)
T 2z6g_A 354 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 433 (780)
T ss_dssp HHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 1223457899999999999999999999999998765443344568999999999999999999999999997642111
Q ss_pred ---HHHHhHHHHHhHhcCCC-c-HHHHHHHHHHHHhhhhhhch------HHHHHhHHHHHHHhcCCCCh-HHHHHHHHHh
Q 007863 315 ---LAIQHILPCVKELSSDS-S-QHVRSALATVIMGMAPILGK------DATIEQLLPIFLSLLKDEFP-DVRLNIISKL 382 (587)
Q Consensus 315 ---~~~~~~~~~l~~~~~d~-~-~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l 382 (587)
......++.+.+++.+. + ..+|..++.+|+.++...+. .......+|.+..++.+.+. .+|..++.+|
T Consensus 434 ~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL 513 (780)
T 2z6g_A 434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI 513 (780)
T ss_dssp HHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Confidence 11134677777777552 2 48999999999999754322 11234568899999988764 9999999999
Q ss_pred HHhhhhhchh--hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHc-CCCchHHHHHHHHH
Q 007863 383 DQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-KDKVYSIRDAAANN 459 (587)
Q Consensus 383 ~~i~~~~~~~--~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~ 459 (587)
+.++..-... .....++|.+..++.+.++.+|..+...++. . + +. .....+++..++.+
T Consensus 514 ~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~n-------q-------~----~~~~~~~~~v~~~a~~a 575 (780)
T 2z6g_A 514 RNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ-------Q-------Q----FVEGVRMEEIVEACTGA 575 (780)
T ss_dssp HHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC--------------------C----CSTTCCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhcccc-------c-------h----hhcccChHHHHHHHHHH
Confidence 9998532111 1123567888888877777777655443221 0 0 00 11335688888888
Q ss_pred HHHHHHHhChh--hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHH-H-HHhHHHHHHhhcCCCCccHHHHHH
Q 007863 460 VKRLAEEFGPD--WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI-T-CSQLLPVVINASKDRVPNIKFNVA 535 (587)
Q Consensus 460 l~~l~~~~~~~--~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~-~-~~~~l~~l~~~l~d~~~~vR~~a~ 535 (587)
|+.++..-... ......+|.+.+++.+++..+|..++.++..++..-.... + ....++.+..++.++++.||..|+
T Consensus 576 L~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~ 655 (780)
T 2z6g_A 576 LHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 655 (780)
T ss_dssp HHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 88876321111 1236689999999999999999999999999874311111 1 234678899999999999999999
Q ss_pred HHHHHHHhhhchHHHHHhHHHHHHHhcCC
Q 007863 536 KVLQSLIPIVDQSVVEKSIRPCLVELSED 564 (587)
Q Consensus 536 ~~l~~l~~~~~~~~~~~~i~~~l~~l~~d 564 (587)
.+|..+...-+.......-.+.+..+..+
T Consensus 656 ~aL~~l~~~~~~~~~~~l~~~ll~~l~~~ 684 (780)
T 2z6g_A 656 AVLFRMSEDKPQDYKKRLSVELTSSLFRT 684 (780)
T ss_dssp HHHHHHHTTSCTTHHHHHHHHHHHHC---
T ss_pred HHHHHHHcCChHhhhccccHHHHHHHHhC
Confidence 99999987644222111133444554433
No 20
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.92 E-value=8.3e-23 Score=209.58 Aligned_cols=468 Identities=14% Similarity=0.122 Sum_probs=331.3
Q ss_pred HHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHH
Q 007863 90 PLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYR 169 (587)
Q Consensus 90 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~ 169 (587)
-+.+.+.+++...|..++.-+..+. ..|.+ . ..+.+.+.++..++++..|..++..+..+.+.. ++....+.+.+.
T Consensus 17 ~i~~~L~~~~~~~k~~~~~kli~~~-~~G~d-~-~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~~~l~~n~l~ 92 (591)
T 2vgl_B 17 ELKAELNNEKKEKRKEAVKKVIAAM-TVGKD-V-SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDMAIMAVNSFV 92 (591)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHH-HTTCC-C-GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHHHHTTHHHHG
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHH-HCCCC-h-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chHHHHHHHHHH
Confidence 3455556666666666555444322 23332 1 234555666777777777777665555543322 334444567777
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHh
Q 007863 170 QLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF 249 (587)
Q Consensus 170 ~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 249 (587)
+.++|+++.+|..|+.+++.+. .+...+.+.|.+.+++.|+++.||+.|+.++..+....++......+++.+.++
T Consensus 93 kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~l 168 (591)
T 2vgl_B 93 KDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDL 168 (591)
T ss_dssp GGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHH
Confidence 8889999999999998888774 356778889999999999999999999999999998654422223688999999
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhCCCCcc---cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhH
Q 007863 250 SQDKSWRVRYMVANQLYELCEAVGPEPTR---SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKE 326 (587)
Q Consensus 250 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ 326 (587)
+.|+++.||..|+.+|+.++..-+..... ...++.+...+.+.++..+...++.++.++.. .+.....+++.+..
T Consensus 169 L~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~l~~l~~ 246 (591)
T 2vgl_B 169 IADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSICERVTP 246 (591)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHHHHHHTT
T ss_pred hCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHHHHHHHH
Confidence 99999999999999999987653322011 12345555556666777777777766555421 12234678899999
Q ss_pred hcCCCcHHHHHHHHHHHHhhhhhh--ch---HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHH
Q 007863 327 LSSDSSQHVRSALATVIMGMAPIL--GK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401 (587)
Q Consensus 327 ~~~d~~~~vr~~a~~~l~~l~~~~--~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~ 401 (587)
++++.++.|+..+++++..+.... ++ ......+.+.+..++ ++++++|..++.++..+....+ +.+.+. +..
T Consensus 247 ~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p-~~~~~~-~~~ 323 (591)
T 2vgl_B 247 RLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRP-EILKQE-IKV 323 (591)
T ss_dssp CSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCC-STTTTC-TTT
T ss_pred HHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhCh-HHHHHH-HHh
Confidence 999999999999999999987543 11 122345666666655 4789999999999999986532 211111 111
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHH
Q 007863 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVL 481 (587)
Q Consensus 402 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 481 (587)
+.... ++++.+|..+++.+..++..-+ .+.+++.+..++.+.++++|..++.+++.++..+... .+.+++.+.
T Consensus 324 ~~~~~-~d~~~Ir~~al~~L~~l~~~~n----v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~--~~~~v~~Ll 396 (591)
T 2vgl_B 324 FFVKY-NDPIYVKLEKLDIMIRLASQAN----IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS--AERCVSTLL 396 (591)
T ss_dssp TSCCT-TSCHHHHHHHHHHHHHTCCSST----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHH
T ss_pred heecc-CChHHHHHHHHHHHHHHCChhh----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH--HHHHHHHHH
Confidence 21122 3449999999988877654322 3457778888999999999999999999999876543 467889999
Q ss_pred hhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcC-CCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHH
Q 007863 482 EMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE 560 (587)
Q Consensus 482 ~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~ 560 (587)
+++.+....++..++.++..+....+.. .+.+++.+...+. +..+.+|..+++++|+.+...... ..+++.+.+
T Consensus 397 ~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~---~~~l~~l~~ 471 (591)
T 2vgl_B 397 DLIQTKVNYVVQEAIVVIRDIFRKYPNK--YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNA---DELLESFLE 471 (591)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTH---HHHHHHHST
T ss_pred HHHcccchHHHHHHHHHHHHHHHHCcch--HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCH---HHHHHHHHH
Confidence 9999988888888898998887654432 3456777777776 467899999999999998776432 355666666
Q ss_pred hcCCCCccHHHHHHHHHHHHHH
Q 007863 561 LSEDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 561 l~~d~~~~Vr~~a~~al~~l~~ 582 (587)
...+.++.||..+..|+.++..
T Consensus 472 ~~~~~~~~vr~~~l~a~~Kl~~ 493 (591)
T 2vgl_B 472 GFHDESTQVQLTLLTAIVKLFL 493 (591)
T ss_dssp TCSSSCHHHHHHHHHHHHHHHT
T ss_pred hhccCCHHHHHHHHHHHHHHHh
Confidence 5667788999999999988764
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=3.2e-22 Score=203.83 Aligned_cols=378 Identities=10% Similarity=0.059 Sum_probs=281.9
Q ss_pred HHHHHHhcccCchhHHHHHHHHHHHHhcccCh----hhhhhchHHHHHHhcCCC-chHHHHHHHHHHHHHHHHhC---CC
Q 007863 204 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVG---PE 275 (587)
Q Consensus 204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~---~~ 275 (587)
++.+...++++++.+|..|+..|..+...... ......++|.+..++.++ ++.+|..|+.+|+.++.... ..
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 44555566666777777777777777554211 122346788888888886 88999999999888865210 01
Q ss_pred CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhh-c
Q 007863 276 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL-G 351 (587)
Q Consensus 276 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~ 351 (587)
......+|.+..+++++++.+|..|+.+|+.++..... ......+++.+..++.+.++.+|..++.+++.++..- +
T Consensus 169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 248 (530)
T 1wa5_B 169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP 248 (530)
T ss_dssp HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCC
Confidence 11235788888888888899999999999998863211 1223457888889898889999999999999988543 1
Q ss_pred --hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch--h-hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 007863 352 --KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426 (587)
Q Consensus 352 --~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--~-~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~ 426 (587)
.......++|.+..++.+.++.+|..++.+|..++..... . .....++|.+..++.++++.+|..++..++.++.
T Consensus 249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence 2334567889999999999999999999999998854221 1 1223678999999999999999999999988874
Q ss_pred hhC---hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCh---hhhhhchHHHHHhhhcCCccHHHHHHHHHHH
Q 007863 427 QLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAIS 500 (587)
Q Consensus 427 ~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~ 500 (587)
..+ ...+...++|.+..++.++++.+|..|+.+|+.++..... ..+...++|.+..++.++++.+|..++++++
T Consensus 329 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~ 408 (530)
T 1wa5_B 329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS 408 (530)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 321 1112235788999999999999999999999998752111 1123578999999999899999999999999
Q ss_pred HhhcccCh--HH----HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH---------HH-----HHhHHHHHHH
Q 007863 501 LLAPVMGS--EI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---------VV-----EKSIRPCLVE 560 (587)
Q Consensus 501 ~l~~~~~~--~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---------~~-----~~~i~~~l~~ 560 (587)
+++...+. +. ....++|.+..++.++++.+|..++.+|..++...+.. .+ ....++.|..
T Consensus 409 ~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~ 488 (530)
T 1wa5_B 409 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN 488 (530)
T ss_dssp HHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHG
T ss_pred HHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHH
Confidence 99876443 21 23458899999999999999999999999998764321 11 1235788889
Q ss_pred hcCCCCccHHHHHHHHHHHHH
Q 007863 561 LSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 561 l~~d~~~~Vr~~a~~al~~l~ 581 (587)
+..+++++|+..|..++..+-
T Consensus 489 L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 489 CQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp GGGCSCHHHHHHHHHHHHHHS
T ss_pred HHcCCCHHHHHHHHHHHHHHC
Confidence 999999999999999987754
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=3.5e-22 Score=199.91 Aligned_cols=378 Identities=13% Similarity=0.078 Sum_probs=276.6
Q ss_pred HHHHHHhcccCchhHHHHHHHHHHHHhccc--Ch--hhhhh-chHHHHHHhcCCC-chHHHHHHHHHHHHHHHHhC---C
Q 007863 204 MSIFEELTQDDQDSVRLLAVEGCGALGKLL--EP--QDCVA-HILPVIVNFSQDK-SWRVRYMVANQLYELCEAVG---P 274 (587)
Q Consensus 204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~--~~--~~~~~-~l~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~---~ 274 (587)
++.+.+.++++++.+|..|+..+..+.... ++ ..... .++|.+.+++.+. ++.+|..++.+|..++.... .
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 445555556666667777777776654311 11 11223 6788888888877 88899999998888874210 0
Q ss_pred CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--H-HHHHhHHHHHhHhcCC-CcHHHHHHHHHHHHhhhhhh
Q 007863 275 EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--E-LAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPIL 350 (587)
Q Consensus 275 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~~~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~ 350 (587)
.......+|.+.++++++++.+|..|+.+|+.++..... . .....+++.+.+++.+ .++.+|..++.+++.++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 011245889999999999999999999999998864211 1 1224578888888874 78999999999999988543
Q ss_pred -c--hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch---hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 007863 351 -G--KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL 424 (587)
Q Consensus 351 -~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l 424 (587)
+ .......++|.+..++.+.++.+|..+++++..++..... ......++|.+..++.++++.+|..++..++.+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 1 1223367889999999999999999999999998864321 112245789999999999999999999999888
Q ss_pred HHhhChh---hHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCh---hhhhhchHHHHHhhhcCCccHHHHHHHHH
Q 007863 425 ASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQA 498 (587)
Q Consensus 425 ~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~~a~~~ 498 (587)
+...+.. .....++|.+..++.++++.+|..|+.+|+.++..... ......++|.+.+++.+++..+|..++++
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~ 341 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA 341 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 7532211 11224788899999999999999999999998752111 11235789999999999999999999999
Q ss_pred HHHhhcccChHH----HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH---------HHHHhH-----HHHHHH
Q 007863 499 ISLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---------VVEKSI-----RPCLVE 560 (587)
Q Consensus 499 l~~l~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---------~~~~~i-----~~~l~~ 560 (587)
+++++....++. ....++|.+..++.++++.+|..++.+|..+....+.. .+...+ ++.|..
T Consensus 342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 421 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF 421 (450)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence 999987543332 23468999999999999999999999999998754321 222333 677888
Q ss_pred hcCCCCccHHHHHHHHHHHHH
Q 007863 561 LSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 561 l~~d~~~~Vr~~a~~al~~l~ 581 (587)
+..+++.+|+..|..++..+-
T Consensus 422 l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 422 LQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHC
Confidence 889999999999999988764
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.91 E-value=4.7e-22 Score=198.99 Aligned_cols=379 Identities=11% Similarity=0.068 Sum_probs=287.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---h-hhHH-HHHHHHHHhcccC-chhHHHHHHHHHHHHhcccCh---
Q 007863 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---A-HLKS-EIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEP--- 235 (587)
Q Consensus 165 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~-~~~~-~i~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~--- 235 (587)
++.+...++++++.+|..++..|..+...... . .... .++|.+.++++++ ++.+|..|+.++..++...++
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 56666677888999999999999998652111 1 1222 5788888888888 789999999999998874322
Q ss_pred hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhh
Q 007863 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRIL 311 (587)
Q Consensus 236 ~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~ 311 (587)
......++|.+.++++++++.+|..|+.+|+.++..... ......+++.+..++++ .++.+|..++.+|+.++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 122356899999999999999999999999999853110 01123578999999985 78999999999999998643
Q ss_pred CH---HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch---HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHh
Q 007863 312 NP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 385 (587)
Q Consensus 312 ~~---~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i 385 (587)
++ ......++|.+.+++.+.++.+|..++.++..++..... ......++|.+..++.++++.+|..++.+++.+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 11 122367889999999999999999999999999864321 112345789999999999999999999999999
Q ss_pred hhhhchh---hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 007863 386 NQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANN 459 (587)
Q Consensus 386 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 459 (587)
+...+.. .....++|.+..++.++++.+|..++..++.++..... ......++|.+...+.++++.||..|+.+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~ 341 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA 341 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 8643221 12236889999999999999999999999988752111 11224678889999999999999999999
Q ss_pred HHHHHHHhChhh----hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH---------HHHHhH-----HHHHHh
Q 007863 460 VKRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---------ITCSQL-----LPVVIN 521 (587)
Q Consensus 460 l~~l~~~~~~~~----~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---------~~~~~~-----l~~l~~ 521 (587)
|+.++.....+. ....++|.+.+++.++++.+|..++.++..+....+.. .+...+ ++.+..
T Consensus 342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 421 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF 421 (450)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence 999987544332 23568999999999999999999999999998643221 122223 456667
Q ss_pred hcCCCCccHHHHHHHHHHHHHh
Q 007863 522 ASKDRVPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 522 ~l~d~~~~vR~~a~~~l~~l~~ 543 (587)
+..++++.+|..+..++..+..
T Consensus 422 l~~~~~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 422 LQSHENQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHHHCC
Confidence 7777788888888888877753
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.90 E-value=2.2e-21 Score=197.66 Aligned_cols=380 Identities=11% Similarity=0.086 Sum_probs=280.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhcccC-chhHHHHHHHHHHHHhcccCh---h
Q 007863 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEP---Q 236 (587)
Q Consensus 165 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~---~ 236 (587)
++.+...+.++++.+|..++..|..+......+ .....++|.+..++.++ ++.+|..|+.+|..++...+. .
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 455556667778888888888888875432111 12234678888888886 788999999999888764322 1
Q ss_pred hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC---CCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH
Q 007863 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP 313 (587)
Q Consensus 237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 313 (587)
......+|.+..++.++++.+|..|+.+|+.++.... ........++.+..++.+.++.+|..++.+|..++..-++
T Consensus 169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 248 (530)
T 1wa5_B 169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP 248 (530)
T ss_dssp HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCC
Confidence 1235678888888888899999999999998874210 0111235788888999888899999999999999864311
Q ss_pred ---HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch---HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhh
Q 007863 314 ---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (587)
Q Consensus 314 ---~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~ 387 (587)
......++|.+..++.+.++.+|..++.+++.++...+. ......++|.+..++.+.++.+|..++.+|+.++.
T Consensus 249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence 233467888899999999999999999999988754321 11223678889999999999999999999999875
Q ss_pred hhch---hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 007863 388 VIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVK 461 (587)
Q Consensus 388 ~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 461 (587)
.-+. ..+...++|.+..++.++++.+|..++..++.++..... ..+...++|.+..++.++++.+|..|+.+|+
T Consensus 329 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~ 408 (530)
T 1wa5_B 329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS 408 (530)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3221 112246888999999999999999999999888752111 1122346788888888899999999999999
Q ss_pred HHHHHhCh--hh----hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh---------HHH-----HHhHHHHHHh
Q 007863 462 RLAEEFGP--DW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---------EIT-----CSQLLPVVIN 521 (587)
Q Consensus 462 ~l~~~~~~--~~----~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---------~~~-----~~~~l~~l~~ 521 (587)
.++...+. +. ....++|.+..++.+++..+|..++.++..+...... ..+ ....++.+..
T Consensus 409 ~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~ 488 (530)
T 1wa5_B 409 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN 488 (530)
T ss_dssp HHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHG
T ss_pred HHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHH
Confidence 99886443 22 3356899999999999999999999999999864322 111 1235778888
Q ss_pred hcCCCCccHHHHHHHHHHHHHhh
Q 007863 522 ASKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 522 ~l~d~~~~vR~~a~~~l~~l~~~ 544 (587)
+..++++.++..|..+|..++..
T Consensus 489 L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 489 CQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp GGGCSCHHHHHHHHHHHHHHSSS
T ss_pred HHcCCCHHHHHHHHHHHHHHCCc
Confidence 89999999999999999888764
No 25
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.89 E-value=7.8e-20 Score=188.03 Aligned_cols=530 Identities=11% Similarity=0.024 Sum_probs=361.4
Q ss_pred ccHHHHHHHhcCcc--HHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCCcchHhh
Q 007863 9 YPIAVLIDELKNDD--IQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANV 86 (587)
Q Consensus 9 ~~~~~l~~~l~s~d--~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~ 86 (587)
..+..++..+.+.. .+.|....+.+..+...+... +...-+..+.+.+.-+. .| .+ .+.
T Consensus 10 ~~l~~~i~~ir~~~~~~~e~~~i~~e~~~ir~~l~~~---------------~~~~k~~~l~kli~~~~--~G-~d-~~~ 70 (618)
T 1w63_A 10 IRLRELIRTIRTARTQAEEREMIQKECAAIRSSFREE---------------DNTYRCRNVAKLLYMHM--LG-YP-AHF 70 (618)
T ss_dssp CCHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHTTT---------------CTTTHHHHHHHHHHHHH--TT-CC-CGG
T ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhCC---------------CHHHHHHHHHHHHHHHH--cC-CC-Ccc
Confidence 45888888888653 345544444454444333211 11122223333333221 13 22 233
Q ss_pred hhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHH
Q 007863 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRT 166 (587)
Q Consensus 87 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~ 166 (587)
...-+.+++.+++...|+...-.+..+++.- + +........+.+-..+.++.+|..|+..++.+. +++..+.+.+
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~-~-e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~ 145 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDER-Q-DVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDLAG 145 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC-H-HHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHHHHH
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCC-c-HHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 4444556667889888888877777776542 2 222234455555567788999999999888875 3667788899
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh-hhhhhchHHH
Q 007863 167 IYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QDCVAHILPV 245 (587)
Q Consensus 167 ~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~ 245 (587)
.+..++.|+++.||+.|+.+++.+....+ ...+.+++.+..++.|.++.|+..|+.++..++..-+. ......++|.
T Consensus 146 ~l~~~L~~~~~~VRk~A~~al~~l~~~~p--~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~ 223 (618)
T 1w63_A 146 EVEKLLKTSNSYLRKKAALCAVHVIRKVP--ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQ 223 (618)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHHCG--GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHCh--HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 99999999999999999999999998654 34456778888899999999999999999998765322 1122344554
Q ss_pred HHHhcC---------------CCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhc------CCChHHHHHHHHHhH
Q 007863 246 IVNFSQ---------------DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL------RDNEAEVRIAAAGKV 304 (587)
Q Consensus 246 l~~~~~---------------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~l 304 (587)
+...+. ..++..+...+++|+.++..- ......+.+.+..++ ++.+..|...|++++
T Consensus 224 l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~--~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i 301 (618)
T 1w63_A 224 LVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND--DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTI 301 (618)
T ss_dssp HHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC--HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 444332 247788888888888776421 011224555555543 334678888888888
Q ss_pred HHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHH
Q 007863 305 TKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384 (587)
Q Consensus 305 ~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 384 (587)
..+.. .........+.+..++.+++..+|..++.+++.++...+ .......+.+..++.|++..||..++..+..
T Consensus 302 ~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p--~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~ 376 (618)
T 1w63_A 302 MDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH--NAVQRHRSTIVDCLKDLDVSIKRRAMELSFA 376 (618)
T ss_dssp HHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH--HHHGGGHHHHHHGGGSSCHHHHHHHHHHHHH
T ss_pred HhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH--HHHHHHHHHHHHHccCCChhHHHHHHHHHHH
Confidence 77532 122224566777888888899999999999999986532 2334456678888999999999999999999
Q ss_pred hhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 007863 385 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA 464 (587)
Q Consensus 385 i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 464 (587)
++..-.. +.+++.+...+.+.+..+|..++..++.++..+.+. ....++.+++++++....++..++..+..+.
T Consensus 377 l~~~~nv----~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~--~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii 450 (618)
T 1w63_A 377 LVNGNNI----RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS--KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLI 450 (618)
T ss_dssp HCCSSST----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHH
T ss_pred HcccccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 8764222 456777777778889999999999999999876543 3556788888888877778888888888888
Q ss_pred HHhChhhhhhchHHHHHhhhcC--CccHHHHHHHHHHHHhhcccChH---------HHHHhHHHHHHhhcC--CCCccHH
Q 007863 465 EEFGPDWAMQHIVPQVLEMINN--PHYLYRMTILQAISLLAPVMGSE---------ITCSQLLPVVINASK--DRVPNIK 531 (587)
Q Consensus 465 ~~~~~~~~~~~~~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~~~~---------~~~~~~l~~l~~~l~--d~~~~vR 531 (587)
..... ....+++.+.+.+.+ ........+++++|..+..+... .....+.+.+..+++ ..++.+|
T Consensus 451 ~~~p~--l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr 528 (618)
T 1w63_A 451 TNSVE--MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTR 528 (618)
T ss_dssp HHSCS--THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHH
T ss_pred hcChh--HHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 75442 234566666666553 23444557899999998744210 011233444444443 5689999
Q ss_pred HHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863 532 FNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 532 ~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~ 581 (587)
..++.++..++...+. ..+.+...|..+..|.|.+||.+|...+.-+.
T Consensus 529 ~~~lta~~Kl~~~~~~--~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 529 GYALTAIMKLSTRFTC--TVNRIKKVVSIYGSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp HHHHHHHHHHHTTCSS--CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcc--hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 9999999999877643 24556667777889999999999999887764
No 26
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.89 E-value=1.6e-20 Score=191.35 Aligned_cols=377 Identities=12% Similarity=0.090 Sum_probs=277.7
Q ss_pred HHHHHHhcccCchhHHHHHHHHHHHHhcccC-h---hhhhhchHHHHHHhcCCCc-hHHHHHHHHHHHHHHHHhCC---C
Q 007863 204 MSIFEELTQDDQDSVRLLAVEGCGALGKLLE-P---QDCVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVGP---E 275 (587)
Q Consensus 204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-~---~~~~~~l~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~ 275 (587)
+|.+.+.+.++++.+|..|+..+..+..... + ......++|.+..++.+++ +.+|..|+.+|+.++..... .
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4555556666677777777777777755433 1 2234567888888888776 88888888888888752100 0
Q ss_pred CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---HHHHHhHHHHHhHhc-CCCcHHHHHHHHHHHHhhhhhhc
Q 007863 276 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELS-SDSSQHVRSALATVIMGMAPILG 351 (587)
Q Consensus 276 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~ 351 (587)
......+|.+..+++++++.+|..|+.+|+.++..... ......+++.+..++ .+.++.++..++.++..++...+
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 11225788889999988899999999999998763211 112234677888888 67789999999999998876532
Q ss_pred --hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh---hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 007863 352 --KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426 (587)
Q Consensus 352 --~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~ 426 (587)
.......++|.+..++.+.++.++..++.+|..++...... .....++|.+..++.++++.+|..++..++.++.
T Consensus 236 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 315 (528)
T 4b8j_A 236 QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT 315 (528)
T ss_dssp CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence 22344678899999999999999999999999988543221 1223578899999999999999999999988875
Q ss_pred hhCh---hhHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhChh----hhhhchHHHHHhhhcCCccHHHHHHHHH
Q 007863 427 QLGV---GFFDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVLEMINNPHYLYRMTILQA 498 (587)
Q Consensus 427 ~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~~~~~~~r~~a~~~ 498 (587)
.... ..+...++|.+..++.++ ++.+|..|+.+|+.++.. ..+ .+...++|.+..++.+++..+|..++.+
T Consensus 316 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~a 394 (528)
T 4b8j_A 316 GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWA 394 (528)
T ss_dssp SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 3211 111234688888999888 999999999999999852 221 1235788999999988899999999999
Q ss_pred HHHhhcccChHH----HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--------------HHHHhHHHHHHH
Q 007863 499 ISLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------------VVEKSIRPCLVE 560 (587)
Q Consensus 499 l~~l~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--------------~~~~~i~~~l~~ 560 (587)
+++++.....+. ....+++.+..++.++++.++..++.+|..++...+.. ......++.+..
T Consensus 395 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 474 (528)
T 4b8j_A 395 ISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIEN 474 (528)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHH
Confidence 999987644332 12467899999999999999999999999998754321 111234677888
Q ss_pred hcCCCCccHHHHHHHHHHHHH
Q 007863 561 LSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 561 l~~d~~~~Vr~~a~~al~~l~ 581 (587)
+..+++++|+..|...+..+.
T Consensus 475 L~~~~~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 475 LQSHDNNEIYEKAVKILEAYW 495 (528)
T ss_dssp GGGCSSHHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHHHC
Confidence 899999999999999988764
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.88 E-value=8.6e-20 Score=190.05 Aligned_cols=450 Identities=11% Similarity=0.005 Sum_probs=289.3
Q ss_pred hhHHHHHHHHHHHHHHhhcChh--hHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH----HHHHHHHHHHHhc
Q 007863 99 ETCVRDKAVESLCRIGSQMREQ--DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA----LKTELRTIYRQLC 172 (587)
Q Consensus 99 ~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~----~~~~l~~~l~~l~ 172 (587)
++.+|..|+.+|..++..-... -.....+|.+.++..+++..++..++..+..+....++. .....++.+..++
T Consensus 70 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL 149 (644)
T 2z6h_A 70 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL 149 (644)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGG
T ss_pred CHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHH
Confidence 4555555555555544321110 012234455555555555555555555554443322111 1245678888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhcccCc-hhHHHHHHHHHHHHhcccCh--hhhhhchHHHH
Q 007863 173 QDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQ-DSVRLLAVEGCGALGKLLEP--QDCVAHILPVI 246 (587)
Q Consensus 173 ~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l 246 (587)
.++++.++..++.+|..++...+. .......++.+..++.+.+ ..++..++.+|..++..-.. .......++.+
T Consensus 150 ~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L 229 (644)
T 2z6h_A 150 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL 229 (644)
T ss_dssp GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHH
Confidence 888899999998899888742111 1112234666666776653 56778888888888753221 12234578899
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--H-HHHHhHHHH
Q 007863 247 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--E-LAIQHILPC 323 (587)
Q Consensus 247 ~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~~~~~ 323 (587)
..++.+.+..+|..++.+|..++...........++|.+..++++.++++|..++.+|..++..-.. . ......++.
T Consensus 230 ~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~ 309 (644)
T 2z6h_A 230 GLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 309 (644)
T ss_dssp HTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHH
Confidence 9999999999999999999999876444333456899999999999999999999999999764211 1 122346777
Q ss_pred HhHhcCCC--cHHHHHHHHHHHHhhhhhhchH------HHHHhHHHHHHHhcCCCC-hHHHHHHHHHhHHhhhhhchh--
Q 007863 324 VKELSSDS--SQHVRSALATVIMGMAPILGKD------ATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGID-- 392 (587)
Q Consensus 324 l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~i~~~~~~~-- 392 (587)
+..++.+. .+.+|..++.+++.++...+.. ......+|.+..++.+.+ +.++..++.++..++..-...
T Consensus 310 Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~ 389 (644)
T 2z6h_A 310 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAP 389 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHH
T ss_pred HHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHH
Confidence 87777653 3799999999999997543311 122457899999999875 799999999999987532211
Q ss_pred hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh-
Q 007863 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW- 471 (587)
Q Consensus 393 ~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~- 471 (587)
.....++|.+..++.+.++.+|..+...++.-. + .-.....+++..++.+|..++..-....
T Consensus 390 i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~--~---------------~~~~~~~~v~~~a~~aL~~La~~~~~~~~ 452 (644)
T 2z6h_A 390 LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ--F---------------VEGVRMEEIVEGCTGALHILARDVHNRIV 452 (644)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHTTC---------------------------CCSSCHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHcCCHHHHHHHHhccchhhhhHhhhccccch--h---------------cccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 123467888888888877888776655433200 0 0012345677888888887764321111
Q ss_pred -hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHH--HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH
Q 007863 472 -AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 472 -~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 548 (587)
.....+|.+.+++.+++..+|..++.++.+++..-.... .....++.+..++.++++.+|..|+.+|..+...-+..
T Consensus 453 l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~ 532 (644)
T 2z6h_A 453 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 532 (644)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHH
T ss_pred HHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHh
Confidence 235678888899988888899999999888875311111 12345678888899999999999999999987764322
Q ss_pred HHHHhHHHHHHHhcCCC
Q 007863 549 VVEKSIRPCLVELSEDP 565 (587)
Q Consensus 549 ~~~~~i~~~l~~l~~d~ 565 (587)
.......+.+..+..+.
T Consensus 533 ~~~~~~~~il~~~~~~~ 549 (644)
T 2z6h_A 533 YKKRLSVELTSSLFRTE 549 (644)
T ss_dssp HHHHHHHHHHHHHSCCS
T ss_pred hhcccchHHHHHHHhCC
Confidence 22111356666655443
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.88 E-value=3.7e-20 Score=188.69 Aligned_cols=379 Identities=11% Similarity=0.089 Sum_probs=288.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHhcccCc-hhHHHHHHHHHHHHhcccCh---h
Q 007863 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEA----AHLKSEIMSIFEELTQDDQ-DSVRLLAVEGCGALGKLLEP---Q 236 (587)
Q Consensus 165 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~~---~ 236 (587)
+|.+...+.++++.+|..++..|..+...... ......++|.+.+++.+++ +.+|..|+.+|..++..-+. .
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 56666667788899999999999988764321 1223346788888888876 89999999999999874332 1
Q ss_pred hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhc-CCChHHHHHHHHHhHHHHHHhhC
Q 007863 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILN 312 (587)
Q Consensus 237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~ 312 (587)
......+|.+..++.++++.+|..|+.+|+.++..... .......++.+..++ ++.++.++..++.+|..++...+
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 12345889999999999999999999999999753110 111234788888888 67789999999999999987532
Q ss_pred --HHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH---HHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhh
Q 007863 313 --PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (587)
Q Consensus 313 --~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~ 387 (587)
.......++|.+..++.+.++.++..++.+++.++...... .....++|.+..++.+.++.++..++.+|+.++.
T Consensus 236 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 315 (528)
T 4b8j_A 236 QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT 315 (528)
T ss_dssp CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence 12344678899999999999999999999999998543321 1234578999999999999999999999999986
Q ss_pred hhchh---hHhhhhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHcCCCchHHHHHHHHH
Q 007863 388 VIGID---LLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWLKDKVYSIRDAAANN 459 (587)
Q Consensus 388 ~~~~~---~~~~~~~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~ 459 (587)
..... .+...++|.+..++.++ ++.+|..++..++.++.. ..+. +...++|.+..++.+.++.+|..|+.+
T Consensus 316 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~a 394 (528)
T 4b8j_A 316 GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWA 394 (528)
T ss_dssp SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 32211 12245789999999988 999999999999998852 2211 223567888899999999999999999
Q ss_pred HHHHHHHhChhh----hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh---------HHH-----HHhHHHHHHh
Q 007863 460 VKRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---------EIT-----CSQLLPVVIN 521 (587)
Q Consensus 460 l~~l~~~~~~~~----~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---------~~~-----~~~~l~~l~~ 521 (587)
|+.++.....+. ....+++.+..++.+++..++..++.++..+...... ..+ ....+..+..
T Consensus 395 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 474 (528)
T 4b8j_A 395 ISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIEN 474 (528)
T ss_dssp HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHH
Confidence 999987633332 2357899999999999999999999999999864322 111 2234667788
Q ss_pred hcCCCCccHHHHHHHHHHHHHhh
Q 007863 522 ASKDRVPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 522 ~l~d~~~~vR~~a~~~l~~l~~~ 544 (587)
+..++++.++..|..++..++..
T Consensus 475 L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 475 LQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp GGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHcCCCHHHHHHHHHHHHHHCCC
Confidence 88899999999999999988754
No 29
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.87 E-value=1.2e-19 Score=185.58 Aligned_cols=421 Identities=12% Similarity=0.044 Sum_probs=296.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh-hh--HHHHHHHHHHhccc-CchhHHHHHHHHHHHHhcccCh
Q 007863 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA-HL--KSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP 235 (587)
Q Consensus 160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~-~~--~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~ 235 (587)
.....+|.+..++.++++.+|..++..|+.++..-... .. ....++.+.+++.+ +++.+|..++.+|..++..-..
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~ 93 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 93 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchh
Confidence 33456788888889999999999999999998643221 11 12456666666654 4788999999999998654211
Q ss_pred --hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC---CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHh
Q 007863 236 --QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 310 (587)
Q Consensus 236 --~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 310 (587)
.......+|.+..+++++++.+|..++.+|..++...+.. ......+|.+..++++++++++..++.+|..++..
T Consensus 94 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~ 173 (529)
T 1jdh_A 94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 173 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 1223457899999999999999999999999998753221 11245789999999999999999999999888652
Q ss_pred hCHH----HHHHhHHHHHhHhcCCC-cHHHHHHHHHHHHhhhhhhch--HHHHHhHHHHHHHhcCCCChHHHHHHHHHhH
Q 007863 311 LNPE----LAIQHILPCVKELSSDS-SQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLD 383 (587)
Q Consensus 311 ~~~~----~~~~~~~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 383 (587)
.++ ......++.+..++.+. ....+..++.++..++..-.. .......+|.+..++.+.++.++..+++++.
T Consensus 174 -~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~ 252 (529)
T 1jdh_A 174 -NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252 (529)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHH
Confidence 111 12234566666666544 456677778888877753221 1223457889999999999999999999999
Q ss_pred HhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC--hh-hHHHHHHHHHHHHcCC--CchHHHHHHHH
Q 007863 384 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VG-FFDDKLGALCMQWLKD--KVYSIRDAAAN 458 (587)
Q Consensus 384 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~--~~-~~~~~l~~~l~~~l~d--~~~~vr~~a~~ 458 (587)
.++...........++|.+..++.++++.+|..++..++.++..-. .. ......++.+..++.+ .++.+|..|+.
T Consensus 253 ~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~ 332 (529)
T 1jdh_A 253 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 332 (529)
T ss_dssp HHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHH
Confidence 9987654333345789999999999999999999999998865311 11 1122356777777754 34799999999
Q ss_pred HHHHHHHHhCh------hhhhhchHHHHHhhhcCCc-cHHHHHHHHHHHHhhcccCh--HHHHHhHHHHHHhhcCCCCcc
Q 007863 459 NVKRLAEEFGP------DWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGS--EITCSQLLPVVINASKDRVPN 529 (587)
Q Consensus 459 ~l~~l~~~~~~------~~~~~~~~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~l~d~~~~ 529 (587)
+|+.++...+. .......+|.+.+++.+++ +.+|..+++++++++..-.. ......++|.+..++.+.++.
T Consensus 333 ~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 412 (529)
T 1jdh_A 333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 412 (529)
T ss_dssp HHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHH
Confidence 99999753222 1123467899999998876 58999999999999863221 122456889999988887777
Q ss_pred HHHHHHHHHH----------------------HHHhhhch--HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863 530 IKFNVAKVLQ----------------------SLIPIVDQ--SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 530 vR~~a~~~l~----------------------~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~ 581 (587)
+|..++++++ .++..... .......+|.|..++.|++++|+..|.+++..+.
T Consensus 413 v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~ 488 (529)
T 1jdh_A 413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 488 (529)
T ss_dssp HC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHh
Confidence 7776555444 34332111 1233456789999999999999999999998875
No 30
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.85 E-value=7.4e-19 Score=180.79 Aligned_cols=508 Identities=10% Similarity=0.048 Sum_probs=340.2
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCCcchHhhhhh
Q 007863 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLP 89 (587)
Q Consensus 10 ~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~ 89 (587)
.+..+-+.+.++|...|..++..+-.+ ...|.+..+ .....++...+++.+.++..--.+..+++. ..+......+
T Consensus 35 e~~~ir~~l~~~~~~~k~~~l~kli~~-~~~G~d~~~-~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~--~~e~~~l~in 110 (618)
T 1w63_A 35 ECAAIRSSFREEDNTYRCRNVAKLLYM-HMLGYPAHF-GQLECLKLIASQKFTDKRIGYLGAMLLLDE--RQDVHLLMTN 110 (618)
T ss_dssp HHHHHHHHHTTTCTTTHHHHHHHHHHH-HHTTCCCGG-GHHHHHHHHHSSSHHHHHHHHHHHHHHCCC--CHHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHH-HHcCCCCcc-hHHHHHHHHcCCchHHHHHHHHHHHHHhCC--CcHHHHHHHH
Confidence 466777888888888888888777665 345643221 111222222345555554444444444332 2222344556
Q ss_pred HHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHH
Q 007863 90 PLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYR 169 (587)
Q Consensus 90 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~ 169 (587)
.+.+-+.++++.+|..|+++++.+.. ..+.+.+.|.+.++..+.++.+|..|+..+..++... ++..+.+++.+.
T Consensus 111 ~l~kDL~~~n~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v~~~~~~l~ 185 (618)
T 1w63_A 111 CIKNDLNHSTQFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELMEMFLPATK 185 (618)
T ss_dssp HHHHHHSCSSSHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGGGGGGGGTT
T ss_pred HHHHhcCCCCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHHHHHHHHHH
Confidence 67777789999999999999999873 2455678888888888889999999988887777654 344457888888
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHhcc-----------cCchhHHHHHHHHHHHHhccc
Q 007863 170 QLCQDDMPMVRRSAATNLGKFAATVEA-----AHLKSEIMSIFEELTQ-----------DDQDSVRLLAVEGCGALGKLL 233 (587)
Q Consensus 170 ~l~~~~~~~vR~~a~~~l~~l~~~~~~-----~~~~~~i~~~l~~l~~-----------d~~~~vr~~a~~~l~~l~~~~ 233 (587)
.++.|+++.|+..++.+|+.++..-++ ....+.++..+..+.. ..++..+...+++++.+...-
T Consensus 186 ~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~ 265 (618)
T 1w63_A 186 NLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND 265 (618)
T ss_dssp TSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC
T ss_pred HHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC
Confidence 999999999999999999998754321 1123334444444322 236777888888888877542
Q ss_pred ChhhhhhchHHHHHHhc------CCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHH
Q 007863 234 EPQDCVAHILPVIVNFS------QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKI 307 (587)
Q Consensus 234 ~~~~~~~~l~~~l~~~~------~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 307 (587)
+. ..+.+.+.+.+++ ++.+..|...+++++..+.. .........+.+..++.++++++|..|+.+|+.+
T Consensus 266 ~~--~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i 340 (618)
T 1w63_A 266 DD--SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKT 340 (618)
T ss_dssp HH--HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 21 2344555555543 23466888888888765421 1111123567778888888999999999999999
Q ss_pred HHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhh
Q 007863 308 CRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (587)
Q Consensus 308 ~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~ 387 (587)
+...+ .......+.+..++.|++..+|..+++.+..++..-. .+.+++.+...+.+.+.++|..++.+++.++.
T Consensus 341 ~~~~p--~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n----v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 341 VQTDH--NAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN----IRGMMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HHHHH--HHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS----THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HhhCH--HHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccccc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 87522 2234456677788899999999999999999875422 23455666677777889999999999999998
Q ss_pred hhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHH
Q 007863 388 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD--KVYSIRDAAANNVKRLAE 465 (587)
Q Consensus 388 ~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~ 465 (587)
.+.... ...++.+.+++.+....++..++..+..+....+ + .....++.+...+.+ ....+...++.++|+.+.
T Consensus 415 k~~~~~--~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p-~-l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~ 490 (618)
T 1w63_A 415 KYAPSK--RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSV-E-MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGD 490 (618)
T ss_dssp SSCCCH--HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSC-S-THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHH
T ss_pred HhCccH--HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCh-h-HHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHH
Confidence 765432 4577888888877666666666666666655432 1 223344445555443 233455578999999987
Q ss_pred HhChh---------hhhhchHHHHHhhhc--CCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHH
Q 007863 466 EFGPD---------WAMQHIVPQVLEMIN--NPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNV 534 (587)
Q Consensus 466 ~~~~~---------~~~~~~~~~l~~~l~--~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a 534 (587)
.+... .....+++.+..++. ..+..+|..++.++..+....+.. .+.+...+..+..|.+++||..|
T Consensus 491 ~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~--~~~l~~~L~~~~~~~d~evrdRA 568 (618)
T 1w63_A 491 LLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT--VNRIKKVVSIYGSSIDVELQQRA 568 (618)
T ss_dssp HHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC--HHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch--HHHHHHHHHHhcCCCCHHHHHHH
Confidence 65320 001234455555443 467889999999999998765432 34555556666788899999999
Q ss_pred HHHHHHHHh
Q 007863 535 AKVLQSLIP 543 (587)
Q Consensus 535 ~~~l~~l~~ 543 (587)
...+..+..
T Consensus 569 ~~y~~ll~~ 577 (618)
T 1w63_A 569 VEYNALFKK 577 (618)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcC
Confidence 998887754
No 31
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.84 E-value=6.4e-18 Score=172.96 Aligned_cols=539 Identities=12% Similarity=0.057 Sum_probs=353.5
Q ss_pred CCcccHHHHHHHhcCcc--HHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCCcch
Q 007863 6 EPLYPIAVLIDELKNDD--IQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEY 83 (587)
Q Consensus 6 ~~~~~~~~l~~~l~s~d--~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~ 83 (587)
.+|-.+..++..+.+.. .++|...-..+..+...+.. +...+..+.+..+.+.+.-+. .| .+
T Consensus 8 ~~~~~l~~~I~~ir~~~~~~~e~~~i~~E~~~ir~~~~~------------~~~~~~~~k~~~l~Kli~l~~--~G-~d- 71 (621)
T 2vgl_A 8 EGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKG------------DKALDGYSKKKYVCKLLFIFL--LG-HD- 71 (621)
T ss_dssp -CCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHS------------SSCCCHHHHHHHHHHHHHHHH--HS-CC-
T ss_pred CCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhc------------CCCCCHHHHHHHHHHHHHHHH--cC-CC-
Confidence 45666888888887653 34555444455555433311 000112223334444433221 23 22
Q ss_pred HhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHH
Q 007863 84 ANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTE 163 (587)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~ 163 (587)
.+...+-+.+++.+++...|+.+.-++..+++.-+ +. .......+.+=..++++.+|..|+..++.+. .++..+.
T Consensus 72 ~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~-e~-~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~---~~e~~~~ 146 (621)
T 2vgl_A 72 IDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS-EL-IRLINNAIKNDLASRNPTFMGLALHCIANVG---SREMAEA 146 (621)
T ss_dssp CCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH-HH-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC---CHHHHHH
T ss_pred CchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc-HH-HHHHHHHHHHhcCCCCHHHHHHHHHHhhccC---CHHHHHH
Confidence 23344555567788999999998888888776532 21 2223344444455677888988888887773 3678888
Q ss_pred HHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHhcccCchhHHHHHHHHHHHHhcccChh--h
Q 007863 164 LRTIYRQLC--QDDMPMVRRSAATNLGKFAATVEAAHLKS--EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--D 237 (587)
Q Consensus 164 l~~~l~~l~--~~~~~~vR~~a~~~l~~l~~~~~~~~~~~--~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~ 237 (587)
+.+.+.+++ .|.++.||+.|+-++..+....++ ..+ .+.+.+.++++|.++.|+.+|+.++..+...-+.. .
T Consensus 147 l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~--~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~ 224 (621)
T 2vgl_A 147 FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD--LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKT 224 (621)
T ss_dssp HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG--GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh--hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHH
Confidence 999999999 999999999999999999985433 333 67888888999999999999999998887653321 1
Q ss_pred hhhchHHHHHHhcCCC-------------chHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhc---CC---------C
Q 007863 238 CVAHILPVIVNFSQDK-------------SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL---RD---------N 292 (587)
Q Consensus 238 ~~~~l~~~l~~~~~d~-------------~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~d---------~ 292 (587)
..+.++..+.+++.+. ++..+...++.++.++.. +.......+.+.+..++ .+ .
T Consensus 225 ~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~-~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~ 303 (621)
T 2vgl_A 225 SVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPP-EDPAVRGRLTECLETILNKAQEPPKSKKVQHS 303 (621)
T ss_dssp HHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSC-SSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhhccCccccccccc
Confidence 2333444444443221 567777777776654321 00011112333332222 11 1
Q ss_pred h--HHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcC-C
Q 007863 293 E--AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-D 369 (587)
Q Consensus 293 ~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d 369 (587)
+ ..|...|++++..+. ..........+.+..++.+++..+|..++.++..++...+.........+.+...++ |
T Consensus 304 n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d 380 (621)
T 2vgl_A 304 NAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTE 380 (621)
T ss_dssp HHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccC
Confidence 2 367777777776653 223444667788888888899999999999999998765422344556677778888 9
Q ss_pred CChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCc
Q 007863 370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKV 449 (587)
Q Consensus 370 ~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~ 449 (587)
++..||..++..+..++.. ...+.++..+...+.+.+..+|..++..++.++..+.+. ...++..+++++.+..
T Consensus 381 ~d~~Ir~~aL~lL~~l~~~----~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~--~~~~v~~Ll~ll~~~~ 454 (621)
T 2vgl_A 381 RDVSVRQRAVDLLYAMCDR----SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD--YTWYVDTILNLIRIAG 454 (621)
T ss_dssp CCHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS--THHHHHHHHHHHHHHG
T ss_pred CCHhHHHHHHHHHHHHcCh----hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHhhc
Confidence 9999999999998888743 223567788888888889999999999999998877543 3456777777776655
Q ss_pred hHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCcc--HHHHHHHHHHHHhhcccChHH-H-HHhHHHHHHhhcCC
Q 007863 450 YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHY--LYRMTILQAISLLAPVMGSEI-T-CSQLLPVVINASKD 525 (587)
Q Consensus 450 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~--~~r~~a~~~l~~l~~~~~~~~-~-~~~~l~~l~~~l~d 525 (587)
..+...++..+..++..... .....+..+.+.+.++.. .+-..+++.+|..+..+.... . ...++..+.+.+.+
T Consensus 455 ~~v~~ev~~~l~~ii~~~~~--~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~ 532 (621)
T 2vgl_A 455 DYVSEEVWYRVIQIVINRDD--VQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHL 532 (621)
T ss_dssp GGSCSHHHHHHHHHHGGGCS--CHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHhCChh--HHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhcc
Confidence 55666677777766654322 245566677777777753 344567799999887443211 0 12345566666678
Q ss_pred CCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcC--CCCccHHHHHHHHHHHHH
Q 007863 526 RVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSE--DPDVDVRFFATQALQSKD 581 (587)
Q Consensus 526 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~--d~~~~Vr~~a~~al~~l~ 581 (587)
.++.+|..++.++..++...+. ..+.+...|..... |.+.+||.+|..-+.-+.
T Consensus 533 ~~~~v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 533 CSVPTRALLLSTYIKFVNLFPE--VKATIQDVLRSDSQLKNADVELQQRAVEYLRLST 588 (621)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc
Confidence 8999999999999999776532 33455566655666 999999999998776653
No 32
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.83 E-value=5.1e-18 Score=170.95 Aligned_cols=377 Identities=12% Similarity=0.115 Sum_probs=268.6
Q ss_pred HHHHHHhcccCchhHHHHHHHHHHHHhcccC--h--hhhhhchHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCC---C
Q 007863 204 MSIFEELTQDDQDSVRLLAVEGCGALGKLLE--P--QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---E 275 (587)
Q Consensus 204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~--~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~---~ 275 (587)
++-+.+.++++++..+..|...+.++.+.-. + .-+...++|.+.++++ +.++.++..|+.+|++++..-.. .
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3444556666777777777777776654321 1 2234457888888876 44678888888988888742110 0
Q ss_pred CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---HHHHHhHHHHHhHhcCCCc-----HHHHHHHHHHHHhhh
Q 007863 276 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSDSS-----QHVRSALATVIMGMA 347 (587)
Q Consensus 276 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~-----~~vr~~a~~~l~~l~ 347 (587)
......+|.+..++++++.+||..|+.+|+.++..... .......++.+..++.+++ ..+...++.++..++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 11234789999999999999999999999998753211 1222346777777776543 346667777777776
Q ss_pred hhhc---hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh---hHhhhhHHHHHHHhcCCCcHHHHHHHHHH
Q 007863 348 PILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYI 421 (587)
Q Consensus 348 ~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l 421 (587)
..-. .-.....++|.+..++.+.+++++..++++|..++..-... .....++|.+..++.++++.++..++..+
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 5322 22334678899999999999999999999999988543211 12345789999999999999999999999
Q ss_pred HHHHHhhCh---hhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh---hhhhchHHHHHhhhcCCccHHHHHH
Q 007863 422 PLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTI 495 (587)
Q Consensus 422 ~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~~a 495 (587)
+.++..-.. .......++.+..++.+++..+|..|+.+|+.++...... .....++|.+..++.+++..+|..|
T Consensus 299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 378 (510)
T 3ul1_B 299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA 378 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence 887643211 1112234666778889999999999999999987522111 1346789999999999999999999
Q ss_pred HHHHHHhhcccChHH----HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch----HHH-----HHhHHHHHHHhc
Q 007863 496 LQAISLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ----SVV-----EKSIRPCLVELS 562 (587)
Q Consensus 496 ~~~l~~l~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~----~~~-----~~~i~~~l~~l~ 562 (587)
+++|.+++.....+. .....++.+..++.++++.++..++.+|..+....+. +.+ ....+..|..|.
T Consensus 379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq 458 (510)
T 3ul1_B 379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ 458 (510)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHH
Confidence 999999987554432 2356789999999999999999999999998764321 122 123567888899
Q ss_pred CCCCccHHHHHHHHHHHH
Q 007863 563 EDPDVDVRFFATQALQSK 580 (587)
Q Consensus 563 ~d~~~~Vr~~a~~al~~l 580 (587)
..++.+|+..|.+.+.++
T Consensus 459 ~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 459 RHENESVYKASLNLIEKY 476 (510)
T ss_dssp GCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999888764
No 33
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.82 E-value=2.4e-17 Score=167.14 Aligned_cols=376 Identities=12% Similarity=0.114 Sum_probs=267.6
Q ss_pred HHHHHhcccCchhHHHHHHHHHHHHhcccC--h--hhhhhchHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCC---CC
Q 007863 205 SIFEELTQDDQDSVRLLAVEGCGALGKLLE--P--QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---EP 276 (587)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~--~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~---~~ 276 (587)
+.+.+.++++++..+..|+..+.++...-. + ......++|.+.+++. +.++.++..|+.+|..++..-.. ..
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v 158 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 158 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344445566666666666666665543221 1 2234557888888775 45688888888888888742110 11
Q ss_pred cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---HHHHHhHHHHHhHhcCCCc-----HHHHHHHHHHHHhhhh
Q 007863 277 TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSDSS-----QHVRSALATVIMGMAP 348 (587)
Q Consensus 277 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~-----~~vr~~a~~~l~~l~~ 348 (587)
.....+|.+..++++++.++|..|+.+|+.++..-.. .......++.+..++.+++ ..+...++.++..++.
T Consensus 159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 238 (529)
T 3tpo_A 159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 238 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence 1234789999999999999999999999998753111 1222346777777776543 3456677777777765
Q ss_pred hhc---hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh---hHhhhhHHHHHHHhcCCCcHHHHHHHHHHH
Q 007863 349 ILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIP 422 (587)
Q Consensus 349 ~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~ 422 (587)
.-. .......++|.+..++.+.+++++..++++|..++..-... .....++|.+..++.++++.++..++.+++
T Consensus 239 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~ 318 (529)
T 3tpo_A 239 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 318 (529)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHH
Confidence 322 22334668899999999999999999999999987543211 123467899999999999999999999998
Q ss_pred HHHHhhCh---hhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh---hhhhchHHHHHhhhcCCccHHHHHHH
Q 007863 423 LLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTIL 496 (587)
Q Consensus 423 ~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~~a~ 496 (587)
.++..-.. .......++.+..++.+++..+|..|+.+|+.++...... .....++|.+..++.+++..+|..|+
T Consensus 319 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~ 398 (529)
T 3tpo_A 319 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAA 398 (529)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHH
Confidence 88642111 1122345777889999999999999999999997532111 13466899999999999999999999
Q ss_pred HHHHHhhcccChHH----HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch----HHHHH-----hHHHHHHHhcC
Q 007863 497 QAISLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ----SVVEK-----SIRPCLVELSE 563 (587)
Q Consensus 497 ~~l~~l~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~-----~i~~~l~~l~~ 563 (587)
++|.+++.....+. ....+++.+..++.++++.++..++.+|..+....+. +.+.. ..+..|..|..
T Consensus 399 ~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~ 478 (529)
T 3tpo_A 399 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 478 (529)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHc
Confidence 99999987554442 2345789999999999999999999999998764321 22221 24677888888
Q ss_pred CCCccHHHHHHHHHHHH
Q 007863 564 DPDVDVRFFATQALQSK 580 (587)
Q Consensus 564 d~~~~Vr~~a~~al~~l 580 (587)
.++.+|+..|.+.+.+.
T Consensus 479 ~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 479 HENESVYKASLNLIEKY 495 (529)
T ss_dssp CSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999998888764
No 34
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.80 E-value=2.5e-17 Score=165.96 Aligned_cols=378 Identities=10% Similarity=0.077 Sum_probs=278.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhccc-CchhHHHHHHHHHHHHhcccChh---h
Q 007863 166 TIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEPQ---D 237 (587)
Q Consensus 166 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~---~ 237 (587)
+-+.+.+.++++.++..++..+.++.+.-..++ +..-++|.|.++++. +++.++..|+.+|..++..-++. .
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v 139 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 139 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 444566788889999999999998865433222 223368899998864 45789999999999998654331 1
Q ss_pred hhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC---CCCcccchHHHHHHhcCCCh-----HHHHHHHHHhHHHHHH
Q 007863 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRDNE-----AEVRIAAAGKVTKICR 309 (587)
Q Consensus 238 ~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~~ 309 (587)
.....+|.+..++++++..+|..|+.+|++++.... ........++.+..++.+.+ ..+...++.++..++.
T Consensus 140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 219 (510)
T 3ul1_B 140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219 (510)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence 234579999999999999999999999999974311 01112346788888887643 3466777888888776
Q ss_pred hhCH---HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH---HHHHhHHHHHHHhcCCCChHHHHHHHHHhH
Q 007863 310 ILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLD 383 (587)
Q Consensus 310 ~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 383 (587)
.-.+ -.....++|.+.+++.+++..++..++.++..++...... .....++|.+..++.+.++.++..++.+++
T Consensus 220 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~ 299 (510)
T 3ul1_B 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 299 (510)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHH
Confidence 4322 1334678999999999999999999999999988643211 122357899999999999999999999999
Q ss_pred Hhhhhhchh---hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHcCCCchHHHHHHH
Q 007863 384 QVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAA 457 (587)
Q Consensus 384 ~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~ 457 (587)
.++..-... ......+|.+..++.+++..+|..++..++.++..-.. ......++|.+..++.+.+..+|..|+
T Consensus 300 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa 379 (510)
T 3ul1_B 300 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 379 (510)
T ss_dssp HHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHH
Confidence 987432211 12235677778888999999999999999888642211 112235788999999999999999999
Q ss_pred HHHHHHHHHhChhh----hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcc---cChH-HH-----HHhHHHHHHhhcC
Q 007863 458 NNVKRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV---MGSE-IT-----CSQLLPVVINASK 524 (587)
Q Consensus 458 ~~l~~l~~~~~~~~----~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~---~~~~-~~-----~~~~l~~l~~~l~ 524 (587)
.+|+.++.....+. .....++.+.+++.+++..++..++.+|.++... .+.. .+ ....+..+..+..
T Consensus 380 ~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~ 459 (510)
T 3ul1_B 380 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 459 (510)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGG
T ss_pred HHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHc
Confidence 99999987544432 2367899999999999999999999999988753 2222 11 1234567777778
Q ss_pred CCCccHHHHHHHHHHHHHh
Q 007863 525 DRVPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 525 d~~~~vR~~a~~~l~~l~~ 543 (587)
+++..|+..|.+.|...+.
T Consensus 460 ~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 460 HENESVYKASLNLIEKYFS 478 (510)
T ss_dssp CSSHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHCC
Confidence 8999999999999887764
No 35
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.80 E-value=5.8e-18 Score=157.17 Aligned_cols=254 Identities=20% Similarity=0.144 Sum_probs=176.8
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHH
Q 007863 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360 (587)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 360 (587)
.++.+...++|+++.+|..|+.+|+.++. +..++.+..+++|+++.+|..++.+++.+... ......++
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~---~~~~~~l~ 92 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC---KKCEDNVF 92 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC---TTTHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc---cccchHHH
Confidence 46677777777788888888888777642 34566777777788888888888888777532 11123345
Q ss_pred HHHH-HhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHH
Q 007863 361 PIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 439 (587)
Q Consensus 361 ~~l~-~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 439 (587)
+.+. .+++|+++.||..++.+|+.+....+ ...+.++|.+...+.|+++.+|..++..++.+.. +..+|
T Consensus 93 ~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~ 162 (280)
T 1oyz_A 93 NILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIP 162 (280)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHH
Confidence 5555 35677788888888888887764321 1124567777778888888888888888765543 22466
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHH
Q 007863 440 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV 519 (587)
Q Consensus 440 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l 519 (587)
.+...+.|+++.||..|+.+|+.+. .. ....+|.+...+.|+++.+|..++.+++.+.. +..+|.+
T Consensus 163 ~L~~~l~d~~~~vr~~a~~aL~~~~----~~--~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--------~~~~~~L 228 (280)
T 1oyz_A 163 LLINLLKDPNGDVRNWAAFAININK----YD--NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSVL 228 (280)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHT----CC--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhhc----cC--cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--------HhhHHHH
Confidence 7777788888888888888887762 11 24567788888888888889888888888763 3466777
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcC-CCCccHHHHHHHHHHH
Q 007863 520 INASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSE-DPDVDVRFFATQALQS 579 (587)
Q Consensus 520 ~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~-d~~~~Vr~~a~~al~~ 579 (587)
...++|++ +|..++.+|+.+.. ..++|.|.+++. +++++++..+..+++.
T Consensus 229 ~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 229 CDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred HHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 77777743 88888888888754 256777777654 4567788777777653
No 36
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.79 E-value=1.9e-16 Score=160.49 Aligned_cols=379 Identities=10% Similarity=0.081 Sum_probs=278.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhcc-cCchhHHHHHHHHHHHHhcccCh---h
Q 007863 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEP---Q 236 (587)
Q Consensus 165 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~---~ 236 (587)
++-+...+.++++..+..++..+.++...-..+ ....-++|.|.+++. ++++.++..|+.+|..++..-+. .
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~ 157 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 157 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 344556667888999998888888876432221 223346888888886 45688999999999999875443 1
Q ss_pred hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC---CCCcccchHHHHHHhcCCCh-----HHHHHHHHHhHHHHH
Q 007863 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRDNE-----AEVRIAAAGKVTKIC 308 (587)
Q Consensus 237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~ 308 (587)
......+|.+..++.+++..+|..|+.+|++++..-. ........++.+..++.+.+ ..+...++.++..++
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 2344588999999999999999999999999974211 01112346788888887543 346677788888877
Q ss_pred HhhCH---HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH---HHHHhHHHHHHHhcCCCChHHHHHHHHHh
Q 007863 309 RILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKL 382 (587)
Q Consensus 309 ~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 382 (587)
..-.+ ......++|.+..++.+++..++..++.++..++...... .....++|.+..++.++++.++..++.++
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL 317 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 317 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHH
Confidence 64322 1334678999999999999999999999999887643211 12245789999999999999999999999
Q ss_pred HHhhhhhch---hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHcCCCchHHHHHH
Q 007863 383 DQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAA 456 (587)
Q Consensus 383 ~~i~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a 456 (587)
+.++..-.. .......+|.+..++.+++..+|..++..++.++..-.. ......++|.+..++.+.+..+|..|
T Consensus 318 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 397 (529)
T 3tpo_A 318 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAA 397 (529)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHH
Confidence 998743211 112345778888999999999999999999988753211 11223578899999999999999999
Q ss_pred HHHHHHHHHHhChhh----hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcc---cCh-HHHH-----HhHHHHHHhhc
Q 007863 457 ANNVKRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV---MGS-EITC-----SQLLPVVINAS 523 (587)
Q Consensus 457 ~~~l~~l~~~~~~~~----~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~---~~~-~~~~-----~~~l~~l~~~l 523 (587)
+.+|+.++..-..+. ....+++.+.+++..++..++..++.+|.++... .+. +.+. ...+..+..+.
T Consensus 398 ~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq 477 (529)
T 3tpo_A 398 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ 477 (529)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHH
Confidence 999999987544432 2356899999999999999999999999988752 222 2121 12355677777
Q ss_pred CCCCccHHHHHHHHHHHHHh
Q 007863 524 KDRVPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 524 ~d~~~~vR~~a~~~l~~l~~ 543 (587)
.+++..|+..|.+.|...+.
T Consensus 478 ~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 478 RHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp GCSSHHHHHHHHHHHHHHC-
T ss_pred cCCCHHHHHHHHHHHHHHCC
Confidence 88999999999999887654
No 37
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.78 E-value=1.7e-15 Score=165.06 Aligned_cols=526 Identities=10% Similarity=0.061 Sum_probs=318.0
Q ss_pred cccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccC----------
Q 007863 8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY---------- 77 (587)
Q Consensus 8 ~~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~---------- 77 (587)
+..+..++....|+|...| |.+.|...- ..+..+..|+..+.+. +.+.++|..++-.+.+....
T Consensus 4 ~~~l~~~L~~~~spd~~~r--Ae~~L~~~~---~~p~~~~~L~~il~~~-~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~ 77 (960)
T 1wa5_C 4 LETVAKFLAESVIASTAKT--SERNLRQLE---TQDGFGLTLLHVIAST-NLPLSTRLAGALFFKNFIKRKWVDENGNHL 77 (960)
T ss_dssp HHHHHHHHHHTTSGGGHHH--HHHHHHHHH---TSTTHHHHHHHHHHCT-TSCHHHHHHHHHHHHHHHHHHSBCSSSCBS
T ss_pred HHHHHHHHHHhcCCCHHHH--HHHHHHHhh---cCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhcCCCcccCCC
Confidence 3456777777788999998 888887652 1223444455444321 23568898888888765431
Q ss_pred cCCcchHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCC
Q 007863 78 VGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAP 157 (587)
Q Consensus 78 ~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~ 157 (587)
++ .+....+-..+...+.+++..+|..+..++..+++.-.++. ++.++|.+.+...+++...+..+..++..+++...
T Consensus 78 l~-~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~-Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~ 155 (960)
T 1wa5_C 78 LP-ANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDR-WPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWR 155 (960)
T ss_dssp SC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTT-CTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGT
T ss_pred CC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccc-hhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12 12223333333333334458999999999999998755543 56789999888877766677777777776665321
Q ss_pred -----HHH-------HHHH----HHHHHHh---cCCCCH---HHH------HHHHHHHHHHHHH-Hhh--hhhHHHHHHH
Q 007863 158 -----EAL-------KTEL----RTIYRQL---CQDDMP---MVR------RSAATNLGKFAAT-VEA--AHLKSEIMSI 206 (587)
Q Consensus 158 -----~~~-------~~~l----~~~l~~l---~~~~~~---~vR------~~a~~~l~~l~~~-~~~--~~~~~~i~~~ 206 (587)
++. .... ++++... +.++.. .+| ..+++++..+... .+. .......++.
T Consensus 156 ~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~ 235 (960)
T 1wa5_C 156 PLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGI 235 (960)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHH
T ss_pred HhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 111 1112 2333222 444322 234 2233333332210 011 1122334455
Q ss_pred HHHhccc----------Cc-----hhHHHHHHHHHHHHhcccChh--hhhhchHHHHHHhcC-----CCchHHHHHHHHH
Q 007863 207 FEELTQD----------DQ-----DSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQ-----DKSWRVRYMVANQ 264 (587)
Q Consensus 207 l~~l~~d----------~~-----~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~-----d~~~~vR~~a~~~ 264 (587)
+...+.. +. +.+|+.+++++..+.+..++. .+.+.+++.+.+.+. ..+..++..+++.
T Consensus 236 ~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~f 315 (960)
T 1wa5_C 236 FHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSF 315 (960)
T ss_dssp HHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHH
T ss_pred HHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 4444321 11 357888888888887665442 223445555555443 3467888888888
Q ss_pred HHHHHHHhC-CCC-----cccchH-HHHHHhc-----------------------CCChHHHHHHHHHhHHHHHHhhCHH
Q 007863 265 LYELCEAVG-PEP-----TRSDVV-PAYVRLL-----------------------RDNEAEVRIAAAGKVTKICRILNPE 314 (587)
Q Consensus 265 l~~l~~~~~-~~~-----~~~~l~-~~l~~~l-----------------------~d~~~~vr~~a~~~l~~l~~~~~~~ 314 (587)
+..++..-. ... ....++ +.+...+ .+..+.+|.+|...+..++..++ +
T Consensus 316 l~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~ 394 (960)
T 1wa5_C 316 LTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-V 394 (960)
T ss_dssp HHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-H
T ss_pred HHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-h
Confidence 887753210 011 111222 2222221 01224689999999999999887 4
Q ss_pred HHHHhHHHHHhHhcC------CCcHHHHHHHHHHHHhhhhhh-----chH------HHHHhHHHHHHHhcCCC---ChHH
Q 007863 315 LAIQHILPCVKELSS------DSSQHVRSALATVIMGMAPIL-----GKD------ATIEQLLPIFLSLLKDE---FPDV 374 (587)
Q Consensus 315 ~~~~~~~~~l~~~~~------d~~~~vr~~a~~~l~~l~~~~-----~~~------~~~~~l~~~l~~~l~d~---~~~v 374 (587)
...+.+++.+.+.+. +++|+.|.+++.+++.++... +.. ...+.+...+...+.|+ .+.|
T Consensus 395 ~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~v 474 (960)
T 1wa5_C 395 LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIIL 474 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHH
T ss_pred hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCcee
Confidence 455667777766665 678999999999999997532 111 22222233344455666 8999
Q ss_pred HHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC----------hh---hHHHHHHHHH
Q 007863 375 RLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----------VG---FFDDKLGALC 441 (587)
Q Consensus 375 r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~----------~~---~~~~~l~~~l 441 (587)
|..++++++.++..+.++ ....++|.+...+.|++..||..++.++..++.... .+ .+.+.+++.+
T Consensus 475 r~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L 553 (960)
T 1wa5_C 475 RVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNL 553 (960)
T ss_dssp HHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHH
T ss_pred hHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHH
Confidence 999999999999888544 457788888888899999999999999999887421 22 2345566666
Q ss_pred HHHcCCCc-----hHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhh----cCC-ccHHHHHHHHHHHHhhcccChH
Q 007863 442 MQWLKDKV-----YSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMI----NNP-HYLYRMTILQAISLLAPVMGSE 509 (587)
Q Consensus 442 ~~~l~d~~-----~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l----~~~-~~~~r~~a~~~l~~l~~~~~~~ 509 (587)
...+.... ......+..+++.++..++.+. +...+++.+...+ .++ +...+...+.+++.++...+++
T Consensus 554 ~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~ 633 (960)
T 1wa5_C 554 IALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQ 633 (960)
T ss_dssp HHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGG
T ss_pred HHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcc
Confidence 66666531 1134678888998888877653 2344555554432 333 5567777899999988875543
Q ss_pred ---HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHh
Q 007863 510 ---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 510 ---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~ 543 (587)
.+.+.++|.+...+..........+...++.+..
T Consensus 634 ~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 634 NLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 3567788888777766656666666666665543
No 38
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.78 E-value=1.7e-17 Score=153.99 Aligned_cols=255 Identities=15% Similarity=0.075 Sum_probs=198.0
Q ss_pred hchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHh
Q 007863 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQH 319 (587)
Q Consensus 240 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 319 (587)
+.-++.+...+.|+++.+|..|+..|+.+. .+..++.+..+++|+++.+|..|+.+|+.++.. .. ....
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~--~~-~~~~ 90 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC--KK-CEDN 90 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC--TT-THHH
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccC--------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccc--cc-cchH
Confidence 345677888889999999999999998764 245788899999999999999999999887531 11 1234
Q ss_pred HHHHHh-HhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhh
Q 007863 320 ILPCVK-ELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (587)
Q Consensus 320 ~~~~l~-~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~ 398 (587)
+++.+. .+++|+++.||..++.+++.++...+ ...+.++|.+...++|+++.||..++.+|+.+.. +..
T Consensus 91 l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~ 160 (280)
T 1oyz_A 91 VFNILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KAT 160 (280)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHH
Confidence 556665 35688999999999999998874322 1234567888899999999999999999998753 347
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHH
Q 007863 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 478 (587)
Q Consensus 399 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 478 (587)
+|.+..++.|+++.+|..++..++.+... .+...+.+...+.|+++.||..|+.+|+.+. ....+|
T Consensus 161 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--------~~~~~~ 226 (280)
T 1oyz_A 161 IPLLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--------DKRVLS 226 (280)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--------CGGGHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--------CHhhHH
Confidence 88888899999999999999999776311 2456788888999999999999999998864 245788
Q ss_pred HHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCC-CCccHHHHHHHHHH
Q 007863 479 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD-RVPNIKFNVAKVLQ 539 (587)
Q Consensus 479 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d-~~~~vR~~a~~~l~ 539 (587)
.+...+.|++ +|..++.+++.++. +..+|.+..++.+ +++.++..++..+.
T Consensus 227 ~L~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 227 VLCDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 8888888765 88899999998865 3577888888765 56778877777664
No 39
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.76 E-value=1.2e-15 Score=156.11 Aligned_cols=462 Identities=12% Similarity=0.057 Sum_probs=306.4
Q ss_pred hhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHH
Q 007863 99 ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPM 178 (587)
Q Consensus 99 ~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~ 178 (587)
+...|..++.-+-.+.- .|.+ + ....+-+.++..++++..|..++-.+....+. .++..-..++.+.+-++|+++.
T Consensus 51 ~~~~k~~~l~Kli~l~~-~G~d-~-s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~-~~e~~~L~iN~l~kDl~~~n~~ 126 (621)
T 2vgl_A 51 DGYSKKKYVCKLLFIFL-LGHD-I-DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNS-NSELIRLINNAIKNDLASRNPT 126 (621)
T ss_dssp CHHHHHHHHHHHHHHHH-HSCC-C-CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCC-CHHHHHHHHHHHHHHHHSCCHH
T ss_pred CHHHHHHHHHHHHHHHH-cCCC-C-chhHHHHHHHhcCCCHHHHHHHHHHHHHHccC-CcHHHHHHHHHHHHhcCCCCHH
Confidence 45555555544443322 3332 1 23445555677777777777766665555543 3555566778888888999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhc--ccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchH
Q 007863 179 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELT--QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWR 256 (587)
Q Consensus 179 vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~--~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~ 256 (587)
+|..|+.+++.+.. +.+.+.+.|.+.+++ .|.++.||+.|+.++.++....++....+.+.+.+.+++.|+++.
T Consensus 127 ir~lALr~L~~i~~----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~ 202 (621)
T 2vgl_A 127 FMGLALHCIANVGS----REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLG 202 (621)
T ss_dssp HHHHHHHHHHHHCC----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhhccCC----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCcc
Confidence 99999999999853 467788899999999 899999999999999999985543211137899999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccchHHH----HHHhcCC--C-----------hHHHHHHHHHhHHHHHHhhCHHHHHHh
Q 007863 257 VRYMVANQLYELCEAVGPEPTRSDVVPA----YVRLLRD--N-----------EAEVRIAAAGKVTKICRILNPELAIQH 319 (587)
Q Consensus 257 vR~~a~~~l~~l~~~~~~~~~~~~l~~~----l~~~l~d--~-----------~~~vr~~a~~~l~~l~~~~~~~~~~~~ 319 (587)
|+.+|+..+..++..-+.. ...++|. +.+++.+ - ++..+...++.+..++..-.++ ..+.
T Consensus 203 V~~~a~~~l~~i~~~~~~~--~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~-~~~~ 279 (621)
T 2vgl_A 203 VVTAATSLITTLAQKNPEE--FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPA-VRGR 279 (621)
T ss_dssp HHHHHHHHHHHHHHHCHHH--HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHH-HHHH
T ss_pred HHHHHHHHHHHHHHhChHH--HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHH-HHHH
Confidence 9999999999988652210 1123333 3333321 1 4567777777666654321122 1122
Q ss_pred H---HHHHhHhcC---------CCc--HHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHh
Q 007863 320 I---LPCVKELSS---------DSS--QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 385 (587)
Q Consensus 320 ~---~~~l~~~~~---------d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i 385 (587)
+ ++.+.+.+. +.+ ..|...+++++..+. +...........+..++.+.++++|..++.++..+
T Consensus 280 l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l 356 (621)
T 2vgl_A 280 LTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTL 356 (621)
T ss_dssp HHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 2 222222211 112 266677777766664 23344556777888899889999999999999999
Q ss_pred hhhhchhhHhhhhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 007863 386 NQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA 464 (587)
Q Consensus 386 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 464 (587)
+...+.....+...+.+...+. |++..+|..+++.+..++..- . .+.++.-+...+.+.+.+.|..++..++.++
T Consensus 357 ~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~---N-v~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 357 ASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRS---N-AQQIVAEMLSYLETADYSIREEIVLKVAILA 432 (621)
T ss_dssp TTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH---H-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh---h-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 8765422333556677777777 999999999999987776432 2 3556777777888889999999999999999
Q ss_pred HHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCc--cHHHHHHHHHHHHH
Q 007863 465 EEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP--NIKFNVAKVLQSLI 542 (587)
Q Consensus 465 ~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~--~vR~~a~~~l~~l~ 542 (587)
..+..+ ....+..+.+++.+....+...++..+..+....+. ..+..+..+...+.++.. .+-..+++.+|+.+
T Consensus 433 ~k~~~~--~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~--~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~ 508 (621)
T 2vgl_A 433 EKYAVD--YTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDD--VQGYAAKTVFEALQAPACHENLVKVGGYILGEFG 508 (621)
T ss_dssp HHHCSS--THHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCS--CHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHT
T ss_pred HhcCCc--HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChh--HHHHHHHHHHHHHcCccchHHHHHHHHHHhcchH
Confidence 888654 345566666666554333445555556655543322 334556666777777643 34445668888887
Q ss_pred hhhchHH-H-HHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863 543 PIVDQSV-V-EKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 543 ~~~~~~~-~-~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~ 582 (587)
..+.... . ...++..+.+-..+.++.||..+..|+.++..
T Consensus 509 ~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~ 550 (621)
T 2vgl_A 509 NLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVN 550 (621)
T ss_dssp HHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 6654321 0 01345556555577889999999999888754
No 40
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.76 E-value=5.1e-14 Score=153.39 Aligned_cols=556 Identities=13% Similarity=0.072 Sum_probs=325.7
Q ss_pred HHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccC-CchHHHHHHHHHhcccccCcC----Ccch----
Q 007863 13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENND-DDDEVLLAMAEELGVFIPYVG----GLEY---- 83 (587)
Q Consensus 13 ~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~-~~~~v~~~~~~~l~~~~~~~~----~~~~---- 83 (587)
.+++.+.+.+..+|......+..++....| ..|++++|.|.+... ++...+..+..++..+.+... +.+.
T Consensus 89 ~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l 167 (960)
T 1wa5_C 89 EIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEI 167 (960)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHH
Confidence 456777777799999999999999988777 579999999888653 344455566666666554221 1111
Q ss_pred -------HhhhhhHHHhh---hcCchh---HHH------HHHHHHHHHHHhhcChhhHh---hhhHHHHHHhhcCC----
Q 007863 84 -------ANVLLPPLETL---CTVEET---CVR------DKAVESLCRIGSQMREQDVV---EHFIPLVKRLAAGE---- 137 (587)
Q Consensus 84 -------~~~l~~~l~~l---~~~~~~---~vr------~~a~~~l~~l~~~~~~~~~~---~~ll~~~~~l~~~~---- 137 (587)
.+.++.++..+ +.+++. .+| ..+++++..+...--++.+. ..+++.+.+.....
T Consensus 168 ~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~ 247 (960)
T 1wa5_C 168 KLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLL 247 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 11112222222 333211 233 23444444433221122222 33445544433211
Q ss_pred ------C-----CcchhhHHhhhhhhccCCCHH---HHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHhh--
Q 007863 138 ------W-----FTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQ-----DDMPMVRRSAATNLGKFAATVEA-- 196 (587)
Q Consensus 138 ------~-----~~~r~~a~~l~~~~~~~~~~~---~~~~l~~~l~~l~~-----~~~~~vR~~a~~~l~~l~~~~~~-- 196 (587)
. +.++..++..+..+....++. +...+++.+...+. ..+..++..+++.+..+++.-..
T Consensus 248 ~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~ 327 (960)
T 1wa5_C 248 EDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFE 327 (960)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHG
T ss_pred cCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHH
Confidence 0 123445555555544433332 34455555555443 45678888888888887642111
Q ss_pred ----hhhHHHHH-HHHHHhc-----------------------ccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHH
Q 007863 197 ----AHLKSEIM-SIFEELT-----------------------QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN 248 (587)
Q Consensus 197 ----~~~~~~i~-~~l~~l~-----------------------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 248 (587)
+.+...++ +.+...+ .++.++.|..|..++..++...+ +...+.+++.+.+
T Consensus 328 ~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~ 406 (960)
T 1wa5_C 328 IFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKG 406 (960)
T ss_dssp GGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHH
T ss_pred HHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHH
Confidence 12333333 3332221 11223689999999999998876 4455666777666
Q ss_pred hcC------CCchHHHHHHHHHHHHHHHHhC-CC-Cccc-----chHHHHH----HhcCCC---hHHHHHHHHHhHHHHH
Q 007863 249 FSQ------DKSWRVRYMVANQLYELCEAVG-PE-PTRS-----DVVPAYV----RLLRDN---EAEVRIAAAGKVTKIC 308 (587)
Q Consensus 249 ~~~------d~~~~vR~~a~~~l~~l~~~~~-~~-~~~~-----~l~~~l~----~~l~d~---~~~vr~~a~~~l~~l~ 308 (587)
.++ +.+|+.|.+|..+++.++.... .. .... ++.+.+. ..+.|+ .+.||..|+.+++.++
T Consensus 407 ~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~ 486 (960)
T 1wa5_C 407 FVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFR 486 (960)
T ss_dssp HHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTG
T ss_pred HHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHH
Confidence 665 6789999999999999975421 11 1111 4545443 334666 8999999999999999
Q ss_pred HhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhh----------chH---HHHHhHHHHHHHhcCCCC---h
Q 007863 309 RILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL----------GKD---ATIEQLLPIFLSLLKDEF---P 372 (587)
Q Consensus 309 ~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~----------~~~---~~~~~l~~~l~~~l~d~~---~ 372 (587)
..+.++ +...+++.+.+.+.|++..||..|+.++..++... ..+ .+.+.+++.+..++.... +
T Consensus 487 ~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~ 565 (960)
T 1wa5_C 487 NQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPE 565 (960)
T ss_dssp GGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHH
T ss_pred hhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCC
Confidence 987654 46788899998899999999999999999988642 122 234555666666665531 1
Q ss_pred H--HHHHHHHHhHHhhhhhchhh--HhhhhHHHHHHHh----cC-CCcHHHHHHHHHHHHHHHhhChhh---HHHHHHHH
Q 007863 373 D--VRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELA----ED-RHWRVRLAIIEYIPLLASQLGVGF---FDDKLGAL 440 (587)
Q Consensus 373 ~--vr~~a~~~l~~i~~~~~~~~--~~~~~~~~l~~~~----~~-~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~ 440 (587)
. ....+..++..++...+.+. +...+++.+...+ ++ .+...+..++++++.++...+++. +.+.++|.
T Consensus 566 ~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~ 645 (960)
T 1wa5_C 566 KLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPT 645 (960)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 1 33466777777776655321 2233444444332 33 466778788999999988755433 45678888
Q ss_pred HHHHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHH--hhhcCCccHHHHHHHHHHHHhhcccChHHHH--Hh
Q 007863 441 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVL--EMINNPHYLYRMTILQAISLLAPVMGSEITC--SQ 514 (587)
Q Consensus 441 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~--~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~--~~ 514 (587)
+...+.....+....+...++.+.... ..+ ....++|.+. ..+..+. .-...+.++..+....+.. +. +.
T Consensus 646 ~~~iL~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~~~~~~~~~-~~~~~~ 721 (960)
T 1wa5_C 646 FLTVFSEDIQEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWELKG--NIPAVTRLLKSFIKTDSSI-FPDLVP 721 (960)
T ss_dssp HHHHHHTTCTTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCTT--THHHHHHHHHHHHHHHGGG-CSCSHH
T ss_pred HHHHHHhhhHhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhcCCC--CchhHHHHHHHHHHhChHH-HHHHHH
Confidence 888887776778888888888888754 211 2345677666 4444332 2223444454443322211 11 33
Q ss_pred HHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH---HHHHhHHHHHHHhc-CCCCccHHHHHHHHH
Q 007863 515 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELS-EDPDVDVRFFATQAL 577 (587)
Q Consensus 515 ~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~l~-~d~~~~Vr~~a~~al 577 (587)
++..+.+++.+... +..++..++.++..++.. ++...+++.+...+ .+.....+......+
T Consensus 722 ~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~ 786 (960)
T 1wa5_C 722 VLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFF 786 (960)
T ss_dssp HHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHH
Confidence 45555555666543 478999999998887754 44555666666643 333445553333333
No 41
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.73 E-value=1.8e-15 Score=165.58 Aligned_cols=565 Identities=11% Similarity=0.037 Sum_probs=332.2
Q ss_pred cccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccC----cCCcc-
Q 007863 8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGLE- 82 (587)
Q Consensus 8 ~~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~----~~~~~- 82 (587)
+..+..++..+.++|++.|..|.+.|..+-+ .+..|..+...+.. +.+.++|..++..|.+.... ++.++
T Consensus 6 ~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~---~p~~w~~~~~lL~~--~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~ 80 (971)
T 2x1g_F 6 IARLEEAVVSFYRSNSQNQAITHEWLTDAEA---SPQAWQFSWQLMQL--GKSQEVQFFGAITLHSKLMKHWHEVPPENR 80 (971)
T ss_dssp -----CTHHHHHTSTTTC----CHHHHHTTT---STHHHHHHHHHTCT--TSCHHHHHHHHHHHHHHHHHCGGGCCGGGH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc---CHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHccHhhCCHHHH
Confidence 4456777777888899999999888866421 23455555555543 45778999998888765432 22222
Q ss_pred --hHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCC------CCcchhhHHhhhhhhcc
Q 007863 83 --YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGE------WFTARVSSCGLFHVAYP 154 (587)
Q Consensus 83 --~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~------~~~~r~~a~~l~~~~~~ 154 (587)
....+++.+..... ..+.||.+...++..+++...+ . ++.+++.+.+...++ +...+..+..++..+.+
T Consensus 81 ~~ir~~ll~~l~~~~~-~~~~vr~kl~~~la~i~~~~~p-~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~E 157 (971)
T 2x1g_F 81 EELKQKILESIVRFAG-GPKIVLNRLCISLGAYIVHMLG-E-WPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPE 157 (971)
T ss_dssp HHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHTTC-C-------HHHHHHHHTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHccc-c-ccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHH
Confidence 23444444444332 3589999999999999998665 3 445666666555432 22344455555554432
Q ss_pred C----CC--------H---HHHHHHHHHHHHhcCCC-C-------HHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHH
Q 007863 155 S----AP--------E---ALKTELRTIYRQLCQDD-M-------PMVRRSAATNLGKFAAT--VEAAHLKSEIMSIFEE 209 (587)
Q Consensus 155 ~----~~--------~---~~~~~l~~~l~~l~~~~-~-------~~vR~~a~~~l~~l~~~--~~~~~~~~~i~~~l~~ 209 (587)
. .+ + ...+.+++++..++.+. + +.++..+++++..+... ++.. ....+++.+..
T Consensus 158 Ei~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~ 236 (971)
T 2x1g_F 158 EAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLE 236 (971)
T ss_dssp HHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHh
Confidence 1 01 0 12345555555554321 1 27899999999988873 4433 55566776555
Q ss_pred hc----------------ccCchhHHHHHHHHHHHHhcccChh---hhhhchHHHHHH-------hcCCCch---HHHHH
Q 007863 210 LT----------------QDDQDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVIVN-------FSQDKSW---RVRYM 260 (587)
Q Consensus 210 l~----------------~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~-------~~~d~~~---~vR~~ 260 (587)
+ .++++.+|..|++++..+...-... .....++|.+.. ...+.+. .....
T Consensus 237 -L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 315 (971)
T 2x1g_F 237 -VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVH 315 (971)
T ss_dssp -HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHH
T ss_pred -hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHH
Confidence 3 1245789999999999988753211 112223333322 2234442 56666
Q ss_pred HHHHHHHHHHHhC--------CC-----CcccchHHHHHHhcC-----CChHHHHHHHHHhHHHHHHhh-C--------H
Q 007863 261 VANQLYELCEAVG--------PE-----PTRSDVVPAYVRLLR-----DNEAEVRIAAAGKVTKICRIL-N--------P 313 (587)
Q Consensus 261 a~~~l~~l~~~~~--------~~-----~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~-~--------~ 313 (587)
.++.+..++.... +. .....+++.+..... ..+++|+..++..+..+++.. + .
T Consensus 316 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~ 395 (971)
T 2x1g_F 316 IYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHK 395 (971)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHH
Confidence 6777777663211 10 011134455554432 346788999998888877622 1 1
Q ss_pred -----HHHHHhHHHHHhHhcC---CC-----c-------HHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCC----
Q 007863 314 -----ELAIQHILPCVKELSS---DS-----S-------QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD---- 369 (587)
Q Consensus 314 -----~~~~~~~~~~l~~~~~---d~-----~-------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d---- 369 (587)
..+...+++.+...+. |. + ...|.++...+..++..++ +...+.+.+.+...+..
T Consensus 396 ~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~ 474 (971)
T 2x1g_F 396 CWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRH 474 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCC
Confidence 1222334444433331 11 1 2577888888888887776 44556666666666543
Q ss_pred -CChHHHHHHHHHhHHhhhhhchhh--HhhhhHHHHHHHh-cCCCcHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHH
Q 007863 370 -EFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQW 444 (587)
Q Consensus 370 -~~~~vr~~a~~~l~~i~~~~~~~~--~~~~~~~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~ 444 (587)
.+...+.+++.+++.+++...... ..+.+++.+..+. .|.++.+|..++..++.++..+... .+.+.+++.++..
T Consensus 475 ~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~ 554 (971)
T 2x1g_F 475 PTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRG 554 (971)
T ss_dssp TTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 567899999999999987765432 2334555433333 2568999999999999999877632 3456678888888
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCC--ccHHHHHHHHHHHHhhcccChH---HHHHhHHH
Q 007863 445 LKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNP--HYLYRMTILQAISLLAPVMGSE---ITCSQLLP 517 (587)
Q Consensus 445 l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~ 517 (587)
+ | +.|+..|+.++..+++.++... +.+.++..+.+++..+ +...+...+.+++.++...+.+ .+...+++
T Consensus 555 l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~ 631 (971)
T 2x1g_F 555 L-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVS 631 (971)
T ss_dssp H-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred h-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8 4 7899999999999998776542 3456666666666663 4678999999999998766522 23334444
Q ss_pred HHH----hhcCCC--CccHHHHHHHHHHH---HHhhhch---------------HHHHHhHHHHHHHhcCC--CCccHHH
Q 007863 518 VVI----NASKDR--VPNIKFNVAKVLQS---LIPIVDQ---------------SVVEKSIRPCLVELSED--PDVDVRF 571 (587)
Q Consensus 518 ~l~----~~l~d~--~~~vR~~a~~~l~~---l~~~~~~---------------~~~~~~i~~~l~~l~~d--~~~~Vr~ 571 (587)
.+. ..++.. ++.-+.....+++. +...++. ..+.+.++|.+..++.+ .+..|..
T Consensus 632 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e 711 (971)
T 2x1g_F 632 PCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLE 711 (971)
T ss_dssp HHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 333 333333 33344444444444 4343321 13456678888876543 3668999
Q ss_pred HHHHHHHHHHHHhhc
Q 007863 572 FATQALQSKDQVMMS 586 (587)
Q Consensus 572 ~a~~al~~l~~~~~~ 586 (587)
.+..+++.++..+|.
T Consensus 712 ~~~~~~~~~~~~~~~ 726 (971)
T 2x1g_F 712 AACSAMKHAITNLRS 726 (971)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999999888775
No 42
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.73 E-value=5.5e-14 Score=153.91 Aligned_cols=563 Identities=9% Similarity=0.033 Sum_probs=326.0
Q ss_pred HHHHHHHhcCc------cHHHHHHHhhcHHHHHHHhChh--------------hhhhhhcccccccc----CC-----ch
Q 007863 11 IAVLIDELKND------DIQLRLNSIRRLSTIARALGEE--------------RTRKELIPFLSENN----DD-----DD 61 (587)
Q Consensus 11 ~~~l~~~l~s~------d~~~R~~a~~~l~~~~~~~~~~--------------~~~~~l~p~l~~~~----~~-----~~ 61 (587)
+..++..++++ ++..+..++..|..+...+... ...+.+++++.+.+ ++ ..
T Consensus 124 l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~ 203 (971)
T 2x1g_F 124 IEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAY 203 (971)
T ss_dssp --HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccch
Confidence 55667777664 6678888888888776432100 01123334443322 11 12
Q ss_pred HHHHHHHHHhccccc--CcCCcchHhhhhhHHHhh----h-----------cCchhHHHHHHHHHHHHHHhhcChh---h
Q 007863 62 EVLLAMAEELGVFIP--YVGGLEYANVLLPPLETL----C-----------TVEETCVRDKAVESLCRIGSQMREQ---D 121 (587)
Q Consensus 62 ~v~~~~~~~l~~~~~--~~~~~~~~~~l~~~l~~l----~-----------~~~~~~vr~~a~~~l~~l~~~~~~~---~ 121 (587)
+++..+.+++..+.. .++.. ....+++.+..+ . .++++.+|+.|++++..+...-.++ .
T Consensus 204 ~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~ 282 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPK 282 (971)
T ss_dssp HHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHH
T ss_pred hHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHH
Confidence 678888888876554 23322 334555544432 0 1367899999999999998742211 1
Q ss_pred HhhhhHHHHHH----hh---cCCCC---cchhhHHhhhhhhccCC-----------C---HHHHHHHHHHHHHhcCC---
Q 007863 122 VVEHFIPLVKR----LA---AGEWF---TARVSSCGLFHVAYPSA-----------P---EALKTELRTIYRQLCQD--- 174 (587)
Q Consensus 122 ~~~~ll~~~~~----l~---~~~~~---~~r~~a~~l~~~~~~~~-----------~---~~~~~~l~~~l~~l~~~--- 174 (587)
....++|.+.. +. .+++. ......+.++..+.+.. . ......+++.+.....+
T Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~ 362 (971)
T 2x1g_F 283 TAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGI 362 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCC
Confidence 22223333322 11 22221 33333344443332111 1 12344556666665433
Q ss_pred --CCHHHHHHHHHHHHHHHHHHh-------h-------hhhHHHHHHHHHHhcc-cCc--------------hhHHHHHH
Q 007863 175 --DMPMVRRSAATNLGKFAATVE-------A-------AHLKSEIMSIFEELTQ-DDQ--------------DSVRLLAV 223 (587)
Q Consensus 175 --~~~~vR~~a~~~l~~l~~~~~-------~-------~~~~~~i~~~l~~l~~-d~~--------------~~vr~~a~ 223 (587)
.+..|+..++..+..+++... . ..+...+++.+...+. +++ ...|..+.
T Consensus 363 ~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~ 442 (971)
T 2x1g_F 363 YPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDIS 442 (971)
T ss_dssp TTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHH
T ss_pred CCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHH
Confidence 467889999998888876321 0 1222333443333321 111 14678888
Q ss_pred HHHHHHhcccChhhhhhchHHHHHHhcCC-----CchHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhc-CCChHH
Q 007863 224 EGCGALGKLLEPQDCVAHILPVIVNFSQD-----KSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLL-RDNEAE 295 (587)
Q Consensus 224 ~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-----~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d~~~~ 295 (587)
.++..++...+ +...+.+.+.+...+.. .+|..|.+++.+++.++..+.... ....+++.+..+. +|.++.
T Consensus 443 ~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~ 521 (971)
T 2x1g_F 443 DTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVK 521 (971)
T ss_dssp HHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHH
T ss_pred HHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHH
Confidence 88888887766 34556666666665543 799999999999999987655322 1123455444444 356899
Q ss_pred HHHHHHHhHHHHHHhhCHH-HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH--HHHHhHHHHHHHhcCC--C
Q 007863 296 VRIAAAGKVTKICRILNPE-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKD--E 370 (587)
Q Consensus 296 vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d--~ 370 (587)
||..++.+++.++..+... .+...+++.+...+ | +.|+..|+.++..+++.++.. .+.+.++..+..++.. .
T Consensus 522 vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~ 598 (971)
T 2x1g_F 522 LLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRM 598 (971)
T ss_dssp HHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCC
Confidence 9999999999999987643 45577788877777 3 679999999999998766532 2445555666666665 3
Q ss_pred ChHHHHHHHHHhHHhhhhhchhhH---hhhhHHHH----HHHhcCC--CcHHHHHHHHHHHHHH---HhhChh-------
Q 007863 371 FPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAI----VELAEDR--HWRVRLAIIEYIPLLA---SQLGVG------- 431 (587)
Q Consensus 371 ~~~vr~~a~~~l~~i~~~~~~~~~---~~~~~~~l----~~~~~~~--~~~vr~~~~~~l~~l~---~~~~~~------- 431 (587)
+...+..+..+++.++..++.+.. ...+++.+ ....+.. +...+......++.++ ..++..
T Consensus 599 ~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~ 678 (971)
T 2x1g_F 599 KNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATD 678 (971)
T ss_dssp CHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCccccc
Confidence 578999999999999877653221 12333333 2333332 3334444445544444 333321
Q ss_pred --------hHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCccHHHHHHHHHH
Q 007863 432 --------FFDDKLGALCMQWLKD--KVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRMTILQAI 499 (587)
Q Consensus 432 --------~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~~~~r~~a~~~l 499 (587)
.+.+.++|.+...+.+ .+..+.+.++.+++.++..+|.++ +.+.+++.+...+..... ..++..+
T Consensus 679 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~ 755 (971)
T 2x1g_F 679 QPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---APTLEIS 755 (971)
T ss_dssp -----CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---HHHHHHH
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---hHHHHHH
Confidence 1234577777777643 367999999999999999887663 334455555544444322 3578888
Q ss_pred HHhhcccChH--------HHHHhHHHHHHhhcCC-------CCccHHHHHHHHHHHHHhhhchHHH-----HHhHHHHHH
Q 007863 500 SLLAPVMGSE--------ITCSQLLPVVINASKD-------RVPNIKFNVAKVLQSLIPIVDQSVV-----EKSIRPCLV 559 (587)
Q Consensus 500 ~~l~~~~~~~--------~~~~~~l~~l~~~l~d-------~~~~vR~~a~~~l~~l~~~~~~~~~-----~~~i~~~l~ 559 (587)
+.+...+|.+ .+...+...++..+.. ..++++......+..+........+ ...+++...
T Consensus 756 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~ 835 (971)
T 2x1g_F 756 KTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQ 835 (971)
T ss_dssp HHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHH
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHH
Confidence 8888877763 1223333333333333 3788999999999999876554322 345555555
Q ss_pred HhcCCCCccHHHHHHHHHHHHH
Q 007863 560 ELSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 560 ~l~~d~~~~Vr~~a~~al~~l~ 581 (587)
..+.-+++.....+...+..+.
T Consensus 836 ~~l~~~~~~~~~s~~~fl~~~i 857 (971)
T 2x1g_F 836 RGMTLPESGAIRNSIQFLTHFV 857 (971)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHH
Confidence 5445566666666666665543
No 43
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.72 E-value=1.7e-13 Score=150.14 Aligned_cols=565 Identities=12% Similarity=0.081 Sum_probs=341.8
Q ss_pred cccHHHHHHH-hcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccC----cCCcc
Q 007863 8 LYPIAVLIDE-LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGLE 82 (587)
Q Consensus 8 ~~~~~~l~~~-l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~----~~~~~ 82 (587)
+..+..++.. ..++|++.|..|.+.|..+-+ . +..|..+..++.. +.+.++|..++..|.+.... ++.++
T Consensus 23 ~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~--~-p~~~~~~~~lL~~--~~~~~vr~~aa~~L~~~i~~~w~~l~~~~ 97 (963)
T 2x19_B 23 VENVEKALHQLYYDPNIENKNLAQKWLMQAQV--S-PQAWHFSWQLLQP--DKVPEIQYFGASALHIKISRYWSDIPTDQ 97 (963)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--S-TTHHHHHHHHTST--TSCHHHHHHHHHHHHHHHHHCGGGSCGGG
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc--C-HHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHhCHHhCCHHH
Confidence 3446677777 446899999999999877643 2 2345555555543 45678999988888765432 22222
Q ss_pred ---hHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCC-----CCcchhhHHhhhhhhcc
Q 007863 83 ---YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGE-----WFTARVSSCGLFHVAYP 154 (587)
Q Consensus 83 ---~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~-----~~~~r~~a~~l~~~~~~ 154 (587)
....+++.+.+.. +..+.+|.+.+.++..+++...++. ++.+++.+.+...++ +...+..+..++..+.+
T Consensus 98 ~~~ir~~ll~~l~~~~-~~~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~e 175 (963)
T 2x19_B 98 YESLKAQLFTQITRFA-SGSKIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPE 175 (963)
T ss_dssp HHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHH
Confidence 2234444444322 2358999999999999999865555 456777777766541 22234455555544432
Q ss_pred ----C-C--------C---HHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHhcccCc
Q 007863 155 ----S-A--------P---EALKTELRTIYRQLCQDDM--PMVRRSAATNLGKFAATVEAA-HLKSEIMSIFEELTQDDQ 215 (587)
Q Consensus 155 ----~-~--------~---~~~~~~l~~~l~~l~~~~~--~~vR~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~l~~d~~ 215 (587)
. . . ....+.+++++...+.+.+ ..++..+++++...+. ++.. .....+++.+.+.+. +
T Consensus 176 e~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~ 252 (963)
T 2x19_B 176 EFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ--D 252 (963)
T ss_dssp HHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--S
T ss_pred HHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--C
Confidence 1 0 0 1245667777777776543 2488888888876655 3321 112566777766664 4
Q ss_pred hhHHHHHHHHHHHHhcccChhh---hhhchHHHHHH-------hcCCCchHHHHHHHHHHHHHHHHhCCC--------Cc
Q 007863 216 DSVRLLAVEGCGALGKLLEPQD---CVAHILPVIVN-------FSQDKSWRVRYMVANQLYELCEAVGPE--------PT 277 (587)
Q Consensus 216 ~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~-------~~~d~~~~vR~~a~~~l~~l~~~~~~~--------~~ 277 (587)
+.+|..|++++..+...-.... ....+++.+.. ...+.+.......++.+..++...... ..
T Consensus 253 ~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~ 332 (963)
T 2x19_B 253 SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQS 332 (963)
T ss_dssp TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHH
Confidence 7789999999999887533211 11222232222 122333344555567666665432110 01
Q ss_pred ccchHHHHHHhcCC-----ChHHHHHHHHHhHHHHHHhhC-------HH------HHHHhHHHHHhHhcCCC--------
Q 007863 278 RSDVVPAYVRLLRD-----NEAEVRIAAAGKVTKICRILN-------PE------LAIQHILPCVKELSSDS-------- 331 (587)
Q Consensus 278 ~~~l~~~l~~~l~d-----~~~~vr~~a~~~l~~l~~~~~-------~~------~~~~~~~~~l~~~~~d~-------- 331 (587)
...+++.+.....+ .++.++..++..+..+++... +. .+...+++.+...+..+
T Consensus 333 ~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~ 412 (963)
T 2x19_B 333 FLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFW 412 (963)
T ss_dssp HHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCC
Confidence 12344555554443 345667777777666666321 11 12233444433332211
Q ss_pred ------c-HHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhc----CCCChHHHHHHHHHhHHhhhhhchh--hHhhhh
Q 007863 332 ------S-QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL----KDEFPDVRLNIISKLDQVNQVIGID--LLSQSL 398 (587)
Q Consensus 332 ------~-~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~ 398 (587)
. ...|..+...+..++...+. ...+.+.+.+...+ .+.+...+.+++.+++.+++....+ .+...+
T Consensus 413 ~~de~~~~~~~r~~~~~~L~~~~~~~~~-~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l 491 (963)
T 2x19_B 413 SSDEKEQFRIYRVDISDTLMYVYEMLGA-ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGL 491 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHccH-HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHH
Confidence 1 13467777788777766663 34556666776666 6678899999999999999876542 222334
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhc
Q 007863 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQH 475 (587)
Q Consensus 399 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ 475 (587)
++.+.. +.++++.+|..++..++.+++.+... .+.+.+++.+...+.+ +.|+..|+.++..+++.++... +.+.
T Consensus 492 ~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~ 568 (963)
T 2x19_B 492 IGLIPR-ISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAAN 568 (963)
T ss_dssp HHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHH
T ss_pred HHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 443322 23468899999999999998866422 3455678888888876 7899999999999998766542 3455
Q ss_pred hHHHHHhhhcC--CccHHHHHHHHHHHHhhcccChH---HHHHhHHHHHHhhc----CC-CCccHHH---HHHHHHHHHH
Q 007863 476 IVPQVLEMINN--PHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINAS----KD-RVPNIKF---NVAKVLQSLI 542 (587)
Q Consensus 476 ~~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l----~d-~~~~vR~---~a~~~l~~l~ 542 (587)
++..+..++.. -+...|...+.+++.++...+.+ .+...+++.+...+ +. .++..|. ..+.+++.++
T Consensus 569 il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~ 648 (963)
T 2x19_B 569 IVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLF 648 (963)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 66666666654 24678999999999998877622 24555555554433 22 2444444 5566666666
Q ss_pred hhhch------------------------HHHHHhHHHHHHHhcC--CCCccHHHHHHHHHHHHHHHhhc
Q 007863 543 PIVDQ------------------------SVVEKSIRPCLVELSE--DPDVDVRFFATQALQSKDQVMMS 586 (587)
Q Consensus 543 ~~~~~------------------------~~~~~~i~~~l~~l~~--d~~~~Vr~~a~~al~~l~~~~~~ 586 (587)
..++. ..+.+.++|.+.+++. -.+..+...+..+++.+...+|.
T Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~ 718 (963)
T 2x19_B 649 TTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLD 718 (963)
T ss_dssp HHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSS
T ss_pred HHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcc
Confidence 65431 1345667777766542 23568999999999988877663
No 44
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.71 E-value=1.4e-12 Score=142.94 Aligned_cols=555 Identities=13% Similarity=0.073 Sum_probs=324.2
Q ss_pred ccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCC------chHHHHHHHHHhccccc----C-c--------CC-
Q 007863 21 DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDD------DDEVLLAMAEELGVFIP----Y-V--------GG- 80 (587)
Q Consensus 21 ~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~------~~~v~~~~~~~l~~~~~----~-~--------~~- 80 (587)
.++.+|......+..+++...|+. |+.+++.+.+.... ++..+..+...+..+.+ . . ..
T Consensus 115 ~~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~ 193 (963)
T 2x19_B 115 GSKIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTS 193 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CC
T ss_pred CCHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHH
Confidence 468899999999999998877754 88888887764432 32233333333222211 1 0 00
Q ss_pred -cchHhhhhhHHHhhhcCch--hHHHHHHHHHHHHHHhhcChhh-HhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCC
Q 007863 81 -LEYANVLLPPLETLCTVEE--TCVRDKAVESLCRIGSQMREQD-VVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSA 156 (587)
Q Consensus 81 -~~~~~~l~~~l~~l~~~~~--~~vr~~a~~~l~~l~~~~~~~~-~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~ 156 (587)
....+.+++++..++.+.+ ..++..+++++..... ++... ....+++.+.+... .+..+..++..+..+....
T Consensus 194 l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~ 270 (963)
T 2x19_B 194 LAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQP 270 (963)
T ss_dssp SGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHccc
Confidence 1234566677766665432 2478888888876555 33211 12456676666553 4566777877777766543
Q ss_pred C-H---HHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHhccc----
Q 007863 157 P-E---ALKTELRTIYRQL-------CQDDMPMVRRSAATNLGKFAATVEA--------AHLKSEIMSIFEELTQD---- 213 (587)
Q Consensus 157 ~-~---~~~~~l~~~l~~l-------~~~~~~~vR~~a~~~l~~l~~~~~~--------~~~~~~i~~~l~~l~~d---- 213 (587)
. + .....+++.+... ..+.+.......++.+..++..... ......+++.+.....+
T Consensus 271 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~ 350 (963)
T 2x19_B 271 DAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHY 350 (963)
T ss_dssp TGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCT
T ss_pred ccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCC
Confidence 2 1 2333333333321 2334556666777777776654321 12223455555555553
Q ss_pred -CchhHHHHHHHHHHHHhcccC-------h------hhhhhchHHHHHHhcCCC--------------ch-HHHHHHHHH
Q 007863 214 -DQDSVRLLAVEGCGALGKLLE-------P------QDCVAHILPVIVNFSQDK--------------SW-RVRYMVANQ 264 (587)
Q Consensus 214 -~~~~vr~~a~~~l~~l~~~~~-------~------~~~~~~l~~~l~~~~~d~--------------~~-~vR~~a~~~ 264 (587)
.++.++..+...+..+.+... + ......+++.+...+..+ ++ ..|..+..+
T Consensus 351 ~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~ 430 (963)
T 2x19_B 351 PVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDT 430 (963)
T ss_dssp TTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHH
Confidence 355667777777776665321 0 112223344433333211 11 347778888
Q ss_pred HHHHHHHhCCCCcccchHHHHHHhc----CCChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHH
Q 007863 265 LYELCEAVGPEPTRSDVVPAYVRLL----RDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSA 338 (587)
Q Consensus 265 l~~l~~~~~~~~~~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~ 338 (587)
+..++...+.. ..+.+.+.+...+ .+.+|..|++++.+++.+++.+... .+...+++.+..+. ++++.||..
T Consensus 431 L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~-~~~~~vr~~ 508 (963)
T 2x19_B 431 LMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRIS-ISNVQLADT 508 (963)
T ss_dssp HHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSC-CCSHHHHHH
T ss_pred HHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCC-CCcHHHHHH
Confidence 88877766522 2233455555555 6678999999999999999876542 34456666555444 458889999
Q ss_pred HHHHHHhhhhhhch-HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh--hHhhhhHHHHHHHhcC--CCcHH
Q 007863 339 LATVIMGMAPILGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAED--RHWRV 413 (587)
Q Consensus 339 a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~~--~~~~v 413 (587)
++.+++.++..+.. ..+.+.+++.+...+.+ +.|+..|+.++..++...+.. .+.+.++..+..++.. -+...
T Consensus 509 ~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~ 586 (963)
T 2x19_B 509 VMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQ 586 (963)
T ss_dssp HHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHH
Confidence 99999999987653 35677888888888866 899999999999999765532 2234555555566654 35678
Q ss_pred HHHHHHHHHHHHHhhChhhHH---HHHHHHHHHHc----CC-CchHHHH---HHHHHHHHHHHHhChh------------
Q 007863 414 RLAIIEYIPLLASQLGVGFFD---DKLGALCMQWL----KD-KVYSIRD---AAANNVKRLAEEFGPD------------ 470 (587)
Q Consensus 414 r~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l----~d-~~~~vr~---~a~~~l~~l~~~~~~~------------ 470 (587)
|..++++++.++...+.+... +.+++.+...+ .. .+.+.+. ..+.+++.+++.++..
T Consensus 587 ~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~ 666 (963)
T 2x19_B 587 CMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELR 666 (963)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccc
Confidence 899999999988766532222 33443333332 22 2344443 5566677777765521
Q ss_pred ------------hhhhchHHHHHhhhc--CCccHHHHHHHHHHHHhhcccChH---------------------------
Q 007863 471 ------------WAMQHIVPQVLEMIN--NPHYLYRMTILQAISLLAPVMGSE--------------------------- 509 (587)
Q Consensus 471 ------------~~~~~~~~~l~~~l~--~~~~~~r~~a~~~l~~l~~~~~~~--------------------------- 509 (587)
.+.+.++|.+...+. ..+..+++.++.+++.+...+|..
T Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l 746 (963)
T 2x19_B 667 KLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDL 746 (963)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccHHHHH
Confidence 023445555444432 123456666666666544333211
Q ss_pred ---------------HHH----HhHHHHHHhhcC-C--CCccHHHHHHHHHHHHHhhhchHHH-----HHhHHHHHHHhc
Q 007863 510 ---------------ITC----SQLLPVVINASK-D--RVPNIKFNVAKVLQSLIPIVDQSVV-----EKSIRPCLVELS 562 (587)
Q Consensus 510 ---------------~~~----~~~l~~l~~~l~-d--~~~~vR~~a~~~l~~l~~~~~~~~~-----~~~i~~~l~~l~ 562 (587)
... +.++..++..+. + ..+++|..+...+..+........+ ...+++.+...+
T Consensus 747 ~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 826 (963)
T 2x19_B 747 TRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLAL 826 (963)
T ss_dssp HHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHc
Confidence 001 111111121221 2 3578888888888888766544321 455667777777
Q ss_pred CCCCccHHHHHHHHHHHHHHH
Q 007863 563 EDPDVDVRFFATQALQSKDQV 583 (587)
Q Consensus 563 ~d~~~~Vr~~a~~al~~l~~~ 583 (587)
..+++++...+.+.+..+.+.
T Consensus 827 ~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 827 KFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp TCSCHHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHHHhc
Confidence 788888888888888777654
No 45
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.70 E-value=6.2e-16 Score=139.66 Aligned_cols=186 Identities=16% Similarity=0.195 Sum_probs=143.5
Q ss_pred hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHhChhh
Q 007863 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDW 471 (587)
Q Consensus 396 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~ 471 (587)
..+-+.+.+.+.+.+|+.|..++..+..+....+. .. ...+++.+...+. |.+..||..|+.+++.++..+|..+
T Consensus 14 ~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~ 92 (242)
T 2qk2_A 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF 92 (242)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred ccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH
Confidence 34445566777888888888888888888765321 12 2467777888884 8888888888888888888877654
Q ss_pred --hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch--
Q 007863 472 --AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-- 547 (587)
Q Consensus 472 --~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-- 547 (587)
+...++|.+.+.+.|++..+|.++..++..+....+ .+.++|.+...++++++.+|..++.+++.+....++
T Consensus 93 ~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 93 SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 446788888888888888888888888888887654 356778888888888888888888888887765542
Q ss_pred --HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863 548 --SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 586 (587)
Q Consensus 548 --~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~~ 586 (587)
..+...++|.|.++++|++++||..|..+++.++..+|+
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 244567888888888888888888888888888888774
No 46
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.69 E-value=1.4e-15 Score=137.37 Aligned_cols=196 Identities=15% Similarity=0.144 Sum_probs=111.9
Q ss_pred hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC--CCcccchHHHHHHhc-CCChHHHHHHHHHhHHHHHHhhC
Q 007863 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILN 312 (587)
Q Consensus 236 ~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~ 312 (587)
.+....+.+.+.+.++|.+|..|..++..|..++...+. ......+++.+...+ +|.+..||..|+.+++.++..++
T Consensus 10 ~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~ 89 (242)
T 2qk2_A 10 VDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA 89 (242)
T ss_dssp BCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG
T ss_pred ccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh
Confidence 334445555566677788888888888888887765332 111235666777777 37777777777777777776665
Q ss_pred HH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhc
Q 007863 313 PE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 390 (587)
Q Consensus 313 ~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~ 390 (587)
+. .+...++|.+...+.|++..||.++..++..++...+ .+.++|.+...+++.++.+|..++..++.+....+
T Consensus 90 ~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 90 KRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp GGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 43 3445566666666666666666666666665554332 12334444444444444444444444444433322
Q ss_pred hhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh
Q 007863 391 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 470 (587)
Q Consensus 391 ~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 470 (587)
++. . ...+.+.++|.+..++.|++++||.+|..+++.++..+|.+
T Consensus 166 ~~~----------------------------------~-~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 166 PTA----------------------------------L-NKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp GGG----------------------------------C-CHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCC----------------------------------c-cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHH
Confidence 110 0 01233455666666666666666666666666666666654
No 47
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.68 E-value=2.4e-15 Score=132.92 Aligned_cols=187 Identities=19% Similarity=0.204 Sum_probs=121.8
Q ss_pred hchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHh
Q 007863 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQH 319 (587)
Q Consensus 240 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 319 (587)
+..++.+...+.|+++.+|..++..|+.+. ....++.+..+++|+++.||..++.+|+.+.. +.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~ 81 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER 81 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GG
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence 445666666777777777777777777643 13466777777777777777777777776642 33
Q ss_pred HHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhH
Q 007863 320 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399 (587)
Q Consensus 320 ~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~ 399 (587)
.++.+.++++|+++.||..++.+++.+.. +..+|.+..+++|+++.||..++.+|+.+.. +..+
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~ 145 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV 145 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHH
Confidence 45666666777777777777777776642 2345666667777777777777777776642 2456
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Q 007863 400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (587)
Q Consensus 400 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 466 (587)
|.+..++.|+++.+|..++..++.+.. +...+.+...+.|+++.||..|..+|+.+...
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 666666777777777777777665532 33555666666677777777777777766543
No 48
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.67 E-value=4.6e-15 Score=129.96 Aligned_cols=183 Identities=22% Similarity=0.249 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccc
Q 007863 201 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD 280 (587)
Q Consensus 201 ~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ 280 (587)
+...+.+.++++|+++.+|..|+..|+.+.. +..++.+...+.|+++.+|..++..|+.+. ...
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------~~~ 76 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------DER 76 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGG
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------CHH
Confidence 3344445555555555555555555554432 234444555555555555555555555442 123
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHH
Q 007863 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360 (587)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 360 (587)
.++.+..+++|+++.||..|+.+|+.+.. +..++.+.++++|+++.||..++.+++.+.. +..+
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~ 140 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV 140 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence 45555555555555555555555555432 2234445555555555555555555555531 2234
Q ss_pred HHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHH
Q 007863 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423 (587)
Q Consensus 361 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~ 423 (587)
+.+..+++|+++.||..++.+|+.+.. +..++.+..++.|+++.+|..+.+.+..
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 455555555555555555555555421 2344445555555555555555555443
No 49
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.67 E-value=3.7e-15 Score=131.73 Aligned_cols=185 Identities=22% Similarity=0.234 Sum_probs=131.8
Q ss_pred HHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchH
Q 007863 203 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV 282 (587)
Q Consensus 203 i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~ 282 (587)
.++.+..+++|+++.+|..++..|+.+.. +..++.+...+.|+++.+|..++.+|+.+. ....+
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------~~~~~ 83 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------DERAV 83 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------CGGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------CHHHH
Confidence 44555566777778888888887776543 356677777777888888888888877653 23467
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHH
Q 007863 283 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI 362 (587)
Q Consensus 283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~ 362 (587)
+.+..+++|+++.||..++.+|+.++. +..++.+.++++|+++.||..++.+++.+.. +..++.
T Consensus 84 ~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~ 147 (211)
T 3ltm_A 84 EPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEP 147 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHHH
Confidence 777778888888888888888877743 3456777777788888888888888877752 234567
Q ss_pred HHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 007863 363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (587)
Q Consensus 363 l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 427 (587)
+..+++|+++.||..++.+|+.+.. +..++.+..+++|+++.+|..+.+.+..+...
T Consensus 148 L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 148 LIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 7777788888888888888887743 35677777777788888888888877766544
No 50
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.67 E-value=4.1e-15 Score=130.30 Aligned_cols=186 Identities=19% Similarity=0.207 Sum_probs=142.2
Q ss_pred hhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHH
Q 007863 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQ 318 (587)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 318 (587)
.+...+.+.+.++|+++.+|..|+..|+.+. ....++.+.++++|+++.+|..++.+|+.+.. +
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~ 75 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRAAADALGQIGD--------E 75 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------G
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------H
Confidence 4556777888888888999998888888653 23567888888888888888888888887743 3
Q ss_pred hHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhh
Q 007863 319 HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 398 (587)
Q Consensus 319 ~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~ 398 (587)
..++.+.++++|+++.||..++.+++.+.. +..++.+..+++|+++.||..++.+|+.+.. +..
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~ 139 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERA 139 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHH
Confidence 456777778888888888888888887752 2355677778888888888888888888753 356
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 007863 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA 464 (587)
Q Consensus 399 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 464 (587)
++.+..++.|+++.+|..++..++.+.. +...+.+...+.|+++.||..|..+|+.+-
T Consensus 140 ~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 140 VEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 7777888888888888888888877632 345666777778888888888888887653
No 51
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.64 E-value=1.1e-11 Score=136.33 Aligned_cols=510 Identities=9% Similarity=0.043 Sum_probs=306.3
Q ss_pred CcccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccC----cCCcc
Q 007863 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGLE 82 (587)
Q Consensus 7 ~~~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~----~~~~~ 82 (587)
++..+..++..+.++++..|..|.+.|...-+ .| ..+..+...+.. +.+.++|..++..|.+.... ++.+.
T Consensus 14 ~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~--~p-~~~~~l~~iL~~--s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~ 88 (1049)
T 3m1i_C 14 DIALLDQVVSTFYQGSGVQQKQAQEILTKFQD--NP-DAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDH 88 (1049)
T ss_dssp CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--ST-TGGGGHHHHHHH--CSCHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred cHHHHHHHHHHHhCCChHHHHHHHHHHHHHHh--Cc-hHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhhCccCCHHH
Confidence 34457788888888888899999999977633 22 345555555543 34778998888888765432 22111
Q ss_pred ---hHhhhhhHHHhhhcCc-----hhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhcc
Q 007863 83 ---YANVLLPPLETLCTVE-----ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYP 154 (587)
Q Consensus 83 ---~~~~l~~~l~~l~~~~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~ 154 (587)
....++..+.....++ ++.+|.+.+.++..+++.-.++. ++.+++.+.+.... ....+..+..++..+
T Consensus 89 ~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~-Wp~ll~~L~~~~~~-~~~~~~~~l~~L~~l-- 164 (1049)
T 3m1i_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQN-WPEFIPELIGSSSS-SVNVCENNMIVLKLL-- 164 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHHTT-CHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCccc-chHHHHHHHHHHcc-ChHHHHHHHHHHHHH--
Confidence 1233333333332222 47899999999999998855543 34566666665542 112222223332221
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccc-CchhHHHHHHHHHHHHhccc
Q 007863 155 SAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLL 233 (587)
Q Consensus 155 ~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~ 233 (587)
.+.+.....+.-..-|..-.+ ..+.. ..+.+++.+...+++ .+..++..+++++..+....
T Consensus 165 ----------~eev~~~~~~~~~~~r~~~lk--~~l~~------~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi 226 (1049)
T 3m1i_C 165 ----------SEEVFDFSAEQMTQAKALHLK--NSMSK------EFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWI 226 (1049)
T ss_dssp ----------HHHHHTSCTTTSCHHHHHHHH--HHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS
T ss_pred ----------HHHHHHhcchhhhhHHHHHHH--HHHHH------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhC
Confidence 111111111111111211111 01111 123344555544443 34678899999998877766
Q ss_pred Chhh-hhhchHHHHHH-hcCCCchHHHHHHHHHHHHHHHHhCCCC---cccc-------hHHHHHH--------------
Q 007863 234 EPQD-CVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEP---TRSD-------VVPAYVR-------------- 287 (587)
Q Consensus 234 ~~~~-~~~~l~~~l~~-~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~-------l~~~l~~-------------- 287 (587)
+... ..+.+++.+.+ ++ .++.+|..|+++|..++..--+.. .... ++..+..
T Consensus 227 ~~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~ 304 (1049)
T 3m1i_C 227 PYRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA 304 (1049)
T ss_dssp CTHHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred CHHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhc
Confidence 6422 33456666653 33 268899999999998876411111 0011 1221111
Q ss_pred hcCCChHHHHHHHHHhHHHHHHhhCH--------HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhh----c----
Q 007863 288 LLRDNEAEVRIAAAGKVTKICRILNP--------ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL----G---- 351 (587)
Q Consensus 288 ~l~d~~~~vr~~a~~~l~~l~~~~~~--------~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~----~---- 351 (587)
..+|.+.+.....++.+..++..... ......+++.+......++..++..++..+..++... .
T Consensus 305 ~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~ 384 (1049)
T 3m1i_C 305 NANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHI 384 (1049)
T ss_dssp HTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGG
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHH
Confidence 12455667766777777666543211 1233556777777777778899999998888877622 1
Q ss_pred hHHHHHhHHHHHHHhcCCC-------------------Ch---HHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhc--
Q 007863 352 KDATIEQLLPIFLSLLKDE-------------------FP---DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-- 407 (587)
Q Consensus 352 ~~~~~~~l~~~l~~~l~d~-------------------~~---~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~-- 407 (587)
...+...+++.+...+.-+ +. ..|..+...|..++... .....+.+.+.+...+.
T Consensus 385 ~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~-~~~~l~~v~~~l~~~l~~~ 463 (1049)
T 3m1i_C 385 YEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLN-VIDTEEIMISKLARQIDGS 463 (1049)
T ss_dssp GHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHhCCC
Confidence 1234455666666544211 10 34556666777776443 34444667777777665
Q ss_pred CCCcHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHHcC-----CCchHHHHHHHHHHHHHHHHhChh-hhhhchHH
Q 007863 408 DRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLK-----DKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVP 478 (587)
Q Consensus 408 ~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~ 478 (587)
..+|+.|.+++..++.++..++.. .+.+.+++.+..+.. |+.+.+|..++.+++.+.+.+... .+...+++
T Consensus 464 ~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~ 543 (1049)
T 3m1i_C 464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVIL 543 (1049)
T ss_dssp SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 478999999999999887665443 234556666655432 345667767889999887755432 24567888
Q ss_pred HHHhhhcCCccHHHHHHHHHHHHhhcccChH----------HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhc
Q 007863 479 QVLEMINNPHYLYRMTILQAISLLAPVMGSE----------ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 479 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~----------~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~ 546 (587)
.+++.+.+++..+|..|+.++..+++.++.. .+.+.++..+...+.+....-+....++++.++...+
T Consensus 544 ~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 8888888989999999999999999877654 3466777777777777666667888999999987766
No 52
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.63 E-value=7e-13 Score=131.80 Aligned_cols=344 Identities=15% Similarity=0.147 Sum_probs=239.7
Q ss_pred hhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH
Q 007863 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE 314 (587)
Q Consensus 238 ~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 314 (587)
+...-+|.+..++.+.+..++..|+.+|..++..-.. .......+|.|++++++.+.+++..|+.+|..++..-+.+
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 4455677888888888888888888888887742100 1112346899999999999999999999999987631122
Q ss_pred ----HHHHhHHHHHhHhcCC-CcHHHHHHHHHHHHhhhhhhc-hHHHHHhHHHHHHHhc------------------CCC
Q 007863 315 ----LAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPILG-KDATIEQLLPIFLSLL------------------KDE 370 (587)
Q Consensus 315 ----~~~~~~~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l------------------~d~ 370 (587)
......+|.+.+++.+ .+..++..++.+|..++..-. +..+....+|.+..++ ...
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~ 204 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIE 204 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCC
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccc
Confidence 2223467888888875 578889998888888876432 2223344567776654 123
Q ss_pred ChHHHHHHHHHhHHhhhhhc--hhhHh--hhhHHHHHHHhc------CCCcHHHHHHHHHHHHHHHhhCh----------
Q 007863 371 FPDVRLNIISKLDQVNQVIG--IDLLS--QSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQLGV---------- 430 (587)
Q Consensus 371 ~~~vr~~a~~~l~~i~~~~~--~~~~~--~~~~~~l~~~~~------~~~~~vr~~~~~~l~~l~~~~~~---------- 430 (587)
++.|+..++.+|..++..-. ...+. ..+++.+..++. +.+.+....++..|..++.....
T Consensus 205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 57999999999999875421 11111 244555655553 35667777787777766643210
Q ss_pred -----------------hh-HHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHhCh---h---hh-hhchHHHHHhhh
Q 007863 431 -----------------GF-FDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGP---D---WA-MQHIVPQVLEMI 484 (587)
Q Consensus 431 -----------------~~-~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~---~---~~-~~~~~~~l~~~l 484 (587)
+. +....++.++.+++ ..+..+++.|+.+|..++..-+. . .+ ....+|.|.+++
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL 364 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL 364 (584)
T ss_dssp -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence 00 12345677778875 45789999999999999742111 1 11 256799999999
Q ss_pred cCCccHHHHHHHHHHHHhhcccCh-HHHHHhHHHHHHhhcCCC--------CccHHHHHHHHHHHHHhhhch---HHHHH
Q 007863 485 NNPHYLYRMTILQAISLLAPVMGS-EITCSQLLPVVINASKDR--------VPNIKFNVAKVLQSLIPIVDQ---SVVEK 552 (587)
Q Consensus 485 ~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~~l~~l~~~l~d~--------~~~vR~~a~~~l~~l~~~~~~---~~~~~ 552 (587)
.+++..++..++.+|.+++..... ..+....+|.++.+|.+. +..++..++.+|++++..-.. .....
T Consensus 365 ~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~ 444 (584)
T 3l6x_A 365 TNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRET 444 (584)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence 999999999999999999975543 345678899999999876 357888999999988743211 24445
Q ss_pred hHHHHHHHhcCCC--CccHHHHHHHHHHHHH
Q 007863 553 SIRPCLVELSEDP--DVDVRFFATQALQSKD 581 (587)
Q Consensus 553 ~i~~~l~~l~~d~--~~~Vr~~a~~al~~l~ 581 (587)
..+|.|..++.+. .+.++..|..+|..+.
T Consensus 445 g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 445 QGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp THHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 7899999988775 7889999999999876
No 53
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.62 E-value=4.3e-11 Score=123.37 Aligned_cols=309 Identities=14% Similarity=0.064 Sum_probs=190.9
Q ss_pred HHHHHHhcC---CCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCCh--------HHHHHHHHHhHHHHHHhh
Q 007863 243 LPVIVNFSQ---DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE--------AEVRIAAAGKVTKICRIL 311 (587)
Q Consensus 243 ~~~l~~~~~---d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--------~~vr~~a~~~l~~l~~~~ 311 (587)
+..+.+.+. ..++.+|..|+-.+|-+....+ ...+..+...+.+.+ +.+|.+|+..||-+.-..
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~-----~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS 468 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG-----RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS 468 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT-----HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC
Confidence 444444443 4566777777777776544322 124455555554332 567777777777654433
Q ss_pred CHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch
Q 007863 312 NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 391 (587)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~ 391 (587)
+.+. +++.+...+.|.+..+|..++.+++.+.-.-+.....+.++..+ ..+.+..+|..++.+|+.+. +|.
T Consensus 469 ~~ee----v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~---~e~~~e~vrR~aalgLGll~--~g~ 539 (963)
T 4ady_A 469 ANIE----VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYS---QETQHGNITRGLAVGLALIN--YGR 539 (963)
T ss_dssp CCHH----HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH---HHCSCHHHHHHHHHHHHHHT--TTC
T ss_pred CCHH----HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH---hccCcHHHHHHHHHHHHhhh--CCC
Confidence 3333 34445555555566677777777776643333333333333333 34566778888888887663 333
Q ss_pred hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh
Q 007863 392 DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW 471 (587)
Q Consensus 392 ~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 471 (587)
++. +-+.+..+..+.+|-+|..++-+++.-....|.... +-.++..+..|.+..||..|+.+|+.+. +|.
T Consensus 540 ~e~---~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---Iq~LL~~~~~d~~d~VRraAViaLGlI~--~g~-- 609 (963)
T 4ady_A 540 QEL---ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---VKRLLHVAVSDSNDDVRRAAVIALGFVL--LRD-- 609 (963)
T ss_dssp GGG---GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---HHHHHHHHHHCSCHHHHHHHHHHHHHHT--SSS--
T ss_pred hHH---HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHhccCCcHHHHHHHHHHHHhhc--cCC--
Confidence 321 222223344578888888887777655444454332 2334444456788889999999988765 232
Q ss_pred hhhchHHHHHh-hhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--
Q 007863 472 AMQHIVPQVLE-MINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-- 548 (587)
Q Consensus 472 ~~~~~~~~l~~-~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~-- 548 (587)
+..+|.++. +..+.++.+|.++..+++.++..-+. ..++..+..+.+|++..||.+|+.+|+.+...-.+.
T Consensus 610 --~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~ 683 (963)
T 4ady_A 610 --YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLN 683 (963)
T ss_dssp --CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTC
T ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccc
Confidence 234566665 45567889999999999988754443 356667778889999999999999999987543222
Q ss_pred HHHHhHHHHHHHhcCC--CCccHHHHHHHHHHHHH
Q 007863 549 VVEKSIRPCLVELSED--PDVDVRFFATQALQSKD 581 (587)
Q Consensus 549 ~~~~~i~~~l~~l~~d--~~~~Vr~~a~~al~~l~ 581 (587)
+....++..|.+...| .|+.+|..|.-|.+-+.
T Consensus 684 ~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 684 PQVADINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp TTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 1334556666665555 56778888888888765
No 54
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.61 E-value=6.4e-12 Score=138.16 Aligned_cols=488 Identities=8% Similarity=0.020 Sum_probs=298.5
Q ss_pred hhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhc----cCCCHHHH
Q 007863 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAY----PSAPEALK 161 (587)
Q Consensus 86 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~----~~~~~~~~ 161 (587)
.+...+..+. +++...|+.|-+.|..+-+.- .....+..++.. +.+..+|..|+..+.... ...+++.+
T Consensus 17 ~l~~~l~~~~-~p~~~~r~~Ae~~L~~~~~~p---~~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~ 89 (1049)
T 3m1i_C 17 LLDQVVSTFY-QGSGVQQKQAQEILTKFQDNP---DAWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHR 89 (1049)
T ss_dssp HHHHHHHHHH-HCCHHHHHHHHHHHHHHHHST---TGGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGSCHHHH
T ss_pred HHHHHHHHHh-CCChHHHHHHHHHHHHHHhCc---hHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccCCHHHH
Confidence 3444444433 334457888887887764431 223334444322 345667777776665542 33455544
Q ss_pred HH----HHHHHHHhcCCC-----CHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcc
Q 007863 162 TE----LRTIYRQLCQDD-----MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL 232 (587)
Q Consensus 162 ~~----l~~~l~~l~~~~-----~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 232 (587)
.. +++.+.....++ ++.+|...+.++..++..--. ..++.+++.+...++ .++..+..+...|..+.+.
T Consensus 90 ~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~ee 167 (1049)
T 3m1i_C 90 IGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEE 167 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHH
Confidence 44 444444333222 478999999999999887433 456777777777776 4455677777777777654
Q ss_pred cCh---h---------------hhhhchHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhCCCC-cccchHHHHHH-hcCC
Q 007863 233 LEP---Q---------------DCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYVR-LLRD 291 (587)
Q Consensus 233 ~~~---~---------------~~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~-~l~d 291 (587)
+.. + ...+.+++.+...+.+ .+..++..+++++..+....+... ..+.+++.+.+ ++.
T Consensus 168 v~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~- 246 (1049)
T 3m1i_C 168 VFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT- 246 (1049)
T ss_dssp HHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH-
T ss_pred HHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC-
Confidence 321 0 0122344444554443 467899999999887765443211 12346666663 332
Q ss_pred ChHHHHHHHHHhHHHHHHhh-CHH-----HHH----HhHHHHHhH--------------hcCCCcHHHHHHHHHHHHhhh
Q 007863 292 NEAEVRIAAAGKVTKICRIL-NPE-----LAI----QHILPCVKE--------------LSSDSSQHVRSALATVIMGMA 347 (587)
Q Consensus 292 ~~~~vr~~a~~~l~~l~~~~-~~~-----~~~----~~~~~~l~~--------------~~~d~~~~vr~~a~~~l~~l~ 347 (587)
++++|..|+.+|..+...- ++. ... ..++..+.. ...+.++.+....++.+..++
T Consensus 247 -~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~ 325 (1049)
T 3m1i_C 247 -SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYL 325 (1049)
T ss_dssp -SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHH
T ss_pred -CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence 5789999999999988652 221 111 112222211 113445666667777776655
Q ss_pred hhhc--------hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhh----c-hh---hHhhhhHHHHHHHhc---C
Q 007863 348 PILG--------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----G-ID---LLSQSLLPAIVELAE---D 408 (587)
Q Consensus 348 ~~~~--------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~----~-~~---~~~~~~~~~l~~~~~---~ 408 (587)
.... .......+++.+......++.+++..++..+..+++.+ . .. .+...+++.+...+. |
T Consensus 326 ~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed 405 (1049)
T 3m1i_C 326 ARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEE 405 (1049)
T ss_dssp HHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTT
T ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 4321 12234456777777777778899999988887777632 1 11 122334444444331 1
Q ss_pred CC-------------------cHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcC--CCchHHHHHHHHHHHHHHHHh
Q 007863 409 RH-------------------WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK--DKVYSIRDAAANNVKRLAEEF 467 (587)
Q Consensus 409 ~~-------------------~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~ 467 (587)
.. |..|..+...+..++.. +.....+.+.+.+.+.+. ..+|..|++++.+++.+...+
T Consensus 406 ~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~-~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~ 484 (1049)
T 3m1i_C 406 VLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHL-NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTM 484 (1049)
T ss_dssp CCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSS
T ss_pred eeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhccc
Confidence 11 24466677777777644 344445666677766665 478999999999999887655
Q ss_pred Chh---hhhhchHHHHHhhhc-----CCccHHHHHHHHHHHHhhcccCh-HHHHHhHHHHHHhhcCCCCccHHHHHHHHH
Q 007863 468 GPD---WAMQHIVPQVLEMIN-----NPHYLYRMTILQAISLLAPVMGS-EITCSQLLPVVINASKDRVPNIKFNVAKVL 538 (587)
Q Consensus 468 ~~~---~~~~~~~~~l~~~l~-----~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l 538 (587)
+.. .+...+++.+..+.. ++...+|..++++++.+++.+.. ..+...+++.++..+.|+++.||..|+.++
T Consensus 485 ~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al 564 (1049)
T 3m1i_C 485 SEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTF 564 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 543 123445555544321 34566676788999988875443 246788899999999999999999999999
Q ss_pred HHHHhhhchH----------HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhh
Q 007863 539 QSLIPIVDQS----------VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 585 (587)
Q Consensus 539 ~~l~~~~~~~----------~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~ 585 (587)
..++...+.. ++.+.++..+..+..+.+.+-+....+|++.+.+..+
T Consensus 565 ~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 565 IKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 9999876543 3456666666677777666667788888888876654
No 55
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.60 E-value=3.4e-13 Score=133.49 Aligned_cols=147 Identities=12% Similarity=0.061 Sum_probs=109.2
Q ss_pred HHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHHhCh-------hhh-hhchHHHHHhhhcCCccHHHHHHHHHHHHhhcc
Q 007863 435 DKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGP-------DWA-MQHIVPQVLEMINNPHYLYRMTILQAISLLAPV 505 (587)
Q Consensus 435 ~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~-------~~~-~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~ 505 (587)
...++.+..++.+ .++.+++.|+.+|..++..-+. ..+ ....+|.+.+++.+++..+|..|++++.+++..
T Consensus 282 ~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 3456666666654 4689999999999999753222 112 256899999999999999999999999999874
Q ss_pred cCh-HHHHHhHHHHHHhhcCCCCc------cHHHHHHHHHHHHHhhhchH---HHHHhHHHHHHHhcCCC-CccHHHHHH
Q 007863 506 MGS-EITCSQLLPVVINASKDRVP------NIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDP-DVDVRFFAT 574 (587)
Q Consensus 506 ~~~-~~~~~~~l~~l~~~l~d~~~------~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~-~~~Vr~~a~ 574 (587)
-.. ..+....+|.++.++.+.++ .+...++.+|+.+...-+.. ......++.|.+++... +.+++..|.
T Consensus 362 ~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~ 441 (457)
T 1xm9_A 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR 441 (457)
T ss_dssp GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHH
Confidence 322 22456788999999988654 57778899999887543221 22346789999988877 889999999
Q ss_pred HHHHHHH
Q 007863 575 QALQSKD 581 (587)
Q Consensus 575 ~al~~l~ 581 (587)
..|..+.
T Consensus 442 ~~L~~~~ 448 (457)
T 1xm9_A 442 LLLSDMW 448 (457)
T ss_dssp HHHHTTS
T ss_pred HHHHHHH
Confidence 9987654
No 56
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.60 E-value=3.1e-12 Score=129.02 Aligned_cols=480 Identities=9% Similarity=0.061 Sum_probs=300.1
Q ss_pred cCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhh----cCCCCcchhhHHhhhhhhccCCCHH-----HHHHHHH
Q 007863 96 TVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLA----AGEWFTARVSSCGLFHVAYPSAPEA-----LKTELRT 166 (587)
Q Consensus 96 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~----~~~~~~~r~~a~~l~~~~~~~~~~~-----~~~~l~~ 166 (587)
....+.+|..+.-.+.++.+..+ +.+...+..++..+. .+-.......++.++..+++..++- ..+.+.+
T Consensus 180 ~~~~~~~~~~~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~ 258 (778)
T 3opb_A 180 RISEDEVKSMMLIIFAELQSSFQ-KDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSK 258 (778)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHH
T ss_pred ccChhhhHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHH
Confidence 35677888888888877776655 455666666666544 2212233444556666666665432 1234455
Q ss_pred HHHHhc-CCCCHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh-hhhhhchH
Q 007863 167 IYRQLC-QDDMPMVRRSAATNLGKFAATVE-AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QDCVAHIL 243 (587)
Q Consensus 167 ~l~~l~-~~~~~~vR~~a~~~l~~l~~~~~-~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~ 243 (587)
.+.... +..+..+..++.+.|...+..-. .+.+.....+.+.+.+++ +.+|..|.-+|.+++..-.. ..-...+.
T Consensus 259 ~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La 336 (778)
T 3opb_A 259 LFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLS 336 (778)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHH
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHH
Confidence 555544 44566777777777766543211 133445566778778765 57888899999888865433 22234578
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHHhC--CCC-cccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHHHHHHh
Q 007863 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEP-TRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPELAIQH 319 (587)
Q Consensus 244 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~--~~~-~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 319 (587)
+.+.+.+.+.+...|..|++.|..+...-. ... ....++..++.++++ .+..+-..++..|.++............
T Consensus 337 ~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~ 416 (778)
T 3opb_A 337 EIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXX 416 (778)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhh
Confidence 888888887666669999999887642100 000 012467888888875 5667888888888888876442100000
Q ss_pred HHHHHhHhcCCCcHHH------HHHHHHHHHh-hhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh
Q 007863 320 ILPCVKELSSDSSQHV------RSALATVIMG-MAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392 (587)
Q Consensus 320 ~~~~l~~~~~d~~~~v------r~~a~~~l~~-l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~ 392 (587)
=+..++++.+...+.. ...... +.. -... .....++|.+..+++..++.+|..+++++..++..-...
T Consensus 417 ~l~~Lk~~A~~~~p~~~~~d~~~~~~~~-v~~~~~~~----l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R 491 (778)
T 3opb_A 417 XXXXXXXXXXXXXPAADKVGAEKAAKED-ILLFNEKY----ILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFI 491 (778)
T ss_dssp ------------------CCTHHHHHHH-HHHHHHHH----TTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred hhhhhhhhccccCcccCcccccccchHH-HHHHHHHH----HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 1122222221110100 000000 000 0000 112347888999999999999999999999998653221
Q ss_pred --hHhhhhHHHHHHHhcCCCcH---HHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHcCC-Cch-----------
Q 007863 393 --LLSQSLLPAIVELAEDRHWR---VRLAIIEYIPLLASQLGVGFFD-----DKLGALCMQWLKD-KVY----------- 450 (587)
Q Consensus 393 --~~~~~~~~~l~~~~~~~~~~---vr~~~~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l~d-~~~----------- 450 (587)
...+..+|.+..++.+.... .|..++.++..+.-...+.... ...+|.+..++.. +..
T Consensus 492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 23456788888888765433 8999999998887544332211 1356777788772 221
Q ss_pred --HHHHHHHHHHHHHHHHhCh---h----hhh-hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh--HHHH------
Q 007863 451 --SIRDAAANNVKRLAEEFGP---D----WAM-QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--EITC------ 512 (587)
Q Consensus 451 --~vr~~a~~~l~~l~~~~~~---~----~~~-~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~--~~~~------ 512 (587)
--+..|+.+|.+++..-+. + .+. ...+|.+.+++.+.+..+|.+|++++.+++..-.. ..+.
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~ 651 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ 651 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence 2377899999999975321 1 123 25899999999999999999999999999863321 1121
Q ss_pred -HhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch---HHHH-HhHHHHHHHhcCC--CCccHHHHHHHHHHHHHHH
Q 007863 513 -SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVE-KSIRPCLVELSED--PDVDVRFFATQALQSKDQV 583 (587)
Q Consensus 513 -~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~-~~i~~~l~~l~~d--~~~~Vr~~a~~al~~l~~~ 583 (587)
..-++.++.++...+..+|.+|+.+|..+....+. ..+. ...++.+..++.+ ++.++|.++..++..+.++
T Consensus 652 ~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 652 SLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred hhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 11277888999999999999999999998643322 1222 2466777777777 8999999999999998863
No 57
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.58 E-value=1.1e-11 Score=133.27 Aligned_cols=570 Identities=10% Similarity=0.036 Sum_probs=335.2
Q ss_pred cHHHHHH-HhcC-ccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCCc----c-
Q 007863 10 PIAVLID-ELKN-DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGL----E- 82 (587)
Q Consensus 10 ~~~~l~~-~l~s-~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~----~- 82 (587)
.+...++ .+.. .|++.|..|.+.|..+-+ .| ..|.....++.+....+.++|..++..|.+....++.+ +
T Consensus 7 ~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~--sp-~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~ 83 (980)
T 3ibv_A 7 DVENAVEAALDPSVGPIIKQQATDFIGSLRS--SS-TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLEL 83 (980)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH--ST-THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHc--Ch-hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHH
Confidence 4455553 3333 389999999998887643 23 45666666665432236789988888886655444433 2
Q ss_pred --hHhhhhhHHHhhh-cCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCC-cchhhHHhhhhh----hcc
Q 007863 83 --YANVLLPPLETLC-TVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWF-TARVSSCGLFHV----AYP 154 (587)
Q Consensus 83 --~~~~l~~~l~~l~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~-~~r~~a~~l~~~----~~~ 154 (587)
....++..+.... .+..+.+|.+...++..++....++.+.. +++-+.++....+. ........++.. +..
T Consensus 84 ~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~-~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~ 162 (980)
T 3ibv_A 84 QMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWND-FFASLQGVIAASSQSEFSNFYLKVLLSIGDEIAD 162 (980)
T ss_dssp HHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTT-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCch-HHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHh
Confidence 1233444444321 13468899999999999998876554433 44444333322111 111111222221 111
Q ss_pred C---CCHH-------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhc
Q 007863 155 S---APEA-------------------LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH-LKSEIMSIFEELT 211 (587)
Q Consensus 155 ~---~~~~-------------------~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~-~~~~i~~~l~~l~ 211 (587)
. .++. ..+.++.++.......++.++..+.++++.....++... ..+.+++.+..++
T Consensus 163 ~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L 242 (980)
T 3ibv_A 163 SLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFL 242 (980)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHT
T ss_pred cccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHc
Confidence 0 0110 022233334343344678899999999998887654422 2356788888888
Q ss_pred ccCchhHHHHHHHHHHHHhcccChhhhhhchH------HHHHHhcC-CCchHHHHHHHHHHHHHHHH---h-CCC-----
Q 007863 212 QDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL------PVIVNFSQ-DKSWRVRYMVANQLYELCEA---V-GPE----- 275 (587)
Q Consensus 212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~------~~l~~~~~-d~~~~vR~~a~~~l~~l~~~---~-~~~----- 275 (587)
.+ +.+|..|+++|..+...-.+......++ +.+..+.. +.+..+++..++.+..++.. + ...
T Consensus 243 ~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~ 320 (980)
T 3ibv_A 243 QI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSP 320 (980)
T ss_dssp TS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CH
T ss_pred CC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccch
Confidence 76 7899999999999887654321222222 22222222 45666666555555444322 1 111
Q ss_pred -------CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--------H---HHHHhHHHHHhHhcC---C----
Q 007863 276 -------PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--------E---LAIQHILPCVKELSS---D---- 330 (587)
Q Consensus 276 -------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------~---~~~~~~~~~l~~~~~---d---- 330 (587)
.....+++.+..++.+++++|-..++..+..+...... + .+...+++.+.+-+. |
T Consensus 321 ~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~ 400 (980)
T 3ibv_A 321 ELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWD 400 (980)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCC
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccc
Confidence 11124788888888888889988888777776654321 1 233444444433221 1
Q ss_pred C----c-----HHHHHHHHHHHHhhhhhhchHHHHH----hHHHHHHHhcC---CCChHHHHHHHHHhHHhhhhhchh--
Q 007863 331 S----S-----QHVRSALATVIMGMAPILGKDATIE----QLLPIFLSLLK---DEFPDVRLNIISKLDQVNQVIGID-- 392 (587)
Q Consensus 331 ~----~-----~~vr~~a~~~l~~l~~~~~~~~~~~----~l~~~l~~~l~---d~~~~vr~~a~~~l~~i~~~~~~~-- 392 (587)
. + ...|.... .+-..+..++++.+.+ .+.+.+...+. ..++..+.+++.+++.+++.+...
T Consensus 401 ~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~ 479 (980)
T 3ibv_A 401 DDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDA 479 (980)
T ss_dssp CCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGG
T ss_pred cccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccccc
Confidence 1 1 13566655 5556666667777666 66666666653 345778899999988888765431
Q ss_pred ------hHhhhhHHHHHHHhc-----CCCcHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHH--HcCCCchHHHHHHHH
Q 007863 393 ------LLSQSLLPAIVELAE-----DRHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQ--WLKDKVYSIRDAAAN 458 (587)
Q Consensus 393 ------~~~~~~~~~l~~~~~-----~~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~--~l~d~~~~vr~~a~~ 458 (587)
...+.+++.+..++. ++++.||..+++.++..++-+.. ..+.+.+++.+.. .+.+++..||.+|+.
T Consensus 480 ~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~ 559 (980)
T 3ibv_A 480 FFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWY 559 (980)
T ss_dssp TBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHH
T ss_pred ccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHH
Confidence 223457777777765 78999999999999998887642 2344566777777 777889999999999
Q ss_pred HHHHHHHHhChhh--hhhchHHHHHhhhcC---C------------------ccHHHHHHHHHHHHhhcccC--hH---H
Q 007863 459 NVKRLAEEFGPDW--AMQHIVPQVLEMINN---P------------------HYLYRMTILQAISLLAPVMG--SE---I 510 (587)
Q Consensus 459 ~l~~l~~~~~~~~--~~~~~~~~l~~~l~~---~------------------~~~~r~~a~~~l~~l~~~~~--~~---~ 510 (587)
++..+++.++... +.+.++..+...+.- + ...-+....++++.+....+ .+ .
T Consensus 560 af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~ 639 (980)
T 3ibv_A 560 LFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQAL 639 (980)
T ss_dssp HHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 9999999887642 223344444443331 1 01235567778888876554 22 2
Q ss_pred HHHhHHHHH----HhhcCCCC----ccHH-HHHHHHHHHHHhhhch--------HHHHHhHHHHHHHhcC--CCCccHHH
Q 007863 511 TCSQLLPVV----INASKDRV----PNIK-FNVAKVLQSLIPIVDQ--------SVVEKSIRPCLVELSE--DPDVDVRF 571 (587)
Q Consensus 511 ~~~~~l~~l----~~~l~d~~----~~vR-~~a~~~l~~l~~~~~~--------~~~~~~i~~~l~~l~~--d~~~~Vr~ 571 (587)
+.+.+++.+ ...+.... ...+ ...+.+++.+.+.+.. ......+++.+...++ ..+..||.
T Consensus 640 ~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~ire 719 (980)
T 3ibv_A 640 YCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRG 719 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 344444443 33333221 1112 2567777888876632 1122344555544443 46789999
Q ss_pred HHHHHHHHHHHHhhc
Q 007863 572 FATQALQSKDQVMMS 586 (587)
Q Consensus 572 ~a~~al~~l~~~~~~ 586 (587)
++..++.++...+|.
T Consensus 720 a~~~~~~r~i~~lg~ 734 (980)
T 3ibv_A 720 AVRFTSGRIINVVGP 734 (980)
T ss_dssp HHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHccH
Confidence 999999999888774
No 58
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.58 E-value=4.2e-13 Score=122.37 Aligned_cols=187 Identities=13% Similarity=0.079 Sum_probs=125.9
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh---ChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCh---hh
Q 007863 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DW 471 (587)
Q Consensus 398 ~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~ 471 (587)
.+|.+..++.++++.+|..++..++.++... .........++.+..++.++++.+|..|+.+|+.++..... ..
T Consensus 45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 124 (252)
T 4hxt_A 45 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 124 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444444444444544444444443210 00111123567777888888888888888888888742111 11
Q ss_pred hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH---HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch-
Q 007863 472 AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ- 547 (587)
Q Consensus 472 ~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~- 547 (587)
.....+|.+.+++.++++.+|..++.++++++...... ......+|.+..++.++++.+|..++.+|+.++..-+.
T Consensus 125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 204 (252)
T 4hxt_A 125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA 204 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 23567888888888888889999999999887643221 22456888899999988899999999999998763221
Q ss_pred --HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHh
Q 007863 548 --SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 584 (587)
Q Consensus 548 --~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~ 584 (587)
......+++.|.+++.++++++|..|..++..+...-
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 1233567888899888889999999999999887653
No 59
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.57 E-value=1.6e-11 Score=131.97 Aligned_cols=477 Identities=10% Similarity=0.123 Sum_probs=284.4
Q ss_pred hhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCC--CCcchhhHHhhhhhhccCCCHH--------HHHHHHHHH
Q 007863 99 ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGE--WFTARVSSCGLFHVAYPSAPEA--------LKTELRTIY 168 (587)
Q Consensus 99 ~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~--~~~~r~~a~~l~~~~~~~~~~~--------~~~~l~~~l 168 (587)
++..|+.|.+.|.++-+.- + .+.....++. .+. +..+|..|+..+.......+++ .++.+++.+
T Consensus 21 d~~~r~~A~~~L~~~q~sp--~-aw~~~~~iL~---~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l 94 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSSS--T-GWKICHEIFS---EKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYI 94 (980)
T ss_dssp CHHHHHHHHHHHHHHHHST--T-HHHHHHHHTT---CTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCh--h-HHHHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHH
Confidence 6777777777777665541 1 2222222221 111 4556666666555443333333 445555555
Q ss_pred HHhcC-CCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCch-hHHHHHHHHHHHHhcccCh-----------
Q 007863 169 RQLCQ-DDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQD-SVRLLAVEGCGALGKLLEP----------- 235 (587)
Q Consensus 169 ~~l~~-~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~-~vr~~a~~~l~~l~~~~~~----------- 235 (587)
..... +..+.+|...+.++..++....+ ..|+.+++-+..+++..+. ..-....+.+..+.+.+..
T Consensus 95 ~~~~~~~~~~~IrnKL~~~la~l~~~~~p-~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~ 173 (980)
T 3ibv_A 95 KELSFLDEPAYISNAVQHLLTLLFLQLYP-SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQ 173 (980)
T ss_dssp HHCCSTTSCTHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHHhCc-ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHh
Confidence 54221 34578999999999999887533 3444555555555543222 2233344455543333211
Q ss_pred ------hh----hhhchHHHHHHh----cCCCchHHHHHHHHHHHHHHHHhCCCC-cccchHHHHHHhcCCChHHHHHHH
Q 007863 236 ------QD----CVAHILPVIVNF----SQDKSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYVRLLRDNEAEVRIAA 300 (587)
Q Consensus 236 ------~~----~~~~l~~~l~~~----~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a 300 (587)
+. ..+.+.+.+... ....++.++..++++++......+... ....+++.+.+++.+ +++|.+|
T Consensus 174 r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A 251 (980)
T 3ibv_A 174 KDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAA 251 (980)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHH
T ss_pred hhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHH
Confidence 00 011123333333 333677888889999888776443221 124688888888887 6899999
Q ss_pred HHhHHHHHHhhCHHHHHHhHH------HHHhHhcC-CCcHHHHHHHHHHHHhhhhhhc-----h-----------HHHHH
Q 007863 301 AGKVTKICRILNPELAIQHIL------PCVKELSS-DSSQHVRSALATVIMGMAPILG-----K-----------DATIE 357 (587)
Q Consensus 301 ~~~l~~l~~~~~~~~~~~~~~------~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~-----~-----------~~~~~ 357 (587)
+.+|..+...-......-.++ +.+..+.. +.+..+....++.+..++..+- . .....
T Consensus 252 ~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~ 331 (980)
T 3ibv_A 252 CETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLY 331 (980)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHH
Confidence 999999877543221111122 22222222 4566677666666655543211 0 03345
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch--------h---hHhhhhHHHHHHHhc---CCCc------------
Q 007863 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--------D---LLSQSLLPAIVELAE---DRHW------------ 411 (587)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--------~---~~~~~~~~~l~~~~~---~~~~------------ 411 (587)
.++|.+..++.+++.+|-..++..+..+...... + .+...+++.+..-+. +.+|
T Consensus 332 ~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F 411 (980)
T 3ibv_A 332 NLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEF 411 (980)
T ss_dssp HTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHH
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHH
Confidence 6889999999999889888877777666543321 1 112223333333221 1122
Q ss_pred -HHHHHHHHHHHHHHHhhChhhHHH----HHHHHHHHHcC---CCchHHHHHHHHHHHHHHHHhChhh--------hhhc
Q 007863 412 -RVRLAIIEYIPLLASQLGVGFFDD----KLGALCMQWLK---DKVYSIRDAAANNVKRLAEEFGPDW--------AMQH 475 (587)
Q Consensus 412 -~vr~~~~~~l~~l~~~~~~~~~~~----~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~~--------~~~~ 475 (587)
..|+... .+-.....++++.+.+ .+.+.+.+.+. +.+|..+++++-+++.+++.+.... ..+.
T Consensus 412 ~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~ 490 (980)
T 3ibv_A 412 QEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTV 490 (980)
T ss_dssp HHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCH
T ss_pred HHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHH
Confidence 3566555 5555666677777666 66666666653 4679999999999999888654321 1234
Q ss_pred hHHHHHhhhc-----CCccHHHHHHHHHHHHhhcccChH-HHHHhHHHHHHh--hcCCCCccHHHHHHHHHHHHHhhhch
Q 007863 476 IVPQVLEMIN-----NPHYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVIN--ASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (587)
Q Consensus 476 ~~~~l~~~l~-----~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~~l~~l~~--~l~d~~~~vR~~a~~~l~~l~~~~~~ 547 (587)
+++.+..++. ++++.+|.+++++++..+..+... .+...+++.++. .+.++++.||.+|+.++..+++....
T Consensus 491 l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 491 LSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 5666666544 778999999999999999876532 367778888888 88889999999999999999988765
Q ss_pred H--HHHHhHHHHHHHhcCC---C----C--------------ccHHHHHHHHHHHHHHHhh
Q 007863 548 S--VVEKSIRPCLVELSED---P----D--------------VDVRFFATQALQSKDQVMM 585 (587)
Q Consensus 548 ~--~~~~~i~~~l~~l~~d---~----~--------------~~Vr~~a~~al~~l~~~~~ 585 (587)
. ++...++..+..++.- + + .+-+....+|++.+.+.++
T Consensus 571 ~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~ 631 (980)
T 3ibv_A 571 QVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGN 631 (980)
T ss_dssp TCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSC
T ss_pred HhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCC
Confidence 3 3444556555554331 1 1 1246778888888887654
No 60
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.57 E-value=1.3e-10 Score=125.01 Aligned_cols=508 Identities=9% Similarity=0.034 Sum_probs=302.6
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccC----cCCcc---
Q 007863 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGLE--- 82 (587)
Q Consensus 10 ~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~----~~~~~--- 82 (587)
.++.++..+.++++..|..|-+.|..+-+. | ..|..+...+.. ..++++|..++..+.+.... ++.++
T Consensus 17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~s--p-~aw~~~~~iL~~--s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~ 91 (1023)
T 4hat_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDN--P-DAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDHRIG 91 (1023)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHC--T-TGGGGHHHHHHH--CCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHcC--c-cHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence 688888889888888999999888776432 2 345555555533 34678998888888665432 23222
Q ss_pred hHhhhhhHHHhhhcCc-----hhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCC
Q 007863 83 YANVLLPPLETLCTVE-----ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAP 157 (587)
Q Consensus 83 ~~~~l~~~l~~l~~~~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~ 157 (587)
....++..+.+...++ .+.++.+.+.++..+++...++.+ +.+++.+.++..+. .........++..+
T Consensus 92 Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~W-p~~l~dL~~~l~~~-~~~~~~~L~iL~~L----- 164 (1023)
T 4hat_C 92 IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW-PEFIPELIGSSSSS-VNVCENNMIVLKLL----- 164 (1023)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC-TTHHHHHHHHTTTC-HHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhc-hHHHHHHHHHhcCC-HHHHHHHHHHHHHH-----
Confidence 2244455554443333 467788888899998887655543 44566655554432 11111111222111
Q ss_pred HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccc-CchhHHHHHHHHHHHHhcccCh
Q 007863 158 EALKTELRTIYRQLCQDD-MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP 235 (587)
Q Consensus 158 ~~~~~~l~~~l~~l~~~~-~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~ 235 (587)
.+-+.....+. ...-|...-+.+..- .+.+++.+...+++ ..+.+...+.+++.+..+.++-
T Consensus 165 -------~EEV~~~~~~~l~~~r~~~lk~~l~~~---------~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i 228 (1023)
T 4hat_C 165 -------SEEVFDFSAEQMTQAKALHLKNSMSKE---------FEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPY 228 (1023)
T ss_dssp -------HHHHHTSCTTTSCHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCT
T ss_pred -------HHHHHHhhhccchHHHHHHHHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCH
Confidence 11111111111 122222222222211 23344444444433 4567788899999998887765
Q ss_pred hh-hhhchHHHHH-HhcCCCchHHHHHHHHHHHHHHHH-h-CCC-Ccccc-------hHHHH-HHh-------------c
Q 007863 236 QD-CVAHILPVIV-NFSQDKSWRVRYMVANQLYELCEA-V-GPE-PTRSD-------VVPAY-VRL-------------L 289 (587)
Q Consensus 236 ~~-~~~~l~~~l~-~~~~d~~~~vR~~a~~~l~~l~~~-~-~~~-~~~~~-------l~~~l-~~~-------------l 289 (587)
.. ..+.+++.+. .++. ++..|..|+++|..++.. . ++. ...+. +++.+ ..+ -
T Consensus 229 ~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~ 306 (1023)
T 4hat_C 229 RYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANA 306 (1023)
T ss_dssp HHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHT
T ss_pred HHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhcc
Confidence 32 3356778777 6664 467999999999988752 1 110 01111 11111 111 1
Q ss_pred CCChHHHHHHHHHhHHHHHHhhCH------H--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc--------hH
Q 007863 290 RDNEAEVRIAAAGKVTKICRILNP------E--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--------KD 353 (587)
Q Consensus 290 ~d~~~~vr~~a~~~l~~l~~~~~~------~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--------~~ 353 (587)
.+.+.+....-+..+..+++.... . ......+..+..+...+++.+=..++.....+....- ..
T Consensus 307 ~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~ 386 (1023)
T 4hat_C 307 NGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYE 386 (1023)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 334566666666666666664321 1 1122233455666666778886677777666654321 12
Q ss_pred HHHHhHHHHHHHhcCCCC---------------------hHHHHHHH-HHhHHhhhhhchhhHhhhhHHHHHHHhcC--C
Q 007863 354 ATIEQLLPIFLSLLKDEF---------------------PDVRLNII-SKLDQVNQVIGIDLLSQSLLPAIVELAED--R 409 (587)
Q Consensus 354 ~~~~~l~~~l~~~l~d~~---------------------~~vr~~a~-~~l~~i~~~~~~~~~~~~~~~~l~~~~~~--~ 409 (587)
.+...+++.+..-+.-++ ........ ..|..+....+ ....+.+++.+.+.+.+ .
T Consensus 387 ~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~-~~~~~~~~~~l~~~l~~~~~ 465 (1023)
T 4hat_C 387 EICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEW 465 (1023)
T ss_dssp HHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHSSTTC
T ss_pred HHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHHhcCCCC
Confidence 234456666665443221 10111111 23333332223 34446677777766654 6
Q ss_pred CcHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHHcC-----CCchHHHHHHHHHHHHHHHHhChh-hhhhchHHHH
Q 007863 410 HWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLK-----DKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQV 480 (587)
Q Consensus 410 ~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l 480 (587)
+|+.|.+++-+++.++.....+ .+.+.++|.++.+.. |+...||..++.++|.+.+.+... .+.+.+++.+
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L 545 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKL 545 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 8999999999999999876543 345667777777765 456678888999999888766432 2456777778
Q ss_pred HhhhcCCccHHHHHHHHHHHHhhcccChHH----------HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH
Q 007863 481 LEMINNPHYLYRMTILQAISLLAPVMGSEI----------TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 481 ~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----------~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 548 (587)
++.+.++++.+..+|++++..+++.++... +.+.++..+.....+-.+.-+..+.++++.++...+..
T Consensus 546 ~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~ 623 (1023)
T 4hat_C 546 FEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSV 623 (1023)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCH
Confidence 888888888999999999999998776542 56677777777777777888899999999999988754
No 61
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.56 E-value=7.9e-14 Score=125.02 Aligned_cols=186 Identities=13% Similarity=0.188 Sum_probs=144.2
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHH-HHHhhC-----hhhHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHHhC-hhh
Q 007863 400 PAIVELAEDRHWRVRLAIIEYIPL-LASQLG-----VGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFG-PDW 471 (587)
Q Consensus 400 ~~l~~~~~~~~~~vr~~~~~~l~~-l~~~~~-----~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~-~~~ 471 (587)
+.+.+.+.+.+|.-|.+++..+.. +..... ...+ ..++..+...+ +|.+..||..|+.+++.+++.++ ..+
T Consensus 19 ~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f 97 (249)
T 2qk1_A 19 KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGF 97 (249)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred hhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccc
Confidence 345566788899999999888887 764311 1112 35677777788 78899999999999999998887 442
Q ss_pred ---hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH---HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhh
Q 007863 472 ---AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 472 ---~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~ 545 (587)
+...++|.+++.+.|+...+|.++..++..+...+++. .+.+.+++.+...++++++.+|..++.+|+.++...
T Consensus 98 ~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 98 SKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp CHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 34678888888888888889888888888888876432 124578888888888888999999999999888776
Q ss_pred ch--H---HHH-HhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863 546 DQ--S---VVE-KSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 586 (587)
Q Consensus 546 ~~--~---~~~-~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~~ 586 (587)
+. . .+. ..++|.|.+++.|++++||..|.++++.++..+|+
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 53 2 345 77889999988999999999999999999988885
No 62
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.6e-11 Score=122.32 Aligned_cols=503 Identities=10% Similarity=0.048 Sum_probs=292.7
Q ss_pred hhcHHHHHHHhChhhhhhhhcccccc-c--cCCchHHHHHHHHHhcccccCcCCcchHhhhhhHHHhhhcCchhH----H
Q 007863 30 IRRLSTIARALGEERTRKELIPFLSE-N--NDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETC----V 102 (587)
Q Consensus 30 ~~~l~~~~~~~~~~~~~~~l~p~l~~-~--~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~----v 102 (587)
+..+.++..+++. .+++ +.|+.. . -.+.++||..+.-.+.++.+..+ ......+..++..++.+.+.. -
T Consensus 153 l~~~~~l~~~~~~--~~~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~e~~~~~~~~~ 228 (778)
T 3opb_A 153 LSIILQLLNKFKY--NFKE-VRFLVKELILRISEDEVKSMMLIIFAELQSSFQ-KDFDKAVVDFMSSLIVEAEIDVGNDP 228 (778)
T ss_dssp HHHHHHHHHHSCC--CSTT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHHHcCc--cccc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHhhccCCCCcc
Confidence 3444444455442 3344 444433 1 23455676555544444332212 233455556666555211111 1
Q ss_pred HHHHHHHHHHHHhhcCh---h-hHhhhhHHHHHHhhcCC-CCcchhhHHhhhhhhccCCC--HHHHHHHHHHHHHhcCCC
Q 007863 103 RDKAVESLCRIGSQMRE---Q-DVVEHFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAP--EALKTELRTIYRQLCQDD 175 (587)
Q Consensus 103 r~~a~~~l~~l~~~~~~---~-~~~~~ll~~~~~l~~~~-~~~~r~~a~~l~~~~~~~~~--~~~~~~l~~~l~~l~~~~ 175 (587)
-..+..++..+.-..+. + ...+.+.|.+.+...+. ......++..++...+..-+ .-+.+..++++...+++
T Consensus 229 ~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~- 307 (778)
T 3opb_A 229 LSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV- 307 (778)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc-
Confidence 12233344433322211 0 11233455555544332 22333455556655443221 12556777888888865
Q ss_pred CHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh-hhh--hhchHHHHHHhcC
Q 007863 176 MPMVRRSAATNLGKFAATVEA-AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QDC--VAHILPVIVNFSQ 251 (587)
Q Consensus 176 ~~~vR~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~--~~~l~~~l~~~~~ 251 (587)
..+|..++-.|.++...-+. ......+.+.+.+++.+++...|..|++.|..+...-.- +.. ...++..+.++++
T Consensus 308 -~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk 386 (778)
T 3opb_A 308 -EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIK 386 (778)
T ss_dssp -GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHh
Confidence 47888888888887654322 223456788888888876656699999999998643211 111 1235677777777
Q ss_pred C-CchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHH------HHHHHhHHH-HHHhhCHHHHHHhHHHH
Q 007863 252 D-KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVR------IAAAGKVTK-ICRILNPELAIQHILPC 323 (587)
Q Consensus 252 d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr------~~a~~~l~~-l~~~~~~~~~~~~~~~~ 323 (587)
+ .+..+-..++..|.++....+.......=+.-+.++.+-..++.. .... .+.. -...+ ....++|.
T Consensus 387 ~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~-~v~~~~~~~l----~eaGvIp~ 461 (778)
T 3opb_A 387 SQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKE-DILLFNEKYI----LRTELISF 461 (778)
T ss_dssp TTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHH-HHHHHHHHHT----TTTTHHHH
T ss_pred CCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchH-HHHHHHHHHH----HHCcCHHH
Confidence 4 566788888898888876544311101111111111111001100 0000 0111 00111 11347888
Q ss_pred HhHhcCCCcHHHHHHHHHHHHhhhhhhch--HHHHHhHHHHHHHhcCCCChH---HHHHHHHHhHHhhhhhchhhHh---
Q 007863 324 VKELSSDSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPD---VRLNIISKLDQVNQVIGIDLLS--- 395 (587)
Q Consensus 324 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~---vr~~a~~~l~~i~~~~~~~~~~--- 395 (587)
+..++.+.++.+|..+++++..++..-.. ....+..++.+..++.+.... +|..|+.+|.++.....+....
T Consensus 462 Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~ 541 (778)
T 3opb_A 462 LKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKY 541 (778)
T ss_dssp HHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCC
Confidence 89999999999999999999999755321 123345678888888877544 8999999999998544332211
Q ss_pred --hhhHHHHHHHhcC-CCc-------------HHHHHHHHHHHHHHHhhCh-------hhHH-HHHHHHHHHHcCCCchH
Q 007863 396 --QSLLPAIVELAED-RHW-------------RVRLAIIEYIPLLASQLGV-------GFFD-DKLGALCMQWLKDKVYS 451 (587)
Q Consensus 396 --~~~~~~l~~~~~~-~~~-------------~vr~~~~~~l~~l~~~~~~-------~~~~-~~l~~~l~~~l~d~~~~ 451 (587)
...+|.+..++.. +.. .-+..++.++..++..-+. ..+. ...+|.+..++.+++..
T Consensus 542 ~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~ 621 (778)
T 3opb_A 542 SALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVP 621 (778)
T ss_dssp CSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHH
T ss_pred ccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHH
Confidence 2678888888872 221 2277888888888875321 1233 25788999999999999
Q ss_pred HHHHHHHHHHHHHHHhCh---hhhhh---c---hHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh--HHH-H-HhHHHH
Q 007863 452 IRDAAANNVKRLAEEFGP---DWAMQ---H---IVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--EIT-C-SQLLPV 518 (587)
Q Consensus 452 vr~~a~~~l~~l~~~~~~---~~~~~---~---~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~-~~~l~~ 518 (587)
||.+|+.+++.++..-.. +++.. . -++.+..++...+..+|.+|..++.++....+. ... . ...+..
T Consensus 622 VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~ 701 (778)
T 3opb_A 622 LQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIEN 701 (778)
T ss_dssp HHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHH
Confidence 999999999999963321 22211 1 267788889989999999999999998643221 111 1 246777
Q ss_pred HHhhcCC--CCccHHHHHHHHHHHHHh
Q 007863 519 VINASKD--RVPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 519 l~~~l~d--~~~~vR~~a~~~l~~l~~ 543 (587)
++.++.+ +++.+|..++.++..+..
T Consensus 702 Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 702 AIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 7778887 899999999999999987
No 63
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.55 E-value=1.7e-12 Score=128.56 Aligned_cols=149 Identities=11% Similarity=0.028 Sum_probs=108.5
Q ss_pred hhhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChh--h-----H-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Q 007863 396 QSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVG--F-----F-DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466 (587)
Q Consensus 396 ~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~--~-----~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 466 (587)
...++.+..++.+ ++..++..++..+..++..-+.. . + ....+|.+.+++.+.+.++|..|+.+|..++..
T Consensus 282 ~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 3456777777754 56889999999998887532211 1 1 124578999999999999999999999999863
Q ss_pred hChh-hhhhchHHHHHhhhcCCcc------HHHHHHHHHHHHhhcccChH---HHHHhHHHHHHhhcCCC-CccHHHHHH
Q 007863 467 FGPD-WAMQHIVPQVLEMINNPHY------LYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDR-VPNIKFNVA 535 (587)
Q Consensus 467 ~~~~-~~~~~~~~~l~~~l~~~~~------~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~-~~~vR~~a~ 535 (587)
-... .+....+|.+.+++.+++. .+...++.++.++...-... ......++.+..++.+. +..++..|+
T Consensus 362 ~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~ 441 (457)
T 1xm9_A 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR 441 (457)
T ss_dssp GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHH
Confidence 2221 1346689999999877643 46778888888887533321 11345788999999988 999999999
Q ss_pred HHHHHHHhh
Q 007863 536 KVLQSLIPI 544 (587)
Q Consensus 536 ~~l~~l~~~ 544 (587)
..|..++.+
T Consensus 442 ~~L~~~~~~ 450 (457)
T 1xm9_A 442 LLLSDMWSS 450 (457)
T ss_dssp HHHHTTSSS
T ss_pred HHHHHHHcc
Confidence 999988653
No 64
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.54 E-value=2.4e-13 Score=123.88 Aligned_cols=222 Identities=16% Similarity=0.122 Sum_probs=153.8
Q ss_pred HHHHHhcCCCChHHHHHHHHHhHHhhhhhch---hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC---hhhHH
Q 007863 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFD 434 (587)
Q Consensus 361 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~---~~~~~ 434 (587)
+.+...+.++++++|..++.++..+...-.. .......+|.+..++.++++.+|..++..++.++.... .....
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4455555555566666666666444332100 01123456666666666666666666666666653110 11112
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh---hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH--
Q 007863 435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE-- 509 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-- 509 (587)
...+|.+..+++++++.+|..|+.+|+.++...... ......+|.+.+++.++++.+|..++.++++++......
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 174 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 174 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 236788888898999999999999999887532221 233568999999999999999999999999998643221
Q ss_pred -HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch---HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863 510 -ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 510 -~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~ 582 (587)
......+|.+..++.++++.+|..++.+|+.++..-+. ......+++.|.+++.+.+++||..|..++..+++
T Consensus 175 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 175 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 12356789999999999999999999999999853222 13345688999999999999999999999998764
No 65
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.54 E-value=8.9e-12 Score=123.93 Aligned_cols=369 Identities=12% Similarity=0.070 Sum_probs=200.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh-h--hhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh---
Q 007863 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-A--HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--- 235 (587)
Q Consensus 162 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-~--~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--- 235 (587)
..-+|.+..++.++++.++..|+.+|..++..-.. . ....-.+|.|.+++.++++.++..|+.+|..++..-..
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 34566666777777777777777777666642221 0 11122456677777777777777777777776642111
Q ss_pred -hhhhhchHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhCC-CCcccchHHHHHHhcC------------------CChH
Q 007863 236 -QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGP-EPTRSDVVPAYVRLLR------------------DNEA 294 (587)
Q Consensus 236 -~~~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~------------------d~~~ 294 (587)
.......+|.+..++.+ .+..++..++.+|..++..-.. .......+|.+.+++. ..+.
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccH
Confidence 11223345666666654 4556666666666665531000 0000112344444430 1123
Q ss_pred HHHHHHHHhHHHHHHhhCH-H-HHH--HhHHHHHhHhcC------CCcHHHHHHHHHHHHhhhhhhchHHH-HHhHHHHH
Q 007863 295 EVRIAAAGKVTKICRILNP-E-LAI--QHILPCVKELSS------DSSQHVRSALATVIMGMAPILGKDAT-IEQLLPIF 363 (587)
Q Consensus 295 ~vr~~a~~~l~~l~~~~~~-~-~~~--~~~~~~l~~~~~------d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~l~~~l 363 (587)
.|+..|+.+|..++..-.. . ... ..+++.+..+++ +.+......++.+|..++.....+.- .+.+...
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~- 285 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA- 285 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhh-
Confidence 4444444444444432111 0 000 112222222221 12333334444444444322111100 0000000
Q ss_pred HHhcCCCChHHHHHHHHHhH-Hhhhhhchhh-HhhhhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhCh--h----hH-
Q 007863 364 LSLLKDEFPDVRLNIISKLD-QVNQVIGIDL-LSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGV--G----FF- 433 (587)
Q Consensus 364 ~~~l~d~~~~vr~~a~~~l~-~i~~~~~~~~-~~~~~~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~--~----~~- 433 (587)
....+ .+ .....-|.+. +....++.+..++. ..++.++..++.+|..++..-+. . .+
T Consensus 286 ---~~~~~----------~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~ 352 (584)
T 3l6x_A 286 ---APNVA----------NNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALR 352 (584)
T ss_dssp -----------------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHT
T ss_pred ---ccccc----------ccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHH
Confidence 00000 00 0000011111 12345677777775 46799999999999888743211 1 11
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh-hhhhchHHHHHhhhcCC--------ccHHHHHHHHHHHHhhc
Q 007863 434 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLEMINNP--------HYLYRMTILQAISLLAP 504 (587)
Q Consensus 434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~~~--------~~~~r~~a~~~l~~l~~ 504 (587)
....+|.+..++.+.+..++..|+.+|..++..-... .+....+|.+..++.++ +..+...++.+++++..
T Consensus 353 ~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a 432 (584)
T 3l6x_A 353 QEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA 432 (584)
T ss_dssp SHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc
Confidence 1356899999999999999999999999998754332 24567899999998776 34678889999988864
Q ss_pred ccCh---HHHHHhHHHHHHhhcCCC--CccHHHHHHHHHHHHHhh
Q 007863 505 VMGS---EITCSQLLPVVINASKDR--VPNIKFNVAKVLQSLIPI 544 (587)
Q Consensus 505 ~~~~---~~~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~l~~~ 544 (587)
.-.. .......+|.+..++.+. .+.++..|+.+|..++.+
T Consensus 433 ~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 433 ENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 3211 123456899999999886 889999999999999754
No 66
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.53 E-value=1.5e-12 Score=118.70 Aligned_cols=149 Identities=11% Similarity=0.039 Sum_probs=102.5
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCh---hh
Q 007863 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DW 471 (587)
Q Consensus 398 ~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~ 471 (587)
.+|.+..++.++++.+|..++..+..++.... ........++.+..++.++++.+|..++.+|+.++..... ..
T Consensus 87 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 166 (252)
T 4hxt_A 87 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 166 (252)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444555555555555555555544442110 0111223577788888888899999999999988753211 11
Q ss_pred hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH---HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhc
Q 007863 472 AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 472 ~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~ 546 (587)
.....+|.+.+++.+++..+|..++.++.+++...... ......++.+..++.++++.+|..|+.+|+.+....+
T Consensus 167 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 167 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 23568899999999999999999999999998632211 1245678999999999999999999999999987644
No 67
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.53 E-value=3.9e-10 Score=116.32 Aligned_cols=260 Identities=14% Similarity=0.051 Sum_probs=148.7
Q ss_pred ChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCc--------HHHHHHHHHHHHhhhhhhchHHHHHhHHHHH
Q 007863 292 NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS--------QHVRSALATVIMGMAPILGKDATIEQLLPIF 363 (587)
Q Consensus 292 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~--------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l 363 (587)
+++.+|..|+.++|-+....+.+ ++..+...+.+++ ..+|..++-.||-+.-..+.+. +.+.+
T Consensus 407 ~~~~ik~GAllaLGli~ag~~~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~ee----v~e~L 477 (963)
T 4ady_A 407 SSRFIKGGSLYGLGLIYAGFGRD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIE----VYEAL 477 (963)
T ss_dssp SCHHHHHHHHHHHHHHTTTTTHH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHH----HHHHH
T ss_pred CcHHHHHHHHHHHHHhcCCCcHH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHH----HHHHH
Confidence 34556666666666555443332 2233333332222 4566666666655443222222 33344
Q ss_pred HHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHH
Q 007863 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ 443 (587)
Q Consensus 364 ~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ 443 (587)
...+.|.+..+|..++.+|+.+.-.-|.....+.++.. +..+.+..+|..+...|+.+. +|.+...+.++. .
T Consensus 478 ~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~---~~e~~~e~vrR~aalgLGll~--~g~~e~~~~li~---~ 549 (963)
T 4ady_A 478 KEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTY---SQETQHGNITRGLAVGLALIN--YGRQELADDLIT---K 549 (963)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH---HHHCSCHHHHHHHHHHHHHHT--TTCGGGGHHHHH---H
T ss_pred HHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHH---HhccCcHHHHHHHHHHHHhhh--CCChHHHHHHHH---H
Confidence 44445555566666666666654333333322223322 223455566666666665542 233222222222 2
Q ss_pred HcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHh-hhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHh-
Q 007863 444 WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE-MINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVIN- 521 (587)
Q Consensus 444 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~- 521 (587)
+..+.++-+|..++.+++--+-..|.. ..+..++. +..|++..+|.+|+.+|+.+... .. ...+.++.
T Consensus 550 L~~~~dp~vRygaa~alglAyaGTGn~----~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g--~~----e~v~rlv~~ 619 (963)
T 4ady_A 550 MLASDESLLRYGGAFTIALAYAGTGNN----SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLR--DY----TTVPRIVQL 619 (963)
T ss_dssp HHHCSCHHHHHHHHHHHHHHTTTSCCH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSS--SC----SSHHHHTTT
T ss_pred HHhCCCHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHhccCCcHHHHHHHHHHHHhhccC--CH----HHHHHHHHH
Confidence 234667777777777776555444443 23333333 24567778999999999887542 11 23444444
Q ss_pred hcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863 522 ASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 522 ~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~ 582 (587)
+.++.++.||..++.+++.++..-+. ..++..|..+..|++..||..|+.||+.+..
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 45678999999999999999754332 4677889999999999999999999998753
No 68
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.53 E-value=5e-13 Score=119.76 Aligned_cols=196 Identities=14% Similarity=0.242 Sum_probs=123.7
Q ss_pred hhhchHHHHHHhcCCCchHHHHHHHHHHHH-HHHHhCCC----CcccchHHHHHHhc-CCChHHHHHHHHHhHHHHHHhh
Q 007863 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYE-LCEAVGPE----PTRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRIL 311 (587)
Q Consensus 238 ~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~-l~~~~~~~----~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~ 311 (587)
+.+.+-+-+.+.+++++|..|..++..|.. ++...+.- .....++..+...+ +|.+..||..|+++++.++..+
T Consensus 13 i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l 92 (249)
T 2qk1_A 13 ILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL 92 (249)
T ss_dssp CGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 334444455666678888888888888887 76432221 11235666777777 6777788888888888887777
Q ss_pred C-HH---HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH---HHHHhHHHHHHHhcCCCChHHHHHHHHHhHH
Q 007863 312 N-PE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384 (587)
Q Consensus 312 ~-~~---~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 384 (587)
+ +. .+...++|.+...++|+...||.++..++..++...++. .+.+.+++.+...+++.++.+|..++..+..
T Consensus 93 ~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~ 172 (249)
T 2qk1_A 93 KTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNA 172 (249)
T ss_dssp CTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 6 32 355667777777777777777777777777776655321 1134556666666666677777777777777
Q ss_pred hhhhhch--h---hHh-hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH
Q 007863 385 VNQVIGI--D---LLS-QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 433 (587)
Q Consensus 385 i~~~~~~--~---~~~-~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~ 433 (587)
+....+. . .+. +.++|.+..++.|.+..+|..+.++++.+...+|.+.+
T Consensus 173 ~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~ 227 (249)
T 2qk1_A 173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTF 227 (249)
T ss_dssp HHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGG
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHH
Confidence 6655542 1 123 45566666666666666666666666666666665443
No 69
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.52 E-value=2.4e-13 Score=123.84 Aligned_cols=223 Identities=13% Similarity=0.090 Sum_probs=167.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh---hhh
Q 007863 165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDC 238 (587)
Q Consensus 165 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~ 238 (587)
++.+...++++++.+|..++..|..+...-.. .......+|.+.++++++++.+|..|+.+|..++...+. ...
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45566777888899999999999876664211 122334678899999999999999999999999864332 122
Q ss_pred hhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH-
Q 007863 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE- 314 (587)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~- 314 (587)
....+|.+..++.++++.+|..++.+|++++..... .......+|.+.++++++++.+|..++.+|+.++......
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 173 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 345889999999999999999999999998643111 1112357899999999999999999999999998632211
Q ss_pred --HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch---HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhh
Q 007863 315 --LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387 (587)
Q Consensus 315 --~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~ 387 (587)
.....++|.+.+++.++++.+|..++.+++.++..-.. .......+|.+..++.+.++.+|..++.+|..++.
T Consensus 174 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 12355788899999999999999999999998743221 11233477888888888889999999998887753
No 70
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.49 E-value=3.7e-10 Score=121.42 Aligned_cols=474 Identities=8% Similarity=0.031 Sum_probs=288.8
Q ss_pred HHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhc----cCCCHH----HHHHHHHHHHHhc
Q 007863 101 CVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAY----PSAPEA----LKTELRTIYRQLC 172 (587)
Q Consensus 101 ~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~----~~~~~~----~~~~l~~~l~~l~ 172 (587)
..|+.|-+.|.++-+.- +.......++. .+.+..+|..|+..+.... ...+++ .++.+++.+....
T Consensus 31 ~~r~~A~~~L~~~q~sp---~aw~~~~~iL~---~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~~~~ 104 (1023)
T 4hat_C 31 VQQKQAQEILTKFQDNP---DAWQKADQILQ---FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMC 104 (1023)
T ss_dssp HHHHHHHHHHHHHHHCT---TGGGGHHHHHH---HCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCc---cHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhc
Confidence 37778887777766542 22333333332 2335567777776655443 245554 4455566555544
Q ss_pred CCC-----CHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh---h--------
Q 007863 173 QDD-----MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---Q-------- 236 (587)
Q Consensus 173 ~~~-----~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~-------- 236 (587)
.++ .+.+|...+.++..++...-+ ..++.+++.+...++.. +.........|..+.+.+.. +
T Consensus 105 ~~~~~i~~~~~i~nKLa~~la~I~~~~~p-~~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~ 182 (1023)
T 4hat_C 105 QDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSAEQMTQAKAL 182 (1023)
T ss_dssp HSHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHH
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHhCh-hhchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhhccchHHHHH
Confidence 443 467888899999998886533 34667777777777654 34456666666665554211 0
Q ss_pred -------hhhhchHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCCCC-cccchHHHHH-HhcCCChHHHHHHHHHhHHH
Q 007863 237 -------DCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYV-RLLRDNEAEVRIAAAGKVTK 306 (587)
Q Consensus 237 -------~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~-~~l~d~~~~vr~~a~~~l~~ 306 (587)
...+.+++.+...++ ..+..+...+.++++.....++-.. ....+++.+. .++.+ ++.|.+|+.+|..
T Consensus 183 ~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~~--~~~r~~A~ecL~e 260 (1023)
T 4hat_C 183 HLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTS--PDTRAITLKCLTE 260 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHS--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcCC--HHHHHHHHHHHHH
Confidence 112334555555554 3466788888899888776544321 2346888888 77754 6799999999999
Q ss_pred HHHh-h-CHH-HHH-------HhHHHHH-hHh-------------cCCCcHHHHHHHHHHHHhhhhhhch--------HH
Q 007863 307 ICRI-L-NPE-LAI-------QHILPCV-KEL-------------SSDSSQHVRSALATVIMGMAPILGK--------DA 354 (587)
Q Consensus 307 l~~~-~-~~~-~~~-------~~~~~~l-~~~-------------~~d~~~~vr~~a~~~l~~l~~~~~~--------~~ 354 (587)
+... . ++. .+. ..+++.+ ..+ ..+.+.......+..+..+++.... ..
T Consensus 261 Iv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~ 340 (1023)
T 4hat_C 261 VSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRE 340 (1023)
T ss_dssp HHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHH
T ss_pred HHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhH
Confidence 9862 2 220 111 1222222 111 1223455555666666655543211 11
Q ss_pred HHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh--------hHhhhhHHHHHHHhc---------C--CCc----
Q 007863 355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--------LLSQSLLPAIVELAE---------D--RHW---- 411 (587)
Q Consensus 355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--------~~~~~~~~~l~~~~~---------~--~~~---- 411 (587)
.....+..+..+...++.++-..++.....+.+.+-.+ .+...+++.+...+. + ..|
T Consensus 341 ~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~ 420 (1023)
T 4hat_C 341 LLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREF 420 (1023)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECS
T ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHh
Confidence 22223345556666667788777776666655433211 111233444433221 1 123
Q ss_pred ----H--HHH-HHHHHHHHHHHhhChhhHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHHHhChh---hhhhchHHH
Q 007863 412 ----R--VRL-AIIEYIPLLASQLGVGFFDDKLGALCMQWLKD--KVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQ 479 (587)
Q Consensus 412 ----~--vr~-~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~ 479 (587)
+ ... ..-+.+..+....+. ...+.+.+.+.+.+.+ .+|..|++++-++|.+......+ .+...++|.
T Consensus 421 ~~d~d~~~~f~~~Rd~L~~l~~l~~~-~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~ 499 (1023)
T 4hat_C 421 VKESDTIQLYKSEREVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKD 499 (1023)
T ss_dssp SCCGGGHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhccCHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence 1 111 111444444443333 4445666766666654 68999999999999998766543 245677777
Q ss_pred HHhhhc-----CCccHHHHHHHHHHHHhhcccCh-HHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH-----
Q 007863 480 VLEMIN-----NPHYLYRMTILQAISLLAPVMGS-EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----- 548 (587)
Q Consensus 480 l~~~l~-----~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~----- 548 (587)
+..+.. |+...+|.++++++|..++.+.. ..+.+.++..++..+.++++.|...|+.++..++......
T Consensus 500 Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~ 579 (1023)
T 4hat_C 500 LLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQ 579 (1023)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCC
T ss_pred HHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 777765 35667888999999999986643 2367888888999999999999999999999999876543
Q ss_pred -----HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhh
Q 007863 549 -----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 585 (587)
Q Consensus 549 -----~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~ 585 (587)
++...++..+.+...+-++.-+..+.+|++.+.+.++
T Consensus 580 ~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 580 PRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp TTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 2556667777776677777888899999998887765
No 71
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.48 E-value=8.9e-11 Score=114.12 Aligned_cols=245 Identities=12% Similarity=0.013 Sum_probs=170.5
Q ss_pred HHHHHHHhhhhhhch-H-HHHHhHHHHHHHhcC-----------CCChHHHHHHHHHhHHhhhhhc-hh-hH--hhhhHH
Q 007863 338 ALATVIMGMAPILGK-D-ATIEQLLPIFLSLLK-----------DEFPDVRLNIISKLDQVNQVIG-ID-LL--SQSLLP 400 (587)
Q Consensus 338 ~a~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l~-----------d~~~~vr~~a~~~l~~i~~~~~-~~-~~--~~~~~~ 400 (587)
.|+.+|+.++..-.. + ......++.+..++. ..++.++..++++|..++..-. .. .+ ....+|
T Consensus 167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp 246 (458)
T 3nmz_A 167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 246 (458)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence 677777777533111 1 112235566666662 1246788999999998885422 11 12 235689
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhCh---hhH-HHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHhC---hhhh
Q 007863 401 AIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFF-DDKLGALCMQW-LKDKVYSIRDAAANNVKRLAEEFG---PDWA 472 (587)
Q Consensus 401 ~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~-~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~---~~~~ 472 (587)
.+..++.+++..++..++.++..++..-+. ..+ ....+|.++.+ +.+.+..+++.|+.+|..++.... ....
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 999999988999999999988887642111 111 12356777776 566788999999999999987321 1222
Q ss_pred -hhchHHHHHhhhcCCcc----HHHHHHHHHHHHhhcc--cChH----HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHH
Q 007863 473 -MQHIVPQVLEMINNPHY----LYRMTILQAISLLAPV--MGSE----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSL 541 (587)
Q Consensus 473 -~~~~~~~l~~~l~~~~~----~~r~~a~~~l~~l~~~--~~~~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l 541 (587)
....+|.+.+++.+++. .++..++.+|.+++.. .+.+ ......+|.++.++.+.+..++..|+.+|..+
T Consensus 327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406 (458)
T ss_dssp HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 35689999998876543 4889999999998752 1222 12345789999999999999999999999999
Q ss_pred Hhhhch---HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863 542 IPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 542 ~~~~~~---~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~ 582 (587)
...-.. .......+|.|.+++...++.+|..|..||..+..
T Consensus 407 a~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 407 SARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 742111 23445679999999999999999999999999875
No 72
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.42 E-value=9.2e-12 Score=109.78 Aligned_cols=187 Identities=16% Similarity=0.109 Sum_probs=136.9
Q ss_pred hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCh---
Q 007863 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP--- 469 (587)
Q Consensus 396 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--- 469 (587)
+...|.+..++.++++.+|..++..+..++..-. ........+|.+..++.++++.+|..|+.+|+.++.....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 3455556666666666666666666666553211 0111234678888889999999999999999988742111
Q ss_pred hhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH---HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhc
Q 007863 470 DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 470 ~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~ 546 (587)
.......+|.+..++.+++..+|..++.++.+++...... ......+|.+..++.++++.+|..++.+|..++..-+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 1233568899999999999999999999999998633221 1245689999999999999999999999999986522
Q ss_pred h---HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863 547 Q---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 547 ~---~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~ 582 (587)
. .......++.|.+++.+++++||..|..+|..+++
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 2 13345689999999999999999999999998864
No 73
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.42 E-value=3.1e-14 Score=125.19 Aligned_cols=187 Identities=21% Similarity=0.226 Sum_probs=125.6
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHH
Q 007863 169 RQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN 248 (587)
Q Consensus 169 ~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 248 (587)
..++.|+++.||..++..+. . ..+..+++|+++.||..++..+ +. +.+..
T Consensus 56 ~~ll~d~~~~VR~~AA~~l~-------~--------~~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~~ 105 (244)
T 1lrv_A 56 VQYLADPFWERRAIAVRYSP-------V--------EALTPLIRDSDEVVRRAVAYRL-------PR--------EQLSA 105 (244)
T ss_dssp GGGTTCSSHHHHHHHHTTSC-------G--------GGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGGG
T ss_pred HHHhcCCCHHHHHHHHHhCC-------H--------HHHHHHccCcCHHHHHHHHHHC-------CH--------HHHHH
Confidence 45678888888888888642 1 1355678888888888877642 11 24566
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhc
Q 007863 249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS 328 (587)
Q Consensus 249 ~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~ 328 (587)
+++|++|.||..++..+ + .+.+..+++|+++.||..++..+ +. +.+..++
T Consensus 106 ll~D~d~~VR~~aA~~l-------~--------~~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l~ 155 (244)
T 1lrv_A 106 LMFDEDREVRITVADRL-------P--------LEQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFM 155 (244)
T ss_dssp TTTCSCHHHHHHHHHHS-------C--------TGGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTT
T ss_pred HHcCCCHHHHHHHHHhC-------C--------HHHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHHH
Confidence 77888888888887742 1 12355667888888888888632 11 2345677
Q ss_pred CCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcC
Q 007863 329 SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 408 (587)
Q Consensus 329 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~ 408 (587)
+|+++.||..++..+ +. +.+..+++|+++.||..++..+. . +.+..++.|
T Consensus 156 ~D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l~-------~--------~~L~~Ll~D 205 (244)
T 1lrv_A 156 RDEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRLR-------G--------DDLLELLHD 205 (244)
T ss_dssp TCSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHCC-------G--------GGGGGGGGC
T ss_pred cCCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhCC-------H--------HHHHHHHcC
Confidence 888888888887751 11 34556778888888888887641 1 234455788
Q ss_pred CCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 007863 409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVK 461 (587)
Q Consensus 409 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 461 (587)
++|.||..+.+.++ .+.+..+ +|++|.||..+...||
T Consensus 206 ~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 206 PDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp SSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred CCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 88888888877753 1334445 8888888888876654
No 74
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.40 E-value=5.9e-11 Score=124.07 Aligned_cols=282 Identities=14% Similarity=0.174 Sum_probs=216.7
Q ss_pred HHHHHHhHHHHHHhhC-HHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc----hHHHHHhHHHHHHHhcCCCC
Q 007863 297 RIAAAGKVTKICRILN-PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG----KDATIEQLLPIFLSLLKDEF 371 (587)
Q Consensus 297 r~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~ 371 (587)
+..++..+..+...-. .......++..+.+.+.++... ..|+..+..++..++ .+.+.-.++|.+...+.|..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~ 108 (986)
T 2iw3_A 31 RHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKD 108 (986)
T ss_dssp HHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCc
Confidence 4455555555544211 1111124667777777776555 888888988887664 23444456788899999999
Q ss_pred hHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhChhhH---HHHHHHHHHHHcCC
Q 007863 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLKD 447 (587)
Q Consensus 372 ~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d 447 (587)
..||.+|..++..+...+.++.. ..++|.+...+.+. .|..+..++..++.++... ++.+ .+.++|.+-.++.|
T Consensus 109 ~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d 186 (986)
T 2iw3_A 109 KEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWD 186 (986)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhccc
Confidence 99999999999999999988776 77899998888655 7999999999999999865 3332 47899999999999
Q ss_pred CchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhc--ccChHHHHHhHHHHHHhhcCC
Q 007863 448 KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP--VMGSEITCSQLLPVVINASKD 525 (587)
Q Consensus 448 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~--~~~~~~~~~~~l~~l~~~l~d 525 (587)
..++|..+|..++..++..+++.. .+.++|.+.+.+.+|+. +- .+++.++...= .+. ...+.-+.|.+.+.|++
T Consensus 187 ~k~~v~~~~~~~~~~~~~~~~n~d-~~~~~~~~~~~~~~p~~-~~-~~~~~l~~~tfv~~v~-~~~l~~~~p~l~r~l~~ 262 (986)
T 2iw3_A 187 TKKEVKAAATAAMTKATETVDNKD-IERFIPSLIQCIADPTE-VP-ETVHLLGATTFVAEVT-PATLSIMVPLLSRGLNE 262 (986)
T ss_dssp SSHHHHHHHHHHHHHHGGGCCCTT-TGGGHHHHHHHHHCTTH-HH-HHHHHHTTCCCCSCCC-HHHHHHHHHHHHHHHTS
T ss_pred CcHHHHHHHHHHHHHHHhcCCCcc-hhhhHHHHHHHhcChhh-hH-HHHHHhhcCeeEeeec-chhHHHHHHHHHhhhcc
Confidence 999999999999999999888764 36789999999999854 22 23444433221 111 23577899999999999
Q ss_pred CCccHHHHHHHHHHHHHhhhchH----HHHHhHHHHHHHh-cCCCCccHHHHHHHHHHHHHHHhhc
Q 007863 526 RVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVEL-SEDPDVDVRFFATQALQSKDQVMMS 586 (587)
Q Consensus 526 ~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l-~~d~~~~Vr~~a~~al~~l~~~~~~ 586 (587)
+...++..++-.+.++++-++.+ .|...++|.+.+. -+=.+|++|..|.+|++++.+..+.
T Consensus 263 ~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 263 RETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred CcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999988664 7778888888884 4567999999999999999887653
No 75
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.38 E-value=2.9e-08 Score=106.35 Aligned_cols=504 Identities=9% Similarity=0.011 Sum_probs=283.0
Q ss_pred cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccC----cCCcc---
Q 007863 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGLE--- 82 (587)
Q Consensus 10 ~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~----~~~~~--- 82 (587)
.++.++..+.+++++.|..|.+.|..+- ..+..|..+..++.. +.++++|..++..|.+.... ++.++
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q---~sp~aw~~~~~iL~~--s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~ 103 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLK---EHPDAWTRVDTILEF--SQNMNTKYYGLQILENVIKTRWKILPRNQCEG 103 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSS---CCSCHHHHHTCC-----CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHH---cCchHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHH
Confidence 6888999999999999999988886542 123456656665543 34678998888888665442 22222
Q ss_pred hHhhhhhHHHhhhcC-----chhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCC
Q 007863 83 YANVLLPPLETLCTV-----EETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAP 157 (587)
Q Consensus 83 ~~~~l~~~l~~l~~~-----~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~ 157 (587)
....++..+.+...+ .++.++.+.+.++..+++..-++.+ +.+++.+.+..... .........++..+.
T Consensus 104 LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W-p~fi~dLv~~~~~~-~~~~~~~L~IL~~L~---- 177 (1073)
T 3gjx_A 104 IKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW-PTFISDIVGASRTS-ESLCQNNMVILKLLS---- 177 (1073)
T ss_dssp HHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC-TTHHHHHHHHHHHC-HHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc-cHHHHHHHHHhCCC-HHHHHHHHHHHHHHH----
Confidence 234455555544333 2577788888899998887655543 34444444433211 111111222221111
Q ss_pred HHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccc-CchhHHHHHHHHHHHHhcc
Q 007863 158 EALKTELRTIYRQLCQDDM----PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKL 232 (587)
Q Consensus 158 ~~~~~~l~~~l~~l~~~~~----~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~ 232 (587)
+-..+.. ...|. ..+-+.+. ...+.+++++...++. .++.+...+.++++.+.+.
T Consensus 178 ------------EEV~d~~~~~l~~~r~------~~lk~~L~--~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sW 237 (1073)
T 3gjx_A 178 ------------EEVFDFSSGQITQVKA------KHLKDSMC--NEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNW 237 (1073)
T ss_dssp ------------HHHTTSHHHHBCHHHH------HHHHHHHH--HTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT
T ss_pred ------------HHHHhcccccccHHHH------HHHHHHHH--HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh
Confidence 1111110 01111 01111111 1134455555555533 4567788888999999888
Q ss_pred cChhhh-hhchHHHH-HHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHH-------HHh-------------cC
Q 007863 233 LEPQDC-VAHILPVI-VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAY-------VRL-------------LR 290 (587)
Q Consensus 233 ~~~~~~-~~~l~~~l-~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l-------~~~-------------l~ 290 (587)
++-... ...+++.+ ...+. ++..|..|+++|..++.. ..+.....+...+ ... ..
T Consensus 238 I~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k-~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~ 314 (1073)
T 3gjx_A 238 IPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGV-SVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGK 314 (1073)
T ss_dssp SCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHS-CSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCC
T ss_pred cCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccc
Confidence 876432 35577766 45554 567999999999998764 1111111111111 111 13
Q ss_pred CChHHHHHHHHHhHHHHHHhhCH------H--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch----------
Q 007863 291 DNEAEVRIAAAGKVTKICRILNP------E--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---------- 352 (587)
Q Consensus 291 d~~~~vr~~a~~~l~~l~~~~~~------~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---------- 352 (587)
+.+.+.-..-+..+..+++.... + ......+.++..+...++..+-..+...+..+...+-.
T Consensus 315 ~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~ 394 (1073)
T 3gjx_A 315 DDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASP 394 (1073)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 34444444445555554443211 1 11223344456666667777777777766665443210
Q ss_pred -----------------HHHHHhHHHHHHHhcCCCC--------------------h--HHHHHHHHHhHHhhhhhchhh
Q 007863 353 -----------------DATIEQLLPIFLSLLKDEF--------------------P--DVRLNIISKLDQVNQVIGIDL 393 (587)
Q Consensus 353 -----------------~~~~~~l~~~l~~~l~d~~--------------------~--~vr~~a~~~l~~i~~~~~~~~ 393 (587)
..+...+...+..-+.-++ . .++...-.++..+ ..++.+.
T Consensus 395 ~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~l-t~l~~~~ 473 (1073)
T 3gjx_A 395 LLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYL-THLDYVD 473 (1073)
T ss_dssp CTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHH-HHHCHHH
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHH-hcCCHHH
Confidence 0112223333333222110 0 1111222222222 2344444
Q ss_pred HhhhhHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHHcCCC-----chHHHHHHHHHHHHH
Q 007863 394 LSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDK-----VYSIRDAAANNVKRL 463 (587)
Q Consensus 394 ~~~~~~~~l~~~~~~--~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-----~~~vr~~a~~~l~~l 463 (587)
....+.+.+.+.+.. .+|..+.+++-+++.++.....+ .+.+.+++.+..+...+ ...++...+-.+|+.
T Consensus 474 ~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY 553 (1073)
T 3gjx_A 474 TEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQY 553 (1073)
T ss_dssp HHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhh
Confidence 445666777665543 56999999999999998766532 34566677666665433 234555555677777
Q ss_pred HHHhChh-hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH----------HHHHhHHHHHHhhcCCCCccHHH
Q 007863 464 AEEFGPD-WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE----------ITCSQLLPVVINASKDRVPNIKF 532 (587)
Q Consensus 464 ~~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~----------~~~~~~l~~l~~~l~d~~~~vR~ 532 (587)
.+-+... .+.+.++..+++.+.+++..++.+|+.++..+++.++.. .+.+.++..+.....+-.+.-..
T Consensus 554 ~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~ 633 (1073)
T 3gjx_A 554 PRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVH 633 (1073)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHH
Confidence 6654332 256778888888889999999999999999999877654 25566666666666666777788
Q ss_pred HHHHHHHHHHhhhchH
Q 007863 533 NVAKVLQSLIPIVDQS 548 (587)
Q Consensus 533 ~a~~~l~~l~~~~~~~ 548 (587)
...++++.++...+.+
T Consensus 634 ~lyeav~~vi~~~p~~ 649 (1073)
T 3gjx_A 634 TFYEAVGYMIGAQTDQ 649 (1073)
T ss_dssp HHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHhCCCc
Confidence 8899999998887754
No 76
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.38 E-value=2.4e-10 Score=111.04 Aligned_cols=245 Identities=13% Similarity=0.048 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHhC--CCCcccchHHHHHHhcC-----------CChHHHHHHHHHhHHHHHHhhCHH--HH--HHhHHH
Q 007863 260 MVANQLYELCEAVG--PEPTRSDVVPAYVRLLR-----------DNEAEVRIAAAGKVTKICRILNPE--LA--IQHILP 322 (587)
Q Consensus 260 ~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~-----------d~~~~vr~~a~~~l~~l~~~~~~~--~~--~~~~~~ 322 (587)
.|+.+|++++..-. ........++.+..++. +.++.++..|+.+|..++..-... .+ ...++|
T Consensus 167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp 246 (458)
T 3nmz_A 167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 246 (458)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence 67777777643200 00112246677777762 134779999999999998642211 22 234689
Q ss_pred HHhHhcCCCcHHHHHHHHHHHHhhhhhhc---hHHH-HHhHHHHHHHh-cCCCChHHHHHHHHHhHHhhhhh-c-hhhH-
Q 007863 323 CVKELSSDSSQHVRSALATVIMGMAPILG---KDAT-IEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVI-G-IDLL- 394 (587)
Q Consensus 323 ~l~~~~~d~~~~vr~~a~~~l~~l~~~~~---~~~~-~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~i~~~~-~-~~~~- 394 (587)
.+..++.+++..++..++.+|..++..-+ ...+ ....+|.+..+ +...++.++..++.+|..++..- + ...+
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999999999999999999999875311 1222 23467888886 56678899999999998887622 1 1122
Q ss_pred -hhhhHHHHHHHhcCCCc----HHHHHHHHHHHHHHHh--hChhh----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 007863 395 -SQSLLPAIVELAEDRHW----RVRLAIIEYIPLLASQ--LGVGF----FDDKLGALCMQWLKDKVYSIRDAAANNVKRL 463 (587)
Q Consensus 395 -~~~~~~~l~~~~~~~~~----~vr~~~~~~l~~l~~~--~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 463 (587)
....+|.+..++.+.+. .++..++..+..++.. .+.+. .....+|.+..++.+.+..+++.|+.+|..+
T Consensus 327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406 (458)
T ss_dssp HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34678999988876543 5888888888887752 12211 1123578888899999999999999999988
Q ss_pred HHHhChh----hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcc
Q 007863 464 AEEFGPD----WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV 505 (587)
Q Consensus 464 ~~~~~~~----~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~ 505 (587)
+.. ..+ ......+|.+.+++.+++..+|..|+.+|.++...
T Consensus 407 a~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 407 SAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 731 111 12356788888888888888899999999888764
No 77
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.38 E-value=5.5e-14 Score=123.63 Aligned_cols=188 Identities=20% Similarity=0.227 Sum_probs=135.9
Q ss_pred HHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHH
Q 007863 207 FEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYV 286 (587)
Q Consensus 207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 286 (587)
+..+++|+++.||..++..+ +. ..+..+++|+++.||..++..+ + .+.+.
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l-------~~--------~~l~~L~~D~~~~VR~~aA~~L-------~--------~~~L~ 104 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYS-------PV--------EALTPLIRDSDEVVRRAVAYRL-------P--------REQLS 104 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS-------CG--------GGGGGGTTCSSHHHHHHHHTTS-------C--------SGGGG
T ss_pred HHHHhcCCCHHHHHHHHHhC-------CH--------HHHHHHccCcCHHHHHHHHHHC-------C--------HHHHH
Confidence 34577899999999888753 11 1356788999999999998752 1 14577
Q ss_pred HhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHh
Q 007863 287 RLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL 366 (587)
Q Consensus 287 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 366 (587)
.+++|+++.||..++..+ .. +.+..+++|+++.||..++..+ +. +.+..+
T Consensus 105 ~ll~D~d~~VR~~aA~~l-------~~--------~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l 154 (244)
T 1lrv_A 105 ALMFDEDREVRITVADRL-------PL--------EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRF 154 (244)
T ss_dssp GTTTCSCHHHHHHHHHHS-------CT--------GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGT
T ss_pred HHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHH
Confidence 889999999999988853 11 2456778999999999998742 11 235577
Q ss_pred cCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcC
Q 007863 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK 446 (587)
Q Consensus 367 l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 446 (587)
++|+++.||..++..++ . +.+..+++|++|.||..++..+ +. +.+..++.
T Consensus 155 ~~D~d~~VR~~aa~~l~-------~--------~ll~~ll~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~ 204 (244)
T 1lrv_A 155 MRDEDRQVRKLVAKRLP-------E--------ESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLH 204 (244)
T ss_dssp TTCSCHHHHHHHHHHSC-------G--------GGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGG
T ss_pred HcCCCHHHHHHHHHcCC-------H--------HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHc
Confidence 88999999999888622 1 2233567899999999988763 11 34666788
Q ss_pred CCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHH
Q 007863 447 DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAIS 500 (587)
Q Consensus 447 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~ 500 (587)
|++|.||..++..++ .+.+..+ .|++|.||..+...++
T Consensus 205 D~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 205 DPDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp CSSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred CCCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 999999999888764 2445555 8899999988876543
No 78
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.34 E-value=2.5e-11 Score=106.94 Aligned_cols=188 Identities=13% Similarity=0.084 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh-
Q 007863 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP- 235 (587)
Q Consensus 160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~- 235 (587)
......+.+..+++++++.+|..++.+|+.++..-+. .......+|.+.++++++++.+|..|+.+|+.++..-+.
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 3455677888899999999999999999999843221 122234688888999999999999999999998753322
Q ss_pred --hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHh
Q 007863 236 --QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 310 (587)
Q Consensus 236 --~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 310 (587)
.......+|.+..++.++++.+|..++.+|++++..... .......+|.+.++++++++.+|..++.+|..++..
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 122345788889999999999999999999888742110 011234678888888888888888888888888763
Q ss_pred hCHH---HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhh
Q 007863 311 LNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMA 347 (587)
Q Consensus 311 ~~~~---~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~ 347 (587)
-... ......++.+.+++.+++..+|..++.++..++
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 1111 112345666666777777777777777766664
No 79
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.32 E-value=2.8e-09 Score=84.88 Aligned_cols=216 Identities=16% Similarity=0.134 Sum_probs=161.5
Q ss_pred HHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHH-hcCCCcHHHHHHHHHHHHHHHhhChhhHH
Q 007863 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFFD 434 (587)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~-~~~~~~~vr~~~~~~l~~l~~~~~~~~~~ 434 (587)
.+.++.-+..+|.|.-+.|+..+++.+..++..... ..+.++..+..+ -+++.........+.+|.++.. .++. .
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e--l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe~-v 105 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED--LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPEL-V 105 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG--GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHHH-H
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH--HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHHH-H
Confidence 345667777888888888888888888888765431 112233333333 3566667777888888888763 3433 4
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHh
Q 007863 435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQ 514 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~ 514 (587)
..++|.+.....-.++.+|.....+|+.+...... ....+...+..++.++|..-|.+++.+++.++.+. -.+...
T Consensus 106 ~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~--l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~--~~yv~P 181 (253)
T 2db0_A 106 KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM--LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS--FKYVNP 181 (253)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT--HHHHGG
T ss_pred HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC--ccccCc
Confidence 56889998888888999999999999999886433 24556777788899999999999999999888643 236778
Q ss_pred HHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863 515 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 515 ~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~ 582 (587)
.+|.+..++.|.+..||..++++|+.+...-+ .+...+...+.+ .+|+...|......+++.+.-
T Consensus 182 fLprL~aLL~D~deiVRaSaVEtL~~lA~~np--klRkii~~kl~e-~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 182 FLPRIINLLHDGDEIVRASAVEALVHLATLND--KLRKVVIKRLEE-LNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH--HHHHHHHHHHHH-CCCSCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHcCcchhhhHHHHHHHHHHHHcCH--HHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999987532 233344444444 499999999999999998864
No 80
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.31 E-value=1.8e-09 Score=113.11 Aligned_cols=277 Identities=13% Similarity=0.174 Sum_probs=208.5
Q ss_pred HHHHHHHHHHHhc-ccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCc----ccchHHHHHHhcCCCh
Q 007863 219 RLLAVEGCGALGK-LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT----RSDVVPAYVRLLRDNE 293 (587)
Q Consensus 219 r~~a~~~l~~l~~-~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~ 293 (587)
+..+...+..+.. ..........+...+.+.+.++... ..|+..++.++...+.... .-.++|.+...+.|..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~ 108 (986)
T 2iw3_A 31 RHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKD 108 (986)
T ss_dssp HHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCc
Confidence 3444444554433 2222222236788888888887554 8889999999876654221 1135788888889999
Q ss_pred HHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCC-cHHHHHHHHHHHHhhhhhhchH--HHHHhHHHHHHHhcCCC
Q 007863 294 AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS-SQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDE 370 (587)
Q Consensus 294 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~ 370 (587)
..||.+|..+...+...++++.. ..++|.+...+.+. .|..+.+++..+..++...+.. ...+.++|.+...+.|.
T Consensus 109 ~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~ 187 (986)
T 2iw3_A 109 KEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDT 187 (986)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccC
Confidence 99999999999999999999876 78889988877655 6999999999999998766422 24578999999999999
Q ss_pred ChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh-hC---hhhHHHHHHHHHHHHcC
Q 007863 371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ-LG---VGFFDDKLGALCMQWLK 446 (587)
Q Consensus 371 ~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~-~~---~~~~~~~l~~~l~~~l~ 446 (587)
-++|..++..++..++..+++.++ +..+|.+.+.+.+++. + -+++..++.. += ......-++|++.+.|.
T Consensus 188 k~~v~~~~~~~~~~~~~~~~n~d~-~~~~~~~~~~~~~p~~-~----~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~ 261 (986)
T 2iw3_A 188 KKEVKAAATAAMTKATETVDNKDI-ERFIPSLIQCIADPTE-V----PETVHLLGATTFVAEVTPATLSIMVPLLSRGLN 261 (986)
T ss_dssp SHHHHHHHHHHHHHHGGGCCCTTT-GGGHHHHHHHHHCTTH-H----HHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhcCCCcch-hhhHHHHHHHhcChhh-h----HHHHHHhhcCeeEeeecchhHHHHHHHHHhhhc
Confidence 999999999999999999998887 5689999999998843 2 2333333321 10 11123568999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHhChh----hhhhchHHHHHhhhc-CCccHHHHHHHHHHHHhhc
Q 007863 447 DKVYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAP 504 (587)
Q Consensus 447 d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~-~~~~~~r~~a~~~l~~l~~ 504 (587)
++...++..++-.+.++++..... .|.+.++|.+.+... -.++++|..+..++..+..
T Consensus 262 ~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 262 ERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp SSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred cCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999876554 266788888877543 3578899998888887754
No 81
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.21 E-value=1.6e-09 Score=102.11 Aligned_cols=211 Identities=12% Similarity=0.020 Sum_probs=118.3
Q ss_pred hHHHHHHHHHhHHhhhhhc-hh-hH--hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh---hhH-HHHHHHHHHH
Q 007863 372 PDVRLNIISKLDQVNQVIG-ID-LL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFF-DDKLGALCMQ 443 (587)
Q Consensus 372 ~~vr~~a~~~l~~i~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~-~~~l~~~l~~ 443 (587)
+.++..++.+|..++..-. .. .+ ....+|.+..++.+++..++..++..+..++..-+. ..+ ....+|.++.
T Consensus 98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~ 177 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 177 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence 4455555555555543211 11 11 123456666666655666666666665555432111 111 1123555555
Q ss_pred H-cCCCchHHHHHHHHHHHHHHHHhC---hhhh-hhchHHHHHhhhcCCcc----HHHHHHHHHHHHhhcc--cChH---
Q 007863 444 W-LKDKVYSIRDAAANNVKRLAEEFG---PDWA-MQHIVPQVLEMINNPHY----LYRMTILQAISLLAPV--MGSE--- 509 (587)
Q Consensus 444 ~-l~d~~~~vr~~a~~~l~~l~~~~~---~~~~-~~~~~~~l~~~l~~~~~----~~r~~a~~~l~~l~~~--~~~~--- 509 (587)
+ +++.+..+++.|+.+|..++.... .... ....+|.+.+++.+++. .++..++.++.+++.. .+.+
T Consensus 178 lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~ 257 (354)
T 3nmw_A 178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ 257 (354)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 4 345566777777777777764211 1112 34567777777665432 4677777777777642 1111
Q ss_pred H-HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch---HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863 510 I-TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 510 ~-~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~ 582 (587)
. .....+|.++.++.+.+..++..|+.+|..+...-.. .......+|.|.+++.+.+..+|..|..||..+..
T Consensus 258 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 258 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 1 1234677777777777777888888888777632111 12334567777777777777788888888777764
No 82
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.20 E-value=1.3e-07 Score=104.60 Aligned_cols=507 Identities=11% Similarity=-0.003 Sum_probs=266.6
Q ss_pred CcccHHHHHHHhcCc--cHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccC----cCC
Q 007863 7 PLYPIAVLIDELKND--DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGG 80 (587)
Q Consensus 7 ~~~~~~~l~~~l~s~--d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~----~~~ 80 (587)
.+..+..++..+.++ |++.|..|.+.|..+-+. |+ .+..+.-.|. ..+.+.++|..++..|.+.... ++.
T Consensus 9 ~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~-~~~~~~~~L~-~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~ 84 (1204)
T 3a6p_A 9 LCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CP-ICVPCGLRLA-EKTQVAIVRHFGLQILEHVVKFRWNGMSR 84 (1204)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CT-THHHHHHHHT-STTSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--ch-HHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence 334577777776766 778899999988776332 21 2333333332 2244678998888877665432 222
Q ss_pred cc---hHhhhhhHHHhhhc---CchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhcc
Q 007863 81 LE---YANVLLPPLETLCT---VEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYP 154 (587)
Q Consensus 81 ~~---~~~~l~~~l~~l~~---~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~ 154 (587)
+. ....++..+.+... +.++.+|.+...++..+++.-.++. ++.+++.+.++..++ ...+..+..++..+.+
T Consensus 85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-Wp~ll~~L~~~~~~~-~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-WPDMLIELDTLSKQG-ETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-CTTHHHHHHHHHHTC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-chHHHHHHHHHhcCC-HHHHHHHHHHHHHHHH
Confidence 11 12233333332211 1568999999999999998865544 456667766666542 2223333333333211
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHhccc-------------------C
Q 007863 155 SAPEALKTELRTIYRQLCQDDMPMVRRSA-ATNLGKFAATVEAAHLKSEIMSIFEELTQD-------------------D 214 (587)
Q Consensus 155 ~~~~~~~~~l~~~l~~l~~~~~~~vR~~a-~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d-------------------~ 214 (587)
-+... .+... .|..- -..+. . ..+.+++.+...+.+ +
T Consensus 163 ------------ev~~~-~~~~~-~r~~~l~~~l~---~------~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~ 219 (1204)
T 3a6p_A 163 ------------DVVTF-QTLPP-QRRRDIQQTLT---Q------NMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQA 219 (1204)
T ss_dssp ------------HHHTS-CCSCH-HHHHHHHHHHH---H------THHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHH
T ss_pred ------------HHccc-cchHH-HHHHHHHHHHH---H------HHHHHHHHHHHHHHHHHHHHhcccccccchhhhhh
Confidence 00011 11111 22211 11111 0 012222222222221 2
Q ss_pred chhHHHHHHHHHHHHhcccChhhhhh---chHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHH--------
Q 007863 215 QDSVRLLAVEGCGALGKLLEPQDCVA---HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVP-------- 283 (587)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~~~~~~~---~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~-------- 283 (587)
...++..+.+++.......+.....+ .+++.+..++.+ +.+|..|+++|..++...........++.
T Consensus 220 ~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~ 297 (1204)
T 3a6p_A 220 NCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMH 297 (1204)
T ss_dssp HHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHH
Confidence 34567777777777666655432222 378877777664 67899999999998863221000011111
Q ss_pred HHHHhc--------CCChHHHHHHHHHhHHHHHHhhCH----------HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHh
Q 007863 284 AYVRLL--------RDNEAEVRIAAAGKVTKICRILNP----------ELAIQHILPCVKELSSDSSQHVRSALATVIMG 345 (587)
Q Consensus 284 ~l~~~l--------~d~~~~vr~~a~~~l~~l~~~~~~----------~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~ 345 (587)
.+.... .|.+.++++..++.+..++..+.. ......+++.+..+..+++..+-..++..+..
T Consensus 298 ~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ 377 (1204)
T 3a6p_A 298 YILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGA 377 (1204)
T ss_dssp HHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHH
Confidence 122221 333466777777776666542211 12235688888888889988888888887776
Q ss_pred hhhhh--ch----HHHHHhHHHHHHH---hcCC---CC---------------------hHHHHHHHHHhHHhhhhhchh
Q 007863 346 MAPIL--GK----DATIEQLLPIFLS---LLKD---EF---------------------PDVRLNIISKLDQVNQVIGID 392 (587)
Q Consensus 346 l~~~~--~~----~~~~~~l~~~l~~---~l~d---~~---------------------~~vr~~a~~~l~~i~~~~~~~ 392 (587)
+.+.. +. ..+...+++.+.. -+.- .+ .+.|......+..++...+.
T Consensus 378 ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~- 456 (1204)
T 3a6p_A 378 LFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPK- 456 (1204)
T ss_dssp HHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHH-
T ss_pred HHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHH-
Confidence 65443 11 1233445555521 1111 00 12344444444444433322
Q ss_pred hHhhhhHHHHHHHhcC-------------------------CCcHHHHHHHHHHHHHHHhh---C--hh---hHHHHHHH
Q 007863 393 LLSQSLLPAIVELAED-------------------------RHWRVRLAIIEYIPLLASQL---G--VG---FFDDKLGA 439 (587)
Q Consensus 393 ~~~~~~~~~l~~~~~~-------------------------~~~~vr~~~~~~l~~l~~~~---~--~~---~~~~~l~~ 439 (587)
.....+.+.+...+.+ +.|....+....++.+...+ . .+ ...+.+++
T Consensus 457 ~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~ 536 (1204)
T 3a6p_A 457 TSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQ 536 (1204)
T ss_dssp HHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHH
Confidence 2223444555443321 23444445444455444433 1 11 11233333
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHhChh-hhhhchHHHHHhhhcC------------CccHHHHHHHHHHHHhhccc
Q 007863 440 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLEMINN------------PHYLYRMTILQAISLLAPVM 506 (587)
Q Consensus 440 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~~------------~~~~~r~~a~~~l~~l~~~~ 506 (587)
.+... ...++.+|..++.+++.+...+... .+...++..++..+.+ .+..+|.+|+.++..++..+
T Consensus 537 ~ll~~-~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~ 615 (1204)
T 3a6p_A 537 MVLNF-DTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDY 615 (1204)
T ss_dssp HHHHC-CCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhC-CCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 32221 3457889999999999888765422 1334455555555544 23479999999999999877
Q ss_pred ChH--HHHHhHHHHHHhhcCCC---CccHHHHHHHHHHHHHhhhc
Q 007863 507 GSE--ITCSQLLPVVINASKDR---VPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 507 ~~~--~~~~~~l~~l~~~l~d~---~~~vR~~a~~~l~~l~~~~~ 546 (587)
+.. .+.+.+...+...+... ...-+.....++..+...++
T Consensus 616 ~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~ 660 (1204)
T 3a6p_A 616 PQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFK 660 (1204)
T ss_dssp HHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGC
T ss_pred hHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCC
Confidence 653 24566666666655432 35566667777777754443
No 83
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.18 E-value=4e-09 Score=99.40 Aligned_cols=214 Identities=12% Similarity=0.065 Sum_probs=154.5
Q ss_pred cHHHHHHHHHHHHhhhhhhc--hHHH--HHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhc---hhh-HhhhhHHHHH
Q 007863 332 SQHVRSALATVIMGMAPILG--KDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDL-LSQSLLPAIV 403 (587)
Q Consensus 332 ~~~vr~~a~~~l~~l~~~~~--~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~---~~~-~~~~~~~~l~ 403 (587)
+..+|..++.+|..++..-. +..+ ...++|.+..+|.+++++++..++.+|..++..-+ ... .....+|.+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 46788888888888874322 1112 13458889999998889999999999988875311 111 1235688888
Q ss_pred HH-hcCCCcHHHHHHHHHHHHHHHhh-C--hhhH-HHHHHHHHHHHcCCCch----HHHHHHHHHHHHHHHHh--Chhh-
Q 007863 404 EL-AEDRHWRVRLAIIEYIPLLASQL-G--VGFF-DDKLGALCMQWLKDKVY----SIRDAAANNVKRLAEEF--GPDW- 471 (587)
Q Consensus 404 ~~-~~~~~~~vr~~~~~~l~~l~~~~-~--~~~~-~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~~--~~~~- 471 (587)
++ ..+.+..++..++..+..++... + .... ....+|.+..++.+.+. ++++.|+.+|..++... +.+.
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 86 46678888888888888887622 1 1111 23467888888876544 59999999999888631 2221
Q ss_pred ---hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh---HHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhh
Q 007863 472 ---AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 472 ---~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~ 545 (587)
.....+|.+.+++.+++..++..|+.+|.+++..... .......+|.+..++.+.++.+|..|+.+|..+...-
T Consensus 257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 2355799999999999999999999999999842211 1124567899999999999999999999999998763
No 84
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.17 E-value=8.5e-08 Score=106.07 Aligned_cols=485 Identities=12% Similarity=0.047 Sum_probs=267.5
Q ss_pred hhHHHhhhc-CchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhh-cCCCCcchhhHHhhhhhhc----cCCCHHHH
Q 007863 88 LPPLETLCT-VEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLA-AGEWFTARVSSCGLFHVAY----PSAPEALK 161 (587)
Q Consensus 88 ~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~-~~~~~~~r~~a~~l~~~~~----~~~~~~~~ 161 (587)
...+....+ +.+..+|..|.+.|.++-+.- + .+......+. .+.+..+|..|...+.... ...+++.+
T Consensus 14 ~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p--~----~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k 87 (1204)
T 3a6p_A 14 VKAVTVMMDPNSTQRYRLEALKFCEEFKEKC--P----ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEK 87 (1204)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC--T----THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHH
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHHhCc--h----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 334444333 236778888888887765432 1 1111222222 3445667777776665542 33455544
Q ss_pred HHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccC
Q 007863 162 TELRTIYRQLCQ-------DDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE 234 (587)
Q Consensus 162 ~~l~~~l~~l~~-------~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 234 (587)
..+...+...+. +..+.||..++.++..++..--. ..++.+++.+.++++. ++..+..+..+|..+.+.+.
T Consensus 88 ~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~ 165 (1204)
T 3a6p_A 88 VYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVV 165 (1204)
T ss_dssp HHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHc
Confidence 444444443322 14689999999999999887432 4567777777777765 35567778888888765421
Q ss_pred h-----h-----------hhhhchHHHHHHhcCC-------------------CchHHHHHHHHHHHHHHHHhCCCCc--
Q 007863 235 P-----Q-----------DCVAHILPVIVNFSQD-------------------KSWRVRYMVANQLYELCEAVGPEPT-- 277 (587)
Q Consensus 235 ~-----~-----------~~~~~l~~~l~~~~~d-------------------~~~~vR~~a~~~l~~l~~~~~~~~~-- 277 (587)
. . ...+.+++.+...+.+ .+..++..+++++.......+....
T Consensus 166 ~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~ 245 (1204)
T 3a6p_A 166 TFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITA 245 (1204)
T ss_dssp TSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHT
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHh
Confidence 1 0 0112344444444432 2334666666666544332221110
Q ss_pred -ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC-HHHH---HHhH----HHHHhHhc--------CCCcHHHHHHHH
Q 007863 278 -RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN-PELA---IQHI----LPCVKELS--------SDSSQHVRSALA 340 (587)
Q Consensus 278 -~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~---~~~~----~~~l~~~~--------~d~~~~vr~~a~ 340 (587)
...+++.+..++.+ +++|.+|+.+|..+..... ++.. ...+ +..+.... .+.+..++...+
T Consensus 246 ~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~ 323 (1204)
T 3a6p_A 246 ENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLC 323 (1204)
T ss_dssp TTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHH
Confidence 12478888877775 5789999999999987443 2211 1111 11122221 233456777777
Q ss_pred HHHHhhhhhhc----------hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhc--hh-h---HhhhhHHHHHH
Q 007863 341 TVIMGMAPILG----------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--ID-L---LSQSLLPAIVE 404 (587)
Q Consensus 341 ~~l~~l~~~~~----------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~--~~-~---~~~~~~~~l~~ 404 (587)
+.+..++.... .......+++.+..++.+++..|-..++.....+.+... .. . +...+++.+..
T Consensus 324 ~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~ 403 (1204)
T 3a6p_A 324 QVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMT 403 (1204)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 77766653221 112245788899999998888888887776666654431 11 1 22333333311
Q ss_pred Hh------cCC---------------------CcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCC----------
Q 007863 405 LA------EDR---------------------HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD---------- 447 (587)
Q Consensus 405 ~~------~~~---------------------~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d---------- 447 (587)
.+ .+. -+..|+.....+..++...+ ....+.+.+.+...+.+
T Consensus 404 ~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p-~~~l~~v~~~l~~~l~~~l~~~~~~~~ 482 (1204)
T 3a6p_A 404 NLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP-KTSFQMAGEWLKYQLSTFLDAGSVNSC 482 (1204)
T ss_dssp HHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHTCC---------
T ss_pred HHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHhhhhcccccccc
Confidence 01 000 13456666666666655432 22233344444333221
Q ss_pred ---------------CchHHHHHHHHHHHHHHHHh---C-hhhhhhchHHHHHhhh---cCCccHHHHHHHHHHHHhhcc
Q 007863 448 ---------------KVYSIRDAAANNVKRLAEEF---G-PDWAMQHIVPQVLEMI---NNPHYLYRMTILQAISLLAPV 505 (587)
Q Consensus 448 ---------------~~~~vr~~a~~~l~~l~~~~---~-~~~~~~~~~~~l~~~l---~~~~~~~r~~a~~~l~~l~~~ 505 (587)
+.|...++....+..+.+.+ . .+.....+.|.++..+ ...++.+|...+.+++.+...
T Consensus 483 ~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~ 562 (1204)
T 3a6p_A 483 SAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPF 562 (1204)
T ss_dssp --------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGG
T ss_pred cccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHH
Confidence 23344555555555554433 1 1111113455565542 334678999999999988886
Q ss_pred cCh-HHHHHhHHHHHHhhcCC------------CCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCC---Cc
Q 007863 506 MGS-EITCSQLLPVVINASKD------------RVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDP---DV 567 (587)
Q Consensus 506 ~~~-~~~~~~~l~~l~~~l~d------------~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~---~~ 567 (587)
+.. ..+...++..++..+.+ .+.++|..|+.++..++...+.. ++.+.+...+..+.... +.
T Consensus 563 ~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~ 642 (1204)
T 3a6p_A 563 VTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQ 642 (1204)
T ss_dssp GGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCH
T ss_pred HhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccH
Confidence 542 23566677767766555 23479999999999999887653 44455555555544322 24
Q ss_pred cHHHHHHHHHHHHHHH
Q 007863 568 DVRFFATQALQSKDQV 583 (587)
Q Consensus 568 ~Vr~~a~~al~~l~~~ 583 (587)
.=+.....|+..++..
T Consensus 643 ~e~~~L~eal~~ia~~ 658 (1204)
T 3a6p_A 643 MEKCALMEALVLISNQ 658 (1204)
T ss_dssp HHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4456666666666433
No 85
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.17 E-value=4.6e-08 Score=78.03 Aligned_cols=215 Identities=15% Similarity=0.156 Sum_probs=153.3
Q ss_pred HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHh-cCCCChHHHHHHHHHhHHhhhhhchhhHh
Q 007863 317 IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLS 395 (587)
Q Consensus 317 ~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~i~~~~~~~~~~ 395 (587)
.+.++..+..++.|.-|.|+..++..+..+++..+. -+. -++.-+..+ -+++.-..-+..+++++.++.. .++ ..
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e-l~e-pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe-~v 105 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-LYE-PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPE-LV 105 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG-GHH-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHH-HH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH-HHH-HHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHH-HH
Confidence 355677778888888899999999888888766542 111 112222222 3456666667778888877643 222 33
Q ss_pred hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhc
Q 007863 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH 475 (587)
Q Consensus 396 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 475 (587)
..++|.+..-..-.++++|......++.++...+ + ....+..-+..++.+++..-|.+|++.++.+.. .+.. +...
T Consensus 106 ~~vVp~lfanyrigd~kikIn~~yaLeeIaranP-~-l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe-n~~~-yv~P 181 (253)
T 2db0_A 106 KSMIPVLFANYRIGDEKTKINVSYALEEIAKANP-M-LMASIVRDFMSMLSSKNREDKLTALNFIEAMGE-NSFK-YVNP 181 (253)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH-H-HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT-TTHH-HHGG
T ss_pred HhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh-H-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-cCcc-ccCc
Confidence 5678888777666788899998888888887532 2 234455566778889998889888888776543 1222 4577
Q ss_pred hHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHH
Q 007863 476 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 542 (587)
Q Consensus 476 ~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~ 542 (587)
++|.+..++.|.+..||..++.++++++..-+. ...++-..+.-++|++..|....-.+|+.+.
T Consensus 182 fLprL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 182 FLPRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999874322 4455555666689999999999999888775
No 86
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.16 E-value=4.7e-10 Score=103.11 Aligned_cols=182 Identities=15% Similarity=0.156 Sum_probs=137.7
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHH-------HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh---
Q 007863 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD-------DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--- 471 (587)
Q Consensus 402 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~-------~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--- 471 (587)
+.+.+.+.+|..|..+++.+..+.......... ..+.+.+...+.|.+..|...++.++..++..++...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 456788999999999999987776543222111 1235667788899999999999999999987665431
Q ss_pred -----hhhchHHHHHhh-hcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhh
Q 007863 472 -----AMQHIVPQVLEM-INNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 472 -----~~~~~~~~l~~~-l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~ 545 (587)
+...++|.+.+- +.++...+|..+..++..++...... ..++..+...+++.+|.+|..++.+|..+...+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 235678877764 78888999999999998887654432 346677888899999999999999999999887
Q ss_pred chH-----HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863 546 DQS-----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 586 (587)
Q Consensus 546 ~~~-----~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~~ 586 (587)
|.. .....+++.+..++.|++++||..|..++..+...+|.
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 653 34456777788889999999999999999999988874
No 87
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.15 E-value=7.9e-10 Score=102.59 Aligned_cols=292 Identities=13% Similarity=0.038 Sum_probs=166.6
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhccc
Q 007863 154 PSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL 233 (587)
Q Consensus 154 ~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~ 233 (587)
+.++......++.-+.+++.+++...|+-.--++..+.+. + +... ...+.+.+-++++++.+|..|+++++.+..
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~-~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~-- 133 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-A-EDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD-- 133 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-S-SCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-H-HHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--
Confidence 3444445556777778899999999999887777766654 2 2233 567888888999999999999999998865
Q ss_pred ChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH
Q 007863 234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP 313 (587)
Q Consensus 234 ~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 313 (587)
.+..+.+.+.+.+.+.|+++.||+.|+-+...+....+ +. ...+++.+.+++.|.++.|..+|+..+..+... ++
T Consensus 134 --~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-e~-v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~ 208 (355)
T 3tjz_B 134 --STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-DV-VKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DR 208 (355)
T ss_dssp --TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-HH-HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CH
T ss_pred --HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-HH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-ch
Confidence 33577888999999999999999999988877754321 11 235788888899999999999999888888753 22
Q ss_pred HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhh
Q 007863 314 ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 393 (587)
Q Consensus 314 ~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~ 393 (587)
. ...++++.+.+. .-.++......++.+..++..- .....+.+.+.+...++..++.|...++.++..+.. .+...
T Consensus 209 ~-a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~ 284 (355)
T 3tjz_B 209 L-AVSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKE 284 (355)
T ss_dssp H-HHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC---------
T ss_pred H-HHHHHHHHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHH
Confidence 1 224444544331 1224555555666554444321 012345678888999999999999999999988754 22222
Q ss_pred HhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 007863 394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKR 462 (587)
Q Consensus 394 ~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 462 (587)
.....+.+..++.++++.+|..+++.+..+....+.- ....-.-+..++.|++..++.-|+.+|-+
T Consensus 285 -~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~--v~~~n~~ie~li~d~n~sI~t~Aittllk 350 (355)
T 3tjz_B 285 -LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA--VTACNLDLENLVTDANRSIATLAITTLLK 350 (355)
T ss_dssp ----CCCTHHHHHHSSSSSSHHHHHHCC-----------------------------------------
T ss_pred -HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH--HHHHHHHHHHHccCCcHhHHHHHHHHhhh
Confidence 2334566667788888899999999988887653321 23344456778889998888888776644
No 88
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.12 E-value=7.4e-07 Score=95.66 Aligned_cols=478 Identities=7% Similarity=0.022 Sum_probs=266.7
Q ss_pred CchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhcc----CCCHH----HHHHHHHHH
Q 007863 97 VEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYP----SAPEA----LKTELRTIY 168 (587)
Q Consensus 97 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~----~~~~~----~~~~l~~~l 168 (587)
++++..|+.|-+.|..+-+.- + .+..+..++ ..+.+..+|..|+..+..... ..+++ .++.+++.+
T Consensus 39 ~p~~~~r~qA~~~L~q~q~sp--~-aw~~~~~iL---~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l 112 (1073)
T 3gjx_A 39 HGEGAQQRMAQEVLTHLKEHP--D-AWTRVDTIL---EFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLI 112 (1073)
T ss_dssp CSSHHHHHHHHHHHHTSSCCS--C-HHHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCc--h-HHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHH
Confidence 345556777766665543321 1 111111111 123345666666665544322 34444 455566666
Q ss_pred HHhcCC-----CCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh--------
Q 007863 169 RQLCQD-----DMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-------- 235 (587)
Q Consensus 169 ~~l~~~-----~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-------- 235 (587)
.....+ .++.++...+.++..++...-+ ..++.+++-+...++.. +..+......|..+.+.+..
T Consensus 113 ~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P-~~Wp~fi~dLv~~~~~~-~~~~~~~L~IL~~L~EEV~d~~~~~l~~ 190 (1073)
T 3gjx_A 113 IKTSSDPTCVEKEKVYIGKLNMILVQILKQEWP-KHWPTFISDIVGASRTS-ESLCQNNMVILKLLSEEVFDFSSGQITQ 190 (1073)
T ss_dssp HHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHTTSHHHHBCH
T ss_pred HHHccCccccccchHHHHHHHHHHHHHHHHhCh-hhccHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhcccccccH
Confidence 555443 3578889999999998876432 23555566555555432 44556666777776655321
Q ss_pred h----------hhhhchHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCCCC-cccchHHHH-HHhcCCChHHHHHHHHH
Q 007863 236 Q----------DCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAY-VRLLRDNEAEVRIAAAG 302 (587)
Q Consensus 236 ~----------~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l-~~~l~d~~~~vr~~a~~ 302 (587)
. ...+.+++.+...++ ..+..+...+.++++.+...++-+. ....+++.+ ..++.+ ++.|.+|+.
T Consensus 191 ~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~~--~~~r~aA~d 268 (1073)
T 3gjx_A 191 VKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLNV--PMFRNVSLK 268 (1073)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSSS--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcCC--hHHHHHHHH
Confidence 0 112335555555543 4577788888899998877655322 234678877 577754 679999999
Q ss_pred hHHHHHHhhCHH--HHHHhHH----HHHhHhc-------------CCCcHHHHHHHHHHHHhhhhhhch------H--HH
Q 007863 303 KVTKICRILNPE--LAIQHIL----PCVKELS-------------SDSSQHVRSALATVIMGMAPILGK------D--AT 355 (587)
Q Consensus 303 ~l~~l~~~~~~~--~~~~~~~----~~l~~~~-------------~d~~~~vr~~a~~~l~~l~~~~~~------~--~~ 355 (587)
+|..+...-.++ .....++ ..+...+ .+.+...-...+..+..+++.... + ..
T Consensus 269 cL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~ 348 (1073)
T 3gjx_A 269 CLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREA 348 (1073)
T ss_dssp HHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHH
Confidence 999987641111 1111111 1111111 222233334444455444432211 1 11
Q ss_pred HHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh--------------------hHhhhhHHHHHHH-------hc-
Q 007863 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--------------------LLSQSLLPAIVEL-------AE- 407 (587)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--------------------~~~~~~~~~l~~~-------~~- 407 (587)
....+..+..+..-++.++-..+......+...+-.+ .....+.|.+.++ +.
T Consensus 349 l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~ 428 (1073)
T 3gjx_A 349 LMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAK 428 (1073)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 2223334455556667888777776666555433211 0111122222221 11
Q ss_pred --------CCC-----c--------HHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcC--CCchHHHHHHHHHHHHHH
Q 007863 408 --------DRH-----W--------RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK--DKVYSIRDAAANNVKRLA 464 (587)
Q Consensus 408 --------~~~-----~--------~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~ 464 (587)
++. + ..+...-+.+..+. .++.......+.+.+.+.+. ..+|..+++++-++|.++
T Consensus 429 P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIa 507 (1073)
T 3gjx_A 429 PEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSIS 507 (1073)
T ss_dssp SCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTT
T ss_pred CccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHH
Confidence 010 0 11222222333332 34444444555666655544 356999999999999997
Q ss_pred HHhChh---hhhhchHHHHHhhhcCC-----ccHHHHHHHHHHHHhhcccChH-HHHHhHHHHHHhhcCCCCccHHHHHH
Q 007863 465 EEFGPD---WAMQHIVPQVLEMINNP-----HYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVINASKDRVPNIKFNVA 535 (587)
Q Consensus 465 ~~~~~~---~~~~~~~~~l~~~l~~~-----~~~~r~~a~~~l~~l~~~~~~~-~~~~~~l~~l~~~l~d~~~~vR~~a~ 535 (587)
..+..+ .+...+++.+..+...+ ...++...+..+|...+.+... .+.+.++..++..+.++++.|...|+
T Consensus 508 g~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~ 587 (1073)
T 3gjx_A 508 GAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMAC 587 (1073)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHH
T ss_pred CcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 666542 24455666666554333 2345666668888888765432 37888888999999999999999999
Q ss_pred HHHHHHHhhhchH----------HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhh
Q 007863 536 KVLQSLIPIVDQS----------VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM 585 (587)
Q Consensus 536 ~~l~~l~~~~~~~----------~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~ 585 (587)
.++..++...+.. ++...++..+.....+=.++-.....+|++.+.+.++
T Consensus 588 ~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p 647 (1073)
T 3gjx_A 588 DTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQT 647 (1073)
T ss_dssp HHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCC
Confidence 9999998886543 2445555555555556566666777777777776554
No 89
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.10 E-value=1e-08 Score=90.42 Aligned_cols=180 Identities=13% Similarity=0.158 Sum_probs=130.8
Q ss_pred HHhcCCChHHHHHHHHHhHHHHHHhhCHHH--HHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH------HHHH
Q 007863 286 VRLLRDNEAEVRIAAAGKVTKICRILNPEL--AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD------ATIE 357 (587)
Q Consensus 286 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~------~~~~ 357 (587)
...+.+.++.-|..++..|.........+. ..+.+++.+.-.+.|+|..|-..+++.+..+...++.. ....
T Consensus 52 ~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~ 131 (266)
T 2of3_A 52 MSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVS 131 (266)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 333444456666666666655544321111 11224454443455889999888888888876655321 1235
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHH
Q 007863 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 437 (587)
Q Consensus 358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 437 (587)
.++|.+..-+.|....||..+-..+..+....++ ..+.+.+.+.+.+.||++|..++..+..+.+..|... ...
T Consensus 132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~~ 205 (266)
T 2of3_A 132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--LKS 205 (266)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GGG
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--ccc
Confidence 6889999999999999999998888887766554 3577777778899999999999999999999888763 335
Q ss_pred H---HHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh
Q 007863 438 G---ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW 471 (587)
Q Consensus 438 ~---~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 471 (587)
+ |.+..++.|++..||.+|+.++..+....|...
T Consensus 206 l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp GCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 6 888899999999999999999999999888774
No 90
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.09 E-value=2.4e-08 Score=83.49 Aligned_cols=216 Identities=13% Similarity=0.112 Sum_probs=168.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh-hh
Q 007863 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QD 237 (587)
Q Consensus 162 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~ 237 (587)
+..+..+..++.+.|+.++..+..+|+.+.+..++ ....+.+++-+..++.++++.|-..|.+++..+....+. +.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 44777888999999999999999999999998643 456678899999999999999999999999999988775 44
Q ss_pred hhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHH
Q 007863 238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAI 317 (587)
Q Consensus 238 ~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 317 (587)
....+...+.....+++.-.+..+++.++.+ ..-...+.+...+.+++++.+.+++.+++.++-+++...+.....
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl----kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~ 187 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL----QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL 187 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC----CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC----CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH
Confidence 5677889999999999999999999999987 222224568899999999999999999999999999877665555
Q ss_pred HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHH---HhHHHHHHHhc-CCCChHHHHHHHHH
Q 007863 318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI---EQLLPIFLSLL-KDEFPDVRLNIISK 381 (587)
Q Consensus 318 ~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~l-~d~~~~vr~~a~~~ 381 (587)
+.++.-+..++++.++.++.-|..++-.+...-=.+... ..+......+. ....|.+|..|-..
T Consensus 188 ~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v 255 (265)
T 3b2a_A 188 TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKV 255 (265)
T ss_dssp GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 677777888889999999999999998886542111111 12233333443 44556666655443
No 91
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.09 E-value=3.7e-09 Score=98.15 Aligned_cols=284 Identities=13% Similarity=0.037 Sum_probs=134.8
Q ss_pred hchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHh
Q 007863 240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQH 319 (587)
Q Consensus 240 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 319 (587)
..+++.+.+++..++...|+...-.+..++.. .++. . -....+.+=++++++-+|..|+++++.+.. +...+.
T Consensus 67 t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~-i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~ 139 (355)
T 3tjz_B 67 TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDV-I-IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQA 139 (355)
T ss_dssp HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCG-G-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHH-H-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHH
Confidence 34566667777778888888777766655543 1111 1 345566666677778888888888877743 223466
Q ss_pred HHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhH
Q 007863 320 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399 (587)
Q Consensus 320 ~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~ 399 (587)
+.+.+++.+.|.++.||.+|+-+...+....+ +..+.+++.+..++.|.++.|...++..+..+...- .. ....++
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p--e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-~~-a~~kLv 215 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCSF--DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-RL-AVSKMI 215 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH--HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-HH-HHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-hH-HHHHHH
Confidence 77788888888888888888887776664432 234567777888888888888888888887776431 11 112233
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHH
Q 007863 400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 479 (587)
Q Consensus 400 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 479 (587)
+.+.+. .-.++......++.+..++..- .......+.+.+..++++.+..|...|++++-.+.. .+.. ......+.
T Consensus 216 ~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~-~~~~a~~~ 291 (355)
T 3tjz_B 216 SKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAK-ELAPAVSV 291 (355)
T ss_dssp HHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-------------CCCT
T ss_pred HHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHH-HHHHHHHH
Confidence 322210 0112332333333332222210 011234567777777788888888888887766544 2211 12233444
Q ss_pred HHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHH
Q 007863 480 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540 (587)
Q Consensus 480 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~ 540 (587)
+..++.+++..+|..|+..+..+....+. .....-..+.++++|++..++.-|+-+|-.
T Consensus 292 L~~fLss~d~niryvaLr~L~~l~~~~P~--~v~~~n~~ie~li~d~n~sI~t~Aittllk 350 (355)
T 3tjz_B 292 LQLFCSSPKAALRYAAVRTLNKVAMKHPS--AVTACNLDLENLVTDANRSIATLAITTLLK 350 (355)
T ss_dssp HHHHHHSSSSSSHHHHHHCC-----------------------------------------
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHccCCcHhHHHHHHHHhhh
Confidence 44555666666777777777766654322 233445566667777777776666655543
No 92
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.08 E-value=7.6e-09 Score=94.69 Aligned_cols=171 Identities=18% Similarity=0.124 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHhhChh--hHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHhCh---hhhhhchHHHHHhhhc-
Q 007863 413 VRLAIIEYIPLLASQLGVG--FFDDKLGALCMQ-WLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMIN- 485 (587)
Q Consensus 413 vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~- 485 (587)
-|..++..+..++...... +.....+|.++. ++.++++.||..|+.+|+.++..... .......+|.+..++.
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR 135 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 4555555665555433211 111234677777 89999999999999999998853211 1233567888888887
Q ss_pred CCccHHHHHHHHHHHHhhcccCh--HHH-HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch---HHHHHhHHHHHH
Q 007863 486 NPHYLYRMTILQAISLLAPVMGS--EIT-CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLV 559 (587)
Q Consensus 486 ~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~ 559 (587)
+++..+|..|+++|++++..... +.+ ....+|.+..+++++++.+|..++.+|+.++..-.. ......++|.|.
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv 215 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH
Confidence 45778999999999999864433 122 346888999999999999999999999998765221 234457889999
Q ss_pred HhcCCCCccHHHHHHHHHHHHHHH
Q 007863 560 ELSEDPDVDVRFFATQALQSKDQV 583 (587)
Q Consensus 560 ~l~~d~~~~Vr~~a~~al~~l~~~ 583 (587)
.++.+++++||..|..|++.+...
T Consensus 216 ~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 216 ALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHcCCChhHHHHHHHHHHHHHhC
Confidence 998999999999999999988754
No 93
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.08 E-value=3e-08 Score=82.91 Aligned_cols=220 Identities=12% Similarity=0.070 Sum_probs=169.9
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch---hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC--hhhH
Q 007863 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFF 433 (587)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~--~~~~ 433 (587)
.+..+..++.|.++.++..++..+.++.+.... ....+.++|.+..+..++|.++-..+++++..+....+ ++.
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~- 112 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT- 112 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH-
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH-
Confidence 456788888999999999999999999877532 12346788888888999999999999999998887654 333
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHH
Q 007863 434 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCS 513 (587)
Q Consensus 434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~ 513 (587)
...+...+...+.+++.-++..|+..++.+ + .......+...+..++.+++.+++.+++.++.+++...+.....+
T Consensus 113 y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-k---v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~ 188 (265)
T 3b2a_A 113 FLKAAKTLVSLLESPDDMMRIETIDVLSKL-Q---PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLT 188 (265)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-C---BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGG
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhCcC-C---cccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHH
Confidence 356788888888999999999999999988 2 221246678888888888999999999999999998777555667
Q ss_pred hHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH---HHHHhHHHHHHHhc-CCCCccHHHHHHHHHHHHHHH
Q 007863 514 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELS-EDPDVDVRFFATQALQSKDQV 583 (587)
Q Consensus 514 ~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~l~-~d~~~~Vr~~a~~al~~l~~~ 583 (587)
.++..+-.+++.+++.++..|+.++..+...-=.+ +-...+.....++. ....|.+|..|...-..+-+.
T Consensus 189 ~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~~le~~ 262 (265)
T 3b2a_A 189 LILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSDLIDSV 262 (265)
T ss_dssp GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Confidence 78888888899999999999999999987652111 11234455555665 677888999988877666543
No 94
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.07 E-value=1.5e-08 Score=89.35 Aligned_cols=148 Identities=12% Similarity=0.100 Sum_probs=121.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh-----h-hHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh
Q 007863 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA-----H-LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 235 (587)
Q Consensus 162 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~-----~-~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (587)
+.+++.+.-.+.|.++.|-..+++.|..+...+.+. . -...++|.+..-++|..+.||..+-.++..+....++
T Consensus 86 Dll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~ 165 (266)
T 2of3_A 86 DLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP 165 (266)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH
Confidence 334555554456889999999999999988877542 1 2367899999999999999999999999888776553
Q ss_pred hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchH---HHHHHhcCCChHHHHHHHHHhHHHHHHhhC
Q 007863 236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV---PAYVRLLRDNEAEVRIAAAGKVTKICRILN 312 (587)
Q Consensus 236 ~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~---~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 312 (587)
..+++.+...+.++||++|..++..++.+....|.. ....+ |.+.+++.|++..||.+|+.++..+....|
T Consensus 166 ----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 166 ----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp ----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 457777778889999999999999999999988865 34567 999999999999999999999999999888
Q ss_pred HHH
Q 007863 313 PEL 315 (587)
Q Consensus 313 ~~~ 315 (587)
...
T Consensus 240 d~v 242 (266)
T 2of3_A 240 DQM 242 (266)
T ss_dssp THH
T ss_pred HHH
Confidence 764
No 95
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.06 E-value=2.1e-09 Score=101.49 Aligned_cols=256 Identities=11% Similarity=0.051 Sum_probs=171.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchH
Q 007863 164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL 243 (587)
Q Consensus 164 l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 243 (587)
+...+..-+-|+.|++|..|+-+|..+.+..+...-.. . ..+.+-.+|..++-++.++++.++++-
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-------~-~~N~DLAvRLLCVLALDRFGDYVSDqV------ 240 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-------I-RVDSKLFSKIYEILVTDKFNDFVDDRT------ 240 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-------C-CCCTTHHHHHHHHHHHBCCBBCSSSSC------
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-------c-cccHHHHHHHHHHHHhccccccccCee------
Confidence 66666677778999999999999999998765311000 1 112255678888888887777655321
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHH
Q 007863 244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC 323 (587)
Q Consensus 244 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 323 (587)
-..||++++++|+.+ ..++.+ ..++..++..+....|+||.+++-.|..+...+.. .+.+++.
T Consensus 241 ----------VAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~a 303 (800)
T 3oc3_A 241 ----------VAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRK 303 (800)
T ss_dssp ----------BCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHH
T ss_pred ----------eeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHH
Confidence 235999999999998 776655 34555555556778899999999988888333332 4778889
Q ss_pred HhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCC--hHHHHHHHHHhHHhhhhhchhhHhhhhHHH
Q 007863 324 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401 (587)
Q Consensus 324 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~ 401 (587)
+...++|.+..||..|+.++..++ .+ ...+.++..++..|.+.+ ..--......|+.++..-......+.++|.
T Consensus 304 VL~GL~D~DDDVRAVAAetLiPIA---~p-~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPR 379 (800)
T 3oc3_A 304 LVSLLSSPDEDIKLLSAELLCHFP---IT-DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKD 379 (800)
T ss_dssp HHHHTTCSSHHHHHHHHHHHTTSC---CS-STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGG
T ss_pred HHhhcCCcccHHHHHHHHHhhhhc---ch-hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHH
Confidence 999999999999999999998888 11 223455555555554321 122223333444444322111112367888
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 007863 402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVK 461 (587)
Q Consensus 402 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 461 (587)
+..++.++-..||.++++.+..+. . .+.+--++.+.+-+++.+|+..+.+.+.
T Consensus 380 L~PFLRHtITSVR~AVL~TL~tfL---~----~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 380 IFPCFTSPVPEVRTSILNMVKNLS---E----ESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp TGGGGTCSSHHHHHHHHHHTTTCC---C----HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHhhhcCCcHHHHHHHHHHHHHHH---h----hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 888889999999999998886655 1 2223334556677889999999988885
No 96
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.06 E-value=2.4e-08 Score=91.38 Aligned_cols=208 Identities=12% Similarity=0.053 Sum_probs=140.4
Q ss_pred HHHHHHHHHhHHhhhhhchh--hHhhhhHHHHHH-HhcCCCcHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHcC
Q 007863 373 DVRLNIISKLDQVNQVIGID--LLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLK 446 (587)
Q Consensus 373 ~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~ 446 (587)
+-|..++..|..++...... ......+|.+.. ++.+++..+|..++.+++.++..-. ...+....+|.++.++.
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 45666777777776654322 122356777777 8888888899988888888875321 11122345777778777
Q ss_pred -CCchHHHHHHHHHHHHHHHHhCh---hhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh---HHHHHhHHHHH
Q 007863 447 -DKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVV 519 (587)
Q Consensus 447 -d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~~l~~l 519 (587)
+++..+|..|+.+|+.++..... .+.....+|.+..++.+++..+|..+++++.+++..... ......++|.+
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L 214 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence 45788999999999998864332 123356888898888888999999999999998765221 12345688999
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHhhhchH---------HHHHhHHHHHHHhc-CCCCccHHHHHHHHHHHH
Q 007863 520 INASKDRVPNIKFNVAKVLQSLIPIVDQS---------VVEKSIRPCLVELS-EDPDVDVRFFATQALQSK 580 (587)
Q Consensus 520 ~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---------~~~~~i~~~l~~l~-~d~~~~Vr~~a~~al~~l 580 (587)
..++.++++.+|..++.+|+.+....... .+...+-+.+..+. .+...++...+.+.+.++
T Consensus 215 v~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 215 VALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTC 285 (296)
T ss_dssp HHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988763211 11222223333343 233467777777766654
No 97
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.02 E-value=1.1e-08 Score=94.02 Aligned_cols=183 Identities=11% Similarity=0.069 Sum_probs=123.2
Q ss_pred HHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH-------HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH----
Q 007863 285 YVRLLRDNEAEVRIAAAGKVTKICRILNPELA-------IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---- 353 (587)
Q Consensus 285 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-------~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---- 353 (587)
+.+.+.+.+|..|..++..+..+......... ...+.+.+.+.+.|+|..|...++.++..++..++..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 34556666666666666666655543222110 1234455667777888888888888877776654321
Q ss_pred ----HHHHhHHHHHH-HhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 007863 354 ----ATIEQLLPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (587)
Q Consensus 354 ----~~~~~l~~~l~-~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~ 428 (587)
.....++|.+. +.+.|..+.+|..+..++..++...+.. ..+++.+...+++.+|++|..++.++..+...+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 23345666655 4588888999988888887776544322 345666667788999999999999999988887
Q ss_pred Chhh-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh
Q 007863 429 GVGF-----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 470 (587)
Q Consensus 429 ~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 470 (587)
|... ..+.+++.+..++.|.+..||.+|..+++.+...+|..
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 7543 23456777788899999999999999999999888854
No 98
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.02 E-value=7e-09 Score=98.06 Aligned_cols=259 Identities=13% Similarity=0.008 Sum_probs=173.6
Q ss_pred CcccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCCcchHhh
Q 007863 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANV 86 (587)
Q Consensus 7 ~~~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~ 86 (587)
++.-++.|...|-++.|++|++|+-+|.++.+..|....+. ...+.+--+|....-+|.+|..++++..
T Consensus 172 PfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-------~~~N~DLAvRLLCVLALDRFGDYVSDqV---- 240 (800)
T 3oc3_A 172 VLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-------IRVDSKLFSKIYEILVTDKFNDFVDDRT---- 240 (800)
T ss_dssp GGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-------CCCCTTHHHHHHHHHHHBCCBBCSSSSC----
T ss_pred HHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-------ccccHHHHHHHHHHHHhccccccccCee----
Confidence 34457888899999999999999999999888776422221 1112244577777788899988887422
Q ss_pred hhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHH
Q 007863 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRT 166 (587)
Q Consensus 87 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~ 166 (587)
-..||+.++++|+.+ .+++++ ...+..++ .....+.|.+|..+.-.+..+...... .+.+++
T Consensus 241 ------------VAPVRETaAQtLGaL-~hLp~e--~~IL~qLV-~~l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~ 302 (800)
T 3oc3_A 241 ------------VAPVRDAAAYLLSRI-YPLIGP--NDIIEQLV-GFLDSGDWQVQFSGLIALGYLKEFVED--KDGLCR 302 (800)
T ss_dssp ------------BCHHHHHHHHHHHHH-TTTSCS--CCHHHHHT-TGGGCSCHHHHHHHHHHHHHTGGGCCC--HHHHHH
T ss_pred ------------eeehHHHHHHHHHHH-HhCChh--HHHHHHHH-hhcCCCCeeehhhhHHHHHHHHHHHHH--HHHHHH
Confidence 367999999999999 888766 23333333 334555678887776655555222222 678889
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCc--hhHHHHHHHHHHHHhcccChhhhhhchHH
Q 007863 167 IYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQ--DSVRLLAVEGCGALGKLLEPQDCVAHILP 244 (587)
Q Consensus 167 ~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 244 (587)
.+...++|++..||..|+.+|..++ .+...+.++..+...+.+-+ ...-......|+.+...-......+.++|
T Consensus 303 aVL~GL~D~DDDVRAVAAetLiPIA----~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVP 378 (800)
T 3oc3_A 303 KLVSLLSSPDEDIKLLSAELLCHFP----ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLK 378 (800)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHTTSC----CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGG
T ss_pred HHHhhcCCcccHHHHHHHHHhhhhc----chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHH
Confidence 9999999999999999999998887 22444555555555554332 22233344555555544332222347888
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHH
Q 007863 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVT 305 (587)
Q Consensus 245 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 305 (587)
.+..++.+.-..||.++.+++..+. ..+-+--++..++=+.+.+|+..+.+.+.
T Consensus 379 RL~PFLRHtITSVR~AVL~TL~tfL-------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 379 DIFPCFTSPVPEVRTSILNMVKNLS-------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GTGGGGTCSSHHHHHHHHHHTTTCC-------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHhhhcCCcHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 8888899999999999999887654 11223344455666777889888888775
No 99
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.96 E-value=6.9e-11 Score=94.75 Aligned_cols=121 Identities=16% Similarity=0.165 Sum_probs=90.0
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHh
Q 007863 435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQ 514 (587)
Q Consensus 435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~ 514 (587)
+.-.+.+...++|+++.+|..|+..|+.+ |.. -++.+.+.+.|+++.+|..++.+++.+.. ..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~----~~~-----~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~ 73 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRM----GDE-----AFEPLLESLSNEDWRIRGAAAWIIGNFQD--------ER 73 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSC----SST-----THHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HH
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHh----Cch-----HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HH
Confidence 44566777888999999999998888754 222 25888888899999999999999988763 34
Q ss_pred HHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007863 515 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSK 580 (587)
Q Consensus 515 ~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l 580 (587)
.++.+...++|+++.||..++.+|+.+.. ...+|.|.+++.|+++.||..|..+|+.+
T Consensus 74 a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 74 AVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 57778888889999999999999998853 35678888888899999999999988653
No 100
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.92 E-value=1e-10 Score=93.68 Aligned_cols=119 Identities=18% Similarity=0.116 Sum_probs=66.3
Q ss_pred chHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhH
Q 007863 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHI 320 (587)
Q Consensus 241 ~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 320 (587)
.-.+.+...++|+++.+|..|+..|+.+. . .. ++.+..+++|+++.||..|+.+|+.+.. +..
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----~----~~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a 74 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMG----D----EA-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERA 74 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCS----S----TT-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHH
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhC----c----hH-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHH
Confidence 34455566666666667766666655431 1 11 3666666666677777777766666532 223
Q ss_pred HHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHH
Q 007863 321 LPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384 (587)
Q Consensus 321 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 384 (587)
++.+..+++|+++.||..++.+++.+.. +..+|.+..+++|+++.||..++.+|++
T Consensus 75 ~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 75 VEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 4555555666677777777777666641 2234556666666666777776666654
No 101
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.91 E-value=3.7e-08 Score=83.54 Aligned_cols=139 Identities=21% Similarity=0.240 Sum_probs=111.2
Q ss_pred HHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHH-hcCCCchHHHHHHHHHHHHHHHHhCCCCcc
Q 007863 200 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTR 278 (587)
Q Consensus 200 ~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~ 278 (587)
.+.+++++..+.+++.++||..|+..++.. . ....+++.+.. +..|++|.||..++..++.++...+.+
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 567888999999999999999999988877 2 13568888887 888999999999999999998744432
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhh
Q 007863 279 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 349 (587)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 349 (587)
..++.+...++|++..||..|...+...+.........+.++|.+..+..|++..||.+....|..+++.
T Consensus 139 -~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 139 -KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 4678889999999999999999886543332111222356788899999999999999999999998865
No 102
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.76 E-value=6.5e-07 Score=95.31 Aligned_cols=386 Identities=9% Similarity=0.011 Sum_probs=214.3
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHhccc-CchhHHHHHHHHH
Q 007863 154 PSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA------AHLKSEIMSIFEELTQD-DQDSVRLLAVEGC 226 (587)
Q Consensus 154 ~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~------~~~~~~i~~~l~~l~~d-~~~~vr~~a~~~l 226 (587)
.+.++...+.+.+.+..++.+++..-..++++.++.+...... +..++.+.|++...+.+ -.++....=..++
T Consensus 499 rn~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i 578 (997)
T 1vsy_5 499 SGFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLA 578 (997)
T ss_dssp TTTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 4555667788999999999999999999999999998764322 45777889998888873 3443322222222
Q ss_pred HHHhcccChhhhhhchHHHHHHh-----cCCCchHHHHHHHHHHHHHHHHhCCCC-cccchHHHHHHhcCCChHHHHHHH
Q 007863 227 GALGKLLEPQDCVAHILPVIVNF-----SQDKSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYVRLLRDNEAEVRIAA 300 (587)
Q Consensus 227 ~~l~~~~~~~~~~~~l~~~l~~~-----~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a 300 (587)
..+....++. ....++..+..+ ....+.......+..|..+....+-.. ....++..+. +..+...||+..
T Consensus 579 ~~~~~~~Dpr-R~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~I 655 (997)
T 1vsy_5 579 WWLPAVVDLR-RSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAV 655 (997)
T ss_dssp HHHHHHSCGG-GCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHH
T ss_pred HHHhcCCChh-hhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHH
Confidence 3333332221 223344444221 111122222222333443433333211 1223333333 566778888888
Q ss_pred HHhHHHHHHhhC----------------------------HHHHHHhHH---HHHhHhcC---C--C-----cH--HHHH
Q 007863 301 AGKVTKICRILN----------------------------PELAIQHIL---PCVKELSS---D--S-----SQ--HVRS 337 (587)
Q Consensus 301 ~~~l~~l~~~~~----------------------------~~~~~~~~~---~~l~~~~~---d--~-----~~--~vr~ 337 (587)
...|..+....- +..+.+.+. ..+...-. + + +. ..-.
T Consensus 656 g~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~k 735 (997)
T 1vsy_5 656 AKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTS 735 (997)
T ss_dssp HHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHH
T ss_pred HHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHH
Confidence 888877665431 011111111 11111111 0 1 11 1123
Q ss_pred HHHHHHHhhhhhhch---HHHHHh-HHHHHHHhcCCCCh-HHHHH-HHHHhHHhhhhhchhhHhhhhHHHHHHHhc-CCC
Q 007863 338 ALATVIMGMAPILGK---DATIEQ-LLPIFLSLLKDEFP-DVRLN-IISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRH 410 (587)
Q Consensus 338 ~a~~~l~~l~~~~~~---~~~~~~-l~~~l~~~l~d~~~-~vr~~-a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~-~~~ 410 (587)
+++..+......... ..+... ++|.+..+.++.+. ++... +..++..+....-.....+.++..+.+... +++
T Consensus 736 Tvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~s 815 (997)
T 1vsy_5 736 TIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSS 815 (997)
T ss_dssp HHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCS
T ss_pred HHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCc
Confidence 344333333221111 112222 56666666555543 44444 444455554333233333445555555555 679
Q ss_pred cHHHHHHHHHHHHHHHh----hChhhHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhc
Q 007863 411 WRVRLAIIEYIPLLASQ----LGVGFFDDKLGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN 485 (587)
Q Consensus 411 ~~vr~~~~~~l~~l~~~----~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~ 485 (587)
| .|..++..+..+.-. ++.+. ...+...+..++.|+. .+||+.|..+|+.++...+.......++..+.+.+.
T Consensus 816 W-~R~~~L~~lq~~~f~n~f~l~~~~-~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~ 893 (997)
T 1vsy_5 816 N-QTKLQLAFIQHFLSAELLQLTEEE-KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLD 893 (997)
T ss_dssp S-SHHHHHHHHHHHHHHHTTTSCTTH-HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSST
T ss_pred H-HHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9 999999988766531 12222 3578888999999999 999999999999998754232122334444444331
Q ss_pred C------------CccHHHHHHHHHHHHhhcccChH----HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhh
Q 007863 486 N------------PHYLYRMTILQAISLLAPVMGSE----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 486 ~------------~~~~~r~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~ 545 (587)
. .+...|.+|+-+|+++...++-. .+.+.++..+.....|+.+ ++.++-++++..-...
T Consensus 894 ~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH 968 (997)
T 1vsy_5 894 VNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVR 968 (997)
T ss_dssp TTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHT
T ss_pred hcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhcc
Confidence 1 12267889999999998765432 3566777777777888655 9999999999876654
No 103
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.70 E-value=1.4e-07 Score=79.99 Aligned_cols=139 Identities=16% Similarity=0.123 Sum_probs=111.6
Q ss_pred hhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHH-hcCCChHHHHHHHHHhHHHHHHhhCHHHHH
Q 007863 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVR-LLRDNEAEVRIAAAGKVTKICRILNPELAI 317 (587)
Q Consensus 239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 317 (587)
.+.++++...+.+++...||..|+..|+.. . ....+++.+.. +..|+.|.||+.+..+++.++...+++
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 567888889999999999999999987766 2 13568888887 778999999999999999998755554
Q ss_pred HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhh
Q 007863 318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388 (587)
Q Consensus 318 ~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~ 388 (587)
..++.+...+.|++..||+.++...-..+.........+.++|.+..+..|++..||.++.++|..+++.
T Consensus 139 -~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 139 -KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 2567888889999999999999886544433222333456889999999999999999999999998765
No 104
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.37 E-value=0.00017 Score=71.34 Aligned_cols=226 Identities=16% Similarity=0.204 Sum_probs=140.9
Q ss_pred cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH---H--HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc--
Q 007863 279 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL---A--IQHILPCVKELSSDSSQHVRSALATVIMGMAPILG-- 351 (587)
Q Consensus 279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~--~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-- 351 (587)
++-++.+..++++.+-.+|..+++.|..++..-+... + .+.-++.+..+++|+.+.+|..++-.+..+...-.
T Consensus 121 ~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~i 200 (651)
T 3grl_A 121 QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAI 200 (651)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHH
Confidence 4578899999999999999999999999998755431 1 13467889999999999999999999999876432
Q ss_pred -hHHHHHhHHHHHHHhcCCCCh----HHHHHHHHHhHHhhhhhchh--hHh-hhhHHHHHHHhcC----CCcHHHH--H-
Q 007863 352 -KDATIEQLLPIFLSLLKDEFP----DVRLNIISKLDQVNQVIGID--LLS-QSLLPAIVELAED----RHWRVRL--A- 416 (587)
Q Consensus 352 -~~~~~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~i~~~~~~~--~~~-~~~~~~l~~~~~~----~~~~vr~--~- 416 (587)
+-...+..++.+..++..+.. .|..-++..+..+...-... .+. ...+|.+..+++. ..|.-++ .
T Consensus 201 QklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~ 280 (651)
T 3grl_A 201 QKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNL 280 (651)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHH
Confidence 111234456666666665433 67777777777777553211 121 2345555555432 2354222 1
Q ss_pred --HHHHHHHHHHhhCh---------hhHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHHHHHhChh--hhh--------
Q 007863 417 --IIEYIPLLASQLGV---------GFFDDKLGALCMQWLKDK--VYSIRDAAANNVKRLAEEFGPD--WAM-------- 473 (587)
Q Consensus 417 --~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~--~~~-------- 473 (587)
++..+..+...-+. ......+++.+.+++..+ ...+|..|+.+++.+++..... .|.
T Consensus 281 ~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~ 360 (651)
T 3grl_A 281 HLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNP 360 (651)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSS
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCC
Confidence 22333333221111 111223556666665544 5689999999999988643221 121
Q ss_pred --hchHHHHHhhhcCC-ccHHHHHHHHHHHHhhc
Q 007863 474 --QHIVPQVLEMINNP-HYLYRMTILQAISLLAP 504 (587)
Q Consensus 474 --~~~~~~l~~~l~~~-~~~~r~~a~~~l~~l~~ 504 (587)
..++..+..++++. ...+|.+++.++..+..
T Consensus 361 ~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 361 PRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp CEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred CcChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 22444445555544 47899999999988764
No 105
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.35 E-value=0.00027 Score=69.99 Aligned_cols=300 Identities=14% Similarity=0.074 Sum_probs=175.9
Q ss_pred ccHHHHHHHhcC-ccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccccc--C-CchHHHHHHHHHhcccccCcCCc---
Q 007863 9 YPIAVLIDELKN-DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN--D-DDDEVLLAMAEELGVFIPYVGGL--- 81 (587)
Q Consensus 9 ~~~~~l~~~l~s-~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~--~-~~~~v~~~~~~~l~~~~~~~~~~--- 81 (587)
++|+.|++++.+ .-.+-|+.|+..|..+++.+..+ ....-+|.+.+.+ | ++.+....+.+.|-.+...-+..
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~-Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~ 99 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLE-VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVE 99 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTH-HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC------
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHH-hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccccc
Confidence 479999999985 57899999999999987665433 2233344444422 2 34466666667664432211110
Q ss_pred --------c----hH------hhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhh---Hh--hhhHHHHHHhhcCCC
Q 007863 82 --------E----YA------NVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQD---VV--EHFIPLVKRLAAGEW 138 (587)
Q Consensus 82 --------~----~~------~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~---~~--~~ll~~~~~l~~~~~ 138 (587)
+ +. +.-++.|..++..++..+|..+++.|..++..-+... +. +.-+|.+..+.+++.
T Consensus 100 ~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r 179 (651)
T 3grl_A 100 ENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR 179 (651)
T ss_dssp --------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS
T ss_pred ccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch
Confidence 0 11 2335667777889999999999999999998754421 21 234677888888888
Q ss_pred CcchhhHHhhhhhhccCCCHH----HHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHHHHhh--hhhHH-HHHHHH
Q 007863 139 FTARVSSCGLFHVAYPSAPEA----LKTELRTIYRQLCQDDM----PMVRRSAATNLGKFAATVEA--AHLKS-EIMSIF 207 (587)
Q Consensus 139 ~~~r~~a~~l~~~~~~~~~~~----~~~~l~~~l~~l~~~~~----~~vR~~a~~~l~~l~~~~~~--~~~~~-~i~~~l 207 (587)
..+|..++.++..+.+...+- ..+..++.+..++.... ..|-.-++..+..+.+.... ..+.+ ..+|.+
T Consensus 180 E~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L 259 (651)
T 3grl_A 180 EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRM 259 (651)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGG
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHH
Confidence 889999999998887766442 11233455555444332 36666777777777765321 11111 122333
Q ss_pred HHhcccCc----hh--HHH---HHHHHHHHHhcccCh---------hhhhhchHHHHHHhcCCC--chHHHHHHHHHHHH
Q 007863 208 EELTQDDQ----DS--VRL---LAVEGCGALGKLLEP---------QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYE 267 (587)
Q Consensus 208 ~~l~~d~~----~~--vr~---~a~~~l~~l~~~~~~---------~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~ 267 (587)
..+++.+. |. .-. .+..++..+...-.+ ......+++.+.+++... ...+|..|+.+++.
T Consensus 260 ~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~ 339 (651)
T 3grl_A 260 KPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSE 339 (651)
T ss_dssp GGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred HHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 33443221 11 111 133333333322111 112334666666665543 67899999999988
Q ss_pred HHHHhC------------CCCcccchHHHHHHhcCCC-hHHHHHHHHHhHHHHHH
Q 007863 268 LCEAVG------------PEPTRSDVVPAYVRLLRDN-EAEVRIAAAGKVTKICR 309 (587)
Q Consensus 268 l~~~~~------------~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~ 309 (587)
++..-. .....+.++..+..++.+. ...+|.+++.++..+..
T Consensus 340 ~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 340 VIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp HHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 765211 1111223555555666554 47889999999998876
No 106
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.29 E-value=2.3e-05 Score=83.65 Aligned_cols=378 Identities=9% Similarity=0.003 Sum_probs=201.4
Q ss_pred hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh------hhhhhchHHHHHHhcC-CCchHHHHHHHHHHHHHH
Q 007863 197 AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP------QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELC 269 (587)
Q Consensus 197 ~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~l~ 269 (587)
....+.+.+.+..+..|++..-...|++.++.+...... +..++.+.|.+.+.+. +-++.....=..++..+.
T Consensus 503 ~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~ 582 (997)
T 1vsy_5 503 ELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLP 582 (997)
T ss_dssp CCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 466788999999999998888888899998887654332 3466778999999888 445444333333344333
Q ss_pred HHhCCCCcccchHHHHHHhcC---C--C-hHHHHHHHHHhHHHHHHhhC---HHHHHHhHHHHHhHhcCCCcHHHHHHHH
Q 007863 270 EAVGPEPTRSDVVPAYVRLLR---D--N-EAEVRIAAAGKVTKICRILN---PELAIQHILPCVKELSSDSSQHVRSALA 340 (587)
Q Consensus 270 ~~~~~~~~~~~l~~~l~~~l~---d--~-~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~~~~d~~~~vr~~a~ 340 (587)
....+.. ...++..+.. ++ + . ..-.....+..|..+....+ ++ .+.++..+. ++++...||....
T Consensus 583 ~~~DprR-~~~L~e~l~~-~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~--~~~~l~~~~--l~h~y~~VRe~Ig 656 (997)
T 1vsy_5 583 AVVDLRR-SKTFFCHFIN-ADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD--VGKLFDELV--FDHPYDQVRQAVA 656 (997)
T ss_dssp HHSCGGG-CHHHHHHHTC-CCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC--CHHHHHHCC--SCCSCHHHHHHHH
T ss_pred cCCChhh-hHHHHHHHHH-hhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc--HHHHHHHHH--hCCChHHHHHHHH
Confidence 3322111 1123333311 11 1 1 11111111222222222211 11 133444444 7788899999999
Q ss_pred HHHHhhhhhhc---h-------------------------HHHHHhHHHHHHHhc---C---C--CChHHHHHH---HHH
Q 007863 341 TVIMGMAPILG---K-------------------------DATIEQLLPIFLSLL---K---D--EFPDVRLNI---ISK 381 (587)
Q Consensus 341 ~~l~~l~~~~~---~-------------------------~~~~~~l~~~l~~~l---~---d--~~~~vr~~a---~~~ 381 (587)
..+..+....- . ....+.+...+..+- . + +....+... ..+
T Consensus 657 ~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kT 736 (997)
T 1vsy_5 657 KLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTST 736 (997)
T ss_dssp HHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHH
T ss_pred HHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHH
Confidence 88876654321 0 111111111111110 0 1 000111111 112
Q ss_pred hHHhh-hhhchh------hHhhh-hHHHHHHHhcCCCc-HHHHH-HHHHHHHHHHhhChhhHHHHHHHHHHHHcC-CCch
Q 007863 382 LDQVN-QVIGID------LLSQS-LLPAIVELAEDRHW-RVRLA-IIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVY 450 (587)
Q Consensus 382 l~~i~-~~~~~~------~~~~~-~~~~l~~~~~~~~~-~vr~~-~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~ 450 (587)
+-... ..++.. .+... ++|.+..+.+.++. +.... +...+..++...-.....+.++..+..... +++|
T Consensus 737 vl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW 816 (997)
T 1vsy_5 737 IFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN 816 (997)
T ss_dssp HHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS
T ss_pred HHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH
Confidence 11111 111111 01111 44444444443332 33333 333344333322222223444444444444 6789
Q ss_pred HHHHHHHHHHHHHHHHh----ChhhhhhchHHHHHhhhcCCc-cHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCC
Q 007863 451 SIRDAAANNVKRLAEEF----GPDWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD 525 (587)
Q Consensus 451 ~vr~~a~~~l~~l~~~~----~~~~~~~~~~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d 525 (587)
+|..++..+..+.-.. +.+ -...+...+..++.|+. .+||+.|..+|+.+.+..+.......++..+.+.+..
T Consensus 817 -~R~~~L~~lq~~~f~n~f~l~~~-~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~ 894 (997)
T 1vsy_5 817 -QTKLQLAFIQHFLSAELLQLTEE-EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDV 894 (997)
T ss_dssp -SHHHHHHHHHHHHHHHTTTSCTT-HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTT
T ss_pred -HHHHHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 9999999987766421 222 13567888888899999 9999999999999987762321223444444444422
Q ss_pred ------------CCccHHHHHHHHHHHHHhhhchH----HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHH
Q 007863 526 ------------RVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV 583 (587)
Q Consensus 526 ------------~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~ 583 (587)
.+-..|.+++-+|+.++..++.. .+...++..|-...+|+.+ |+..+.++++.+-++
T Consensus 895 ~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrT 967 (997)
T 1vsy_5 895 NKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKV 967 (997)
T ss_dssp TSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHH
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhc
Confidence 11257788899999998876543 4556666677667788766 999999999987653
No 107
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=98.26 E-value=0.00028 Score=66.47 Aligned_cols=256 Identities=10% Similarity=0.079 Sum_probs=147.4
Q ss_pred chhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChH
Q 007863 215 QDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEA 294 (587)
Q Consensus 215 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~ 294 (587)
.+..++.|...+.++.+.++. ..+..+..+..+|.|.+..||..|++.|..+|.. .....+..++.++++..++
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~--l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~ 114 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPE--LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDS 114 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGG--GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCH
T ss_pred CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccch
Confidence 477788888888888888775 4566788888889999999999998888888754 2355688888888888887
Q ss_pred HHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc----hHHHHHhHHHHHHHhcCCC
Q 007863 295 EVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG----KDATIEQLLPIFLSLLKDE 370 (587)
Q Consensus 295 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~ 370 (587)
..+..+-++|..+.+. .+......++..+.. .++.+|..++..|..-...++ ..+....+...+.+.+.|-
T Consensus 115 ~E~~~V~~sL~sllk~-Dpk~tl~~lf~~i~~----~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DV 189 (507)
T 3u0r_A 115 AEFNLVNNALLSIFKM-DAKGTLGGLFSQILQ----GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDV 189 (507)
T ss_dssp HHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhc-ChHHHHHHHHHHHcc----cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccc
Confidence 7777777888777764 232222333333333 357888888887765443332 2334456677777888776
Q ss_pred ChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhc-----C-CCcHHHHHHHHHHHHH----HHhhChhhHHHHHHHH
Q 007863 371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-----D-RHWRVRLAIIEYIPLL----ASQLGVGFFDDKLGAL 440 (587)
Q Consensus 371 ~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~-----~-~~~~vr~~~~~~l~~l----~~~~~~~~~~~~l~~~ 440 (587)
..+==......|... +..+.-.-.+.+++.+.+... + .+...-...+.++... ++......|..++...
T Consensus 190 T~~EF~L~m~lL~~l-kl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~k 268 (507)
T 3u0r_A 190 TGEEFVLFMKILSGL-KSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQ 268 (507)
T ss_dssp CHHHHHHHHHHHHTS-GGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc-ccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHh
Confidence 432212222222211 111111112456666655432 1 2333222233333222 2222222333444443
Q ss_pred HHHHcCCCch-----HHHHHHHHHHHHHHHHhChhhhhhchHHHHHh
Q 007863 441 CMQWLKDKVY-----SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE 482 (587)
Q Consensus 441 l~~~l~d~~~-----~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ 482 (587)
++..+.+-.. +.+...+++++.++...|........++.+.+
T Consensus 269 IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~ 315 (507)
T 3u0r_A 269 VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFD 315 (507)
T ss_dssp TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHH
T ss_pred hccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHH
Confidence 4334433222 36778899999999888832223344444444
No 108
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=98.21 E-value=0.0014 Score=61.88 Aligned_cols=258 Identities=16% Similarity=0.144 Sum_probs=148.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCch
Q 007863 176 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSW 255 (587)
Q Consensus 176 ~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~ 255 (587)
++..++-|++.+..+.+.++ ...+..+..+..++.|++..||..|+..|..++.. ...+.+...|.++++..++
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP--~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~ 114 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFP--ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDS 114 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCG--GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCH
T ss_pred CHHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccch
Confidence 47888888888888887764 45666777777788888888888888888877765 3577788888888887777
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----HHHHhHHHHHhHhcCCC
Q 007863 256 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDS 331 (587)
Q Consensus 256 ~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~~~d~ 331 (587)
..+..+-++|-.+...-+ ...+-..+.++.. .+..+|..++.-|..-...++.+ .....+...+++.++|-
T Consensus 115 ~E~~~V~~sL~sllk~Dp----k~tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DV 189 (507)
T 3u0r_A 115 AEFNLVNNALLSIFKMDA----KGTLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDV 189 (507)
T ss_dssp HHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhcCh----HHHHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccc
Confidence 777777777776665311 1123333333333 35688888777776655554443 22344566667777665
Q ss_pred cHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhc------CCCChHHHHHHHHHhHHhhhhh----chhhHhh----h
Q 007863 332 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL------KDEFPDVRLNIISKLDQVNQVI----GIDLLSQ----S 397 (587)
Q Consensus 332 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~l~~i~~~~----~~~~~~~----~ 397 (587)
+..-=..+...+..+ +.++.....+.+++++.... .-.+++.-...+.++..-...+ ....+.. .
T Consensus 190 T~~EF~L~m~lL~~l-kl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~k 268 (507)
T 3u0r_A 190 TGEEFVLFMKILSGL-KSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQ 268 (507)
T ss_dssp CHHHHHHHHHHHHTS-GGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc-ccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHh
Confidence 533222333333222 12222223345666665542 2234554444444444444333 3333323 3
Q ss_pred hHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHc
Q 007863 398 LLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 445 (587)
Q Consensus 398 ~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 445 (587)
++|.+..+-.. +....+...++.+..++...+........++.+...+
T Consensus 269 IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L 317 (507)
T 3u0r_A 269 VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKL 317 (507)
T ss_dssp TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHH
T ss_pred hccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHH
Confidence 34433222221 2224677889999999988883333344455544443
No 109
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.07 E-value=4.8e-05 Score=66.27 Aligned_cols=145 Identities=14% Similarity=0.061 Sum_probs=101.1
Q ss_pred HHHHHHHcCCCch--HHHHHHHHHHHHHHHHhChh---hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh---H
Q 007863 438 GALCMQWLKDKVY--SIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---E 509 (587)
Q Consensus 438 ~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~ 509 (587)
+|.+.+++.++++ .++..|+.++..++...... ......+|.+.+++.+++..++..|+++|.+++..... .
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4566777777776 78888888888777543211 13355789999999888889999999999998753211 1
Q ss_pred HHHHhHHHHHHhhcC-CCCccHHHHHHHHHHHHHhhhch-HHHHHhHHHHHHHhcC-------C---------CCccHHH
Q 007863 510 ITCSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQ-SVVEKSIRPCLVELSE-------D---------PDVDVRF 571 (587)
Q Consensus 510 ~~~~~~l~~l~~~l~-d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~l~~-------d---------~~~~Vr~ 571 (587)
......+|.++.++. .++..++..++.+|..+...-.. ..+.+..+|.|..++. | .+.+|+.
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~ 169 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY 169 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHH
Confidence 224567888888887 46888999999888888654222 2334455777766432 1 2568999
Q ss_pred HHHHHHHHHHH
Q 007863 572 FATQALQSKDQ 582 (587)
Q Consensus 572 ~a~~al~~l~~ 582 (587)
+|..+|..++.
T Consensus 170 na~~~L~nLss 180 (233)
T 3tt9_A 170 NVTGCLRNMSS 180 (233)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999988864
No 110
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.03 E-value=0.00031 Score=61.18 Aligned_cols=185 Identities=16% Similarity=0.080 Sum_probs=116.6
Q ss_pred hHHHHHHHhcCCCc--HHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh--
Q 007863 398 LLPAIVELAEDRHW--RVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD-- 470 (587)
Q Consensus 398 ~~~~l~~~~~~~~~--~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-- 470 (587)
-+|.+.+++.++++ .++..+...+..++..-. ........+|.+..++.+++.++++.|+.+|..++......
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 35555555555555 555555555555543211 01112234688888888888999999999999887521111
Q ss_pred -hhhhchHHHHHhhhc-CCccHHHHHHHHHHHHhhcccC-hHHHHHhHHHHHHhhcC----------------CCCccHH
Q 007863 471 -WAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMG-SEITCSQLLPVVINASK----------------DRVPNIK 531 (587)
Q Consensus 471 -~~~~~~~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~~l~~l~~~l~----------------d~~~~vR 531 (587)
......+|.+.+++. .++..++..++.++.+++..-. ...+....+|.+..++. ..++.++
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~ 168 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIF 168 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHH
Confidence 123567888888886 4678899998888888875322 23344456677766542 1256899
Q ss_pred HHHHHHHHHHHhhh--chHHHH--HhHHHHHHHhc------CCCCccHHHHHHHHHHHHHH
Q 007863 532 FNVAKVLQSLIPIV--DQSVVE--KSIRPCLVELS------EDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 532 ~~a~~~l~~l~~~~--~~~~~~--~~i~~~l~~l~------~d~~~~Vr~~a~~al~~l~~ 582 (587)
.++..+|..+...- ....+. ..+++.|..++ .+.+...+.+++-+|..+..
T Consensus 169 ~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 169 YNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 99999999997531 112222 24566666653 34566788999999887753
No 111
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.79 E-value=0.049 Score=56.48 Aligned_cols=85 Identities=13% Similarity=0.111 Sum_probs=61.6
Q ss_pred hhhccccccccCCchHHHHHHHHHhcccccCcCCcc------hHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChh
Q 007863 47 KELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLE------YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ 120 (587)
Q Consensus 47 ~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~~------~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 120 (587)
..++|++..+.+.+.+.|..++.++.+++. +.. +...+.+++..++.|++..||.+|..+|++++..-+++
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~---~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ---DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc---CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 468898888777888999999999998875 222 12334456788889999999999999999998776654
Q ss_pred h----HhhhhHHHHHHhh
Q 007863 121 D----VVEHFIPLVKRLA 134 (587)
Q Consensus 121 ~----~~~~ll~~~~~l~ 134 (587)
. +...++|.+..+.
T Consensus 111 ~~~~l~~~~il~~L~~~l 128 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAA 128 (684)
T ss_dssp HHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHH
Confidence 3 2334555554443
No 112
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.75 E-value=0.021 Score=59.22 Aligned_cols=73 Identities=18% Similarity=0.182 Sum_probs=48.5
Q ss_pred hhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH---HH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 007863 123 VEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA---LK-TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA 196 (587)
Q Consensus 123 ~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~---~~-~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~ 196 (587)
...++|++..+ .+.+...|..|+..++.+....... .. +.+.+++..++.|++..||..++.+|+.++...+.
T Consensus 33 ~~~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 33 EDKILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp HHTTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred hhhHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence 45678877664 4566777888888887777532211 11 23445666778888888888888888888766543
No 113
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=97.38 E-value=0.074 Score=49.69 Aligned_cols=113 Identities=13% Similarity=0.070 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh---
Q 007863 159 ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--- 235 (587)
Q Consensus 159 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--- 235 (587)
...+.+++-+..+..|++..||+.+++.|...+.. ...+....++.+..+++|+++.|.+.++.+...+....-.
T Consensus 59 sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 59 TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456777777888888888888888888877653 3456677888888888888888888888777766532110
Q ss_pred ---------hhhhh---chHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC
Q 007863 236 ---------QDCVA---HILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 273 (587)
Q Consensus 236 ---------~~~~~---~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~ 273 (587)
+..|+ .+...+.....+.+..||..+++.+..++....
T Consensus 137 ~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS 186 (386)
T 3o2t_A 137 KSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLS 186 (386)
T ss_dssp HC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTS
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhC
Confidence 12222 234445556677889999999999998876543
No 114
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=97.18 E-value=0.11 Score=45.76 Aligned_cols=108 Identities=15% Similarity=0.223 Sum_probs=58.4
Q ss_pred HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhh-------c
Q 007863 318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-------G 390 (587)
Q Consensus 318 ~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~-------~ 390 (587)
+.+++.+..+..|++..+|...+..+.+.+.. +......+++.+..+++|+++.|.+.++.+...+.+.. +
T Consensus 52 ~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~ 129 (257)
T 3gs3_A 52 EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLM 129 (257)
T ss_dssp HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44555555555555555555555555554421 22233445555555555555555555555555444321 0
Q ss_pred h-----hhH---hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 007863 391 I-----DLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (587)
Q Consensus 391 ~-----~~~---~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 427 (587)
. +.. ...+-..+.....+.+..+|..+++++..+.-.
T Consensus 130 ~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~ 174 (257)
T 3gs3_A 130 EPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVL 174 (257)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHh
Confidence 0 111 122334455566778899999999999887743
No 115
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=97.12 E-value=0.13 Score=48.07 Aligned_cols=183 Identities=11% Similarity=0.096 Sum_probs=101.7
Q ss_pred HHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHH
Q 007863 374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIR 453 (587)
Q Consensus 374 vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr 453 (587)
.+...+..+.+++-.-.+ .+.+.++|.+..+..|++..+|..+++++...+.. ...+...+++.+..++.|+++.|.
T Consensus 41 ~Kl~~L~q~~EL~l~~dp-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~ 117 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDP-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVV 117 (386)
T ss_dssp HHHHHHHHHHHHHHTTCG-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 444455555554322222 23356666666666677777777777766666542 122235566666666677777777
Q ss_pred HHHHHHHHHHHHHh--------C------hhh-hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccC-----------
Q 007863 454 DAAANNVKRLAEEF--------G------PDW-AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG----------- 507 (587)
Q Consensus 454 ~~a~~~l~~l~~~~--------~------~~~-~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~----------- 507 (587)
+.++.+.+.++... + ..| ....+-..+..+..+.+..+|..+++++..+.....
T Consensus 118 K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~ 197 (386)
T 3o2t_A 118 KKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRR 197 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGG
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccc
Confidence 77776666655321 1 001 122333344445566678888888888877653110
Q ss_pred -h-H-------------------HHHHhHHHHHHhhcCCC--CccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHh
Q 007863 508 -S-E-------------------ITCSQLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL 561 (587)
Q Consensus 508 -~-~-------------------~~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l 561 (587)
. + .-...++..+++.+.++ ++..=..++.+|..+++.= +.+...++++|..+
T Consensus 198 ~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~R--P~~~~rIl~aL~~l 272 (386)
T 3o2t_A 198 QEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQR--PMFMSEVIQAYETL 272 (386)
T ss_dssp GTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHS--GGGHHHHHHHHHHH
T ss_pred cCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhc--HHHHHHHHHHHHhh
Confidence 0 0 11345677777777753 2333355677777776542 34456777777765
No 116
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=97.09 E-value=0.028 Score=61.32 Aligned_cols=169 Identities=8% Similarity=0.025 Sum_probs=106.1
Q ss_pred chHHHHHHhcCC----CchHHHHHHHHHHHHHHHHhCCC--Cccc----chHHHHHHhcCCChHHHHHHHHHhHHHHHHh
Q 007863 241 HILPVIVNFSQD----KSWRVRYMVANQLYELCEAVGPE--PTRS----DVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 310 (587)
Q Consensus 241 ~l~~~l~~~~~d----~~~~vR~~a~~~l~~l~~~~~~~--~~~~----~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 310 (587)
..+..+..++.+ .++.+|..+.-+++.++...... .... .+...+.+.+...+.+-+..++++|++++.
T Consensus 391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~- 469 (1056)
T 1lsh_A 391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ- 469 (1056)
T ss_dssp HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-
Confidence 344555555554 46789999999999888654321 1122 244444445556667778889999998865
Q ss_pred hCHHHHHHhHHHHHhHhcC-------CCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhc--CCCChHHHHHHHHH
Q 007863 311 LNPELAIQHILPCVKELSS-------DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL--KDEFPDVRLNIISK 381 (587)
Q Consensus 311 ~~~~~~~~~~~~~l~~~~~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~ 381 (587)
+..++.+.+++. +...++|.+|+.+|..+....+ ..+.+.+.+++ ...++++|.+|+..
T Consensus 470 -------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p-----~~v~~il~~i~~n~~e~~EvRiaA~~~ 537 (1056)
T 1lsh_A 470 -------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-----RKVQEIVLPIFLNVAIKSELRIRSCIV 537 (1056)
T ss_dssp -------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-----HHHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred -------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch-----HHHHHHHHHHhcCCCCChHHHHHHHHH
Confidence 234455555542 2356899999999988874321 23445566666 45678999999988
Q ss_pred hHHhhhhhchhhHhhhhHHHHHHHh-cCCCcHHHHHHHHHHHHHHHhhC
Q 007863 382 LDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLG 429 (587)
Q Consensus 382 l~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~ 429 (587)
|-.-.+. ..++..+...+ .+++..|+..+...+..+++.-.
T Consensus 538 Lm~t~P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~ 579 (1056)
T 1lsh_A 538 FFESKPS-------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN 579 (1056)
T ss_dssp HHHTCCC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHCcC-------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCC
Confidence 8654332 13444444433 45778887777777766665443
No 117
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=97.07 E-value=0.015 Score=63.42 Aligned_cols=163 Identities=12% Similarity=0.038 Sum_probs=101.8
Q ss_pred hhhHHHHHHHhcC----CCcHHHHHHHHHHHHHHHhhC------hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 007863 396 QSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 465 (587)
Q Consensus 396 ~~~~~~l~~~~~~----~~~~vr~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 465 (587)
..++..+..++.+ .++.+|..++-.++.++.... +....+.+...+...+...+.+-+..++++||++..
T Consensus 390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence 3455666666654 467788888888888776431 112245566667777777778888889999988753
Q ss_pred HhChhhhhhchHHHHHhhhcC-------CccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHH
Q 007863 466 EFGPDWAMQHIVPQVLEMINN-------PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL 538 (587)
Q Consensus 466 ~~~~~~~~~~~~~~l~~~l~~-------~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l 538 (587)
...++.+..++.. ...++|.+|+.++..+.... ++...+.+++.+.+ .+..+++|..|+..|
T Consensus 470 --------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p~~v~~il~~i~~n--~~e~~EvRiaA~~~L 538 (1056)
T 1lsh_A 470 --------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PRKVQEIVLPIFLN--VAIKSELRIRSCIVF 538 (1056)
T ss_dssp --------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHH
T ss_pred --------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-hHHHHHHHHHHhcC--CCCChHHHHHHHHHH
Confidence 3356666666532 23468899999999887532 22233344444433 446899999999888
Q ss_pred HHHHhhh-------------chHHHHHhHHHHHHHhcCCCCccH
Q 007863 539 QSLIPIV-------------DQSVVEKSIRPCLVELSEDPDVDV 569 (587)
Q Consensus 539 ~~l~~~~-------------~~~~~~~~i~~~l~~l~~d~~~~V 569 (587)
-...+.. .+..+.+.+...|..+.+..+|.-
T Consensus 539 m~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~ 582 (1056)
T 1lsh_A 539 FESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEF 582 (1056)
T ss_dssp HHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHCcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcch
Confidence 6543321 112444555666666665555543
No 118
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.95 E-value=0.18 Score=44.31 Aligned_cols=106 Identities=15% Similarity=0.233 Sum_probs=57.9
Q ss_pred hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh-------C
Q 007863 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF-------G 468 (587)
Q Consensus 396 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-------~ 468 (587)
+.+++.+..+..|++.++|+..++.+...+.. ...+....++.+..+++|+++.|.+.++.+.+.+++.. +
T Consensus 52 ~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~ 129 (257)
T 3gs3_A 52 EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLM 129 (257)
T ss_dssp HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44555555555555566666666655555432 22234455555555666666666666666655554421 1
Q ss_pred h-------hh-hhhchHHHHHhhhcCCccHHHHHHHHHHHHhh
Q 007863 469 P-------DW-AMQHIVPQVLEMINNPHYLYRMTILQAISLLA 503 (587)
Q Consensus 469 ~-------~~-~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~ 503 (587)
. .| ....+-..+..+..+.+..+|..+++++..+.
T Consensus 130 ~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 130 EPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 0 01 11223334444556677888888888888766
No 119
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.63 E-value=0.68 Score=38.44 Aligned_cols=141 Identities=13% Similarity=0.167 Sum_probs=86.1
Q ss_pred HHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcC------CCcHHHHHHHHHHHHHHHh--hChhhHHHHHHHHHHHH
Q 007863 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED------RHWRVRLAIIEYIPLLASQ--LGVGFFDDKLGALCMQW 444 (587)
Q Consensus 373 ~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~------~~~~vr~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~ 444 (587)
..|..|+..|..-. |- +.++|.+..++.+ .++..=...++.+..+... +.-+.+...++|.++.+
T Consensus 23 ~~r~~aL~sL~~D~---gL----~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC 95 (196)
T 4atg_A 23 DMKDIAIECLEKES---GL----QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC 95 (196)
T ss_dssp TTHHHHHHHHHHCS---SC----TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC---Ch----hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 34666666555432 22 3455555544322 2444434444444444432 23455667788888887
Q ss_pred cCC---CchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCC--ccHHHHHHHHHHHHhhcccChHHHHHhHHH
Q 007863 445 LKD---KVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNP--HYLYRMTILQAISLLAPVMGSEITCSQLLP 517 (587)
Q Consensus 445 l~d---~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~ 517 (587)
+-. ....+|+.|++.++.+++.+|... ....+...+.+.+.|+ .......|+..+..++. +.+..-++|
T Consensus 96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~----~~vr~~llP 171 (196)
T 4atg_A 96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK----NVVNTVIRE 171 (196)
T ss_dssp HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH----HHHHTHHHH
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH----HHHHHhhhc
Confidence 521 112899999999999999998753 4566777777777776 46778888888877654 444455667
Q ss_pred HHHhhcC
Q 007863 518 VVINASK 524 (587)
Q Consensus 518 ~l~~~l~ 524 (587)
.+-...+
T Consensus 172 ~l~~~~~ 178 (196)
T 4atg_A 172 HAEEYKR 178 (196)
T ss_dssp HHHHHHH
T ss_pred CHHHHHH
Confidence 7655543
No 120
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=94.57 E-value=1.7 Score=36.10 Aligned_cols=141 Identities=13% Similarity=0.181 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC------ChHHHHHHHHHhHHHHHHh--hCHHHHHHhHHHHHhHh
Q 007863 256 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD------NEAEVRIAAAGKVTKICRI--LNPELAIQHILPCVKEL 327 (587)
Q Consensus 256 ~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d------~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~~ 327 (587)
..|..|.+.|.. +..-..++|.|...+.+ .+...-...++....+... +.-+.+...++|.+..+
T Consensus 23 ~~r~~aL~sL~~-------D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC 95 (196)
T 4atg_A 23 DMKDIAIECLEK-------ESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC 95 (196)
T ss_dssp TTHHHHHHHHHH-------CSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-------CCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 347776665553 33356788888876543 2334444444555555442 22346667788887766
Q ss_pred cCC---CcHHHHHHHHHHHHhhhhhhch--HHHHHhHHHHHHHhcCCC--ChHHHHHHHHHhHHhhhhhchhhHhhhhHH
Q 007863 328 SSD---SSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGIDLLSQSLLP 400 (587)
Q Consensus 328 ~~d---~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~ 400 (587)
+-. ....+|..|++.++.++..++. ....+.+...+.+.+.|+ ......+|+.++..++ .+.....++|
T Consensus 96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG----~~~vr~~llP 171 (196)
T 4atg_A 96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS----KNVVNTVIRE 171 (196)
T ss_dssp HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC----HHHHHTHHHH
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH----HHHHHHhhhc
Confidence 521 1228999999999999988874 445667777777777765 5678888888888765 3444455668
Q ss_pred HHHHHhc
Q 007863 401 AIVELAE 407 (587)
Q Consensus 401 ~l~~~~~ 407 (587)
.+....+
T Consensus 172 ~l~~~~~ 178 (196)
T 4atg_A 172 HAEEYKR 178 (196)
T ss_dssp HHHHHHH
T ss_pred CHHHHHH
Confidence 7765543
No 121
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=93.83 E-value=1.2 Score=38.50 Aligned_cols=159 Identities=18% Similarity=0.219 Sum_probs=90.4
Q ss_pred ccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCCcchHhhhh
Q 007863 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLL 88 (587)
Q Consensus 9 ~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~ 88 (587)
..+..++..|.+++ .|..|+..|+.-. ...+.+-|.++.+. .+...+.+.+-.+.+.+..+. +
T Consensus 3 ~~i~qli~~L~~p~--~Re~AL~eLsk~R------e~~~~La~~LW~S~----Gtia~LLQEIisiYp~lspp~----L- 65 (268)
T 2fv2_A 3 EKIYQWINELSSPE--TRENALLELSKKR------ESVPDLAPMLWHSF----GTIAALLQEIVNIYPSINPPT----L- 65 (268)
T ss_dssp HHHHHHHHHTSSTT--THHHHHHHHHHHT------TTCTTHHHHHHHST----THHHHHHHHHHHTGGGBTTBC----C-
T ss_pred HHHHHHHHHhcCch--hHHHHHHHHHHhh------hccccHHHHHHhcc----CHHHHHHHHHHHHcccCCCcc----c-
Confidence 34667777777555 5999987776531 23467778887643 333333333333333332111 0
Q ss_pred hHHHhhhcCchhHHHH-HHHHHHHHHHhhcC------hhhHhhhhHHHHHHhhcCC-CCcchhhHHhhhhhhccCCCHHH
Q 007863 89 PPLETLCTVEETCVRD-KAVESLCRIGSQMR------EQDVVEHFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEAL 160 (587)
Q Consensus 89 ~~l~~l~~~~~~~vr~-~a~~~l~~l~~~~~------~~~~~~~ll~~~~~l~~~~-~~~~r~~a~~l~~~~~~~~~~~~ 160 (587)
......|- .|...++.++.+-. ..++--++.||+....++. ....|..+.+.++.+.+.-++++
T Consensus 66 --------t~~~SnRVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eV 137 (268)
T 2fv2_A 66 --------TAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEV 137 (268)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHH
T ss_pred --------CHHHHhHHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHH
Confidence 11122222 22223333443211 1123446778875433333 34578888999998887766653
Q ss_pred H-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 007863 161 K-----TELRTIYRQLCQDDMPMVRRSAATNLGKFAA 192 (587)
Q Consensus 161 ~-----~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~ 192 (587)
. .+++|++...++.++...|..|...+.++..
T Consensus 138 i~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 138 INFLLTTEIIPLCLRIMESGSELSKTVATFILQKILL 174 (268)
T ss_dssp HHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 3 4678889988888888888877777777653
No 122
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=92.76 E-value=7.1 Score=37.31 Aligned_cols=249 Identities=11% Similarity=0.103 Sum_probs=127.2
Q ss_pred CCchHHHHHHHHHHHHHHHH--hCC----CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh-CHHHH-HHhHHHH
Q 007863 252 DKSWRVRYMVANQLYELCEA--VGP----EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL-NPELA-IQHILPC 323 (587)
Q Consensus 252 d~~~~vR~~a~~~l~~l~~~--~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~~-~~~~~~~ 323 (587)
+.+|.--..+.+.|..+... +.. ......++--+..+++.+|++-|...-..|-.+-..+ +-..+ ...+-..
T Consensus 128 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~ni 207 (449)
T 2npp_B 128 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 207 (449)
T ss_dssp CTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56787777777777776643 211 1223346777888889999999988888887765533 22211 1222222
Q ss_pred HhHhcCCCc-HHHHHHHHHHHHhhhhhhc---hHHHHHhHHHHHHHhcCCCChH-HHHHHHHHhHHhhhhhchhhHhhhh
Q 007863 324 VKELSSDSS-QHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPD-VRLNIISKLDQVNQVIGIDLLSQSL 398 (587)
Q Consensus 324 l~~~~~d~~-~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~i~~~~~~~~~~~~~ 398 (587)
+.+...+.. ..=-..+++.++.+...+. +++....+...+..+.+...-. --.....++..+++.= ..+...+
T Consensus 208 f~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD--p~L~~~v 285 (449)
T 2npp_B 208 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD--STLTEPV 285 (449)
T ss_dssp HHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHC--GGGHHHH
T ss_pred HHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcC--cHhHHHH
Confidence 333322111 1111245566666665553 3344444445555565554322 1223334444433220 1112233
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHH---HHHHHHHcCCCchHHHHHHHHHHH--HHHHHhChhhhh
Q 007863 399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL---GALCMQWLKDKVYSIRDAAANNVK--RLAEEFGPDWAM 473 (587)
Q Consensus 399 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l---~~~l~~~l~d~~~~vr~~a~~~l~--~l~~~~~~~~~~ 473 (587)
+..+.+..--.+..-....+..+..+....++..+..-. ...+-.++.++...|-+.|+..+. .+...+.. ..
T Consensus 286 i~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~--n~ 363 (449)
T 2npp_B 286 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD--NA 363 (449)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT--TH
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHh--ch
Confidence 333333333344444556677777777777777665443 334446678888888888876653 11221111 12
Q ss_pred hchHHHHHhhh----c-CCccHHHHHHHHHHHHhhc
Q 007863 474 QHIVPQVLEMI----N-NPHYLYRMTILQAISLLAP 504 (587)
Q Consensus 474 ~~~~~~l~~~l----~-~~~~~~r~~a~~~l~~l~~ 504 (587)
..++|.+...+ . +=+..+|..+..++..+.+
T Consensus 364 ~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 364 AKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 399 (449)
T ss_dssp HHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred hhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 33455544432 1 1134577777766665543
No 123
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=92.70 E-value=1.8 Score=37.18 Aligned_cols=130 Identities=8% Similarity=-0.030 Sum_probs=80.7
Q ss_pred HHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007863 128 PLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEAAHLKSEIMSI 206 (587)
Q Consensus 128 ~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~ 206 (587)
.++.++-.+++...|..+..+++.......++ -++.+...+. .+++.+-...+.+++.+.... ...+.+.
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~----~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~~~ 128 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLE----EVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPTI 128 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHH----HHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHH----HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHHHH
Confidence 45555566666666777776666544333332 2333344432 456777776666566665432 1234556
Q ss_pred HHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 007863 207 FEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270 (587)
Q Consensus 207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~ 270 (587)
+...+.|++.-+|+.|+.++-. . ......+.+++.+.....|++..||++....|..++.
T Consensus 129 i~~W~~s~~~w~rR~ai~~~l~---~-~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k 188 (220)
T 2b6c_A 129 FALFYGAENFWNRRVALNLQLM---L-KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK 188 (220)
T ss_dssp HHHHTTCSSHHHHHHHHHTTTT---C-GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHH---H-HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 6678888888888887775522 1 1122345567777778888899999998888887764
No 124
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=92.67 E-value=5.7 Score=36.01 Aligned_cols=184 Identities=8% Similarity=0.040 Sum_probs=115.3
Q ss_pred hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-Chh-----hH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Q 007863 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVG-----FF--DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 467 (587)
Q Consensus 396 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~-~~~-----~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 467 (587)
..++..+...+..=+++.|+.+...+..+.+.- |.. .+ .+.++..+.....+++...- +...|..+++.-
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~--~G~mLRecir~e 154 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALN--CGIMLRECIRHE 154 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHH--HHHHHHHHHTSH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhH--HHHHHHHHHHhH
Confidence 456666666677777888888887777665432 111 11 14566667777665554322 212222222110
Q ss_pred --ChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh---HH---HHHhHHHHHHhhcCCCCccHHHHHHHHHH
Q 007863 468 --GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EI---TCSQLLPVVINASKDRVPNIKFNVAKVLQ 539 (587)
Q Consensus 468 --~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~~---~~~~~l~~l~~~l~d~~~~vR~~a~~~l~ 539 (587)
..-......+-.+++....++..+-.-|...+..+...... +. ..+.+...+..++.++++..|..+++.|+
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg 234 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 234 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 00001123344566788888998888888888777643221 11 24567777888999999999999999999
Q ss_pred HHHhhhchH-HH-----HHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863 540 SLIPIVDQS-VV-----EKSIRPCLVELSEDPDVDVRFFATQALQSKD 581 (587)
Q Consensus 540 ~l~~~~~~~-~~-----~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~ 581 (587)
.+.-.-.+. .. ...-+..+..++.|+..+|+.-|-..++.+.
T Consensus 235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFV 282 (341)
T 1upk_A 235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFV 282 (341)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeee
Confidence 997653322 11 1245778888999999999999988877653
No 125
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=92.60 E-value=6.8 Score=36.73 Aligned_cols=252 Identities=10% Similarity=0.077 Sum_probs=129.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHhC------CCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH-HHHH-HhHHH
Q 007863 251 QDKSWRVRYMVANQLYELCEAVG------PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-ELAI-QHILP 322 (587)
Q Consensus 251 ~d~~~~vR~~a~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~-~~~~~ 322 (587)
.+++|.--..+.+.|..+...-. +......++--+..+++.+|++-|...-..|-.+-..+.. ..+. ..+-.
T Consensus 94 ~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inn 173 (403)
T 3fga_B 94 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 173 (403)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 36678777777777776655311 1222334666677889999999998888877776443322 1111 22222
Q ss_pred HHhHhcCCCc-HHHHHHHHHHHHhhhhhhc---hHHHHHhHHHHHHHhcCCCChH-HHHHHHHHhHHhhhhhchhhHhhh
Q 007863 323 CVKELSSDSS-QHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPD-VRLNIISKLDQVNQVIGIDLLSQS 397 (587)
Q Consensus 323 ~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~i~~~~~~~~~~~~ 397 (587)
.+.+...+.. ..=-...++.++.+...+. +++....+...+..+.+...-. --.....++..+++.= ..+...
T Consensus 174 if~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKD--p~L~~~ 251 (403)
T 3fga_B 174 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD--STLTEP 251 (403)
T ss_dssp HHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHC--GGGHHH
T ss_pred HHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhC--chhHHH
Confidence 2223221111 1111245666777766653 2333334455555565554322 1233344444443221 111223
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHH---HHHHHHHcCCCchHHHHHHHHHHH--HHHHHhCh--h
Q 007863 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL---GALCMQWLKDKVYSIRDAAANNVK--RLAEEFGP--D 470 (587)
Q Consensus 398 ~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l---~~~l~~~l~d~~~~vr~~a~~~l~--~l~~~~~~--~ 470 (587)
++..+.+..--.+..-....+..+..+....+++.+..-. ...+-.++.++...|-+.|+..+. .+...+.. .
T Consensus 252 vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~ 331 (403)
T 3fga_B 252 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAA 331 (403)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHH
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHH
Confidence 3333333333345555556777777778777777665444 344446678889999888876652 11221111 1
Q ss_pred hhhhchHHHHHhhhcC-CccHHHHHHHHHHHHhhc
Q 007863 471 WAMQHIVPQVLEMINN-PHYLYRMTILQAISLLAP 504 (587)
Q Consensus 471 ~~~~~~~~~l~~~l~~-~~~~~r~~a~~~l~~l~~ 504 (587)
.+...++|.+.+.... =+..+|..+..++..+.+
T Consensus 332 ~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 332 KILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp HHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 1223333334332222 245677777776666543
No 126
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=92.50 E-value=1.1 Score=35.18 Aligned_cols=75 Identities=9% Similarity=0.115 Sum_probs=51.0
Q ss_pred hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH----HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH
Q 007863 474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 548 (587)
...+..+.+.+.+++..+...|+..+..+.+++|.... ...++..+.+++...++.||..++..+..+...+..+
T Consensus 41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 34555666667777777777788888888777776532 2345555555555567889999988888888776543
No 127
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=91.48 E-value=2.3 Score=36.90 Aligned_cols=159 Identities=10% Similarity=-0.045 Sum_probs=90.5
Q ss_pred HHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHhhhhhHHHHHHH
Q 007863 128 PLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA-TNLGKFAATVEAAHLKSEIMSI 206 (587)
Q Consensus 128 ~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~-~~l~~l~~~~~~~~~~~~i~~~ 206 (587)
.++.++-.+++...|..|+.++.......+++....+-.++. ..+++.+-...+ ..++.+....+. ...+.
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l~~~~~~l~---~~~nWd~~D~~a~~~~g~~~~~~p~-----~~~~~ 135 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINETHIPFLEELIV---TKSWWDSVDSIVPTFLGDIFLKHPE-----LISAY 135 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGHHHHHHHHT---SSCCHHHHHHHTTTHHHHHHHHCGG-----GGGGT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc---cCCChHHHHHhhHHHHHHHHHHCHH-----HHHHH
Confidence 455566666655667667766654444444443333332222 356677665553 556666554221 13345
Q ss_pred HHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHH
Q 007863 207 FEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYV 286 (587)
Q Consensus 207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 286 (587)
+...+.|++.-+|+.|+.++-... .......+.+.+.....|++..||.+...+|..++.. .++.+.+.+.
T Consensus 136 l~~W~~s~~~w~rR~ai~~~l~~~----~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-----~p~~v~~fl~ 206 (232)
T 3jxy_A 136 IPKWIASDNIWLQRAAILFQLKYK----QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT-----NPDVVWEYVQ 206 (232)
T ss_dssp HHHHHHSSCHHHHHHHHHTTTTCG----GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-----CHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHH----hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-----CHHHHHHHHH
Confidence 566788888888888876652211 1222345667777888899999999999988877643 1334555555
Q ss_pred HhcCCChHHHHHHHHHhHH
Q 007863 287 RLLRDNEAEVRIAAAGKVT 305 (587)
Q Consensus 287 ~~l~d~~~~vr~~a~~~l~ 305 (587)
+. .-+.-.+..|++.|.
T Consensus 207 ~~--~l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 207 NN--ELAPLSKREAIKHIK 223 (232)
T ss_dssp HS--CCCHHHHHHHTTTTH
T ss_pred HC--CCCHHHHHHHHHhcc
Confidence 43 223344444554443
No 128
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=91.42 E-value=10 Score=36.24 Aligned_cols=250 Identities=10% Similarity=0.049 Sum_probs=131.4
Q ss_pred CCcHHHHHHHHHHHHhhhhh--hc----hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh--hHhhhhHHH
Q 007863 330 DSSQHVRSALATVIMGMAPI--LG----KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPA 401 (587)
Q Consensus 330 d~~~~vr~~a~~~l~~l~~~--~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~ 401 (587)
|++|.--..+.+.+..+... +. +..+...++--+..++..+++.-|......|..+...+..- .+...+-..
T Consensus 128 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~ni 207 (449)
T 2npp_B 128 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI 207 (449)
T ss_dssp CTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45565555555555554322 21 22222345555667777788888888777777776554211 122222233
Q ss_pred HHHHhcC-CCcHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHcCCCchH-HHHHHHHHHHHHHHHhChhhhhhch
Q 007863 402 IVELAED-RHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYS-IRDAAANNVKRLAEEFGPDWAMQHI 476 (587)
Q Consensus 402 l~~~~~~-~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~~ 476 (587)
+.+.+.+ ....--..+++.++.+.+.+. .+.....+...++.+.+..... --..-..++..+++.- +. ....+
T Consensus 208 f~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD-p~-L~~~v 285 (449)
T 2npp_B 208 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-ST-LTEPV 285 (449)
T ss_dssp HHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHC-GG-GHHHH
T ss_pred HHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcC-cH-hHHHH
Confidence 3333322 222222356677777766553 1222233344444444333221 2223344444444321 11 23444
Q ss_pred HHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHH---HhHHHHHHhhcCCCCccHHHHHHHHHH--HHHhhhchHHHH
Q 007863 477 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC---SQLLPVVINASKDRVPNIKFNVAKVLQ--SLIPIVDQSVVE 551 (587)
Q Consensus 477 ~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~---~~~l~~l~~~l~d~~~~vR~~a~~~l~--~l~~~~~~~~~~ 551 (587)
+..+++.=--.+.......+.-+..+.+.++++.+. ..+...+..++++++..|-..|+..+. .+...+. ...
T Consensus 286 i~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~--~n~ 363 (449)
T 2npp_B 286 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLIS--DNA 363 (449)
T ss_dssp HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHH--TTH
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHH--hch
Confidence 555544433345555667788888888888877654 446666778889988888888876653 1222211 112
Q ss_pred HhHHHHHHHhc-----CCCCccHHHHHHHHHHHHHHH
Q 007863 552 KSIRPCLVELS-----EDPDVDVRFFATQALQSKDQV 583 (587)
Q Consensus 552 ~~i~~~l~~l~-----~d~~~~Vr~~a~~al~~l~~~ 583 (587)
..++|.+...+ +-=+..||..|..++..+.++
T Consensus 364 ~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 364 AKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp HHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTT
T ss_pred hhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 34555554421 222457999999999877654
No 129
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=91.33 E-value=3.8 Score=35.48 Aligned_cols=130 Identities=12% Similarity=0.063 Sum_probs=74.3
Q ss_pred HHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhc-CCCchHHHHHH-HHHHHHHHHHhCCCCcccchHH
Q 007863 206 IFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMV-ANQLYELCEAVGPEPTRSDVVP 283 (587)
Q Consensus 206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~d~~~~vR~~a-~~~l~~l~~~~~~~~~~~~l~~ 283 (587)
++..+..++..+.|..|+..+....+...++ .++.+...+ ...+|.+--.. ...++.+.... +..+.+
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~-----~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~-----p~~~~~ 134 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHINET-----HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKH-----PELISA 134 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG-----GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHC-----GGGGGG
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHC-----HHHHHH
Confidence 4445556666677887777776544433322 222333332 34567765544 35566665541 222556
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhh
Q 007863 284 AYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 349 (587)
Q Consensus 284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 349 (587)
.+.....|++.-+|..++..+-..... .. ...+++.+...+.|++..||.+...+|..++..
T Consensus 135 ~l~~W~~s~~~w~rR~ai~~~l~~~~~---~d-~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~ 196 (232)
T 3jxy_A 135 YIPKWIASDNIWLQRAAILFQLKYKQK---MD-EELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT 196 (232)
T ss_dssp THHHHHHSSCHHHHHHHHHTTTTCGGG---CC-HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHhC---CC-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 667777777766666666554222111 11 134555666777888888888888888887754
No 130
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=91.23 E-value=6.4 Score=33.67 Aligned_cols=131 Identities=5% Similarity=-0.028 Sum_probs=78.3
Q ss_pred HHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCCCCcccchHH
Q 007863 205 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRSDVVP 283 (587)
Q Consensus 205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~ 283 (587)
.++..+..++..+.|..|+..+......+.+ ..++.+...+. -.+|.+--..+.+++.+... .+..+.+
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~-----~~~~~~~ 127 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-----HLTELPT 127 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-----SGGGHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-----ChHHHHH
Confidence 4455566666677788887777765443322 23344444443 45677766666556666543 1233566
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhh
Q 007863 284 AYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 349 (587)
Q Consensus 284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 349 (587)
.+.....|++.-+|..|+.++-.... +...+.+++.+..++.|++..||.+...+|..++..
T Consensus 128 ~i~~W~~s~~~w~rR~ai~~~l~~~~----~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~ 189 (220)
T 2b6c_A 128 IFALFYGAENFWNRRVALNLQLMLKE----KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT 189 (220)
T ss_dssp HHHHHTTCSSHHHHHHHHHTTTTCGG----GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence 77777777777777766665422211 111244566666677788888888888887777654
No 131
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=89.47 E-value=12 Score=33.94 Aligned_cols=206 Identities=12% Similarity=0.129 Sum_probs=123.1
Q ss_pred HHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhh-chh----hH---hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 007863 355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GID----LL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426 (587)
Q Consensus 355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~-~~~----~~---~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~ 426 (587)
+.+.++..+...+..-+-+.|..+...+..+...- |.. .+ .+.++..+....++++...- +-..+...
T Consensus 75 ~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~--~G~mLRec-- 150 (341)
T 1upk_A 75 YNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALN--CGIMLREC-- 150 (341)
T ss_dssp HHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHH--HHHHHHHH--
T ss_pred HHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhH--HHHHHHHH--
Confidence 44566667777777767777777777666654321 110 00 13445555444444443221 11111111
Q ss_pred hhChhhHHHH-----HHHHHHHHcCCCchHHHHHHHHHHHHHHHHh---Chhhh---hhchHHHHHhhhcCCccHHHHHH
Q 007863 427 QLGVGFFDDK-----LGALCMQWLKDKVYSIRDAAANNVKRLAEEF---GPDWA---MQHIVPQVLEMINNPHYLYRMTI 495 (587)
Q Consensus 427 ~~~~~~~~~~-----l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~---~~~~~~~l~~~l~~~~~~~r~~a 495 (587)
+..+.+... ....+..+++.++.+|-.-|..++..+...- -.+++ -+.++....+++.++|+.+|..+
T Consensus 151 -ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 151 -IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp -HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred -HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 111211111 2234567888899999999998888776431 11221 25567777778999999999999
Q ss_pred HHHHHHhhcccCh-HH---H--HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--------HHHHhHHHHHHHh
Q 007863 496 LQAISLLAPVMGS-EI---T--CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------VVEKSIRPCLVEL 561 (587)
Q Consensus 496 ~~~l~~l~~~~~~-~~---~--~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--------~~~~~i~~~l~~l 561 (587)
++.++.+.-.-.. .. | ...-+-.+..++.|++.+++..|...+...+..-..+ .-.+.++.-|..+
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f 309 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKF 309 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhC
Confidence 9999999753211 11 1 2446778888999999999999999988776542211 1224456666677
Q ss_pred cCCC
Q 007863 562 SEDP 565 (587)
Q Consensus 562 ~~d~ 565 (587)
..|+
T Consensus 310 ~~d~ 313 (341)
T 1upk_A 310 QNDR 313 (341)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 7776
No 132
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=89.41 E-value=6.7 Score=30.94 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=68.6
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH----HHhHHHHHH
Q 007863 445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVI 520 (587)
Q Consensus 445 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~l~ 520 (587)
+.+++|..-...+..+.. -. . -....+..+.+.++++|..+...|+..+..+.+++|..+. ...++..+.
T Consensus 14 l~~~dw~~~leicD~I~~----~~-~-~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~ 87 (148)
T 1mhq_A 14 MSEQDWSAIQNFCEQVNT----DP-N-GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELI 87 (148)
T ss_dssp CSSCCHHHHHHHHHHHHH----SS-H-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHc----CC-c-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence 445677654444333322 11 1 1244566677778889999999999999999999987532 356777777
Q ss_pred hhcCC------CCccHHHHHHHHHHHHHhhhchH
Q 007863 521 NASKD------RVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 521 ~~l~d------~~~~vR~~a~~~l~~l~~~~~~~ 548 (587)
+++.+ .++.||..++..+..+...+...
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~ 121 (148)
T 1mhq_A 88 KVLSPKYLGSWATGKVKGRVIEILFSWTVWFPED 121 (148)
T ss_dssp HTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 77764 36799999999999998887643
No 133
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=89.36 E-value=3.8 Score=32.99 Aligned_cols=75 Identities=8% Similarity=0.103 Sum_probs=54.5
Q ss_pred hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH----HHhHHHHHHhhcCC-CCccHHHHHHHHHHHHHhhhchH
Q 007863 474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~~l~d-~~~~vR~~a~~~l~~l~~~~~~~ 548 (587)
...+..+.+.+++++..+...|+..+..+.+++|..+. ...++..+.+++.. .++.||..++..+..+...++..
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44566677777888888888899999999988887521 24455555555543 56799999999999988877654
No 134
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=88.83 E-value=5.8 Score=31.33 Aligned_cols=72 Identities=7% Similarity=0.010 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhh----hhchHHHHHhhhcC------CccHHHHHHHHHHHHhhcc
Q 007863 436 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLEMINN------PHYLYRMTILQAISLLAPV 505 (587)
Q Consensus 436 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~~l~~------~~~~~r~~a~~~l~~l~~~ 505 (587)
..+..+.+-+.+.++.+...|+..|..+++.+|..|. ...++..+.+++.+ ++..||.-.+..+..-...
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 4455666777788888888888888888888887652 25566666666643 3456777777777666655
Q ss_pred cC
Q 007863 506 MG 507 (587)
Q Consensus 506 ~~ 507 (587)
++
T Consensus 128 f~ 129 (149)
T 3g2s_A 128 LP 129 (149)
T ss_dssp CT
T ss_pred hC
Confidence 44
No 135
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=87.51 E-value=6.4 Score=31.96 Aligned_cols=99 Identities=12% Similarity=0.091 Sum_probs=67.1
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH----HHhHHHHHH
Q 007863 445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVI 520 (587)
Q Consensus 445 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~l~ 520 (587)
+.+++|..-...+..+.. -.. -....+..+.+.++++|..+...|+..+..+.+++|.... ...++..+.
T Consensus 26 l~~~Dw~~ileicD~I~~----~~~--~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~ 99 (171)
T 1juq_A 26 NRQEDWEYIIGFCDQINK----ELE--GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELI 99 (171)
T ss_dssp CSSCCHHHHHHHHHHHHH----STT--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHc----CCc--cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence 445677654444333322 111 1244566677778889999999999999999998886532 345566666
Q ss_pred hhcCC------CCccHHHHHHHHHHHHHhhhchHH
Q 007863 521 NASKD------RVPNIKFNVAKVLQSLIPIVDQSV 549 (587)
Q Consensus 521 ~~l~d------~~~~vR~~a~~~l~~l~~~~~~~~ 549 (587)
+++.. .++.||..++..+..+...++...
T Consensus 100 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~ 134 (171)
T 1juq_A 100 KVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEA 134 (171)
T ss_dssp HHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 66542 367999999999999988876543
No 136
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=87.16 E-value=9.6 Score=30.05 Aligned_cols=96 Identities=6% Similarity=0.044 Sum_probs=65.0
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhh----hhchHHHHHh
Q 007863 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLE 482 (587)
Q Consensus 407 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~ 482 (587)
.+++|..-..++..+..-. .| ....+..+.+-+++.++.+...|+..|..+++.+|..+. ...++..+..
T Consensus 15 ~~~dw~~~leicD~I~~~~--~~----~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~k 88 (148)
T 1mhq_A 15 SEQDWSAIQNFCEQVNTDP--NG----PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIK 88 (148)
T ss_dssp SSCCHHHHHHHHHHHHHSS--HH----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcCC--cc----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHH
Confidence 3567776554444432210 11 234566677778889999999999999999999888752 3667777777
Q ss_pred hhcC------CccHHHHHHHHHHHHhhcccCh
Q 007863 483 MINN------PHYLYRMTILQAISLLAPVMGS 508 (587)
Q Consensus 483 ~l~~------~~~~~r~~a~~~l~~l~~~~~~ 508 (587)
++.+ .+..||...+..+..-+..++.
T Consensus 89 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (148)
T 1mhq_A 89 VLSPKYLGSWATGKVKGRVIEILFSWTVWFPE 120 (148)
T ss_dssp TTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 7653 3567888888888777765543
No 137
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=86.79 E-value=9.6 Score=29.70 Aligned_cols=76 Identities=11% Similarity=-0.032 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh
Q 007863 160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHL----KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP 235 (587)
Q Consensus 160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~ 235 (587)
..++....+.+-+.+.++.+...++..|..++++.|..-. ...++..+..+++..++.||.-....+...+..+..
T Consensus 39 ~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 39 GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence 3455666677777888999999999999999988875211 133444444444445667777777777766665543
No 138
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=86.69 E-value=10 Score=30.81 Aligned_cols=96 Identities=7% Similarity=0.077 Sum_probs=63.2
Q ss_pred CCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhh----hhchHHHHHhh
Q 007863 408 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLEM 483 (587)
Q Consensus 408 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~~ 483 (587)
+++|..-..++..+..-. .+ ....+..+.+-+++.++.+...|+..|..+++.+|..+. ...++..+..+
T Consensus 28 ~~Dw~~ileicD~I~~~~--~~----~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl 101 (171)
T 1juq_A 28 QEDWEYIIGFCDQINKEL--EG----PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKV 101 (171)
T ss_dssp SCCHHHHHHHHHHHHHST--TH----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCC--cc----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHH
Confidence 467776544444432210 11 234556677778888899999999999999888887652 25567777776
Q ss_pred hcC------CccHHHHHHHHHHHHhhcccChH
Q 007863 484 INN------PHYLYRMTILQAISLLAPVMGSE 509 (587)
Q Consensus 484 l~~------~~~~~r~~a~~~l~~l~~~~~~~ 509 (587)
+.. .+..||..++..+..-...++..
T Consensus 102 ~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~ 133 (171)
T 1juq_A 102 VSPKYLGDRVSEKVKTKVIELLYSWTMALPEE 133 (171)
T ss_dssp HCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTC
T ss_pred hccccCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 642 24678888888888877765543
No 139
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=85.83 E-value=3.2 Score=31.75 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=14.2
Q ss_pred hchHHHHHhhhcCCccHHHHHHHHHHHH
Q 007863 474 QHIVPQVLEMINNPHYLYRMTILQAISL 501 (587)
Q Consensus 474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~ 501 (587)
..++|.+...++|.||.+....+..+..
T Consensus 30 ~p~lp~LL~WLQD~NWPvA~~i~~~L~~ 57 (134)
T 3ut4_A 30 EPIIFDLLKWLQDYNWPIAKDILPVVVL 57 (134)
T ss_dssp HHHHHHHHGGGSCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 3355555555555555555444444443
No 140
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=85.22 E-value=25 Score=33.00 Aligned_cols=223 Identities=11% Similarity=0.068 Sum_probs=117.9
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh--hHhhhhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhCh---hh
Q 007863 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGV---GF 432 (587)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~---~~ 432 (587)
++--+..++..+++.=|...-..|..+...+... .+...+-..+.+.+.+ ....--...++.++.+.+.+.. +.
T Consensus 130 Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkee 209 (403)
T 3fga_B 130 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 209 (403)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHH
Confidence 3444566777777777777777777766543221 1112222233333322 2122223567777777776532 11
Q ss_pred HHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH
Q 007863 433 FDDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT 511 (587)
Q Consensus 433 ~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~ 511 (587)
....+...++.+-+.+.. .--.+-..++..+++.- +. ....++..+.+.---.+.......+.-+..+.+.++++.+
T Consensus 210 hk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKD-p~-L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f 287 (403)
T 3fga_B 210 HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-ST-LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEF 287 (403)
T ss_dssp HHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHC-GG-GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhC-ch-hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHH
Confidence 222333444444333322 12233444444444321 11 2344444554443334556667777888888888887765
Q ss_pred H---HhHHHHHHhhcCCCCccHHHHHHHHHH--HHHhhhc--hHHHHHhHHHHHHHhcC-CCCccHHHHHHHHHHHHHHH
Q 007863 512 C---SQLLPVVINASKDRVPNIKFNVAKVLQ--SLIPIVD--QSVVEKSIRPCLVELSE-DPDVDVRFFATQALQSKDQV 583 (587)
Q Consensus 512 ~---~~~l~~l~~~l~d~~~~vR~~a~~~l~--~l~~~~~--~~~~~~~i~~~l~~l~~-d~~~~Vr~~a~~al~~l~~~ 583 (587)
. ..+...+..++.+++..|-..|+..+. .+..-+. ...+...+.|.|.+... -=++.||..|..++..+.++
T Consensus 288 ~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 288 VKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp HHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 3 445566777888888888888776552 1121111 12333445555555322 23567999999999887654
No 141
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=85.21 E-value=13 Score=29.83 Aligned_cols=75 Identities=11% Similarity=0.039 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhccc-CchhHHHHHHHHHHHHhcccCh
Q 007863 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP 235 (587)
Q Consensus 161 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~ 235 (587)
.++.+..+.+-+.+.++.++..++..|..++++++..- ....++..+..++.. .++.||.-+...+...+..+..
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34555666667788899999999999999999877511 113344444444543 3567777777777766665543
No 142
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=84.34 E-value=5.8 Score=34.06 Aligned_cols=75 Identities=11% Similarity=0.131 Sum_probs=44.5
Q ss_pred hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH----HHhHHHHHHhhcC-CCCccHHHHHHHHHHHHHhhhchH
Q 007863 474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQS 548 (587)
Q Consensus 474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~~l~-d~~~~vR~~a~~~l~~l~~~~~~~ 548 (587)
...+..+.+.+++++..+...|+..+..+.++.|.... ...++..+.++++ ..++.||..++..+..+...+..+
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 123 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNE 123 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 33455555566666777777777777777766665321 2233333333332 245678888888888887766543
No 143
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=84.23 E-value=9.1 Score=30.56 Aligned_cols=97 Identities=10% Similarity=0.141 Sum_probs=63.5
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhc-CCccHHHHHHHHHHHHhhcccChHHH----HHhHHHH-
Q 007863 445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPV- 518 (587)
Q Consensus 445 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~- 518 (587)
+.+++|..-...+..+.. - .. -....+..+.+.++ +++..+...|+..+..+.+++|.... ...++..
T Consensus 29 l~~~Dw~~~leicD~I~~----~-~~-~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~ 102 (157)
T 1elk_A 29 LQSEDWALNMEICDIINE----T-EE-GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESV 102 (157)
T ss_dssp CSSCCHHHHHHHHHHHHH----S-SS-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhC----C-Cc-cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHH
Confidence 445677655544443322 1 11 12445666777776 57888999999999999999987632 2345555
Q ss_pred HHhhcC---CCCccHHHHHHHHHHHHHhhhch
Q 007863 519 VINASK---DRVPNIKFNVAKVLQSLIPIVDQ 547 (587)
Q Consensus 519 l~~~l~---d~~~~vR~~a~~~l~~l~~~~~~ 547 (587)
+.+.+. ++...||..++..+..+...+..
T Consensus 103 Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~ 134 (157)
T 1elk_A 103 LVRTILPKNNPPTIVHDKVLNLIQSWADAFRS 134 (157)
T ss_dssp THHHHSTTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 455553 34568999999999999877653
No 144
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=82.51 E-value=16 Score=28.75 Aligned_cols=75 Identities=11% Similarity=-0.058 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhccc------CchhHHHHHHHHHHHHh
Q 007863 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQD------DQDSVRLLAVEGCGALG 230 (587)
Q Consensus 161 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d------~~~~vr~~a~~~l~~l~ 230 (587)
.+.....+.+-+.+.++.+...++..|..+++++|.. .....++..+.+++.+ .++.||.-..+.+...+
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 4556666777778999999999999999999988752 1223456666666654 35788988888888887
Q ss_pred cccCh
Q 007863 231 KLLEP 235 (587)
Q Consensus 231 ~~~~~ 235 (587)
..++.
T Consensus 126 ~~f~~ 130 (149)
T 3g2s_A 126 VGLPE 130 (149)
T ss_dssp HHCTT
T ss_pred HHhCC
Confidence 76653
No 145
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=82.37 E-value=28 Score=31.45 Aligned_cols=184 Identities=15% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHcCC
Q 007863 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWLKD 447 (587)
Q Consensus 373 ~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d 447 (587)
.+-+..-..+......-|........+..++ .+|+..++.+..+...... +.+.+.++..++.--++
T Consensus 13 ~lY~~~S~~Is~~va~~G~~~~k~~~vr~lR--------~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~ 84 (321)
T 1w9c_A 13 NVYKCLSENISAAIQANGEMVTKQPLIRSMR--------TVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQR 84 (321)
T ss_dssp HHHHHHHHHHHHHHHHHCSGGGGSHHHHHHH--------HHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCchhhccHHHHHHH--------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred CchHHHHH-HHHHHHHHHHHhChhhhhhchHHHHHhhhc-----------CCccHHHHHHHHHHHHhhcccChH------
Q 007863 448 KVYSIRDA-AANNVKRLAEEFGPDWAMQHIVPQVLEMIN-----------NPHYLYRMTILQAISLLAPVMGSE------ 509 (587)
Q Consensus 448 ~~~~vr~~-a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-----------~~~~~~r~~a~~~l~~l~~~~~~~------ 509 (587)
..+..|+. .+.++..++..++.. ....+|.+++..- +..++.|......+.++...+-..
T Consensus 85 ~vp~aRepeVL~l~~tii~kl~~~--i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~ 162 (321)
T 1w9c_A 85 NVPAAREPEVLSTMAIIVNKLGGH--ITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPP 162 (321)
T ss_dssp SCGGGCCTHHHHHHHHHHHHHGGG--GGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCH
T ss_pred CCcccccHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCH
Q ss_pred HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch------HHHHHhHHHHHHH---hcCCCC
Q 007863 510 ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ------SVVEKSIRPCLVE---LSEDPD 566 (587)
Q Consensus 510 ~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~i~~~l~~---l~~d~~ 566 (587)
...+.++..+.-..+++.++|-..++.++..+...+.. ..+....++.+.. .++|++
T Consensus 163 ~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~ 228 (321)
T 1w9c_A 163 TQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTS 228 (321)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCch
No 146
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=81.38 E-value=25 Score=30.11 Aligned_cols=75 Identities=12% Similarity=0.041 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhccc-CchhHHHHHHHHHHHHhcccCh
Q 007863 161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP 235 (587)
Q Consensus 161 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~ 235 (587)
.++.+..+.+-+.+.++.+...++..|..++++.|.. .....++..+..+++. .++.||.-..+.+...+..+..
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 3556666677778999999999999999999988752 1122344444444443 3467888888887777765543
No 147
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=80.21 E-value=7.6 Score=30.13 Aligned_cols=70 Identities=13% Similarity=0.219 Sum_probs=48.5
Q ss_pred HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHH---HHHHHhc-----CCC------CccHHHHHHHH
Q 007863 511 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIR---PCLVELS-----EDP------DVDVRFFATQA 576 (587)
Q Consensus 511 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~---~~l~~l~-----~d~------~~~Vr~~a~~a 576 (587)
+...++..+.+-+++.++++...+++.|..++..-. +.|...+. ..+..+. .|+ -.+||..|.++
T Consensus 46 ~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs-~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl 124 (140)
T 1vdy_A 46 IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG-SEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHET 124 (140)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC-HHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHH
Confidence 457899999999999999999999999999987643 33333222 2333332 132 25789999888
Q ss_pred HHHHH
Q 007863 577 LQSKD 581 (587)
Q Consensus 577 l~~l~ 581 (587)
+..|.
T Consensus 125 ~~ll~ 129 (140)
T 1vdy_A 125 ISAIF 129 (140)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87664
No 148
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=78.90 E-value=42 Score=31.32 Aligned_cols=208 Identities=11% Similarity=0.091 Sum_probs=110.3
Q ss_pred CCCchHHHHHHHHHHHHHHHH--h----CCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC-HHHH-HHhHHH
Q 007863 251 QDKSWRVRYMVANQLYELCEA--V----GPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN-PELA-IQHILP 322 (587)
Q Consensus 251 ~d~~~~vR~~a~~~l~~l~~~--~----~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~-~~~~~~ 322 (587)
.+.+|.--..+.+.|..+... + .+......++--+..+++.+|++-|......|-.+-..+. -..+ .+.+-.
T Consensus 139 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n 218 (392)
T 2jak_A 139 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 218 (392)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366787777777777766543 1 1223334567778888899999999888888876654332 2221 222333
Q ss_pred HHhHhcCCCc-HHHHHHHHHHHHhhhhhhc---hHHHHHhHHHHHHHhcCCCChH-HHHHHHHHhHHhhhhhchhhHhhh
Q 007863 323 CVKELSSDSS-QHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPD-VRLNIISKLDQVNQVIGIDLLSQS 397 (587)
Q Consensus 323 ~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~i~~~~~~~~~~~~ 397 (587)
.+.+...+.. ..--..+++.++.+...+. +++....+...+..+.+...-. --.....++..+++. ...+...
T Consensus 219 if~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK--Dp~L~~~ 296 (392)
T 2jak_A 219 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTEP 296 (392)
T ss_dssp HHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHH--CGGGHHH
T ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhc--CchhHHH
Confidence 3333332221 1111245566666666553 3344434445555555543211 112233333333322 0111223
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHH---HHHHcCCCchHHHHHHHHHH
Q 007863 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL---CMQWLKDKVYSIRDAAANNV 460 (587)
Q Consensus 398 ~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~l 460 (587)
++..+.+..--.+..-....+..+..+....+++.+..-..|+ +-.++.++...|-+.|+..+
T Consensus 297 vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 297 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 3333333332234444456777777777777777765544444 45667888888888887655
No 149
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=78.68 E-value=48 Score=31.86 Aligned_cols=56 Identities=13% Similarity=0.016 Sum_probs=32.8
Q ss_pred CcHHHHHHHHHHHHHHHhhChhh-HHH--HHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 007863 410 HWRVRLAIIEYIPLLASQLGVGF-FDD--KLGALCMQWLKDKVYSIRDAAANNVKRLAE 465 (587)
Q Consensus 410 ~~~vr~~~~~~l~~l~~~~~~~~-~~~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 465 (587)
++.+-.-|+.=+|.+++..+... ... ..-..++.++.+++++||..|+.++..+..
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45555556666666666554221 111 134556677777777777777777776653
No 150
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=78.03 E-value=14 Score=28.70 Aligned_cols=64 Identities=14% Similarity=0.067 Sum_probs=43.5
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Q 007863 403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 467 (587)
Q Consensus 403 ~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 467 (587)
.+...|.+|..-...+.-|..+...... .+...+++.+.+.+.+..+.++..|+..|..++..-
T Consensus 17 ~~ATs~d~~~~pgylm~EIA~~T~~s~~-~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~G 80 (140)
T 1vdy_A 17 DAVTSDEDKVAPVYKLEEICDLLRSSHV-SIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKS 80 (140)
T ss_dssp HHTTCSCSSCCCHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTS
T ss_pred HHHhcCCCCCCcHHHHHHHHHHHHhcch-hHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhC
Confidence 3445566665544455544444432221 234678999999999999999999999999998643
No 151
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=77.65 E-value=17 Score=27.82 Aligned_cols=93 Identities=14% Similarity=0.161 Sum_probs=56.0
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhH
Q 007863 436 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQL 515 (587)
Q Consensus 436 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~ 515 (587)
.++|-++.+++|.+|.+...++..|..+ .+.++|.+.+.+.+.+..-+ .+.+..+...+..+ ....+
T Consensus 31 p~lp~LL~WLQD~NWPvA~~i~~~L~~~---------~~~l~p~I~~vl~s~D~~W~---ywil~~lv~~~~~~-~~~~l 97 (134)
T 3ut4_A 31 PIIFDLLKWLQDYNWPIAKDILPVVVLH---------QSIAMPHILTILQGNDIMWK---YWVIKLMIPYLIYP-NKQLV 97 (134)
T ss_dssp HHHHHHHGGGSCTTSTTHHHHHHHHHHT---------HHHHHHHHHHHHHSSCHHHH---HHHHHHHGGGCCHH-HHHHH
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHc---------cHhhHHHHHHHHHcCChHHH---HHHHHHHHHcCCHH-HHHHH
Confidence 4677788888999998877777766653 23467777776655544333 33344444444443 45677
Q ss_pred HHHHHhhcCCCC-----ccHHHHHHHHHHHH
Q 007863 516 LPVVINASKDRV-----PNIKFNVAKVLQSL 541 (587)
Q Consensus 516 l~~l~~~l~d~~-----~~vR~~a~~~l~~l 541 (587)
.|.+..+...+. ..+...|-..|...
T Consensus 98 ~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~ 128 (134)
T 3ut4_A 98 KSELERLSSLEIINEDIREIVNLSKDYLHFY 128 (134)
T ss_dssp HHHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 777777777653 23444444444433
No 152
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=72.35 E-value=42 Score=28.53 Aligned_cols=73 Identities=8% Similarity=0.102 Sum_probs=45.7
Q ss_pred hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH----HHhHHHHHHhhcC-CCCccHHHHHHHHHHHHHhhhc
Q 007863 474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVD 546 (587)
Q Consensus 474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~~l~-d~~~~vR~~a~~~l~~l~~~~~ 546 (587)
...+..+.+.+++++..+...|+..+..+..+.|.... ...++..+.+++. ..++.||..++..+..+...+.
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 45666666667777777777777777777777765421 2334444444443 3456677777777777666544
No 153
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=69.20 E-value=41 Score=26.71 Aligned_cols=73 Identities=5% Similarity=-0.091 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHH-HHHhccc---CchhHHHHHHHHHHHHhcc
Q 007863 162 TELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSI-FEELTQD---DQDSVRLLAVEGCGALGKL 232 (587)
Q Consensus 162 ~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~~~----~~~~i~~~-l~~l~~d---~~~~vr~~a~~~l~~l~~~ 232 (587)
++....+.+-++ ++++.++..|+..|..+++++|..- ....++.- +.+++.+ ....||.-+.+.+...+..
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 445555556565 5889999999999999999887521 12233443 4444432 2346777777777776665
Q ss_pred cC
Q 007863 233 LE 234 (587)
Q Consensus 233 ~~ 234 (587)
+.
T Consensus 132 f~ 133 (157)
T 1elk_A 132 FR 133 (157)
T ss_dssp HT
T ss_pred cC
Confidence 43
No 154
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=67.59 E-value=90 Score=30.03 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=29.2
Q ss_pred ccHHHHHHHHHHHHhhcccChHHH-H--HhHHHHHHhhcCCCCccHHHHHHHHHHHHH
Q 007863 488 HYLYRMTILQAISLLAPVMGSEIT-C--SQLLPVVINASKDRVPNIKFNVAKVLQSLI 542 (587)
Q Consensus 488 ~~~~r~~a~~~l~~l~~~~~~~~~-~--~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~ 542 (587)
+..+-..|+.=++.+.+..+.... . -..-..+..++++++++||..|+.++..+.
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 445556666666666665544321 1 123344555556666666666666665553
No 155
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=64.22 E-value=85 Score=28.53 Aligned_cols=69 Identities=10% Similarity=0.075 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHhHHhhhhh-chhhH--hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 007863 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (587)
Q Consensus 359 l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~-~~~~~--~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 427 (587)
=+..+.....+.+.+....++.++.++.... |.+.+ ....+..+..++.+.+..|-+.+++.+..++..
T Consensus 161 GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~ 232 (339)
T 3dad_A 161 GLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEY 232 (339)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHcc
Confidence 3455666666667788888888888776542 22111 234566666677766667777777777666654
No 156
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=63.56 E-value=71 Score=27.41 Aligned_cols=69 Identities=7% Similarity=0.026 Sum_probs=48.7
Q ss_pred HHHHHHHhcccCchhHHHHHHH----HHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 007863 203 IMSIFEELTQDDQDSVRLLAVE----GCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271 (587)
Q Consensus 203 i~~~l~~l~~d~~~~vr~~a~~----~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~ 271 (587)
..+.+...+.|++.-+|..+.. .+..+.....++...+.++..+...+.|++..||.+...+|..++..
T Consensus 109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~ 181 (235)
T 1t06_A 109 AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS 181 (235)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh
Confidence 4556667788888888888877 44442211112345667788888888899999999999988887764
No 157
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=61.53 E-value=1.2e+02 Score=29.23 Aligned_cols=144 Identities=10% Similarity=0.119 Sum_probs=85.1
Q ss_pred hhhHHHHHHHhcCC------CcHHHHHHHHHHHHHHHhhChhhHHHHH-HHHHHHHcCCCchHHHHHHHHHHHHHHHHhC
Q 007863 396 QSLLPAIVELAEDR------HWRVRLAIIEYIPLLASQLGVGFFDDKL-GALCMQWLKDKVYSIRDAAANNVKRLAEEFG 468 (587)
Q Consensus 396 ~~~~~~l~~~~~~~------~~~vr~~~~~~l~~l~~~~~~~~~~~~l-~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 468 (587)
+.++|.+.+.+.++ +|.. .++.+..+......+.+.+.+ +..+...+.+....+...+++.+. +...
T Consensus 72 ~~ll~~Ik~iL~~~~~~~~lD~~~---Li~Ll~~il~~~~Fd~VLevysve~i~~aL~S~~~~l~~~~ckVI~---~s~p 145 (500)
T 3vld_A 72 KPLLATIKRFLTSNVSYDSLNYDY---LLDVVDKLVPMADFDDVLEVYSAEDLVKALRSEIDPLKVAACRVIE---NSQP 145 (500)
T ss_dssp HHHHHHHHHHHHCSSCCTTCCHHH---HHHHHHHHHHHSCHHHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH---TCSS
T ss_pred HHHHHHHHHHHcCCccccccCHHH---HHHHHHHHHhcCCHHHHHHhCCHHHHHHHHhcCChHHHHHHHHHhc---ccCc
Confidence 56888888887332 3333 677777777766655444322 445667778888888888888877 3333
Q ss_pred hhhhh-hchHHHHHhhhcCCccHH---HHHHHHHHHHhhcc-cChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHh
Q 007863 469 PDWAM-QHIVPQVLEMINNPHYLY---RMTILQAISLLAPV-MGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 469 ~~~~~-~~~~~~l~~~l~~~~~~~---r~~a~~~l~~l~~~-~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~ 543 (587)
.+.|. ..++..+.+.+.+++..+ --+.=.+++.++.. +=.....+..+|.+...-++.++.+-...+..+..+.+
T Consensus 146 k~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~LssdeLirrril~nnl~lL~~vK~~~~~i~~sRLLdll~il~~ 225 (500)
T 3vld_A 146 KGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTDELIRRRLFDNNLPYLVSVKGRMETVSFVRLIDFLTIEFQ 225 (500)
T ss_dssp GGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred hhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCchHHHHHHHHHHhHHHHHHHhcCCCceeHHHHHHHHHHHhc
Confidence 34443 568888888887775442 22233333333211 00012334456666665555566666666777766665
Q ss_pred hh
Q 007863 544 IV 545 (587)
Q Consensus 544 ~~ 545 (587)
.+
T Consensus 226 ~i 227 (500)
T 3vld_A 226 FI 227 (500)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 158
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=57.56 E-value=68 Score=25.25 Aligned_cols=74 Identities=4% Similarity=-0.062 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHhhhhh----HHHHHH-HHHHhcccC---chhHHHHHHHHHHHHhcc
Q 007863 162 TELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEAAHL----KSEIMS-IFEELTQDD---QDSVRLLAVEGCGALGKL 232 (587)
Q Consensus 162 ~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~~~~----~~~i~~-~l~~l~~d~---~~~vr~~a~~~l~~l~~~ 232 (587)
++....+..-+. .+++.+...|+..|..+++++|..-. ...++. .+.+++++. ...||....+.+...+..
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 444455555444 46888888899999999988876211 122333 244455443 235888888888777776
Q ss_pred cCh
Q 007863 233 LEP 235 (587)
Q Consensus 233 ~~~ 235 (587)
+..
T Consensus 132 F~~ 134 (152)
T 3rru_A 132 FPG 134 (152)
T ss_dssp CSS
T ss_pred hCC
Confidence 654
No 159
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=57.35 E-value=1.2e+02 Score=27.94 Aligned_cols=302 Identities=11% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCCh-HHHHHHHHHhHHHHHHhhCHHHHHHhHHHH
Q 007863 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE-AEVRIAAAGKVTKICRILNPELAIQHILPC 323 (587)
Q Consensus 245 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 323 (587)
.+.+.+...++..|......+..-...+-.+...+.++.-+.+...+.. ..+-......+..++.. ..--..
T Consensus 40 ~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~-------~~G~rv 112 (351)
T 3gvo_A 40 FIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQ-------MYGCRV 112 (351)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTS-------TTHHHH
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhC-------HHhHHH
Q ss_pred HhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHH
Q 007863 324 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 403 (587)
Q Consensus 324 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~ 403 (587)
+.+++...+..-+...+..+..-...+-.+.+..+++..+.... .++-+...+..+..-...+....+...++..+.
T Consensus 113 vQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~---~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~l 189 (351)
T 3gvo_A 113 IQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECV---QPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRIL 189 (351)
T ss_dssp HHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHS---CGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHH
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhh
Q 007863 404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM 483 (587)
Q Consensus 404 ~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ 483 (587)
+.. +..-|...++.+..-...+-.+.+..+++..++.. ..+..|...+..+..-+..+....+...++..++
T Consensus 190 e~~---~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~---~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l-- 261 (351)
T 3gvo_A 190 EHC---TAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEH---GRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCV-- 261 (351)
T ss_dssp HHS---CHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHH---SCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHH--
T ss_pred HHC---CHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHh---CchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHH--
Q ss_pred hcCCccHHHHHHHHHHHH-------hhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHH
Q 007863 484 INNPHYLYRMTILQAISL-------LAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRP 556 (587)
Q Consensus 484 l~~~~~~~r~~a~~~l~~-------l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~ 556 (587)
...+...|...+.-+.. -...+-.+.|.++++..++... .+..|...+..+..-...+....+...++.
T Consensus 262 -~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~---~~~~r~~i~~~i~~~~~~L~~~~~g~~i~~ 337 (351)
T 3gvo_A 262 -THASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMA---EPAQRKIIMHKIRPHITTLRKYTYGKHILA 337 (351)
T ss_dssp -HHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHC---CHHHHHHHHHHHGGGHHHHTTSTTTHHHHH
T ss_pred -HhCCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Q ss_pred HHHHhcCCCCcc
Q 007863 557 CLVELSEDPDVD 568 (587)
Q Consensus 557 ~l~~l~~d~~~~ 568 (587)
.+.++.....++
T Consensus 338 kl~~~~~~~~~~ 349 (351)
T 3gvo_A 338 KLEKYYLKNSPD 349 (351)
T ss_dssp HHHHHTC-----
T ss_pred HHHHHHhhcCcc
No 160
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=56.12 E-value=93 Score=26.34 Aligned_cols=73 Identities=11% Similarity=0.091 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhccc-CchhHHHHHHHHHHHHhcccC
Q 007863 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLE 234 (587)
Q Consensus 162 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~ 234 (587)
++.+..+..-+.+.++.+...++..|..++++.|..- ....++..+..++++ .+..||..+.+.+...+..+.
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 4555566667788999999999999999999876511 112244444444443 356788877777777665544
No 161
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=52.70 E-value=1.3e+02 Score=27.02 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhhccc-ChHH---HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch---HHHHHhHHHHHHHhc
Q 007863 490 LYRMTILQAISLLAPVM-GSEI---TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLVELS 562 (587)
Q Consensus 490 ~~r~~a~~~l~~l~~~~-~~~~---~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~ 562 (587)
..+..+++++.++...- |... ..+.+++.+...+.+++.++|.++...+-++.-.... ..-...++..+.+..
T Consensus 163 ~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il 242 (304)
T 3ebb_A 163 ANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTIL 242 (304)
T ss_dssp HHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 34555666665554421 2111 1234555565556666777777777666655443211 111223444444432
Q ss_pred -CCCCccHHHHHHHHHHHHHH
Q 007863 563 -EDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 563 -~d~~~~Vr~~a~~al~~l~~ 582 (587)
...|.++..++.-|++++..
T Consensus 243 ~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 243 EVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp TTCCCHHHHHHHHHHHHHHHT
T ss_pred hccCCHHHHHHHHHHHHHHHh
Confidence 34566777777778777763
No 162
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=51.29 E-value=1.2e+02 Score=26.28 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHhChhhh----hhchHHHHHhhhcCCccHHHHHHHHHHHHhh
Q 007863 450 YSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLEMINNPHYLYRMTILQAISLLA 503 (587)
Q Consensus 450 ~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~ 503 (587)
.-+|-.++..+|.+++.-..+.+ ...++|.+.+.+...+...|..|...+..+.
T Consensus 116 E~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 116 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp HHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 35677777777777765333331 2556777777676666667777777666665
No 163
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=51.04 E-value=92 Score=26.71 Aligned_cols=70 Identities=13% Similarity=-0.031 Sum_probs=46.5
Q ss_pred hHHHHHhhhcCCccHHHHHHHH----HHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhh
Q 007863 476 IVPQVLEMINNPHYLYRMTILQ----AISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 545 (587)
Q Consensus 476 ~~~~l~~~l~~~~~~~r~~a~~----~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~ 545 (587)
..+.+.....+++..+|..++. .+..+......+.....++..+...+.|+..-||.+...+|..+....
T Consensus 109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~ 182 (235)
T 1t06_A 109 AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISY 182 (235)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhC
Confidence 4555666777777666666666 333322111123456777888887888888889988888888887663
No 164
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=49.69 E-value=1.7e+02 Score=27.39 Aligned_cols=208 Identities=10% Similarity=0.041 Sum_probs=114.8
Q ss_pred CCCcHHHHHHHHHHHHhhhhh--hch----HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh--hHhhhhHH
Q 007863 329 SDSSQHVRSALATVIMGMAPI--LGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLP 400 (587)
Q Consensus 329 ~d~~~~vr~~a~~~l~~l~~~--~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~ 400 (587)
.|++|.--..+.+.+..+... +.. ..+...++--+..++..+++.-|......+..+...+... .+...+-.
T Consensus 139 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n 218 (392)
T 2jak_A 139 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 218 (392)
T ss_dssp CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356676666666666555432 221 1122345556777888888888888888888876554321 12223333
Q ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHcCCCchH-HHHHHHHHHHHHHHHhChhhhhhc
Q 007863 401 AIVELAED-RHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYS-IRDAAANNVKRLAEEFGPDWAMQH 475 (587)
Q Consensus 401 ~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~ 475 (587)
.+.+.+.+ ....--..+++.++.+.+.+. .+.....+...++.+.+..... --..-..++..+++. .+. ....
T Consensus 219 if~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK-Dp~-L~~~ 296 (392)
T 2jak_A 219 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-DST-LTEP 296 (392)
T ss_dssp HHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHH-CGG-GHHH
T ss_pred HHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhc-Cch-hHHH
Confidence 34444433 222223467778888777664 2222333444444444433221 122333444444432 111 2244
Q ss_pred hHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHH---HhHHHHHHhhcCCCCccHHHHHHHHH
Q 007863 476 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC---SQLLPVVINASKDRVPNIKFNVAKVL 538 (587)
Q Consensus 476 ~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~---~~~l~~l~~~l~d~~~~vR~~a~~~l 538 (587)
++..+.+.---.+.......+.-+..+.+.++++.+. ..+...+.+++++++..|-..|+..+
T Consensus 297 vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 297 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 4444544322234445567888888888888887654 45556677888998888888877655
No 165
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=49.08 E-value=1.6e+02 Score=26.86 Aligned_cols=97 Identities=11% Similarity=0.081 Sum_probs=58.3
Q ss_pred hHHHHHHHHHhHHHHHH---hhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhh-chHHHH--HhHHHHHHHh
Q 007863 293 EAEVRIAAAGKVTKICR---ILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL-GKDATI--EQLLPIFLSL 366 (587)
Q Consensus 293 ~~~vr~~a~~~l~~l~~---~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~~~~~~--~~l~~~l~~~ 366 (587)
+...++.++..|..+.. .+-.+.....-+..+.+...+.+......++.++.++..+. |-+... ..++..+..+
T Consensus 131 ~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lysl 210 (339)
T 3dad_A 131 SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTL 210 (339)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHG
T ss_pred CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHH
Confidence 34445556666665332 11122333344566666667778888888888888887653 222222 3355556666
Q ss_pred cCCCChHHHHHHHHHhHHhhhhh
Q 007863 367 LKDEFPDVRLNIISKLDQVNQVI 389 (587)
Q Consensus 367 l~d~~~~vr~~a~~~l~~i~~~~ 389 (587)
+...+..|.+.++.-|..++..-
T Consensus 211 v~s~~~~V~k~AL~LL~v~V~~s 233 (339)
T 3dad_A 211 CASLSRLVVKTALKLLLVFVEYS 233 (339)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHC
T ss_pred HcCccHHHHHHHHHHHHHHHccC
Confidence 77777888888888887776553
No 166
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=48.39 E-value=1.6e+02 Score=26.76 Aligned_cols=13 Identities=8% Similarity=-0.146 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 007863 259 YMVANQLYELCEA 271 (587)
Q Consensus 259 ~~a~~~l~~l~~~ 271 (587)
..+++.+..+...
T Consensus 22 q~gsr~iQ~~l~~ 34 (333)
T 3bwt_A 22 QHGCRFLQKQLDI 34 (333)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHhhHHHHHHHcc
Confidence 4444555554444
No 167
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=48.38 E-value=2.6e+02 Score=29.24 Aligned_cols=106 Identities=9% Similarity=0.036 Sum_probs=57.5
Q ss_pred hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC--HHHHHHhHHHHHhHhcCC---CcHHHHHHHHHHHHhhhhhhch-HH
Q 007863 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--PELAIQHILPCVKELSSD---SSQHVRSALATVIMGMAPILGK-DA 354 (587)
Q Consensus 281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~~d---~~~~vr~~a~~~l~~l~~~~~~-~~ 354 (587)
+.|.+...+..++..+...+..++..++-.-+ ++.+.+.++..+-..+.. .++.--.++++++..++..+-. ..
T Consensus 340 l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~ 419 (799)
T 1vsy_4 340 FLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKL 419 (799)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTT
T ss_pred HHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcc
Confidence 55666666677777888888888887776433 144455555555555544 3444445566777766654421 11
Q ss_pred HHHhHHH---HHHHhcCCCChHHHHHHHHHhHHhh
Q 007863 355 TIEQLLP---IFLSLLKDEFPDVRLNIISKLDQVN 386 (587)
Q Consensus 355 ~~~~l~~---~l~~~l~d~~~~vr~~a~~~l~~i~ 386 (587)
+..++.| .+...+.-.++.=-..+.+.+..+.
T Consensus 420 yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~ 454 (799)
T 1vsy_4 420 YRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIA 454 (799)
T ss_dssp GGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHH
Confidence 2233333 3344444444444444455554444
No 168
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=48.10 E-value=59 Score=25.63 Aligned_cols=97 Identities=8% Similarity=0.060 Sum_probs=61.2
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcC-CccHHHHHHHHHHHHhhcccChHHH----HHhHHHH-
Q 007863 445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGSEIT----CSQLLPV- 518 (587)
Q Consensus 445 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~- 518 (587)
+.+++|..-...+..+.. - .. -....+..+.+.+.. ++..+...|+..+..+.+++|..+. ...++..
T Consensus 29 l~~~Dw~~ileicD~In~----~-~~-~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~ 102 (152)
T 3rru_A 29 VQTEDWGQFMHICDIINT----T-QD-GPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKEN 102 (152)
T ss_dssp CCSCCHHHHHHHHHHHHH----S-TT-HHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTT
T ss_pred CCCccHHHHHHHHHHHhC----C-Cc-cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHH
Confidence 456777754444444332 1 11 134456666666664 5776777799999999999987632 2334443
Q ss_pred HHhhcCCC---CccHHHHHHHHHHHHHhhhch
Q 007863 519 VINASKDR---VPNIKFNVAKVLQSLIPIVDQ 547 (587)
Q Consensus 519 l~~~l~d~---~~~vR~~a~~~l~~l~~~~~~ 547 (587)
+.+++.++ ...||..++..+..+...+..
T Consensus 103 L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~ 134 (152)
T 3rru_A 103 LVKLLNPRYNLPLDIQNRILNFIKTWSQGFPG 134 (152)
T ss_dssp TGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSS
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 45555543 346999999999999887754
No 169
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=46.94 E-value=2.7e+02 Score=29.08 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh--hhhhhchHHHHHHhcCC---CchHHHHHHHHHHHHHHHHh
Q 007863 198 HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQD---KSWRVRYMVANQLYELCEAV 272 (587)
Q Consensus 198 ~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d---~~~~vR~~a~~~l~~l~~~~ 272 (587)
.++..+.|.+.....+++..+...+..++..++..-|. +.+.+.++..+-..++. ..+.--.++++++..++..+
T Consensus 335 ~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~l 414 (799)
T 1vsy_4 335 EIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFI 414 (799)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHH
Confidence 34566778888888888888888888888888865441 33455555555555555 45555566678888877765
Q ss_pred CCC-CcccchHHHHHH---hcCCChHHHHHHHHHhHHHHHHh
Q 007863 273 GPE-PTRSDVVPAYVR---LLRDNEAEVRIAAAGKVTKICRI 310 (587)
Q Consensus 273 ~~~-~~~~~l~~~l~~---~l~d~~~~vr~~a~~~l~~l~~~ 310 (587)
-.. ..+.++.+++.. .++-+|+.--..+++.+..++..
T Consensus 415 v~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ 456 (799)
T 1vsy_4 415 VMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAF 456 (799)
T ss_dssp TTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHT
T ss_pred hcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHh
Confidence 432 234444444443 34555566666666777666653
No 170
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=41.72 E-value=1.1e+02 Score=23.14 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=15.0
Q ss_pred hchHHHHHhhhcCCccHHHHHHHHHHHHhhccc
Q 007863 474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVM 506 (587)
Q Consensus 474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~ 506 (587)
+.++..+.+.+.......|...+..+..+.+..
T Consensus 39 ~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns 71 (132)
T 4flb_A 39 STIVYHWMKWLRRSAYPHRLNLFYLANDVIQNC 71 (132)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Confidence 334444444443334444555555555554433
No 171
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=41.33 E-value=2e+02 Score=26.01 Aligned_cols=12 Identities=33% Similarity=0.462 Sum_probs=5.2
Q ss_pred HHHHHhHhcCCC
Q 007863 320 ILPCVKELSSDS 331 (587)
Q Consensus 320 ~~~~l~~~~~d~ 331 (587)
+.+.+..+..|.
T Consensus 120 l~~~~~~L~~d~ 131 (333)
T 3bwt_A 120 LRPYTVQLSKDL 131 (333)
T ss_dssp HGGGHHHHHTST
T ss_pred HHHHHHHHhcCC
Confidence 334444444444
No 172
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=35.27 E-value=1.6e+02 Score=22.90 Aligned_cols=70 Identities=17% Similarity=0.081 Sum_probs=41.5
Q ss_pred hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh---HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 007863 396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 465 (587)
Q Consensus 396 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 465 (587)
+.++..+.+.+....+.-+..++-.+..+++..|.++ |.+.+.+.+.......+..+|....+.+...-.
T Consensus 42 ~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~ 114 (144)
T 1sz9_A 42 QYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLN 114 (144)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhC
Confidence 3455555555555556666666666666666665432 233455555555555567788777777776653
No 173
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=34.29 E-value=96 Score=23.63 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=7.2
Q ss_pred CccHHHHHHHHHHHHH
Q 007863 527 VPNIKFNVAKVLQSLI 542 (587)
Q Consensus 527 ~~~vR~~a~~~l~~l~ 542 (587)
.++-|...+..+..++
T Consensus 52 ~~~~KL~~LYLindIl 67 (135)
T 4fu3_A 52 KSNRKLTFLYLANDVI 67 (135)
T ss_dssp CTTTHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHH
Confidence 3344444444444443
No 174
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=31.18 E-value=3.2e+02 Score=25.22 Aligned_cols=9 Identities=44% Similarity=0.589 Sum_probs=4.1
Q ss_pred hHHHHHHHh
Q 007863 553 SIRPCLVEL 561 (587)
Q Consensus 553 ~i~~~l~~l 561 (587)
.+.|.+..|
T Consensus 335 ~i~p~l~~L 343 (369)
T 3k49_A 335 AIRAYLDKL 343 (369)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 175
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=30.62 E-value=1.9e+02 Score=22.43 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=51.0
Q ss_pred HHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh---hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 007863 356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427 (587)
Q Consensus 356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 427 (587)
.+.++..+.+.+....+.-+..++..+..+++..|.+ .+...+.+.+.......+..+|....+.+..+-+.
T Consensus 41 a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 41 AQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCc
Confidence 3456666666666677888999999999999887754 23344556666666666788888888888777643
No 176
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=29.13 E-value=3.4e+02 Score=24.97 Aligned_cols=7 Identities=14% Similarity=-0.017 Sum_probs=2.7
Q ss_pred hHHHHHh
Q 007863 476 IVPQVLE 482 (587)
Q Consensus 476 ~~~~l~~ 482 (587)
+.|.+..
T Consensus 336 i~p~l~~ 342 (369)
T 3k49_A 336 IRAYLDK 342 (369)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3343333
No 177
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=26.94 E-value=2.2e+02 Score=24.70 Aligned_cols=97 Identities=9% Similarity=0.036 Sum_probs=51.1
Q ss_pred cCchhHHHHHHHHHHHHhcccC-h-hhh-----hhchHHHHHHhcCC----CchHHHHHHHHHHHHHHHHhCCCCcccch
Q 007863 213 DDQDSVRLLAVEGCGALGKLLE-P-QDC-----VAHILPVIVNFSQD----KSWRVRYMVANQLYELCEAVGPEPTRSDV 281 (587)
Q Consensus 213 d~~~~vr~~a~~~l~~l~~~~~-~-~~~-----~~~l~~~l~~~~~d----~~~~vR~~a~~~l~~l~~~~~~~~~~~~l 281 (587)
+..+..+..+++++..+...-. . ... ...++..+...+.+ .+..+|.+++..+-+++....+.....+.
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~e~ 180 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLEL 180 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCTTH
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchHHH
Confidence 3455677777777777665433 1 111 12223332222222 36678888888888887765432222233
Q ss_pred HHHHHHhcCC---------ChHHHHHHHHHhHHHHHH
Q 007863 282 VPAYVRLLRD---------NEAEVRIAAAGKVTKICR 309 (587)
Q Consensus 282 ~~~l~~~l~d---------~~~~vr~~a~~~l~~l~~ 309 (587)
...+.+.+.. .+.+....++.++|.+..
T Consensus 181 ~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 181 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp HHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 3333333321 245666667777776653
No 178
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=25.16 E-value=47 Score=24.95 Aligned_cols=56 Identities=14% Similarity=0.067 Sum_probs=30.6
Q ss_pred HHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863 519 VINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 519 l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~ 582 (587)
++.+++++++.||..|+...-.+.+ ....++|..+...+.......|..+|..+-+
T Consensus 62 Ll~Ll~H~n~~VRl~AA~~~L~~~p--------~~A~~vLe~ia~~~~~~~~f~A~m~L~~we~ 117 (123)
T 2i9c_A 62 LLSLFEYPNMQVRLQAAKLTLAVAP--------VKAREQLEAIVSSKWFPQAGDAGMCLDLLDD 117 (123)
T ss_dssp GGGGGGSSCHHHHHHHHHTTTTTCH--------HHHHHHHHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccHHHHHHHHHHhhCh--------HHHHHHHHHHHhCCCCCccccHHHHHHHHHc
Confidence 5666777777777666633322211 2344455555444444466666666666543
No 179
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=23.11 E-value=2e+02 Score=20.20 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=46.0
Q ss_pred hHHHHHhHHHHHHhhcCCC--CccHHHHHHHHHHHHHhh-hchHHHHHhHHHHHHHhcCCCCcc--HHHHHHHHHHHHH
Q 007863 508 SEITCSQLLPVVINASKDR--VPNIKFNVAKVLQSLIPI-VDQSVVEKSIRPCLVELSEDPDVD--VRFFATQALQSKD 581 (587)
Q Consensus 508 ~~~~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~l~~~-~~~~~~~~~i~~~l~~l~~d~~~~--Vr~~a~~al~~l~ 581 (587)
.+...+.++..+....+|. ..++|..|-++...+... ..+.......+..|.+..+||+-- .|......++.|-
T Consensus 12 ~e~~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~~~~vRAAtAIs~LDeISnDPNmP~htRT~IW~ivS~LE 90 (94)
T 2qzg_A 12 PADKLKNISSMLEEIVEDTTVPRNIRAAADNAKNALHNEEQELIVRSATAIQYLDDISEDPNMPIHTRTQIWGIVSELE 90 (94)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHh
Confidence 3444455555555556665 357888888888877543 333445556778888888888753 4555556655553
No 180
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=22.18 E-value=76 Score=29.28 Aligned_cols=97 Identities=8% Similarity=0.100 Sum_probs=47.6
Q ss_pred CCccHHHHHHHHHHHHhhcccC--hHHH-----HHhHHHHHHhhcC----CCCccHHHHHHHHHHHHHhhhchHHHHHhH
Q 007863 486 NPHYLYRMTILQAISLLAPVMG--SEIT-----CSQLLPVVINASK----DRVPNIKFNVAKVLQSLIPIVDQSVVEKSI 554 (587)
Q Consensus 486 ~~~~~~r~~a~~~l~~l~~~~~--~~~~-----~~~~l~~l~~~l~----d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i 554 (587)
+..+..+..+++++.++...-. ...+ ...++..+...+. +.+.++|.++.-.+-++.-..........+
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~~el 289 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLEL 289 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTH
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccchHHH
Confidence 4456677777777777754322 1111 1222333322221 124567766666665554433221111122
Q ss_pred HHHHHHhcC---------CCCccHHHHHHHHHHHHHH
Q 007863 555 RPCLVELSE---------DPDVDVRFFATQALQSKDQ 582 (587)
Q Consensus 555 ~~~l~~l~~---------d~~~~Vr~~a~~al~~l~~ 582 (587)
.+.+.++++ ..+.++..++.-|||.+..
T Consensus 290 ~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 290 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp HHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 333333222 2477888888888888874
No 181
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=22.01 E-value=4.8e+02 Score=24.23 Aligned_cols=28 Identities=18% Similarity=0.027 Sum_probs=15.6
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 007863 438 GALCMQWLKDKVYSIRDAAANNVKRLAE 465 (587)
Q Consensus 438 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 465 (587)
+..+...+..+.+.+|..+++.|+.+|.
T Consensus 164 i~~l~~~L~s~~~~~~~~aleLL~~lc~ 191 (383)
T 3eg5_B 164 ILLLVRAMDPAVPNMMIDAAKLLSALCI 191 (383)
T ss_dssp HHHHHHTCCTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHh
Confidence 4444455555555666666666555554
No 182
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=21.92 E-value=1.1e+02 Score=23.21 Aligned_cols=88 Identities=15% Similarity=0.055 Sum_probs=41.2
Q ss_pred hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccC---hHH--HHHhHHHHHHh-hcCCCCccHHHHHHHHHHHHHhhhch
Q 007863 474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG---SEI--TCSQLLPVVIN-ASKDRVPNIKFNVAKVLQSLIPIVDQ 547 (587)
Q Consensus 474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---~~~--~~~~~l~~l~~-~l~d~~~~vR~~a~~~l~~l~~~~~~ 547 (587)
+.++..+.+.+.......|...+..+..+.+... .+. .....+|.++. .....++..|....+.+..+-..
T Consensus 38 ~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~~r--- 114 (135)
T 4fu3_A 38 GPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQER--- 114 (135)
T ss_dssp HHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---
Confidence 4455555554444444567777777777765432 221 12222332222 22222345566666666655432
Q ss_pred HHHHHhHHHHHHHhcCC
Q 007863 548 SVVEKSIRPCLVELSED 564 (587)
Q Consensus 548 ~~~~~~i~~~l~~l~~d 564 (587)
..|...++..|...+.+
T Consensus 115 ~vf~~~~i~~L~~~l~~ 131 (135)
T 4fu3_A 115 SVYGGEFIQQLKLSMED 131 (135)
T ss_dssp TSSCHHHHHHHHHTC--
T ss_pred CCcCHHHHHHHHHHHhC
Confidence 23334555556554443
No 183
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=21.86 E-value=1.5e+02 Score=27.29 Aligned_cols=101 Identities=10% Similarity=0.031 Sum_probs=56.4
Q ss_pred HhcccCchhHHHHHHHHHHHHhcccC-hhhh------hhchHHHHHHhcC----CCchHHHHHHHHHHHHHHHHhCCCCc
Q 007863 209 ELTQDDQDSVRLLAVEGCGALGKLLE-PQDC------VAHILPVIVNFSQ----DKSWRVRYMVANQLYELCEAVGPEPT 277 (587)
Q Consensus 209 ~l~~d~~~~vr~~a~~~l~~l~~~~~-~~~~------~~~l~~~l~~~~~----d~~~~vR~~a~~~l~~l~~~~~~~~~ 277 (587)
....+..+..+..+++++..+...-. .... ...++..+...+. ..+..+|.+++..+-+++....+...
T Consensus 206 ~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~ 285 (362)
T 3l3f_X 206 EGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS 285 (362)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc
Confidence 34445567788888888888766543 1111 1223333322221 23567888888888887765433221
Q ss_pred ccchHHHHHHhcC---------CChHHHHHHHHHhHHHHHH
Q 007863 278 RSDVVPAYVRLLR---------DNEAEVRIAAAGKVTKICR 309 (587)
Q Consensus 278 ~~~l~~~l~~~l~---------d~~~~vr~~a~~~l~~l~~ 309 (587)
...+.+.+...+. ..+.+....++-++|.+..
T Consensus 286 ~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 286 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 2344445554443 2356777777777777763
No 184
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=20.93 E-value=2.9e+02 Score=21.33 Aligned_cols=87 Identities=15% Similarity=0.148 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH------HHHHhH----HHHHHhhc
Q 007863 454 DAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE------ITCSQL----LPVVINAS 523 (587)
Q Consensus 454 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~------~~~~~~----l~~l~~~l 523 (587)
...+..|..++...-. ..+.++..+.+.+....+..|..++..+..+.+..+.. .|...+ .+.+...+
T Consensus 23 ~~~I~~LT~~a~~~~~--~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~ 100 (145)
T 3d9j_A 23 KAKMTQITKAAIKAIK--FYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLY 100 (145)
T ss_dssp HHHHHHHHHHHHHTGG--GHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHH
Confidence 3344455555543211 23455555555555455667788888887777765541 233333 33333333
Q ss_pred CCCCccHHHHHHHHHHHHHh
Q 007863 524 KDRVPNIKFNVAKVLQSLIP 543 (587)
Q Consensus 524 ~d~~~~vR~~a~~~l~~l~~ 543 (587)
. .++..|....+.+..+-+
T Consensus 101 ~-~~~~~r~kl~rLl~iW~~ 119 (145)
T 3d9j_A 101 R-CPGDDKSKIVRVLNLWQK 119 (145)
T ss_dssp S-SCGGGHHHHHHHHHHHHH
T ss_pred h-CCHHHHHHHHHHHHHhcC
Confidence 3 348999888888887753
No 185
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=20.01 E-value=2.8e+02 Score=20.81 Aligned_cols=32 Identities=6% Similarity=0.063 Sum_probs=15.9
Q ss_pred hhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 007863 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 428 (587)
Q Consensus 397 ~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~ 428 (587)
.++..+.+.+......-|...+-.+..+....
T Consensus 40 ~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns 71 (132)
T 4flb_A 40 TIVYHWMKWLRRSAYPHRLNLFYLANDVIQNC 71 (132)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Confidence 34444444444444455555555555555443
Done!