BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007864
(587 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296084954|emb|CBI28363.3| unnamed protein product [Vitis vinifera]
Length = 930
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 52/86 (60%), Gaps = 16/86 (18%)
Query: 470 IKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI- 528
+++PD WS+L ISG S NG +AEAL LF+ M+ D I+ANEFT
Sbjct: 424 VEQPDTAPWSAL---------------ISGHSWNGCFAEALKLFRKMQFDGIKANEFTFT 468
Query: 529 DLCSACLAGDDLRKGGELHHKTLRTG 554
+ ACLA ++LRKG ELH K LR+G
Sbjct: 469 SVILACLALENLRKGKELHCKILRSG 494
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 30/34 (88%)
Query: 553 TGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
GLHHTEMKA+A GLISLP GMPVRV+++ RMCG
Sbjct: 858 VGLHHTEMKALAFGLISLPHGMPVRVVKNVRMCG 891
>gi|225436291|ref|XP_002269762.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 906
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 52/86 (60%), Gaps = 16/86 (18%)
Query: 470 IKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI- 528
+++PD WS+L ISG S NG +AEAL LF+ M+ D I+ANEFT
Sbjct: 400 VEQPDTAPWSAL---------------ISGHSWNGCFAEALKLFRKMQFDGIKANEFTFT 444
Query: 529 DLCSACLAGDDLRKGGELHHKTLRTG 554
+ ACLA ++LRKG ELH K LR+G
Sbjct: 445 SVILACLALENLRKGKELHCKILRSG 470
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 30/34 (88%)
Query: 553 TGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
GLHHTEMKA+A GLISLP GMPVRV+++ RMCG
Sbjct: 834 VGLHHTEMKALAFGLISLPHGMPVRVVKNVRMCG 867
>gi|115446475|ref|NP_001047017.1| Os02g0529900 [Oryza sativa Japonica Group]
gi|49388326|dbj|BAD25438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113536548|dbj|BAF08931.1| Os02g0529900 [Oryza sativa Japonica Group]
gi|125582364|gb|EAZ23295.1| hypothetical protein OsJ_06992 [Oryza sativa Japonica Group]
gi|215696993|dbj|BAG90987.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 787
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 16/85 (18%)
Query: 471 KRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-ID 529
K P VAWS+ +ISG LNG + A+ LF+TM++++++ NEFT
Sbjct: 444 KDPCTVAWSA---------------IISGSCLNGQFERAIHLFRTMQLEHVQPNEFTYTS 488
Query: 530 LCSACLAGDDLRKGGELHHKTLRTG 554
+ +AC+A D+ G E+H ++R G
Sbjct: 489 VLTACMALGDVVSGMEIHSNSIRNG 513
>gi|125539724|gb|EAY86119.1| hypothetical protein OsI_07491 [Oryza sativa Indica Group]
Length = 787
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 16/85 (18%)
Query: 471 KRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-ID 529
K P VAWS+ +ISG LNG + A+ LF+TM++++++ NEFT
Sbjct: 444 KDPCTVAWSA---------------IISGSCLNGQFERAIHLFRTMQLEHVQPNEFTYTS 488
Query: 530 LCSACLAGDDLRKGGELHHKTLRTG 554
+ +AC+A D+ G E+H ++R G
Sbjct: 489 VLTACMALGDVVSGMEIHSNSIRNG 513
>gi|297743473|emb|CBI36340.3| unnamed protein product [Vitis vinifera]
Length = 630
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGGELHHKTLRTG 554
+++ +S NG + EAL F M VD + NE+T L ++C + E K
Sbjct: 501 ILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCADIAAVFHDVEDEQKREYVS 560
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMC 585
+H+E A+A GL+ P G P+RVI++ RMC
Sbjct: 561 -YHSEKLAIAYGLMKTPSGAPIRVIKNLRMC 590
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 439 AARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVIS 498
A + +++ I Y +I+V + DG+++ ++V+W +L+ +
Sbjct: 288 ATKDNIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGALM---------------A 332
Query: 499 GFSLNGWYAEALGLFQTM-RVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
G+ NG E L LF+TM VDY+ NE+ + S+C + +G + H L++GL
Sbjct: 333 GYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGL 391
>gi|225459405|ref|XP_002284293.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Vitis vinifera]
Length = 595
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 441 RRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGF 500
+ DV G +G Y EIL DG+K+ + V W+S +I+G+
Sbjct: 296 KEDVFIGTSLVGMYAKCGEILDSRKVFDGMKKRNTVTWTS---------------IIAGY 340
Query: 501 SLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLH 556
+ NG EA+ LF+ M+ I AN T + + AC + +L G E+H + ++ +
Sbjct: 341 ARNGQGEEAISLFRVMKRRKIFANNLTVVSILRACGSTRNLLMGKEVHAQIMKNSMQ 397
>gi|297740419|emb|CBI30601.3| unnamed protein product [Vitis vinifera]
Length = 501
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 45/177 (25%)
Query: 454 YVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVL------------------ 495
Y V ++ + + IK+PD+V+W+++++ + ++ L
Sbjct: 255 YAKVGDLADAISVFEKIKQPDIVSWNAVIAAYAQYGQGEEALKLFLEMQDMELKPDRGIV 314
Query: 496 ----VISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSAC-LAGDDLRKGGELHHK 549
+I G + +G +AL LF M + + N T + + AC AG K EL
Sbjct: 315 SWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLIYAKLDELSDL 374
Query: 550 TLRTG---------------------LHHTEMKAVALGLISLPDGMPVRVIRSARMC 585
+ G HH+E AVA GLI+ P G P+RV ++ R+C
Sbjct: 375 MDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVC 431
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 16/91 (17%)
Query: 466 FLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANE 525
+D PDLV+WS+L ISG++ NG AL F M + ++ NE
Sbjct: 103 LVDESSEPDLVSWSAL---------------ISGYAQNGLGGGALMAFHEMHLLGVKCNE 147
Query: 526 FTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
FT + AC DLR G ++H + +G
Sbjct: 148 FTFSSVLKACSIVKDLRIGKQVHGVVVVSGF 178
>gi|413937111|gb|AFW71662.1| hypothetical protein ZEAMMB73_019211 [Zea mays]
Length = 798
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 487 EWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGE 545
EW++ ISG LNG Y A+ LF+ M+ ++++ NEFT + +AC+A D G E
Sbjct: 463 EWSA-----AISGNCLNGQYGRAVQLFRRMQSEHVQPNEFTYTAILTACMALGDTASGVE 517
Query: 546 LHHKTLRTG 554
+H ++R G
Sbjct: 518 IHSNSIRNG 526
>gi|413939497|gb|AFW74048.1| hypothetical protein ZEAMMB73_972326 [Zea mays]
Length = 576
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 16/115 (13%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFS 501
+DV V + Y V EI + D + DLVAW+ L + G+
Sbjct: 267 KDVRVWSVMVSGYARVGEIGMARKLFDEMPNKDLVAWTVL---------------VGGYV 311
Query: 502 LNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGL 555
G Y EALGLF+ M +EA+E T + + SAC D + LH++ + GL
Sbjct: 312 QAGRYKEALGLFEEMEAAGLEADEMTVVTVLSACAQNDAISLVKRLHYRMNQNGL 366
>gi|242065278|ref|XP_002453928.1| hypothetical protein SORBIDRAFT_04g021580 [Sorghum bicolor]
gi|241933759|gb|EES06904.1| hypothetical protein SORBIDRAFT_04g021580 [Sorghum bicolor]
Length = 798
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 471 KRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTID- 529
K P WS+ ISG LNG Y A+ LF+ M+ ++++ NEFT
Sbjct: 456 KNPGTAVWSA---------------AISGNCLNGQYGRAVHLFRRMQSEHVQPNEFTYTA 500
Query: 530 LCSACLAGDDLRKGGELHHKTLRTG 554
+ +AC+A D G E+H ++R+G
Sbjct: 501 ILTACMALGDTDSGMEIHSNSIRSG 525
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 52/125 (41%), Gaps = 28/125 (22%)
Query: 444 VINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLN 503
V NG+V++ Y + I PDLV+W+S+LS + E N
Sbjct: 154 VANGLVTM--YSSCQSLRCAEKVFGSITSPDLVSWTSMLSAYTE---------------N 196
Query: 504 GWYAEALGLFQTMRVDYIEANEFTIDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAV 563
G AEAL LF M D I + FT+ + LR L H L LH +K
Sbjct: 197 GCDAEALMLFMEMARDGIACDAFTLSVA--------LRAASSLGHVGLGHQLHCCMIK-- 246
Query: 564 ALGLI 568
+GL+
Sbjct: 247 -MGLV 250
>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
Length = 719
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Query: 535 LAGDDLRKGGELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L DD +GGE K +R G HH+E AVA GLIS DG PV V+++ R+CG
Sbjct: 633 LVKDDGTRGGE---KEIRLG-HHSEKLAVAFGLISTKDGEPVLVVKNLRICG 680
>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Vitis vinifera]
Length = 719
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Query: 535 LAGDDLRKGGELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L DD +GGE K +R G HH+E AVA GLIS DG PV V+++ R+CG
Sbjct: 633 LVKDDGTRGGE---KEIRLG-HHSEKLAVAFGLISTKDGEPVLVVKNLRICG 680
>gi|357149296|ref|XP_003575063.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Brachypodium distachyon]
Length = 789
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 487 EWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGE 545
EW++ VISG LNG + AL LF+ M++D++ NEFT + +AC+ D+ G E
Sbjct: 452 EWSA-----VISGNCLNGQFERALHLFRRMQLDHVRPNEFTYTSVLTACIDLGDVVGGIE 506
Query: 546 LHHKTLRTG 554
+H ++R G
Sbjct: 507 IHGNSVRNG 515
>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
Length = 746
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 18/131 (13%)
Query: 438 WAARR--DVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVL 495
W+AR D + G +G Y EI D I D+VAW+++
Sbjct: 281 WSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAM-------------- 326
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554
I+G++ NG EA+ LF +MR+ + ++ T+ + SAC A L G EL R G
Sbjct: 327 -ITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRG 385
Query: 555 LHHTEMKAVAL 565
L+ AL
Sbjct: 386 LYSNVYVGTAL 396
>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
Length = 746
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 18/131 (13%)
Query: 438 WAARR--DVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVL 495
W+AR D + G +G Y EI D I D+VAW+++
Sbjct: 281 WSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAM-------------- 326
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554
I+G++ NG EA+ LF +MR+ + ++ T+ + SAC A L G EL R G
Sbjct: 327 -ITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRG 385
Query: 555 LHHTEMKAVAL 565
L+ AL
Sbjct: 386 LYSNVYVGTAL 396
>gi|302141658|emb|CBI18837.3| unnamed protein product [Vitis vinifera]
Length = 1589
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Query: 535 LAGDDLRKGGELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L DD +GGE K +R G HH+E AVA GLIS DG P+ V+++ R+CG
Sbjct: 259 LVKDDGTRGGE---KEIRLG-HHSEKLAVAFGLISTKDGEPILVVKNLRICG 306
>gi|359497341|ref|XP_003635488.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Vitis vinifera]
Length = 358
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Query: 535 LAGDDLRKGGELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L DD +GGE K +R G HH+E AVA GLIS DG P+ V+++ R+CG
Sbjct: 272 LVKDDGTRGGE---KEIRLG-HHSEKLAVAFGLISTKDGEPILVVKNLRICG 319
>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
Length = 767
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 18/131 (13%)
Query: 438 WAARR--DVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVL 495
W+AR D + G +G Y EI D I D+VAW+++
Sbjct: 281 WSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAM-------------- 326
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554
I+G++ NG EA+ LF +MR+ + ++ T+ + SAC A L G EL R G
Sbjct: 327 -ITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRG 385
Query: 555 LHHTEMKAVAL 565
L+ AL
Sbjct: 386 LYSNVYVGTAL 396
>gi|414887968|tpg|DAA63982.1| TPA: hypothetical protein ZEAMMB73_972364 [Zea mays]
Length = 700
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 16/124 (12%)
Query: 443 DVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSL 502
D + G +G Y E+ DGI+ D+VAW+++ I+G++
Sbjct: 253 DSLIGSALVGMYEKCGEMAEARRVFDGIRHKDVVAWNAM---------------ITGYAQ 297
Query: 503 NGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMK 561
NG EA+ LF +MR + ++ T + + S+C A L+ G EL +R GL++
Sbjct: 298 NGMSNEAIALFHSMREAGLCPDKITLVGVLSSCAAVGALKLGVELDTYAMRRGLYNNVYV 357
Query: 562 AVAL 565
AL
Sbjct: 358 GTAL 361
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 18/125 (14%)
Query: 447 GVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWY 506
G+ + Y+C + + DG++ LV+W+ ++I+G+S NG
Sbjct: 348 GISLLSLYICCGKPFAAQVLFDGMEHRSLVSWN---------------VMIAGYSQNGLP 392
Query: 507 AEALGLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
EA+ LF+ M D I+ E I +C AC LR G ELH L+ H TE V+
Sbjct: 393 DEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKA--HLTEDIFVSS 450
Query: 566 GLISL 570
+I +
Sbjct: 451 SIIDM 455
>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Glycine max]
Length = 591
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 15/140 (10%)
Query: 427 KPPDDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHE 486
+PP D F+ + ++N G+ +CV+ L D I PDL W+++L+ +
Sbjct: 135 QPPYDPFV------QNSLLNFYAKYGK-LCVSRYL-----FDQISEPDLATWNTMLAAYA 182
Query: 487 EWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGE 545
+ AS V + F EAL LF M++ I+ NE T + L SAC L +G
Sbjct: 183 QSASH--VSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQGAW 240
Query: 546 LHHKTLRTGLHHTEMKAVAL 565
H LR L AL
Sbjct: 241 AHGYVLRNNLKLNRFVGTAL 260
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 18/125 (14%)
Query: 447 GVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWY 506
G+ + Y+C + + DG++ LV+W+ ++I+G+S NG
Sbjct: 446 GISLLSLYICCGKPFAAQVLFDGMEHRSLVSWN---------------VMIAGYSQNGLP 490
Query: 507 AEALGLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
EA+ LF+ M D I+ E I +C AC LR G ELH L+ H TE V+
Sbjct: 491 DEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKA--HLTEDIFVSS 548
Query: 566 GLISL 570
+I +
Sbjct: 549 SIIDM 553
>gi|358357234|gb|AEU08457.1| pentatricopeptide repeat protein [Takakia lepidozioides]
Length = 152
Score = 47.8 bits (112), Expect = 0.018, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLIS+P MP+R+I++ R+CG
Sbjct: 90 HHSERLAIAFGLISMPTAMPIRIIKNLRVCG 120
>gi|413918945|gb|AFW58877.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 768
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 16/87 (18%)
Query: 470 IKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI- 528
I+ PDLV+W+SL I+ FS +G +EA+ LF MR ++ + T+
Sbjct: 310 IESPDLVSWNSL---------------INAFSADGLLSEAMVLFSEMRYSSLKPDGITVM 354
Query: 529 DLCSACLAGDDLRKGGELHHKTLRTGL 555
L AC+ D LR+G +H ++ GL
Sbjct: 355 ALLCACVGCDALRQGRSIHSYLVKLGL 381
>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Vitis vinifera]
Length = 703
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 439 AARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVIS 498
A + +++ I Y +I+V + DG+++ ++V+W +L+ +
Sbjct: 57 ATKDNIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGALM---------------A 101
Query: 499 GFSLNGWYAEALGLFQTM-RVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
G+ NG E L LF+TM VDY+ NE+ + S+C + +G + H L++GL
Sbjct: 102 GYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGL 160
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
+H+E A+A GL+ P G P+RVI++ RMC
Sbjct: 634 YHSEKLAIAYGLMKTPSGAPIRVIKNLRMC 663
>gi|302142629|emb|CBI19832.3| unnamed protein product [Vitis vinifera]
Length = 544
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFS 501
RD ++ I YV E+ FLDG+ +VAW+++ ISG+
Sbjct: 221 RDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAM---------------ISGYV 265
Query: 502 LNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRT 553
+G++ EAL +F+ M + I+ +EFT + SAC G ++H LRT
Sbjct: 266 HHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRT 318
>gi|18409250|ref|NP_564961.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75168871|sp|Q9C507.1|PP111_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial; Flags: Precursor
gi|12325094|gb|AAG52503.1|AC018364_21 hypothetical protein; 27026-24663 [Arabidopsis thaliana]
gi|12597785|gb|AAG60097.1|AC073178_8 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332196793|gb|AEE34914.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 787
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 470 IKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-I 528
IK +V W+S+L GFS NG EA+ LF M Y+E NE T +
Sbjct: 465 IKHRSVVTWNSMLC---------------GFSQNGNSVEAISLFDYMYHSYLEMNEVTFL 509
Query: 529 DLCSACLAGDDLRKGGELHHKTLRTGL 555
+ AC + L KG +HHK + +GL
Sbjct: 510 AVIQACSSIGSLEKGKWVHHKLIISGL 536
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 23/102 (22%)
Query: 473 PDLVAWSSLLSVHEEWAS-------------RRVV---LVISGFSLNGWYAEALGLFQTM 516
PD W+SL++V+ + S R VV +I+GF G+ + A+ LF M
Sbjct: 161 PDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEM 220
Query: 517 RVDYIEANEFT----IDLCSACLAGDDLRKGGELHHKTLRTG 554
R + +EANEFT + CS CL DL G ++H + ++ G
Sbjct: 221 RREGVEANEFTYATALKACSMCL---DLEFGKQVHAEAIKVG 259
>gi|358357210|gb|AEU08445.1| pentatricopeptide repeat protein [Takakia lepidozioides]
Length = 152
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLIS P GMP+R+I++ R+CG
Sbjct: 90 HHSEKLAIAFGLISTPSGMPIRIIKNLRVCG 120
>gi|357143516|ref|XP_003572948.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Brachypodium distachyon]
Length = 791
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 25/121 (20%)
Query: 436 RLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVL 495
+LW+A +++G GE ++ DG+ DLVAW+ L
Sbjct: 272 KLWSA---MLSGYARSGEVRTARDLF------DGMPEKDLVAWTVL-------------- 308
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTG 554
I GF G Y +AL LF+ M EA+E T + L SAC+ + LHH+ G
Sbjct: 309 -IGGFVQAGRYKDALVLFEEMEEAGFEADEVTVVTLLSACVHYGKIDVAKRLHHRARHHG 367
Query: 555 L 555
L
Sbjct: 368 L 368
>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
[Vitis vinifera]
Length = 799
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFS 501
RD ++ I YV E+ FLDG+ +VAW+++ ISG+
Sbjct: 223 RDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAM---------------ISGYV 267
Query: 502 LNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRT 553
+G++ EAL +F+ M + I+ +EFT + SAC G ++H LRT
Sbjct: 268 HHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRT 320
>gi|358357206|gb|AEU08443.1| pentatricopeptide repeat protein [Takakia lepidozioides]
Length = 152
Score = 47.0 bits (110), Expect = 0.028, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLIS P G P+RVI++ R+CG
Sbjct: 90 HHSERLAIAFGLISTPQGTPIRVIKNLRVCG 120
>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Vitis vinifera]
Length = 703
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 30/40 (75%)
Query: 547 HHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+ +R+ HH+E AVA GL+ +P+GMP+RV+++ R+CG
Sbjct: 625 EEEKVRSLGHHSERLAVAFGLLKVPEGMPIRVMKNLRVCG 664
>gi|449451241|ref|XP_004143370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g03800-like [Cucumis sativus]
Length = 908
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 18/159 (11%)
Query: 400 LQAKRQLRRFISDVDSSYLPPEGCPNYKPPD--DKFIARLWAARRDVINGVVSIGEYVCV 457
L A R L +S + S + Y PD A+ D+ G I Y+ +
Sbjct: 84 LFASRSLNTSLSTIASPFDLLRLSTRYGDPDLARAVHAQFLKLEEDIFLGNALISAYLKL 143
Query: 458 AEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMR 517
+ G+ P++V++++L ISGFS + W EA+ LF M
Sbjct: 144 GLVRDADKVFSGLSCPNVVSYTAL---------------ISGFSKSDWEDEAVELFFAML 188
Query: 518 VDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGL 555
IE NE+T + + +AC+ D + G ++H ++ GL
Sbjct: 189 DSGIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKLGL 227
>gi|357120534|ref|XP_003561982.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Brachypodium distachyon]
Length = 989
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 18/105 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
D + + DL++W+++ ISG+SLNG EA+ Q M+ D + AN
Sbjct: 198 FDFMGQKDLISWNAM---------------ISGYSLNGSLREAVEATQEMQQDGMRANAS 242
Query: 527 T-IDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALGLISL 570
T + + AC A D GG LH L+ G+ E ++A LISL
Sbjct: 243 TLVCIAGACGAAGDSDAGGSLHAFALKCGVLGDE--SLAPALISL 285
>gi|449482566|ref|XP_004156326.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g03800-like [Cucumis sativus]
Length = 908
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 18/159 (11%)
Query: 400 LQAKRQLRRFISDVDSSYLPPEGCPNYKPPD--DKFIARLWAARRDVINGVVSIGEYVCV 457
L A R L +S + S + Y PD A+ D+ G I Y+ +
Sbjct: 84 LFASRSLNTSLSTIASPFDLLRLSTRYGDPDLARAVHAQFLKLEEDIFLGNALISAYLKL 143
Query: 458 AEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMR 517
+ G+ P++V++++L ISGFS + W EA+ LF M
Sbjct: 144 GLVRDADKVFSGLSCPNVVSYTAL---------------ISGFSKSDWEDEAVELFFAML 188
Query: 518 VDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGL 555
IE NE+T + + +AC+ D + G ++H ++ GL
Sbjct: 189 DSGIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKLGL 227
>gi|125553402|gb|EAY99111.1| hypothetical protein OsI_21070 [Oryza sativa Indica Group]
Length = 419
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFTIDLCSACLAGDDLRKGGELH----HKTL 551
+++ ++ N + +AL LF M ++ + NEFT + A K LH +
Sbjct: 286 IMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAALAFLKNVALHDVEDEQKE 345
Query: 552 RTGLHHTEMKAVALGLISLPDGMPVRVIRSARMC 585
++H+E A+A GLI P G +R++++ R+C
Sbjct: 346 EHLMYHSEKLALAFGLIRTPKGEAIRIMKNVRIC 379
>gi|242051158|ref|XP_002463323.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
gi|241926700|gb|EER99844.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
Length = 576
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 443 DVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSL 502
D + G +G Y E+ DGI D+VAW+++ I+G++
Sbjct: 220 DSLIGSALVGMYEKCGEMEEARRVFDGISNKDVVAWNAM---------------ITGYAQ 264
Query: 503 NGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMK 561
NG EA+ LF +MR + ++ T + + S+C A L G EL L GL+
Sbjct: 265 NGMSNEAIALFHSMREAGLRPDKITLVGVLSSCAAVGALELGVELDGYALHRGLYSNVYV 324
Query: 562 AVAL 565
AL
Sbjct: 325 GTAL 328
>gi|296089822|emb|CBI39641.3| unnamed protein product [Vitis vinifera]
Length = 251
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 30/38 (78%)
Query: 549 KTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+ +R+ HH+E AVA GL+ +P+GMP+RV+++ R+CG
Sbjct: 175 EKVRSLGHHSERLAVAFGLLKVPEGMPIRVMKNLRVCG 212
>gi|358357212|gb|AEU08446.1| pentatricopeptide repeat protein [Takakia lepidozioides]
Length = 152
Score = 45.8 bits (107), Expect = 0.060, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLIS P G P+R+I++ R+CG
Sbjct: 90 HHSEKLAIAFGLISTPPGTPIRIIKNLRVCG 120
>gi|449444600|ref|XP_004140062.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17210-like [Cucumis sativus]
Length = 747
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 465 LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN 524
+ DG+ + D+VAWS++ I+GF+ NG EA+ +F+ M + I N
Sbjct: 407 MVFDGMNKKDVVAWSTM---------------IAGFARNGKPDEAISVFKQMNEEVIPNN 451
Query: 525 EFTIDLCSACLAGDDLRKGGELHHKTLRTGL 555
++L AC +LR+ H +R GL
Sbjct: 452 VSIMNLMEACAVSAELRQSKWAHGIAVRRGL 482
>gi|449523019|ref|XP_004168522.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17210-like [Cucumis sativus]
Length = 747
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 465 LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN 524
+ DG+ + D+VAWS++ I+GF+ NG EA+ +F+ M + I N
Sbjct: 407 MVFDGMNKKDVVAWSTM---------------IAGFARNGKPDEAISVFKQMNEEVIPNN 451
Query: 525 EFTIDLCSACLAGDDLRKGGELHHKTLRTGL 555
++L AC +LR+ H +R GL
Sbjct: 452 VSIMNLMEACAVSAELRQSKWAHGIAVRRGL 482
>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Glycine max]
Length = 747
Score = 45.4 bits (106), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 78/355 (21%), Positives = 136/355 (38%), Gaps = 98/355 (27%)
Query: 312 EPVGFVVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK 370
EP F +G + S + ++ +Q H +A +S L S F + LV YG ++
Sbjct: 372 EPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLIS---FITVSNALVTLYGKCGSIED 428
Query: 371 RVKKFVEKDAKNWSGPGSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPD 430
+ F E ++ S+ + S + +A LR F S + +KP
Sbjct: 429 SHRLFSEM---SYVDEVSWTALVSGYAQFGKANETLRLFESML---------AHGFKPDK 476
Query: 431 DKFIARLWAARRDVINGVVSIG------------------EYVCVAEILVMLLFLDGIKR 472
FI L A R G+V G Y C+ ++ L+ ++
Sbjct: 477 VTFIGVLSACSRA---GLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARK 533
Query: 473 --------PDLVAWSSLLS---VHE-----EWASRRV-----------VLVISGFSLNGW 505
PD + W+SLLS H +WA+ + +L+ S ++ G
Sbjct: 534 FINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGK 593
Query: 506 YAEALGLFQTMR------------VDYI-EANEFTIDLCSACLAGDDLRKGGELHHKTLR 552
+ E L + MR + Y + + F+ D S + + +L++K ++
Sbjct: 594 WEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQ 653
Query: 553 TGL---------------------HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
G HH+E A+A GLI +P G+P+RV+++ R+CG
Sbjct: 654 EGYVPDMNSVLHDVDDSEKIKMLNHHSEKLAIAFGLIFIPPGLPIRVVKNLRVCG 708
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 17/90 (18%)
Query: 465 LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN 524
LF D ++ D ++W+++ I+GF+ NG EA+ LF+ MR++ +E +
Sbjct: 230 LFYD-MQEKDSISWTAM---------------IAGFTQNGLDREAIDLFREMRLENLEMD 273
Query: 525 EFTI-DLCSACLAGDDLRKGGELHHKTLRT 553
++T + +AC L++G ++H +RT
Sbjct: 274 QYTFGSVLTACGGVMALQEGKQVHAYIIRT 303
>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 889
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 32/43 (74%)
Query: 544 GELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
G + ++LR+ +HH+E AVA G+++LP MP+ ++++ R+CG
Sbjct: 808 GYVRTESLRSEIHHSEKLAVAFGIMNLPAWMPIHIMKNLRICG 850
>gi|224092607|ref|XP_002309680.1| predicted protein [Populus trichocarpa]
gi|222855656|gb|EEE93203.1| predicted protein [Populus trichocarpa]
Length = 500
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 17/141 (12%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVH-------------EEW 488
+D+ + + I Y + + L D + D+V+W+S++S + E
Sbjct: 145 KDLSSFNIMISGYSSIGKTLSARSIFDNMAEKDIVSWNSMISAYIQGEDMERACDLFREM 204
Query: 489 ASRRVV---LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGG 544
++ ++ ++ GF N YAE L LF M+ + T+ + SAC L+KG
Sbjct: 205 PAKNIITWNTMVKGFLQNQLYAEVLDLFDEMKTTNCLPDYLTVTGVLSACAHSGSLKKGT 264
Query: 545 ELHHKTLRTGLHHTEMKAVAL 565
E+H + GL + AL
Sbjct: 265 EVHIYAIDNGLASSPHVTTAL 285
>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Cucumis sativus]
Length = 697
Score = 45.4 bits (106), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 16/132 (12%)
Query: 443 DVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSL 502
DV G I Y +L F D ++ ++V+W+S +I+ +
Sbjct: 258 DVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTS---------------IIAAYFQ 302
Query: 503 NGWYAEALGLFQTMRVDYIEANEFTIDLCSACLAG-DDLRKGGELHHKTLRTGLHHTEMK 561
N ++ EAL LF M +D I NE+T+ + AG L G +LH + ++GL M
Sbjct: 303 NEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLGDQLHARAEKSGLKGNVMV 362
Query: 562 AVALGLISLPDG 573
AL ++ G
Sbjct: 363 GNALIIMYFKSG 374
>gi|357145591|ref|XP_003573696.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Brachypodium distachyon]
Length = 618
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 16/119 (13%)
Query: 441 RRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGF 500
+ D+ G + Y + E+ D + R + + W+S+ ISG+
Sbjct: 314 KDDIHVGSALVTMYARLGEVFDAQAVFDKMARRNTITWTSM---------------ISGY 358
Query: 501 SLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHT 558
+ +G +A+ LFQ M++ + N TI L SAC + LR G ELH + ++ +
Sbjct: 359 AQSGHGEKAILLFQNMKMRRVSINNLTIVGLLSACGSIQSLRLGKELHAQIIKNSIQEN 417
>gi|255542634|ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548341|gb|EEF49832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 736
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 17/107 (15%)
Query: 467 LDGIKRPDLVAWSSLLS-------------VHEEWASRRVVL---VISGFSLNGWYAEAL 510
D + D V+W++++S V +E R V+ +ISG S N Y ++L
Sbjct: 15 FDDMPTRDTVSWNTMVSGFLRNGDLDTGRQVFDEMLERNVITWTAIISGLSQNEMYEDSL 74
Query: 511 GLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLH 556
GLF MR IE N T + +AC L KG ++H + G+
Sbjct: 75 GLFVQMRCGLIEPNFLTYLSSLTACSGLQALEKGRQIHGLVWKLGIQ 121
>gi|297735121|emb|CBI17483.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 18/124 (14%)
Query: 439 AARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVIS 498
AA V N ++++ Y ++ + + R D+V+WS+ +I+
Sbjct: 357 AASLSVENSIMTM--YAKCGQLTSSSVIFHEMTRRDIVSWST---------------IIA 399
Query: 499 GFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHH 557
G+S G +EA L MR++ + EF + + SAC L G +LH L GL H
Sbjct: 400 GYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEH 459
Query: 558 TEMK 561
T MK
Sbjct: 460 TAMK 463
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 16/87 (18%)
Query: 470 IKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-I 528
+K DLVAW+S+ I+GF+LNG EAL LF+ M V+ +E + FT +
Sbjct: 179 MKERDLVAWNSM---------------INGFALNGRPNEALTLFREMSVEGVEPDGFTVV 223
Query: 529 DLCSACLAGDDLRKGGELHHKTLRTGL 555
L SA L G +H L+ GL
Sbjct: 224 SLLSASAELGALELGRRVHVYLLKVGL 250
>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Brachypodium distachyon]
Length = 608
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
Query: 447 GVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWY 506
G +G Y E+ DGI D+VAW+++ I+G++ NG
Sbjct: 256 GSALVGMYEKCGEMTEARRVFDGIAHKDVVAWNAM---------------ITGYAQNGMS 300
Query: 507 AEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
EA+ LF +MR + ++ T + + SAC A L G EL GL+ AL
Sbjct: 301 KEAIALFHSMRQEGASPDKITLVGVLSACAAVGALELGTELDAYASHRGLYGNVYVGTAL 360
>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930 [Vitis vinifera]
gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
Length = 743
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 76/358 (21%), Positives = 138/358 (38%), Gaps = 96/358 (26%)
Query: 308 KEKFEPVGFVVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSK 366
+ EP F +G + S + ++ +Q H +A +S L S I L + G+++
Sbjct: 364 RNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTE 423
Query: 367 NLAKRVKKFVEKDAKNWSG--PGSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCP 424
N + + +D +W+ G K+ T L R ++
Sbjct: 424 NSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGL-----FERMLAH------------ 466
Query: 425 NYKPPDDKFIARLWAARRDVI--------------NGVVSIGEY-VCVAEILVMLLFLDG 469
KP FI L A R + +G++ I ++ C+ ++L L+
Sbjct: 467 GLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEE 526
Query: 470 IKR--------PDLVAWSSLLS---VHEE-----WASRRV-----------VLVISGFSL 502
+ PD+V W++LLS VH + WA+ + VL+ S ++
Sbjct: 527 ARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYAS 586
Query: 503 NGWYAEALGLFQTMRVDYI-------------EANEFTIDLCSACLAGDDLRKGGELHHK 549
G + + L + MR + + + F+ D S+ G + +L++K
Sbjct: 587 KGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYK 646
Query: 550 TLRTGL---------------------HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+ G HH+E A+A GLI +P G+P+RVI++ R+CG
Sbjct: 647 MIEEGYVPDMSSVLHDVEESEKIKMLNHHSEKLAIAFGLIFVPPGLPIRVIKNLRVCG 704
>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
Length = 743
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 16/98 (16%)
Query: 469 GIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI 528
G+K D ++W+++ I+G NG AEA+ LF+ MR + + +++T
Sbjct: 229 GMKERDSISWTTM---------------ITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTF 273
Query: 529 -DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
+ +AC L++G E+H +R+G +H AL
Sbjct: 274 GSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSAL 311
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GL+ +P G+P+RV+++ R+CG
Sbjct: 674 HHSEKLAIAFGLLFIPHGLPIRVVKNLRVCG 704
>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
Length = 706
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 27/31 (87%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E +AVA GL+ +P+GMP+RV+++ R+CG
Sbjct: 637 YHSERQAVAYGLLKIPEGMPIRVMKNLRVCG 667
>gi|302776458|ref|XP_002971391.1| hypothetical protein SELMODRAFT_95540 [Selaginella moellendorffii]
gi|300160523|gb|EFJ27140.1| hypothetical protein SELMODRAFT_95540 [Selaginella moellendorffii]
Length = 598
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 17/101 (16%)
Query: 465 LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN 524
L D I++ DL +W+ ++I+ F+ NG A+G+F+ M I+ N
Sbjct: 83 LAFDSIRKKDLFSWN---------------IMIAAFAENGCLDRAVGVFELMEPARIKRN 127
Query: 525 EFTIDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
T + AG DL +G ++H +GL EM A AL
Sbjct: 128 RGT--FVAVLAAGLDLEQGKKIHDSVHSSGLERNEMVATAL 166
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 549 KTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
K +R LHH+E A+ GL+S PDG P+ V+++ R+C
Sbjct: 522 KKVRMLLHHSEKLAIMFGLMSTPDGSPLFVLKNLRVCA 559
>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
Length = 798
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 27/31 (87%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E +AVA GL+ +P+GMP+RV+++ R+CG
Sbjct: 637 YHSERQAVAYGLLKIPEGMPIRVMKNLRVCG 667
>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
Length = 798
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 27/31 (87%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E +AVA GL+ +P+GMP+RV+++ R+CG
Sbjct: 637 YHSERQAVAYGLLKIPEGMPIRVMKNLRVCG 667
>gi|357128364|ref|XP_003565843.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Brachypodium distachyon]
Length = 728
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 89/239 (37%), Gaps = 38/239 (15%)
Query: 345 LDSLPNFKGMPICLVNEYGTSKNLAKRVKKFVEKDAKNWSGPGSYPSTKSFHTNRLQAKR 404
LD+ P L +G V + +D W+ + S + +AK
Sbjct: 249 LDATPYVANTLATLYARWGDVGRALAAVGRMGSRDVAAWT------TVISSYVQTGRAKE 302
Query: 405 QLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEILVML 464
+ F++ V + + N P++ A + AA D VC+ E L
Sbjct: 303 AIEAFVAMVRNEAV------NAASPNEYTYAAVIAACADT--------SCVCLGEQLHGQ 348
Query: 465 LFLDGIKRPDLVA-------------WSSLLSVHEEWASRRVV---LVISGFSLNGWYAE 508
+ G VA S+ +V +E A++ VV +ISG++ G E
Sbjct: 349 VAQRGFASARSVANSLVTLYARVAGRLSAADAVFQESAAKDVVSWSAIISGYAQEGLAGE 408
Query: 509 ALGLFQTMRVDYI-EANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
A LF MR + NEFT+ L S C L G +LH + GL H M AL
Sbjct: 409 AFALFTEMRRHHCPRPNEFTLASLLSVCATAATLDAGRQLHALVMAAGLEHHAMIRSAL 467
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 454 YVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLF 513
Y +I L D + DLV+W+S+ ISG++ NG+ +E LG F
Sbjct: 863 YAKCGDIEAARLVFDKMAVRDLVSWTSM---------------ISGYAHNGYNSETLGFF 907
Query: 514 QTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
MR + N +I + AC LRKG H ++TG + A A+
Sbjct: 908 DLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAI 960
>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
Length = 865
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 544 GELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
G + + R+ +HH+E AVA GL++LP MP+ ++++ R+CG
Sbjct: 784 GYVRTDSTRSEIHHSEKLAVAFGLMTLPTWMPIHIMKNLRICG 826
>gi|297738048|emb|CBI27249.3| unnamed protein product [Vitis vinifera]
Length = 707
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 16/83 (19%)
Query: 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCS 532
D++AW+S +ISG++ NG+ EAL LF MR D + + T + + S
Sbjct: 450 DVIAWNS---------------IISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLS 494
Query: 533 ACLAGDDLRKGGELHHKTLRTGL 555
AC + R G LH ++ GL
Sbjct: 495 ACASVGAYRVGSSLHGYAIKAGL 517
>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
gi|223942207|gb|ACN25187.1| unknown [Zea mays]
gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
Length = 885
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 544 GELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
G + + R+ +HH+E AVA GL++LP MP+ ++++ R+CG
Sbjct: 804 GYVRTDSTRSEIHHSEKLAVAFGLMTLPTWMPIHIMKNLRICG 846
>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
[Vitis vinifera]
Length = 575
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLS-------------VHEEW 488
R+V+ V + Y AE+ +G+ + + AWSS++S + +
Sbjct: 222 RNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRI 281
Query: 489 ASRRVV---LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGG 544
R +V +ISG++ NG+ EAL F M+ + E +E TI + SAC L G
Sbjct: 282 PVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGK 341
Query: 545 ELHHKTLRTGL 555
++HH G+
Sbjct: 342 KIHHMMNHKGI 352
>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 443 DVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSL 502
DV+N ++++ YV +I L D + R D ++W+++ ISG+
Sbjct: 231 DVVNALITM--YVKCGDIFSARLVFDRMPRRDRISWNAM---------------ISGYFE 273
Query: 503 NGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
N E L LF MR +++ + T+ + SAC A D R G E+H ++TG
Sbjct: 274 NDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGF 327
>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial [Vitis vinifera]
gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
Length = 700
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 16/83 (19%)
Query: 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCS 532
D++AW+S +ISG++ NG+ EAL LF MR D + + T + + S
Sbjct: 403 DVIAWNS---------------IISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLS 447
Query: 533 ACLAGDDLRKGGELHHKTLRTGL 555
AC + R G LH ++ GL
Sbjct: 448 ACASVGAYRVGSSLHGYAIKAGL 470
>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Vitis vinifera]
Length = 872
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 443 DVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSL 502
DV+N ++++ YV +I L D + R D ++W+++ ISG+
Sbjct: 231 DVVNALITM--YVKCGDIFSARLVFDRMPRRDRISWNAM---------------ISGYFE 273
Query: 503 NGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
N E L LF MR +++ + T+ + SAC A D R G E+H ++TG
Sbjct: 274 NDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGF 327
>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
Length = 865
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 552 RTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
R+ +HH+E AVA GL+SLP MP+ ++++ R+CG
Sbjct: 792 RSEIHHSEKLAVAFGLMSLPAWMPIHIMKNLRICG 826
>gi|302800501|ref|XP_002982008.1| hypothetical protein SELMODRAFT_115449 [Selaginella moellendorffii]
gi|300150450|gb|EFJ17101.1| hypothetical protein SELMODRAFT_115449 [Selaginella moellendorffii]
Length = 278
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 18/87 (20%)
Query: 466 FLDGIKRPDLVAWSSLLSVHEEWA--------------SRRVV---LVISGFSLNGWYAE 508
D I RPD+VAW++++ + + VV ++++G+S G Y
Sbjct: 88 LFDAIARPDVVAWNTMIEAYANAGQLDQARALFDAMPVDKNVVSWTVMLTGYSQLGQYER 147
Query: 509 ALGLFQTMRVDYIEANEFTID-LCSAC 534
ALG+FQ M +D I+ ++ T+ + SAC
Sbjct: 148 ALGIFQRMDLDGIQQDDMTLTAILSAC 174
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 16/79 (20%)
Query: 470 IKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-I 528
I+ D+++W+S+LS G + +G++ EAL LFQ M+++ IE +E T +
Sbjct: 274 IREKDVLSWTSMLS---------------GLAKSGYFQEALALFQKMQLNKIELDEITLV 318
Query: 529 DLCSACLAGDDLRKGGELH 547
+ SAC L +G +H
Sbjct: 319 GVLSACAQTGALDQGKYIH 337
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 557 HTEMKAVALGLISLPDGMPVRVIRSARMC 585
H+E A+ALGLIS P G P+R++++ R+C
Sbjct: 619 HSEKLAIALGLISTPSGSPIRIVKNLRVC 647
>gi|255580465|ref|XP_002531058.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529353|gb|EEF31319.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 341
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 16/83 (19%)
Query: 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCS 532
DLVAW++ ISGF+LNG EAL L+ M ++ +E + FT + L S
Sbjct: 205 DLVAWNT---------------AISGFALNGKPNEALKLYMEMGLEGVEPDGFTLVSLLS 249
Query: 533 ACLAGDDLRKGGELHHKTLRTGL 555
AC L G +H ++ GL
Sbjct: 250 ACAELGALALGRRIHAYMVKVGL 272
>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840 [Vitis vinifera]
Length = 713
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 18/128 (14%)
Query: 439 AARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVIS 498
AA V N ++++ Y ++ + + R D+V+WS+ +I+
Sbjct: 350 AASLSVENSIMTM--YAKCGQLTSSSVIFHEMTRRDIVSWST---------------IIA 392
Query: 499 GFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHH 557
G+S G +EA L MR++ + EF + + SAC L G +LH L GL H
Sbjct: 393 GYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEH 452
Query: 558 TEMKAVAL 565
T M AL
Sbjct: 453 TAMVLSAL 460
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 17/99 (17%)
Query: 474 DLVAWSSLLSVH-------------EEWASRRVV---LVISGFSLNGWYAEALGLFQTMR 517
D V+W+SL+S H +E R +V +I+G++ G YA+ALG+F+ M+
Sbjct: 171 DAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQ 230
Query: 518 VDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGL 555
V IE +E + I + AC L G +H + ++G
Sbjct: 231 VVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGF 269
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 16/113 (14%)
Query: 454 YVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLF 513
Y EI DG++ D+VAWS++ ISG++ EALGLF
Sbjct: 266 YAKCGEIGKARRLFDGMQSRDVVAWSAM---------------ISGYTQADQCREALGLF 310
Query: 514 QTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
M++ +E N+ T + + SAC L G +H R L T + AL
Sbjct: 311 SEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTAL 363
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 16/93 (17%)
Query: 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCS 532
D VAW+S VI+GF+LNG EAL L++ M + +E + FT + L S
Sbjct: 201 DRVAWNS---------------VINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLS 245
Query: 533 ACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
AC+ L G +H ++ GL + + AL
Sbjct: 246 ACVELGALALGERVHMYMVKVGLVQNQHASNAL 278
>gi|255552151|ref|XP_002517120.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543755|gb|EEF45283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 477
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 24/127 (18%)
Query: 451 IGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEAL 510
+G YV +IL L D + D+V WS++ I+G+ G + +AL
Sbjct: 166 MGMYVGCGKILEARLVFDKMSYRDVVTWSTM---------------INGYYQGGHFDDAL 210
Query: 511 GLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGGELHHKTLRTGLH---HTEMKAVALG 566
LF+ MR +E ++ + + SAC +L G E+H + H E G
Sbjct: 211 QLFEEMRSSNVEPDKMVLSTIISACARAKNLGYGKEVHDLIIENNFALDPHLES-----G 265
Query: 567 LISLPDG 573
LISL G
Sbjct: 266 LISLYAG 272
>gi|302765350|ref|XP_002966096.1| hypothetical protein SELMODRAFT_84620 [Selaginella moellendorffii]
gi|300166910|gb|EFJ33516.1| hypothetical protein SELMODRAFT_84620 [Selaginella moellendorffii]
Length = 598
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 17/101 (16%)
Query: 465 LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN 524
L D I++ DL +W+ ++I+ F+ NG A+ +FQ M I+ N
Sbjct: 83 LAFDSIRKKDLFSWN---------------IMIAAFAENGCLDRAVAVFQLMEPARIKRN 127
Query: 525 EFTIDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
T + AG DL +G ++H +GL EM A AL
Sbjct: 128 RGT--FVAVLAAGLDLEQGKKIHDSVHSSGLERNEMVATAL 166
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 549 KTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
K +R LHH E A+ GL+S PDG P+ V+++ R+C
Sbjct: 522 KKVRMLLHHGEKLAIMFGLMSTPDGSPLFVLKNLRVCA 559
>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
Length = 627
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 32/44 (72%), Gaps = 3/44 (6%)
Query: 543 GGELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
G E ++T+R +H+E A+A GLIS+P G P+R++++ R+CG
Sbjct: 548 GSEEKNQTIR---YHSERLAIAFGLISIPLGRPIRIMKNLRVCG 588
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 16/93 (17%)
Query: 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCS 532
D VAW+S VI+GF+LNG EAL L++ M + +E + FT + L S
Sbjct: 201 DRVAWNS---------------VINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLS 245
Query: 533 ACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
AC+ L G +H ++ GL + + AL
Sbjct: 246 ACVELGALALGERVHMYMVKVGLVQNQHASNAL 278
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 17/96 (17%)
Query: 474 DLVAWSSLL-------------SVHEEWASRRVVL---VISGFSLNGWYAEALGLFQTMR 517
D+VAW++++ + ++ + R V +ISG+ NG + +AL LFQ M+
Sbjct: 187 DIVAWNTMIMGVAKCGLVDESRRLFDKMSLRNAVSWNSMISGYVRNGRFFDALELFQKMQ 246
Query: 518 VDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLR 552
V+ IE +EFT + L +AC +R+G +H ++
Sbjct: 247 VERIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVK 282
>gi|218184996|gb|EEC67423.1| hypothetical protein OsI_34621 [Oryza sativa Indica Group]
Length = 799
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 441 RRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGF 500
RRD ++ + Y +I + DG+ PD+V+W++L +SG+
Sbjct: 80 RRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNAL---------------VSGY 124
Query: 501 SLNGWYAEALGLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGGELHHKTLRTGLH 556
G + E++ LF M + + T L +C A ++L G ++H ++TGL
Sbjct: 125 CQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLE 181
>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
Length = 818
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 101/248 (40%), Gaps = 29/248 (11%)
Query: 332 QFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAKRVKKFVEKDAKNW-------S 384
Q + H + F S LDS + + + +G+ + + + +D +W S
Sbjct: 125 QGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHS 184
Query: 385 GPGSYPST-KSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRD 443
G + + F + K +I +V S + PE P + + +A + D
Sbjct: 185 QSGDWSGALRIFKEMKCDVKPNSTTYI-NVISGFSTPEVLPEGRKIHAEIVANGFDT--D 241
Query: 444 VINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLN 503
++ I Y D +K+ D+V+W+ ++I + LN
Sbjct: 242 LVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWN---------------VMIGCYVLN 286
Query: 504 GWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKA 562
G + EAL L+Q + ++ + + T + + AC + L +G +H L GL +E+ A
Sbjct: 287 GDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGL-DSEV-A 344
Query: 563 VALGLISL 570
VA L+++
Sbjct: 345 VATALVNM 352
>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial [Vitis vinifera]
Length = 875
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 16/100 (16%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
+ IK LV W+S+ I GFS NG+ EA+ LF M ++ ++ ++
Sbjct: 461 FEKIKEKSLVTWNSM---------------ICGFSQNGYSVEAITLFDQMYMNCVKMDKL 505
Query: 527 T-IDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
T + + AC L KG +HHK + GL AL
Sbjct: 506 TFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTAL 545
>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
Length = 795
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 91/230 (39%), Gaps = 49/230 (21%)
Query: 358 LVNEYGTSKNLAKRVKKFVEKDAKNWSGPGSYPSTKSFHTNRLQAKRQLRRFISDVDSSY 417
L+N YG L + FV+ D K+ S+ S + QAK ++ +
Sbjct: 260 LINLYGKCGALEEAFGVFVQIDNKDIV---SWSSMIAAFAQSGQAKSAIQLLM------L 310
Query: 418 LPPEGCPNYKPPDDKFIARLWAAR--------RDVINGVVSIG--EYVCVAEILVMLL-- 465
+ EG +P + F+ L A +++ +V G + VC+ LV +
Sbjct: 311 MDLEG---VRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCN 367
Query: 466 ---------FLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTM 516
+ + D+V+WSS+ I+G+S N A AL LF+ M
Sbjct: 368 WGWVETARSIFESSRERDVVSWSSM---------------IAGYSQNESPARALSLFREM 412
Query: 517 RVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
VD ++ N T + AC LR+G +LH + GL A AL
Sbjct: 413 EVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERVRCLGLDKDVPVATAL 462
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
+H+EM A+ LG+IS P G P+R+ ++ RMC
Sbjct: 726 YHSEMLALGLGIISTPAGTPLRITKNLRMC 755
>gi|15239977|ref|NP_201451.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171135|sp|Q9FJY9.1|PP448_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g66500, mitochondrial; Flags: Precursor
gi|10177531|dbj|BAB10926.1| unnamed protein product [Arabidopsis thaliana]
gi|332010838|gb|AED98221.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 532
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 16/88 (18%)
Query: 468 DGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT 527
+ ++ DLV+W++LLS GF NG EALG+F M + +E +EFT
Sbjct: 143 ESVEEKDLVSWNALLS---------------GFLRNGKGKEALGVFAAMYRERVEISEFT 187
Query: 528 I-DLCSACLAGDDLRKGGELHHKTLRTG 554
+ + C + L++G ++H + TG
Sbjct: 188 LSSVVKTCASLKILQQGKQVHAMVVVTG 215
>gi|190612965|gb|ACE80860.1| pentatricopeptide repeat protein [Metzgeria furcata]
Length = 152
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLIS P G P+R++++ R+CG
Sbjct: 90 HHSEKLAIAFGLISTPAGTPIRIVKNLRVCG 120
>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g52630-like [Cucumis sativus]
Length = 598
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 544 GELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
GE ++T+R +H+E A+A GLI+ P G P+RV+++ R+CG
Sbjct: 520 GEEKNETIR---YHSERLAIAFGLITFPPGRPIRVMKNLRVCG 559
>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At5g52630-like [Cucumis
sativus]
Length = 598
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Query: 544 GELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
GE ++T+R +H+E A+A GLI+ P G P+RV+++ R+CG
Sbjct: 520 GEEKNETIR---YHSERLAIAFGLITFPPGRPIRVMKNLRVCG 559
>gi|297744641|emb|CBI37903.3| unnamed protein product [Vitis vinifera]
Length = 516
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 466 FLDGIKRPDLVAWSSLLSVHEEWASRRV----------------VLVISGFSLNGWYAEA 509
D + D++AW++++S + +W + +ISG++ NG +A
Sbjct: 249 LFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKA 308
Query: 510 LGLFQTMRVDYIEANEFTIDLC-SACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
L LF M + ++ ++FT C AC + L+ G ++H LR + AL
Sbjct: 309 LELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSAL 365
>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
Length = 865
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 31/43 (72%)
Query: 544 GELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
G + ++ R+ +HH+E AVA G++SLP MP+ ++++ R+CG
Sbjct: 784 GYVRTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICG 826
>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
Length = 855
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 31/43 (72%)
Query: 544 GELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
G + ++ R+ +HH+E AVA G++SLP MP+ ++++ R+CG
Sbjct: 774 GYVRTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICG 816
>gi|78499702|gb|ABB45856.1| hypothetical protein [Eutrema halophilum]
Length = 527
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 20/90 (22%)
Query: 468 DGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT 527
+ ++ D+V+W+SLLS GF NG EALG+F M + IE +EFT
Sbjct: 138 ESVEDKDVVSWNSLLS---------------GFLRNGKGKEALGVFAAMYRETIEISEFT 182
Query: 528 IDLCS---ACLAGDDLRKGGELHHKTLRTG 554
LCS C + L++G ++H + TG
Sbjct: 183 --LCSVVKTCASLKILQQGKQVHAMVVVTG 210
>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
Length = 865
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 31/43 (72%)
Query: 544 GELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
G + ++ R+ +HH+E AVA G++SLP MP+ ++++ R+CG
Sbjct: 784 GYVRTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICG 826
>gi|312190416|gb|ADQ43215.1| unknown [Eutrema parvulum]
Length = 527
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 20/119 (16%)
Query: 439 AARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVIS 498
A I+ I Y +++ + + ++ D+V+W++LLS
Sbjct: 109 GAETGTISKTALIDMYSKYGQLVDSVTVFESVEDKDVVSWNALLS--------------- 153
Query: 499 GFSLNGWYAEALGLFQTMRVDYIEANEFTIDLCS---ACLAGDDLRKGGELHHKTLRTG 554
GF NG EALGLF M + +E +EFT LCS C + L++G ++H + TG
Sbjct: 154 GFLRNGKGKEALGLFAAMYREKVEISEFT--LCSVVKTCASLKILQQGKQVHAMVVVTG 210
>gi|358357220|gb|AEU08450.1| pentatricopeptide repeat protein [Takakia lepidozioides]
Length = 150
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLIS P GMPVR+I++ +CG
Sbjct: 88 HHSEKLAIAFGLISTPPGMPVRIIKNLGVCG 118
>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 743
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GL+ +PDG+ +RV+++ R+CG
Sbjct: 674 HHSEKLAIAFGLLFIPDGLQIRVVKNLRVCG 704
>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 975
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 454 YVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLF 513
YV +IL+ LF D ++ +LV W+++ I+GFS N + +AL +F
Sbjct: 547 YVQCGKILLAKLFFDNMEEKNLVCWNTM---------------INGFSQNEFPFDALDMF 591
Query: 514 QTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALGLISL 570
M I +E + I AC LR G ELH +++ H TE V LI +
Sbjct: 592 HQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKS--HLTEHSFVTCSLIDM 647
Score = 38.5 bits (88), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554
+I G NG+ +AL L+ MR +E + FTI L SAC L G E+H LR G
Sbjct: 473 LIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNG 532
Query: 555 LHHTEMKAVALGLISL 570
E + + L+SL
Sbjct: 533 FELDEF--ICISLVSL 546
>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 905
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 441 RRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGF 500
RRD ++ + Y +I + DG+ PD+V+W++L +SG+
Sbjct: 122 RRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNAL---------------VSGY 166
Query: 501 SLNGWYAEALGLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGGELHHKTLRTGL 555
G + E++ LF M + + T L +C A ++L G ++H ++TGL
Sbjct: 167 CQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGL 222
>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
[Vitis vinifera]
Length = 612
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 466 FLDGIKRPDLVAWSSLLSVHEEWASRRV----------------VLVISGFSLNGWYAEA 509
D + D++AW++++S + +W + +ISG++ NG +A
Sbjct: 249 LFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKA 308
Query: 510 LGLFQTMRVDYIEANEFTIDLC-SACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
L LF M + ++ ++FT C AC + L+ G ++H LR + AL
Sbjct: 309 LELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSAL 365
>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
Length = 1072
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 16/100 (16%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
+ IK LV W+S+ I GFS NG+ EA+ LF M ++ ++ ++
Sbjct: 658 FEKIKEKSLVTWNSM---------------ICGFSQNGYSVEAITLFDQMYMNCVKMDKL 702
Query: 527 T-IDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
T + + AC L KG +HHK + GL AL
Sbjct: 703 TFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTAL 742
>gi|224140235|ref|XP_002323489.1| predicted protein [Populus trichocarpa]
gi|222868119|gb|EEF05250.1| predicted protein [Populus trichocarpa]
Length = 915
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 33/150 (22%)
Query: 444 VINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLN 503
VI + +G V E+ + G+ PD+V++S+L IS FS
Sbjct: 143 VIAAYIKLGLVVDAYEVFM------GMSTPDVVSYSAL---------------ISSFSKL 181
Query: 504 GWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKA 562
EA+ LF MR+ IE NE++ + + +AC+ +L G ++H ++ G A
Sbjct: 182 NRETEAIQLFFRMRISGIEPNEYSFVAILTACIRSLELEMGLQVHALAIKLGYSQLVFVA 241
Query: 563 VAL-GL----------ISLPDGMPVRVIRS 581
AL GL I L D MP R I S
Sbjct: 242 NALIGLYGKCGCLDHAIHLFDEMPQRDIAS 271
>gi|190612899|gb|ACE80827.1| pentatricopeptide repeat protein [Haplomitrium mnioides]
Length = 152
Score = 43.5 bits (101), Expect = 0.32, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLIS P G P+RV ++ R+CG
Sbjct: 90 HHSEKLAIAYGLISTPPGTPLRVFKNLRVCG 120
>gi|190612663|gb|ACE80709.1| pentatricopeptide repeat protein [Haplomitrium mnioides]
Length = 152
Score = 43.5 bits (101), Expect = 0.32, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLIS P G P+RV ++ R+CG
Sbjct: 90 HHSEKLAIAYGLISTPPGTPLRVFKNLRVCG 120
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 16/103 (15%)
Query: 454 YVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLF 513
Y ++ D + DLVAW+S VI+GF+ NG EAL L+
Sbjct: 166 YANCGDVASAYKVFDKMPEKDLVAWNS---------------VINGFAENGKPEEALALY 210
Query: 514 QTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
M I+ + FTI L SAC L G +H ++ GL
Sbjct: 211 TEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGL 253
>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Cucumis sativus]
Length = 849
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 76/176 (43%), Gaps = 16/176 (9%)
Query: 388 SYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVING 447
S+ + S N R L F+ +++ Y P E C + + + D I G
Sbjct: 135 SWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYC--FAAATRACSTAEFVSVGDSIFG 192
Query: 448 VVSIGEY----VCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVV---LVISGF 500
V Y VCV L+ + F+ G R DLV S V E+ R V L+I+
Sbjct: 193 FVVKTGYLQSDVCVGCGLIDM-FVKG--RGDLV---SAFKVFEKMPERNAVTWTLMITRL 246
Query: 501 SLNGWYAEALGLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGGELHHKTLRTGL 555
G+ EA+ LF M + E + FT+ + SAC + L G +LH + +R GL
Sbjct: 247 MQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGL 302
>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
Length = 863
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 441 RRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGF 500
RRD ++ + Y +I + DG+ PD+V+W++L +SG+
Sbjct: 80 RRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNAL---------------VSGY 124
Query: 501 SLNGWYAEALGLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGGELHHKTLRTGLH 556
G + E++ LF M + + T L +C A ++L G ++H ++TGL
Sbjct: 125 CQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLE 181
>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
Length = 863
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 441 RRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGF 500
RRD ++ + Y +I + DG+ PD+V+W++L +SG+
Sbjct: 80 RRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNAL---------------VSGY 124
Query: 501 SLNGWYAEALGLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGGELHHKTLRTGLH 556
G + E++ LF M + + T L +C A ++L G ++H ++TGL
Sbjct: 125 CQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLE 181
>gi|190612947|gb|ACE80851.1| pentatricopeptide repeat protein [Lepidogyna hodgsoniae]
Length = 152
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+ALGLIS P G P+R+ ++ R+CG
Sbjct: 90 HHSEKLAIALGLISTPPGTPLRIFKNLRVCG 120
>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLS-------------VHEEW 488
R+V+ V + Y AE+ +G+ + + AWSS++S + +
Sbjct: 93 RNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRI 152
Query: 489 ASRRVV---LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGG 544
R +V +ISG++ NG+ EAL F M+ + E +E TI + SAC L G
Sbjct: 153 PVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGK 212
Query: 545 ELHHKTLRTGL 555
++HH G+
Sbjct: 213 KIHHMMNHKGI 223
>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Glycine max]
Length = 755
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 16/92 (17%)
Query: 465 LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN 524
+ D + R DLV+W+++ ++G++ NG+ EAL LF MR D +
Sbjct: 417 IVFDMMNRRDLVSWNAM---------------VTGYAQNGYVCEALFLFNEMRSDNQTPD 461
Query: 525 EFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
TI L C + L G +H +R GL
Sbjct: 462 SITIVSLLQGCASTGQLHLGKWIHSFVIRNGL 493
>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRT 553
++ISG+ G EALGLF MR Y+E++ T + +AC L KG E+H+ +
Sbjct: 379 VMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEK 438
Query: 554 GLHHTEMKAVAL 565
L + E+ AL
Sbjct: 439 KLDNNEVVMGAL 450
>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 933
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 16/91 (17%)
Query: 466 FLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANE 525
+D PDLV+WS+L ISG++ NG AL F M + ++ NE
Sbjct: 113 LVDESSEPDLVSWSAL---------------ISGYAQNGLGGGALMAFHEMHLLGVKCNE 157
Query: 526 FTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
FT + AC DLR G ++H + +G
Sbjct: 158 FTFSSVLKACSIVKDLRIGKQVHGVVVVSGF 188
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
HH+E AVA GLI+ P G P+RV ++ R+C
Sbjct: 864 HHSEKLAVAFGLIATPQGAPIRVKKNLRVC 893
>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 707
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 26/31 (83%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E AVA GL+ +P+GMP+RV+++ R+CG
Sbjct: 638 YHSERLAVAYGLLKVPEGMPIRVMKNLRVCG 668
>gi|326522570|dbj|BAK07747.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 16/120 (13%)
Query: 447 GVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWY 506
G +G Y E+ D I D VAW++L I+G++ NG
Sbjct: 271 GSALVGMYEKCGEMAEARRVFDAIAHKDNVAWNAL---------------ITGYAQNGMS 315
Query: 507 AEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
EA+ LF +MR ++ T + + SAC A L G EL L+ G + AL
Sbjct: 316 KEAISLFHSMRQAGARPDKITLVGVLSACAAVGALELGTELDRYALQRGFYSNVYVGTAL 375
>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
lyrata]
gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
lyrata]
Length = 1038
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 17/90 (18%)
Query: 472 RPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDL 530
R D+VAW++L I G++ N +AL FQT+RV+ + AN T + +
Sbjct: 526 RRDVVAWNAL---------------IGGYAENEDPDKALAAFQTLRVEGVSANYITVVSV 570
Query: 531 CSACLA-GDDLRKGGELHHKTLRTGLHHTE 559
SACL GD L +G LH + G E
Sbjct: 571 LSACLVPGDLLERGKPLHAYIVSAGFESDE 600
>gi|302781981|ref|XP_002972764.1| hypothetical protein SELMODRAFT_173093 [Selaginella moellendorffii]
gi|300159365|gb|EFJ25985.1| hypothetical protein SELMODRAFT_173093 [Selaginella moellendorffii]
Length = 535
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 30/217 (13%)
Query: 348 LPNFKGMPICLVNEYGTSKNL---AKRVKKFVEKDAKNWSGPGSYPSTKSFHTNRLQAKR 404
L + + I L N YG ++ A + + + D WS + + + ++ L R
Sbjct: 146 LTRDRSVAISLANMYGKCGDVDTAASMLDEMFQPDVIAWSAVITGFAQQGRSSDALHLFR 205
Query: 405 QLRR--FISDVDSSYLPPEGCPNYKP-PDDKFIARLWAARR---DVINGVVSIGEYVCVA 458
+++ I++ + C N D KF+ L A ++ DVI G + Y
Sbjct: 206 RMQHEGVIANKITLVATLSACTNSSALADGKFLHSLIAEKKLESDVIVGGALVTMYTNCG 265
Query: 459 EILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRV 518
+ L ++RP+++AW++++S + G EAL +F+ +
Sbjct: 266 SLDDARLAFGAVRRPNVIAWTAMISACVHF---------------GELDEALQIFRLIEA 310
Query: 519 DYIEANEFTID------LCSACLAGDDLRKGGELHHK 549
++ E +D L +AC DL +G LH +
Sbjct: 311 QCLDDRELLLDGIVFVPLINACARLTDLSQGRRLHAR 347
>gi|218201925|gb|EEC84352.1| hypothetical protein OsI_30875 [Oryza sativa Indica Group]
Length = 393
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 61/136 (44%), Gaps = 30/136 (22%)
Query: 479 SSLLSVHEEWASRRVVL-VISGFSL------NGWYAEALGLFQTMRVDYIEANEFTIDLC 531
S L + E+ R V L V+S S+ NG EA+ LF+ M+ + IE N TI
Sbjct: 206 SEALRLFREFVGRGVELNVVSWTSIVACCVQNGKDLEAVDLFREMQSEGIEPNSVTIP-- 263
Query: 532 SACLAGDDLRKGGELHHKTLRTG--------LH-------------HTEMKAVALGLISL 570
S + K L + R G LH H+E AVALGLIS
Sbjct: 264 SHPMMATITEKLKHLTVEMRRLGFAPSTDYVLHDVEEQDKDDILSVHSEKLAVALGLIST 323
Query: 571 PDGMPVRVIRSARMCG 586
G P+RVI++ R+CG
Sbjct: 324 SRGTPLRVIKNLRICG 339
>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 742
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 17/115 (14%)
Query: 468 DGIKRPDLVAWSSLLS-------VHEEWA------SRRVVL---VISGFSLNGWYAEALG 511
D I D VAW++++S + + W +R V+ +ISG+S G AEA+
Sbjct: 164 DDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVD 223
Query: 512 LFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
F +M D IE +E T I L SAC DL G LH G+ + VAL
Sbjct: 224 CFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVAL 278
>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
Length = 906
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 16/91 (17%)
Query: 466 FLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANE 525
+D PDLV+WS+L ISG++ NG AL F M + ++ NE
Sbjct: 113 LVDESSEPDLVSWSAL---------------ISGYAQNGLGGGALMAFHEMHLLGVKCNE 157
Query: 526 FTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
FT + AC DLR G ++H + +G
Sbjct: 158 FTFSSVLKACSIVKDLRIGKQVHGVVVVSGF 188
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
HH+E AVA GLI+ P G P+RV ++ R+C
Sbjct: 837 HHSEKLAVAFGLIATPQGAPIRVKKNLRVC 866
>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Brachypodium distachyon]
Length = 706
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 26/31 (83%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E +AVA GL+ +P GMP+RV+++ R+CG
Sbjct: 637 YHSERQAVAYGLLKVPAGMPIRVMKNLRVCG 667
>gi|357126224|ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Brachypodium distachyon]
Length = 515
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E AVA GL++LP G PVRV ++ R+CG
Sbjct: 446 HHSERLAVAFGLLALPAGAPVRVFKNLRVCG 476
>gi|115460142|ref|NP_001053671.1| Os04g0584700 [Oryza sativa Japonica Group]
gi|113565242|dbj|BAF15585.1| Os04g0584700, partial [Oryza sativa Japonica Group]
Length = 273
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 31/43 (72%)
Query: 544 GELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
G + ++ R+ +HH+E AVA G++SLP MP+ ++++ R+CG
Sbjct: 192 GYVRTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICG 234
>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Glycine max]
Length = 711
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 26/31 (83%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E AVA GL+ +P+GMP+RV+++ R+CG
Sbjct: 642 YHSEKLAVAYGLLKVPEGMPIRVMKNLRVCG 672
>gi|302765581|ref|XP_002966211.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
gi|300165631|gb|EFJ32238.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
Length = 969
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 16/83 (19%)
Query: 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCS 532
DL W+S+++ +E+ +G Y +AL L++ M +EA+ T I + +
Sbjct: 689 DLFLWTSMITAYEQ---------------HGEYRKALELYEQMHSRQVEADRVTFISVLN 733
Query: 533 ACLAGDDLRKGGELHHKTLRTGL 555
AC DLR+G +H + +R GL
Sbjct: 734 ACAHLSDLRQGQAIHARVMRRGL 756
>gi|190612851|gb|ACE80803.1| pentatricopeptide repeat protein [Cycas revoluta]
Length = 152
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E A+A GLIS P G P+RVI++ R+CG
Sbjct: 89 FYHSEKLAIAFGLISTPAGTPIRVIKNLRVCG 120
>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 16/100 (16%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
DG++ ++V W+++++ S F NG + EAL LF M + +++NEF
Sbjct: 292 FDGLQSRNVVLWTAVMA--------------SCFQ-NGCFEEALNLFSKMEQENVKSNEF 336
Query: 527 TID-LCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
T L +AC R G LH + ++G H M AL
Sbjct: 337 TYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNAL 376
>gi|302801049|ref|XP_002982281.1| hypothetical protein SELMODRAFT_116350 [Selaginella moellendorffii]
gi|300149873|gb|EFJ16526.1| hypothetical protein SELMODRAFT_116350 [Selaginella moellendorffii]
Length = 515
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 16/83 (19%)
Query: 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCS 532
DL W+S+++ +E+ +G Y +AL L++ M +EA+ T I + +
Sbjct: 244 DLFLWTSMITAYEQ---------------HGEYRKALELYEQMHSRQVEADRVTFISVLN 288
Query: 533 ACLAGDDLRKGGELHHKTLRTGL 555
AC DLR+G +H + +R GL
Sbjct: 289 ACAHLSDLRQGQAIHARVMRRGL 311
>gi|413918391|gb|AFW58323.1| hypothetical protein ZEAMMB73_367038 [Zea mays]
Length = 711
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 439 AARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVIS 498
A ++DV+ + I + DG+++ +LV+W+++L+ + +
Sbjct: 311 APKKDVVMSTSVVSGLAACGRIADAKMVFDGMEQHNLVSWNAMLTGY-----------VK 359
Query: 499 GFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
L G AL LFQ MR + E + T+ + +AC DL KG ELH L+ GL
Sbjct: 360 SMDLTG----ALDLFQQMRHETKELDVVTLASVLNACTGLLDLGKGEELHALALKCGL 413
>gi|297828580|ref|XP_002882172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328012|gb|EFH58431.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 638
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 20/99 (20%)
Query: 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTIDLC-- 531
D+++WS+ VI+ + NG AEAL +F M D E N T+ LC
Sbjct: 209 DVISWST---------------VIACYVQNGAAAEALRVFNEMIDDGTEPNVATV-LCVL 252
Query: 532 SACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALGLISL 570
AC A +DL +G + H +R GL TE+K V+ L+ +
Sbjct: 253 QACAAANDLEQGRKTHELAIRKGL-ETEVK-VSTALVDM 289
>gi|255594521|ref|XP_002536106.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223520840|gb|EEF26277.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 17/117 (14%)
Query: 454 YVCVAEILVMLLFLDGIKRPDLVAWSSLLSVH-------------EEWASRRVVL---VI 497
Y + ++ + D ++ + +W+ ++S+H E+ + R VV +I
Sbjct: 117 YAKAGDSVMAKIVFDRMRLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVTWNSMI 176
Query: 498 SGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRT 553
+G+S +G+ EAL LF M D ++ + FT+ + SAC ++L G ++H +RT
Sbjct: 177 TGYSQHGFDKEALELFSRMLEDSLKPDRFTLASILSACANIENLNLGKQIHSYIIRT 233
>gi|255564751|ref|XP_002523370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537458|gb|EEF39086.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 695
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 22/119 (18%)
Query: 468 DGIKRPDLVAWSSLLSVHEEWASRRVVL--------------------VISGFSLNGWYA 507
+GI R D+V W+ L+S + W L +ISG S NG Y
Sbjct: 497 EGI-RADIVTWNGLVSGYSIWGHNEEALAVINEIKSSGLTPNVVSWTALISGCSQNGNYK 555
Query: 508 EALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
E+L F M+ + I+ N T+ L C L+KG E+H ++++G A AL
Sbjct: 556 ESLEFFIQMQQEGIKPNSTTVSSLLKTCGGLSLLKKGKEIHCLSVKSGFTGDIYIATAL 614
>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 614
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Query: 447 GVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWY 506
G I Y E+ DG+ D++ W++ VISG++ NG
Sbjct: 262 GSALISMYAKCGELESARRIFDGMAARDVITWNA---------------VISGYAQNGMA 306
Query: 507 AEALGLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
EA+ LF M+ D + AN+ T+ + SAC L G ++ + G H A AL
Sbjct: 307 DEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATAL 366
>gi|190612837|gb|ACE80796.1| pentatricopeptide repeat protein [Isoetes engelmannii]
Length = 152
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLIS P G +RVI++ R+CG
Sbjct: 90 HHSEKLAIAFGLISTPQGATIRVIKNLRICG 120
>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 882
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 33/130 (25%)
Query: 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTIDLCSA 533
DLV+W+SL ISG+S +G+Y EAL ++ +R +I + FT+
Sbjct: 171 DLVSWNSL---------------ISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLP 215
Query: 534 CLAGDDLRKGGE-LHHKTLRTGLHHTEMKAVALGLISLP-------------DGMPVR-- 577
A + K G+ LH TL++G++ + V GL+++ D M VR
Sbjct: 216 AFANLLVVKQGQGLHGFTLKSGVN--SVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDS 273
Query: 578 VIRSARMCGY 587
V + +CGY
Sbjct: 274 VTYNTMICGY 283
>gi|255570240|ref|XP_002526080.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534577|gb|EEF36274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 502
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 25/127 (19%)
Query: 430 DDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWA 489
+DK + AAR +I+ G +AE L DG+ D+++W+S+
Sbjct: 185 EDKDLGNKIAARNALIDMYAKCGS---MAE---ARLVFDGMDERDVISWTSM-------- 230
Query: 490 SRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHH 548
I+G+ LNG AL LF+TM+++ I + TI + SAC+ +L+ G H
Sbjct: 231 -------INGYILNGDEKSALTLFRTMQMERIIPSSVTIASVLSACI---NLKDGRCFHG 280
Query: 549 KTLRTGL 555
T+R L
Sbjct: 281 WTMRQNL 287
>gi|302761976|ref|XP_002964410.1| hypothetical protein SELMODRAFT_82255 [Selaginella moellendorffii]
gi|300168139|gb|EFJ34743.1| hypothetical protein SELMODRAFT_82255 [Selaginella moellendorffii]
Length = 432
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 471 KRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-ID 529
+ D+V+WSS+ I+G+S N A AL LF+ M VD ++ N T +
Sbjct: 19 RERDVVSWSSM---------------IAGYSQNESPARALSLFREMEVDGVQPNSVTFVS 63
Query: 530 LCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
AC LR+G +LH + GL A AL
Sbjct: 64 AIDACAGVGALRRGTQLHERVRCLGLDKDVPVATAL 99
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
+H+EM A+ LG++S P G P+R+ ++ RMC
Sbjct: 363 YHSEMLALGLGIVSTPAGTPLRITKNLRMC 392
>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
Length = 496
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 468 DGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT 527
DG+ PD V+W++L I GF NG + EA+ F+ M +D +E + T
Sbjct: 162 DGMPGPDKVSWTAL---------------IDGFVKNGRHDEAIDCFRAMLLDSVEPDYVT 206
Query: 528 -IDLCSACLAGDDLRKGGELHHKTLRTGL 555
I + SAC L G +H LR GL
Sbjct: 207 LIAVVSACAEVGALGLGMWVHRLVLRQGL 235
>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 25/30 (83%)
Query: 557 HTEMKAVALGLISLPDGMPVRVIRSARMCG 586
H+E AVA GL+ +P+GMP+RV+++ R+CG
Sbjct: 502 HSEKLAVAYGLLKVPEGMPIRVMKNLRVCG 531
>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Vitis vinifera]
Length = 755
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFS 501
RDV G Y + + I RPDLVAW++ +I+GF+
Sbjct: 299 RDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNA---------------IIAGFA 343
Query: 502 LNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
G EA+ F MR + +E T+ L AC + +L +G ++H + GL
Sbjct: 344 YGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGL 398
>gi|302788234|ref|XP_002975886.1| hypothetical protein SELMODRAFT_104103 [Selaginella moellendorffii]
gi|300156162|gb|EFJ22791.1| hypothetical protein SELMODRAFT_104103 [Selaginella moellendorffii]
Length = 679
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFT----IDLCSACLAGDDLRKGGELHHKTL 551
+I+ +SLNG +AL L++ M ++ +E +E+T +D CS +AGD L +G LH +
Sbjct: 277 MIAAYSLNGDGRQALSLYKKMDLEGLEPDEYTFTSLLDACS--IAGDTLTEGRALHRRLE 334
Query: 552 RTGLHHTEMKAVAL 565
GL + A AL
Sbjct: 335 AKGLEKKMVLATAL 348
>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
Length = 1133
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 468 DGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT 527
+GIK PDLV W+ + ISG+++ G EAL F M+ + + N +
Sbjct: 720 EGIK-PDLVTWNGM---------------ISGYAMWGCGKEALAFFAQMQQEGVMPNSAS 763
Query: 528 ID-LCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
I L AC + L+KG E+H ++R G A AL
Sbjct: 764 ITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATAL 802
>gi|241896590|ref|ZP_04783886.1| crossover junction endodeoxyribonuclease [Weissella
paramesenteroides ATCC 33313]
gi|241870182|gb|EER73933.1| crossover junction endodeoxyribonuclease [Weissella
paramesenteroides ATCC 33313]
Length = 144
Score = 42.7 bits (99), Expect = 0.53, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 24/131 (18%)
Query: 267 IVALDVGKKYTGVAV-----W-HQGMEDI---EAESTFFMEDMEEQMLNIKEKFEPVGFV 317
I+ LDVG + GVAV W QG+E I E E F ++ M+E + K+EP+GFV
Sbjct: 4 ILGLDVGSRTVGVAVSDQLGWTAQGVEIIPINEDEKEFGIDRMKE----LVAKYEPIGFV 59
Query: 318 VGFPVGSPEKDTPKQFSQAHVKAFLSKLDSLP-NFKGMPIC-------LVNEYGTSKNLA 369
+G P P+ + L + LP +F+ + L+ E TS+
Sbjct: 60 LGLPKNMNNTSGPRVDASRAYGELLKETFGLPIDFQDERLTTVEAERMLIEEADTSR--- 116
Query: 370 KRVKKFVEKDA 380
K+ KK ++K A
Sbjct: 117 KKRKKVIDKLA 127
>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
Length = 578
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E AVA GLIS +G P++VI++ R+CG
Sbjct: 509 HHSEKLAVAFGLISTSEGTPIQVIKNLRICG 539
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 16/106 (15%)
Query: 443 DVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSL 502
D + G + Y V EI D + + D+ +W++L ISGF+
Sbjct: 139 DALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNAL---------------ISGFAQ 183
Query: 503 NGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELH 547
EAL LF+ M +D + NE ++ SAC D ++G ++H
Sbjct: 184 GSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIH 229
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 59/113 (52%), Gaps = 17/113 (15%)
Query: 470 IKRPDLVAWSSLLSVH-------------EEWASRRVV---LVISGFSLNGWYAEALGLF 513
++ ++VAW+SLL+++ E ++R VV L+I+G++ +G A+ L
Sbjct: 447 MENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELL 506
Query: 514 QTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
+M+V+ + + T I + AC A L +G +H + ++ GL + A +L
Sbjct: 507 SSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSL 559
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 552 RTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
R HH+E A+A GL+ P G P+R++++ R+CG
Sbjct: 817 RALCHHSEKLAIAYGLLKTPPGTPIRIMKNLRVCG 851
>gi|147784524|emb|CAN61725.1| hypothetical protein VITISV_032420 [Vitis vinifera]
Length = 763
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 56/142 (39%), Gaps = 21/142 (14%)
Query: 415 SSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPD 474
SS L PE KF RDV G Y + + I RPD
Sbjct: 277 SSLLQPEYGRQLHGMSIKF-----GLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPD 331
Query: 475 LVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSA 533
LVAW++ +I+GF+ G EA+ F MR + +E T+ L A
Sbjct: 332 LVAWNA---------------IIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCA 376
Query: 534 CLAGDDLRKGGELHHKTLRTGL 555
C + +L +G ++H + GL
Sbjct: 377 CTSPSELYQGMQVHGYINKMGL 398
>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
Length = 797
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 16/113 (14%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFS 501
RD ++ I YV ++ FL+G + VAW+++ ISG++
Sbjct: 221 RDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAM---------------ISGYA 265
Query: 502 LNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRT 553
G Y EA +F+ M + I+ +EFT + S C R G E+H L+T
Sbjct: 266 HRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKT 318
>gi|358357214|gb|AEU08447.1| pentatricopeptide repeat protein [Takakia lepidozioides]
Length = 150
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+EM A+A GLIS G P+RVI++ R+CG
Sbjct: 88 HHSEMLAIAFGLISTAPGKPLRVIKNLRVCG 118
>gi|297800206|ref|XP_002867987.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297313823|gb|EFH44246.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 616
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 82/215 (38%), Gaps = 37/215 (17%)
Query: 358 LVNEYGTSKNLAKRVKKF---VEKDAKNWSGPGSYPSTKSFHTNRLQAKRQLRRFISDVD 414
LV Y L ++ F EKD +W+ S S K H N+ + FI ++
Sbjct: 224 LVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACSRKG-HGNK-----AIFMFIGMLN 277
Query: 415 SSYLPPE--GCPNYKPPDDKFIARLW----------AARRDVINGVVSIGEYVCVAEILV 462
+LP E C K ++ R + DV G + Y EI
Sbjct: 278 HGFLPNEFTVCSILKACSEEKAIRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISD 337
Query: 463 MLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIE 522
DG+ + V W+S+++ H G+ EA+ LF+ M+ ++
Sbjct: 338 CRKVFDGMSNRNTVTWTSIIAAHAR---------------EGFGEEAISLFRVMKRRHLI 382
Query: 523 ANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLH 556
AN T + + AC + L G ELH + ++ +
Sbjct: 383 ANNLTVVSILRACGSVGALLLGKELHAQIIKNSIE 417
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 23/117 (19%)
Query: 457 VAEILVMLLFLDGIKR-------PDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEA 509
V +LV LDG ++ DLV+W+S+ I+G+ GW EA
Sbjct: 148 VIHLLVSCGDLDGARKMFDKSCVRDLVSWNSM---------------INGYVRRGWAYEA 192
Query: 510 LGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
L ++ M+V+ I+ +E T I + S+C +DL G E H GL T A AL
Sbjct: 193 LNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANAL 249
>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
Length = 1027
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 16/114 (14%)
Query: 460 ILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVL------VISGFSLNGWYAE----- 508
++V LF + I LV S + E SRRV+L V++ +L G YAE
Sbjct: 478 VVVSGLFYNQIIGNALV--SMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPD 535
Query: 509 -ALGLFQTMRVDYIEANEFT-IDLCSACLA-GDDLRKGGELHHKTLRTGLHHTE 559
AL FQTMRV+ + +N T + + SACL GD L +G LH + G E
Sbjct: 536 KALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDE 589
>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 16/90 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
D + PDLV W+S +I+G+ NG EAL ++ M++ I NE
Sbjct: 372 FDFLLEPDLVLWTS---------------IIAGYVQNGKNEEALSMYGRMQMRKILPNEL 416
Query: 527 TI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
T+ + AC L +G ++H +T++ GL
Sbjct: 417 TMASVLKACSNLAALEQGKQIHARTIKYGL 446
>gi|359491917|ref|XP_003634341.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 767
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 16/124 (12%)
Query: 443 DVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSL 502
DV G I Y + DG+ + V+W+SL I G +
Sbjct: 293 DVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSL---------------IGGVAQ 337
Query: 503 NGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMK 561
G+ EAL LF MR + +++FT+ + CL+ D+ G +LH T+ GL +
Sbjct: 338 AGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPV 397
Query: 562 AVAL 565
A AL
Sbjct: 398 ANAL 401
>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
Length = 928
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 16/114 (14%)
Query: 460 ILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVL------VISGFSLNGWYAE----- 508
++V LF + I LV+ + E SRRV+L V++ +L G YAE
Sbjct: 371 VVVSGLFYNQIIGNALVSMYG--KIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPD 428
Query: 509 -ALGLFQTMRVDYIEANEFT-IDLCSACLA-GDDLRKGGELHHKTLRTGLHHTE 559
AL FQTMRV+ + +N T + + SACL GD L +G LH + G E
Sbjct: 429 KALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDE 482
>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
Length = 766
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 470 IKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI- 528
I+ PDLV+W+SL I+ FS G +EA+ LF MR + + T+
Sbjct: 312 IESPDLVSWNSL---------------INAFSAKGLLSEAMVLFSEMRDSGLRPDGITVM 356
Query: 529 DLCSACLAGDDLRKGGELHHKTLRTGL 555
L AC+ D L +G +H ++ GL
Sbjct: 357 ALLCACVGYDALHQGRSIHSYLVKLGL 383
>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 443 DVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSL 502
DVI + YV + +I + +K PD+VAW+++ I G+
Sbjct: 307 DVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAM---------------IVGYVQ 351
Query: 503 NGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554
NG +A+ +F+TM + N FT+ + SA + L G ++H +R+G
Sbjct: 352 NGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSG 404
>gi|224126355|ref|XP_002329533.1| predicted protein [Populus trichocarpa]
gi|222870242|gb|EEF07373.1| predicted protein [Populus trichocarpa]
Length = 693
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFS 501
R+VI I Y + ++ F I ++V+W+++ ISGF+
Sbjct: 186 RNVITWTTMIAGYCRIGDVREAYCFFCRIPERNVVSWTAM---------------ISGFT 230
Query: 502 LNGWYAEALGLFQTM--RVDYIEANEFTIDLCSACLAGDDLRKGGELHHKTLRTGLHHTE 559
NG+Y EAL LF M R + E I L AC G +LH + + GL + +
Sbjct: 231 WNGYYGEALLLFLEMKRRSNIAPNGETFISLAYACAGMRFHHLGKQLHAQLIINGLEYED 290
>gi|302775039|ref|XP_002970936.1| hypothetical protein SELMODRAFT_94326 [Selaginella moellendorffii]
gi|300161647|gb|EFJ28262.1| hypothetical protein SELMODRAFT_94326 [Selaginella moellendorffii]
Length = 632
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
DGIKR + +W+ +++S ++ NG + ALGLF M ++ I + F
Sbjct: 15 FDGIKRWNEYSWT---------------MILSAYAHNGHFHAALGLFWRMLLEGIRVDSF 59
Query: 527 TIDLC-SACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
T+ + + C DL G + + +GLH + A AL
Sbjct: 60 TLSIAITVCSDLGDLSSGQSVRAVAVESGLHSDLVVATAL 99
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
HH+EM AV LGLIS P G ++V++ +R C
Sbjct: 562 HHSEMLAVGLGLISTPHGRELQVVKKSRAC 591
>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
Length = 789
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 16/124 (12%)
Query: 443 DVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSL 502
DV G I Y + DG+ + V+W+SL I G +
Sbjct: 280 DVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSL---------------IGGVAQ 324
Query: 503 NGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMK 561
G+ EAL LF MR + +++FT+ + CL+ D+ G +LH T+ GL +
Sbjct: 325 AGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPV 384
Query: 562 AVAL 565
A AL
Sbjct: 385 ANAL 388
>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
Length = 684
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 16/99 (16%)
Query: 468 DGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT 527
DG+ R D VAWS++ ++GF G EALG++ MR + +E
Sbjct: 170 DGMPRKDHVAWSTM---------------VAGFVSAGRPVEALGMYSRMREHGVAEDEVV 214
Query: 528 -IDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
+ + AC + R G +H + LR G+ + A +L
Sbjct: 215 MVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSL 253
>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49170, chloroplastic-like [Cucumis sativus]
Length = 849
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 75/176 (42%), Gaps = 16/176 (9%)
Query: 388 SYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVING 447
S+ + S N R L F+ +++ Y P E C + + + D I G
Sbjct: 135 SWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYC--FAAATRACSTAEFVSVGDSIFG 192
Query: 448 VVSIGEY----VCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVV---LVISGF 500
V Y VCV L+ + F+ G R DLV S V E+ R V L+I+
Sbjct: 193 FVIKTGYLQSDVCVGCGLIDM-FVKG--RGDLV---SAFKVFEKMPERNAVTWTLMITRL 246
Query: 501 SLNGWYAEALGLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGGELHHKTLRTGL 555
G+ EA+ LF M E + FT+ + SAC + L G +LH + +R GL
Sbjct: 247 MQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGL 302
>gi|358357218|gb|AEU08449.1| pentatricopeptide repeat protein [Takakia lepidozioides]
Length = 152
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E A+ GLISLP GMP+ +I++ R+CG
Sbjct: 90 YHSEKLAIGFGLISLPPGMPIHIIKNLRVCG 120
>gi|302818974|ref|XP_002991159.1| hypothetical protein SELMODRAFT_133020 [Selaginella moellendorffii]
gi|300141090|gb|EFJ07805.1| hypothetical protein SELMODRAFT_133020 [Selaginella moellendorffii]
Length = 632
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
DGIKR + +W+ +++S ++ NG + ALGLF M ++ I + F
Sbjct: 15 FDGIKRWNEYSWT---------------MILSAYAHNGHFHAALGLFWRMLLEGIRVDSF 59
Query: 527 TIDLC-SACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
T+ + + C DL G + + +GLH + A AL
Sbjct: 60 TLSIAITVCSDLGDLSSGQSVRAVAVESGLHSDLVVATAL 99
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
HH+EM AV LGLIS P G ++V++ +R C
Sbjct: 562 HHSEMLAVGLGLISTPHGRELQVVKKSRAC 591
>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 810
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 17/100 (17%)
Query: 465 LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRV-DYIEA 523
+ D R + V+W+++ I G G+ EA LF+ M++ + IE
Sbjct: 190 MLFDKNNRKNAVSWNTM---------------IGGLCTKGYIFEAFNLFREMQMQEDIEV 234
Query: 524 NEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKA 562
NE T+ ++ ACL LR ELH ++R G + E+ A
Sbjct: 235 NEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVA 274
>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 939
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 16/91 (17%)
Query: 466 FLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANE 525
D ++R D V+W+++++ HE+ NG E L LF +M +E ++
Sbjct: 435 MFDEMERRDAVSWNAVIAAHEQ---------------NGNEEETLNLFASMLRLRMEPDQ 479
Query: 526 FTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
FT + AC + L G E+H++ +++GL
Sbjct: 480 FTYGSVLKACSSQQALNSGMEIHNRIIKSGL 510
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 26/144 (18%)
Query: 431 DKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWAS 490
+ IAR + + DVI G Y + D + + D+V+W++
Sbjct: 144 EDIIARGFES--DVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNA---------- 191
Query: 491 RRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI----DLCSACLAGDDLRKGGEL 546
+I+G+S NG EAL LF M+V+ I+ N T+ +C+ LA L +G ++
Sbjct: 192 -----IIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLA---LEQGKQI 243
Query: 547 HHKTLRTGLHHTEMKAVALGLISL 570
H +R+G+ + V GL+++
Sbjct: 244 HCYAIRSGIESDVL--VVNGLVNM 265
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTG 554
+I G+SLN + EAL F M+V I+ N T + + AC L +G ++H +R+G
Sbjct: 293 IIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSG 352
Query: 555 LHHTEMKAVAL 565
++ AL
Sbjct: 353 FESNDVVGNAL 363
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 23/117 (19%)
Query: 457 VAEILVMLLFLDGIKR-------PDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEA 509
V +LV LDG ++ DLV+W+S+ I+G+ GW EA
Sbjct: 120 VIHLLVSCGDLDGARKMFDKSCVRDLVSWNSM---------------INGYVRRGWAYEA 164
Query: 510 LGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
L ++ M+V+ I+ +E T I + S+C +DL G E H GL T A AL
Sbjct: 165 LNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANAL 221
>gi|358357230|gb|AEU08455.1| pentatricopeptide repeat protein [Takakia lepidozioides]
Length = 152
Score = 42.4 bits (98), Expect = 0.67, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLIS G P+RVI++ R+CG
Sbjct: 90 HHSEKLAIAFGLISTSPGTPLRVIKNLRVCG 120
>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
Length = 713
Score = 42.4 bits (98), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 18/128 (14%)
Query: 439 AARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVIS 498
AA V N ++++ Y ++ + + R D+V+WS+ +I+
Sbjct: 350 AASLSVENSIMTM--YAKCGQLTSSSVIFHEMTRRDIVSWST---------------IIA 392
Query: 499 GFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHH 557
G+ G +EA L MR++ + EF + + SAC L G +LH L GL H
Sbjct: 393 GYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEH 452
Query: 558 TEMKAVAL 565
T M AL
Sbjct: 453 TAMVLSAL 460
>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRT 553
++ISG+ G EALGLF MR Y+E + T + +AC L KG E+H+ +
Sbjct: 379 VMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEK 438
Query: 554 GLHHTEMKAVAL 565
L + E+ AL
Sbjct: 439 KLDNNEVVMGAL 450
>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
Length = 937
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 16/114 (14%)
Query: 460 ILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVL------VISGFSLNGWYAE----- 508
++V LF + I LV+ + E SRRV+L V++ +L G YAE
Sbjct: 388 VVVSGLFYNQIIGNALVSMYG--KIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPD 445
Query: 509 -ALGLFQTMRVDYIEANEFT-IDLCSACLA-GDDLRKGGELHHKTLRTGLHHTE 559
AL FQTMRV+ + +N T + + SACL GD L +G LH + G E
Sbjct: 446 KALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDE 499
>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
lyrata]
gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
lyrata]
Length = 950
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 25/30 (83%)
Query: 557 HTEMKAVALGLISLPDGMPVRVIRSARMCG 586
H+E AVA GL+ LP+G+P+RV+++ R+CG
Sbjct: 636 HSERLAVAYGLLKLPEGVPIRVMKNLRVCG 665
>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g15510, chloroplastic; Flags: Precursor
gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 866
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 18/114 (15%)
Query: 443 DVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSL 502
DV+N ++++ YV ++ L D + R D+++W+++ ISG+
Sbjct: 232 DVVNALITM--YVKCGDVKSARLLFDRMPRRDIISWNAM---------------ISGYFE 274
Query: 503 NGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
NG E L LF MR ++ + T+ + SAC D R G ++H + TG
Sbjct: 275 NGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGF 328
>gi|224070865|ref|XP_002303271.1| predicted protein [Populus trichocarpa]
gi|222840703|gb|EEE78250.1| predicted protein [Populus trichocarpa]
Length = 334
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E A+A GLIS P MP+R+I++ R+CG
Sbjct: 264 LYHSERLAIAYGLISTPARMPLRIIKNLRVCG 295
>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 800
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 19/122 (15%)
Query: 438 WAARRDVINGVVS---IGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVV 494
+A +R +++ V I Y + + L D I+ +VAW+S+
Sbjct: 427 YAIKRHILDEFVQNSLIDMYSKCGHVDLAYLIFDRIQSKSVVAWNSM------------- 473
Query: 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRT 553
I GFS G EA+ LF M ++ ++ NE T + AC L KG LHHK +
Sbjct: 474 --ICGFSQIGNSLEAIRLFDQMYLNCLDMNEVTFLTAIQACSHMGHLEKGKWLHHKLIAY 531
Query: 554 GL 555
G+
Sbjct: 532 GV 533
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 16/90 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
D + DLVAW+S VI+GF+ NG EAL L+ M + I+ + F
Sbjct: 179 FDKMPEKDLVAWNS---------------VINGFAENGKPEEALALYTEMDLKGIKPDGF 223
Query: 527 TI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
TI L SAC L G H ++ GL
Sbjct: 224 TIVSLLSACAKIGALTLGKRFHVYMIKVGL 253
>gi|190612831|gb|ACE80793.1| pentatricopeptide repeat protein [Psilotum nudum]
Length = 152
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLI+ P G P+R++++ R+CG
Sbjct: 90 HHSEKLAIAFGLITTPAGTPIRIMKNLRVCG 120
>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 42.4 bits (98), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E AVA GL+ +P GMP+RV+++ R+CG
Sbjct: 716 YHSEKLAVAYGLLKIPIGMPIRVMKNLRVCG 746
>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 42.4 bits (98), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E AVA GL+ +P GMP+RV+++ R+CG
Sbjct: 716 YHSEKLAVAYGLLKIPIGMPIRVMKNLRVCG 746
>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g56690, mitochondrial; Flags: Precursor
gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 704
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
H+E AVA GL+ LP+G+P+RV+++ R+CG
Sbjct: 635 RHSERLAVAYGLLKLPEGVPIRVMKNLRVCG 665
>gi|358347383|ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503672|gb|AES84875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 561
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 22/125 (17%)
Query: 446 NGVVSIGEYVCVAEILVMLLFLDGIKR----PDLVAWSSLLSVHEEWASRRVVLVISGFS 501
NG+VS Y I L ++ IK P++V+W++L ISG S
Sbjct: 123 NGLVS--GYSMQGRIDEALTIINRIKSSGITPNVVSWTAL---------------ISGCS 165
Query: 502 LNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEM 560
N Y +AL +F M+ + ++ N TI L AC L+KG ELH +++ G
Sbjct: 166 QNEKYMDALKIFSQMQAENVKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFVDDIY 225
Query: 561 KAVAL 565
A AL
Sbjct: 226 VATAL 230
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 16/90 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
D + DLVAW+S VI+GF+ NG EAL L+ M I+ + F
Sbjct: 179 FDKMPEKDLVAWNS---------------VINGFAENGKPEEALALYTEMNSKGIKPDGF 223
Query: 527 TI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
TI L SAC L G +H ++ GL
Sbjct: 224 TIVSLLSACAKIGALTLGKRVHVYMIKVGL 253
>gi|358357242|gb|AEU08461.1| pentatricopeptide repeat protein [Takakia lepidozioides]
Length = 152
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLI P G P+R+I++ R+CG
Sbjct: 90 HHSERLAIAFGLICTPPGAPIRIIKNLRVCG 120
>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 866
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 18/114 (15%)
Query: 443 DVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSL 502
DV+N ++++ YV ++ L D + R D+++W+++ ISG+
Sbjct: 232 DVVNALITM--YVKCGDVKSARLLFDRMPRRDIISWNAM---------------ISGYFE 274
Query: 503 NGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
NG E L LF MR ++ + T+ + SAC D R G ++H + TG
Sbjct: 275 NGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGF 328
>gi|358357226|gb|AEU08453.1| pentatricopeptide repeat protein [Takakia lepidozioides]
Length = 152
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+ GLIS P G P+R++++ R+CG
Sbjct: 90 HHSEKLAICFGLISTPPGTPIRIVKNLRICG 120
>gi|297796091|ref|XP_002865930.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311765|gb|EFH42189.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 878
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRT 553
++IS F+ + +A AL LF+ M I NEFT + +C DL GG +H L+T
Sbjct: 93 VMISAFTKSQEFASALSLFEEMMASGIHPNEFTFSSVIRSCAGLGDLSYGGRVHGSVLKT 152
Query: 554 G 554
G
Sbjct: 153 G 153
>gi|297794357|ref|XP_002865063.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310898|gb|EFH41322.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 532
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 16/88 (18%)
Query: 468 DGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT 527
+ ++ D+V+W++LLS GF NG EALG+F M + +E +EFT
Sbjct: 143 ESVEEKDVVSWNALLS---------------GFLRNGKGKEALGVFAAMCRERVEISEFT 187
Query: 528 I-DLCSACLAGDDLRKGGELHHKTLRTG 554
+ + C + L++G ++H + TG
Sbjct: 188 LSSVVKTCASLKILQQGKQVHAMVMVTG 215
>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
Length = 637
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCS 532
D+VAWS++ ++ ++ NG EALGLF+ M +D + N+ T +
Sbjct: 126 DVVAWSAM---------------VAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLD 170
Query: 533 ACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
AC + DLR G +H + G+ + AL
Sbjct: 171 ACASLGDLRSGALMHQRVEAQGIQSGVVVGTAL 203
>gi|357487403|ref|XP_003613989.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
gi|355515324|gb|AES96947.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
Length = 828
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 16/86 (18%)
Query: 470 IKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-I 528
IK +VAW+ + I GFS NG EAL LF M + +E N+ T +
Sbjct: 466 IKHKSIVAWNCM---------------ICGFSQNGISVEALSLFDEMFKNRLEINKVTFL 510
Query: 529 DLCSACLAGDDLRKGGELHHKTLRTG 554
AC L KG +HHK + TG
Sbjct: 511 SAIQACSNLGYLDKGKWIHHKIIVTG 536
>gi|302759985|ref|XP_002963415.1| hypothetical protein SELMODRAFT_61513 [Selaginella moellendorffii]
gi|300168683|gb|EFJ35286.1| hypothetical protein SELMODRAFT_61513 [Selaginella moellendorffii]
Length = 500
Score = 42.0 bits (97), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRT 553
++IS + NG Y EAL F+ M+ + I ++FT D+ +AC + DL +G +H L +
Sbjct: 55 ILISAAARNGLYREALNAFERMKREGIPRDKFTYADVITACCSLKDLARGRAVHAGLLVS 114
Query: 554 GLHHTEMKAVAL 565
G+ + VAL
Sbjct: 115 GIQPDDFLRVAL 126
>gi|302782567|ref|XP_002973057.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
gi|300159658|gb|EFJ26278.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
Length = 531
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 17/88 (19%)
Query: 468 DGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT 527
DGIK D V+W+S+ IS ++ NG+ EAL L+Q M D I+ + T
Sbjct: 16 DGIKNRDAVSWTSM---------------ISSYANNGFCDEALDLYQQMDADGIQPDSIT 60
Query: 528 IDLCSACLAGDDLRKGGELHHKTLRTGL 555
SA LA L G +H + + + +
Sbjct: 61 --FTSALLACTKLADGKAIHARIVSSNM 86
>gi|30103011|gb|AAP21424.1| putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
gi|222626012|gb|EEE60144.1| hypothetical protein OsJ_13038 [Oryza sativa Japonica Group]
gi|374087691|gb|AEY82646.1| chloroplast ALBL [Oryza sativa Japonica Group]
Length = 859
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 16/90 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
DG+ R DL+AWS++ I +++ G Y++ L L TM + + + F
Sbjct: 105 FDGMGRRDLLAWSAM---------------IGAYAIRGMYSDVLALAVTMVEEGVLPDRF 149
Query: 527 TID-LCSACLAGDDLRKGGELHHKTLRTGL 555
I + AC +DL G LH +R G
Sbjct: 150 LITRILQACAYAEDLELGRALHSMAIRRGF 179
>gi|125563219|gb|EAZ08599.1| hypothetical protein OsI_30870 [Oryza sativa Indica Group]
Length = 410
Score = 42.0 bits (97), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 48/105 (45%), Gaps = 23/105 (21%)
Query: 503 NGWYAEALGLFQTMRVDYIEANEFTIDLCSACLAGDDLRKGGELHHKTLRTG-------- 554
NG EA+ LF+ M+ + IE N TI S + K L + R G
Sbjct: 269 NGRDLEAVDLFREMQSEGIEPNSVTIP--SHPMMAAITEKLKHLTMEMRRLGFAPNTDYV 326
Query: 555 LH-------------HTEMKAVALGLISLPDGMPVRVIRSARMCG 586
LH H+E AVALGLIS G P+RVI++ R+CG
Sbjct: 327 LHDVEEQEKDDILSVHSEKLAVALGLISTSHGTPLRVIKNLRICG 371
>gi|242077973|ref|XP_002443755.1| hypothetical protein SORBIDRAFT_07g001380 [Sorghum bicolor]
gi|241940105|gb|EES13250.1| hypothetical protein SORBIDRAFT_07g001380 [Sorghum bicolor]
Length = 871
Score = 42.0 bits (97), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 24/123 (19%)
Query: 441 RRDVINGVVS----IGEYVCVAEILVMLLFLDGIKR----PDLVAWSSLLSVHEEWASRR 492
R + GVV+ I Y E+ V + L+ ++ PD+V W+SL
Sbjct: 260 REGTLPGVVTWNTLISSYARSGELDVAMEMLEQMEESGVAPDVVTWTSL----------- 308
Query: 493 VVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTL 551
+SGF + EAL F MR+ +E N TI SAC + L +G ELH +
Sbjct: 309 ----VSGFVHSDRSGEALRCFMRMRLAGVEPNGMTIASAISACASLRLLSQGMELHCHAI 364
Query: 552 RTG 554
+ G
Sbjct: 365 KVG 367
>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33680-like [Cucumis sativus]
Length = 710
Score = 42.0 bits (97), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 16/90 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
D +K PD+V W+S+ ISG++ NG AL L+ M+++ I +E
Sbjct: 373 FDYLKEPDIVLWTSM---------------ISGYAQNGENETALTLYCRMQMERIMPHEL 417
Query: 527 TI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
T+ + AC + L +G ++H +T++ G
Sbjct: 418 TMASVLRACSSLAALEQGKQIHAQTIKYGF 447
>gi|294461906|gb|ADE76509.1| unknown [Picea sitchensis]
Length = 246
Score = 42.0 bits (97), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLIS G+PVR+I++ R+CG
Sbjct: 177 HHSEKLAIAFGLISTLPGLPVRIIKNLRVCG 207
>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 668
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 18/119 (15%)
Query: 438 WAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVI 497
+ + +V G + Y E+ L D ++ + V+W++L I
Sbjct: 224 YGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNAL---------------I 268
Query: 498 SGFSLNGWYAEALGLFQTMRVDYIEANEFTID--LCSACLAGDDLRKGGELHHKTLRTG 554
SGF+ G EALGLF M+ + A EFT LCS+ G L +G LH +++G
Sbjct: 269 SGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTG-SLEQGKWLHAHMMKSG 326
>gi|218193953|gb|EEC76380.1| hypothetical protein OsI_13992 [Oryza sativa Indica Group]
Length = 822
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 16/90 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
DG+ R DL+AWS++ I +++ G Y++ L L TM + + + F
Sbjct: 68 FDGMGRRDLLAWSAM---------------IGAYAIRGMYSDVLALAVTMVEEGVLPDRF 112
Query: 527 TID-LCSACLAGDDLRKGGELHHKTLRTGL 555
I + AC +DL G LH +R G
Sbjct: 113 LITRILQACAYAEDLELGRALHSMAIRRGF 142
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 16/101 (15%)
Query: 466 FLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANE 525
DG+ D++ W++ VISG++ NG EA+ LF M+ D + N+
Sbjct: 275 IFDGMAARDVITWNA---------------VISGYAQNGMADEAISLFHAMKEDCVTENK 319
Query: 526 FTID-LCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
T+ + SAC L G ++ + G H A AL
Sbjct: 320 ITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATAL 360
>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Vitis vinifera]
Length = 684
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E A+A GLIS+P G+P+R+ ++ R+CG
Sbjct: 615 YHSEKIALAFGLISIPAGVPIRITKNLRICG 645
>gi|302788574|ref|XP_002976056.1| hypothetical protein SELMODRAFT_104474 [Selaginella moellendorffii]
gi|300156332|gb|EFJ22961.1| hypothetical protein SELMODRAFT_104474 [Selaginella moellendorffii]
Length = 665
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFT----IDLCSACLAGDDLRKGGELHHKTL 551
+I+ +SLNG +AL L++ M ++ ++ +E+T +D+CS +AGD L +G LH +
Sbjct: 263 MIAAYSLNGDGRQALSLYKKMDLEGLKPDEYTFTSLLDVCS--IAGDALAEGRALHRRLE 320
Query: 552 RTGLHHTEMKAVAL 565
GL + A AL
Sbjct: 321 AKGLEKKMVLATAL 334
>gi|359481819|ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vitis vinifera]
Length = 977
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 3/43 (6%)
Query: 544 GELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
GE ++T+R +H+E A+A GLIS P P+RV+++ R+CG
Sbjct: 393 GEEKNQTIR---YHSERLAIAFGLISFPPERPIRVMKNLRVCG 432
>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
Length = 703
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E AVA GL+ +P G P+RV+++ R+CG
Sbjct: 634 HHSEKMAVAYGLLKVPVGKPIRVMKNLRVCG 664
>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
Length = 1084
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 104/245 (42%), Gaps = 28/245 (11%)
Query: 335 QAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAKRVKKFVEKDAKNWSGPGSYPSTKS 394
Q H + + +S G+ I + ++YG + + ++ EKD +W+ +
Sbjct: 366 QIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHE 425
Query: 395 FHTNRLQAKRQLRRFISDVDSSYLPP--EGCPNYKPPDD--KFIARLW----AARRDVIN 446
+ + L A +++++ D+ L GC K + AR++ + + N
Sbjct: 426 YCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYSGDVSIWN 485
Query: 447 GVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWY 506
+V++ Y I + I+ D + W+ L +SGF+ +G +
Sbjct: 486 ALVNL--YARCGRIREAFSSFEEIEHKDEITWNGL---------------VSGFAQSGLH 528
Query: 507 AEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
EAL +F M ++ N FT + SA ++++G ++H + ++TG H+ V
Sbjct: 529 EEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTG--HSFETEVGN 586
Query: 566 GLISL 570
LISL
Sbjct: 587 ALISL 591
>gi|190612773|gb|ACE80764.1| pentatricopeptide repeat protein [Porella platyphylla]
gi|358357142|gb|AEU08411.1| pentatricopeptide repeat protein [Porella platyphylla]
Length = 153
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLIS P G P+R+ ++ R+CG
Sbjct: 91 HHSEKLAIAFGLISTPPGTPLRIFKNLRVCG 121
>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E A+A GLIS+P G+P+R+ ++ R+CG
Sbjct: 514 YHSEKIALAFGLISIPAGVPIRITKNLRICG 544
>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 684
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E A+A GLI+LP G+P+R+ ++ R+CG
Sbjct: 615 YHSEKIALAFGLIALPQGVPIRITKNLRICG 645
>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 903
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 22/127 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
D ++R D V+W+++++ HE+ NG E L LF +M IE +EF
Sbjct: 440 FDEMRRRDAVSWNAIIAAHEQ---------------NGKGYETLFLFVSMLRSRIEPDEF 484
Query: 527 TIDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL-------GLISLPDGMPVRVI 579
T G L G E+H +++G+ +L G+I + + R
Sbjct: 485 TFGSILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFF 544
Query: 580 RSARMCG 586
+ A + G
Sbjct: 545 QRANVSG 551
>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
Length = 652
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCS 532
D+VAWS++ ++ ++ NG EALGLF+ M +D + N+ T +
Sbjct: 141 DVVAWSAM---------------VAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLD 185
Query: 533 ACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
AC + DLR G +H + G+ + AL
Sbjct: 186 ACASLGDLRSGALMHQRVEAQGIQSGVVVGTAL 218
>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 741
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 20/117 (17%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFS 501
+D+++ I Y ++ L + ++ ++V+W+SL I+G+
Sbjct: 386 KDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSL---------------ITGYV 430
Query: 502 LNGWYAEALGLFQTMRVDYIEANEFTIDLC---SACLAGDDLRKGGELHHKTLRTGL 555
NG Y EAL F M+ + ++ TI C SA LA L G +LHH T++TG
Sbjct: 431 QNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAA--LNVGVQLHHLTIKTGF 485
>gi|15221304|ref|NP_177599.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169837|sp|Q9CA56.1|PP121_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74600, chloroplastic; Flags: Precursor
gi|12324789|gb|AAG52351.1|AC011765_3 hypothetical protein; 84160-81473 [Arabidopsis thaliana]
gi|332197493|gb|AEE35614.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 895
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 488 WASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGEL 546
WAS +ISGF+ G+ EA+GLF M D +E T+ + + C + L +G E+
Sbjct: 519 WAS-----MISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEI 573
Query: 547 HHKTLRTGL 555
H TLR G+
Sbjct: 574 HGYTLRAGI 582
>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
Length = 574
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 557 HTEMKAVALGLISLPDGMPVRVIRSARMCG 586
H+E A+A GLI+ PDG P+R+ ++ R+CG
Sbjct: 506 HSEKLAIAFGLIATPDGTPIRITKNLRVCG 535
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 22/114 (19%)
Query: 444 VINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLN 503
+I+ +VS+GE L +F +G R DLV+W+SL I+G+
Sbjct: 195 IIHMLVSVGE-----SGLAHKVFDEGCVR-DLVSWNSL---------------INGYVRR 233
Query: 504 GWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLH 556
EA+G++Q M ++++ +E T I + SAC + L+ G E+H +GL+
Sbjct: 234 RQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLN 287
>gi|302793458|ref|XP_002978494.1| hypothetical protein SELMODRAFT_108969 [Selaginella moellendorffii]
gi|300153843|gb|EFJ20480.1| hypothetical protein SELMODRAFT_108969 [Selaginella moellendorffii]
Length = 644
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRT 553
++IS ++ NG + EAL LFQ M ++ ++ N FT+ + +AC +D + +H + +
Sbjct: 29 IIISAYAQNGHFREALQLFQAMDLEGMQPNSFTLSSVVAACSGLEDPLQARAIHSRIVGA 88
Query: 554 GLHHTEMKAVAL-GLISLPDG 573
G E A A+ + S DG
Sbjct: 89 GFGSDEFVATAMVAMFSRCDG 109
>gi|302784086|ref|XP_002973815.1| hypothetical protein SELMODRAFT_100620 [Selaginella moellendorffii]
gi|300158147|gb|EFJ24770.1| hypothetical protein SELMODRAFT_100620 [Selaginella moellendorffii]
Length = 564
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 24/146 (16%)
Query: 441 RRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGF 500
+RDV++ + Y I DG+ D +AW+++++ + + +G
Sbjct: 268 KRDVVSATALVVAYARHGHITQARALFDGLPVRDTIAWNAMIAAYTQ----------AGL 317
Query: 501 SLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTE 559
+L +AL LF+ M ++ + + ++ AC LR+G +H L + L H+
Sbjct: 318 AL-----DALNLFKVMDLEAVPLDHASLSSALDACATLAALREGKLIHSSILHSELFHSN 372
Query: 560 MKAVALGLISLPDGMPVRVIRSARMC 585
VA LI++ R AR+C
Sbjct: 373 -TIVATSLITM-------YARCARLC 390
>gi|255542942|ref|XP_002512534.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548495|gb|EEF49986.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 444
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 16/106 (15%)
Query: 451 IGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEAL 510
I Y+ EI D + DLV+WS++ ISG++ + +AE L
Sbjct: 232 ISGYLKCGEIEKAKALFDIMNDKDLVSWSAM---------------ISGYAQHDRFAETL 276
Query: 511 GLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGL 555
LFQ M++D ++ +E T + + SAC L +G +H + GL
Sbjct: 277 ALFQEMQLDGVKPDETTLVSVVSACTHLAALDQGKWIHLYLRKNGL 322
>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 462
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 16/90 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
D + DLVAW+S VI+GF+ NG EAL L+ M I+ + F
Sbjct: 46 FDKMPEKDLVAWNS---------------VINGFAENGKPEEALALYTEMNSKGIKPDGF 90
Query: 527 TI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
TI L SAC L G +H ++ GL
Sbjct: 91 TIVSLLSACAKIGALTLGKRVHVYMIKVGL 120
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 18/94 (19%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFS 501
R V N +V + Y +L+ + D I DLV+W+ ++I+G+
Sbjct: 534 RHVANSLVDM--YAKCGALLLAHMLFDDIASKDLVSWT---------------VMIAGYG 576
Query: 502 LNGWYAEALGLFQTMRVDYIEANEFT-IDLCSAC 534
++G+ EA+ LF MR IEA+E + + L AC
Sbjct: 577 MHGFGKEAIALFNQMRQAGIEADEISFVSLLYAC 610
>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g02750-like [Cucumis sativus]
Length = 741
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 20/117 (17%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFS 501
+D+++ I Y ++ L + ++ ++V+W+SL I+G+
Sbjct: 386 KDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSL---------------ITGYV 430
Query: 502 LNGWYAEALGLFQTMRVDYIEANEFTIDLC---SACLAGDDLRKGGELHHKTLRTGL 555
NG Y EAL F M+ + ++ TI C SA LA L G +LHH T++TG
Sbjct: 431 QNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAA--LNVGVQLHHLTIKTGF 485
>gi|255536747|ref|XP_002509440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549339|gb|EEF50827.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 678
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 16/78 (20%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
+D PDLV+WS+L ISG+S NG+ EA+ F M + ++ NEF
Sbjct: 164 VDESTEPDLVSWSAL---------------ISGYSQNGFGKEAISAFYEMHLLGVKCNEF 208
Query: 527 TI-DLCSACLAGDDLRKG 543
T L AC + D+ G
Sbjct: 209 TFPSLLKACTSTTDMWLG 226
>gi|147780613|emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
Length = 654
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 16/90 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
D ++ PD+V W+S+ I G+ NG +AL L+ M ++ I NE
Sbjct: 368 FDYLQEPDIVLWTSM---------------IGGYVQNGENEDALSLYGRMEMEGILPNEL 412
Query: 527 TI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
T+ + AC + L +G ++H +T++ G
Sbjct: 413 TMASVLKACSSLAALEQGKQIHARTVKYGF 442
>gi|108711657|gb|ABF99452.1| Calreticulin family protein, expressed [Oryza sativa Japonica
Group]
Length = 1111
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 16/90 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
DG+ R DL+AWS++ I +++ G Y++ L L TM + + + F
Sbjct: 105 FDGMGRRDLLAWSAM---------------IGAYAIRGMYSDVLALAVTMVEEGVLPDRF 149
Query: 527 TID-LCSACLAGDDLRKGGELHHKTLRTGL 555
I + AC +DL G LH +R G
Sbjct: 150 LITRILQACAYAEDLELGRALHSMAIRRGF 179
>gi|302773996|ref|XP_002970415.1| hypothetical protein SELMODRAFT_93286 [Selaginella moellendorffii]
gi|300161931|gb|EFJ28545.1| hypothetical protein SELMODRAFT_93286 [Selaginella moellendorffii]
Length = 581
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRT 553
++IS ++ NG + EAL LFQ M ++ ++ N FT+ + +AC +D + +H + +
Sbjct: 29 IIISAYAQNGHFREALQLFQAMDLEGMQPNSFTLSSVVAACSGLEDPLQARAIHSRIVGA 88
Query: 554 GLHHTEMKAVAL-GLISLPDG 573
G E A A+ + S DG
Sbjct: 89 GFGSDEFVATAMVAMFSRCDG 109
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 18/94 (19%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFS 501
R V N +V + Y +L+ + D I DLV+W+ ++I+G+
Sbjct: 383 RHVANSLVDM--YAKCGALLLAHMLFDDIASKDLVSWT---------------VMIAGYG 425
Query: 502 LNGWYAEALGLFQTMRVDYIEANEFT-IDLCSAC 534
++G+ EA+ LF MR IEA+E + + L AC
Sbjct: 426 MHGFGKEAIALFNQMRQAGIEADEISFVSLLYAC 459
>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
Length = 792
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 17/88 (19%)
Query: 468 DGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT 527
DGIK D V+W+S+ IS ++ NG+ EAL L+Q M D I+ + +
Sbjct: 205 DGIKNRDAVSWTSM---------------ISSYANNGFCDEALDLYQQMDADGIQPD--S 247
Query: 528 IDLCSACLAGDDLRKGGELHHKTLRTGL 555
I SA LA L G +H + + + +
Sbjct: 248 ITFTSALLACTKLVDGKAIHARIVSSNM 275
>gi|242075864|ref|XP_002447868.1| hypothetical protein SORBIDRAFT_06g017180 [Sorghum bicolor]
gi|241939051|gb|EES12196.1| hypothetical protein SORBIDRAFT_06g017180 [Sorghum bicolor]
Length = 714
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 439 AARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVIS 498
A ++DV+ + I DG+++ +LV+W+++L+ +
Sbjct: 314 APKKDVVTSTSVVSGLAACGRIADAKRVFDGMEQHNLVSWNAMLTG-----------CVK 362
Query: 499 GFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
L G AL LFQ MR + E + T+ + +AC DL KG ELH L+ GL
Sbjct: 363 SMDLTG----ALDLFQQMRHETKELDVVTLGSVLNACTGLLDLGKGEELHALALKCGL 416
>gi|297838697|ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
lyrata]
gi|297333071|gb|EFH63489.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
lyrata]
Length = 1347
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 16/90 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
D IK +V W+S+L GFS NG EA+ LF M +E N+
Sbjct: 1020 FDQIKHRSIVTWNSMLC---------------GFSQNGNSLEAINLFDYMYHSCLEINKV 1064
Query: 527 T-IDLCSACLAGDDLRKGGELHHKTLRTGL 555
T + + AC + L KG +HHK + G+
Sbjct: 1065 TFLAVIQACSSIGSLEKGRWVHHKLIVCGI 1094
>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
Length = 695
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 17/107 (15%)
Query: 466 FLDGIKRPDLVAWSSLLSVH-------------EEWASRRVV---LVISGFSLNGWYAEA 509
D + + D +W+++LS++ + SR V VISGF+ NG A
Sbjct: 80 LFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPA 139
Query: 510 LGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGL 555
LG+F M+ + ++ E+T + + +AC DLR+G ++H + + L
Sbjct: 140 LGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNL 186
>gi|190612943|gb|ACE80849.1| pentatricopeptide repeat protein [Lepidogyna hodgsoniae]
Length = 152
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLIS P G P+R+ ++ R+CG
Sbjct: 90 HHSEKLAIAFGLISTPPGTPLRIFKNLRVCG 120
>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
Length = 818
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 101/248 (40%), Gaps = 29/248 (11%)
Query: 332 QFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAKRVKKFVEKDAKNW-------S 384
Q + H + F S LDS + + + +G+ + + + +D +W S
Sbjct: 125 QGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHS 184
Query: 385 GPGSYPST-KSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRD 443
G + + F + K +I +V S + PE P + + +A + + D
Sbjct: 185 QSGDWSGALRIFKEMKCDMKPNSTTYI-NVISGFSTPEVLPEGRKIHAEIVANGFDS--D 241
Query: 444 VINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLN 503
++ I Y D +K+ D+V+W+ ++I + N
Sbjct: 242 LVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWN---------------VMIGCYVQN 286
Query: 504 GWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKA 562
G + EAL L+Q + ++ + + T + + AC + L +G +H L GL +E+ A
Sbjct: 287 GDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGL-DSEV-A 344
Query: 563 VALGLISL 570
VA L+++
Sbjct: 345 VATALVNM 352
>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g03380, mitochondrial; Flags: Precursor
gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 689
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 16/83 (19%)
Query: 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCS 532
D+VAW+S +ISGFS NG EAL LF M + + N T+ L S
Sbjct: 407 DIVAWNS---------------IISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFS 451
Query: 533 ACLAGDDLRKGGELHHKTLRTGL 555
AC + L G LH +++ G
Sbjct: 452 ACASLGSLAVGSSLHAYSVKLGF 474
>gi|326528959|dbj|BAJ97501.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 514
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E AVA GL+++P G P+RV ++ R+CG
Sbjct: 445 HHSERLAVAFGLLAVPAGAPIRVFKNLRVCG 475
>gi|302776814|ref|XP_002971551.1| hypothetical protein SELMODRAFT_61534 [Selaginella moellendorffii]
gi|300160683|gb|EFJ27300.1| hypothetical protein SELMODRAFT_61534 [Selaginella moellendorffii]
Length = 505
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRT 553
++IS + NG Y EAL F+ M+ + I ++FT D+ +AC + DL +G +H L +
Sbjct: 60 ILISAAARNGLYREALDAFERMKREGIPRDKFTYADVITACCSLKDLARGRAVHAGLLVS 119
Query: 554 GLHHTEMKAVAL 565
G+ + VAL
Sbjct: 120 GIQPDDFLRVAL 131
>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
Length = 1753
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 16/83 (19%)
Query: 472 RPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DL 530
RP++V+WS+ VI GF+ G EAL LF+ M++ ++AN TI +
Sbjct: 1211 RPNVVSWSA---------------VIGGFASKGQGEEALELFRRMQLAKVKANSVTIASV 1255
Query: 531 CSACLAGDDLRKGGELHHKTLRT 553
S C L G E+H +R+
Sbjct: 1256 LSVCAELAALHLGREIHGHVVRS 1278
>gi|115455577|ref|NP_001051389.1| Os03g0767700 [Oryza sativa Japonica Group]
gi|31415922|gb|AAP50943.1| hypothetical protein [Oryza sativa Japonica Group]
gi|40539080|gb|AAR87337.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711268|gb|ABF99063.1| expressed protein [Oryza sativa Japonica Group]
gi|113549860|dbj|BAF13303.1| Os03g0767700 [Oryza sativa Japonica Group]
gi|125588042|gb|EAZ28706.1| hypothetical protein OsJ_12720 [Oryza sativa Japonica Group]
gi|215707074|dbj|BAG93534.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 296
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 552 RTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
R ++H+E A+A GL+S P G P+RVI++ R+CG
Sbjct: 223 RALMYHSERLAIAFGLVSTPPGTPLRVIKNLRICG 257
>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 431 DKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWAS 490
DK I R A+ +I G + GE + VAE L + ++ ++V+W+++
Sbjct: 240 DKMIVRDMASWNALIAGYMKEGE-IGVAEDL-----FERMEHRNIVSWTAM--------- 284
Query: 491 RRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTIDLCS---ACLAGDDLRKGGELH 547
ISG++ NG+ +ALGLF M D E + + S AC L +G +H
Sbjct: 285 ------ISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIH 338
Query: 548 HKTLRTGLH 556
GLH
Sbjct: 339 DFANGIGLH 347
>gi|125542459|gb|EAY88598.1| hypothetical protein OsI_10074 [Oryza sativa Indica Group]
Length = 296
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 552 RTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
R ++H+E A+A GL+S P G P+RVI++ R+CG
Sbjct: 223 RALMYHSERLAIAFGLVSTPPGTPLRVIKNLRICG 257
>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera]
gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
Length = 703
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 16/90 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
D ++ PD+V W+S+ I G+ NG +AL L+ M ++ I NE
Sbjct: 368 FDYLQEPDIVLWTSM---------------IGGYVQNGENEDALSLYGRMEMEGILPNEL 412
Query: 527 TI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
T+ + AC + L +G ++H +T++ G
Sbjct: 413 TMASVLKACSSLAALEQGKQIHARTVKYGF 442
>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
Length = 631
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 545 ELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
E K G +H+E A+A GLI+LP G+P+R+ ++ R+CG
Sbjct: 552 EEEEKMTEVG-YHSEKIALAFGLIALPPGVPIRITKNLRICG 592
>gi|15233050|ref|NP_191676.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|6850884|emb|CAB71047.1| putative protein [Arabidopsis thaliana]
gi|332646643|gb|AEE80164.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 783
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E AVA GL+ +P G P+R+I++ R+CG
Sbjct: 698 YHSEKLAVAFGLLVVPSGAPIRIIKNLRVCG 728
>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 708
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 16/85 (18%)
Query: 472 RPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DL 530
D+VAW+S +ISGFS NG EAL LF M + + N T+ L
Sbjct: 417 EKDIVAWNS---------------IISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASL 461
Query: 531 CSACLAGDDLRKGGELHHKTLRTGL 555
SAC + L G LH +++ G
Sbjct: 462 FSACASLGSLAIGSSLHAYSVKLGF 486
>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 886
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 30/42 (71%)
Query: 544 GELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMC 585
G + ++ R+ +HH+E AVA G++SLP MP+ ++++ R+C
Sbjct: 805 GYVRTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRIC 846
>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Glycine max]
Length = 727
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 18/113 (15%)
Query: 444 VINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLN 503
V NG+V++ Y I V + DG+ +V+W+S +ISG++ N
Sbjct: 191 VQNGLVAL--YAKCGHIGVAKVVFDGLYHRTIVSWTS---------------IISGYAQN 233
Query: 504 GWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGL 555
G EAL +F MR + ++ + + + A DDL +G +H ++ GL
Sbjct: 234 GKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGL 286
>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
Length = 832
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554
+I G+ NG EAL LF+ M+++ I+ + F++ + S+C++ D +KG ELH+ +R
Sbjct: 350 MIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNT 409
Query: 555 LHHTEMKAVAL 565
+ + V L
Sbjct: 410 MEEEGILQVVL 420
>gi|302814320|ref|XP_002988844.1| hypothetical protein SELMODRAFT_41900 [Selaginella moellendorffii]
gi|300143415|gb|EFJ10106.1| hypothetical protein SELMODRAFT_41900 [Selaginella moellendorffii]
Length = 423
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRT 553
+ I+ F++NG Y+ AL LF+ M +D ++AN T +++ SAC D R+ +H + +
Sbjct: 33 IAIAAFAVNGDYSGALALFRKMDLDGVKANFVTYVNVISACSGLLDPRECKRVHSRVVEE 92
Query: 554 GLHHTEMKAVAL 565
G + A AL
Sbjct: 93 GFDRDLVVATAL 104
>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
Length = 861
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 22/127 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
D ++R D V+W+++++ HE+ NG E L LF +M IE +EF
Sbjct: 398 FDEMRRRDAVSWNAIIAAHEQ---------------NGKGYETLFLFVSMLRSRIEPDEF 442
Query: 527 TIDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL-------GLISLPDGMPVRVI 579
T G L G E+H +++G+ +L G+I + + R
Sbjct: 443 TFGSILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFF 502
Query: 580 RSARMCG 586
+ A + G
Sbjct: 503 QRANVSG 509
>gi|449448934|ref|XP_004142220.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37320-like [Cucumis sativus]
gi|449502632|ref|XP_004161699.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37320-like [Cucumis sativus]
Length = 524
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 479 SSLLSVHEEWASRRVV---LVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSAC 534
S+ V +E R VV +I+GF++ L LFQ M+ ++ NEFT + + +AC
Sbjct: 182 SNAYRVFDEMPVRNVVSWTAIIAGFAVEWQVNMCLELFQEMKRMALQPNEFTFVTILTAC 241
Query: 535 LAGDDLRKGGELHHKTLRTGLHHTEMKAVALGLISL 570
L G LH +T++ G H VA LIS+
Sbjct: 242 TGSGALGVGRSLHCQTVKMGFH--SYLHVANALISM 275
>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 748
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
HH+E A+A GL+ +P G+P+RV+++ R+C
Sbjct: 679 HHSEKLAIAFGLLFIPPGLPIRVVKNLRVC 708
>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 596
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 544 GELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
GE +++R +H+E A+A G I+ P G P+RV+++ R+CG
Sbjct: 518 GEEKSRSIR---YHSERLAIAFGFITFPHGQPIRVMKNLRVCG 557
>gi|297820962|ref|XP_002878364.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324202|gb|EFH54623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 767
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E AVA GL+ +P G P+R+I++ R+CG
Sbjct: 682 YHSEKLAVAFGLLVVPSGAPIRIIKNLRVCG 712
>gi|255561307|ref|XP_002521664.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539055|gb|EEF40651.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 574
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFS 501
RD ++ I YV ++ DG++ +V W+++ ISG+
Sbjct: 225 RDELSWTTIITGYVKNDDLDAAREVFDGMREKLVVVWNAM---------------ISGYM 269
Query: 502 LNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRT 553
G Y EAL +F+ M + ++ +EFT + SAC L+ G ++H L+T
Sbjct: 270 HRGLYQEALEMFRKMYLAGLKLDEFTYTSIISACANAGFLQHGKQVHAYILKT 322
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GL+ P G P+R++++ R+CG
Sbjct: 799 HHSEKLAIAYGLLKTPSGTPIRIMKNLRVCG 829
>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Glycine max]
Length = 764
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 16/92 (17%)
Query: 465 LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN 524
+ D + + +LV+W+++ I+G++ NG+ +AL LF MR D+ +
Sbjct: 425 IVFDKMNKRNLVSWNAM---------------ITGYAQNGYVCKALFLFNEMRSDHQTPD 469
Query: 525 EFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
TI L C + L G +H +R GL
Sbjct: 470 SITIVSLLQGCASTGQLHLGKWIHSFVIRNGL 501
>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 861
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 15/89 (16%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
D ++R D V+W+++++ HE+ NG E L LF +M IE +EF
Sbjct: 398 FDEMRRRDAVSWNAIIAAHEQ---------------NGKGYETLFLFVSMLRSRIEPDEF 442
Query: 527 TIDLCSACLAGDDLRKGGELHHKTLRTGL 555
T G L G E+H +++G+
Sbjct: 443 TFGSVLKACTGGSLGYGMEIHSSIVKSGM 471
>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 29/115 (25%)
Query: 470 IKRPDLVAWSSLL-------------------------SVHEEWASRRVVL---VISGFS 501
IK+ DLV+W+++L SV E ++R VV+ +IS +
Sbjct: 274 IKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACA 333
Query: 502 LNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGL 555
+G AL L + M + +E N T + AC LR+G E+H +R GL
Sbjct: 334 QSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGL 388
>gi|359492699|ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Vitis vinifera]
Length = 1545
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 16/83 (19%)
Query: 473 PDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLC 531
PD+ W+S+ ISGF+ N ++AL LF+ M + IE N T+
Sbjct: 319 PDVFTWTSM---------------ISGFAQNNRRSQALELFREMLLAGIEPNGVTVTSGI 363
Query: 532 SACLAGDDLRKGGELHHKTLRTG 554
SAC + L+KG ELH ++ G
Sbjct: 364 SACASLKALKKGMELHSVAVKIG 386
>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 752
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 16/102 (15%)
Query: 465 LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN 524
L GI R D+++WS++++V +S G+ EA MR + + N
Sbjct: 415 LVFHGITRKDIISWSTIIAV---------------YSQGGYAKEAFDYLSWMRREGPKPN 459
Query: 525 EFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
EF + + S C + L +G ++H L G+ H M AL
Sbjct: 460 EFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSAL 501
>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 960
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 88/221 (39%), Gaps = 31/221 (14%)
Query: 378 KDAKNWSGPGSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKP----PDDKF 433
KD+ +W+ S S FH+ + + R +D +Y P K D +
Sbjct: 105 KDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRL 164
Query: 434 IARLWAARRDVINGVVS------IGEYVCVAEI-LVMLLFLDGIKRPDLVAWSSL----- 481
+L A + G+ + +G YV ++ L +F D I+RP L W+S+
Sbjct: 165 AIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFD-IERPSLFCWNSMIYGYS 223
Query: 482 --------LSVHEEWASRRVV---LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-D 529
L + R V +IS FS +G+ + L +F M N T
Sbjct: 224 QMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGS 283
Query: 530 LCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALGLISL 570
+ SAC + DL+ G LH + LR + H+ GLI +
Sbjct: 284 VLSACASTSDLKWGAHLHARILR--MEHSLDLVFGNGLIDM 322
>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
Length = 569
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L H+E A+A GLI LP G P+RV ++ R+CG
Sbjct: 499 LWHSEKLAIAYGLIKLPPGTPIRVFKNLRVCG 530
>gi|339634214|ref|YP_004725855.1| Holliday junction resolvase-like protein [Weissella koreensis KACC
15510]
gi|420161851|ref|ZP_14668613.1| crossover junction endodeoxyribonuclease [Weissella koreensis KCTC
3621]
gi|338854010|gb|AEJ23176.1| Holliday junction resolvase-like protein [Weissella koreensis KACC
15510]
gi|394744858|gb|EJF33777.1| crossover junction endodeoxyribonuclease [Weissella koreensis KCTC
3621]
Length = 152
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 13/66 (19%)
Query: 265 MTIVALDVGKKYTGVAV-----WH-QGMEDI---EAESTFFMEDMEEQMLNIKEKFEPVG 315
M+I LDVG K GVAV W QG+E I E E F +E M+E +L K +P G
Sbjct: 1 MSIFGLDVGSKTVGVAVSDPMGWTAQGLEIIRINEDEEEFGIERMKELVL----KHKPTG 56
Query: 316 FVVGFP 321
F++G P
Sbjct: 57 FLLGLP 62
>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
Length = 844
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVD-YIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRT 553
+ISG++ NG+ +EA+ ++ M + I AN+ T + + AC LR+G +LH + L+
Sbjct: 339 IISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN 398
Query: 554 GLH 556
GL+
Sbjct: 399 GLY 401
>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 919
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554
+ISG + G ALG+F M++ + + TI L +AC A DLRKG +LH L+ G
Sbjct: 215 LISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAG 274
Query: 555 L 555
+
Sbjct: 275 M 275
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 553 TGLHHTEMKAVALGLISLPDGMPVRVIRSARMC 585
T H+E AVA GL+SLP MP+RVI++ R+C
Sbjct: 847 TAFVHSEKLAVAFGLMSLPSCMPLRVIKNLRVC 879
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTG 554
+ISGF+ +G Y EAL +F M + N FT + SA D+++G ++H + ++TG
Sbjct: 518 LISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTG 577
Query: 555 LHHTEMKAVALGLISL 570
+T ++ LISL
Sbjct: 578 --YTSETEISNALISL 591
>gi|297846982|ref|XP_002891372.1| hypothetical protein ARALYDRAFT_473903 [Arabidopsis lyrata subsp.
lyrata]
gi|297337214|gb|EFH67631.1| hypothetical protein ARALYDRAFT_473903 [Arabidopsis lyrata subsp.
lyrata]
Length = 415
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+HH+E A+A GLI+ P G +RV+++ R+CG
Sbjct: 345 MHHSERLAIAFGLINTPPGTTIRVMKNLRICG 376
>gi|449438679|ref|XP_004137115.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15690-like [Cucumis sativus]
Length = 688
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E A+A GLIS P P+R+I++ R+CG
Sbjct: 618 LYHSERLAIAYGLISTPARTPLRIIKNLRICG 649
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 465 LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN 524
LF D I R V+W+S+ ISG+ NG EAL LF M+V+ E +
Sbjct: 219 LFDDMITRTS-VSWNSM---------------ISGYVRNGKLMEALELFNKMQVEGFEVS 262
Query: 525 EFT-IDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALGLI 568
EFT + L +AC L+ G +H R +H E+ + + I
Sbjct: 263 EFTMVSLLNACAHLGALQHGKWVHDYIKR---NHFELNVIVVTAI 304
>gi|224056897|ref|XP_002299078.1| predicted protein [Populus trichocarpa]
gi|222846336|gb|EEE83883.1| predicted protein [Populus trichocarpa]
Length = 488
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 16/83 (19%)
Query: 466 FLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANE 525
D + D +WS+L I+G++ NG + EAL LFQ M V +I NE
Sbjct: 179 MFDDMAAKDAASWSAL---------------ITGYTKNGMHTEALALFQDMMVSHILPNE 223
Query: 526 FT-IDLCSACLAGDDLRKGGELH 547
+ L SAC L +G +H
Sbjct: 224 AALVSLLSACGQLGTLHQGRWIH 246
>gi|147862347|emb|CAN84022.1| hypothetical protein VITISV_004991 [Vitis vinifera]
Length = 566
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 19/131 (14%)
Query: 429 PDDKFIARLWAARRDVINGVVS---IGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVH 485
P + A L A+R D+ +S +G Y ++ L L+ + P++ A++
Sbjct: 42 PGKQVHAMLLASRIDMNILSMSSKLVGMYASCGDLQSARLVLERTQNPNVFAFN------ 95
Query: 486 EEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTIDLC-SACLAGDDLRKGG 544
W ++S + +G++ EA+G F M+ I AN+FT + C+ D KG
Sbjct: 96 --W-------MVSALAFHGYHEEAIGYFSLMQELGIVANKFTFSIVLKQCVGLMDFNKGK 146
Query: 545 ELHHKTLRTGL 555
E+H RTGL
Sbjct: 147 EVHCVISRTGL 157
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 16/94 (17%)
Query: 473 PDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLC 531
PDLV W+++ ISGF+ + EA LFQ M V I+ N+ T+ L
Sbjct: 260 PDLVTWNAM---------------ISGFTQSLKAVEAWRLFQDMXVAGIKPNQVTVTGLL 304
Query: 532 SACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
AC + +G ELH R G A AL
Sbjct: 305 PACGLMGSIHRGKELHGLIYRMGXDMNVFVATAL 338
>gi|356534396|ref|XP_003535741.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g04780-like [Glycine max]
Length = 632
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+ GL+ LP +P+R+I++ R+CG
Sbjct: 563 HHSEKLAITFGLVCLPTEIPIRIIKNLRICG 593
>gi|255545144|ref|XP_002513633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547541|gb|EEF49036.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 777
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTG 554
+ISG + N + EA+ F M + + A+ FT + + S C++ L G ++H + +RTG
Sbjct: 292 IISGLAQNMKFQEAVAAFHKMEISGVSASNFTYLSMLSVCISILSLDLGRQIHSRVIRTG 351
Query: 555 L 555
L
Sbjct: 352 L 352
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 19/69 (27%)
Query: 469 GIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI 528
GIK P++++W+SL I+GF+ +G+ ++L LF MR ++ N FT+
Sbjct: 382 GIKSPNVISWTSL---------------IAGFAEHGFQQDSLNLFMEMRTVGVQPNSFTL 426
Query: 529 DL----CSA 533
+ CSA
Sbjct: 427 SIVLRVCSA 435
>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 496 VISGFSLNGWYAEALGLFQTMRV--DYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLR 552
+IS FSL G EA L Q M++ + ++ANE TI ++ ACL LR ELH + R
Sbjct: 320 MISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFR 379
Query: 553 TGLHHTEM 560
H E+
Sbjct: 380 HCFQHVEL 387
>gi|414867813|tpg|DAA46370.1| TPA: hypothetical protein ZEAMMB73_198598 [Zea mays]
Length = 529
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFTIDLC-SACLAGDDLRKGGELHHKTLRTG 554
+I G++ +G +AL +FQ M + ++ ++ T+ C SAC A L G ++H LR G
Sbjct: 296 LIEGYACHGQPMDALNMFQHMMKEGLQPDQITLGCCLSACAAMRSLNLGQQIHGMLLRCG 355
Query: 555 LHHTEMKAVAL 565
+ M A+
Sbjct: 356 FDRSVMIVTAI 366
>gi|358357194|gb|AEU08437.1| pentatricopeptide repeat protein [Takakia lepidozioides]
Length = 152
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLIS G P+RVI++ R+CG
Sbjct: 90 HHSEKLAIAFGLISTAPGTPLRVIKNLRVCG 120
>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 919
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 553 TGLHHTEMKAVALGLISLPDGMPVRVIRSARMC 585
T H+E AVA GL+SLP MP+RVI++ R+C
Sbjct: 847 TAFVHSEKLAVAFGLMSLPPSMPLRVIKNLRVC 879
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 103/246 (41%), Gaps = 30/246 (12%)
Query: 335 QAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAKRVKKFVE-KDAKNWSGPGSYPSTK 393
Q H+ + + +S G+ I + ++YG A+R+ + +E KD +W+ +
Sbjct: 366 QIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDK-ARRILEVLEAKDVVSWTSMIAGYVQH 424
Query: 394 SFHTNRLQAKRQLRRFISDVDSSYLPP--EGCPNYKP--PDDKFIARLW----AARRDVI 445
F L+ + ++ F D+ L C K + +R++ +A +
Sbjct: 425 EFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIW 484
Query: 446 NGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGW 505
N +V++ Y + I+ D + W+ + +SGF+ +G
Sbjct: 485 NALVNL--YARCGRSKEAFSLFEAIEHKDKITWNGM---------------VSGFAQSGL 527
Query: 506 YAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVA 564
Y EAL +F M ++ N FT + SA D+++G ++H ++TG T VA
Sbjct: 528 YEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGC--TSETEVA 585
Query: 565 LGLISL 570
LISL
Sbjct: 586 NALISL 591
>gi|302141901|emb|CBI19104.3| unnamed protein product [Vitis vinifera]
Length = 457
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 25/109 (22%)
Query: 441 RRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGF 500
+ DV G +G Y EIL DG+K+ + V W+S +I+G+
Sbjct: 296 KEDVFIGTSLVGMYAKCGEILDSRKVFDGMKKRNTVTWTS---------------IIAGY 340
Query: 501 SLNGWYAEALGLFQTMRVDYIEANEFTIDLCSACLAGDDLRKGGELHHK 549
+ NG EA+ LF+ EFT S+C ++ LH K
Sbjct: 341 ARNGQGEEAISLFR----------EFTDGKGSSCTDHEEFHAKQHLHRK 379
>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
Length = 802
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 19/139 (13%)
Query: 444 VINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLS-------------VHEEWAS 490
V N +V++ Y I V D +K D+V+W+++LS V EE
Sbjct: 335 VNNALVTL--YSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPY 392
Query: 491 RRVV---LVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGEL 546
+ + +++SG+ G+ +AL LF MR + ++ ++T SAC L+ G +L
Sbjct: 393 KNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQL 452
Query: 547 HHKTLRTGLHHTEMKAVAL 565
H ++ G + AL
Sbjct: 453 HGHLVQLGFEGSNSAGNAL 471
>gi|226505522|ref|NP_001145034.1| uncharacterized protein LOC100278213 [Zea mays]
gi|195650169|gb|ACG44552.1| hypothetical protein [Zea mays]
Length = 306
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 552 RTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
R ++H+E A+A GL+S P G P+RV+++ R+CG
Sbjct: 233 RALMYHSERLAIAFGLVSTPPGTPLRVMKNLRICG 267
>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
Length = 816
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554
+ISGF LNG AEAL +F MR + + TI L C+ DD+ G +H ++ G
Sbjct: 211 MISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLG 270
Query: 555 L 555
L
Sbjct: 271 L 271
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Query: 447 GVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWY 506
G I Y E++ DG+ D + W++ IS ++ NG
Sbjct: 257 GSALISMYSKCGELVSSRRIFDGMPSRDFITWNA---------------AISAYAQNGMA 301
Query: 507 AEALGLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
EA+ LF +M+ + ++ N+ T+ + SAC + L G ++ GL H A AL
Sbjct: 302 DEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATAL 361
>gi|413932955|gb|AFW67506.1| pentatricopeptide repeat (PPR) superfamily protein [Zea mays]
Length = 304
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 552 RTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
R ++H+E A+A GL+S P G P+RV+++ R+CG
Sbjct: 231 RALMYHSERLAIAFGLVSTPPGTPLRVMKNLRICG 265
>gi|242063508|ref|XP_002453043.1| hypothetical protein SORBIDRAFT_04g037320 [Sorghum bicolor]
gi|241932874|gb|EES06019.1| hypothetical protein SORBIDRAFT_04g037320 [Sorghum bicolor]
Length = 578
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 25/122 (20%)
Query: 435 ARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVV 494
AR+W+ V + Y EI + D + DLVAW+ L
Sbjct: 270 ARIWS---------VMMSGYARAGEIYMARNLFDEMPNKDLVAWTVL------------- 307
Query: 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRT 553
+ G+ G EAL LF+ M +EA+E T + + SAC+ + LH + +
Sbjct: 308 --VGGYVQAGRCKEALQLFEEMEATGLEADEVTVVTVLSACVQHGAIGLAKRLHRRVNQN 365
Query: 554 GL 555
GL
Sbjct: 366 GL 367
>gi|190612785|gb|ACE80770.1| pentatricopeptide repeat protein [Ptilidium pulcherrimum]
Length = 152
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLIS P G P+R+ + R+CG
Sbjct: 90 HHSEKLAIAFGLISTPAGTPLRIFNNLRVCG 120
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554
+I G+ NG EAL LF+ M+++ I+ + F++ + S+C++ D +KG ELH+ +R
Sbjct: 551 MIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNT 610
Query: 555 LHHTEMKAVAL 565
+ + V L
Sbjct: 611 MEEEGILQVVL 621
>gi|326798192|ref|YP_004316011.1| Holliday junction resolvase [Sphingobacterium sp. 21]
gi|326548956|gb|ADZ77341.1| Holliday junction resolvase [Sphingobacterium sp. 21]
Length = 137
Score = 40.8 bits (94), Expect = 2.0, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 265 MTIVALDVGKKYTGVAVWHQGMEDIEAESTFFMEDMEEQMLNIKEKFEPVGFVVGFPVGS 324
M I+A D G K GVAV A +T +D+ E + + + FVVG P
Sbjct: 1 MRIMAFDYGTKRIGVAVTDPLQIIATALTTIHPKDVIEYLKKYVSQEQVESFVVGMP--- 57
Query: 325 PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSK 366
+ D S HVK F++ L +F MPI ++E TSK
Sbjct: 58 KQLDGSDSQSAVHVKGFINLLKK--SFPQMPIVTMDERFTSK 97
>gi|190612767|gb|ACE80761.1| pentatricopeptide repeat protein [Pellia epiphylla]
Length = 152
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GL++ P G P+R+ +S R+CG
Sbjct: 90 HHSEKLAIAFGLMNTPPGTPLRIFKSLRVCG 120
>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
Length = 989
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 450 SIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEA 509
S+ YVC A LV L + P+ V+ + S + +ISG + G+ A
Sbjct: 245 SLETYVCNA--LVTLYS----RMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGA 298
Query: 510 LGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
L LF M+ DY++ + T+ L SAC + L KG +LH ++ G+
Sbjct: 299 LELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGI 345
>gi|449457630|ref|XP_004146551.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
mitochondrial-like [Cucumis sativus]
gi|449529896|ref|XP_004171934.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
mitochondrial-like [Cucumis sativus]
Length = 544
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 20/77 (25%)
Query: 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTIDLCS- 532
D+VAW+SLLS F G EAL +F+ M+ + +E +EFT LCS
Sbjct: 157 DVVAWNSLLS---------------SFLREGLAEEALNVFEEMKREKVEFSEFT--LCSV 199
Query: 533 --ACLAGDDLRKGGELH 547
AC A +D R G ++H
Sbjct: 200 LKACAALEDYRLGKQVH 216
>gi|358357158|gb|AEU08419.1| pentatricopeptide repeat protein [Atrichum undulatum]
Length = 152
Score = 40.8 bits (94), Expect = 2.1, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 552 RTGLHHTEMKAVALGLISLPDGMPVRVIRSARMC 585
R H+E A+A GLI +PDG P+RV ++ R+C
Sbjct: 86 RALFSHSEKLAIAYGLIRIPDGKPIRVYKNLRVC 119
>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
Length = 1321
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMC 585
L+H+E AV GL+SLP G P+RV+++ R+C
Sbjct: 719 LYHSEKLAVCFGLLSLPPGKPIRVLKNLRVC 749
>gi|269837589|ref|YP_003319817.1| Holliday junction resolvase YqgF [Sphaerobacter thermophilus DSM
20745]
gi|269786852|gb|ACZ38995.1| Holliday junction resolvase YqgF [Sphaerobacter thermophilus DSM
20745]
Length = 143
Score = 40.8 bits (94), Expect = 2.2, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 267 IVALDVGKKYTGVAVWHQ-GMEDIEAESTFFMEDMEEQMLNIKEKFEPVGFVVGFPVGSP 325
++ALDVG + GVAV + G+ ES D ++++ + E+++P ++G P+G
Sbjct: 11 LIALDVGARRVGVAVSDELGLIASPVESVDMKRDGMDRLVALIERYDPERIIIGLPLGMS 70
Query: 326 EKDTPKQFSQAHVKAFLSKL 345
++ P+ A +AF +L
Sbjct: 71 GREGPQ---AAATRAFAQQL 87
>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g34160-like [Vitis vinifera]
Length = 573
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E AVA GLIS +G P+RV ++ R+CG
Sbjct: 504 HHSEKLAVAFGLISTSEGTPIRVNKNLRICG 534
>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
Length = 638
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 17/127 (13%)
Query: 441 RRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGF 500
+RDVI+ I Y + +I V D + D+VA+++ +++G+
Sbjct: 284 KRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDVVAFNT---------------IMAGY 328
Query: 501 SLNGWYAEALGLFQTM-RVDYIEANEFTIDLC-SACLAGDDLRKGGELHHKTLRTGLHHT 558
+ NG+Y EAL +F M R + +E T+ + SA + K +H+ L G+ T
Sbjct: 329 AQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAASMHNYFLENGISVT 388
Query: 559 EMKAVAL 565
AVAL
Sbjct: 389 GKVAVAL 395
>gi|242081959|ref|XP_002445748.1| hypothetical protein SORBIDRAFT_07g025050 [Sorghum bicolor]
gi|241942098|gb|EES15243.1| hypothetical protein SORBIDRAFT_07g025050 [Sorghum bicolor]
Length = 760
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 451 IGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEAL 510
+ YV A+ L DG+ R D+V W++L I+G++ G AL
Sbjct: 17 LAAYVRCADTRSARLLFDGMPRRDVVTWNTL---------------IAGYATQGSARSAL 61
Query: 511 GLFQTMRVD-YIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHT 558
G F+ R D + + FT + +AC D R G H + +GL T
Sbjct: 62 GAFRDARRDGAVAVDRFTYAAVLAACGGAGDWRSGRAAHGLAVVSGLART 111
>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
Length = 787
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 16/84 (19%)
Query: 471 KRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-ID 529
+R D+V+W+S +IS +SLNG EALGLF+ M+ + AN +T +
Sbjct: 73 ERNDVVSWNS---------------IISAYSLNGQCMEALGLFREMQKAGVGANTYTLVA 117
Query: 530 LCSACLAGDDLRKGGELHHKTLRT 553
AC + G E+H L++
Sbjct: 118 ALQACEDSSFKKLGMEIHAAILKS 141
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 21/188 (11%)
Query: 374 KFVEKDAKNWSGPGSYPSTKSFHTNRLQAKRQLRRFISDVD-----SSYLPPEGCPNYKP 428
K + KD +W+ + + + HT L+ R+++ DVD S+ L G
Sbjct: 273 KMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSH 332
Query: 429 PDDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEW 488
+ L D++ + I Y I + IK D+V+W+S+
Sbjct: 333 AKEVHGYTLKRGLSDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSM------- 385
Query: 489 ASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELH 547
IS + NG EALG+F M+ +E + T + + SA + L KG E+H
Sbjct: 386 --------ISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIH 437
Query: 548 HKTLRTGL 555
R G
Sbjct: 438 GFIFRKGF 445
>gi|449442521|ref|XP_004139030.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 1 [Cucumis sativus]
gi|449442523|ref|XP_004139031.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 2 [Cucumis sativus]
Length = 517
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 20/109 (18%)
Query: 440 ARRDVI----NGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVL 495
+R DVI G I YV + + +L I+ D+V+WS+
Sbjct: 291 SRHDVIIDGNVGNALINMYVKCGNMEMAILIFKAIEHKDIVSWST--------------- 335
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKG 543
+ISG ++NG +A LF M V + ++ T + L SAC G + +G
Sbjct: 336 IISGLAMNGLGKQAFVLFSLMLVHGVSPDDITFLGLLSACSHGGLINQG 384
>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 16/83 (19%)
Query: 472 RPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DL 530
RP++V+WS+ VI GF+ G EAL LF+ M++ ++AN TI +
Sbjct: 373 RPNVVSWSA---------------VIGGFASKGQGEEALELFRRMQLAKVKANSVTIASV 417
Query: 531 CSACLAGDDLRKGGELHHKTLRT 553
S C L G E+H +R+
Sbjct: 418 LSVCAELAALHLGREIHGHVVRS 440
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 22/137 (16%)
Query: 430 DDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWA 489
D+K + R R+++ ++ + Y E+ DG++ D+VAWS++
Sbjct: 247 DEKGLVR----NRNLMTALIDM--YAKCGELGKARRLFDGMQSRDVVAWSAM-------- 292
Query: 490 SRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHH 548
ISG++ EAL LF M++ +E N+ T + + SAC L G +H
Sbjct: 293 -------ISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHS 345
Query: 549 KTLRTGLHHTEMKAVAL 565
R L T + AL
Sbjct: 346 YIRRKRLSLTIILGTAL 362
>gi|334185093|ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g05240
gi|332640689|gb|AEE74210.1| mitochondrial editing factor 19 [Arabidopsis thaliana]
Length = 565
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 16/95 (16%)
Query: 454 YVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLF 513
Y+C E+ L + I + ++VAW SL ISGF N +++A+ F
Sbjct: 152 YMCCGEVNYGLRVFEDIPQWNVVAWGSL---------------ISGFVNNNRFSDAIEAF 196
Query: 514 QTMRVDYIEANE-FTIDLCSACLAGDDLRKGGELH 547
+ M+ + ++ANE +DL AC D+ G H
Sbjct: 197 REMQSNGVKANETIMVDLLVACGRCKDIVTGKWFH 231
>gi|218201923|gb|EEC84350.1| hypothetical protein OsI_30872 [Oryza sativa Indica Group]
Length = 122
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 557 HTEMKAVALGLISLPDGMPVRVIRSARMCG 586
H+E AVALGLIS G P+RVI++ R+CG
Sbjct: 54 HSEKLAVALGLISTSRGTPLRVIKNLRICG 83
>gi|148906116|gb|ABR16216.1| unknown [Picea sitchensis]
Length = 394
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 468 DGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT 527
D + +LV+W+++ +SG++ G+ EAL +F M+ + ++AN T
Sbjct: 172 DKMCERNLVSWTAM---------------VSGYAQGGFADEALRMFYEMQGEDVKANYVT 216
Query: 528 I-DLCSACLAGDDLRKGGELHHKTLRTGL 555
+ + AC DL++G E+H +R GL
Sbjct: 217 VASVLPACAQLSDLQQGKEIHGYIIRRGL 245
>gi|358357188|gb|AEU08434.1| pentatricopeptide repeat protein [Lejeunea cavifolia]
Length = 152
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E A+A GL+S P G P+R+ ++ R+CG
Sbjct: 89 LYHSEKLAIAFGLLSTPAGTPIRIFKNLRVCG 120
>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 802
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 19/128 (14%)
Query: 456 CVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWA----SRRVV------------LVISG 499
C + + +LF D I + DL +W++++S + +R++ VISG
Sbjct: 111 CGSLVDAQMLF-DEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISG 169
Query: 500 FSLNGWYAEALGLFQTMRV-DYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLHH 557
+ GWY EAL LF+ M+ + N FT +A A LR+G E+H +R+GL
Sbjct: 170 YVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLEL 229
Query: 558 TEMKAVAL 565
E+ AL
Sbjct: 230 DEVVWTAL 237
>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
Length = 837
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 16/90 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
D +K D+V+W+ ++I G++ N +A GLF TM+ + I+ +
Sbjct: 321 FDKMKVRDVVSWT---------------VMIRGYAENSNIEDAFGLFATMQEEGIQPDRI 365
Query: 527 T-IDLCSACLAGDDLRKGGELHHKTLRTGL 555
T I + +AC + DL E+H + +R G
Sbjct: 366 TYIHIINACASSADLSLAREIHSQVVRAGF 395
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E A+A G++SLP G P+R+ ++ R+CG
Sbjct: 768 YHSEKLAIAYGVLSLPSGAPIRIFKNLRVCG 798
>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
[Vitis vinifera]
Length = 1058
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E AV G++S P+G P+++I++ R+CG
Sbjct: 988 LYHSEKLAVVFGILSTPNGSPIQIIKNLRICG 1019
>gi|5050911|emb|CAB45019.1| PCMP-H2 [Arabidopsis thaliana]
Length = 287
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E AVA GL+ +P G P+R+I++ R+CG
Sbjct: 218 YHSEKLAVAFGLLVVPSGAPIRIIKNLRVCG 248
>gi|449519292|ref|XP_004166669.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g15690-like [Cucumis sativus]
Length = 588
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E A+A GLIS P P+R+I++ R+CG
Sbjct: 518 LYHSERLAIAYGLISTPARTPLRIIKNLRICG 549
>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
Length = 1145
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E AVA GL+ P GMP++++++ R+CG
Sbjct: 851 LYHSEKLAVAYGLLVTPKGMPIQIMKNLRICG 882
>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Glycine max]
Length = 618
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+ GL+ LP +P+R+I++ R+CG
Sbjct: 549 HHSEKLAITFGLMCLPRDIPIRIIKNLRICG 579
>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 733
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 16/102 (15%)
Query: 465 LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN 524
L GI R D+++WS+++SV +S G+ EA MR + + N
Sbjct: 382 LVFHGITRKDIISWSTIISV---------------YSQGGYAKEAFDYLSWMRREGPKPN 426
Query: 525 EFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
EF + + S C + L +G ++H L G+ H M A+
Sbjct: 427 EFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAI 468
>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
Length = 954
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 16/83 (19%)
Query: 472 RPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DL 530
RP++V+WS+ VI GF+ G EAL LF+ M++ ++AN TI +
Sbjct: 373 RPNVVSWSA---------------VIGGFASKGQGEEALELFRRMQLAKVKANSVTIASV 417
Query: 531 CSACLAGDDLRKGGELHHKTLRT 553
S C L G E+H +R+
Sbjct: 418 LSVCAELAALHLGREIHGHVVRS 440
>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 921
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E AVA GL+ P GMP++++++ R+CG
Sbjct: 851 LYHSEKLAVAYGLLVTPKGMPIQIMKNLRICG 882
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Query: 447 GVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWY 506
G I Y E++ DG+ D + W++ IS ++ NG
Sbjct: 257 GSALISMYSKCGELVSSRRIFDGMPSRDFITWNA---------------AISAYAQNGMA 301
Query: 507 AEALGLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
EA+ LF +M+ + ++ N+ T+ + SAC + L G ++ GL H A AL
Sbjct: 302 DEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATAL 361
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 18/94 (19%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFS 501
R V N +V + Y +L+ L D I DLV+W+ ++I+G+
Sbjct: 534 RHVANSLVDM--YAKCGALLLARLLFDDITSKDLVSWT---------------VMIAGYG 576
Query: 502 LNGWYAEALGLFQTMRVDYIEANEFT-IDLCSAC 534
++G+ EA+ LF MR IE +E + + L AC
Sbjct: 577 MHGFGKEAIALFNQMRQAGIEPDEISFVSLLYAC 610
>gi|449493040|ref|XP_004159175.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g18840-like [Cucumis sativus]
Length = 1096
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 17/100 (17%)
Query: 458 AEILVML-LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTM 516
EI V L LF +++ D+VAW+++ ISGF NG+ E+L LF M
Sbjct: 627 GEIDVALDLFWKELEQNDVVAWNTM---------------ISGFVQNGYEEESLKLFVRM 671
Query: 517 RVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
+ + NE T + SAC L+ G E+H L+ L
Sbjct: 672 ADEKVGWNEHTFASVLSACSNLRSLKLGKEVHAYVLKNRL 711
>gi|449461160|ref|XP_004148310.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g18840-like [Cucumis
sativus]
Length = 1096
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 17/100 (17%)
Query: 458 AEILVML-LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTM 516
EI V L LF +++ D+VAW+++ ISGF NG+ E+L LF M
Sbjct: 627 GEIDVALDLFWKELEQNDVVAWNTM---------------ISGFVQNGYEEESLKLFVRM 671
Query: 517 RVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
+ + NE T + SAC L+ G E+H L+ L
Sbjct: 672 ADEKVGWNEHTFASVLSACSNLRSLKLGKEVHAYVLKNRL 711
>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 990
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 552 RTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
R +H+E AVA GL+S P P+RVI++ R+CG
Sbjct: 917 RALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCG 951
>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
Length = 851
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 26/31 (83%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E +AVA GL+ +P+ +P+RV+++ R+CG
Sbjct: 637 YHSERQAVAYGLLKIPEELPIRVMKNLRVCG 667
>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 708
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 16/87 (18%)
Query: 470 IKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI- 528
+++PDLV W+S+ I+G+ NG +AL L+ M+++ I NE T+
Sbjct: 374 LQQPDLVLWTSM---------------IAGYVQNGENEDALSLYCRMQMEGILPNELTMA 418
Query: 529 DLCSACLAGDDLRKGGELHHKTLRTGL 555
+ AC +G ++H +T++ GL
Sbjct: 419 SVLKACSNLAAFDQGRQIHARTIKYGL 445
>gi|190612833|gb|ACE80794.1| pentatricopeptide repeat protein [Psilotum nudum]
Length = 152
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLI+ P G PV ++++ R+CG
Sbjct: 90 HHSEKLAIAFGLITTPAGTPVHIMKNLRVCG 120
>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
1
gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 684
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GL+SLP +P+R+ ++ R+CG
Sbjct: 615 HHSEKLALAFGLLSLPLSVPIRITKNLRICG 645
>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E AVA GL+++P G P+R+ ++ R+CG
Sbjct: 445 YHSEKLAVAFGLLTVPQGAPIRIFKNLRVCG 475
>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
Length = 634
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GL+SLP +P+R+ ++ R+CG
Sbjct: 565 HHSEKLALAFGLLSLPLSVPIRITKNLRICG 595
>gi|2244842|emb|CAB10264.1| hypothetical protein [Arabidopsis thaliana]
gi|7268231|emb|CAB78527.1| hypothetical protein [Arabidopsis thaliana]
Length = 587
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GL+SLP +P+R+ ++ R+CG
Sbjct: 518 HHSEKLALAFGLLSLPLSVPIRITKNLRICG 548
>gi|255569325|ref|XP_002525630.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535066|gb|EEF36748.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 765
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 16/88 (18%)
Query: 470 IKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-I 528
I+ D+V+W+S+ I GF L G +AL LFQ M+ + + N+ T +
Sbjct: 193 IEEKDVVSWNSM---------------IKGFVLGGCPDKALELFQLMKAENVRPNDVTMV 237
Query: 529 DLCSACLAGDDLRKGGELHHKTLRTGLH 556
+ SAC DL G + H R G++
Sbjct: 238 GVLSACAKKMDLEFGRRVCHYIERNGIN 265
>gi|357115222|ref|XP_003559390.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Brachypodium distachyon]
Length = 306
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
++H+E A+A GL+S P G P+RV+++ R+CG
Sbjct: 236 MYHSERLAIAFGLVSTPPGTPLRVMKNLRICG 267
>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 557 HTEMKAVALGLISLPDGMPVRVIRSARMC 585
H+E A+ALGLIS P G P+R++++ R+C
Sbjct: 521 HSEKLAIALGLISTPSGSPIRIVKNLRVC 549
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 16/91 (17%)
Query: 466 FLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANE 525
D + D+V+WSS+ ISG++ N + E L LFQ M++ + +E
Sbjct: 464 IFDSMPEKDVVSWSSM---------------ISGYAQNDLFDETLALFQEMQMSGFKPDE 508
Query: 526 FT-IDLCSACLAGDDLRKGGELHHKTLRTGL 555
T + + SAC L +G +H R GL
Sbjct: 509 TTLVSVISACARLAALEQGKWVHAYIKRNGL 539
>gi|296090396|emb|CBI40215.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E AV G++S P+G P+++I++ R+CG
Sbjct: 583 LYHSEKLAVVFGILSTPNGSPIQIIKNLRICG 614
>gi|225450928|ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
[Vitis vinifera]
Length = 656
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 453 EYVCVAEILVMLLFLDGIKRPDLVAWSSLLS------------VHEEWASRRVVL---VI 497
E+ V++++ L+FL G +R V + + S V +E + + VV VI
Sbjct: 170 EFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVI 229
Query: 498 SGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLH 556
SG S +Y E+L LF MR ++ N T + AC +R+G ++H + G+H
Sbjct: 230 SGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVH 289
>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 3/43 (6%)
Query: 544 GELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
G+ ++T+R +H+E A+A GLI+ P P+RV+++ R+CG
Sbjct: 510 GDEKNQTIR---YHSERLAIAFGLITFPADRPIRVMKNLRVCG 549
>gi|302800080|ref|XP_002981798.1| hypothetical protein SELMODRAFT_115031 [Selaginella moellendorffii]
gi|300150630|gb|EFJ17280.1| hypothetical protein SELMODRAFT_115031 [Selaginella moellendorffii]
Length = 483
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
+H+E +A+A GLIS P G P+RV+++ R+C
Sbjct: 414 YHSEKQAMAFGLISTPSGTPLRVVKNLRVC 443
>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
Length = 745
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRT 553
+++GF+ NG +EAL +F+ MR I +++T + +AC A L +G ++H +RT
Sbjct: 243 MVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRT 301
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
HH+E A+A GLI +P MP+R++++ R+C
Sbjct: 676 HHSEKLAIAFGLIFVPQEMPIRIVKNLRVC 705
>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 997
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 552 RTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
R +H+E AVA GL+S P P+RVI++ R+CG
Sbjct: 924 RALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCG 958
>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
Length = 695
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 23/125 (18%)
Query: 435 ARLWAARRDVINGVVSIG---EYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASR 491
AR W D+ N +V YV I D + R D+VAWS++
Sbjct: 328 ARAWIREEDLQNVIVHTALMEMYVKCRAIDEARHEFDRMPRRDVVAWSTM---------- 377
Query: 492 RVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSAC--LAGDDLRK--GGEL 546
I+G+S NG E+L LF+ M+ + NE T + + SAC L D+L + G +
Sbjct: 378 -----IAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYI 432
Query: 547 HHKTL 551
+TL
Sbjct: 433 ESQTL 437
>gi|225428796|ref|XP_002285135.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15690
[Vitis vinifera]
Length = 593
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E A+A GLIS P P+R+I++ R+CG
Sbjct: 523 LYHSERLAIAYGLISTPARTPLRIIKNLRVCG 554
>gi|302768253|ref|XP_002967546.1| hypothetical protein SELMODRAFT_88678 [Selaginella moellendorffii]
gi|300164284|gb|EFJ30893.1| hypothetical protein SELMODRAFT_88678 [Selaginella moellendorffii]
Length = 281
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
+H+E +A+A GLIS P G P+RV+++ R+C
Sbjct: 212 YHSEKQAMAFGLISTPSGTPLRVVKNLRVC 241
>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
Length = 485
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 557 HTEMKAVALGLISLPDGMPVRVIRSARMC 585
H+E A+ALGLIS P G P+R++++ R+C
Sbjct: 417 HSEKLAIALGLISTPSGSPIRIVKNLRVC 445
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 16/79 (20%)
Query: 470 IKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-I 528
I+ D+++W+S+LS G + +G++ E+L LF+ M++ IE +E T +
Sbjct: 72 IREKDVLSWTSMLS---------------GLAKSGYFQESLALFRKMQLHKIEPDEITLV 116
Query: 529 DLCSACLAGDDLRKGGELH 547
+ SAC L +G +H
Sbjct: 117 GVLSACAQTGALDQGKYIH 135
>gi|254468380|ref|ZP_05081786.1| conserved hypothetical protein TIGR00250 [beta proteobacterium
KB13]
gi|207087190|gb|EDZ64473.1| conserved hypothetical protein TIGR00250 [beta proteobacterium
KB13]
Length = 161
Score = 40.4 bits (93), Expect = 2.8, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Query: 266 TIVALDVGKKYTGVAVWHQGMEDIEAESTFFMEDMEEQMLNIKE---KFEPVGFVVGFPV 322
+++A D+G K TGVAV + ++ TF+ ++ +++ IK+ +++P+ V+G P
Sbjct: 18 SVLAFDLGIKKTGVAVGNNVLKTSRNLVTFYSKNKNQRIEKIKQLVNEWQPIYLVLGLP- 76
Query: 323 GSPEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAKRVKKFVEKDAKN 382
+D+ + K L+ + +PI VNE +S + + +K K KN
Sbjct: 77 --SNRDSS---ANETTKFCLNTAKEIEKNINLPIFFVNENYSSTSAEELIKDLGNKKQKN 131
>gi|255549182|ref|XP_002515645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545188|gb|EEF46697.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 758
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
Query: 432 KFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASR 491
+F R + +I G +IG+ V A+ + + G+KR + ++W+S+
Sbjct: 207 RFSLRNEVSYNTMIVGYCAIGD-VSKAKEFFDQMEVSGVKR-ERISWNSM---------- 254
Query: 492 RVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKT 550
ISG+ N + EAL +F+ + + IE + FT+ + +AC LR+G E+H
Sbjct: 255 -----ISGYVDNFMFDEALNMFRNLLKEGIEPDSFTLGSVLTACADTASLRQGKEIHSYA 309
Query: 551 LRTGLHHTEMKAVAL 565
+ L AL
Sbjct: 310 IVKSLQSNTFVGGAL 324
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 16/101 (15%)
Query: 466 FLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANE 525
D + ++V+W+++ + GFS NG +AL +F M + + N
Sbjct: 303 LFDQMPEKNVVSWTTM---------------VDGFSRNGDSEKALSMFSKMLEEGVRPNA 347
Query: 526 FTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
FTI SAC L G +H GLH TE AL
Sbjct: 348 FTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTAL 388
>gi|297846216|ref|XP_002890989.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297336831|gb|EFH67248.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 792
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLL-------SVHE------EW 488
RD ++ I Y+ + L + + ++V W+S++ VHE E
Sbjct: 228 RDAVSWNAMIKGYIENGGMEEAKLLFENMSEKNVVTWTSMVYGYCRYGDVHEAYRLFCEM 287
Query: 489 ASRRVV---LVISGFSLNGWYAEALGLFQTMR--VDYIEAN-EFTIDLCSACLA-GDDLR 541
R VV +ISGF+ N +Y EAL LF M+ VD I N E I L AC G R
Sbjct: 288 PERNVVSWTAMISGFAWNEFYREALMLFLEMKKDVDAISPNGETLISLAYACGGLGVGFR 347
Query: 542 KGGE-LHHKTLRTG 554
+ GE LH + + G
Sbjct: 348 RLGEQLHAQVISNG 361
>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
Length = 673
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 549 KTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMC 585
K + ++H+E AV GL++ P G P+RVI+S MC
Sbjct: 594 KAFSSAVYHSEKLAVTFGLLNTPIGAPIRVIKSVTMC 630
>gi|356521500|ref|XP_003529393.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15690-like [Glycine max]
Length = 588
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E A+A GLIS P P+R+I++ R+CG
Sbjct: 518 LYHSERLAIAYGLISTPPRTPLRIIKNLRVCG 549
>gi|147834943|emb|CAN70199.1| hypothetical protein VITISV_021220 [Vitis vinifera]
Length = 627
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E A+A GLIS P P+R+I++ R+CG
Sbjct: 557 LYHSERLAIAYGLISTPARTPLRIIKNLRVCG 588
>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Glycine max]
Length = 722
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 552 RTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
R L+H+E AVA GLIS +G+P+ V+++ R+CG
Sbjct: 649 RRLLYHSEKLAVAFGLISTEEGVPILVVKNLRICG 683
>gi|15237212|ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g52630
gi|8953718|dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332008860|gb|AED96243.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
Length = 588
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 3/43 (6%)
Query: 544 GELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
G+ ++T+R +H+E A+A GLI+ P P+RV+++ R+CG
Sbjct: 510 GDEKNQTIR---YHSERLAIAFGLITFPADRPIRVMKNLRVCG 549
>gi|358357232|gb|AEU08456.1| pentatricopeptide repeat protein [Takakia lepidozioides]
Length = 152
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLIS G P+RVI++ R+CG
Sbjct: 90 HHSEKLAIAFGLISTSPGSPLRVIKNLRVCG 120
>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 24/138 (17%)
Query: 431 DKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWAS 490
DK I R A+ +I G + GE + VAE L + ++ ++V+W+++
Sbjct: 166 DKMIVRDMASWNALIAGYMKEGE-IGVAEDL-----FERMEHRNIVSWTAM--------- 210
Query: 491 RRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTIDLCS---ACLAGDDLRKGGELH 547
ISG++ NG+ +ALGLF M D E + + S AC L +G +H
Sbjct: 211 ------ISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIH 264
Query: 548 HKTLRTGLHHTEMKAVAL 565
GLH AL
Sbjct: 265 DFANGIGLHLNSSVQTAL 282
>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
Length = 370
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A G+IS P G +RV+++ R+CG
Sbjct: 301 HHSEKLAIAFGIISTPPGTTIRVVKNLRVCG 331
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
+H+E AVA G++S+P G P+RVI++ R+C
Sbjct: 707 YHSEKLAVAFGILSIPPGRPIRVIKNLRVC 736
>gi|5668803|gb|AAD46029.1|AC007519_14 F16N3.14 [Arabidopsis thaliana]
Length = 571
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+HH+E A+A G+I+ P G +RV+++ R+CG
Sbjct: 501 MHHSERLAIAFGIINTPPGTTIRVMKNLRICG 532
>gi|296083546|emb|CBI23541.3| unnamed protein product [Vitis vinifera]
Length = 385
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L H+E A+A GLI +P G P+RV ++ R+CG
Sbjct: 315 LRHSEKLAIAYGLIRMPLGTPIRVFKNLRVCG 346
>gi|357475405|ref|XP_003607988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509043|gb|AES90185.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 565
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E A+A GLIS P P+R+I++ R+CG
Sbjct: 495 LYHSERLAIAYGLISTPPRTPLRIIKNLRVCG 526
>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
Length = 440
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E AVA GL+++P G P+R+ ++ R+CG
Sbjct: 371 YHSEKLAVAFGLLTMPPGAPIRIFKNLRICG 401
>gi|388508872|gb|AFK42502.1| unknown [Medicago truncatula]
Length = 565
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E A+A GLIS P P+R+I++ R+CG
Sbjct: 495 LYHSERLAIAYGLISTPPRTPLRIIKNLRVCG 526
>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 833
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 16/109 (14%)
Query: 470 IKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI 528
+K D+VAW S VISGF N Y EAL F+ M D ++ + +
Sbjct: 403 MKERDVVAWGS---------------VISGFCQNRKYKEALDFFRAMEADLVKPDSDIMA 447
Query: 529 DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALGLISLPDGMPVR 577
+ SAC + + G +H +++GL A +L + G P R
Sbjct: 448 SIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPER 496
>gi|255570455|ref|XP_002526186.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534490|gb|EEF36190.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 446
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 17/103 (16%)
Query: 466 FLDGIKRPDLVAWSSLLSVH-------------EEWASRRVV---LVISGFSLNGWYAEA 509
D + D+ +W+++LS++ ++ SR V VI+GF+ NG +A
Sbjct: 81 LFDKMSYRDIFSWNAMLSLYAKAGLVEDLRVVFDDMPSRDSVSYNTVITGFAKNGRAGKA 140
Query: 510 LGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTL 551
+ F M+ + + E+T + + +AC DLRKG ++H + L
Sbjct: 141 VEAFVRMQTEGFKPTEYTHVSVLNACTQLLDLRKGKQIHGRIL 183
>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 823
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVD-YIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRT 553
+ISG++ NG+ +EA+ ++ M + I AN+ T + + AC LR+G +LH + L+
Sbjct: 421 IISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN 480
Query: 554 GLH 556
GL+
Sbjct: 481 GLY 483
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
+H+E AVA G++S+P G P+RVI++ R+C
Sbjct: 707 YHSEKLAVAFGILSIPPGRPIRVIKNLRVC 736
>gi|449467189|ref|XP_004151307.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
mitochondrial-like [Cucumis sativus]
Length = 711
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 17/129 (13%)
Query: 444 VINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLS-------------VHEEWAS 490
+++ V I Y V + + DG+ D+V+WSS++S + ++
Sbjct: 169 IVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKMPD 228
Query: 491 RRVV---LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGGEL 546
R VV L+I G+ + + LF MR + +E N T+ L AC + D +G ++
Sbjct: 229 RNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLEACGSFDRYGEGIQI 288
Query: 547 HHKTLRTGL 555
H L G
Sbjct: 289 HGLVLSLGF 297
>gi|18481717|gb|AAL73539.1|AF466200_18 hypothetical protein S250_18C08.29 [Sorghum bicolor]
Length = 679
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 17/131 (12%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLS-------------VHEEW 488
RD + I Y+ E+ + L DG+ D+++WS+++ + E
Sbjct: 165 RDPVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGTVSEARRLFEAM 224
Query: 489 ASRRVV---LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTIDLC-SACLAGDDLRKGG 544
R VV +I G+ +G Y + L LF MR + ++ N T+ + C + +G
Sbjct: 225 PERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLDGCAQASLVDEGS 284
Query: 545 ELHHKTLRTGL 555
++H +R G
Sbjct: 285 QVHCLMIRMGF 295
>gi|255568940|ref|XP_002525440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535253|gb|EEF36930.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 878
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554
+ISG S G AL LF+ M++D+++ + T+ L SAC + L KG +LH ++ G
Sbjct: 362 LISGLSQQGCSDRALELFKKMQLDHLKPDCVTVASLLSACASIKSLSKGEQLHSYAIKAG 421
Query: 555 L 555
+
Sbjct: 422 M 422
>gi|225438217|ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49740-like [Vitis vinifera]
Length = 729
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 16/90 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
+ + P+L++W++ +ISGF NG+ + L F + + ++ N +
Sbjct: 440 FNNMSSPNLISWNT---------------IISGFLFNGFTLQGLEQFYELLMSTLKPNAY 484
Query: 527 TIDLC-SACLAGDDLRKGGELHHKTLRTGL 555
T+ + S C + LR G ++H LR+G+
Sbjct: 485 TLSIVLSICASISALRHGKQIHGYILRSGV 514
>gi|449528931|ref|XP_004171455.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g10330-like [Cucumis
sativus]
Length = 477
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTL 551
+IS F+ NG EAL LF TM+V+ I NE T + + +AC G ++ G +L L
Sbjct: 294 MISSFASNGRETEALDLFATMKVEGIHPNEVTFVAILTACARGKLVKLGLQLFQSML 350
>gi|358357154|gb|AEU08417.1| pentatricopeptide repeat protein [Atrichum undulatum]
Length = 152
Score = 40.0 bits (92), Expect = 3.2, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 557 HTEMKAVALGLISLPDGMPVRVIRSARMC 585
H+E A+A GLI +PDG P+RV ++ R+C
Sbjct: 91 HSERLAIAYGLICIPDGKPIRVYKNLRVC 119
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 439 AARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVIS 498
++ RDV++ I Y I D I D+V+W++L IS
Sbjct: 164 SSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNAL---------------IS 208
Query: 499 GFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELH 547
G++ G Y EAL LF+ M ++ +E T + + SAC + G ++H
Sbjct: 209 GYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVH 258
>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
gi|194695290|gb|ACF81729.1| unknown [Zea mays]
Length = 539
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
HH+E A+A +SLP+G+P+RV+++ R+C
Sbjct: 470 HHSEKLAIAFAFLSLPEGVPIRVMKNLRVC 499
>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
Length = 647
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
HH+E A+A +SLP+G+P+RV+++ R+C
Sbjct: 578 HHSEKLAIAFAFLSLPEGVPIRVMKNLRVC 607
>gi|356500039|ref|XP_003518842.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15690-like [Glycine max]
Length = 591
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E A+A GLIS P P+R+I++ R+CG
Sbjct: 521 LYHSERLAIAYGLISTPPRTPLRIIKNLRVCG 552
>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 599
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L H+E A+A GLI +P G P+RV ++ R+CG
Sbjct: 529 LRHSEKLAIAYGLIRMPLGTPIRVFKNLRVCG 560
>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 858
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 16/91 (17%)
Query: 466 FLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANE 525
+D D+V+WSSLLS G+ NG+ EAL +F M + ++ NE
Sbjct: 38 LVDESSELDVVSWSSLLS---------------GYVQNGFVEEALLVFNEMCLLGVKCNE 82
Query: 526 FTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
FT + AC DL G ++H + TG
Sbjct: 83 FTFPSVLKACSMKRDLNMGRKVHGMAVVTGF 113
>gi|449453704|ref|XP_004144596.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g10330-like [Cucumis sativus]
Length = 477
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTL 551
+IS F+ NG EAL LF TM+V+ I NE T + + +AC G ++ G +L L
Sbjct: 294 MISSFASNGRETEALDLFATMKVEGIHPNEVTFVAILTACARGKLVKLGLQLFQSML 350
>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
Length = 788
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 19/129 (14%)
Query: 443 DVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWA----SRRVV---- 494
+V N ++++ Y+ + + D + D+V+W++LL V+ E +RRV+
Sbjct: 283 EVQNSLITL--YLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMP 340
Query: 495 --------LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGGE 545
+I+ G AEA+ L+ M D N + SAC + +DLR G
Sbjct: 341 ERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACASLEDLRGGAR 400
Query: 546 LHHKTLRTG 554
+H ++L+ G
Sbjct: 401 IHARSLKMG 409
>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Glycine max]
Length = 661
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 494 VLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLR 552
+ VI+GF+LNG +EAL LF+ M + +E + FT + L SA L G +H L+
Sbjct: 200 ISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLK 259
Query: 553 TGL 555
GL
Sbjct: 260 VGL 262
>gi|302764012|ref|XP_002965427.1| hypothetical protein SELMODRAFT_84339 [Selaginella moellendorffii]
gi|300166241|gb|EFJ32847.1| hypothetical protein SELMODRAFT_84339 [Selaginella moellendorffii]
Length = 495
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 85/216 (39%), Gaps = 41/216 (18%)
Query: 358 LVNEYGTSKNLAKRVKKFVE----KDAKNWSGPGSYPSTKSFHTNRLQAKRQLRR----- 408
L+N YG + + ++F E ++ +WS + + + H L +++
Sbjct: 16 LLNMYGKCGGV-EEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKMEEEGVEP 74
Query: 409 ----FISDVDSSYLPPEGCPNYKPPDDKFIARLWAARR----DVINGVVSIGEYVCVAEI 460
F+S +D+ C N + + + AAR+ +I G +G Y + +
Sbjct: 75 NEVTFLSVLDA-------CANAEAVEQGEMIHRLAARKKLDVGLIVGTALVGMYGKCSRL 127
Query: 461 LVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDY 520
+ DGI D+V WS+++S + + R EA+ LF M +D
Sbjct: 128 IEARQVFDGIVEKDVVTWSTMISAYAQLGHVR---------------EAIQLFGYMNLDG 172
Query: 521 IEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
+ NE + + AC + L +G H + G
Sbjct: 173 VRPNEIILMSILGACSSAGALAEGKMTHELVVICGF 208
>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
Length = 719
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E AVA GL+++P G P+R+ ++ R+CG
Sbjct: 650 YHSEKLAVAFGLLTMPPGAPIRIFKNLRICG 680
>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
Length = 630
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E AVA G++++P G P+RVI++ R+CG
Sbjct: 561 YHSEKLAVAYGILNIPPGRPIRVIKNLRVCG 591
>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
Length = 755
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E AVA G++++P G P+RVI++ R+CG
Sbjct: 686 YHSEKLAVAYGILNIPPGRPIRVIKNLRVCG 716
>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 755
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E AVA G++++P G P+RVI++ R+CG
Sbjct: 686 YHSEKLAVAYGILNIPPGRPIRVIKNLRVCG 716
>gi|358357200|gb|AEU08440.1| pentatricopeptide repeat protein [Takakia lepidozioides]
Length = 151
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLIS P G P+ VI++ R+CG
Sbjct: 90 HHSEKLALAFGLISTPPGTPICVIKNLRVCG 120
>gi|242080473|ref|XP_002445005.1| hypothetical protein SORBIDRAFT_07g002620 [Sorghum bicolor]
gi|241941355|gb|EES14500.1| hypothetical protein SORBIDRAFT_07g002620 [Sorghum bicolor]
Length = 679
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 17/131 (12%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLS-------------VHEEW 488
RD + I Y+ E+ + L DG+ D+++WS+++ + E
Sbjct: 165 RDPVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGTVSEARRLFEAM 224
Query: 489 ASRRVV---LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTIDLC-SACLAGDDLRKGG 544
R VV +I G+ +G Y + L LF MR + ++ N T+ + C + +G
Sbjct: 225 PERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLDGCAQASLVDEGS 284
Query: 545 ELHHKTLRTGL 555
++H +R G
Sbjct: 285 QVHCLMIRMGF 295
>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
Length = 739
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 25/31 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E AVA G++++P G P+RVI++ R+CG
Sbjct: 686 YHSEKLAVAYGILNIPPGRPIRVIKNLRVCG 716
>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Vitis vinifera]
Length = 786
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E AVA GL+++P G P+R+ ++ R+CG
Sbjct: 717 YHSEKLAVAFGLLTMPPGAPIRIFKNLRICG 747
>gi|147799187|emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]
Length = 542
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 453 EYVCVAEILVMLLFLDGIKRPDLVAWSSLLS------------VHEEWASRRVVL---VI 497
E+ V++++ L+FL G +R V + + S V +E + + VV VI
Sbjct: 56 EFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVI 115
Query: 498 SGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLH 556
SG S +Y E+L LF MR ++ N T + AC +R+G ++H + G+H
Sbjct: 116 SGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVH 175
>gi|242067895|ref|XP_002449224.1| hypothetical protein SORBIDRAFT_05g006590 [Sorghum bicolor]
gi|241935067|gb|EES08212.1| hypothetical protein SORBIDRAFT_05g006590 [Sorghum bicolor]
Length = 570
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 476 VAWSSLLSVHEEWASRRVV---LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTIDLCS 532
VA + L+ +SR VV +++G+ N ++ EAL LF TM + + NE T+
Sbjct: 172 VADAELVFAESHGSSRTVVSWTAMVAGYVQNYFFGEALALFSTMVAEGVLPNEITLISFL 231
Query: 533 ACLAGDDLRKGGELHHK-TLRTGL 555
CL G + GE+ H +R+G
Sbjct: 232 PCLQGQEWLDAGEMVHGFVIRSGF 255
>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 16/93 (17%)
Query: 465 LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN 524
L D + D+V+W+S+ I+G+ LNG AL LF+ M+++ + N
Sbjct: 278 LVFDNMVERDVVSWTSM---------------INGYILNGDAKSALSLFKIMQIEGLRPN 322
Query: 525 EFTIDLC-SACLAGDDLRKGGELHHKTLRTGLH 556
TI L AC + ++L+ G LH ++ L+
Sbjct: 323 SVTIALILLACASLNNLKDGRCLHGWVMKQRLY 355
>gi|222626043|gb|EEE60175.1| hypothetical protein OsJ_13106 [Oryza sativa Japonica Group]
Length = 628
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
HH+E A+A +SLP+G+P+RV+++ R+C
Sbjct: 577 HHSEKLAIAFAFLSLPEGVPIRVMKNLRVC 606
>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
Length = 702
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 17/92 (18%)
Query: 444 VINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLN 503
V+N + I Y IL L +GI D+++W+SL I G+++N
Sbjct: 452 VVNNAL-ITMYAKCGRILEAGLVFNGICHADVISWNSL---------------IGGYAIN 495
Query: 504 GWYAEALGLFQTMRVDYIEANEFT-IDLCSAC 534
G+ EAL LF+ M + + +E T I + SAC
Sbjct: 496 GYGKEALKLFEEMASEGMAPDEVTFIGILSAC 527
>gi|190612775|gb|ACE80765.1| pentatricopeptide repeat protein [Porella platyphylla]
Length = 152
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 557 HTEMKAVALGLISLPDGMPVRVIRSARMCG 586
H+E A+A GLIS P G P+R+ ++ R+CG
Sbjct: 91 HSEKLAIAFGLISTPPGTPIRIFKNLRVCG 120
>gi|452000159|gb|EMD92621.1| hypothetical protein COCHEDRAFT_1155579 [Cochliobolus
heterostrophus C5]
Length = 456
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 147 RYQVGDTPTKQF---LFALDASTNFKGMPICFAHNSGTSNSHP-----SFDQKSVNVDAS 198
R +G+TP+KQF + +DAS+ +P+ +S TS P S + +S +VD
Sbjct: 221 RKSLGETPSKQFDKSMSTIDASSAQSSLPVMLGTSSTTSPVIPTVHMYSRNDRSSHVDVD 280
Query: 199 LVALVQLSSSMPIAGPPLDTSQLDIKLQPLMGLHCFKL 236
++V S I+ PP T Q IK++ G KL
Sbjct: 281 RPSVVDSSKKHKIS-PPTTTEQNIIKIETNKGAATSKL 317
>gi|334183116|ref|NP_175189.2| putative lipoyltransferase [Arabidopsis thaliana]
gi|193806408|sp|P0C7R1.1|PPR74_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g47580, chloroplastic; Flags: Precursor
gi|332194069|gb|AEE32190.1| putative lipoyltransferase [Arabidopsis thaliana]
Length = 239
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+HH+E A+A G+I+ P G +RV+++ R+CG
Sbjct: 169 MHHSERLAIAFGIINTPPGTTIRVMKNLRICG 200
>gi|218193985|gb|EEC76412.1| hypothetical protein OsI_14066 [Oryza sativa Indica Group]
Length = 628
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
HH+E A+A +SLP+G+P+RV+++ R+C
Sbjct: 577 HHSEKLAIAFAFLSLPEGVPIRVMKNLRVC 606
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 16/116 (13%)
Query: 441 RRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGF 500
RR+V++ + G Y+ ++ D + ++ W+++ ++G
Sbjct: 104 RRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAM---------------VAGL 148
Query: 501 SLNGWYAEALGLFQTMRVDYIEANEFTIDLCSACLAG-DDLRKGGELHHKTLRTGL 555
+ G+ E+LGLF MR + + +EF + S C AG D+ G ++H +R+GL
Sbjct: 149 TNLGFDEESLGLFLDMRREGMHPDEFGLGSVSRCCAGLRDVVTGRQVHAYVVRSGL 204
>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
Length = 620
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 443 DVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSL 502
D + G +G Y EI D I D+VAW+++ I+G++
Sbjct: 264 DSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAM---------------ITGYAQ 308
Query: 503 NGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMK 561
NG EA+ LF M+ + ++ T+ + SAC A L G EL GL++
Sbjct: 309 NGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYV 368
Query: 562 AVAL 565
AL
Sbjct: 369 GTAL 372
>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
Length = 766
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 470 IKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI- 528
I+ PDLV+W+S +++ +S+ G +EAL LF MR + + T+
Sbjct: 315 IEAPDLVSWNS---------------IVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVR 359
Query: 529 DLCSACLAGDDLRKGGELHHKTLRTGL 555
L AC+ D L G +H ++ GL
Sbjct: 360 GLLCACVGRDALYHGRLIHSYLVKLGL 386
>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
Length = 766
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 470 IKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI- 528
I+ PDLV+W+S +++ +S+ G +EAL LF MR + + T+
Sbjct: 315 IEAPDLVSWNS---------------IVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVR 359
Query: 529 DLCSACLAGDDLRKGGELHHKTLRTGL 555
L AC+ D L G +H ++ GL
Sbjct: 360 GLLCACVGRDALYHGRLIHSYLVKLGL 386
>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 16/84 (19%)
Query: 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCS 532
D+VAW+S VI+GF+LNG EAL L++ M + +E + FT + L S
Sbjct: 71 DIVAWNS---------------VINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLS 115
Query: 533 ACLAGDDLRKGGELHHKTLRTGLH 556
AC L G H ++ GL+
Sbjct: 116 ACAELATLVLGRRAHVYMVKVGLN 139
>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 580
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 16/126 (12%)
Query: 429 PDDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEW 488
PD F RDV++ + Y + + ++ + V+W++L
Sbjct: 199 PDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTAL------- 251
Query: 489 ASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELH 547
I+GF+ NG EAL LF+ MR + I + FT + SAC + +G E+H
Sbjct: 252 --------IAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIH 303
Query: 548 HKTLRT 553
+R+
Sbjct: 304 GHIIRS 309
>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 646
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
HH+E A+A +SLP+G+P+RV+++ R+C
Sbjct: 577 HHSEKLAIAFAFLSLPEGVPIRVMKNLRVC 606
>gi|302788478|ref|XP_002976008.1| hypothetical protein SELMODRAFT_104228 [Selaginella moellendorffii]
gi|300156284|gb|EFJ22913.1| hypothetical protein SELMODRAFT_104228 [Selaginella moellendorffii]
Length = 495
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 41/216 (18%)
Query: 358 LVNEYGTSKNLAKRVKKFVE----KDAKNWSGPGSYPSTKSFHTNRLQAKRQLRR----- 408
L+N YG + + ++F E ++ +WS + + + H L +++
Sbjct: 16 LLNMYGKCGGV-EEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKMEEEGVEP 74
Query: 409 ----FISDVDSSYLPPEGCPNYKPPDD-KFIARLWAARR---DVINGVVSIGEYVCVAEI 460
F+S +D+ C N + + + I RL A ++ +I G +G Y + +
Sbjct: 75 NEVTFLSVLDA-------CANAEAVEQGEMIHRLVARKKLDVGLIVGTALVGMYGKCSRL 127
Query: 461 LVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDY 520
+ DGI D+V WS+++S + + R EA+ LF M +D
Sbjct: 128 IEARQVFDGIVEKDVVTWSTMISAYAQLGHVR---------------EAIQLFGYMNLDG 172
Query: 521 IEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
+ NE + + AC + L +G H + G
Sbjct: 173 VRPNEIILMSILGACSSAGALAEGKMTHELVVICGF 208
>gi|297744007|emb|CBI36977.3| unnamed protein product [Vitis vinifera]
Length = 372
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 474 DLVAWSSLL-------------SVHEEWASRRVV---LVISGFSLNGWYAEALGLFQTMR 517
++V+W++L+ SV + R VV ++ISG+ NG + +AL LF M
Sbjct: 214 NVVSWTTLVNGYIGNKKTSAARSVFDRMTERNVVSWTVMISGYVQNGKFVDALRLFLLML 273
Query: 518 VDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
+ N FT+ + AC L G ++H L++G+
Sbjct: 274 RSGTQGNHFTLSSVLEACAGCSSLLLGKQVHLNVLKSGI 312
>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 760
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 15/61 (24%)
Query: 539 DLRKGGELHHKTLRTGLH-------------HTEMKAVALGLISLPDGMPVRVIRSARMC 585
++RK G H L LH H+E AV GL++ PDG P++VI++ R+C
Sbjct: 663 EMRKSG--HRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRIC 720
Query: 586 G 586
G
Sbjct: 721 G 721
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 439 AARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVIS 498
++ RDV++ I Y +I D I D+V+W+++ IS
Sbjct: 125 SSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAM---------------IS 169
Query: 499 GFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELH 547
G++ G Y EAL LF+ M + +E T + + SAC + G ++H
Sbjct: 170 GYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVH 219
>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
chloroplastic [Vitis vinifera]
gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
Length = 880
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 552 RTGLHHTEMKAVALGLISLPDGMPVRVIRSARMC 585
R HH+E AVA GLIS P P+R+I++ R+C
Sbjct: 807 RALAHHSEKLAVAFGLISTPPKAPIRIIKNIRIC 840
>gi|145340387|ref|NP_193587.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122236144|sp|Q0WNP3.1|PP319_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18520
gi|110738662|dbj|BAF01256.1| hypothetical protein [Arabidopsis thaliana]
gi|332658657|gb|AEE84057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 617
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 80/215 (37%), Gaps = 37/215 (17%)
Query: 358 LVNEYGTSKNLAKRVKKF---VEKDAKNWSGPGSYPSTKSFHTNRLQAKRQLRRFISDVD 414
LV Y L ++ F EKD +W+ S S K + + FI ++
Sbjct: 224 LVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACSRKG------HGIKAIGMFIGMLN 277
Query: 415 SSYLPPE--GCPNYKPPDDKFIARLW----------AARRDVINGVVSIGEYVCVAEILV 462
+LP E C K ++ R + DV G + Y EI
Sbjct: 278 HWFLPNEFTVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISD 337
Query: 463 MLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIE 522
DG+ + V W+S+++ H G+ EA+ LF+ M+ ++
Sbjct: 338 CRKVFDGMSNRNTVTWTSIIAAHAR---------------EGFGEEAISLFRIMKRRHLI 382
Query: 523 ANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLH 556
AN T + + AC + L G ELH + ++ +
Sbjct: 383 ANNLTVVSILRACGSVGALLLGKELHAQIIKNSIE 417
>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g68930-like [Cucumis
sativus]
Length = 695
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 16/96 (16%)
Query: 471 KRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTID- 529
K D+V W++++ G++ NG +AL LF M +++IE + +T+
Sbjct: 283 KEKDIVCWTAMMV---------------GYAKNGREEDALLLFNEMLLEHIEPDSYTLSS 327
Query: 530 LCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
+ S+C L G +H K++ GL++ + + AL
Sbjct: 328 VVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSAL 363
>gi|28876027|gb|AAO60036.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 704
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
HH+E A+A +SLP+G+P+RV+++ R+C
Sbjct: 643 HHSEKLAIAFAFLSLPEGVPIRVMKNLRVC 672
>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Glycine max]
Length = 635
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 543 GGELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
G EL + L L H+E A+A GL+ +P G+P+RV ++ R+CG
Sbjct: 556 GEELKEQLL---LWHSEKLAIAFGLLKVPLGVPIRVFKNLRVCG 596
>gi|255543188|ref|XP_002512657.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548618|gb|EEF50109.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 837
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 21/113 (18%)
Query: 449 VSIGE-----YVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLN 503
VS+G Y+ A + +GI P+ V+WS++ I+G+
Sbjct: 327 VSVGTPLVDFYIKCASFELASKVFEGISEPNDVSWSAM---------------ITGYCQI 371
Query: 504 GWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGL 555
G + EAL +F+++R + N FT + AC A D G ++H ++ L
Sbjct: 372 GEFEEALKIFESLRSNIENLNSFTYTSIFQACSALADFSTGTQVHADAIKRSL 424
>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
Length = 749
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 470 IKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI- 528
I+ PDLV+W+S +++ +S+ G +EAL LF MR + + T+
Sbjct: 298 IEAPDLVSWNS---------------IVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVR 342
Query: 529 DLCSACLAGDDLRKGGELHHKTLRTGL 555
L AC+ D L G +H ++ GL
Sbjct: 343 GLLCACVGRDALYHGRLIHSYLVKLGL 369
>gi|7799764|emb|CAA06832.1| DYW10 protein [Arabidopsis thaliana]
Length = 105
Score = 40.0 bits (92), Expect = 3.9, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L H+E AVA G I LP+G P++V ++ R+CG
Sbjct: 35 LWHSEKLAVAFGCIKLPEGSPIQVFKNLRICG 66
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 439 AARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVIS 498
+++RDV++ I Y ++ D I D+V+W+++ I+
Sbjct: 144 SSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAM---------------IT 188
Query: 499 GFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELH 547
G+ N Y EAL LF+ M + +E T + + SAC + G E+H
Sbjct: 189 GYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIH 238
>gi|190612765|gb|ACE80760.1| pentatricopeptide repeat protein [Pellia epiphylla]
Length = 152
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 557 HTEMKAVALGLISLPDGMPVRVIRSARMCG 586
H+E A+A GLIS P G P+R+ ++ R+CG
Sbjct: 91 HSEKLAIAFGLISTPSGQPLRIFKNLRICG 120
>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 695
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 16/96 (16%)
Query: 471 KRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTID- 529
K D+V W++++ G++ NG +AL LF M +++IE + +T+
Sbjct: 283 KEKDIVCWTAMMV---------------GYAKNGREEDALLLFNEMLLEHIEPDSYTLSS 327
Query: 530 LCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
+ S+C L G +H K++ GL++ + + AL
Sbjct: 328 VVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSAL 363
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 23/169 (13%)
Query: 381 KNWSGPGSYPSTKSFHTNRLQAKRQLRRFI-SDVDSSYLPPEGCPNYKPPDDKFIARLWA 439
K+ + ++ + H L+ L R++ + + S Y G + + D +
Sbjct: 72 KSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDA------S 125
Query: 440 ARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISG 499
+ RDV++ I Y + D I D+V+W+++ I+G
Sbjct: 126 SHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAM---------------ITG 170
Query: 500 FSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELH 547
+ NG Y EAL LF+ M + +E T + + SAC + G ++H
Sbjct: 171 YVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVH 219
>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
Length = 684
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GL++LP +P+R+ ++ R+CG
Sbjct: 615 HHSEKLALAFGLVALPLSVPIRITKNLRICG 645
>gi|302142415|emb|CBI19618.3| unnamed protein product [Vitis vinifera]
Length = 576
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E A+A GLIS P G +R+I++ R+CG
Sbjct: 506 LYHSERLAIAYGLISTPPGTTLRIIKNLRICG 537
>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
Length = 736
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 98/275 (35%), Gaps = 57/275 (20%)
Query: 307 IKEKFEPVG--FVVGFPVGSPEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGT 364
+ E P G FVV V S KD KQ H ++L G L+ Y
Sbjct: 50 VLEGLRPDGAMFVVAIGVCSSSKDL-KQGQLLHAMILETRLLEFDIILGTA--LITMYAR 106
Query: 365 SKNLAKRVKKFVEKDAKN---WSGPGSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPE 421
++L K F E K W+ + S H L + D+ S PE
Sbjct: 107 CRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGAL-------KIYQDMVSK--SPE 157
Query: 422 GCPNYKPPDDKFIARLWAAR-------------RDVINGVVS--------IGEYVCVAEI 460
G KP F + L+A R V +G S I Y +
Sbjct: 158 G---MKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSL 214
Query: 461 LVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDY 520
D +K D++AW+++ ISG++ G +AL LFQ M +
Sbjct: 215 ESARKVFDRLKNRDVIAWNTM---------------ISGYAKQGAATQALELFQRMGPND 259
Query: 521 IEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTG 554
+ N T I L +AC +DL +G +H K G
Sbjct: 260 PKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDG 294
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 451 IGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVL--------------- 495
I Y + L D I +PD V+W+S++ + + + L
Sbjct: 186 INSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWT 245
Query: 496 -VISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRT 553
+ISG+ G + EAL LF M+ +E + ++ + SAC L +G +H +T
Sbjct: 246 TMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKT 305
>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
Length = 708
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
HH+E A+A +SLP+G+P+RV+++ R+C
Sbjct: 639 HHSEKLAIAFAFLSLPEGVPIRVMKNLRVC 668
>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
Length = 706
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 99/219 (45%), Gaps = 39/219 (17%)
Query: 358 LVNEYGTSKNLAKRVKKF---VEKDAKNWSGPGSYPSTKSFHTNRLQAKRQLRR-FISDV 413
LV+ Y +L + VK F E +A +W+ + + + H L+A R L++ F+ +
Sbjct: 177 LVSMYSKCGSLEESVKTFESMTELNAVSWN---AMIAAFAEHRRGLEALRTLQKMFLEGI 233
Query: 414 D----------SSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSI-GEYVCVAEILV 462
S+Y P + + D + + +DV+N ++++ G+ C+ +
Sbjct: 234 RACSVTYITLMSAYDQPSQLKSARYIHDCILRTGF--DQDVVNVILNMYGKCGCLQDAEA 291
Query: 463 MLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIE 522
M + +PD++AW+++ I+ +S +G +EAL ++ M+ + +
Sbjct: 292 MF---KSMSQPDVIAWNTM---------------IAAYSQHGHTSEALRFYELMQEEGVV 333
Query: 523 ANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLHHTEM 560
+++T + + AC D+ G ++H + TE+
Sbjct: 334 PDDYTYVSVIDACATLGDMEVGKQVHRRLGDRAFQVTEL 372
>gi|190612857|gb|ACE80806.1| pentatricopeptide repeat protein [Picea abies]
Length = 152
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLI+ P G +R+I++ R+CG
Sbjct: 90 HHSEKLAIAFGLINTPPGTTIRIIKNLRVCG 120
>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
Length = 824
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVD--YIEANEFT-IDLCSACLAGDDLRKGGELHHKTLR 552
+ISG++ NG+ +EA+ ++ M + I AN+ T + + AC LR+G +LH + L+
Sbjct: 421 IISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLK 480
Query: 553 TGLH 556
GL+
Sbjct: 481 NGLY 484
>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 16/87 (18%)
Query: 470 IKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-I 528
I D+VAW+S +IS FS NG EAL LF MR+ + + T +
Sbjct: 364 ISDRDVVAWNS---------------IISAFSQNGSAYEALELFHQMRMGSVLPDAVTLV 408
Query: 529 DLCSACLAGDDLRKGGELHHKTLRTGL 555
+ SAC + + L+ G H ++ GL
Sbjct: 409 SVLSACASLNALQVGSSFHAYAVKRGL 435
>gi|190612827|gb|ACE80791.1| pentatricopeptide repeat protein [Pilularia globulifera]
Length = 152
Score = 39.7 bits (91), Expect = 4.1, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLIS P G +R+ ++ R+CG
Sbjct: 90 HHSEKLAIAFGLISTPPGTTLRIFKNLRVCG 120
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 17/122 (13%)
Query: 451 IGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVH-------------EEWASRRVV--- 494
I Y A +L DG+ D ++W+S++S H + R +V
Sbjct: 161 IDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWT 220
Query: 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRT 553
+ISG++ G YA+AL +F+ M++ +E +E + I + AC L G +H R
Sbjct: 221 AMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRN 280
Query: 554 GL 555
GL
Sbjct: 281 GL 282
>gi|449521367|ref|XP_004167701.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like, partial [Cucumis sativus]
Length = 390
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
+H+E AVA GL+ P G P+RVI++ RMC
Sbjct: 321 YHSEKLAVAYGLMKTPSGAPIRVIKNLRMC 350
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 16/91 (17%)
Query: 466 FLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANE 525
D + D+V+WSS+ ISG++ N + E L LFQ M++ + +E
Sbjct: 329 IFDSMPEKDVVSWSSM---------------ISGYAQNDLFDETLALFQEMQMSGFKPDE 373
Query: 526 FT-IDLCSACLAGDDLRKGGELHHKTLRTGL 555
T + + SAC L +G +H R GL
Sbjct: 374 TTLVSVISACARLAALEQGKWVHAYIKRNGL 404
>gi|297723953|ref|NP_001174340.1| Os05g0313600 [Oryza sativa Japonica Group]
gi|222631076|gb|EEE63208.1| hypothetical protein OsJ_18018 [Oryza sativa Japonica Group]
gi|255676232|dbj|BAH93068.1| Os05g0313600 [Oryza sativa Japonica Group]
Length = 620
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 443 DVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSL 502
D + G +G Y EI D I D+VAW+++ I+G++
Sbjct: 264 DSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAM---------------ITGYAQ 308
Query: 503 NGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMK 561
NG EA+ LF M+ + ++ T+ + SAC A L G EL GL++
Sbjct: 309 NGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYV 368
Query: 562 AVAL 565
AL
Sbjct: 369 GTAL 372
>gi|358357222|gb|AEU08451.1| pentatricopeptide repeat protein [Takakia lepidozioides]
Length = 151
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E AVA LI P GMP+RV ++ RMCG
Sbjct: 89 YHSERLAVAFELIRTPPGMPLRVTKNLRMCG 119
>gi|358357244|gb|AEU08462.1| pentatricopeptide repeat protein [Takakia lepidozioides]
Length = 152
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E A+A GLIS P G P+R+I++ R+CG
Sbjct: 90 YHSEKLAMAFGLISTPAGTPMRIIKNLRVCG 120
>gi|326504782|dbj|BAK06682.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 686
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 456 CVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVL---VISGFSLNGWYAEALGL 512
C ++LV +D + +A + + R VV+ +ISG+ +G AEA+GL
Sbjct: 427 CREDVLVNTALIDMYAKSGSIAHARRVFEQMHAQERDVVVWSALISGYGAHGHLAEAVGL 486
Query: 513 FQTMRVDYIEANEFT-IDLCSACLAGDDLRKG 543
F+ M++ ++ N+ T + L SAC + KG
Sbjct: 487 FEDMKLAGVKPNDVTFLGLLSACNHAGAVEKG 518
>gi|224150202|ref|XP_002336922.1| predicted protein [Populus trichocarpa]
gi|222837142|gb|EEE75521.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 549 KTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMC 585
K + ++H+E AV GL++ P G P+RVI+S MC
Sbjct: 164 KAFSSAVYHSEKLAVTFGLLNTPIGAPIRVIKSVTMC 200
>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 573
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 557 HTEMKAVALGLISLPDGMPVRVIRSARMCG 586
H+E A+A GLI++P+G P+R+ ++ R+CG
Sbjct: 505 HSEKLAIAFGLIAIPEGEPIRISKNLRVCG 534
>gi|302824994|ref|XP_002994134.1| hypothetical protein SELMODRAFT_138241 [Selaginella moellendorffii]
gi|300138010|gb|EFJ04795.1| hypothetical protein SELMODRAFT_138241 [Selaginella moellendorffii]
Length = 439
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 468 DGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT 527
D +KR D+VAW++L I+ ++ NG EAL L+ +M D + N++T
Sbjct: 68 DRLKRRDVVAWTAL---------------ITAYTQNGHCEEALDLYSSMEPDGVAPNQYT 112
Query: 528 IDLC-SACLAGDDLRKGGELHHKTLRTGL 555
+ AC L +G +H + GL
Sbjct: 113 FTIVIDACAELGRLDEGIAIHARITAAGL 141
>gi|449530420|ref|XP_004172193.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
mitochondrial-like, partial [Cucumis sativus]
Length = 719
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 17/129 (13%)
Query: 444 VINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLS-------------VHEEWAS 490
+++ V I Y V + + DG+ D+V+WSS++S + ++
Sbjct: 177 IVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKMPD 236
Query: 491 RRVV---LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGGEL 546
R VV L+I G+ + + LF MR + +E N T+ L AC + D +G ++
Sbjct: 237 RNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLEACGSFDRYGEGIQI 296
Query: 547 HHKTLRTGL 555
H L G
Sbjct: 297 HGLVLSLGF 305
>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
Length = 781
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMC 585
+H+E A+A GLIS P G P+RVI++ R+C
Sbjct: 711 FYHSERLAIAFGLISTPPGTPLRVIKNLRVC 741
>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
Length = 684
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 16/87 (18%)
Query: 470 IKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-I 528
I P+ V+WS+L I+G+ G + EAL F+++R ++ N FT
Sbjct: 273 ISEPNDVSWSAL---------------ITGYCQMGEFEEALKTFESLRTRSVDINSFTYT 317
Query: 529 DLCSACLAGDDLRKGGELHHKTLRTGL 555
+ AC A D G + H +++ L
Sbjct: 318 SIFQACSALADFNSGAQAHADAIKSSL 344
>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Vitis vinifera]
Length = 913
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 22/119 (18%)
Query: 468 DGIKRPDLVAWSSLLSVHEEWASRRVVL--------------------VISGFSLNGWYA 507
+GIK PDLV W+ ++S + W + L +ISG S G
Sbjct: 465 EGIK-PDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNR 523
Query: 508 EALGLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
++L F M+ + + N +I L AC + L+KG E+H ++R G A AL
Sbjct: 524 DSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATAL 582
>gi|302805176|ref|XP_002984339.1| hypothetical protein SELMODRAFT_120395 [Selaginella moellendorffii]
gi|300147727|gb|EFJ14389.1| hypothetical protein SELMODRAFT_120395 [Selaginella moellendorffii]
Length = 479
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 16/83 (19%)
Query: 466 FLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANE 525
LD + +PD++AWS+ VI+GF+ G ++AL LF+ M+ + + AN+
Sbjct: 116 MLDEMFQPDVIAWSA---------------VITGFAQQGRSSDALHLFRRMQHEGVIANK 160
Query: 526 FT-IDLCSACLAGDDLRKGGELH 547
T + SAC L G LH
Sbjct: 161 ITLVATLSACTDSSSLADGKFLH 183
>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 999
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 18/105 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
D I D V+W+SL +SGF+ +G++ EAL +F M +E N F
Sbjct: 597 FDQIYAKDNVSWNSL---------------VSGFAQSGYFEEALNIFAQMNKAGLEINSF 641
Query: 527 TI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALGLISL 570
T SA ++R G ++H +TG + V+ LI+L
Sbjct: 642 TFGSAVSAAANIANVRIGKQIHGMIRKTG--YDSETEVSNALITL 684
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 16/110 (14%)
Query: 439 AARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVIS 498
++ RDV++ I Y I D I D+V+W+++ IS
Sbjct: 127 SSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAM---------------IS 171
Query: 499 GFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELH 547
G++ G Y EAL LF+ M + +E T + + SAC + G ++H
Sbjct: 172 GYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVH 221
>gi|125589603|gb|EAZ29953.1| hypothetical protein OsJ_14007 [Oryza sativa Japonica Group]
Length = 504
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E A+A GLIS P P+R+I++ R+CG
Sbjct: 434 LYHSERLAIAYGLISTPARTPLRIIKNLRICG 465
>gi|125547430|gb|EAY93252.1| hypothetical protein OsI_15058 [Oryza sativa Indica Group]
Length = 407
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E A+A GLIS P P+R+I++ R+CG
Sbjct: 337 LYHSERLAIAYGLISTPARTPLRIIKNLRICG 368
>gi|125547603|gb|EAY93425.1| hypothetical protein OsI_15226 [Oryza sativa Indica Group]
Length = 450
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 466 FLDGIKRPDLVAWSSLLSVHEEWAS-RRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN 524
D + D+V+W+SL+S H R V ++SG ++G A+ L +R
Sbjct: 72 LFDEMPARDVVSWTSLVSGHAGVGDVREVSCLLSGMRVDGCEPSAVTLMVVLR------- 124
Query: 525 EFTIDLCSACLAGDDLRKGGELHHKTLRTGLHHT--EMKAVALGLISLP 571
AC + +D+ GG+LH+ +++GL + ++ + L LP
Sbjct: 125 --------ACTSNEDVVGGGQLHYYAVKSGLSDNLLVLNSILMYLCRLP 165
>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
Length = 751
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
HH+E A+A GLI +P MP+R++++ R+C
Sbjct: 682 HHSEKLAIAFGLIFVPQEMPIRIVKNLRVC 711
>gi|259490048|ref|NP_001159270.1| uncharacterized protein LOC100304360 [Zea mays]
gi|223943115|gb|ACN25641.1| unknown [Zea mays]
gi|413948667|gb|AFW81316.1| pentatricopeptide repeat (PPR) superfamily protein [Zea mays]
Length = 580
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E A+A GLIS P P+R+I++ R+CG
Sbjct: 510 LYHSERLAIAYGLISTPARTPLRIIKNLRICG 541
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 16/80 (20%)
Query: 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCS 532
D+V W+++ I+G++ N W EA+ LF +M ++ NE T I L S
Sbjct: 217 DVVTWTTM---------------INGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLS 261
Query: 533 ACLAGDDLRKGGELHHKTLR 552
AC D G LH R
Sbjct: 262 ACSQKGDSEMGKTLHEHIRR 281
>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
protein [Oryza sativa Japonica Group]
gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 751
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
HH+E A+A GLI +P MP+R++++ R+C
Sbjct: 682 HHSEKLAIAFGLIFVPQEMPIRIVKNLRVC 711
>gi|302761592|ref|XP_002964218.1| hypothetical protein SELMODRAFT_21888 [Selaginella moellendorffii]
gi|300167947|gb|EFJ34551.1| hypothetical protein SELMODRAFT_21888 [Selaginella moellendorffii]
Length = 412
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRT 553
+ I+ +++NG Y+ AL LF+ M +D ++AN T +++ SAC D R+ +H + +
Sbjct: 23 IAIAAYAVNGDYSGALALFRKMDLDGVKANFVTYVNVISACSGLLDPRECTRVHSRVVEE 82
Query: 554 GLHHTEMKAVAL 565
G + A AL
Sbjct: 83 GFDGDLVVATAL 94
>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 760
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 557 HTEMKAVALGLISLPDGMPVRVIRSARMCG 586
H+E AV GL++ PDG P++VI++ R+CG
Sbjct: 692 HSEKLAVVFGLLNTPDGTPLQVIKNLRICG 721
>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 749
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 549 KTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMC 585
+ L + + H+E A+A GL++LP P+RV++S MC
Sbjct: 670 RVLSSTVLHSEKLAIAFGLLNLPTATPIRVVKSITMC 706
>gi|297602164|ref|NP_001052155.2| Os04g0174800 [Oryza sativa Japonica Group]
gi|255675179|dbj|BAF14069.2| Os04g0174800 [Oryza sativa Japonica Group]
Length = 299
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E A+A GLIS P P+R+I++ R+CG
Sbjct: 229 LYHSERLAIAYGLISTPARTPLRIIKNLRICG 260
>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 922
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFS 501
++V+ G I Y + D ++ P+ V+W+++++ + E
Sbjct: 286 QEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSWNAMIAGYGE-------------- 331
Query: 502 LNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEM 560
G+ EA LF+ M+ + + FT L + C DL +G ELH + +RT
Sbjct: 332 --GFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQIVRTAWEAD-- 387
Query: 561 KAVALGLISL 570
VA LIS+
Sbjct: 388 VTVATALISM 397
>gi|358357238|gb|AEU08459.1| pentatricopeptide repeat protein [Takakia lepidozioides]
Length = 152
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A++ GLIS G P+RVI++ R+CG
Sbjct: 90 HHSEKLAISFGLISTAPGTPLRVIKNLRVCG 120
>gi|242089073|ref|XP_002440369.1| hypothetical protein SORBIDRAFT_09g030460 [Sorghum bicolor]
gi|241945654|gb|EES18799.1| hypothetical protein SORBIDRAFT_09g030460 [Sorghum bicolor]
Length = 642
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E A+A GLIS P P+R+I++ R+CG
Sbjct: 572 LYHSERLAIAYGLISTPARTPLRIIKNLRICG 603
>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 755
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 549 KTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMC 585
+ L + + H+E A+A GL++LP P+RV++S MC
Sbjct: 676 RVLSSTVLHSEKLAIAFGLLNLPTATPIRVVKSITMC 712
>gi|356497951|ref|XP_003517819.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial-like [Glycine max]
Length = 828
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTG 554
+I GFS NG EAL LF M + ++ NE T + AC L KG +HHK + +G
Sbjct: 477 MICGFSQNGISVEALKLFDEMCFNCMDINEVTFLSAIQACSNSGYLLKGKWIHHKLVVSG 536
Query: 555 LH 556
+
Sbjct: 537 VQ 538
>gi|357463685|ref|XP_003602124.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491172|gb|AES72375.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHH 548
+I+G+ NG +AL F M VD E +EFT + + SAC DL G ++HH
Sbjct: 249 MIAGYVQNGCGEKALEAFGEMGVDGFEPDEFTVVSVLSACAQLGDLDAGKQMHH 302
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 552 RTGLHHTEMKAVALGLISLPDGMPVRVIRSARMC 585
R HH+E A+A GLIS P G P+R+ ++ R+C
Sbjct: 731 RAVCHHSEKLAIAYGLISTPPGTPIRISKNLRVC 764
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRT 553
++ISG++ G EA LF M+ + +E ++FT + + SAC + L G E+H + +
Sbjct: 99 VMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEA 158
Query: 554 GL 555
GL
Sbjct: 159 GL 160
>gi|357508535|ref|XP_003624556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499571|gb|AES80774.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 476
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 22/136 (16%)
Query: 431 DKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWAS 490
DK R + VI G+V+ G+ E+ + I ++V+W+++
Sbjct: 178 DKMRVRNVVSWTTVIAGLVACGKLDTAREVF------ERIPSKNVVSWTAM--------- 222
Query: 491 RRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHK 549
I+G+ N +A LF+ M +D + NEFT + L AC L+ G +H
Sbjct: 223 ------INGYVKNDNPIKAFDLFERMLIDNVRPNEFTLVSLIKACTDLGSLKLGRRMHDF 276
Query: 550 TLRTGLHHTEMKAVAL 565
L+ G AL
Sbjct: 277 ALKNGFELGPFLGTAL 292
>gi|147835805|emb|CAN64107.1| hypothetical protein VITISV_013147 [Vitis vinifera]
Length = 497
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E A+A GLIS P P+R+I++ R+CG
Sbjct: 408 LYHSERLAIAYGLISTPARTPLRIIKNLRICG 439
>gi|357140545|ref|XP_003571826.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Brachypodium distachyon]
Length = 489
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 21/103 (20%)
Query: 466 FLDGIKRPDLVAWSSLL-------------SVHEEWASRRVV---LVISGFSLNGWYAEA 509
D I RP+ V+W++LL V + R VV +I G G Y EA
Sbjct: 118 LFDEIPRPNPVSWNALLDGYAKCRDLSAAREVFDRMPHRDVVSWSAMIDGCVKCGEYREA 177
Query: 510 LGLFQTMRVDY----IEANEFT-IDLCSACLAGDDLRKGGELH 547
L LF+ M + AN+ T I + AC DLR+G ++H
Sbjct: 178 LALFEMMEAAATGHGVRANDVTMISMLGACAHLGDLRRGRQMH 220
>gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Glycine max]
Length = 911
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 22/129 (17%)
Query: 458 AEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVL--------------------VI 497
AE L+ + +GIK PDLV W+SL+S + L +I
Sbjct: 453 AEKLLNQMKEEGIK-PDLVTWNSLVSGYSMSGRSEEALAVINRIKSLGLTPNVVSWTAMI 511
Query: 498 SGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLH 556
SG N Y +AL F M+ + ++ N TI L AC L+ G E+H ++R G
Sbjct: 512 SGCCQNENYMDALQFFSQMQEENVKPNSTTICTLLRACAGSSLLKIGEEIHCFSMRHGFL 571
Query: 557 HTEMKAVAL 565
A AL
Sbjct: 572 DDIYIATAL 580
>gi|410109995|gb|AFV61077.1| pentatricopeptide repeat-containing protein 81, partial [Lantana
microcephala]
Length = 394
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Query: 464 LLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEA 523
L + I DLV+W+++L+ G S NG AL LFQ + VD++
Sbjct: 222 LKIFERINVKDLVSWNTILT---------------GLSQNGLSENALRLFQNIHVDHLVI 266
Query: 524 NEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
+++T + +C L G ++H +++GL E A AL
Sbjct: 267 DQYTFAAVLRSCSDLATLHLGRQIHVLVVKSGLEGNEYVASAL 309
>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 702
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 17/85 (20%)
Query: 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDY-IEANEFTI-DLC 531
D ++W+S+ ISG++ N + EAL +F+ + ++ IEA+ FT+ +
Sbjct: 240 DTISWNSM---------------ISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVL 284
Query: 532 SACLAGDDLRKGGELHHKTLRTGLH 556
+AC LR+G E+H + + GLH
Sbjct: 285 AACADMASLRRGKEVHAQAVVRGLH 309
>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Brachypodium distachyon]
Length = 661
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 557 HTEMKAVALGLISLPDGMPVRVIRSARMCG 586
H+E AVALGLIS G P+RVI++ R+CG
Sbjct: 593 HSEKLAVALGLISTRPGTPLRVIKNLRICG 622
>gi|302789163|ref|XP_002976350.1| hypothetical protein SELMODRAFT_56766 [Selaginella moellendorffii]
gi|300155980|gb|EFJ22610.1| hypothetical protein SELMODRAFT_56766 [Selaginella moellendorffii]
Length = 336
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 479 SSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAG 537
+SL+S+ W S +++ +S NG+ +AL L+ M +E E T + +AC
Sbjct: 149 TSLISIPAVWNS-----MVAAYSQNGYTKKALELYWKMEFVGVERTEITYVSALAACAKA 203
Query: 538 DDLRKGGELHHKTLRTGLHHTEMKAVALGLISL 570
L G E+H + +GL +E ++ GLI++
Sbjct: 204 GLLEDGREIHGHVVVSGLESSE--SIGAGLINM 234
>gi|388511541|gb|AFK43832.1| unknown [Lotus japonicus]
Length = 295
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E A+A GLIS P P+R+I++ R+CG
Sbjct: 225 LYHSERLAIAYGLISTPPRTPLRIIKNLRVCG 256
>gi|357162206|ref|XP_003579338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g20730-like [Brachypodium distachyon]
Length = 558
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 16/82 (19%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
DG+ +V+W+++ +SG+S NG EAL LF M + N+F
Sbjct: 69 FDGMPHRSVVSWTAM---------------VSGYSRNGQTREALDLFTLMLASGVRPNQF 113
Query: 527 TI-DLCSACLAGDDLRKGGELH 547
T + SAC +R G ++H
Sbjct: 114 TYGSVASACAGAGCVRSGEQVH 135
>gi|225444971|ref|XP_002279824.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15690-like [Vitis vinifera]
Length = 476
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E A+A GLIS P P+R+I++ R+CG
Sbjct: 406 LYHSERLAIAYGLISTPARTPLRIIKNLRICG 437
>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Glycine max]
Length = 694
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 16/109 (14%)
Query: 447 GVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWY 506
G + I Y E+L DG++ ++V W++L++ + + NG++
Sbjct: 259 GSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQ---------------NGYF 303
Query: 507 AEALGLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGGELHHKTLRTG 554
E+L LF M + NE+T L +AC LR G LH + + G
Sbjct: 304 EESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLG 352
>gi|302794572|ref|XP_002979050.1| hypothetical protein SELMODRAFT_152973 [Selaginella moellendorffii]
gi|300153368|gb|EFJ20007.1| hypothetical protein SELMODRAFT_152973 [Selaginella moellendorffii]
Length = 871
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTG 554
+++ + G + EA G + M+++ I NEFT ++ +C GDDL +G LH G
Sbjct: 1 MVAAYVQAGHHKEAFGCLRRMQLEGISPNEFTFVNALGSCGCGDDLARGRTLHGWISEGG 60
Query: 555 LHHTEMKAVALGLISL 570
+ +A L+S+
Sbjct: 61 MDLDSNSVLANALVSM 76
>gi|38347147|emb|CAD39490.2| OSJNBa0039G19.7 [Oryza sativa Japonica Group]
Length = 557
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E A+A GLIS P P+R+I++ R+CG
Sbjct: 487 LYHSERLAIAYGLISTPARTPLRIIKNLRICG 518
>gi|190612825|gb|ACE80790.1| pentatricopeptide repeat protein [Equisetum telmateia]
Length = 152
Score = 39.3 bits (90), Expect = 5.5, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
HH+E A+A GL+ P G P+R+I++ R+C
Sbjct: 90 HHSERLAIAYGLLKTPPGTPLRIIKNLRVC 119
>gi|367059928|gb|AEX10959.1| hypothetical protein 0_10719_01 [Pinus taeda]
gi|367059930|gb|AEX10960.1| hypothetical protein 0_10719_01 [Pinus taeda]
gi|367059932|gb|AEX10961.1| hypothetical protein 0_10719_01 [Pinus taeda]
gi|367059934|gb|AEX10962.1| hypothetical protein 0_10719_01 [Pinus taeda]
gi|367059936|gb|AEX10963.1| hypothetical protein 0_10719_01 [Pinus taeda]
gi|367059938|gb|AEX10964.1| hypothetical protein 0_10719_01 [Pinus taeda]
gi|367059940|gb|AEX10965.1| hypothetical protein 0_10719_01 [Pinus taeda]
gi|367059942|gb|AEX10966.1| hypothetical protein 0_10719_01 [Pinus taeda]
gi|367059944|gb|AEX10967.1| hypothetical protein 0_10719_01 [Pinus taeda]
gi|367059946|gb|AEX10968.1| hypothetical protein 0_10719_01 [Pinus taeda]
gi|367059948|gb|AEX10969.1| hypothetical protein 0_10719_01 [Pinus taeda]
Length = 153
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLI+ G P+R+I++ R+CG
Sbjct: 84 HHSEKLALAFGLINTSPGNPIRIIKNLRVCG 114
>gi|326507562|dbj|BAK03174.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 26/30 (86%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
+H+E A+ALGL+ +P+G+P+RV+++ R+C
Sbjct: 529 YHSERLAIALGLLIVPEGVPIRVMKNLRVC 558
>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 866
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 514 QTMRVDYIEANEFTIDLCSACLAGDD---LRKGGELHHKTLRTGLHHTEMKAVALGLISL 570
Q+ R+ Y++ E +I L A D L E H + + + H+E A+A GLI+
Sbjct: 755 QSDRI-YLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILS--QHSERLAIAFGLIAT 811
Query: 571 PDGMPVRVIRSARMCG 586
P G P++++++ R+CG
Sbjct: 812 PPGTPIQIVKNLRVCG 827
>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Glycine max]
Length = 703
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 16/113 (14%)
Query: 443 DVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSL 502
DV I Y E+L DG++ ++VAW+++L+ + +
Sbjct: 263 DVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQ--------------- 307
Query: 503 NGWYAEALGLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGGELHHKTLRTG 554
NG + E L LF M ++ NEFT L +AC + L G LH + + +G
Sbjct: 308 NGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSG 360
>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g57430, chloroplastic-like [Cucumis sativus]
Length = 863
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
HH+E AVA GLI+ P G P+RV ++ R+C
Sbjct: 794 HHSEKLAVAFGLIATPPGAPIRVKKNLRVC 823
>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Brachypodium distachyon]
Length = 646
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 16/91 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
D + D+V+W++L + G + +G + EALGL + M D + + F
Sbjct: 130 FDEMPEKDVVSWNTL---------------VLGCAESGRHGEALGLVREMWRDGCKPDSF 174
Query: 527 TIDLCSACLA-GDDLRKGGELHHKTLRTGLH 556
T+ A G D+R+G ELH R G H
Sbjct: 175 TLSSVLPIFAEGADVRRGMELHGFATRNGFH 205
>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
gi|219884683|gb|ACL52716.1| unknown [Zea mays]
gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
Length = 601
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 23/125 (18%)
Query: 435 ARLWAARRDVINGVVSIG---EYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASR 491
A+ W + D+ N +V YV I D + R D+VAWS++
Sbjct: 232 AKAWVSEEDLQNVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTM---------- 281
Query: 492 RVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSAC--LAGDDLRK--GGEL 546
I+G+S NG E+L LF+ M+ + NE T + + SAC L D+L + G +
Sbjct: 282 -----IAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYI 336
Query: 547 HHKTL 551
+TL
Sbjct: 337 ESQTL 341
>gi|242056975|ref|XP_002457633.1| hypothetical protein SORBIDRAFT_03g010835 [Sorghum bicolor]
gi|241929608|gb|EES02753.1| hypothetical protein SORBIDRAFT_03g010835 [Sorghum bicolor]
Length = 396
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E A+A GLIS P P+R+I++ R+CG
Sbjct: 326 LYHSERLAIAYGLISTPARTPLRIIKNLRICG 357
>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
Length = 683
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCS 532
++V+W+S+LS G NG+ A+ L LF MR D + +E+TI + +
Sbjct: 197 NVVSWTSMLS---------------GCVQNGFAADGLLLFNKMRQDNVPPSEYTIATVIT 241
Query: 533 ACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
AC A L +G +H ++ GL + AL
Sbjct: 242 ACSALIGLHQGRWMHGSVIKQGLMSNSFISAAL 274
>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+ G++ LP G P+R++++ R+CG
Sbjct: 552 HHSEKLALTFGIMVLPHGAPIRIMKNLRICG 582
>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 867
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLI+ P +P++++++ R+CG
Sbjct: 798 HHSERLAIAFGLIATPPEIPIQIVKNLRVCG 828
>gi|410109973|gb|AFV61066.1| pentatricopeptide repeat-containing protein 81, partial
[Citharexylum montevidense]
Length = 366
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 16/94 (17%)
Query: 473 PDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLC 531
DLV+W+++L+ G S NG AL LFQ M +DY+ +++T +
Sbjct: 207 KDLVSWNTILT---------------GLSXNGLSENALRLFQQMHLDYLVLDQYTFAAVL 251
Query: 532 SACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
+C L+ G ++H +++G E A AL
Sbjct: 252 RSCSDLATLQLGRQIHVLAVKSGFEGNEYVASAL 285
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 17/111 (15%)
Query: 439 AARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVIS 498
++ RDV++ I YV I D I D+V+W+++ IS
Sbjct: 150 SSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAM---------------IS 194
Query: 499 GFSLNGWYAEALGLF-QTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELH 547
G+ G Y EAL LF + M + + +E T + + SAC D + G +H
Sbjct: 195 GYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVH 245
>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Vitis vinifera]
Length = 594
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+ G++ LP G P+R++++ R+CG
Sbjct: 525 HHSEKLALTFGIMVLPHGAPIRIMKNLRICG 555
>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
HH+E AVA GLI+ P G P+RV ++ R+C
Sbjct: 717 HHSEKLAVAFGLIATPPGAPIRVKKNLRIC 746
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
HH+E A+A GLIS G P+R+I++ R+C
Sbjct: 665 HHSEKLAIAFGLISTKPGTPIRIIKNLRVC 694
>gi|326515404|dbj|BAK03615.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E A+A GLIS P P+R+I++ R+CG
Sbjct: 468 LYHSERLAIAYGLISTPARTPLRIIKNLRICG 499
>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
Length = 770
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 514 QTMRVDYIEANEFTIDLCSACLAGDD---LRKGGELHHKTLRTGLHHTEMKAVALGLISL 570
Q+ R+ Y++ E +I L A D L E H + + + H+E A+A GLI+
Sbjct: 659 QSDRI-YLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILS--QHSERLAIAFGLIAT 715
Query: 571 PDGMPVRVIRSARMCG 586
P G P++++++ R+CG
Sbjct: 716 PPGTPIQIVKNLRVCG 731
>gi|115446089|ref|NP_001046824.1| Os02g0468800 [Oryza sativa Japonica Group]
gi|47497329|dbj|BAD19370.1| selenium binding protein-like protein [Oryza sativa Japonica Group]
gi|113536355|dbj|BAF08738.1| Os02g0468800 [Oryza sativa Japonica Group]
gi|125582005|gb|EAZ22936.1| hypothetical protein OsJ_06625 [Oryza sativa Japonica Group]
Length = 603
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 18/104 (17%)
Query: 468 DGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT 527
D + ++V W+S+ ISG+ G EAL +F +M IE NE T
Sbjct: 314 DAVHMANVVVWTSM---------------ISGYVEGGHLNEALVMFDSMVCANIEPNEAT 358
Query: 528 I-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALGLISL 570
+ + SAC G ++ + + TGLH VA GLI +
Sbjct: 359 LSSVLSACAKLGSANLGKKVEEQAIATGLHSE--PRVATGLIDM 400
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 23/29 (79%)
Query: 557 HTEMKAVALGLISLPDGMPVRVIRSARMC 585
H+E A+A GL SL +G+P+R++++ R+C
Sbjct: 546 HSEKMAIAFGLFSLKEGLPIRIVKNLRIC 574
>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
Length = 736
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 98/275 (35%), Gaps = 57/275 (20%)
Query: 307 IKEKFEPVG--FVVGFPVGSPEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGT 364
+ E P G FVV V S KD KQ H ++L G L+ Y
Sbjct: 50 VLEGLRPDGAMFVVAIGVCSSSKDL-KQGQLLHAMILETQLLEFDIILGTA--LITMYAR 106
Query: 365 SKNLAKRVKKFVEKDAKN---WSGPGSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPE 421
++L K F E K W+ + S H L + D+ S PE
Sbjct: 107 CRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGAL-------KIYQDMVSK--SPE 157
Query: 422 GCPNYKPPDDKFIARLWAAR-------------RDVINGVVS--------IGEYVCVAEI 460
G KP F + L+A R V +G S I Y +
Sbjct: 158 G---MKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSL 214
Query: 461 LVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDY 520
D +K D++AW+++ ISG++ G +AL LFQ M +
Sbjct: 215 ESARKVFDRLKNRDVIAWNTM---------------ISGYAKQGAATQALELFQRMGPND 259
Query: 521 IEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTG 554
+ N T I L +AC +DL +G +H K G
Sbjct: 260 PKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHG 294
>gi|218190710|gb|EEC73137.1| hypothetical protein OsI_07160 [Oryza sativa Indica Group]
Length = 603
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 18/104 (17%)
Query: 468 DGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT 527
D + ++V W+S+ ISG+ G EAL +F +M IE NE T
Sbjct: 314 DAVHMANVVVWTSM---------------ISGYVEGGHLNEALVMFDSMVCANIEPNEAT 358
Query: 528 I-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALGLISL 570
+ + SAC G ++ + + TGLH VA GLI +
Sbjct: 359 LSSVLSACAKLGSANLGKKVEEQAIATGLHSE--PRVATGLIDM 400
>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 16/114 (14%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFS 501
RDV++ + Y + ++ LD + + V+W +L++ HE+
Sbjct: 311 RDVVSWTALLDVYADLGDLYGARRVLDAMPARNEVSWGTLIARHEQ-------------- 356
Query: 502 LNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554
G AEAL L+ M D N + SAC DLR G +H L+ G
Sbjct: 357 -KGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMG 409
>gi|125541284|gb|EAY87679.1| hypothetical protein OsI_09093 [Oryza sativa Indica Group]
Length = 493
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 22/113 (19%)
Query: 444 VINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLN 503
VI+G++ G E+ DG+ PD V+W++L I G N
Sbjct: 142 VISGLMRNGLVAAAFEVF------DGMPAPDKVSWTAL---------------IDGCVKN 180
Query: 504 GWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGL 555
G + EA+ F+ M +D +E + T I + SAC L G +H +R GL
Sbjct: 181 GRHDEAINCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGL 233
>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
Length = 920
Score = 39.3 bits (90), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTG 554
+ISGF + Y +AL +F M + N FT I SA D+++G ++H + ++TG
Sbjct: 519 LISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTG 578
Query: 555 LHHTEMKAVALGLISL 570
HT VA LISL
Sbjct: 579 --HTSETEVANALISL 592
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 65/137 (47%), Gaps = 32/137 (23%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
DG+ ++V+W+SL++ +E+ NG +AL +F M + +E +E
Sbjct: 209 FDGMAVRNIVSWNSLITCYEQ---------------NGPAGKALEVFVMMMDNGVEPDEI 253
Query: 527 TI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALGLISLP-------------D 572
T+ + SAC + +R+G ++H + ++ + ++ + L+ + D
Sbjct: 254 TLASVVSACASWSAIREGLQIHARVVKRDKYRNDL-VLGNALVDMYAKCRRVNEARLVFD 312
Query: 573 GMPVR--VIRSARMCGY 587
MP+R V ++ +CGY
Sbjct: 313 RMPLRNVVSETSMVCGY 329
>gi|326528345|dbj|BAJ93354.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 609
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 456 CVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVL---VISGFSLNGWYAEALGL 512
C ++LV +D + +A + + R VV+ +ISG+ +G AEA+GL
Sbjct: 350 CREDVLVNTALIDMYAKSGSIAHARRVFEQMHAQERDVVVWSALISGYGAHGHLAEAVGL 409
Query: 513 FQTMRVDYIEANEFT-IDLCSACLAGDDLRKG 543
F+ M++ ++ N+ T + L SAC + KG
Sbjct: 410 FEDMKLAGVKPNDVTFLGLLSACNHAGAVEKG 441
>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
Length = 601
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 23/125 (18%)
Query: 435 ARLWAARRDVINGVVSIG---EYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASR 491
A+ W + D+ N +V YV I D + R D+VAWS++
Sbjct: 232 AKAWVSEEDLQNVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTM---------- 281
Query: 492 RVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSAC--LAGDDLRK--GGEL 546
I+G+S NG E+L LF+ M+ + NE T + + SAC L D+L + G +
Sbjct: 282 -----IAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYI 336
Query: 547 HHKTL 551
+TL
Sbjct: 337 ESQTL 341
>gi|125532999|gb|EAY79564.1| hypothetical protein OsI_34697 [Oryza sativa Indica Group]
Length = 529
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 16/96 (16%)
Query: 466 FLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANE 525
D + + ++++W+SL+ G+ +G AEAL +FQ + + + ++
Sbjct: 283 LFDQMPKKNILSWNSLME---------------GYVRHGQEAEALSIFQHLIKEGVHPDQ 327
Query: 526 FTIDLC-SACLAGDDLRKGGELHHKTLRTGLHHTEM 560
T C AC A L+ G ++H + LRTG + M
Sbjct: 328 ITFSSCFRACAAVCALKCGQQIHGRLLRTGFYPNVM 363
>gi|18854997|gb|AAL79689.1|AC087599_8 hypothetical protein [Oryza sativa Japonica Group]
gi|31433572|gb|AAP55070.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125575734|gb|EAZ17018.1| hypothetical protein OsJ_32505 [Oryza sativa Japonica Group]
Length = 529
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 16/96 (16%)
Query: 466 FLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANE 525
D + + ++++W+SL+ G+ +G AEAL +FQ + + + ++
Sbjct: 283 LFDQMPKKNILSWNSLME---------------GYVRHGQEAEALSIFQHLIKEGVHPDQ 327
Query: 526 FTIDLC-SACLAGDDLRKGGELHHKTLRTGLHHTEM 560
T C AC A L+ G ++H + LRTG + M
Sbjct: 328 ITFSSCFRACAAVCALKCGQQIHGRLLRTGFYPNVM 363
>gi|325294689|ref|YP_004281203.1| Holliday junction resolvase [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325065137|gb|ADY73144.1| Holliday junction resolvase [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 141
Score = 39.3 bits (90), Expect = 6.6, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 267 IVALDVGKKYTGVAVWHQGMEDIEAESTFFMEDMEE---QMLNIKEKFEPVGFVVGFPVG 323
++ALDVG K G+AV + S + + +E ++L + EK + ++G P+
Sbjct: 4 VMALDVGFKKIGIAVSDPLLLTANPHSIIYRKSNKETFSKLLELIEKLDVGKIIIGIPIS 63
Query: 324 SPEKDTPKQFSQAHVKAFLSKLDSLPNFKG--MPICLVNEYGTSKNLAKRVKKFVEKDAK 381
S K+T +K F KLDS +G + I ++E +S AK + +F+ K K
Sbjct: 64 SEGKETKM---AEKIKKFALKLDSFLKERGKKIEIVFIDESYSSLE-AKELCRFLGKTEK 119
>gi|46805412|dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215704291|dbj|BAG93131.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 527
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 22/113 (19%)
Query: 444 VINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLN 503
VI+G++ G E+ DG+ PD V+W++L I G N
Sbjct: 176 VISGLMRNGLVAAAFEVF------DGMPAPDKVSWTAL---------------IDGCVKN 214
Query: 504 GWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGL 555
G + EA+ F+ M +D +E + T I + SAC L G +H +R GL
Sbjct: 215 GRHDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGL 267
>gi|255559140|ref|XP_002520592.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540252|gb|EEF41825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 525
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 441 RRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGF 500
++D+++ + Y V ++ L + +LV+W+SL ISGF
Sbjct: 347 KKDIVSWNTMVAAYAQVGQMERALKVFKEMGERNLVSWNSL---------------ISGF 391
Query: 501 SLNGWYAEALGLFQTMRVDYIEANEFTIDLC-SACLAGDDLRKGGELHHKTLRTG 554
L+G Y +AL F M+ + + ++ T S+C L+ G +LHH +++G
Sbjct: 392 MLHGMYLDALWCFVLMQHEGKKPDQSTFACALSSCAIVAALQVGRQLHHLVIKSG 446
>gi|224094823|ref|XP_002310252.1| predicted protein [Populus trichocarpa]
gi|222853155|gb|EEE90702.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 482 LSVHEEWASRRVVL---VISGFSLNGWYAEALGLFQTMRVDYIEANEFTIDLCS---ACL 535
+ V EE R VV ++S F +G EALG+F+ MR + +E EFT LCS AC
Sbjct: 147 VKVFEEMEFRDVVTWNALVSSFLRHGLAKEALGVFRAMRRESVEITEFT--LCSVLKACA 204
Query: 536 AGDDLRKGGELHHKTLRTG 554
R+G ++H + G
Sbjct: 205 FIKAFRQGKQVHGLVIVMG 223
>gi|225441064|ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g03800-like [Vitis vinifera]
Length = 882
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 27/125 (21%)
Query: 469 GIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT- 527
G+ P++V+++++ ISGF+ + +A+ +F MR IE NEF+
Sbjct: 130 GLSCPNVVSYTAM---------------ISGFAKSNRERQAMEIFFRMRSSGIELNEFSF 174
Query: 528 IDLCSACLAGDDLRKGGELHHKTLRTG-LHHTEMKAVALGL----------ISLPDGMPV 576
+ + + C+ DL G +LH ++ G L++T + +GL + L D MP
Sbjct: 175 VAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPH 234
Query: 577 RVIRS 581
R I S
Sbjct: 235 RDIAS 239
>gi|190612909|gb|ACE80832.1| pentatricopeptide repeat protein [Haplomitrium mnioides]
Length = 148
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
HH+E A+A GLIS P G P+R+ ++ R+C
Sbjct: 86 HHSEKLAIAFGLISTPAGTPLRIYKNLRVC 115
>gi|147864762|emb|CAN84062.1| hypothetical protein VITISV_010661 [Vitis vinifera]
Length = 641
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+ G++ LP G P+R++++ R+CG
Sbjct: 552 HHSEKLALTFGIMVLPHGAPIRIMKNLRICG 582
>gi|413924390|gb|AFW64322.1| hypothetical protein ZEAMMB73_176484 [Zea mays]
Length = 496
Score = 38.9 bits (89), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 16/89 (17%)
Query: 468 DGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT 527
DG+ PD V+W++L I GF NG + EA+ F+ M +D +E + T
Sbjct: 162 DGMPGPDKVSWTAL---------------IDGFVKNGRHDEAIDCFRAMLLDGVETDYIT 206
Query: 528 -IDLCSACLAGDDLRKGGELHHKTLRTGL 555
+ + SAC L G +H LR L
Sbjct: 207 LVAVVSACAEVGALGLGMWVHRLVLRQRL 235
>gi|358357204|gb|AEU08442.1| pentatricopeptide repeat protein [Takakia lepidozioides]
Length = 151
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GLI P G +RVI++ R+CG
Sbjct: 89 HHSEKLAIAFGLICTPPGTLIRVIKNLRVCG 119
>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 647
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Query: 538 DDLRKGGELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
DD KG +L L H+E A+A +++LP G P+R+ ++ R+CG
Sbjct: 568 DDEEKGDQL--------LEHSEKLALAYAILTLPPGAPIRITKNLRICG 608
>gi|190612751|gb|ACE80753.1| pentatricopeptide repeat protein [Metzgeria furcata]
Length = 152
Score = 38.9 bits (89), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 557 HTEMKAVALGLISLPDGMPVRVIRSARMCG 586
H+E A+A GLIS P G P+R+ ++ R+CG
Sbjct: 91 HSEKLAIAYGLISTPPGTPLRIFKNLRVCG 120
>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
Length = 929
Score = 38.9 bits (89), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 38/163 (23%)
Query: 394 SFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGE 453
S +T++ + K+ L+ ISD+ S + P+ W A +I+G G+
Sbjct: 264 SGYTSKGEFKKALK-CISDMKLSGVKPDQVT-------------WNA---IISGYAQSGQ 306
Query: 454 YVCVAEILVMLLFLDGIK--RPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALG 511
+ E L + G+K +P++V+W++L I+G NG+ EAL
Sbjct: 307 F---EEASKYFLEMGGLKDFKPNVVSWTAL---------------IAGSEQNGYDFEALS 348
Query: 512 LFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRT 553
+F+ M ++ ++ N TI SAC LR G E+H ++
Sbjct: 349 VFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKV 391
>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 38.9 bits (89), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 539 DLRKGGE-LHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
DL + GE + + LR HH+E A +GL+ LP P+R++++ R+CG
Sbjct: 554 DLHQVGESIKQELLR---HHSEKLAFTMGLLFLPPNAPIRIMKNLRICG 599
>gi|413948598|gb|AFW81247.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 788
Score = 38.9 bits (89), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMR--VDYIEANEFTI-DL 530
D+V+WS+ +ISG++ G E+ LF MR NEFT+ L
Sbjct: 325 DVVSWST---------------IISGYTQEGLAEESFALFSEMRHHSSCPRPNEFTLASL 369
Query: 531 CSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
S C + L G +LH + GL H M AL
Sbjct: 370 FSVCASAASLDTGRQLHALAVAAGLEHHAMVRSAL 404
>gi|358357236|gb|AEU08458.1| pentatricopeptide repeat protein [Takakia lepidozioides]
Length = 152
Score = 38.9 bits (89), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E A+A GLI P G P+R+I++ R+CG
Sbjct: 90 YHSEKLAIAFGLIKTPPGTPLRIIKNLRVCG 120
>gi|293334013|ref|NP_001167864.1| pentatricopeptide repeat (PPR) superfamily protein [Zea mays]
gi|223944527|gb|ACN26347.1| unknown [Zea mays]
gi|413946729|gb|AFW79378.1| pentatricopeptide repeat (PPR) superfamily protein [Zea mays]
Length = 578
Score = 38.9 bits (89), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
L+H+E A+A GLIS P P+R+I++ R+CG
Sbjct: 508 LYHSERLAIAYGLISTPARTPLRIIKNLRICG 539
>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 685
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E AVA GLIS G +RV+++ R+CG
Sbjct: 616 HHSEKLAVAFGLISTDHGQVIRVVKNLRVCG 646
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
+H+E AVA G++++P G P+RVI++ R+C
Sbjct: 697 YHSEKLAVAFGILAIPAGRPIRVIKNLRVC 726
>gi|147833266|emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
Length = 1009
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 27/141 (19%)
Query: 441 RRDVINGVVSIGEYV-----CVAEILVMLLFLDGIKRPDLVAWSSLLS------------ 483
RDV++ I Y+ A+ + L+ LDG+K PDL++WS+LLS
Sbjct: 246 ERDVVSWTALISAYMEEGLXDEAKHIFHLMQLDGVK-PDLISWSALLSGFARNGEIDLAL 304
Query: 484 -VHEEWASRRVVL-------VISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSAC 534
EE R + +ISG NG+ +AL +F M + N TI + AC
Sbjct: 305 ETLEEMPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPAC 364
Query: 535 LAGDDLRKGGELHHKTLRTGL 555
LR G +H + G+
Sbjct: 365 TGLKALRLGKAIHXIAXKHGI 385
>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Glycine max]
Length = 674
Score = 38.9 bits (89), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 24/30 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
HH+E A+A L++ P+G+P+RV+++ R+C
Sbjct: 605 HHSEKLAIAFALMNTPEGVPIRVMKNLRVC 634
>gi|119471096|ref|XP_001258126.1| C6 transcription factor, putative [Neosartorya fischeri NRRL 181]
gi|119406278|gb|EAW16229.1| C6 transcription factor, putative [Neosartorya fischeri NRRL 181]
Length = 649
Score = 38.9 bits (89), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 18/126 (14%)
Query: 112 WQGKESIDEGRFITKCAEEAMLHIKRRHNPFGIVLRYQVGDTPTKQFLFALDASTNFKGM 171
W+ + ++ R++T ++M + RH + + + + T Q +F +
Sbjct: 176 WEKQRALSSNRYLTSMLPQSMFELPDRH---AVEVHFDIFRTTLMQRVFPIVD------- 225
Query: 172 PICFAHNSGTSNSHPSFDQKSVNVDASLVALVQLSSSM--------PIAGPPLDTSQLDI 223
PI F + SH S + +V A +++ + SS + P+ PP+D+ L +
Sbjct: 226 PILFPDTIKAAYSHSSVSARRADVRACILSFLAFSSILQVPEYKDRPLGLPPIDSEGLAL 285
Query: 224 KLQPLM 229
K Q L+
Sbjct: 286 KAQCLI 291
>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 539 DLRKGGE-LHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
DL + GE + + LR HH+E A +GL+ LP P+R++++ R+CG
Sbjct: 554 DLHQVGESIKQELLR---HHSEKLAFTMGLLFLPPNAPIRIMKNLRICG 599
>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
Length = 630
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A A GLISLP +P+ + ++ R+CG
Sbjct: 561 HHSEKLAFAFGLISLPPNIPITIYKNLRICG 591
>gi|190612861|gb|ACE80808.1| pentatricopeptide repeat protein [Pinus nigra]
Length = 153
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GL++ P G +RV+++ R+CG
Sbjct: 91 HHSEKLAIAFGLLNTPPGTTIRVVKNLRVCG 121
>gi|297740028|emb|CBI30210.3| unnamed protein product [Vitis vinifera]
Length = 900
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 27/125 (21%)
Query: 469 GIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT- 527
G+ P++V+++++ ISGF+ + +A+ +F MR IE NEF+
Sbjct: 148 GLSCPNVVSYTAM---------------ISGFAKSNRERQAMEIFFRMRSSGIELNEFSF 192
Query: 528 IDLCSACLAGDDLRKGGELHHKTLRTG-LHHTEMKAVALGL----------ISLPDGMPV 576
+ + + C+ DL G +LH ++ G L++T + +GL + L D MP
Sbjct: 193 VAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPH 252
Query: 577 RVIRS 581
R I S
Sbjct: 253 RDIAS 257
>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 972
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 38/163 (23%)
Query: 394 SFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGE 453
S +T++ + K+ L+ ISD+ S + P+ W A +I+G G+
Sbjct: 264 SGYTSKGEFKKALK-CISDMKLSGVKPDQVT-------------WNA---IISGYAQSGQ 306
Query: 454 YVCVAEILVMLLFLDGIK--RPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALG 511
+ E L + G+K +P++V+W++L I+G NG+ EAL
Sbjct: 307 F---EEASKYFLEMGGLKDFKPNVVSWTAL---------------IAGSEQNGYDFEALS 348
Query: 512 LFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRT 553
+F+ M ++ ++ N TI SAC LR G E+H ++
Sbjct: 349 VFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKV 391
>gi|358357140|gb|AEU08410.1| pentatricopeptide repeat protein [Frullania tamarisci]
Length = 152
Score = 38.9 bits (89), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 557 HTEMKAVALGLISLPDGMPVRVIRSARMCG 586
H+E A+A GLI+ P G P+R+ ++ R+CG
Sbjct: 91 HSEKLAIAFGLINTPPGTPIRIFKNLRVCG 120
>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Vitis vinifera]
Length = 847
Score = 38.9 bits (89), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 466 FLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANE 525
DG+ P L +W+++LS G+S N + EA+ LF+ M+ + +
Sbjct: 375 MFDGMSSPSLSSWNTILS---------------GYSQNENHKEAVKLFREMQFRSVHPDR 419
Query: 526 FTIDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALGLISL 570
T+ + + LAG L +GG H + + T++ +A GLI +
Sbjct: 420 TTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIY-LASGLIGM 463
>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Glycine max]
Length = 911
Score = 38.9 bits (89), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 22/129 (17%)
Query: 458 AEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVL--------------------VI 497
AE L++ + +GIK DLV W+SL+S + L +I
Sbjct: 453 AEKLLIQMKEEGIK-ADLVTWNSLVSGYSMSGCSEEALAVINRIKSLGLTPNVVSWTAMI 511
Query: 498 SGFSLNGWYAEALGLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGGELHHKTLRTGLH 556
SG N Y +AL F M+ + ++ N TI L AC L+KG E+H +++ G
Sbjct: 512 SGCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRACAGPSLLKKGEEIHCFSMKHGFV 571
Query: 557 HTEMKAVAL 565
A AL
Sbjct: 572 DDIYIATAL 580
>gi|358357208|gb|AEU08444.1| pentatricopeptide repeat protein [Takakia lepidozioides]
Length = 152
Score = 38.9 bits (89), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E A+A GLI+ P G P+ VI++ R+CG
Sbjct: 90 YHSEKLAIAFGLITTPPGTPIHVIKNLRVCG 120
>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Brachypodium distachyon]
Length = 647
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 24/30 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
HH+E A+A ++LP+G+P+RV+++ R+C
Sbjct: 578 HHSEKLAIAFAFLNLPEGVPIRVMKNLRVC 607
>gi|255581953|ref|XP_002531775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528611|gb|EEF30631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 22/116 (18%)
Query: 440 ARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISG 499
A+ +I+G +S G +V A + D +K D+ +WS+ +I+G
Sbjct: 155 AKNSMISGYLSKG-HVDKARAM-----FDQMKAKDVASWSA---------------IITG 193
Query: 500 FSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTG 554
+ NG + EAL LF+ M V + NE + L SAC L +G +H R G
Sbjct: 194 CTKNGMHTEALALFEDMMVSHTLPNESALVSLLSACAHLGALHQGRWIHAYIDRIG 249
>gi|190612769|gb|ACE80762.1| pentatricopeptide repeat protein [Pellia epiphylla]
Length = 152
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 557 HTEMKAVALGLISLPDGMPVRVIRSARMCG 586
H+E A+A GL+S P G P+R++++ R+CG
Sbjct: 91 HSEKLAIAFGLMSTPSGTPLRILKNLRVCG 120
>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 641
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E AVA G+I+ P+G P++V ++ R+CG
Sbjct: 572 YHSERLAVAFGIIATPEGSPIKVFKNLRICG 602
>gi|190612779|gb|ACE80767.1| pentatricopeptide repeat protein [Ptilidium pulcherrimum]
Length = 152
Score = 38.9 bits (89), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 557 HTEMKAVALGLISLPDGMPVRVIRSARMCG 586
H+E A+A GLIS P G P+R+ ++ R+CG
Sbjct: 91 HSEKLAIAFGLISTPPGTPLRIFKNLRVCG 120
>gi|255553939|ref|XP_002518010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542992|gb|EEF44528.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 824
Score = 38.9 bits (89), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 21/83 (25%)
Query: 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANE----FTID 529
DL++W++ +ISGF+ NG ++++L LFQ + Y+E+NE +
Sbjct: 248 DLISWNA---------------IISGFASNGEWSKSLELFQELL--YLESNEPDSVTLVS 290
Query: 530 LCSACLAGDDLRKGGELHHKTLR 552
+ AC +L+ G E+H LR
Sbjct: 291 ILPACAQLQNLKAGREIHSYVLR 313
>gi|410109999|gb|AFV61079.1| pentatricopeptide repeat-containing protein 81, partial [Lantana
trifolia]
Length = 391
Score = 38.9 bits (89), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 16/97 (16%)
Query: 470 IKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI- 528
I DLV+W+++L+ G S NG AL LFQ + VD++ +++T
Sbjct: 224 INVKDLVSWNTILT---------------GXSQNGLSENALRLFQNIHVDHLVIDQYTFA 268
Query: 529 DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
+ +C L G ++H +++GL E A AL
Sbjct: 269 AVLRSCSDLATLXLGRQIHVLVVKSGLEGNEYXASAL 305
>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Brachypodium distachyon]
Length = 750
Score = 38.9 bits (89), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
HH+E A+A GLI +P MP+R++++ R+C
Sbjct: 681 HHSEKLAIAFGLIFVPPEMPIRIVKNLRVC 710
>gi|15237290|ref|NP_200097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171558|sp|Q9FLX6.1|PP430_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g52850, chloroplastic; Flags: Precursor
gi|10177099|dbj|BAB10433.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332008885|gb|AED96268.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 893
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 460 ILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRV---VLVISGFSLNGWYAEALGLFQTM 516
+L + L DGI W++ + +E + R V ++IS F+ + +A AL LF+ M
Sbjct: 64 LLSLYLKTDGI-------WNAR-KLFDEMSHRTVFAWTVMISAFTKSQEFASALSLFEEM 115
Query: 517 RVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
NEFT + +C D+ GG +H ++TG + +L
Sbjct: 116 MASGTHPNEFTFSSVVRSCAGLRDISYGGRVHGSVIKTGFEGNSVVGSSL 165
>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
Length = 801
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 552 RTGLHHTEMKAVALGLISLPDGMPVRVIRSARMC 585
R + H+E A+A GL+S P G P+RVI++ R+C
Sbjct: 728 RLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVC 761
>gi|302809659|ref|XP_002986522.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
gi|300145705|gb|EFJ12379.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
Length = 625
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Query: 468 DGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT 527
DGI+ D W+++ ISG +G EALGLF+ M+ + + ++ +
Sbjct: 164 DGIQSVDPSPWNAM---------------ISGLVQHGRAREALGLFERMKAESVRIDKVS 208
Query: 528 -IDLCSACLAGDDLRKGGELHHKTLRTGL 555
+ + SAC A +DL +G +H G+
Sbjct: 209 YLTILSACCALEDLHEGIRIHEHASACGM 237
>gi|300692309|ref|YP_003753304.1| Holliday junction resolvase [Ralstonia solanacearum PSI07]
gi|299079369|emb|CBJ52041.1| Holliday junction resolvase [Ralstonia solanacearum PSI07]
gi|344173867|emb|CCA89053.1| Holliday junction resolvase [Ralstonia syzygii R24]
Length = 144
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 266 TIVALDVGKKYTGVAVWH---QGMEDIEAESTFFMEDMEEQMLNIKEKFEPVGFVVGFPV 322
T++A D G+K GVA+ + + +E S +E Q+ + +++PVGFVVG PV
Sbjct: 17 TLLAFDYGEKRIGVALGNSITRSARALEVISNRSVEYRFTQITRLVSEWQPVGFVVGMPV 76
Query: 323 GSPEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTS 365
+D P +K + L G+P+ V+E +S
Sbjct: 77 HPEGEDQPM------IKLAKRFGNQLHGRYGLPVTWVDERYSS 113
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 38.9 bits (89), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMC 585
+H+E AVA G++++P G P+RVI++ R+C
Sbjct: 616 YHSEKLAVAFGILAIPAGRPIRVIKNLRVC 645
>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
Length = 768
Score = 38.5 bits (88), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 16/105 (15%)
Query: 466 FLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANE 525
DG+ P L +W+++LS G+S N + EA+ LF+ M+ + +
Sbjct: 346 MFDGMSSPSLSSWNTILS---------------GYSQNENHKEAVKLFREMQFRSVHPDR 390
Query: 526 FTIDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALGLISL 570
T+ + + LAG L +GG H + + T++ +A GLI +
Sbjct: 391 TTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIY-LASGLIGM 434
>gi|242095216|ref|XP_002438098.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
gi|241916321|gb|EER89465.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
Length = 596
Score = 38.5 bits (88), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E A+A GLIS P G +RVI++ R+CG
Sbjct: 527 YHSEKLAIAFGLISTPPGETIRVIKNLRICG 557
>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
Length = 920
Score = 38.5 bits (88), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTG 554
+ISGF + Y +AL +F M + N FT I SA D+++G ++H + ++TG
Sbjct: 519 LISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTG 578
Query: 555 LHHTEMKAVALGLISL 570
HT VA LISL
Sbjct: 579 --HTSETEVANALISL 592
>gi|358357216|gb|AEU08448.1| pentatricopeptide repeat protein [Takakia lepidozioides]
Length = 152
Score = 38.5 bits (88), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E A A GL+S P G P+R++++ R+CG
Sbjct: 90 YHSERLATAYGLLSTPPGTPIRIMKNLRICG 120
>gi|302759917|ref|XP_002963381.1| hypothetical protein SELMODRAFT_80412 [Selaginella moellendorffii]
gi|300168649|gb|EFJ35252.1| hypothetical protein SELMODRAFT_80412 [Selaginella moellendorffii]
Length = 860
Score = 38.5 bits (88), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 18/105 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
DG K D+++W+SL I+ +S + EAL +F +M ++ +E N
Sbjct: 391 FDGFKARDVISWTSL---------------ITAYSHENFGREALEVFHSMELEGVEPNSI 435
Query: 527 TI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALGLISL 570
T + AC L G LH + + TG H + V L+S+
Sbjct: 436 TFCTVIDACSRLSSLLPGRALHSRVVATG--HISDEFVGNALVSM 478
>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1176
Score = 38.5 bits (88), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTG 554
++SGF+ +G + EAL +F M ++ N FT + SA ++++G ++H + ++TG
Sbjct: 518 LVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTG 577
Query: 555 LHHTEMKAVALGLISL 570
H+ V LISL
Sbjct: 578 --HSFETEVGNALISL 591
>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
Length = 935
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 552 RTGLHHTEMKAVALGLISLPDGMPVRVIRSARMC 585
R + H+E A+A GL+S P G P+RVI++ R+C
Sbjct: 862 RLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVC 895
>gi|302820671|ref|XP_002992002.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
gi|300140244|gb|EFJ06970.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
Length = 620
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 17/98 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEE---WASRRVVL-------------VISGFSLNGWYAEAL 510
DG+ D+V+W+++L+V+ + W+ V VI+ N + +AL
Sbjct: 68 FDGMLLRDVVSWTAMLAVYAQNGCWSQALHVFEAMPRKDDVSWNAVINASVGNSKFQDAL 127
Query: 511 GLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELH 547
LF M ++ + +NEFT + L AC +DL+ ++H
Sbjct: 128 ELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIH 165
>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
Length = 1151
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTG 554
++SGF+ +G + EAL +F M ++ N FT + SA ++++G ++H + ++TG
Sbjct: 518 LVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTG 577
Query: 555 LHHTEMKAVALGLISL 570
H+ V LISL
Sbjct: 578 --HSFETEVGNALISL 591
>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
Length = 1175
Score = 38.5 bits (88), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTG 554
++SGF+ +G + EAL +F M ++ N FT + SA ++++G ++H + ++TG
Sbjct: 518 LVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTG 577
Query: 555 LHHTEMKAVALGLISL 570
H+ V LISL
Sbjct: 578 --HSFETEVGNALISL 591
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 38.5 bits (88), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRT 553
++ISG++ G EA LF M+ + +E ++FT + + SAC + L G E+H + +
Sbjct: 115 VMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEA 174
Query: 554 GLHHTEMKAVALGLISL 570
GL + V LIS+
Sbjct: 175 GLANN--ATVGNALISM 189
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,230,407,882
Number of Sequences: 23463169
Number of extensions: 389164579
Number of successful extensions: 786158
Number of sequences better than 100.0: 618
Number of HSP's better than 100.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 382
Number of HSP's that attempted gapping in prelim test: 784770
Number of HSP's gapped (non-prelim): 1701
length of query: 587
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 439
effective length of database: 8,886,646,355
effective search space: 3901237749845
effective search space used: 3901237749845
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.4 bits)