BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>007864
MASRIFTKALNCRNHARSCFTRVFCSAATIKDEYCSTRTAKAIALKFTPPAPIDEQPLMG
LHGYDFRHILLCARPQFSYLKMNLEQRFFSPKQHQNVIEVEVCGLLSKFTVWQGKESIDE
GRFITKCAEEAMLHIKRRHNPFGIVLRYQVGDTPTKQFLFALDASTNFKGMPICFAHNSG
TSNSHPSFDQKSVNVDASLVALVQLSSSMPIAGPPLDTSQLDIKLQPLMGLHCFKLDNIL
LCSRRGFWFLKLSLERRFFAANNYMTIVALDVGKKYTGVAVWHQGMEDIEAESTFFMEDM
EEQMLNIKEKFEPVGFVVGFPVGSPEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVN
EYGTSKNLAKRVKKFVEKDAKNWSGPGSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPP
EGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSS
LLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTIDLCSACLAGDDL
RKGGELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCGY

High Scoring Gene Products

Symbol, full name Information P value
AT3G61170 protein from Arabidopsis thaliana 2.9e-05
AT2G27610 protein from Arabidopsis thaliana 0.00040
ECB2
EARLY CHLOROPLAST BIOGENESIS2
protein from Arabidopsis thaliana 0.00098

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  007864
        (587 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2098901 - symbol:AT3G61170 species:3702 "Arabi...    94  2.9e-05   2
TAIR|locus:2038603 - symbol:AT2G27610 "AT2G27610" species...    90  0.00040   2
TAIR|locus:2196583 - symbol:ECB2 "EARLY CHLOROPLAST BIOGE...    93  0.00098   2


>TAIR|locus:2098901 [details] [associations]
            symbol:AT3G61170 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR011990
            InterPro:IPR002885 EMBL:CP002686 GenomeReviews:BA000014_GR
            EMBL:AL137898 Gene3D:1.25.40.10 PROSITE:PS51375 Pfam:PF01535
            Pfam:PF13812 TIGRFAMs:TIGR00756 Pfam:PF13041 HOGENOM:HOG000237570
            UniGene:At.172 IPI:IPI00530191 PIR:T47909 RefSeq:NP_191676.1
            UniGene:At.54031 ProteinModelPortal:Q9M2E7 SMR:Q9M2E7 PRIDE:Q9M2E7
            EnsemblPlants:AT3G61170.1 GeneID:825289 KEGG:ath:AT3G61170
            TAIR:At3g61170 InParanoid:Q9M2E7 OMA:NSMIVGC PhylomeDB:Q9M2E7
            ProtClustDB:CLSN2685238 Genevestigator:Q9M2E7 Uniprot:Q9M2E7
        Length = 783

 Score = 94 (38.1 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
 Identities = 17/34 (50%), Positives = 26/34 (76%)

Query:   554 GL-HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
             GL +H+E  AVA GL+ +P G P+R+I++ R+CG
Sbjct:   695 GLAYHSEKLAVAFGLLVVPSGAPIRIIKNLRVCG 728

 Score = 89 (36.4 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query:   496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554
             +ISG+  +G   EA  LF  M+ D I+ NE+T+  +   C +   L +G ++H  T++TG
Sbjct:    96 LISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLVLLLRGEQIHGHTIKTG 155


>TAIR|locus:2038603 [details] [associations]
            symbol:AT2G27610 "AT2G27610" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR011990 InterPro:IPR002885 EMBL:CP002685
            GenomeReviews:CT485783_GR Gene3D:1.25.40.10 PROSITE:PS51375
            EMBL:AC006232 EMBL:AC005824 Pfam:PF01535 TIGRFAMs:TIGR00756
            Pfam:PF13041 HOGENOM:HOG000237570 IPI:IPI00547006 PIR:G84674
            RefSeq:NP_180329.1 UniGene:At.13265 UniGene:At.66363
            ProteinModelPortal:Q9ZUW3 SMR:Q9ZUW3 PRIDE:Q9ZUW3
            EnsemblPlants:AT2G27610.1 GeneID:817307 KEGG:ath:AT2G27610
            GeneFarm:3453 TAIR:At2g27610 eggNOG:NOG320969 InParanoid:Q9ZUW3
            OMA:IVAWSAM PhylomeDB:Q9ZUW3 ProtClustDB:CLSN2683516
            Genevestigator:Q9ZUW3 Uniprot:Q9ZUW3
        Length = 868

 Score = 90 (36.7 bits), Expect = 0.00040, Sum P(2) = 0.00040
 Identities = 20/60 (33%), Positives = 35/60 (58%)

Query:   496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554
             +ISG++ NG   EALG+F +MR++Y+  +E +   +   C    +LR   +LH   ++ G
Sbjct:   266 MISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYG 325

 Score = 83 (34.3 bits), Expect = 0.00040, Sum P(2) = 0.00040
 Identities = 14/30 (46%), Positives = 22/30 (73%)

Query:   557 HTEMKAVALGLISLPDGMPVRVIRSARMCG 586
             H+E  A+A GLI+ P G P+ +I++ R+CG
Sbjct:   799 HSERLAIAFGLIATPKGSPLLIIKNLRVCG 828


>TAIR|locus:2196583 [details] [associations]
            symbol:ECB2 "EARLY CHLOROPLAST BIOGENESIS2" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0009451 "RNA modification" evidence=IMP] [GO:0009658
            "chloroplast organization" evidence=IMP] [GO:0040007 "growth"
            evidence=IMP] [GO:0009416 "response to light stimulus"
            evidence=IEP] InterPro:IPR011990 InterPro:IPR002885 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0040007 GO:GO:0009507 GO:GO:0009658
            EMBL:AC013453 GO:GO:0009416 Gene3D:1.25.40.10 PROSITE:PS51375
            Pfam:PF01535 Pfam:PF13812 TIGRFAMs:TIGR00756 GO:GO:0009451
            Pfam:PF13041 HOGENOM:HOG000237570 IPI:IPI00522462 PIR:H86288
            RefSeq:NP_173004.1 UniGene:At.41931 ProteinModelPortal:Q9M9E2
            SMR:Q9M9E2 PRIDE:Q9M9E2 EnsemblPlants:AT1G15510.1 GeneID:838121
            KEGG:ath:AT1G15510 GeneFarm:3519 TAIR:At1g15510 eggNOG:NOG295763
            InParanoid:Q9M9E2 OMA:FCGHSER PhylomeDB:Q9M9E2 ProtClustDB:PLN03077
            ArrayExpress:Q9M9E2 Genevestigator:Q9M9E2 Uniprot:Q9M9E2
        Length = 866

 Score = 93 (37.8 bits), Expect = 0.00098, Sum P(2) = 0.00098
 Identities = 31/113 (27%), Positives = 54/113 (47%)

Query:   443 DVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSL 502
             DV+N ++++  YV   ++    L  D + R D+++W+++               ISG+  
Sbjct:   232 DVVNALITM--YVKCGDVKSARLLFDRMPRRDIISWNAM---------------ISGYFE 274

Query:   503 NGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554
             NG   E L LF  MR   ++ +  T+  + SAC    D R G ++H   + TG
Sbjct:   275 NGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTG 327

 Score = 76 (31.8 bits), Expect = 0.00098, Sum P(2) = 0.00098
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query:   557 HTEMKAVALGLISLPDGMPVRVIRSARMC 585
             H+E KA+A GLI+   GMP+ V ++  MC
Sbjct:   800 HSERKAIAFGLINTVPGMPIWVTKNLSMC 828


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.137   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      587       557   0.00098  119 3  11 22  0.48    33
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  626 (67 KB)
  Total size of DFA:  340 KB (2170 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  44.62u 0.11s 44.73t   Elapsed:  00:00:02
  Total cpu time:  44.62u 0.11s 44.73t   Elapsed:  00:00:02
  Start:  Sat May 11 00:54:48 2013   End:  Sat May 11 00:54:50 2013

Back to top