BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007864
(587 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C507|PP111_ARATH Putative pentatricopeptide repeat-containing protein At1g69350,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3
SV=1
Length = 787
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 470 IKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-I 528
IK +V W+S+L GFS NG EA+ LF M Y+E NE T +
Sbjct: 465 IKHRSVVTWNSMLC---------------GFSQNGNSVEAISLFDYMYHSYLEMNEVTFL 509
Query: 529 DLCSACLAGDDLRKGGELHHKTLRTGL 555
+ AC + L KG +HHK + +GL
Sbjct: 510 AVIQACSSIGSLEKGKWVHHKLIISGL 536
Score = 33.1 bits (74), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 16/81 (19%)
Query: 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCS 532
++VAW+SL+S+ +A R +V+ +ALGLF+ M I+ + FT+ S
Sbjct: 369 NIVAWNSLISL---YAHRGMVI------------QALGLFRQMVTQRIKPDAFTLASSIS 413
Query: 533 ACLAGDDLRKGGELHHKTLRT 553
AC + G ++H +RT
Sbjct: 414 ACENAGLVPLGKQIHGHVIRT 434
>sp|Q9FJY9|PP448_ARATH Pentatricopeptide repeat-containing protein At5g66500,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E38 PE=2
SV=1
Length = 532
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 16/88 (18%)
Query: 468 DGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT 527
+ ++ DLV+W++LLS GF NG EALG+F M + +E +EFT
Sbjct: 143 ESVEEKDLVSWNALLS---------------GFLRNGKGKEALGVFAAMYRERVEISEFT 187
Query: 528 I-DLCSACLAGDDLRKGGELHHKTLRTG 554
+ + C + L++G ++H + TG
Sbjct: 188 LSSVVKTCASLKILQQGKQVHAMVVVTG 215
>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2
SV=1
Length = 866
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 18/114 (15%)
Query: 443 DVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSL 502
DV+N ++++ YV ++ L D + R D+++W+++ ISG+
Sbjct: 232 DVVNALITM--YVKCGDVKSARLLFDRMPRRDIISWNAM---------------ISGYFE 274
Query: 503 NGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
NG E L LF MR ++ + T+ + SAC D R G ++H + TG
Sbjct: 275 NGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGF 328
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 470 IKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI- 528
++R D+V+W+++ ISG+ N +A+ ++ M D ++ +E T+
Sbjct: 358 MERKDIVSWTTM---------------ISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVA 402
Query: 529 DLCSACLAGDDLRKGGELHHKTLRTGL 555
+ SAC DL G ELH ++ L
Sbjct: 403 AVLSACATLGDLDTGVELHKLAIKARL 429
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 557 HTEMKAVALGLISLPDGMPVRVIRSARMC 585
H+E KA+A GLI+ GMP+ V ++ MC
Sbjct: 800 HSERKAIAFGLINTVPGMPIWVTKNLSMC 828
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
H+E AVA GL+ LP+G+P+RV+++ R+CG
Sbjct: 635 RHSERLAVAYGLLKLPEGVPIRVMKNLRVCG 665
Score = 33.1 bits (74), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 16/105 (15%)
Query: 443 DVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSL 502
DV V + YV E++ L D D++ W+S +ISG++
Sbjct: 365 DVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNS---------------IISGYAS 409
Query: 503 NGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGEL 546
+G EAL +F M N+ T I + +AC L +G E+
Sbjct: 410 HGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEI 454
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 16/90 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
D + DLVAW+S VI+GF+ NG EAL L+ M I+ + F
Sbjct: 179 FDKMPEKDLVAWNS---------------VINGFAENGKPEEALALYTEMNSKGIKPDGF 223
Query: 527 TI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
TI L SAC L G +H ++ GL
Sbjct: 224 TIVSLLSACAKIGALTLGKRVHVYMIKVGL 253
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 41.6 bits (96), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 22/127 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
D ++R D V+W+++++ HE+ NG E L LF +M IE +EF
Sbjct: 440 FDEMRRRDAVSWNAIIAAHEQ---------------NGKGYETLFLFVSMLRSRIEPDEF 484
Query: 527 TIDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL-------GLISLPDGMPVRVI 579
T G L G E+H +++G+ +L G+I + + R
Sbjct: 485 TFGSILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFF 544
Query: 580 RSARMCG 586
+ A + G
Sbjct: 545 QRANVSG 551
>sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protein At1g74600,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2
SV=1
Length = 895
Score = 41.6 bits (96), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 488 WASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGEL 546
WAS +ISGF+ G+ EA+GLF M D +E T+ + + C + L +G E+
Sbjct: 519 WAS-----MISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEI 573
Query: 547 HHKTLRTGL 555
H TLR G+
Sbjct: 574 HGYTLRAGI 582
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 41.6 bits (96), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 18/94 (19%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFS 501
R V N +V + Y +L+ + D I DLV+W+ ++I+G+
Sbjct: 534 RHVANSLVDM--YAKCGALLLAHMLFDDIASKDLVSWT---------------VMIAGYG 576
Query: 502 LNGWYAEALGLFQTMRVDYIEANEFT-IDLCSAC 534
++G+ EA+ LF MR IEA+E + + L AC
Sbjct: 577 MHGFGKEAIALFNQMRQAGIEADEISFVSLLYAC 610
>sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3
SV=1
Length = 689
Score = 41.6 bits (96), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 16/83 (19%)
Query: 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCS 532
D+VAW+S +ISGFS NG EAL LF M + + N T+ L S
Sbjct: 407 DIVAWNS---------------IISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFS 451
Query: 533 ACLAGDDLRKGGELHHKTLRTGL 555
AC + L G LH +++ G
Sbjct: 452 ACASLGSLAVGSSLHAYSVKLGF 474
Score = 35.8 bits (81), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 16/88 (18%)
Query: 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCS 532
DLV W+++ I G++ NG EAL LFQ M+ I+ N TI + S
Sbjct: 307 DLVMWTAM---------------IVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLS 351
Query: 533 ACLAGDDLRKGGELHHKTLRTGLHHTEM 560
C ++L G +H +++ G+ T +
Sbjct: 352 GCGLIENLELGRSVHGLSIKVGIWDTNV 379
>sp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g05240
OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2
Length = 565
Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 16/95 (16%)
Query: 454 YVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLF 513
Y+C E+ L + I + ++VAW SL ISGF N +++A+ F
Sbjct: 152 YMCCGEVNYGLRVFEDIPQWNVVAWGSL---------------ISGFVNNNRFSDAIEAF 196
Query: 514 QTMRVDYIEANE-FTIDLCSACLAGDDLRKGGELH 547
+ M+ + ++ANE +DL AC D+ G H
Sbjct: 197 REMQSNGVKANETIMVDLLVACGRCKDIVTGKWFH 231
>sp|A0M3P4|RUVX_GRAFK Putative Holliday junction resolvase OS=Gramella forsetii (strain
KT0803) GN=GFO_2274 PE=3 SV=1
Length = 135
Score = 40.4 bits (93), Expect = 0.035, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 23/109 (21%)
Query: 267 IVALDVGKKYTGVAVWHQ------GMEDIEA-ESTFFMEDMEEQMLNIKEKFEPVGFVVG 319
I+ALD G K TGVAV + G+ ++ E F+ED + EK E V
Sbjct: 4 ILALDYGTKRTGVAVTDELKMIASGLTTVQTPELIKFLEDYFKN-----EKVERV----- 53
Query: 320 FPVGSPEK--DTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSK 366
VG P++ DTP Q S+ H++ FL + + F MP+ V+E TSK
Sbjct: 54 -LVGEPKRMDDTPSQ-SEVHIQEFLKEF--VKKFPEMPMERVDERFTSK 98
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 40.4 bits (93), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 552 RTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
R +H+E AVA GL+S P P+RVI++ R+CG
Sbjct: 917 RALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCG 951
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 22/112 (19%)
Query: 444 VINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLN 503
V +G++ + YV ++ D I PD VAW+++ ISG N
Sbjct: 554 VSSGILDM--YVKCGDMSAAQFAFDSIPVPDDVAWTTM---------------ISGCIEN 596
Query: 504 GWYAEALGLFQTMRVDYIEANEFTIDL---CSACLAGDDLRKGGELHHKTLR 552
G A +F MR+ + +EFTI S+CL L +G ++H L+
Sbjct: 597 GEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTA--LEQGRQIHANALK 646
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 40.4 bits (93), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
HH+E A+A GL+SLP +P+R+ ++ R+CG
Sbjct: 615 HHSEKLALAFGLLSLPLSVPIRITKNLRICG 645
>sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 588
Score = 40.4 bits (93), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 3/43 (6%)
Query: 544 GELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
G+ ++T+R +H+E A+A GLI+ P P+RV+++ R+CG
Sbjct: 510 GDEKNQTIR---YHSERLAIAFGLITFPADRPIRVMKNLRVCG 549
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 40.0 bits (92), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVD-YIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRT 553
+ISG++ NG+ +EA+ ++ M + I AN+ T + + AC LR+G +LH + L+
Sbjct: 421 IISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN 480
Query: 554 GLH 556
GL+
Sbjct: 481 GLY 483
>sp|P0C7R1|PPR74_ARATH Pentatricopeptide repeat-containing protein At1g47580,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H50 PE=2
SV=1
Length = 239
Score = 40.0 bits (92), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+HH+E A+A G+I+ P G +RV+++ R+CG
Sbjct: 169 MHHSERLAIAFGIINTPPGTTIRVMKNLRICG 200
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 40.0 bits (92), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 15/61 (24%)
Query: 539 DLRKGGELHHKTLRTGLH-------------HTEMKAVALGLISLPDGMPVRVIRSARMC 585
++RK G H L LH H+E AV GL++ PDG P++VI++ R+C
Sbjct: 663 EMRKSG--HRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRIC 720
Query: 586 G 586
G
Sbjct: 721 G 721
>sp|Q0WNP3|PP319_ARATH Pentatricopeptide repeat-containing protein At4g18520
OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1
Length = 617
Score = 40.0 bits (92), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 80/215 (37%), Gaps = 37/215 (17%)
Query: 358 LVNEYGTSKNLAKRVKKF---VEKDAKNWSGPGSYPSTKSFHTNRLQAKRQLRRFISDVD 414
LV Y L ++ F EKD +W+ S S K + + FI ++
Sbjct: 224 LVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACSRKG------HGIKAIGMFIGMLN 277
Query: 415 SSYLPPE--GCPNYKPPDDKFIARLW----------AARRDVINGVVSIGEYVCVAEILV 462
+LP E C K ++ R + DV G + Y EI
Sbjct: 278 HWFLPNEFTVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISD 337
Query: 463 MLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIE 522
DG+ + V W+S+++ H G+ EA+ LF+ M+ ++
Sbjct: 338 CRKVFDGMSNRNTVTWTSIIAAHAR---------------EGFGEEAISLFRIMKRRHLI 382
Query: 523 ANEFT-IDLCSACLAGDDLRKGGELHHKTLRTGLH 556
AN T + + AC + L G ELH + ++ +
Sbjct: 383 ANNLTVVSILRACGSVGALLLGKELHAQIIKNSIE 417
>sp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g01580
OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2
Length = 660
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 17/133 (12%)
Query: 425 NYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSV 484
NY F+ + D+ G I Y+ ++ L D +++PD+V WSS+
Sbjct: 77 NYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSM--- 133
Query: 485 HEEWASRRVVLVISGFSLNGWYAEALGLFQTMRV--DYIEANEFTIDLCSACLAGDDLRK 542
+SGF NG +A+ F+ M + D I L SAC + R
Sbjct: 134 ------------VSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRL 181
Query: 543 GGELHHKTLRTGL 555
G +H +R G
Sbjct: 182 GRCVHGFVIRRGF 194
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 16/92 (17%)
Query: 465 LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN 524
+ D + +V W+S+ ISG++ NG EALG+F +MR++Y+ +
Sbjct: 250 ILFDKTEVKSVVTWNSM---------------ISGYAANGLDLEALGMFYSMRLNYVRLS 294
Query: 525 EFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
E + + C +LR +LH ++ G
Sbjct: 295 ESSFASVIKLCANLKELRFTEQLHCSVVKYGF 326
Score = 37.7 bits (86), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
H+E A+A GLI+ P G P+ +I++ R+CG
Sbjct: 798 QHSERLAIAFGLIATPKGSPLLIIKNLRVCG 828
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 16/93 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
D +K ++V W++L ISG++ N E L LF M+ + + N F
Sbjct: 151 FDEMKERNVVTWTTL---------------ISGYARNSMNDEVLTLFMRMQNEGTQPNSF 195
Query: 527 TIDLCSACLAGDDL-RKGGELHHKTLRTGLHHT 558
T LA + + +G ++H ++ GL T
Sbjct: 196 TFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKT 228
>sp|Q9FLX6|PP430_ARATH Pentatricopeptide repeat-containing protein At5g52850,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H31 PE=2
SV=1
Length = 893
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 460 ILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRV---VLVISGFSLNGWYAEALGLFQTM 516
+L + L DGI W++ + +E + R V ++IS F+ + +A AL LF+ M
Sbjct: 64 LLSLYLKTDGI-------WNAR-KLFDEMSHRTVFAWTVMISAFTKSQEFASALSLFEEM 115
Query: 517 RVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
NEFT + +C D+ GG +H ++TG + +L
Sbjct: 116 MASGTHPNEFTFSSVVRSCAGLRDISYGGRVHGSVIKTGFEGNSVVGSSL 165
Score = 36.2 bits (82), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGGELHHKTLRTG 554
V+SGF N EA+G F MR ++ N FT + S C A L G ++H +T++ G
Sbjct: 296 VVSGFVRNLRAKEAVGTFLEMRSLGLQPNNFTYSAILSLCSAVRSLDFGKQIHSQTIKVG 355
Query: 555 LHHT 558
+
Sbjct: 356 FEDS 359
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 16/69 (23%)
Query: 470 IKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-I 528
I PD+V+W+ L +SG + NG+ + AL F+ MR+ E + T +
Sbjct: 589 IATPDVVSWNGL---------------VSGLASNGFISSALSAFEEMRMKETEPDSVTFL 633
Query: 529 DLCSACLAG 537
L SAC G
Sbjct: 634 ILLSACSNG 642
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+H+E AVALGLIS G +RV+++ R+CG
Sbjct: 616 YHSEKLAVALGLISTDHGQVIRVVKNLRVCG 646
>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110
OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2
Length = 691
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 87/216 (40%), Gaps = 19/216 (8%)
Query: 358 LVNEYGTSKNLAKRVKKF----VEKDAKNWSGPGSYPSTKSFHTNRLQAKRQLRRFISDV 413
L+N Y T K+ F + D W+ S S S + L+ ++L V
Sbjct: 45 LINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICV 104
Query: 414 DSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRP 473
S+ P Y +F+ R+ I+ +V YVC +++V + +
Sbjct: 105 PDSFTFPNVIKAYGALGREFLGRM-------IHTLVVKSGYVC--DVVVASSLVGMYAKF 155
Query: 474 DLVAWSSLLSVHEEWASRRVV---LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTIDL 530
+L + + L V +E R V VIS F +G +AL LF M E N ++ +
Sbjct: 156 NL--FENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTV 213
Query: 531 C-SACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
SAC L +G E+H K ++ G E AL
Sbjct: 214 AISACSRLLWLERGKEIHRKCVKKGFELDEYVNSAL 249
>sp|Q89K24|RUVX_BRAJA Putative Holliday junction resolvase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=blr5094 PE=3 SV=1
Length = 161
Score = 38.1 bits (87), Expect = 0.20, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 267 IVALDVGKKYTGVAVWH------QGMEDIEAESTFFMEDMEEQMLNIKEKFEPVGFVVGF 320
+V LD+G K GVAV + G+E I+ ++ F +D ++L I + + VGFV+G
Sbjct: 21 LVGLDLGTKTIGVAVSNPDRRLATGVETIQRKA--FKQD-AARLLAIAAERKVVGFVLGL 77
Query: 321 PVGSPEKDTPKQFSQAHVKAFLSKLDSLP 349
P+ + P+ S L+ L +LP
Sbjct: 78 PINMDGSEGPRAQSTRAFARNLANLTTLP 106
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 16/108 (14%)
Query: 441 RRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGF 500
RDV++ I Y I D I D+V+W+++ ISG+
Sbjct: 197 HRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAM---------------ISGY 241
Query: 501 SLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELH 547
+ G Y EAL LF+ M + +E T + + SAC + G ++H
Sbjct: 242 AETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVH 289
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 38.1 bits (87), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 545 ELHHKTLRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMC 585
E+ + LR HH+E A+A GLIS PD +R++++ R+C
Sbjct: 709 EVKEQILR---HHSEKLAIAFGLISTPDKTTLRIMKNLRVC 746
Score = 33.5 bits (75), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFS 501
RD+ + I ++ V ++ + + + + D+V W+S+ ISGF+
Sbjct: 210 RDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSM---------------ISGFN 254
Query: 502 LNGWYAEALGLFQTM-RVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
G+ AL +F M R + + FT+ + SAC + L G ++H + TG
Sbjct: 255 QRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGF 310
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 555 LHHTEMKAVALGLISLPDGMPVRVIRSARMC 585
+ H+E AVA L+ LP+G P+R+I++ R+C
Sbjct: 580 VQHSEKLAVAFALMILPEGAPIRIIKNLRVC 610
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 22/115 (19%)
Query: 441 RRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGF 500
R +I+G S G + + + DG + D+V W+++ I GF
Sbjct: 141 RNSLISGYSSSGLFDFASRLF------DGAEDKDVVTWTAM---------------IDGF 179
Query: 501 SLNGWYAEALGLFQTMRVDYIEANEFT-IDLCSACLAGDDLRKGGELHHKTLRTG 554
NG +EA+ F M+ + ANE T + + A +D+R G +H L TG
Sbjct: 180 VRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETG 234
>sp|Q9ZHD0|SILB_SALTM Putative membrane fusion protein SilB OS=Salmonella typhimurium
GN=silB PE=3 SV=1
Length = 430
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 22/123 (17%)
Query: 78 SYLKMNLEQRFFSPKQHQNVIEVEVCGLLSKFTVWQGKES-----IDEGRFITKCAEEAM 132
+YLK+N + + E+ + S+ + GKE DEG+F+ K +
Sbjct: 321 AYLKLNTQSQ-------------EMLLIPSQAVIDTGKEQRVITVDDEGKFVPKQIH--V 365
Query: 133 LHIKRRHNPFGIVLRYQVGDTPTKQFLFALDASTNFKGMPICFAHNSGTSNSHPSFDQKS 192
LH ++ + G L GDT LF +D+ N G H T NS P+ ++
Sbjct: 366 LHESQQQSGIGSGLNE--GDTVVVSGLFLIDSEANITGALERMRHPEKTENSMPAMSEQP 423
Query: 193 VNV 195
VN+
Sbjct: 424 VNM 426
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 24/30 (80%)
Query: 557 HTEMKAVALGLISLPDGMPVRVIRSARMCG 586
H+E A+A G++SL + +P+R++++ R+CG
Sbjct: 544 HSEKAAIAFGIMSLKEDVPIRIVKNLRVCG 573
>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g09190
OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
Length = 484
Score = 37.4 bits (85), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGGELHHKTLRTG 554
+I +SL G E+L F +M+ I A+E+T L +C + DLR G +H + +RTG
Sbjct: 73 MIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGELIRTG 132
Query: 555 LHHTEMKAVALGLISL 570
H + + +G++ L
Sbjct: 133 FH--RLGKIRIGVVEL 146
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 81/201 (40%), Gaps = 62/201 (30%)
Query: 447 GVV-SIGEYVCVAEILV-------MLLFLDGIK-RPDLVAWSSLLSVHE--------EWA 489
G+V SIG Y C+ ++ + F++G+ PD + W++LLS +WA
Sbjct: 503 GIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWA 562
Query: 490 SRRVV-----------LVISGFSLNGWYAEALGLFQTMRVDYIEA-------------NE 525
+ ++ L+ S ++ G + L + MR ++ +
Sbjct: 563 AESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHS 622
Query: 526 FTIDLCSACLAGDDLRKGGELHHKTLRTGL---------------------HHTEMKAVA 564
F+ D S+ K EL++K + G +H+E A+A
Sbjct: 623 FSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIA 682
Query: 565 LGLISLPDGMPVRVIRSARMC 585
GLI +P G P+RV ++ R+C
Sbjct: 683 FGLIFVPSGQPIRVGKNLRVC 703
Score = 35.8 bits (81), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 16/92 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
D +K+ ++V+W+++ + G+ G EA+ +F M+ I+ + +
Sbjct: 328 FDRMKQKNVVSWTAM---------------VVGYGQTGRAEEAVKIFLDMQRSGIDPDHY 372
Query: 527 TI-DLCSACLAGDDLRKGGELHHKTLRTGLHH 557
T+ SAC L +G + H K + +GL H
Sbjct: 373 TLGQAISACANVSSLEEGSQFHGKAITSGLIH 404
>sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720
OS=Arabidopsis thaliana GN=PCMP-E26 PE=3 SV=1
Length = 860
Score = 37.4 bits (85), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 465 LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVD---YI 521
L ++ D+VAW SL ISG NG + EAL +F M+ D
Sbjct: 429 LVFKSMEEKDMVAWGSL---------------ISGLCKNGKFKEALKVFGDMKDDDDSLK 473
Query: 522 EANEFTIDLCSACLAGDDLRKGGELHHKTLRTGL 555
++ + +AC + LR G ++H ++TGL
Sbjct: 474 PDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGL 507
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 37.4 bits (85), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 454 YVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLF 513
YVC A LV L F G +L++ + S + + +I+G S G+ +A+ LF
Sbjct: 324 YVCNA--LVSLYFHLG----NLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELF 377
Query: 514 QTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
+ M +D +E + T+ L AC A L +G +LH T + G
Sbjct: 378 KRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGF 420
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 557 HTEMKAVALGLISLPDGMPVRVIRSARMC 585
H+E A++ GL+SLP +P+ V+++ R+C
Sbjct: 996 HSEKLAISFGLLSLPATVPINVMKNLRVC 1024
>sp|Q8Y1L4|RUVX_RALSO Putative Holliday junction resolvase OS=Ralstonia solanacearum
(strain GMI1000) GN=RSc0676 PE=3 SV=1
Length = 144
Score = 37.0 bits (84), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 266 TIVALDVGKKYTGVAVWHQGMEDIEAESTFFMEDME---EQMLNIKEKFEPVGFVVGFPV 322
T++A D G+K GVA+ + A +E Q+ + ++PVGFVVG PV
Sbjct: 17 TLLAFDYGEKRIGVALGNSITRSARALEVIPNRSVEYRFTQITRLVNAWQPVGFVVGMPV 76
Query: 323 GSPEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTS 365
+D P +K + L G+P+ V+E +S
Sbjct: 77 HPEGEDQPM------IKLAKRFGNQLHGRYGLPVTWVDERYSS 113
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 37.0 bits (84), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFTID-LCSACLAGDDLRKGGELHHKTLR 552
VI G+++ G + EA+ ++ MR + I FT L AC DL G + H +T R
Sbjct: 120 VIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFR 177
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 16/94 (17%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFS 501
RDVI+ I Y V + + + D+VAW+++ ++GF+
Sbjct: 213 RDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAM---------------VTGFA 257
Query: 502 LNGWYAEALGLFQTMRVDYIEANEFTI-DLCSAC 534
N EAL F M I A+E T+ SAC
Sbjct: 258 QNAKPQEALEYFDRMEKSGIRADEVTVAGYISAC 291
>sp|Q9FLS9|PP441_ARATH Pentatricopeptide repeat-containing protein At5g61800
OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1
Length = 499
Score = 37.0 bits (84), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 50/126 (39%), Gaps = 16/126 (12%)
Query: 441 RRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGF 500
+RDV+ V I V EI+ D + DLV+W+SL ISG+
Sbjct: 180 QRDVVTYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSL---------------ISGY 224
Query: 501 SLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTE 559
+ EA+ LF M ++ + I SAC D +KG +H T R L
Sbjct: 225 AQMNHCREAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDS 284
Query: 560 MKAVAL 565
A L
Sbjct: 285 FLATGL 290
>sp|A5EKQ4|RUVX_BRASB Putative Holliday junction resolvase OS=Bradyrhizobium sp. (strain
BTAi1 / ATCC BAA-1182) GN=BBta_4721 PE=3 SV=1
Length = 161
Score = 37.0 bits (84), Expect = 0.49, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 15/101 (14%)
Query: 267 IVALDVGKKYTGVAV------WHQGMEDIEAESTFFMEDMEEQMLNIKEKFEPVGFVVGF 320
+V LD+G K GVAV G+E I+ ++ F D ++L I + + VGFV+G
Sbjct: 21 LVGLDLGTKTIGVAVSDPDRRLATGVETIQRKA--FKAD-AARLLAISSERKVVGFVLGL 77
Query: 321 PVGSPEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNE 361
P+ + P+ S +AF +L N +PI L +E
Sbjct: 78 PINMDGSEGPRAQS---TRAFAR---NLANLTDLPIGLWDE 112
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 36.6 bits (83), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 551 LRTGLHHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
+R G HH+E AVA GL+S DG + V+++ R+CG
Sbjct: 648 MRLG-HHSEKLAVAFGLMSTRDGEELVVVKNLRICG 682
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 36.6 bits (83), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 484 VHEEWASRRVVL---VISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDD 539
V +E R VV +I+ F NG EAL +FQ M +E +E T+ + SAC +
Sbjct: 209 VFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSA 268
Query: 540 LRKGGELHHKTLRT 553
++ G E+H + ++
Sbjct: 269 IKVGQEVHGRVVKN 282
>sp|O65543|PP343_ARATH Pentatricopeptide repeat-containing protein At4g31070,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E7 PE=2
SV=2
Length = 624
Score = 36.6 bits (83), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 16/85 (18%)
Query: 471 KRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-ID 529
K D+V WSS+ ISG++ G +E + L MR + IEAN T +
Sbjct: 325 KVRDVVMWSSM---------------ISGYAETGDCSEVMNLLNQMRKEGIEANSVTLLA 369
Query: 530 LCSACLAGDDLRKGGELHHKTLRTG 554
+ SAC L +H + L+ G
Sbjct: 370 IVSACTNSTLLSFASTVHSQILKCG 394
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 36.6 bits (83), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 29/153 (18%)
Query: 430 DDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLL------- 482
DD FI R +++ V+ G C+ E + L + G D+VAW+S++
Sbjct: 159 DDSFI------RNTMLHMYVTCG---CLIEAWRIFLGMIGF---DVVAWNSMIMGFAKCG 206
Query: 483 ------SVHEEWASRRVVL---VISGFSLNGWYAEALGLFQTMRVDYIEANEFT-IDLCS 532
++ +E R V +ISGF NG + +AL +F+ M+ ++ + FT + L +
Sbjct: 207 LIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLN 266
Query: 533 ACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565
AC +G +H +R + AL
Sbjct: 267 ACAYLGASEQGRWIHEYIVRNRFELNSIVVTAL 299
>sp|B0U3C1|RUVX_XYLFM Putative Holliday junction resolvase OS=Xylella fastidiosa (strain
M12) GN=Xfasm12_1427 PE=3 SV=1
Length = 155
Score = 36.6 bits (83), Expect = 0.60, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 267 IVALDVGKKYTGVAV---WHQGMEDIEAESTFFMEDMEEQMLNIKEKFEPVGFVVGFPVG 323
++ DVG + GVAV W G + + + +K + PVG VVG P+
Sbjct: 13 VLGFDVGTRRIGVAVGSAWGAGARAVAVIDVHGVAVDWNALDRVKRNWLPVGLVVGDPLT 72
Query: 324 SPEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAKR 371
D P + QAH AF +L +P+ LV+E +S A R
Sbjct: 73 LEGHDQPIR-KQAH--AFACQLRERYR---LPVVLVDERSSSVEAASR 114
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 36.6 bits (83), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 556 HHTEMKAVALGLISLPDGMPVRVIRSARMCG 586
H+E AVA GLIS PVRV ++ R+CG
Sbjct: 781 QHSEKIAVAFGLISTSKSRPVRVFKNLRVCG 811
>sp|Q88V13|RUVX_LACPL Putative Holliday junction resolvase OS=Lactobacillus plantarum
(strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=lp_2274
PE=3 SV=1
Length = 144
Score = 36.2 bits (82), Expect = 0.70, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 265 MTIVALDVGKKYTGVAV-----W-HQGMEDIEAESTFFMEDMEE----QMLNIKEKFEPV 314
M ++ LDVG + GVA+ W QG+E I ED EE ++ + E+ +
Sbjct: 1 MKLMGLDVGSRTVGVAISDAFGWTAQGVEIIRIN-----EDAEEFGIDRVAELVEELDAG 55
Query: 315 GFVVGFPVGSPEKDTPKQFSQAHVKAFLSKLDSLP-NFKGMPIC-------LVNEYGTSK 366
GFV+G P P+ + H L+ LP +F+ + LV E TS+
Sbjct: 56 GFVLGLPKNMNNTLGPRAEAAQHYGELLTARFHLPVDFEDERLTTVEAERMLVEEANTSR 115
Query: 367 NLAKRVKKFVEKDA 380
K+ KK ++K A
Sbjct: 116 ---KKRKKVIDKLA 126
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 36.2 bits (82), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 557 HTEMKAVALGLISLPDGMPVRVIRSARMC 585
H+E A+A GLIS P G P+R+ ++ R C
Sbjct: 626 HSERIAIAYGLISTPQGTPLRITKNLRAC 654
Score = 32.7 bits (73), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 16/90 (17%)
Query: 467 LDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF 526
D + RP + W++ +I G+S N + +AL ++ M++ + + F
Sbjct: 76 FDDLPRPQIFPWNA---------------IIRGYSRNNHFQDALLMYSNMQLARVSPDSF 120
Query: 527 TI-DLCSACLAGDDLRKGGELHHKTLRTGL 555
T L AC L+ G +H + R G
Sbjct: 121 TFPHLLKACSGLSHLQMGRFVHAQVFRLGF 150
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 35.8 bits (81), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 17/109 (15%)
Query: 440 ARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISG 499
++RDV I Y ++ + D + R ++ +W++ VISG
Sbjct: 144 SKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTT---------------VISG 188
Query: 500 FSLNGWYAEALGLFQTMRVD-YIEANEFT-IDLCSACLAGDDLRKGGEL 546
FS NG Y+EAL +F M D ++ N T + + AC +L G L
Sbjct: 189 FSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRL 237
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 35.8 bits (81), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 16/90 (17%)
Query: 466 FLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANE 525
D D+V W+++ ISG+ G+ EALG+F+ MR +
Sbjct: 231 LFDRFTEKDVVTWNAM---------------ISGYVNCGYPKEALGIFKEMRDAGEHPDV 275
Query: 526 FTI-DLCSACLAGDDLRKGGELHHKTLRTG 554
TI L SAC DL G LH L T
Sbjct: 276 VTILSLLSACAVLGDLETGKRLHIYILETA 305
>sp|P0C7R0|PPR69_ARATH Pentatricopeptide repeat-containing protein At1g32415,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E56 PE=2
SV=1
Length = 761
Score = 35.8 bits (81), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 21/134 (15%)
Query: 442 RDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLL-------SVHE------EW 488
RDV++ I Y+ + L + ++V W+S++ V E E
Sbjct: 198 RDVVSWNAMIKGYIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEM 257
Query: 489 ASRRVV---LVISGFSLNGWYAEALGLFQTMR--VDYIEAN-EFTIDLCSACLA-GDDLR 541
R +V +ISGF+ N Y EAL LF M+ VD + N E I L AC G + R
Sbjct: 258 PERNIVSWTAMISGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVEFR 317
Query: 542 KGGE-LHHKTLRTG 554
+ GE LH + + G
Sbjct: 318 RLGEQLHAQVISNG 331
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 35.8 bits (81), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 557 HTEMKAVALGLISLPDGMPVRVIRSARMCG 586
H+E AVA GL+ LP G +R+ ++ R CG
Sbjct: 722 HSEKIAVAFGLMKLPPGTTIRIFKNLRTCG 751
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLR 552
+ISG+ G+Y EAL + + M IE +EFT + AC L+ G ++H LR
Sbjct: 257 MISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLR 314
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 218,858,026
Number of Sequences: 539616
Number of extensions: 9325937
Number of successful extensions: 19721
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 19487
Number of HSP's gapped (non-prelim): 287
length of query: 587
length of database: 191,569,459
effective HSP length: 123
effective length of query: 464
effective length of database: 125,196,691
effective search space: 58091264624
effective search space used: 58091264624
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)