Query 007864
Match_columns 587
No_of_seqs 412 out of 2313
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 16:22:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.3E-40 2.8E-45 387.8 19.5 255 293-582 165-458 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 4.6E-40 1E-44 383.2 14.8 270 292-581 265-659 (857)
3 PLN03081 pentatricopeptide (PP 100.0 2.4E-39 5.1E-44 369.5 17.9 249 293-576 202-490 (697)
4 PLN03081 pentatricopeptide (PP 100.0 8E-38 1.7E-42 357.0 18.0 255 294-583 101-395 (697)
5 PLN03218 maturation of RBCL 1; 100.0 1E-35 2.2E-40 351.5 17.8 253 295-567 487-797 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 3.8E-35 8.3E-40 346.6 17.9 267 295-581 452-787 (1060)
7 PF13041 PPR_2: PPR repeat fam 99.4 6.1E-13 1.3E-17 102.2 6.5 49 473-536 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.0 4.4E-10 9.6E-15 86.3 3.4 46 378-440 1-50 (50)
9 PRK11788 tetratricopeptide rep 98.8 5.1E-08 1.1E-12 102.9 14.2 233 294-567 49-323 (389)
10 PRK11788 tetratricopeptide rep 98.7 8.4E-08 1.8E-12 101.3 11.2 227 294-560 83-354 (389)
11 KOG4318 Bicoid mRNA stability 98.5 4.3E-07 9.3E-12 104.0 9.0 225 305-566 15-278 (1088)
12 PF12854 PPR_1: PPR repeat 98.5 1.7E-07 3.6E-12 67.0 3.7 32 471-517 3-34 (34)
13 TIGR00756 PPR pentatricopeptid 98.4 4.2E-07 9E-12 63.0 4.2 35 476-525 1-35 (35)
14 KOG4422 Uncharacterized conser 98.4 1.9E-06 4.1E-11 92.7 11.0 224 317-560 118-469 (625)
15 TIGR02917 PEP_TPR_lipo putativ 98.4 5.6E-06 1.2E-10 94.3 14.9 229 294-565 615-877 (899)
16 TIGR02917 PEP_TPR_lipo putativ 98.3 9.5E-06 2.1E-10 92.4 15.6 221 294-554 581-833 (899)
17 PF12854 PPR_1: PPR repeat 98.2 1.8E-06 3.9E-11 61.7 3.7 33 519-551 1-34 (34)
18 PF13812 PPR_3: Pentatricopept 98.1 5.4E-06 1.2E-10 57.6 4.4 34 475-523 1-34 (34)
19 PF01535 PPR: PPR repeat; Int 98.0 6.4E-06 1.4E-10 56.0 3.3 31 476-521 1-31 (31)
20 TIGR00756 PPR pentatricopeptid 97.9 1.1E-05 2.3E-10 55.8 2.8 30 381-413 1-31 (35)
21 PF01535 PPR: PPR repeat; Int 97.6 3.8E-05 8.2E-10 52.1 2.4 30 381-413 1-31 (31)
22 PF13812 PPR_3: Pentatricopept 97.5 8.3E-05 1.8E-09 51.6 2.7 31 380-413 1-32 (34)
23 KOG4422 Uncharacterized conser 97.4 0.0015 3.2E-08 71.0 11.8 58 510-567 258-320 (625)
24 PF13429 TPR_15: Tetratricopep 97.3 0.0025 5.4E-08 65.2 11.7 203 312-552 40-276 (280)
25 KOG4318 Bicoid mRNA stability 96.8 0.0034 7.3E-08 73.1 8.2 211 335-579 11-267 (1088)
26 TIGR02521 type_IV_pilW type IV 96.8 0.04 8.7E-07 52.0 14.5 171 326-552 43-231 (234)
27 PRK15174 Vi polysaccharide exp 96.3 0.16 3.5E-06 59.0 17.7 205 325-554 87-348 (656)
28 PRK15174 Vi polysaccharide exp 96.2 0.064 1.4E-06 62.3 13.9 56 497-554 325-382 (656)
29 PF08579 RPM2: Mitochondrial r 96.0 0.052 1.1E-06 49.7 9.6 72 496-567 31-112 (120)
30 PRK10747 putative protoheme IX 95.4 0.7 1.5E-05 50.3 17.2 80 326-408 130-216 (398)
31 TIGR00990 3a0801s09 mitochondr 95.2 0.49 1.1E-05 54.2 16.0 193 326-554 343-572 (615)
32 TIGR02521 type_IV_pilW type IV 95.2 1.5 3.3E-05 41.1 16.9 149 380-565 31-209 (234)
33 TIGR00990 3a0801s09 mitochondr 95.0 0.61 1.3E-05 53.5 15.9 200 328-566 308-549 (615)
34 TIGR00540 hemY_coli hemY prote 94.7 0.21 4.5E-06 54.4 10.9 55 497-551 342-397 (409)
35 PRK09782 bacteriophage N4 rece 94.6 0.79 1.7E-05 55.9 16.2 186 328-554 490-707 (987)
36 PF06239 ECSIT: Evolutionarily 94.5 0.21 4.6E-06 50.5 9.2 48 505-552 118-167 (228)
37 KOG1126 DNA-binding cell divis 94.5 0.35 7.7E-06 55.3 11.9 117 326-464 365-495 (638)
38 PRK11447 cellulose synthase su 94.2 1.5 3.4E-05 54.2 17.8 188 326-553 281-524 (1157)
39 PRK10747 putative protoheme IX 94.0 3.8 8.3E-05 44.5 18.6 213 326-566 96-368 (398)
40 PF13429 TPR_15: Tetratricopep 94.0 0.16 3.4E-06 52.0 7.4 192 326-553 20-243 (280)
41 PRK10049 pgaA outer membrane p 93.7 0.69 1.5E-05 54.7 13.1 195 326-565 249-466 (765)
42 PF06239 ECSIT: Evolutionarily 93.5 0.55 1.2E-05 47.6 10.0 88 465-567 35-146 (228)
43 TIGR00540 hemY_coli hemY prote 93.5 2.6 5.7E-05 45.9 16.4 204 326-566 130-377 (409)
44 PRK12370 invasion protein regu 93.4 0.44 9.6E-06 54.1 10.3 168 327-552 317-501 (553)
45 PRK14574 hmsH outer membrane p 92.9 1.6 3.6E-05 52.2 14.5 92 312-408 96-198 (822)
46 PF10037 MRP-S27: Mitochondria 92.8 0.31 6.6E-06 54.0 7.7 68 497-564 110-178 (429)
47 KOG1155 Anaphase-promoting com 92.6 1.7 3.6E-05 48.5 12.7 182 326-552 274-494 (559)
48 cd00189 TPR Tetratricopeptide 92.6 0.93 2E-05 35.2 8.4 55 497-552 41-96 (100)
49 PRK10049 pgaA outer membrane p 92.2 5 0.00011 47.6 17.3 87 317-408 51-145 (765)
50 PRK14574 hmsH outer membrane p 92.0 6.9 0.00015 47.1 18.0 235 292-553 46-356 (822)
51 PRK11447 cellulose synthase su 91.8 3.8 8.2E-05 50.9 16.3 190 326-554 473-701 (1157)
52 PF14559 TPR_19: Tetratricopep 91.4 0.82 1.8E-05 36.1 6.8 62 501-566 2-65 (68)
53 PF08579 RPM2: Mitochondrial r 91.2 1.5 3.3E-05 40.3 8.9 32 505-536 84-116 (120)
54 COG0816 Predicted endonuclease 90.6 0.64 1.4E-05 44.0 6.2 76 265-342 2-84 (141)
55 PF03652 UPF0081: Uncharacteri 90.2 0.35 7.5E-06 45.3 4.0 76 265-343 1-84 (135)
56 TIGR02552 LcrH_SycD type III s 89.9 2.6 5.6E-05 37.6 9.4 64 497-563 58-122 (135)
57 COG2956 Predicted N-acetylgluc 89.9 7.9 0.00017 41.7 14.1 108 293-408 48-170 (389)
58 KOG2003 TPR repeat-containing 89.2 3 6.5E-05 46.4 10.7 39 500-539 670-709 (840)
59 TIGR02795 tol_pal_ybgF tol-pal 89.2 7.7 0.00017 33.1 11.6 56 497-554 46-106 (119)
60 PF04733 Coatomer_E: Coatomer 89.1 1.4 3.1E-05 46.2 8.1 141 360-553 110-265 (290)
61 KOG1129 TPR repeat-containing 89.0 3.1 6.7E-05 44.8 10.3 65 357-440 228-298 (478)
62 PF09295 ChAPs: ChAPs (Chs5p-A 88.8 3.9 8.4E-05 45.1 11.4 53 497-551 241-295 (395)
63 PF13432 TPR_16: Tetratricopep 88.6 1.9 4.1E-05 33.9 6.7 55 497-553 4-60 (65)
64 PRK15359 type III secretion sy 88.5 5.4 0.00012 37.1 10.7 63 497-563 65-129 (144)
65 TIGR03302 OM_YfiO outer membra 88.2 11 0.00025 37.0 13.5 159 357-553 38-232 (235)
66 PRK00109 Holliday junction res 88.0 0.91 2E-05 42.7 5.2 58 264-324 3-66 (138)
67 PF10037 MRP-S27: Mitochondria 87.6 1.6 3.4E-05 48.6 7.5 80 382-537 105-186 (429)
68 PF12921 ATP13: Mitochondrial 87.3 6.3 0.00014 36.5 10.2 71 497-567 9-96 (126)
69 PRK09782 bacteriophage N4 rece 86.9 15 0.00033 45.1 16.0 158 357-553 482-672 (987)
70 PRK10370 formate-dependent nit 86.6 10 0.00022 37.4 12.0 31 378-408 71-102 (198)
71 PF03704 BTAD: Bacterial trans 86.4 3.7 8E-05 37.7 8.3 65 497-562 69-139 (146)
72 PF12895 Apc3: Anaphase-promot 86.4 3 6.5E-05 34.7 7.0 50 497-549 32-83 (84)
73 PRK12370 invasion protein regu 85.3 9.1 0.0002 43.6 12.4 166 329-553 276-470 (553)
74 PF13424 TPR_12: Tetratricopep 83.4 3.4 7.4E-05 33.6 5.9 56 497-552 12-74 (78)
75 PF13170 DUF4003: Protein of u 82.9 18 0.00039 38.3 12.5 134 395-569 78-227 (297)
76 COG3071 HemY Uncharacterized e 81.6 54 0.0012 36.1 15.5 218 317-556 118-393 (400)
77 cd05804 StaR_like StaR_like; a 81.3 12 0.00027 38.9 10.7 78 326-408 55-143 (355)
78 PRK11189 lipoprotein NlpI; Pro 80.8 44 0.00095 34.8 14.4 66 502-568 208-280 (296)
79 PF14559 TPR_19: Tetratricopep 80.6 5.5 0.00012 31.3 6.0 33 497-531 32-65 (68)
80 PF12569 NARP1: NMDA receptor- 79.7 63 0.0014 37.0 16.2 55 498-554 202-258 (517)
81 PF13414 TPR_11: TPR repeat; P 79.7 10 0.00022 29.9 7.3 55 497-553 10-67 (69)
82 PRK11189 lipoprotein NlpI; Pro 78.6 20 0.00043 37.4 11.1 120 381-552 65-193 (296)
83 cd05804 StaR_like StaR_like; a 78.5 46 0.001 34.6 13.9 59 496-554 270-337 (355)
84 KOG3941 Intermediate in Toll s 78.4 11 0.00023 40.1 8.7 79 472-552 104-187 (406)
85 COG5010 TadD Flp pilus assembl 78.2 21 0.00047 37.1 10.8 116 357-550 105-228 (257)
86 PF12921 ATP13: Mitochondrial 77.9 13 0.00029 34.3 8.4 53 472-539 49-103 (126)
87 COG2956 Predicted N-acetylgluc 77.7 1.1E+02 0.0023 33.4 15.9 78 327-408 48-136 (389)
88 PF13371 TPR_9: Tetratricopept 77.7 9 0.00019 30.5 6.5 55 498-554 3-59 (73)
89 cd00189 TPR Tetratricopeptide 77.6 19 0.00041 27.5 8.3 57 497-555 7-65 (100)
90 PRK15179 Vi polysaccharide bio 76.6 40 0.00086 40.0 13.8 136 379-565 85-228 (694)
91 KOG4626 O-linked N-acetylgluco 75.7 11 0.00024 43.7 8.5 208 316-555 117-351 (966)
92 COG4783 Putative Zn-dependent 75.6 19 0.00042 40.4 10.2 131 362-528 316-462 (484)
93 TIGR00250 RNAse_H_YqgF RNAse H 75.4 4.1 8.9E-05 37.9 4.4 71 268-341 1-79 (130)
94 PF05843 Suf: Suppressor of fo 75.3 12 0.00027 38.8 8.3 55 497-553 77-136 (280)
95 KOG2076 RNA polymerase III tra 75.2 1E+02 0.0023 37.2 16.4 59 495-553 419-478 (895)
96 PLN03088 SGT1, suppressor of 73.4 31 0.00067 37.2 11.1 55 497-553 43-99 (356)
97 PF09205 DUF1955: Domain of un 72.7 29 0.00062 33.2 9.1 76 480-556 74-152 (161)
98 KOG1840 Kinesin light chain [C 71.7 18 0.00038 41.3 9.0 136 386-552 205-353 (508)
99 KOG1126 DNA-binding cell divis 70.4 35 0.00076 39.7 10.9 130 394-565 334-492 (638)
100 KOG1840 Kinesin light chain [C 69.9 18 0.00039 41.2 8.6 186 294-551 255-477 (508)
101 TIGR02795 tol_pal_ybgF tol-pal 69.6 29 0.00063 29.4 8.2 56 496-553 8-68 (119)
102 KOG3785 Uncharacterized conser 69.5 19 0.0004 39.4 8.0 78 329-408 338-422 (557)
103 PF03704 BTAD: Bacterial trans 68.8 18 0.00039 33.1 7.0 32 497-528 103-139 (146)
104 KOG4626 O-linked N-acetylgluco 68.0 96 0.0021 36.5 13.5 235 287-552 123-416 (966)
105 PRK02603 photosystem I assembl 66.9 37 0.00081 32.1 9.0 57 497-553 42-101 (172)
106 PF09976 TPR_21: Tetratricopep 66.4 36 0.00079 31.3 8.6 52 497-550 92-144 (145)
107 PF13424 TPR_12: Tetratricopep 66.4 11 0.00023 30.6 4.5 27 381-407 6-33 (78)
108 PLN03098 LPA1 LOW PSII ACCUMUL 66.3 25 0.00054 39.5 8.5 63 474-553 74-141 (453)
109 KOG1173 Anaphase-promoting com 65.9 1.6E+02 0.0035 34.1 14.7 67 497-566 462-529 (611)
110 PRK02603 photosystem I assembl 65.9 71 0.0015 30.2 10.7 59 497-559 79-153 (172)
111 PF04733 Coatomer_E: Coatomer 65.4 56 0.0012 34.4 10.7 51 503-554 180-231 (290)
112 KOG2002 TPR-containing nuclear 64.8 27 0.00059 42.3 8.9 112 378-566 644-758 (1018)
113 CHL00033 ycf3 photosystem I as 63.7 94 0.002 29.1 11.0 52 497-550 79-139 (168)
114 KOG3941 Intermediate in Toll s 62.9 48 0.001 35.4 9.3 87 465-566 55-165 (406)
115 KOG1070 rRNA processing protei 62.5 1.1E+02 0.0025 38.8 13.6 169 326-528 1470-1672(1710)
116 PF13428 TPR_14: Tetratricopep 62.0 6.6 0.00014 28.9 2.2 27 382-408 3-30 (44)
117 COG4783 Putative Zn-dependent 61.7 70 0.0015 36.2 10.9 114 387-551 314-435 (484)
118 PRK15359 type III secretion sy 61.0 57 0.0012 30.2 8.9 66 497-565 31-98 (144)
119 PF12895 Apc3: Anaphase-promot 60.4 9.4 0.0002 31.7 3.2 47 503-549 2-50 (84)
120 TIGR02552 LcrH_SycD type III s 60.0 49 0.0011 29.2 8.0 56 497-554 24-81 (135)
121 PF13176 TPR_7: Tetratricopept 59.9 5.6 0.00012 28.2 1.5 25 382-406 1-26 (36)
122 PF13432 TPR_16: Tetratricopep 59.8 6.2 0.00013 30.9 1.9 51 358-408 3-60 (65)
123 KOG2003 TPR repeat-containing 59.1 2.1E+02 0.0045 32.6 13.7 67 497-566 633-701 (840)
124 PRK15363 pathogenicity island 58.7 1.1E+02 0.0024 29.7 10.4 22 387-408 43-64 (157)
125 KOG1129 TPR repeat-containing 58.3 58 0.0013 35.5 9.1 149 384-558 227-392 (478)
126 PLN03098 LPA1 LOW PSII ACCUMUL 58.1 38 0.00083 38.0 8.2 31 378-408 73-104 (453)
127 COG3063 PilF Tfp pilus assembl 56.9 84 0.0018 32.6 9.7 152 357-561 40-209 (250)
128 CHL00033 ycf3 photosystem I as 56.5 61 0.0013 30.4 8.4 57 497-553 42-101 (168)
129 PRK10370 formate-dependent nit 56.2 32 0.0007 33.9 6.6 123 329-533 54-186 (198)
130 PF12688 TPR_5: Tetratrico pep 55.8 52 0.0011 30.2 7.5 56 498-553 9-67 (120)
131 PF09295 ChAPs: ChAPs (Chs5p-A 55.3 31 0.00067 38.1 6.9 113 357-518 174-296 (395)
132 KOG1070 rRNA processing protei 55.2 1E+02 0.0022 39.3 11.4 95 442-552 1478-1592(1710)
133 KOG1128 Uncharacterized conser 55.1 46 0.001 39.3 8.4 163 350-553 425-616 (777)
134 KOG4162 Predicted calmodulin-b 54.9 1.3E+02 0.0028 35.9 11.9 172 344-552 318-541 (799)
135 KOG3785 Uncharacterized conser 54.1 76 0.0017 34.9 9.2 68 495-566 398-467 (557)
136 PF13176 TPR_7: Tetratricopept 52.0 24 0.00051 24.9 3.6 21 497-517 6-26 (36)
137 COG4235 Cytochrome c biogenesi 51.9 1.2E+02 0.0025 32.3 10.1 31 378-408 154-185 (287)
138 COG3071 HemY Uncharacterized e 50.1 1.1E+02 0.0024 33.8 9.9 170 319-524 191-395 (400)
139 PF13414 TPR_11: TPR repeat; P 50.0 29 0.00064 27.2 4.3 30 379-408 2-32 (69)
140 PLN02789 farnesyltranstransfer 49.5 3E+02 0.0065 29.4 13.1 27 382-408 39-66 (320)
141 PF13374 TPR_10: Tetratricopep 49.4 12 0.00026 26.1 1.8 27 381-407 3-30 (42)
142 PRK10803 tol-pal system protei 49.2 1.2E+02 0.0026 31.5 9.8 55 497-553 187-246 (263)
143 KOG3081 Vesicle coat complex C 47.9 74 0.0016 33.7 7.8 59 497-556 180-239 (299)
144 KOG2002 TPR-containing nuclear 47.8 4E+02 0.0087 32.9 14.6 216 316-553 271-525 (1018)
145 KOG0985 Vesicle coat protein c 47.8 2.9E+02 0.0062 34.6 13.3 146 387-560 992-1169(1666)
146 KOG4340 Uncharacterized conser 47.4 2.8E+02 0.006 30.1 12.0 56 500-556 154-210 (459)
147 PF13374 TPR_10: Tetratricopep 46.8 40 0.00087 23.4 4.2 22 497-518 9-30 (42)
148 PLN03088 SGT1, suppressor of 46.5 22 0.00047 38.4 3.9 79 326-408 14-99 (356)
149 PF13371 TPR_9: Tetratricopept 45.6 25 0.00054 27.8 3.3 49 360-408 3-58 (73)
150 PF12569 NARP1: NMDA receptor- 43.7 76 0.0016 36.4 7.9 60 499-562 13-74 (517)
151 PRK15363 pathogenicity island 43.4 1E+02 0.0022 29.8 7.6 54 500-555 45-100 (157)
152 KOG2376 Signal recognition par 43.1 3.3E+02 0.0072 31.9 12.5 71 498-568 183-271 (652)
153 KOG2047 mRNA splicing factor [ 42.2 3.5E+02 0.0076 32.1 12.6 28 381-408 249-277 (835)
154 COG5107 RNA14 Pre-mRNA 3'-end 41.9 15 0.00032 41.3 1.7 89 315-406 397-493 (660)
155 PF09976 TPR_21: Tetratricopep 41.2 93 0.002 28.5 6.8 60 497-556 55-117 (145)
156 KOG3616 Selective LIM binding 40.4 1.2E+02 0.0025 36.4 8.6 81 465-547 753-847 (1636)
157 KOG1538 Uncharacterized conser 39.3 2.8E+02 0.0061 33.0 11.2 59 495-555 778-848 (1081)
158 PF13428 TPR_14: Tetratricopep 38.2 84 0.0018 22.9 4.9 29 497-527 8-36 (44)
159 COG3629 DnrI DNA-binding trans 37.7 3.3E+02 0.0073 28.8 10.9 71 497-568 160-236 (280)
160 PF05843 Suf: Suppressor of fo 36.6 2.5E+02 0.0054 29.1 9.9 65 500-566 46-114 (280)
161 TIGR03302 OM_YfiO outer membra 35.8 2E+02 0.0043 28.1 8.6 56 497-554 40-100 (235)
162 PRK15179 Vi polysaccharide bio 35.3 1.1E+02 0.0025 36.2 7.8 56 497-554 127-184 (694)
163 TIGR02508 type_III_yscG type I 34.5 1.2E+02 0.0026 27.7 6.0 53 496-554 45-98 (115)
164 PF14689 SPOB_a: Sensor_kinase 34.1 52 0.0011 26.6 3.4 24 495-518 28-51 (62)
165 KOG0553 TPR repeat-containing 32.9 36 0.00077 36.3 2.9 86 326-434 93-185 (304)
166 COG5010 TadD Flp pilus assembl 32.9 2.5E+02 0.0054 29.4 8.9 68 497-565 107-175 (257)
167 KOG3081 Vesicle coat complex C 32.8 6.4E+02 0.014 26.9 12.3 72 465-552 194-270 (299)
168 PRK10564 maltose regulon perip 32.5 63 0.0014 34.5 4.6 36 521-556 252-289 (303)
169 PF13281 DUF4071: Domain of un 32.2 7.3E+02 0.016 27.4 15.0 32 523-554 303-335 (374)
170 KOG1156 N-terminal acetyltrans 32.1 2.4E+02 0.0052 33.3 9.4 85 327-434 156-255 (700)
171 PF00515 TPR_1: Tetratricopept 32.0 38 0.00083 22.9 2.1 27 382-408 3-30 (34)
172 KOG1155 Anaphase-promoting com 31.7 8.5E+02 0.018 28.0 13.9 69 495-566 403-473 (559)
173 KOG0553 TPR repeat-containing 31.4 3.6E+02 0.0077 29.0 9.9 94 389-535 91-193 (304)
174 PF11848 DUF3368: Domain of un 30.7 1.3E+02 0.0028 23.1 4.9 32 501-532 13-45 (48)
175 KOG2376 Signal recognition par 30.4 4.7E+02 0.01 30.7 11.2 28 381-408 14-41 (652)
176 PF07719 TPR_2: Tetratricopept 30.1 43 0.00094 22.3 2.1 27 382-408 3-30 (34)
177 COG3063 PilF Tfp pilus assembl 30.1 6.6E+02 0.014 26.2 14.3 172 326-552 47-235 (250)
178 PF13174 TPR_6: Tetratricopept 29.1 26 0.00057 23.2 0.8 22 387-408 8-29 (33)
179 PF13170 DUF4003: Protein of u 28.3 2.3E+02 0.0049 30.1 8.0 62 506-567 78-149 (297)
180 KOG1914 mRNA cleavage and poly 28.1 58 0.0013 37.5 3.6 92 316-413 367-466 (656)
181 PF10602 RPN7: 26S proteasome 27.5 2.2E+02 0.0047 27.7 7.2 56 497-552 43-101 (177)
182 KOG2076 RNA polymerase III tra 27.3 5.6E+02 0.012 31.4 11.5 125 379-551 413-553 (895)
183 KOG1125 TPR repeat-containing 26.6 1.8E+02 0.0038 33.7 7.1 60 474-550 463-524 (579)
184 KOG1915 Cell cycle control pro 26.2 1E+03 0.022 27.6 12.5 71 465-552 162-235 (677)
185 PF09613 HrpB1_HrpK: Bacterial 25.8 4.4E+02 0.0096 25.6 8.8 20 500-519 54-73 (160)
186 PF11848 DUF3368: Domain of un 25.4 1.7E+02 0.0037 22.3 4.8 40 527-566 5-44 (48)
187 PF02847 MA3: MA3 domain; Int 25.3 1.5E+02 0.0032 26.0 5.1 71 495-566 7-79 (113)
188 PRK10153 DNA-binding transcrip 25.2 4.3E+02 0.0094 30.2 10.1 64 497-562 427-492 (517)
189 KOG1174 Anaphase-promoting com 24.5 9.1E+02 0.02 27.5 11.7 77 329-408 211-295 (564)
190 PF13281 DUF4071: Domain of un 24.3 4.3E+02 0.0094 29.2 9.4 26 503-528 195-220 (374)
191 cd00923 Cyt_c_Oxidase_Va Cytoc 24.3 3.9E+02 0.0084 24.3 7.3 59 506-566 23-83 (103)
192 PF13929 mRNA_stabil: mRNA sta 24.1 2.4E+02 0.0052 30.1 7.1 82 484-565 195-284 (292)
193 PF00637 Clathrin: Region in C 23.4 39 0.00085 30.7 1.1 84 320-408 12-99 (143)
194 PF08262 Lem_TRP: Leucophaea m 22.5 39 0.00085 18.1 0.5 8 57-64 2-9 (10)
195 PRK10803 tol-pal system protei 22.4 3.3E+02 0.0073 28.2 7.8 55 497-553 150-209 (263)
196 PF13431 TPR_17: Tetratricopep 22.1 26 0.00057 24.7 -0.3 23 378-400 11-34 (34)
197 KOG2908 26S proteasome regulat 22.0 5E+02 0.011 28.5 9.0 73 488-560 72-156 (380)
198 KOG4570 Uncharacterized conser 21.7 1.9E+02 0.0042 31.5 5.8 54 502-555 112-166 (418)
199 KOG0547 Translocase of outer m 21.7 7.7E+02 0.017 28.5 10.6 78 327-408 339-423 (606)
200 PRK10866 outer membrane biogen 21.6 3.1E+02 0.0067 27.9 7.3 58 497-554 39-99 (243)
201 KOG1173 Anaphase-promoting com 21.5 2.3E+02 0.0051 32.9 6.8 127 327-536 393-534 (611)
202 PF13512 TPR_18: Tetratricopep 21.4 3E+02 0.0064 26.3 6.5 56 500-555 20-78 (142)
203 smart00544 MA3 Domain in DAP-5 21.3 4.2E+02 0.009 23.1 7.2 62 495-557 7-70 (113)
204 PF13525 YfiO: Outer membrane 20.7 3.2E+02 0.007 26.7 7.0 57 497-553 12-71 (203)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-40 Score=387.78 Aligned_cols=255 Identities=20% Similarity=0.226 Sum_probs=245.2
Q ss_pred ccCchHHHHHHHHHHhcCCCCceEEeccccCCC-CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH-
Q 007864 293 STFFMEDMEEQMLNIKEKFEPVGFVVGFPVGSP-EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK- 370 (587)
Q Consensus 293 s~k~~eal~~~~~m~~~G~~Pd~~Ty~sLL~ac-~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e- 370 (587)
.+...+++..+.+|...|+.||.+||+++|++| +.++++.+.++|.+|.+.|+.||+.+|| +||++|+++|++++
T Consensus 165 ~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n---~Li~~y~k~g~~~~A 241 (857)
T PLN03077 165 AGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN---ALITMYVKCGDVVSA 241 (857)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHh---HHHHHHhcCCCHHHH
Confidence 346788888899999999999999999999995 7899999999999999999999999999 99999999999999
Q ss_pred -H-HhcccCCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---HHHHHHH---
Q 007864 371 -R-VKKFVEKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---ARLWAAR--- 441 (587)
Q Consensus 371 -r-Fd~M~~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L~aca~~--- 441 (587)
+ |++|+.||+++||+| .+|+++|++++|+++|++|.+. |+ .||.+|| |.+|++.
T Consensus 242 ~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~---g~--------------~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 242 RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL---SV--------------DPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc---CC--------------CCChhHHHHHHHHHHhcCCh
Confidence 6 999999999999999 9999999999999999999999 99 9999999 9999887
Q ss_pred ---HHHHHHHHh--hCccHHHHHHHHHH-----------HHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCC
Q 007864 442 ---RDVINGVVS--IGEYVCVAEILVML-----------LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGW 505 (587)
Q Consensus 442 ---~~lh~~m~k--~~pd~~vynaLI~~-----------~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~ 505 (587)
+++|..+.+ +.||..+||+||++ ++|++|.+||+++||+| |.||+++|+
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~l---------------i~~~~~~g~ 369 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM---------------ISGYEKNGL 369 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHH---------------HHHHHhCCC
Confidence 899999988 99999999999999 99999999999999999 999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-----------HHhcCC
Q 007864 506 YAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALGL-----------ISLPDG 573 (587)
Q Consensus 506 ~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLIa-----------l~vF~~ 573 (587)
+++|+++|++|.+.|+.||..|| ++|.+|++.|++++|.++|++|.+.|+.||..+||+||. .++|++
T Consensus 370 ~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~ 449 (857)
T PLN03077 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449 (857)
T ss_pred HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999999999999 999999999999999999999999999999999999993 599999
Q ss_pred CCCCCeeec
Q 007864 574 MPVRVIRSA 582 (587)
Q Consensus 574 M~~r~vvs~ 582 (587)
|.++|+++|
T Consensus 450 m~~~d~vs~ 458 (857)
T PLN03077 450 IPEKDVISW 458 (857)
T ss_pred CCCCCeeeH
Confidence 999999875
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.6e-40 Score=383.17 Aligned_cols=270 Identities=16% Similarity=0.190 Sum_probs=251.2
Q ss_pred hccCchHHHHHHHHHHhcCCCCceEEeccccCCC-CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH
Q 007864 292 ESTFFMEDMEEQMLNIKEKFEPVGFVVGFPVGSP-EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK 370 (587)
Q Consensus 292 ~s~k~~eal~~~~~m~~~G~~Pd~~Ty~sLL~ac-~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e 370 (587)
+++...+++..+.+|...|+.||.+||+++|++| ..|+++.|.++|.+|.+.|+.||..+|| +||++|+++|++++
T Consensus 265 ~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n---~Li~~y~k~g~~~~ 341 (857)
T PLN03077 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN---SLIQMYLSLGSWGE 341 (857)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH---HHHHHHHhcCCHHH
Confidence 3456889999999999999999999999999995 7999999999999999999999999999 99999999999999
Q ss_pred --H-HhcccCCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---HHHHHHH--
Q 007864 371 --R-VKKFVEKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---ARLWAAR-- 441 (587)
Q Consensus 371 --r-Fd~M~~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L~aca~~-- 441 (587)
+ |++|+.||+++||+| .+|+++|++++|+++|++|++. |+ .||..|| |.+|++.
T Consensus 342 A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~---g~--------------~Pd~~t~~~ll~a~~~~g~ 404 (857)
T PLN03077 342 AEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD---NV--------------SPDEITIASVLSACACLGD 404 (857)
T ss_pred HHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh---CC--------------CCCceeHHHHHHHHhccch
Confidence 6 999999999999999 9999999999999999999999 99 9999999 9999877
Q ss_pred ----HHHHHHHHh--hCccHHHHHHHHHH-----------HHHhcCCCCChhhhHHHHHhHHhhc---------------
Q 007864 442 ----RDVINGVVS--IGEYVCVAEILVML-----------LFLDGIKRPDLVAWSSLLSVHEEWA--------------- 489 (587)
Q Consensus 442 ----~~lh~~m~k--~~pd~~vynaLI~~-----------~vFd~M~~pdvvTyNsLI~gy~km~--------------- 489 (587)
.++|+.+.+ +.+|..+||+||++ ++|++|.++|+++||+||+||++.+
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~ 484 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT 484 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 889999988 99999999999999 9999999999999999999987511
Q ss_pred ------------------------------------------------------------------CcCHH---HHHHHH
Q 007864 490 ------------------------------------------------------------------SRRVV---LVISGF 500 (587)
Q Consensus 490 ------------------------------------------------------------------~~dvv---sLI~gy 500 (587)
++|++ +||.||
T Consensus 485 ~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~ 564 (857)
T PLN03077 485 LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGY 564 (857)
T ss_pred CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 35666 899999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHH-----------
Q 007864 501 SLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTL-RTGLHHTEMKAVALGL----------- 567 (587)
Q Consensus 501 ~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~-k~G~~pd~~vynaLIa----------- 567 (587)
+++|+.++|+++|++|.+.|++||.+|| ++|++|++.|++++|.++|+.|. +.|+.|+..+|++||+
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999999999999999999 99999999999999999999999 7899999999999993
Q ss_pred HHhcCCCCC-CCeee
Q 007864 568 ISLPDGMPV-RVIRS 581 (587)
Q Consensus 568 l~vF~~M~~-r~vvs 581 (587)
.+++++|+. +|...
T Consensus 645 ~~~~~~m~~~pd~~~ 659 (857)
T PLN03077 645 YNFINKMPITPDPAV 659 (857)
T ss_pred HHHHHHCCCCCCHHH
Confidence 489999974 45443
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.4e-39 Score=369.55 Aligned_cols=249 Identities=14% Similarity=0.182 Sum_probs=236.4
Q ss_pred ccCchHHHHHHHHHHhcCCCCceEEeccccCCC-CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH-
Q 007864 293 STFFMEDMEEQMLNIKEKFEPVGFVVGFPVGSP-EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK- 370 (587)
Q Consensus 293 s~k~~eal~~~~~m~~~G~~Pd~~Ty~sLL~ac-~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e- 370 (587)
.+...+++..+.+|...|+.||..||+++|++| +.|.++.|.++|..+.+.|+.+|..+|| +||++|+|+|++++
T Consensus 202 ~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n---~Li~~y~k~g~~~~A 278 (697)
T PLN03081 202 AGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC---ALIDMYSKCGDIEDA 278 (697)
T ss_pred CcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHH---HHHHHHHHCCCHHHH
Confidence 346888999999999999999999999999994 7999999999999999999999999999 99999999999999
Q ss_pred -H-HhcccCCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---HHHHHHH---
Q 007864 371 -R-VKKFVEKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---ARLWAAR--- 441 (587)
Q Consensus 371 -r-Fd~M~~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L~aca~~--- 441 (587)
+ |++|+++|+++||+| .+|+++|+.++|+++|++|.+. |+ .||..|| +.+|++.
T Consensus 279 ~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~---g~--------------~pd~~t~~~ll~a~~~~g~~ 341 (697)
T PLN03081 279 RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS---GV--------------SIDQFTFSIMIRIFSRLALL 341 (697)
T ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CC--------------CCCHHHHHHHHHHHHhccch
Confidence 6 999999999999999 9999999999999999999999 99 9999999 9999987
Q ss_pred ---HHHHHHHHh--hCccHHHHHHHHHH-----------HHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCC
Q 007864 442 ---RDVINGVVS--IGEYVCVAEILVML-----------LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGW 505 (587)
Q Consensus 442 ---~~lh~~m~k--~~pd~~vynaLI~~-----------~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~ 505 (587)
+++|+.+.+ +.+|..+||+||++ ++|++|.+||++|||+| |.||+++|+
T Consensus 342 ~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~l---------------I~~y~~~G~ 406 (697)
T PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNAL---------------IAGYGNHGR 406 (697)
T ss_pred HHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHH---------------HHHHHHcCC
Confidence 889999988 89999999999999 99999999999999999 999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHH-----------HHhcC
Q 007864 506 YAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLR-TGLHHTEMKAVALGL-----------ISLPD 572 (587)
Q Consensus 506 ~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k-~G~~pd~~vynaLIa-----------l~vF~ 572 (587)
.++|+++|++|.+.|++||.+|| ++|++|++.|++++|.++|+.|.+ .|+.|+..+|++||+ .++|+
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999999999999 999999999999999999999986 699999999999983 47888
Q ss_pred CCCC
Q 007864 573 GMPV 576 (587)
Q Consensus 573 ~M~~ 576 (587)
+|+.
T Consensus 487 ~~~~ 490 (697)
T PLN03081 487 RAPF 490 (697)
T ss_pred HCCC
Confidence 8875
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8e-38 Score=357.01 Aligned_cols=255 Identities=17% Similarity=0.164 Sum_probs=240.9
Q ss_pred cCchHHHHHHHHHHhc-CCCCceEEeccccCCC-CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH-
Q 007864 294 TFFMEDMEEQMLNIKE-KFEPVGFVVGFPVGSP-EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK- 370 (587)
Q Consensus 294 ~k~~eal~~~~~m~~~-G~~Pd~~Ty~sLL~ac-~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e- 370 (587)
+...+++..+..|... ++.||..||++++++| +.++++.|.++|..|.+.|+.||..+|| +||++|+++|++++
T Consensus 101 g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n---~Li~~y~k~g~~~~A 177 (697)
T PLN03081 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN---RVLLMHVKCGMLIDA 177 (697)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH---HHHHHHhcCCCHHHH
Confidence 4467777777777665 4789999999999995 7899999999999999999999999999 99999999999999
Q ss_pred -H-HhcccCCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---HHHHHHH---
Q 007864 371 -R-VKKFVEKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---ARLWAAR--- 441 (587)
Q Consensus 371 -r-Fd~M~~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L~aca~~--- 441 (587)
+ |++|++||+++||+| .+|++.|++++|+++|++|.+. |+ .||..|| +.+|++.
T Consensus 178 ~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~---g~--------------~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 178 RRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED---GS--------------DAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh---CC--------------CCChhhHHHHHHHHhcCCcH
Confidence 6 999999999999999 9999999999999999999999 99 9999999 8888876
Q ss_pred ---HHHHHHHHh--hCccHHHHHHHHHH-----------HHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCC
Q 007864 442 ---RDVINGVVS--IGEYVCVAEILVML-----------LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGW 505 (587)
Q Consensus 442 ---~~lh~~m~k--~~pd~~vynaLI~~-----------~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~ 505 (587)
+++|..+.+ +.+|..+||+||++ ++|++|.++|+++||+| |.||+++|+
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~l---------------i~~y~~~g~ 305 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSM---------------LAGYALHGY 305 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHH---------------HHHHHhCCC
Confidence 899999988 89999999999999 89999999999999999 999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-----------HHhcCC
Q 007864 506 YAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALGL-----------ISLPDG 573 (587)
Q Consensus 506 ~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLIa-----------l~vF~~ 573 (587)
+++|+++|++|.+.|+.||.+|| ++|++|++.|++++|+++|++|.+.|+.||..+||+||. .++|++
T Consensus 306 ~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~ 385 (697)
T PLN03081 306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385 (697)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999999999999999999 999999999999999999999999999999999999993 599999
Q ss_pred CCCCCeeecc
Q 007864 574 MPVRVIRSAR 583 (587)
Q Consensus 574 M~~r~vvs~R 583 (587)
|.++|+++|.
T Consensus 386 m~~~d~~t~n 395 (697)
T PLN03081 386 MPRKNLISWN 395 (697)
T ss_pred CCCCCeeeHH
Confidence 9999998764
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-35 Score=351.48 Aligned_cols=253 Identities=11% Similarity=0.056 Sum_probs=198.5
Q ss_pred CchHHHHHHHHHHhcCCCCceEEeccccCC-CCCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H
Q 007864 295 FFMEDMEEQMLNIKEKFEPVGFVVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R 371 (587)
Q Consensus 295 k~~eal~~~~~m~~~G~~Pd~~Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r 371 (587)
...++...+.+|...|+.||.+||+++|++ |+.|++++|.++|++|.+.|+.||.++|| +||++|++.|++++ +
T Consensus 487 ~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYn---sLI~a~~k~G~~deA~~ 563 (1060)
T PLN03218 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN---ALISACGQSGAVDRAFD 563 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHCCCHHHHHH
Confidence 455566666666667777777777777777 56777777777777777777777777777 77777777777777 4
Q ss_pred -Hhccc------CCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---HHHHHH
Q 007864 372 -VKKFV------EKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---ARLWAA 440 (587)
Q Consensus 372 -Fd~M~------~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L~aca~ 440 (587)
|++|. .||.++||+| .+|++.|++++|+++|++|.+. |+ .||..+| |.+|++
T Consensus 564 lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~---gi--------------~p~~~tynsLI~ay~k 626 (1060)
T PLN03218 564 VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY---NI--------------KGTPEVYTIAVNSCSQ 626 (1060)
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CC--------------CCChHHHHHHHHHHHh
Confidence 77773 3677777777 7777777777777777777777 77 7777777 777776
Q ss_pred H------HHHHHHHHh--hCccHHHHHHHHHH-----------HHHhcCC----CCChhhhHHHHHhHHhhc--------
Q 007864 441 R------RDVINGVVS--IGEYVCVAEILVML-----------LFLDGIK----RPDLVAWSSLLSVHEEWA-------- 489 (587)
Q Consensus 441 ~------~~lh~~m~k--~~pd~~vynaLI~~-----------~vFd~M~----~pdvvTyNsLI~gy~km~-------- 489 (587)
. ..++..|.+ +.||.++||+||++ ++|++|. .||.++||+||++|++.+
T Consensus 627 ~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~l 706 (1060)
T PLN03218 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706 (1060)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5 556666665 77888888888877 6777775 478888888888888622
Q ss_pred ---------CcCHH---HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 007864 490 ---------SRRVV---LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLH 556 (587)
Q Consensus 490 ---------~~dvv---sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~ 556 (587)
.||++ +||.+|++.|++++|+++|++|.+.|+.||..|| ++|++|++.|++++|.++|++|.+.|+.
T Consensus 707 f~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIK 786 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 47777 8999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred CCHHHHHHHHH
Q 007864 557 HTEMKAVALGL 567 (587)
Q Consensus 557 pd~~vynaLIa 567 (587)
||..+|++||.
T Consensus 787 pd~~tynsLIg 797 (1060)
T PLN03218 787 PNLVMCRCITG 797 (1060)
T ss_pred CCHHHHHHHHH
Confidence 99999999873
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.8e-35 Score=346.57 Aligned_cols=267 Identities=15% Similarity=0.116 Sum_probs=205.7
Q ss_pred CchHHHHHHHHHHhcCCCCceEEeccccCC-CCCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H
Q 007864 295 FFMEDMEEQMLNIKEKFEPVGFVVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R 371 (587)
Q Consensus 295 k~~eal~~~~~m~~~G~~Pd~~Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r 371 (587)
...++...+.+|.+.|+.||.++|++||++ |+.|++++|.++|++|.+.|+.||.++|| +||++|++.|++++ +
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyn---aLI~gy~k~G~~eeAl~ 528 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG---ALIDGCARAGQVAKAFG 528 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHCcCHHHHHH
Confidence 455666666667777888888888888887 57788888888888888888888888888 88888888888877 5
Q ss_pred -Hhccc----CCCCCcchhh-hhcccCCChhHHHHHHHHHhh--cccCCCCCCCCCCCCCCCCCCCCHHHH---HHHHHH
Q 007864 372 -VKKFV----EKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLR--RFISDVDSSYLPPEGCPNYKPPDDKFI---ARLWAA 440 (587)
Q Consensus 372 -Fd~M~----~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~--~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L~aca~ 440 (587)
|++|. .||.++||+| .+|++.|++++|+++|++|.. . |+ .||.+|| |.+|++
T Consensus 529 lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~---gi--------------~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH---PI--------------DPDHITVGALMKACAN 591 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC---CC--------------CCcHHHHHHHHHHHHH
Confidence 77775 4777888888 888888888888888888865 4 67 7888887 777776
Q ss_pred H------HHHHHHHHh--hCccHHHHHHHHHH-----------HHHhcCC----CCChhhhHHHHHhHHhhc--------
Q 007864 441 R------RDVINGVVS--IGEYVCVAEILVML-----------LFLDGIK----RPDLVAWSSLLSVHEEWA-------- 489 (587)
Q Consensus 441 ~------~~lh~~m~k--~~pd~~vynaLI~~-----------~vFd~M~----~pdvvTyNsLI~gy~km~-------- 489 (587)
. .+++..|.+ +.|+..+||+||++ ++|++|. .||.+|||+||++|++.+
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 6 666666666 77788888888877 7777776 478888888888887622
Q ss_pred ---------CcCHH---HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 007864 490 ---------SRRVV---LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLH 556 (587)
Q Consensus 490 ---------~~dvv---sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~ 556 (587)
.+|.+ +||.+|++.|++++|.++|++|.+.|+.||.+|| .||.+|++.|++++|.+++++|.+.|+.
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 34555 8888888888888888888888888888888888 8888888888888888888888888888
Q ss_pred CCHHHHHHHH-----------HHHhcCCCCCCCeee
Q 007864 557 HTEMKAVALG-----------LISLPDGMPVRVIRS 581 (587)
Q Consensus 557 pd~~vynaLI-----------al~vF~~M~~r~vvs 581 (587)
||..+|++|| +.++|++|...++..
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~p 787 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKP 787 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 8888888887 246777777665543
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.39 E-value=6.1e-13 Score=102.19 Aligned_cols=49 Identities=35% Similarity=0.590 Sum_probs=48.0
Q ss_pred CChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhc
Q 007864 473 PDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLA 536 (587)
Q Consensus 473 pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~ 536 (587)
||+++||+| |+||++.|++++|+++|++|++.|++||..|| ++|++||+
T Consensus 1 P~~~~yn~l---------------i~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTL---------------ISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 899999999 99999999999999999999999999999999 99999986
No 8
>PF13041 PPR_2: PPR repeat family
Probab=98.96 E-value=4.4e-10 Score=86.26 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=44.0
Q ss_pred CCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---HHHHHH
Q 007864 378 KDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---ARLWAA 440 (587)
Q Consensus 378 pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L~aca~ 440 (587)
||+++||+| ++|++.|++++|+++|++|+++ |+ +||..|| |++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~---g~--------------~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKR---GI--------------KPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHc---CC--------------CCCHHHHHHHHHHHcC
Confidence 899999999 9999999999999999999999 99 9999999 888874
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.82 E-value=5.1e-08 Score=102.93 Aligned_cols=233 Identities=13% Similarity=0.028 Sum_probs=161.5
Q ss_pred cCchHHHHHHHHHHhcCCCCceE-EeccccCC-CCCCCCccchhhHHHHHHcCCCCC---CCCCCchhHHHHhhhcCCcH
Q 007864 294 TFFMEDMEEQMLNIKEKFEPVGF-VVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSL---PNFKGMPICLVNEYGTSKNL 368 (587)
Q Consensus 294 ~k~~eal~~~~~m~~~G~~Pd~~-Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd---~~tynipiaLI~~y~k~G~l 368 (587)
+...+++..+.+++.. .|+.. ++..+... ...|++++|..++..+.+.+-.++ ..++. .|...|.+.|+.
T Consensus 49 ~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~---~La~~~~~~g~~ 123 (389)
T PRK11788 49 EQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQ---ELGQDYLKAGLL 123 (389)
T ss_pred CChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHH---HHHHHHHHCCCH
Confidence 3456666666666643 45433 45555444 478999999999999987542221 23566 889999999999
Q ss_pred HH--H-HhcccC---CCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCH---HHH---H
Q 007864 369 AK--R-VKKFVE---KDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDD---KFI---A 435 (587)
Q Consensus 369 ~e--r-Fd~M~~---pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~---~Ty---L 435 (587)
++ . |+++.+ .+..+|+.+ ..|.+.|++++|.++|++|.+. +- .++. ..+ +
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~--------------~~~~~~~~~~~~~l 186 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL---GG--------------DSLRVEIAHFYCEL 186 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh---cC--------------CcchHHHHHHHHHH
Confidence 99 5 888764 467789999 9999999999999999999887 43 3322 112 1
Q ss_pred -HHHHHH------HHHHHHHHhhCcc-HHHHHHHHHH-----------HHHhcCC--CCC--hhhhHHHHHhHHhhcCcC
Q 007864 436 -RLWAAR------RDVINGVVSIGEY-VCVAEILVML-----------LFLDGIK--RPD--LVAWSSLLSVHEEWASRR 492 (587)
Q Consensus 436 -~aca~~------~~lh~~m~k~~pd-~~vynaLI~~-----------~vFd~M~--~pd--vvTyNsLI~gy~km~~~d 492 (587)
..+.+. ...+..+.+..|+ ...+..+... +.|+++. .|+ ..+|+.+
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l----------- 255 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKL----------- 255 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHH-----------
Confidence 111111 3333333333343 3344444333 5555554 333 3457777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007864 493 VVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALGL 567 (587)
Q Consensus 493 vvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLIa 567 (587)
..+|++.|++++|.+.++++.+. .||...+ .+...+.+.|+.++|..++.++++. .|+...++.++.
T Consensus 256 ----~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~ 323 (389)
T PRK11788 256 ----MECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLD 323 (389)
T ss_pred ----HHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHH
Confidence 88999999999999999998875 5787788 8899999999999999999988876 688888887663
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.70 E-value=8.4e-08 Score=101.31 Aligned_cols=227 Identities=11% Similarity=-0.019 Sum_probs=156.6
Q ss_pred cCchHHHHHHHHHHhcCCCCc---eEEeccccCC-CCCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHH
Q 007864 294 TFFMEDMEEQMLNIKEKFEPV---GFVVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLA 369 (587)
Q Consensus 294 ~k~~eal~~~~~m~~~G~~Pd---~~Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~ 369 (587)
+...+++..+-+....+..++ ..++..+... ...|+.+.|..++..+.+.. ..+..+++ .+...|.+.|+++
T Consensus 83 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~---~la~~~~~~g~~~ 158 (389)
T PRK11788 83 GEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQ---QLLEIYQQEKDWQ 158 (389)
T ss_pred CcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHH---HHHHHHHHhchHH
Confidence 345555555544444322221 1234444444 46899999999999998752 33556788 9999999999999
Q ss_pred H--H-HhcccC--CCC------Ccchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHH-HH--
Q 007864 370 K--R-VKKFVE--KDA------KNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDK-FI-- 434 (587)
Q Consensus 370 e--r-Fd~M~~--pd~------vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~-Ty-- 434 (587)
+ . |+.+.+ |+. ..|..+ ..+.+.|++++|.+.|+++.+. .|+.. .+
T Consensus 159 ~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------------------~p~~~~~~~~ 219 (389)
T PRK11788 159 KAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA-------------------DPQCVRASIL 219 (389)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH-------------------CcCCHHHHHH
Confidence 9 5 887754 221 135667 7889999999999999999876 45433 33
Q ss_pred -HHHHHHH------HHHHHHHHhhCcc--HHHHHHHHHH-----------HHHhcCC--CCChhhhHHHHHhHHhhcCcC
Q 007864 435 -ARLWAAR------RDVINGVVSIGEY--VCVAEILVML-----------LFLDGIK--RPDLVAWSSLLSVHEEWASRR 492 (587)
Q Consensus 435 -L~aca~~------~~lh~~m~k~~pd--~~vynaLI~~-----------~vFd~M~--~pdvvTyNsLI~gy~km~~~d 492 (587)
...+.+. ..++..+.+..|+ ..+++.|... ..++++. .||...++.+
T Consensus 220 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~l----------- 288 (389)
T PRK11788 220 LGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLAL----------- 288 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHH-----------
Confidence 2333333 2333333333443 2445666554 4455443 4666667777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhc---CCCHHHHHHHHHHHHHcCCCCCHH
Q 007864 493 VVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLA---GDDLRKGGELHHKTLRTGLHHTEM 560 (587)
Q Consensus 493 vvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~---~G~l~~A~~l~~~M~k~G~~pd~~ 560 (587)
...|.+.|++++|.++|+++.+. .||..++ .++..+.. .|+.+++..+++.|.+.++.|+..
T Consensus 289 ----a~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 289 ----AQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred ----HHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999998875 7999999 89988775 458999999999999988877654
No 11
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.46 E-value=4.3e-07 Score=104.04 Aligned_cols=225 Identities=11% Similarity=-0.005 Sum_probs=159.3
Q ss_pred HHHhcCCCCceEEeccccCC-CCCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHHHHhcccCCCCCcc
Q 007864 305 LNIKEKFEPVGFVVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAKRVKKFVEKDAKNW 383 (587)
Q Consensus 305 ~m~~~G~~Pd~~Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~erFd~M~~pd~vtY 383 (587)
.+...|+.||.+||..+|.. |..|+.+.|- +|..|....++.+-.+++ +++.+....++.+. -++|...||
T Consensus 15 ~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~---~lv~sh~~And~En----pkep~aDty 86 (1088)
T KOG4318|consen 15 LHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFR---GLVASHKEANDAEN----PKEPLADTY 86 (1088)
T ss_pred HHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHH---HHHhcccccccccC----CCCCchhHH
Confidence 34457999999999999998 9999999998 999999988988899999 99999888887642 235778899
Q ss_pred hhh-hhcccCCChhHHHHHHHH-HhhcccCCCCCCCCC-------------CCCCCCCCCCCHHHH-HHHHHHHHHHHHH
Q 007864 384 SGP-GSYPSTKSFHTNRLQAKR-QLRRFISDVDSSYLP-------------PEGCPNYKPPDDKFI-ARLWAARRDVING 447 (587)
Q Consensus 384 NsL-~gy~r~G~~eeAl~Lf~e-M~~~~~~Gv~~~~~~-------------~~g~~~~~~Pd~~Ty-L~aca~~~~lh~~ 447 (587)
+.| .+|.++|+..- ++.-++ |..- + .+|.+ ++++| .--||..+- +.-.- +.+++.
T Consensus 87 t~Ll~ayr~hGDli~-fe~veqdLe~i----~-~sfs~~Gvgs~e~~fl~k~~c~p-~~lpda~n~illlv~--eglwaq 157 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLIL-FEVVEQDLESI----N-QSFSDHGVGSPERWFLMKIHCCP-HSLPDAENAILLLVL--EGLWAQ 157 (1088)
T ss_pred HHHHHHHHhccchHH-HHHHHHHHHHH----H-hhhhhhccCcHHHHHHhhcccCc-ccchhHHHHHHHHHH--HHHHHH
Confidence 999 99999999766 333333 3321 1 11110 12222 225666665 11111 222222
Q ss_pred HHh---hCc-------cHH----------HHHHHHHH-HHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCH
Q 007864 448 VVS---IGE-------YVC----------VAEILVML-LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWY 506 (587)
Q Consensus 448 m~k---~~p-------d~~----------vynaLI~~-~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~ 506 (587)
..+ ..| -.+ -+..|.++ +.+.+ .+|..+|.+. ++.-..+|++
T Consensus 158 llkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~---------------l~~alaag~~ 220 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAV---------------LKRALAAGDV 220 (1088)
T ss_pred HHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHH---------------HHHHHhcCch
Confidence 222 111 111 11112221 22222 4677777777 9999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 507 AEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 507 ~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
+.|..++.+|++.|+.-+..-| .||-+ .++..-...+..-|.+.|+.|+..|+.-.+
T Consensus 221 d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 221 DGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred hhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 9999999999999999999888 77776 888888999999999999999999997665
No 12
>PF12854 PPR_1: PPR repeat
Probab=98.45 E-value=1.7e-07 Score=66.99 Aligned_cols=32 Identities=38% Similarity=0.726 Sum_probs=30.3
Q ss_pred CCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007864 471 KRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMR 517 (587)
Q Consensus 471 ~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~ 517 (587)
..||++|||+| |+|||+.|++++|+++|++|+
T Consensus 3 ~~Pd~~ty~~l---------------I~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 3 CEPDVVTYNTL---------------IDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCcHhHHHHH---------------HHHHHHCCCHHHHHHHHHhCc
Confidence 36999999999 999999999999999999995
No 13
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.38 E-value=4.2e-07 Score=62.98 Aligned_cols=35 Identities=37% Similarity=0.524 Sum_probs=33.4
Q ss_pred hhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 007864 476 VAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANE 525 (587)
Q Consensus 476 vTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~ 525 (587)
+|||+| |++|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~l---------------i~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTL---------------IDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHH---------------HHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 489999 99999999999999999999999999984
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=1.9e-06 Score=92.69 Aligned_cols=224 Identities=11% Similarity=0.030 Sum_probs=165.9
Q ss_pred EeccccCCCCCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhh--cCCcH--HH-H-Hhccc--------------
Q 007864 317 VVGFPVGSPEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYG--TSKNL--AK-R-VKKFV-------------- 376 (587)
Q Consensus 317 Ty~sLL~ac~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~--k~G~l--~e-r-Fd~M~-------------- 376 (587)
|=|.|++.-..|.++++.-+++.|...|...+..+-- .|...-| .+.++ .+ + |-.|.
T Consensus 118 ~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~---~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 118 TENNLLKMISSREVKDSCILYERMRSENVDVSEKVQL---ELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred chhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHH---HHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 4556665555677777778888888777665443322 3333222 22211 11 3 44443
Q ss_pred ---------CCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH-----HHHHHHH
Q 007864 377 ---------EKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI-----ARLWAAR 441 (587)
Q Consensus 377 ---------~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty-----L~aca~~ 441 (587)
.+...||.+| .|+|+--..+.|.+++++-... .. +-+..+| +..|...
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~---k~--------------kv~~~aFN~lI~~~S~~~~ 257 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAA---KG--------------KVYREAFNGLIGASSYSVG 257 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh---hh--------------eeeHHhhhhhhhHHHhhcc
Confidence 3466799999 9999999999999999999888 77 8888888 3344444
Q ss_pred HHHHHHHHh--hCccHHHHHHHHHH---------------HHHhcCC----CCChhhhHHHHHhHHh-------------
Q 007864 442 RDVINGVVS--IGEYVCVAEILVML---------------LFLDGIK----RPDLVAWSSLLSVHEE------------- 487 (587)
Q Consensus 442 ~~lh~~m~k--~~pd~~vynaLI~~---------------~vFd~M~----~pdvvTyNsLI~gy~k------------- 487 (587)
+.+..+|.. +.||..|+|+++.. ++..+|+ +|..-+|.-+|.-++|
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 677777766 99999999999987 6677776 6888899988888876
Q ss_pred -------------------------hc-------------------------------CcCHH--HHHHHHHhcCCHHHH
Q 007864 488 -------------------------WA-------------------------------SRRVV--LVISGFSLNGWYAEA 509 (587)
Q Consensus 488 -------------------------m~-------------------------------~~dvv--sLI~gy~k~G~~~eA 509 (587)
|+ ++++. .+....|+....+.-
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 12222 677788888889999
Q ss_pred HHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHH
Q 007864 510 LGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEM 560 (587)
Q Consensus 510 l~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~ 560 (587)
+.+|+.|.=+-+-|+..|- .++.|..-.+.++--.+++.+++..|......
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~ 469 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSD 469 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH
Confidence 9999999988899999999 99999999999999999999999888554443
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.35 E-value=5.6e-06 Score=94.25 Aligned_cols=229 Identities=11% Similarity=0.014 Sum_probs=138.0
Q ss_pred cCchHHHHHHHHHHhcCCCCceEEeccccCC-CCCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--
Q 007864 294 TFFMEDMEEQMLNIKEKFEPVGFVVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK-- 370 (587)
Q Consensus 294 ~k~~eal~~~~~m~~~G~~Pd~~Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e-- 370 (587)
+...+++..+.+..... +.+...+..+... ...|+.++|...+..+.+.. +.+..++. .+...+.+.|+.++
T Consensus 615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~---~l~~~~~~~~~~~~A~ 689 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQI---GLAQLLLAAKRTESAK 689 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH---HHHHHHHHcCCHHHHH
Confidence 34555555555544322 2234445555555 46899999999999988653 33466777 89999999999999
Q ss_pred H-HhcccC---CCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---HHHHHHH-
Q 007864 371 R-VKKFVE---KDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---ARLWAAR- 441 (587)
Q Consensus 371 r-Fd~M~~---pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L~aca~~- 441 (587)
+ ++.+.+ .+...|..+ ..|.+.|++++|.+.|+++... .|+..++ ..++.+.
T Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 690 KIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR-------------------APSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-------------------CCCchHHHHHHHHHHHCC
Confidence 5 777753 466778888 9999999999999999999887 4444444 3344333
Q ss_pred -----HHHHHHHHh-hCccHHHHHHHHHH-----------HHHhcCC---CCChhhhHHHHHhHHhhcCcCHHHHHHHHH
Q 007864 442 -----RDVINGVVS-IGEYVCVAEILVML-----------LFLDGIK---RPDLVAWSSLLSVHEEWASRRVVLVISGFS 501 (587)
Q Consensus 442 -----~~lh~~m~k-~~pd~~vynaLI~~-----------~vFd~M~---~pdvvTyNsLI~gy~km~~~dvvsLI~gy~ 501 (587)
......+.+ ...+..+++.+... ..|+++. ..+...|+.+ ...|.
T Consensus 751 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l---------------~~~~~ 815 (899)
T TIGR02917 751 NTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNL---------------AWLYL 815 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHH---------------HHHHH
Confidence 333333333 44566666666554 5566554 2467788888 44455
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCH-HHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007864 502 LNGWYAEALGLFQTMRVDYIEANE-FTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565 (587)
Q Consensus 502 k~G~~~eAl~Lf~eM~~~Gi~PD~-~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaL 565 (587)
+.|+ .+|++++++.... .|+. .++ .+-..+.+.|++++|.++++.+++.+-. +..++..|
T Consensus 816 ~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l 877 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHL 877 (899)
T ss_pred hcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHH
Confidence 5555 4455555544432 1222 222 4444444455555555555555544432 33444333
No 16
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.32 E-value=9.5e-06 Score=92.37 Aligned_cols=221 Identities=13% Similarity=0.026 Sum_probs=152.6
Q ss_pred cCchHHHHHHHHHHhcCCCCceEEeccccCC-CCCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--
Q 007864 294 TFFMEDMEEQMLNIKEKFEPVGFVVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK-- 370 (587)
Q Consensus 294 ~k~~eal~~~~~m~~~G~~Pd~~Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e-- 370 (587)
+...++...+.+.. .....+..+|..+..+ ...|+.++|...+..+.+.. +.+...+. .+...|.+.|+.++
T Consensus 581 ~~~~~A~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~---~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 581 GQLKKALAILNEAA-DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALL---LLADAYAVMKNYAKAI 655 (899)
T ss_pred CCHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH---HHHHHHHHcCCHHHHH
Confidence 34455554444443 3344455667777666 47899999999999998754 33455677 88999999999999
Q ss_pred H-Hhccc---CCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---HHHHHHH-
Q 007864 371 R-VKKFV---EKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---ARLWAAR- 441 (587)
Q Consensus 371 r-Fd~M~---~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L~aca~~- 441 (587)
. |+++. ..+..+|+.+ ..+.+.|++++|.++++.|.+. +. .+...+ -..+.+.
T Consensus 656 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~---------------~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 656 TSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ---HP---------------KAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---Cc---------------CChHHHHHHHHHHHHCC
Confidence 5 77654 3457789999 9999999999999999999887 32 233333 2222222
Q ss_pred -----HHHHHHHHhhCccHHHHHHHHHH-----------HHHhcCC---CCChhhhHHHHHhHHhhcCcCHHHHHHHHHh
Q 007864 442 -----RDVINGVVSIGEYVCVAEILVML-----------LFLDGIK---RPDLVAWSSLLSVHEEWASRRVVLVISGFSL 502 (587)
Q Consensus 442 -----~~lh~~m~k~~pd~~vynaLI~~-----------~vFd~M~---~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k 502 (587)
...+..+.+..|+..++..+... +.++.+. ..|...++.+ ...|.+
T Consensus 718 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l---------------a~~~~~ 782 (899)
T TIGR02917 718 DYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTAL---------------AELYLA 782 (899)
T ss_pred CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH---------------HHHHHH
Confidence 33333333344544444444433 3333332 2366778888 888999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 503 NGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 503 ~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
.|+.++|.+.|+++.+.. ..+...+ .+...+.+.|+ .+|..+++.+.+..
T Consensus 783 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 783 QKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred CcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 999999999999998764 3466777 89999999999 88999999888753
No 17
>PF12854 PPR_1: PPR repeat
Probab=98.18 E-value=1.8e-06 Score=61.68 Aligned_cols=33 Identities=15% Similarity=0.072 Sum_probs=31.3
Q ss_pred cCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHH
Q 007864 519 DYIEANEFTI-DLCSACLAGDDLRKGGELHHKTL 551 (587)
Q Consensus 519 ~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~ 551 (587)
+|+.||.+|| +||+++|+.|++++|.+++++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 5899999999 99999999999999999999983
No 18
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.07 E-value=5.4e-06 Score=57.64 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=32.6
Q ss_pred hhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007864 475 LVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEA 523 (587)
Q Consensus 475 vvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~P 523 (587)
++|||++ |.+|++.|+++.|+++|++|++.|++|
T Consensus 1 v~ty~~l---------------l~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNAL---------------LRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHH---------------HHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999 999999999999999999999999998
No 19
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.99 E-value=6.4e-06 Score=55.97 Aligned_cols=31 Identities=45% Similarity=0.683 Sum_probs=29.5
Q ss_pred hhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007864 476 VAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYI 521 (587)
Q Consensus 476 vTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi 521 (587)
+|||+| |++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~l---------------i~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSL---------------ISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHH---------------HHHHHccchHHHHHHHHHHHhHCcC
Confidence 589999 9999999999999999999999885
No 20
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.87 E-value=1.1e-05 Score=55.80 Aligned_cols=30 Identities=10% Similarity=0.039 Sum_probs=29.1
Q ss_pred Ccchhh-hhcccCCChhHHHHHHHHHhhcccCCC
Q 007864 381 KNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDV 413 (587)
Q Consensus 381 vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv 413 (587)
++||+| .+|++.|++++|.++|++|.+. |+
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~---g~ 31 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLER---GI 31 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHc---CC
Confidence 589999 9999999999999999999999 99
No 21
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.61 E-value=3.8e-05 Score=52.09 Aligned_cols=30 Identities=10% Similarity=0.115 Sum_probs=28.4
Q ss_pred Ccchhh-hhcccCCChhHHHHHHHHHhhcccCCC
Q 007864 381 KNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDV 413 (587)
Q Consensus 381 vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv 413 (587)
++||+| ++|++.|++++|.++|++|++. |+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~---g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRER---GI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHC---cC
Confidence 689999 9999999999999999999998 75
No 22
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.48 E-value=8.3e-05 Score=51.59 Aligned_cols=31 Identities=3% Similarity=-0.032 Sum_probs=29.7
Q ss_pred CCcchhh-hhcccCCChhHHHHHHHHHhhcccCCC
Q 007864 380 AKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDV 413 (587)
Q Consensus 380 ~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv 413 (587)
+++||++ .+|++.|+++.|+++|++|++. |+
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~---gv 32 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQ---GV 32 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CC
Confidence 4789999 9999999999999999999999 99
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.0015 Score=71.01 Aligned_cols=58 Identities=14% Similarity=0.049 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHH
Q 007864 510 LGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRK----GGELHHKTLRTGLHHTEMKAVALGL 567 (587)
Q Consensus 510 l~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~----A~~l~~~M~k~G~~pd~~vynaLIa 567 (587)
.++..||....++||..|| .+|++.++.|+++. |.+++.+|++-|++|...+|--+|.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik 320 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIK 320 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence 5667777777777777777 77777777776554 3456677777777777777766653
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.27 E-value=0.0025 Score=65.18 Aligned_cols=203 Identities=13% Similarity=0.070 Sum_probs=64.9
Q ss_pred CCceEEeccccCC-C-CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhcc--cCCCCCcch
Q 007864 312 EPVGFVVGFPVGS-P-EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKF--VEKDAKNWS 384 (587)
Q Consensus 312 ~Pd~~Ty~sLL~a-c-~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M--~~pd~vtYN 384 (587)
.|+...|-.++.. + ..++.+.|.+.++.+...+-. +...+. .++.. ...++.++ + +.+. ..++...+.
T Consensus 40 ~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~---~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~ 114 (280)
T PF13429_consen 40 PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYE---RLIQL-LQDGDPEEALKLAEKAYERDGDPRYLL 114 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccccc---ccccc-cccccccccccccccccccccccchhh
Confidence 4555555554444 4 478888888888888876543 444566 66665 56677766 3 3332 135566677
Q ss_pred hh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH-HHHHH-HH-------HHHHHHHHhhCc-
Q 007864 385 GP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI-ARLWA-AR-------RDVINGVVSIGE- 453 (587)
Q Consensus 385 sL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty-L~aca-~~-------~~lh~~m~k~~p- 453 (587)
.+ ..|.+.|+++++.+++++..... .. ..|...| ..+-. .. .......++..|
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~--~~--------------~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~ 178 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELP--AA--------------PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD 178 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T-------------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcc--CC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 77 77888888888888888876550 22 3333333 22211 11 333334444455
Q ss_pred cHHHHHHHHHH-----------HHHhcCC---CCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007864 454 YVCVAEILVML-----------LFLDGIK---RPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVD 519 (587)
Q Consensus 454 d~~vynaLI~~-----------~vFd~M~---~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~ 519 (587)
|..+.+.++.. ++++... ..|...|..+ -.+|...|+.++|+..|++...
T Consensus 179 ~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~l---------------a~~~~~lg~~~~Al~~~~~~~~- 242 (280)
T PF13429_consen 179 DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDAL---------------AAAYLQLGRYEEALEYLEKALK- 242 (280)
T ss_dssp -HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHH---------------HHHHHHHT-HHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHH---------------HHHhcccccccccccccccccc-
Confidence 35566666554 1222111 2344556666 8899999999999999999765
Q ss_pred CCCCCHHHH--HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 520 YIEANEFTI--DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 520 Gi~PD~~Ty--sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
..|+..++ .+..++...|+.++|.++..+..+
T Consensus 243 -~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 243 -LNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HSTT-HHHHHHHHHHHT-----------------
T ss_pred -cccccccccccccccccccccccccccccccccc
Confidence 45655554 888999999999999988776543
No 25
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=96.80 E-value=0.0034 Score=73.12 Aligned_cols=211 Identities=13% Similarity=0.077 Sum_probs=126.8
Q ss_pred hhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH-H-HhcccCC----CCCcchhh-hhcccCCChhHHHHHHHHHhh
Q 007864 335 QAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK-R-VKKFVEK----DAKNWSGP-GSYPSTKSFHTNRLQAKRQLR 407 (587)
Q Consensus 335 ~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e-r-Fd~M~~p----d~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~ 407 (587)
.++..+...|+.||.+||. +||.-||..|+++. - |.-|+-+ +-..++++ .+..++++.+.+. +
T Consensus 11 nfla~~e~~gi~PnRvtyq---sLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------e 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQ---SLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------E 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHH---HHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccCCC-------C
Confidence 4678899999999999999 99999999999999 5 6655532 55788999 9888888877653 1
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHH--HHHHHHHHh-hCccHHHHHHHHHH------HHHhcCC-----C
Q 007864 408 RFISDVDSSYLPPEGCPNYKPPDDKFI-ARLWAAR--RDVINGVVS-IGEYVCVAEILVML------LFLDGIK-----R 472 (587)
Q Consensus 408 ~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty-L~aca~~--~~lh~~m~k-~~pd~~vynaLI~~------~vFd~M~-----~ 472 (587)
- .||..|= +++|... -..++...+ +. ...+|.-..+ .++-.+. -
T Consensus 81 p-------------------~aDtyt~Ll~ayr~hGDli~fe~veqdLe--~i~~sfs~~Gvgs~e~~fl~k~~c~p~~l 139 (1088)
T KOG4318|consen 81 P-------------------LADTYTNLLKAYRIHGDLILFEVVEQDLE--SINQSFSDHGVGSPERWFLMKIHCCPHSL 139 (1088)
T ss_pred C-------------------chhHHHHHHHHHHhccchHHHHHHHHHHH--HHHhhhhhhccCcHHHHHHhhcccCcccc
Confidence 1 4555544 7777654 111111111 00 0111111111 1111111 1
Q ss_pred CChh----------hhHHHHHhHHhhcCcCH--H--HHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHH-HHHHHHhc
Q 007864 473 PDLV----------AWSSLLSVHEEWASRRV--V--LVISGFSLNGWYAEALGLFQTMRVDYI-EANEFTI-DLCSACLA 536 (587)
Q Consensus 473 pdvv----------TyNsLI~gy~km~~~dv--v--sLI~gy~k~G~~~eAl~Lf~eM~~~Gi-~PD~~Ty-sLL~ac~~ 536 (587)
||.+ .|-.++.-..++|.-.- . .+|.-..... ....++. .|...+. .||..+| .++.+-..
T Consensus 140 pda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~n--tpvekLl-~~cksl~e~~~s~~l~a~l~~ala 216 (1088)
T KOG4318|consen 140 PDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDN--TPVEKLL-NMCKSLVEAPTSETLHAVLKRALA 216 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCC--chHHHHH-HHHHHhhcCCChHHHHHHHHHHHh
Confidence 2322 35555555555542111 1 1122222211 1222333 3555444 4999999 99999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--------HHHhcCCCCCCCe
Q 007864 537 GDDLRKGGELHHKTLRTGLHHTEMKAVALG--------LISLPDGMPVRVI 579 (587)
Q Consensus 537 ~G~l~~A~~l~~~M~k~G~~pd~~vynaLI--------al~vF~~M~~r~v 579 (587)
.|+++.|+.+..+|.+.|+..+..-+-.|+ ...+..+|.+.+|
T Consensus 217 ag~~d~Ak~ll~emke~gfpir~HyFwpLl~g~~~~q~~e~vlrgmqe~gv 267 (1088)
T KOG4318|consen 217 AGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLGINAAQVFEFVLRGMQEKGV 267 (1088)
T ss_pred cCchhhHHHHHHHHHHcCCCcccccchhhhhcCccchHHHHHHHHHHHhcC
Confidence 999999999999999999988887666665 2355555555543
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.79 E-value=0.04 Score=52.00 Aligned_cols=171 Identities=12% Similarity=0.058 Sum_probs=93.6
Q ss_pred CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhcccCCChhHH
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSYPSTKSFHTN 398 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~G~~eeA 398 (587)
..|+.++|.+.+.+.++.. +.+...+. .+-..|...|+.++ + |++.. ..+...|+.+ ..|.+.|++++|
T Consensus 43 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~---~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A 118 (234)
T TIGR02521 43 EQGDLEVAKENLDKALEHD-PDDYLAYL---ALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQA 118 (234)
T ss_pred HCCCHHHHHHHHHHHHHhC-cccHHHHH---HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHH
Confidence 3566677777776665542 22233444 56666677777776 3 54432 2344556666 777777777777
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHH-HH--HHHHHHH----HHHHHHHHhhCccHHHHHHHHHHHHHhcCC
Q 007864 399 RLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDK-FI--ARLWAAR----RDVINGVVSIGEYVCVAEILVMLLFLDGIK 471 (587)
Q Consensus 399 l~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~-Ty--L~aca~~----~~lh~~m~k~~pd~~vynaLI~~~vFd~M~ 471 (587)
.+.|++..+. .. .|... .+ +..+... .... ..|++..
T Consensus 119 ~~~~~~~~~~---~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~-------------------~~~~~~~ 162 (234)
T TIGR02521 119 MQQFEQAIED---PL--------------YPQPARSLENAGLCALKAGDFDKAE-------------------KYLTRAL 162 (234)
T ss_pred HHHHHHHHhc---cc--------------cccchHHHHHHHHHHHHcCCHHHHH-------------------HHHHHHH
Confidence 7777777654 22 22211 11 1111100 0000 1111110
Q ss_pred --CC-ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHH
Q 007864 472 --RP-DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELH 547 (587)
Q Consensus 472 --~p-dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~ 547 (587)
.| +...|..+ ...+.+.|++++|.+.+++.... ...+...+ .+...+...|+.+++..+.
T Consensus 163 ~~~~~~~~~~~~l---------------a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 163 QIDPQRPESLLEL---------------AELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred HhCcCChHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 11 33455566 67777778888888888777665 22344555 6666666777777777776
Q ss_pred HHHHH
Q 007864 548 HKTLR 552 (587)
Q Consensus 548 ~~M~k 552 (587)
+.+.+
T Consensus 227 ~~~~~ 231 (234)
T TIGR02521 227 AQLQK 231 (234)
T ss_pred HHHHh
Confidence 66644
No 27
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.25 E-value=0.16 Score=58.96 Aligned_cols=205 Identities=12% Similarity=-0.016 Sum_probs=120.8
Q ss_pred CCCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-HhcccC--C-CCCcchhh-hhcccCCChhH
Q 007864 325 PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFVE--K-DAKNWSGP-GSYPSTKSFHT 397 (587)
Q Consensus 325 c~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~~--p-d~vtYNsL-~gy~r~G~~ee 397 (587)
...|+.++|.+.+..+.+.. +.+...+. .+-..|.+.|+.++ . |++... | +...|..+ ..|.+.|+.++
T Consensus 87 l~~g~~~~A~~~l~~~l~~~-P~~~~a~~---~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~e 162 (656)
T PRK15174 87 LASSQPDAVLQVVNKLLAVN-VCQPEDVL---LVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQ 162 (656)
T ss_pred hhcCCHHHHHHHHHHHHHhC-CCChHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHH
Confidence 45788888888888877643 12233445 66677778888877 4 665432 3 45567777 78888888888
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---HHHHHHH------HHHHHHHHhh-C-ccHHHHH----HHH
Q 007864 398 NRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---ARLWAAR------RDVINGVVSI-G-EYVCVAE----ILV 462 (587)
Q Consensus 398 Al~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L~aca~~------~~lh~~m~k~-~-pd~~vyn----aLI 462 (587)
|...++.+... .|+.... +..+... ......+.+. . ++...+. ++.
T Consensus 163 A~~~~~~~~~~-------------------~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~ 223 (656)
T PRK15174 163 AISLARTQAQE-------------------VPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLC 223 (656)
T ss_pred HHHHHHHHHHh-------------------CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 88888877655 3443333 2111111 1222222221 1 1121111 111
Q ss_pred HH-------HHHhcCC--CC-ChhhhHHHHHhHHhhcC-------------------cCHH----HHHHHHHhcCCHHHH
Q 007864 463 ML-------LFLDGIK--RP-DLVAWSSLLSVHEEWAS-------------------RRVV----LVISGFSLNGWYAEA 509 (587)
Q Consensus 463 ~~-------~vFd~M~--~p-dvvTyNsLI~gy~km~~-------------------~dvv----sLI~gy~k~G~~~eA 509 (587)
.. ..|+... .| +...++.+-..|.+.++ |+.. .+-..|.+.|++++|
T Consensus 224 ~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA 303 (656)
T PRK15174 224 AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKA 303 (656)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 11 2233222 12 34455555444444332 2211 567888899999999
Q ss_pred HHHHHHHHhcCCCCCHHH-H-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 510 LGLFQTMRVDYIEANEFT-I-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 510 l~Lf~eM~~~Gi~PD~~T-y-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
+..+++.... .|+... + .+-.++.+.|++++|...+..+.+..
T Consensus 304 ~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 304 IPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999987764 566544 4 77788889999999999999888753
No 28
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.19 E-value=0.064 Score=62.27 Aligned_cols=56 Identities=11% Similarity=0.112 Sum_probs=46.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI--DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty--sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
-..|.+.|++++|+..|+++... .|+...+ .+..++...|+.++|...++...+..
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 88899999999999999998875 5666554 45667889999999999999987753
No 29
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.05 E-value=0.052 Score=49.65 Aligned_cols=72 Identities=13% Similarity=-0.031 Sum_probs=62.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHH-HHHHHHhcCCC--------HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007864 496 VISGFSLNGWYAEALGLFQTMRVDYI-EANEFTI-DLCSACLAGDD--------LRKGGELHHKTLRTGLHHTEMKAVAL 565 (587)
Q Consensus 496 LI~gy~k~G~~~eAl~Lf~eM~~~Gi-~PD~~Ty-sLL~ac~~~G~--------l~~A~~l~~~M~k~G~~pd~~vynaL 565 (587)
.|..+...|++.+...+|+..++.|+ .|...+| .+|.+-++... +-+...++++|+..+++|+..+||.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 37788888999999999999999999 9999999 99999886532 33456789999999999999999998
Q ss_pred HH
Q 007864 566 GL 567 (587)
Q Consensus 566 Ia 567 (587)
+.
T Consensus 111 l~ 112 (120)
T PF08579_consen 111 LG 112 (120)
T ss_pred HH
Confidence 74
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.39 E-value=0.7 Score=50.26 Aligned_cols=80 Identities=11% Similarity=0.004 Sum_probs=60.6
Q ss_pred CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-HhcccC---CCCCcchhh-hhcccCCChhHH
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFVE---KDAKNWSGP-GSYPSTKSFHTN 398 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~~---pd~vtYNsL-~gy~r~G~~eeA 398 (587)
..|+.+.+.+.+.++.+. .|+...+- -+..-..+...|+.+. . +++..+ .+......+ ..|.+.|++++|
T Consensus 130 ~~g~~~~A~~~l~~A~~~--~~~~~~~~-~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 130 QRGDEARANQHLERAAEL--ADNDQLPV-EITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HCCCHHHHHHHHHHHHhc--CCcchHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 689999999999999753 44443222 0022457888999999 4 666553 355677778 999999999999
Q ss_pred HHHHHHHhhc
Q 007864 399 RLQAKRQLRR 408 (587)
Q Consensus 399 l~Lf~eM~~~ 408 (587)
.+++..+.+.
T Consensus 207 ~~~l~~l~k~ 216 (398)
T PRK10747 207 LDILPSMAKA 216 (398)
T ss_pred HHHHHHHHHc
Confidence 9999999988
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=95.22 E-value=0.49 Score=54.23 Aligned_cols=193 Identities=11% Similarity=-0.016 Sum_probs=107.2
Q ss_pred CCCCCccchhhHHHHHHcCCCCC-CCCCCchhHHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhcccCCChhH
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSL-PNFKGMPICLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSYPSTKSFHT 397 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd-~~tynipiaLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~G~~ee 397 (587)
..|++++|...+...++. .|+ ...|. .+-..|...|++++ . |++.. ..+...|..+ ..|...|++++
T Consensus 343 ~~g~~~eA~~~~~kal~l--~P~~~~~~~---~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 343 LKGKHLEALADLSKSIEL--DPRVTQSYI---KRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred HcCCHHHHHHHHHHHHHc--CCCcHHHHH---HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 467777777777776654 233 22344 55666667777777 4 55432 2345667777 77777777777
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---HHHHHHH-------HHHHHHHHhhCc-cHHHHHHHHHH--
Q 007864 398 NRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---ARLWAAR-------RDVINGVVSIGE-YVCVAEILVML-- 464 (587)
Q Consensus 398 Al~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L~aca~~-------~~lh~~m~k~~p-d~~vynaLI~~-- 464 (587)
|++.|++..+. .|+.... +..+... ...+....+..| +..+++.+-..
T Consensus 418 A~~~~~kal~l-------------------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 418 AGKDYQKSIDL-------------------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLL 478 (615)
T ss_pred HHHHHHHHHHc-------------------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 77777777655 5543332 1111111 222222223222 33334333222
Q ss_pred ---------HHHhcCC--CCC--hhhhHHHHHhHHhhcCcCHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HH-
Q 007864 465 ---------LFLDGIK--RPD--LVAWSSLLSVHEEWASRRVV-LVISGFSLNGWYAEALGLFQTMRVDYIEANEF-TI- 528 (587)
Q Consensus 465 ---------~vFd~M~--~pd--vvTyNsLI~gy~km~~~dvv-sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~-Ty- 528 (587)
+.|+.-. .|+ ....+.+ ..+ ..+.-|-..|++++|.+++++-... .|+.. .+
T Consensus 479 ~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~----------~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~ 546 (615)
T TIGR00990 479 DQNKFDEAIEKFDTAIELEKETKPMYMNVL----------PLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVA 546 (615)
T ss_pred HccCHHHHHHHHHHHHhcCCccccccccHH----------HHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHH
Confidence 2222211 111 0000100 000 0022334469999999999987654 45554 56
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 529 DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 529 sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
.+...+...|++++|.+.++...+..
T Consensus 547 ~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 547 TMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 89999999999999999999987754
No 32
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=95.20 E-value=1.5 Score=41.14 Aligned_cols=149 Identities=10% Similarity=0.032 Sum_probs=90.7
Q ss_pred CCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---H-HHHHHH------HHHHHHH
Q 007864 380 AKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---A-RLWAAR------RDVINGV 448 (587)
Q Consensus 380 ~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L-~aca~~------~~lh~~m 448 (587)
...|..+ ..|.+.|++++|.+.|++..+. .|+.... + ..+... ...+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 91 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH-------------------DPDDYLAYLALALYYQQLGELEKAEDSFRRA 91 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567778 8889999999999999998766 4554333 1 111111 2233333
Q ss_pred HhhCc-cHHHHHHHHHH-----------HHHhcCCC----C-ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHH
Q 007864 449 VSIGE-YVCVAEILVML-----------LFLDGIKR----P-DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALG 511 (587)
Q Consensus 449 ~k~~p-d~~vynaLI~~-----------~vFd~M~~----p-dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~ 511 (587)
.+..| +...+..+... +.|++... + +...|..+ -..|.+.|++++|.+
T Consensus 92 l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l---------------~~~~~~~g~~~~A~~ 156 (234)
T TIGR02521 92 LTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENA---------------GLCALKAGDFDKAEK 156 (234)
T ss_pred HhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 33222 33333332221 33333221 1 22344445 777889999999999
Q ss_pred HHHHHHhcCCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007864 512 LFQTMRVDYIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565 (587)
Q Consensus 512 Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaL 565 (587)
.|++.... .|+ ...+ .+...+...|++++|...++...+. ...+...+..+
T Consensus 157 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ 209 (234)
T TIGR02521 157 YLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLG 209 (234)
T ss_pred HHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 99987764 343 4567 8888888999999999999988876 23344444333
No 33
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=94.99 E-value=0.61 Score=53.46 Aligned_cols=200 Identities=10% Similarity=-0.018 Sum_probs=124.4
Q ss_pred CCCccchhhHHHHHHcC-CCC-CCCCCCchhHHHHhhhcCCcHHH--H-Hhccc--CCC-CCcchhh-hhcccCCChhHH
Q 007864 328 DTPKQFSQAHVKAFLSK-LDS-LPNFKGMPICLVNEYGTSKNLAK--R-VKKFV--EKD-AKNWSGP-GSYPSTKSFHTN 398 (587)
Q Consensus 328 g~l~~A~~l~~~M~~~G-l~p-d~~tynipiaLI~~y~k~G~l~e--r-Fd~M~--~pd-~vtYNsL-~gy~r~G~~eeA 398 (587)
+.+++|.+.+...+..+ ..| +...++ .+-..|...|+.++ . |++.. .|+ ..+|..+ ..|...|++++|
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~---~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALN---LRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 46778888888888765 233 234456 66677788999999 5 77654 343 5588888 999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHH-HH--HHH-HHHH------HHHHHHHHhhCcc-HHHHHHHHHH---
Q 007864 399 RLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDK-FI--ARL-WAAR------RDVINGVVSIGEY-VCVAEILVML--- 464 (587)
Q Consensus 399 l~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~-Ty--L~a-ca~~------~~lh~~m~k~~pd-~~vynaLI~~--- 464 (587)
++.|++..+. .|+.. .| +.. +... ...+...++..|+ ...+..|-..
T Consensus 385 ~~~~~~al~~-------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 385 EEDFDKALKL-------------------NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHh-------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence 9999998776 55433 33 221 1111 3333333334453 3333322221
Q ss_pred --------HHHhcCC--CC-ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CCCHHHH
Q 007864 465 --------LFLDGIK--RP-DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYI-----EANEFTI 528 (587)
Q Consensus 465 --------~vFd~M~--~p-dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi-----~PD~~Ty 528 (587)
..|++.. .| +...|+.+ -..|...|++++|.+.|++-....- ..+...+
T Consensus 446 ~g~~~eA~~~~~~al~~~P~~~~~~~~l---------------g~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNFPEAPDVYNYY---------------GELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHH---------------HHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 3444332 23 45677777 8889999999999999998665321 1111111
Q ss_pred --HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 007864 529 --DLCSACLAGDDLRKGGELHHKTLRTGLHHTE-MKAVALG 566 (587)
Q Consensus 529 --sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~-~vynaLI 566 (587)
..+..+...|++++|.+++.+.++.. |+. ..+..|.
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la 549 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMA 549 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHH
Confidence 12222334699999999999988764 433 3445554
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=94.75 E-value=0.21 Score=54.42 Aligned_cols=55 Identities=13% Similarity=0.096 Sum_probs=47.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTL 551 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~ 551 (587)
=..+.+.|++++|.+.|+.-......||..++ .+-..+.+.|+.++|.+++++-.
T Consensus 342 g~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 342 GQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66688999999999999964444568999999 99999999999999999998754
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=94.60 E-value=0.79 Score=55.91 Aligned_cols=186 Identities=9% Similarity=-0.038 Sum_probs=112.1
Q ss_pred CCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-HhcccC--CCCCcchhh-hhcccCCChhHHHHH
Q 007864 328 DTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFVE--KDAKNWSGP-GSYPSTKSFHTNRLQ 401 (587)
Q Consensus 328 g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~~--pd~vtYNsL-~gy~r~G~~eeAl~L 401 (587)
++.++|...+....... |+....- .+...+.+.|+.++ . |+++.. |+...+..+ ..+.+.|+.++|.+.
T Consensus 490 ~~~~eAi~a~~~Al~~~--Pd~~~~L---~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQ--PDAWQHR---AVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred CCcHHHHHHHHHHHHhC--CchHHHH---HHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHH
Confidence 56666777665555433 4432221 33334457888888 4 765542 444456666 777888888888888
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---H-HHH---HHH---HHHHHHHHhhCccHHHHHHHHHH-------
Q 007864 402 AKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---A-RLW---AAR---RDVINGVVSIGEYVCVAEILVML------- 464 (587)
Q Consensus 402 f~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L-~ac---a~~---~~lh~~m~k~~pd~~vynaLI~~------- 464 (587)
|++-.+. .|+.... + ... ++. ...+....+..|+...+..+-..
T Consensus 565 l~qAL~l-------------------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~ 625 (987)
T PRK09782 565 LQQAEQR-------------------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNV 625 (987)
T ss_pred HHHHHhc-------------------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCH
Confidence 8887766 4444333 1 111 111 22223333355665444444322
Q ss_pred ----HHHhcCC--CC-ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHh
Q 007864 465 ----LFLDGIK--RP-DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI--DLCSACL 535 (587)
Q Consensus 465 ----~vFd~M~--~p-dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty--sLL~ac~ 535 (587)
..|++.. .| +...++.+ -..+.+.|+.++|++.|++-.+ ..|+.... .+-.++.
T Consensus 626 deA~~~l~~AL~l~Pd~~~a~~nL---------------G~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 626 PAAVSDLRAALELEPNNSNYQAAL---------------GYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH---------------HHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 2333322 23 44456666 6678889999999999888766 35665544 8888888
Q ss_pred cCCCHHHHHHHHHHHHHcC
Q 007864 536 AGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 536 ~~G~l~~A~~l~~~M~k~G 554 (587)
..|++++|...++..++..
T Consensus 689 ~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 689 RLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HCCCHHHHHHHHHHHHhcC
Confidence 8999999999888887643
No 36
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=94.48 E-value=0.21 Score=50.51 Aligned_cols=48 Identities=13% Similarity=0.005 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCC-HHHHHHHHHHHHH
Q 007864 505 WYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDD-LRKGGELHHKTLR 552 (587)
Q Consensus 505 ~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~-l~~A~~l~~~M~k 552 (587)
+-+-|++++++|...|+.||..|+ .|++.+++.+. +.+.+++.=.|-|
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 456699999999999999999999 99999998876 4555555555544
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.47 E-value=0.35 Score=55.30 Aligned_cols=117 Identities=10% Similarity=-0.052 Sum_probs=76.5
Q ss_pred CCCCCccchhhHHHHHHcC--CCCCCCCCCchhHHHHhhhcCCcHHH--H-HhcccCCCCCcchhh-hhcccCCChhHHH
Q 007864 326 EKDTPKQFSQAHVKAFLSK--LDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFVEKDAKNWSGP-GSYPSTKSFHTNR 399 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~G--l~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~~pd~vtYNsL-~gy~r~G~~eeAl 399 (587)
..++.++++++|+.+.+.. ..-+..+|+ +.+--+=+.-.+.. + +-++.+-...||-++ +.|.-.++.+.|+
T Consensus 365 El~~Y~~a~~~F~~~r~~~p~rv~~meiyS---T~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Ai 441 (638)
T KOG1126|consen 365 ELIEYDQAERIFSLVRRIEPYRVKGMEIYS---TTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAI 441 (638)
T ss_pred HHHHHHHHHHHHHHHHhhccccccchhHHH---HHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHH
Confidence 5778889999999987653 234666777 66654433322222 2 333334456899999 9999999999999
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCCCCCCCC-CHHHH-HHHHHHH--HHHHHHHHh----hCccHHHHHHHHHH
Q 007864 400 LQAKRQLRRFISDVDSSYLPPEGCPNYKPP-DDKFI-ARLWAAR--RDVINGVVS----IGEYVCVAEILVML 464 (587)
Q Consensus 400 ~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~P-d~~Ty-L~aca~~--~~lh~~m~k----~~pd~~vynaLI~~ 464 (587)
+.|++-.+. .| ..++| |.++-.. .+....|.. +..|.--||+.-..
T Consensus 442 k~f~RAiQl-------------------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGl 495 (638)
T KOG1126|consen 442 KCFKRAIQL-------------------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGL 495 (638)
T ss_pred HHHHHhhcc-------------------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhh
Confidence 999987755 55 66677 5554433 333333322 66777778876554
No 38
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=94.17 E-value=1.5 Score=54.19 Aligned_cols=188 Identities=10% Similarity=0.082 Sum_probs=119.8
Q ss_pred CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-HhcccC--CCC---Ccch------------h
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFVE--KDA---KNWS------------G 385 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~~--pd~---vtYN------------s 385 (587)
..|++++|...+.+.++.. +-|...+. .|-..|.+.|+.++ . |++..+ |+. ..|. .
T Consensus 281 ~~g~~~~A~~~l~~aL~~~-P~~~~a~~---~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRAN-PKDSEALG---ALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 5789999999999998753 22455666 78889999999999 5 776542 332 1221 2
Q ss_pred h-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---HHHHHHH-------HHHHHHHHhhCcc
Q 007864 386 P-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---ARLWAAR-------RDVINGVVSIGEY 454 (587)
Q Consensus 386 L-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L~aca~~-------~~lh~~m~k~~pd 454 (587)
. ..+.+.|++++|++.|++..+. .|+...- +..+... ...+..+.+..|+
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~-------------------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQV-------------------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 2 4567899999999999999987 5654332 2211111 3444444443343
Q ss_pred -HHHHHHHHHH----------HHHhcCCCCC------------hhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHH
Q 007864 455 -VCVAEILVML----------LFLDGIKRPD------------LVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALG 511 (587)
Q Consensus 455 -~~vynaLI~~----------~vFd~M~~pd------------vvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~ 511 (587)
...+..|... ..++.+.... ...|.. +-..+...|++++|++
T Consensus 418 ~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~---------------~a~~~~~~g~~~eA~~ 482 (1157)
T PRK11447 418 NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQ---------------QAEALENQGKWAQAAE 482 (1157)
T ss_pred CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHH---------------HHHHHHHCCCHHHHHH
Confidence 3333333221 1111111100 011222 2567788999999999
Q ss_pred HHHHHHhcCCCCCH-HHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 512 LFQTMRVDYIEANE-FTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 512 Lf~eM~~~Gi~PD~-~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
.|++..+. .||. ..+ .+-..+.+.|+.++|...++.+++.
T Consensus 483 ~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 483 LQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99988764 5654 345 8888899999999999999998874
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=94.02 E-value=3.8 Score=44.54 Aligned_cols=213 Identities=8% Similarity=0.006 Sum_probs=130.8
Q ss_pred CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhh-hcCCcHHH--H-HhcccC--CCCCcch--hh-hhcccCCChh
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEY-GTSKNLAK--R-VKKFVE--KDAKNWS--GP-GSYPSTKSFH 396 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y-~k~G~l~e--r-Fd~M~~--pd~vtYN--sL-~gy~r~G~~e 396 (587)
..|+++.|++......+.+ ++...+- .+.... .+.|+.++ . |.++.+ ||...+- .. .-+.+.|+++
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~---llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNY---LLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHH---HHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHH
Confidence 3689998887666544432 1222222 232333 68899988 5 887764 5544333 33 6778899999
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH----HHHHHHH------HHHHHHHHh---hCccH------HH
Q 007864 397 TNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI----ARLWAAR------RDVINGVVS---IGEYV------CV 457 (587)
Q Consensus 397 eAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty----L~aca~~------~~lh~~m~k---~~pd~------~v 457 (587)
+|++.++++.+. .|+.... ...+.+. ..+...+.+ ..++. .+
T Consensus 171 ~Al~~l~~~~~~-------------------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a 231 (398)
T PRK10747 171 AARHGVDKLLEV-------------------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQA 231 (398)
T ss_pred HHHHHHHHHHhc-------------------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 999999999887 6766544 4444443 333344444 22221 12
Q ss_pred HHHHHHH-----------HHHhcCCC--C-ChhhhHHHHHhHHhhc---------------CcCHH-HHHHHHHhcCCHH
Q 007864 458 AEILVML-----------LFLDGIKR--P-DLVAWSSLLSVHEEWA---------------SRRVV-LVISGFSLNGWYA 507 (587)
Q Consensus 458 ynaLI~~-----------~vFd~M~~--p-dvvTyNsLI~gy~km~---------------~~dvv-sLI~gy~k~G~~~ 507 (587)
|..++.. ++++..++ | +...+-++..++.+.+ .++.- .++.+.+..|+.+
T Consensus 232 ~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~ 311 (398)
T PRK10747 232 WIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPE 311 (398)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChH
Confidence 2222221 44445542 2 4444444444444322 22322 5677777778889
Q ss_pred HHHHHHHHHHhcCCCCCHHHH--HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 508 EALGLFQTMRVDYIEANEFTI--DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 508 eAl~Lf~eM~~~Gi~PD~~Ty--sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
++++..++..+. .||...+ .+=..|.+.+++++|++.++.+.+. .|+...+..|.
T Consensus 312 ~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La 368 (398)
T PRK10747 312 QLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLA 368 (398)
T ss_pred HHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 998888887754 5666654 7777788899999999999988875 58877766664
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=93.99 E-value=0.16 Score=51.96 Aligned_cols=192 Identities=13% Similarity=0.023 Sum_probs=58.7
Q ss_pred CCCCCccchhhHHHHHHcCC-CCCCCCCCchhHHHHhhhcCCcHHH--H-HhcccC---CCCCcchhhhhcccCCChhHH
Q 007864 326 EKDTPKQFSQAHVKAFLSKL-DSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFVE---KDAKNWSGPGSYPSTKSFHTN 398 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl-~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~~---pd~vtYNsL~gy~r~G~~eeA 398 (587)
..|+++.|.+++.......- ..|...|. .+-...-..++.++ . ++++.. -+...|..+..+.+.+++++|
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~---~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A 96 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWR---LLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEA 96 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 68999999998866554442 33444555 44455556677777 4 776654 244566666333789999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHH---HHHHHHH---Hh---hCccHHHHHHHHHH----
Q 007864 399 RLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI-ARLWAAR---RDVINGV---VS---IGEYVCVAEILVML---- 464 (587)
Q Consensus 399 l~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty-L~aca~~---~~lh~~m---~k---~~pd~~vynaLI~~---- 464 (587)
.+++.+.-++ .- .|+.... +..+-+. ..+...+ .. ...|...|..+-..
T Consensus 97 ~~~~~~~~~~---~~--------------~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~ 159 (280)
T PF13429_consen 97 LKLAEKAYER---DG--------------DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL 159 (280)
T ss_dssp --------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC
T ss_pred cccccccccc---cc--------------ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 9999877665 22 2333222 4433332 2222222 22 23344444433322
Q ss_pred -------HHHhcCC--CC-ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHH
Q 007864 465 -------LFLDGIK--RP-DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSA 533 (587)
Q Consensus 465 -------~vFd~M~--~p-dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~a 533 (587)
+.+++.. .| |....+.+ +..+...|+.+++.++++...... ..|...+ .+-.+
T Consensus 160 G~~~~A~~~~~~al~~~P~~~~~~~~l---------------~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~ 223 (280)
T PF13429_consen 160 GDPDKALRDYRKALELDPDDPDARNAL---------------AWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAA 223 (280)
T ss_dssp CHHHHHHHHHHHHHHH-TT-HHHHHHH---------------HHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHH---------------HHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHH
Confidence 3333332 34 35556666 888888899998888888877654 3444555 88888
Q ss_pred HhcCCCHHHHHHHHHHHHHc
Q 007864 534 CLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 534 c~~~G~l~~A~~l~~~M~k~ 553 (587)
+...|+.++|..++....+.
T Consensus 224 ~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHT-HHHHHHHHHHHHHH
T ss_pred hccccccccccccccccccc
Confidence 88889999999999888774
No 41
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=93.72 E-value=0.69 Score=54.73 Aligned_cols=195 Identities=10% Similarity=0.043 Sum_probs=121.7
Q ss_pred CCCCCccchhhHHHHHHcCCC-CCCCCCCchhHHHHhhhcCCcHHH--H-HhcccC--CCC-----Ccchhh-hhcccCC
Q 007864 326 EKDTPKQFSQAHVKAFLSKLD-SLPNFKGMPICLVNEYGTSKNLAK--R-VKKFVE--KDA-----KNWSGP-GSYPSTK 393 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~-pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~~--pd~-----vtYNsL-~gy~r~G 393 (587)
..|+.++|...+..+.+.+-. |+- . ...+-..|...|+.++ . |+++.. |+. ..+..+ .++.+.|
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a---~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW-A---QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH-H---HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 468899999999999887521 221 1 1146678999999999 5 777643 221 234556 6889999
Q ss_pred ChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHH--HH--HH--HHHHHHHHHHHHHhhCccHHHHHHHHHHHHH
Q 007864 394 SFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDK--FI--AR--LWAARRDVINGVVSIGEYVCVAEILVMLLFL 467 (587)
Q Consensus 394 ~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~--Ty--L~--aca~~~~lh~~m~k~~pd~~vynaLI~~~vF 467 (587)
++++|.++++++.+. .-+.+. ..|. ....||.. .. +. .+......-+.+ +.+
T Consensus 325 ~~~eA~~~l~~~~~~---~P~~~~--~~~~-~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~----------------~~l 382 (765)
T PRK10049 325 NYPGALTVTAHTINN---SPPFLR--LYGS-PTSIPNDDWLQGQSLLSQVAKYSNDLPQAE----------------MRA 382 (765)
T ss_pred cHHHHHHHHHHHhhc---CCceEe--ecCC-CCCCCCchHHHHHHHHHHHHHHcCCHHHHH----------------HHH
Confidence 999999999999876 100000 0000 00134421 11 11 111110000000 233
Q ss_pred hcCC--CC-ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHhcCCCHHH
Q 007864 468 DGIK--RP-DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI--DLCSACLAGDDLRK 542 (587)
Q Consensus 468 d~M~--~p-dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty--sLL~ac~~~G~l~~ 542 (587)
+++. .| |...|..+ ...+...|+.++|++.+++-.. ..||...+ .........|++++
T Consensus 383 ~~al~~~P~n~~l~~~l---------------A~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~ 445 (765)
T PRK10049 383 RELAYNAPGNQGLRIDY---------------ASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQ 445 (765)
T ss_pred HHHHHhCCCCHHHHHHH---------------HHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHH
Confidence 3322 13 45677777 8899999999999999997766 56887655 77777888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHH
Q 007864 543 GGELHHKTLRTGLHHTEMKAVAL 565 (587)
Q Consensus 543 A~~l~~~M~k~G~~pd~~vynaL 565 (587)
|.++++.+++. .|+....-.|
T Consensus 446 A~~~~~~ll~~--~Pd~~~~~~~ 466 (765)
T PRK10049 446 MDVLTDDVVAR--EPQDPGVQRL 466 (765)
T ss_pred HHHHHHHHHHh--CCCCHHHHHH
Confidence 99999999884 4554433333
No 42
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=93.55 E-value=0.55 Score=47.63 Aligned_cols=88 Identities=11% Similarity=0.047 Sum_probs=72.2
Q ss_pred HHHhcC--CCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhc
Q 007864 465 LFLDGI--KRPDLVAWSSLLSVHEEWASRRVVLVISGFSLN-----GWYAEALGLFQTMRVDYIEANEFTI-DLCSACLA 536 (587)
Q Consensus 465 ~vFd~M--~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~-----G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~ 536 (587)
..|+.. ..+|-.+|..+ |+.|.+. |.++=...-++.|.+-|+.-|..+| .||+.+-+
T Consensus 35 ~~f~~~~~~~k~K~~F~~~---------------V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEA---------------VDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred HHHHHHhhccccHHHHHHH---------------HHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 566665 56888899999 6666544 6777777788899999999999999 99998775
Q ss_pred CC----------------CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007864 537 GD----------------DLRKGGELHHKTLRTGLHHTEMKAVALGL 567 (587)
Q Consensus 537 ~G----------------~l~~A~~l~~~M~k~G~~pd~~vynaLIa 567 (587)
.. +-+-|..++++|...|+-||..++..|+.
T Consensus 100 g~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~ 146 (228)
T PF06239_consen 100 GKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLN 146 (228)
T ss_pred CCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 22 34568999999999999999999999983
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=93.54 E-value=2.6 Score=45.88 Aligned_cols=204 Identities=9% Similarity=-0.047 Sum_probs=124.1
Q ss_pred CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-HhcccC--C-CCCcchhh-hhcccCCChhHH
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFVE--K-DAKNWSGP-GSYPSTKSFHTN 398 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~~--p-d~vtYNsL-~gy~r~G~~eeA 398 (587)
..|+.+.+.+.+.+..+.. |+.... +.......+...|+.++ . |+++.+ | |...+-.+ ..|.+.|++++|
T Consensus 130 ~~g~~~~A~~~l~~a~~~~--p~~~l~-~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a 206 (409)
T TIGR00540 130 QRGDEARANQHLEEAAELA--GNDNIL-VEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQAL 206 (409)
T ss_pred HCCCHHHHHHHHHHHHHhC--CcCchH-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH
Confidence 5799999999999887543 443211 01134677778999998 4 777653 4 55677788 999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHH-H--HHHHHHH----------HHHHHHHHh----hCccHHHHHHH
Q 007864 399 RLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKF-I--ARLWAAR----------RDVINGVVS----IGEYVCVAEIL 461 (587)
Q Consensus 399 l~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~T-y--L~aca~~----------~~lh~~m~k----~~pd~~vynaL 461 (587)
.+++....+. ++ .+.... - ..+.... ..+...... ...+...+-.+
T Consensus 207 ~~~l~~l~k~---~~--------------~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~ 269 (409)
T TIGR00540 207 DDIIDNMAKA---GL--------------FDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIAL 269 (409)
T ss_pred HHHHHHHHHc---CC--------------CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHH
Confidence 9999999988 66 322222 1 2222111 111111111 11244444433
Q ss_pred HHH-----------HHHhcCC--CCChhh---hHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 007864 462 VML-----------LFLDGIK--RPDLVA---WSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANE 525 (587)
Q Consensus 462 I~~-----------~vFd~M~--~pdvvT---yNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~ 525 (587)
... ++.++.. .||... +... .......++.+++++.++.-.+ ..||.
T Consensus 270 a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~---------------~~~~l~~~~~~~~~~~~e~~lk--~~p~~ 332 (409)
T TIGR00540 270 AEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCL---------------PIPRLKPEDNEKLEKLIEKQAK--NVDDK 332 (409)
T ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHH---------------HhhhcCCCChHHHHHHHHHHHH--hCCCC
Confidence 333 2222211 132221 1111 2233445778888888877554 35666
Q ss_pred H--HH--HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 526 F--TI--DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 526 ~--Ty--sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
. .+ ++=..|.+.|++++|++.++........||...+..|.
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La 377 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAA 377 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHH
Confidence 6 55 77778889999999999999655555678888877775
No 44
>PRK12370 invasion protein regulator; Provisional
Probab=93.36 E-value=0.44 Score=54.12 Aligned_cols=168 Identities=12% Similarity=-0.007 Sum_probs=103.9
Q ss_pred CCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc--CC-CCCcchhh-hhcccCCChhHHH
Q 007864 327 KDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV--EK-DAKNWSGP-GSYPSTKSFHTNR 399 (587)
Q Consensus 327 ~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~--~p-d~vtYNsL-~gy~r~G~~eeAl 399 (587)
.++.++|...+.+.++.. +-+...+. .+=..+...|+.++ . |++.. .| +...|..+ ..|.+.|++++|+
T Consensus 317 ~~~~~~A~~~~~~Al~ld-P~~~~a~~---~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 317 QNAMIKAKEHAIKATELD-HNNPQALG---LLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred chHHHHHHHHHHHHHhcC-CCCHHHHH---HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345677888887776653 12334455 55566778888888 5 77654 34 45578888 8999999999999
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH----HHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCC---C
Q 007864 400 LQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI----ARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIK---R 472 (587)
Q Consensus 400 ~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty----L~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~---~ 472 (587)
+.|++..+. .|+...+ ...+..... ++... ..+++.. .
T Consensus 393 ~~~~~Al~l-------------------~P~~~~~~~~~~~~~~~~g~-~eeA~---------------~~~~~~l~~~~ 437 (553)
T PRK12370 393 QTINECLKL-------------------DPTRAAAGITKLWITYYHTG-IDDAI---------------RLGDELRSQHL 437 (553)
T ss_pred HHHHHHHhc-------------------CCCChhhHHHHHHHHHhccC-HHHHH---------------HHHHHHHHhcc
Confidence 999998876 5553322 111111100 01110 2222221 2
Q ss_pred C-ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHhcCCCHHHHHHHHHH
Q 007864 473 P-DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI--DLCSACLAGDDLRKGGELHHK 549 (587)
Q Consensus 473 p-dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty--sLL~ac~~~G~l~~A~~l~~~ 549 (587)
| +...|..+ -..|...|+.++|...++++... .|+..+. .+-..+...| +++...++.
T Consensus 438 p~~~~~~~~l---------------a~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ 498 (553)
T PRK12370 438 QDNPILLSMQ---------------VMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIRE 498 (553)
T ss_pred ccCHHHHHHH---------------HHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHH
Confidence 3 33345666 67788999999999999887543 5676666 4444566667 477776666
Q ss_pred HHH
Q 007864 550 TLR 552 (587)
Q Consensus 550 M~k 552 (587)
+.+
T Consensus 499 ll~ 501 (553)
T PRK12370 499 FLE 501 (553)
T ss_pred HHH
Confidence 655
No 45
>PRK14574 hmsH outer membrane protein; Provisional
Probab=92.93 E-value=1.6 Score=52.21 Aligned_cols=92 Identities=9% Similarity=0.021 Sum_probs=64.2
Q ss_pred CCceEEeccccCC---C-CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-HhcccC--CCCCc
Q 007864 312 EPVGFVVGFPVGS---P-EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFVE--KDAKN 382 (587)
Q Consensus 312 ~Pd~~Ty~sLL~a---c-~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~~--pd~vt 382 (587)
.|+...+..++.. . ..|+++.|.+++.++++..-. |...+. .|...|...++.++ . +++..+ |+...
T Consensus 96 ~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~---gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~ 171 (822)
T PRK14574 96 SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLIS---GMIMTQADAGRGGVVLKQATELAERDPTVQN 171 (822)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHH---HHHHHHhhcCCHHHHHHHHHHhcccCcchHH
Confidence 5655555555422 2 479999999999999876422 345555 78888999999998 5 777764 55445
Q ss_pred chhhhhccc--CCChhHHHHHHHHHhhc
Q 007864 383 WSGPGSYPS--TKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 383 YNsL~gy~r--~G~~eeAl~Lf~eM~~~ 408 (587)
|-. .+|.. .++..+|++.+++|.+.
T Consensus 172 ~l~-layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 172 YMT-LSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHH-HHHHHHhcchHHHHHHHHHHHHHh
Confidence 523 44444 55666699999999988
No 46
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=92.83 E-value=0.31 Score=54.04 Aligned_cols=68 Identities=12% Similarity=0.058 Sum_probs=62.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVA 564 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vyna 564 (587)
|..|.+.|..++|+++++.=..-|+.||.+|| .||+.+.+.|++..|.++...|...+.-.+..|+..
T Consensus 110 vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L 178 (429)
T PF10037_consen 110 VRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQAL 178 (429)
T ss_pred HHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHH
Confidence 99999999999999999998999999999999 999999999999999999999998887766666543
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.58 E-value=1.7 Score=48.51 Aligned_cols=182 Identities=12% Similarity=0.013 Sum_probs=116.9
Q ss_pred CCCCCccchhhHHHHHHcCC--CCCCCCCCchhHHHHhhhcCCcHHH--H-HhcccCCCCCcchhh-hhcccCCChhHHH
Q 007864 326 EKDTPKQFSQAHVKAFLSKL--DSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFVEKDAKNWSGP-GSYPSTKSFHTNR 399 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl--~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~~pd~vtYNsL-~gy~r~G~~eeAl 399 (587)
...++++|..+|+++.+..- .-|.-+|+ -++-.--.+..+.- . .-.+.+=-.-|...+ +-|+-.++.++|.
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlyS---N~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv 350 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYS---NVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAV 350 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHh---HHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHH
Confidence 58899999999999998841 12555666 55533333333333 2 233333345677778 8888888999999
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH--HHHHHHHHHHHHHHHh--hCccHHHHHHHHHH-----------
Q 007864 400 LQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI--ARLWAARRDVINGVVS--IGEYVCVAEILVML----------- 464 (587)
Q Consensus 400 ~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty--L~aca~~~~lh~~m~k--~~pd~~vynaLI~~----------- 464 (587)
..|++-.+. .|....- |-+ |+.|.- ...-+..|+.-|+.
T Consensus 351 ~YFkRALkL-------------------Np~~~~aWTLmG-------HEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGL 404 (559)
T KOG1155|consen 351 MYFKRALKL-------------------NPKYLSAWTLMG-------HEYVEMKNTHAAIESYRRAVDINPRDYRAWYGL 404 (559)
T ss_pred HHHHHHHhc-------------------CcchhHHHHHhh-------HHHHHhcccHHHHHHHHHHHhcCchhHHHHhhh
Confidence 999988765 3322211 111 111110 11111222222222
Q ss_pred -HHHhcCC---------------CC-ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 007864 465 -LFLDGIK---------------RP-DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT 527 (587)
Q Consensus 465 -~vFd~M~---------------~p-dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~T 527 (587)
+.++-|. .| |...|.+| =..|.+.++.++|.+-|.+-...|=. +...
T Consensus 405 GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aL---------------G~CY~kl~~~~eAiKCykrai~~~dt-e~~~ 468 (559)
T KOG1155|consen 405 GQAYEIMKMHFYALYYFQKALELKPNDSRLWVAL---------------GECYEKLNRLEEAIKCYKRAILLGDT-EGSA 468 (559)
T ss_pred hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHH---------------HHHHHHhccHHHHHHHHHHHHhcccc-chHH
Confidence 2222221 23 78889999 99999999999999999998876633 6678
Q ss_pred H-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 528 I-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 528 y-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
| .|-+.+-+.++.++|.+.+..-++
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8 999999999999999998876655
No 48
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=92.58 E-value=0.93 Score=35.17 Aligned_cols=55 Identities=20% Similarity=0.088 Sum_probs=33.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
-..|...|++++|.+.|++.....- .+..++ .+...+...|+.++|...+....+
T Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 41 AAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 4555666777777777766554331 122345 666666667777777776666544
No 49
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=92.23 E-value=5 Score=47.58 Aligned_cols=87 Identities=10% Similarity=0.008 Sum_probs=65.8
Q ss_pred EeccccCC-CCCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc--CC-CCCcchhh-hh
Q 007864 317 VVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV--EK-DAKNWSGP-GS 388 (587)
Q Consensus 317 Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~--~p-d~vtYNsL-~g 388 (587)
.+..+-.+ -..|++++|.+++.+.++.. +.+...+. .+...+.+.|+.++ . +++.. .| +.. |..+ ..
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~---~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~ 125 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQR---GLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYV 125 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH---HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH
Confidence 34455444 36899999999999987652 22233445 78888999999999 4 66553 23 455 8889 99
Q ss_pred cccCCChhHHHHHHHHHhhc
Q 007864 389 YPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 389 y~r~G~~eeAl~Lf~eM~~~ 408 (587)
+.+.|+.++|+..+++..+.
T Consensus 126 l~~~g~~~~Al~~l~~al~~ 145 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPR 145 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987
No 50
>PRK14574 hmsH outer membrane protein; Provisional
Probab=91.96 E-value=6.9 Score=47.07 Aligned_cols=235 Identities=11% Similarity=-0.004 Sum_probs=139.5
Q ss_pred hccCchHHHHHHHHHHhcCCCCce--EEeccccCC-CCCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcH
Q 007864 292 ESTFFMEDMEEQMLNIKEKFEPVG--FVVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNL 368 (587)
Q Consensus 292 ~s~k~~eal~~~~~m~~~G~~Pd~--~Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l 368 (587)
..+...+++..+.+.++ ..|+. ..+ .++.. ...|+.++|...+++.. .|+...+..-.++...|...|+.
T Consensus 46 r~Gd~~~Al~~L~qaL~--~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 46 RAGDTAPVLDYLQEESK--AGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred hCCCHHHHHHHHHHHHh--hCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 34556666665555543 34543 233 44444 46799999988888776 55444444000223467778999
Q ss_pred HH--H-HhcccC--C-CCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHH
Q 007864 369 AK--R-VKKFVE--K-DAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI-ARLWAA 440 (587)
Q Consensus 369 ~e--r-Fd~M~~--p-d~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty-L~aca~ 440 (587)
++ . |+++.+ | |...+..+ ..|.+.|+.++|++.+++.... .|+...+ ..++..
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-------------------dp~~~~~l~layL~ 179 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER-------------------DPTVQNYMTLSYLN 179 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-------------------CcchHHHHHHHHHH
Confidence 99 5 877753 3 45667778 9999999999999999999877 7776666 333333
Q ss_pred H--------HHHHHHHHhhCcc-HHHHHHHHHH--------HHHhcCC-CCChh--------------------------
Q 007864 441 R--------RDVINGVVSIGEY-VCVAEILVML--------LFLDGIK-RPDLV-------------------------- 476 (587)
Q Consensus 441 ~--------~~lh~~m~k~~pd-~~vynaLI~~--------~vFd~M~-~pdvv-------------------------- 476 (587)
. ...+..+.+..|+ .-.+.-++.. ...+.+. .||..
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccccc
Confidence 1 2233333334443 3333333322 1111111 11110
Q ss_pred ---hhHHHHHhHHh-------hcC-c----CHH----HHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHH-HHHHHHh
Q 007864 477 ---AWSSLLSVHEE-------WAS-R----RVV----LVISGFSLNGWYAEALGLFQTMRVDYIE-ANEFTI-DLCSACL 535 (587)
Q Consensus 477 ---TyNsLI~gy~k-------m~~-~----dvv----sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~-PD~~Ty-sLL~ac~ 535 (587)
-|..+=.++++ |+. | ... -.+-++.+.|++.++.+.|+.|...|.. |+- +- .+-++|.
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y-~~~a~adayl 338 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY-ARRWAASAYI 338 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH-HHHHHHHHHH
Confidence 11111112222 221 1 111 6677788888888888888888888854 554 45 8888888
Q ss_pred cCCCHHHHHHHHHHHHHc
Q 007864 536 AGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 536 ~~G~l~~A~~l~~~M~k~ 553 (587)
..+..++|..++..+...
T Consensus 339 ~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYS 356 (822)
T ss_pred hcCCcHHHHHHHHHHhhc
Confidence 888888888888888663
No 51
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=91.83 E-value=3.8 Score=50.88 Aligned_cols=190 Identities=8% Similarity=-0.026 Sum_probs=112.9
Q ss_pred CCCCCccchhhHHHHHHcCCCCC-CCCCCchhHHHHhhhcCCcHHH--H-Hhccc--CC-CCCcchhh-hhcccCCChhH
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSL-PNFKGMPICLVNEYGTSKNLAK--R-VKKFV--EK-DAKNWSGP-GSYPSTKSFHT 397 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd-~~tynipiaLI~~y~k~G~l~e--r-Fd~M~--~p-d~vtYNsL-~gy~r~G~~ee 397 (587)
..|+.++|.+.+.+.++.. |+ ...+. .+-..|.+.|+.++ . |++.. .| +...+-.+ ..+.+.|+.++
T Consensus 473 ~~g~~~eA~~~~~~Al~~~--P~~~~~~~---~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLALD--PGSVWLTY---RLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC--CCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHH
Confidence 4688888888888887653 33 33444 67788888899888 4 76653 23 44444455 55677888999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---H---------HHHHHH---HHHHHHHHhhCccHHHHHHHH
Q 007864 398 NRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---A---------RLWAAR---RDVINGVVSIGEYVCVAEILV 462 (587)
Q Consensus 398 Al~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L---------~aca~~---~~lh~~m~k~~pd~~vynaLI 462 (587)
|+..++.+... .. .++...+ + ..+... .+....+.....+...+..|-
T Consensus 548 Al~~l~~l~~~---~~--------------~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La 610 (1157)
T PRK11447 548 ALAHLNTLPRA---QW--------------NSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLA 610 (1157)
T ss_pred HHHHHHhCCch---hc--------------ChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHH
Confidence 98888877654 22 2332222 0 001000 111111111111222221121
Q ss_pred HH-----------HHHhcCC--CC-ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH-
Q 007864 463 ML-----------LFLDGIK--RP-DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT- 527 (587)
Q Consensus 463 ~~-----------~vFd~M~--~p-dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~T- 527 (587)
+. +.|++.. .| |...+..+ ...|...|+.++|++.|+.... ..||...
T Consensus 611 ~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~l---------------a~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~ 673 (1157)
T PRK11447 611 DWAQQRGDYAAARAAYQRVLTREPGNADARLGL---------------IEVDIAQGDLAAARAQLAKLPA--TANDSLNT 673 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH---------------HHHHHHCCCHHHHHHHHHHHhc--cCCCChHH
Confidence 11 2232222 22 44556666 8899999999999999997654 4565544
Q ss_pred H-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 528 I-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 528 y-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
+ .+-.++...|+.++|.++++.+++..
T Consensus 674 ~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 674 QRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 4 67777888999999999999988754
No 52
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=91.39 E-value=0.82 Score=36.10 Aligned_cols=62 Identities=19% Similarity=0.158 Sum_probs=48.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC-CHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 501 SLNGWYAEALGLFQTMRVDYIEA-NEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 501 ~k~G~~~eAl~Lf~eM~~~Gi~P-D~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
.+.|++++|+++|++.... .| |...+ .+..+|.+.|++++|.++++.+.+. .|+...|..|.
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 5789999999999999875 45 44555 9999999999999999999998876 35544444443
No 53
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=91.23 E-value=1.5 Score=40.29 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhc
Q 007864 505 WYAEALGLFQTMRVDYIEANEFTI-DLCSACLA 536 (587)
Q Consensus 505 ~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~ 536 (587)
++-+.+.+|++|...+++||..|| .++.++.+
T Consensus 84 kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 84 KLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 456788999999999999999999 99888764
No 54
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=90.62 E-value=0.64 Score=44.04 Aligned_cols=76 Identities=25% Similarity=0.375 Sum_probs=51.3
Q ss_pred ceeeEEecCCceeeeee------eeccchhhhhhccCchHHHHHHHHHHhcCCCCceEEeccccCC-CCCCCCccchhhH
Q 007864 265 MTIVALDVGKKYTGVAV------WHQGMEDIEAESTFFMEDMEEQMLNIKEKFEPVGFVVGFPVGS-PEKDTPKQFSQAH 337 (587)
Q Consensus 265 ~r~lAvD~G~kriGvAv------ia~aL~~~~r~s~k~~eal~~~~~m~~~G~~Pd~~Ty~sLL~a-c~~g~l~~A~~l~ 337 (587)
++.+|+|+|.+++|+|+ ++++++.+.+.+... ..+..+..+.....|+.++....++. ...+...+..+-|
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~~~A~pl~~i~~~~~~~--~~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~~~f 79 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILGSLASPLETIKRKNGKP--QDFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELARKF 79 (141)
T ss_pred ceEEEEecCCceEEEEEecCCCccccchhhheeccccH--hhHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHHHHH
Confidence 67899999999999999 799999998744432 23333333344468999999999877 3444433333334
Q ss_pred HHHHH
Q 007864 338 VKAFL 342 (587)
Q Consensus 338 ~~M~~ 342 (587)
.+.++
T Consensus 80 ~~~L~ 84 (141)
T COG0816 80 AERLK 84 (141)
T ss_pred HHHHH
Confidence 44444
No 55
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=90.16 E-value=0.35 Score=45.27 Aligned_cols=76 Identities=25% Similarity=0.385 Sum_probs=51.3
Q ss_pred ceeeEEecCCceeeeee------eeccchhhhhhccCchHHHHHHHHHHhcCCCCceEEeccccCC-CC-CCCCccchhh
Q 007864 265 MTIVALDVGKKYTGVAV------WHQGMEDIEAESTFFMEDMEEQMLNIKEKFEPVGFVVGFPVGS-PE-KDTPKQFSQA 336 (587)
Q Consensus 265 ~r~lAvD~G~kriGvAv------ia~aL~~~~r~s~k~~eal~~~~~m~~~G~~Pd~~Ty~sLL~a-c~-~g~l~~A~~l 336 (587)
|+.+|+|+|.+++|+|+ +++++..+.+.+. +.....+..+.....++.++....++. .. ....+.++++
T Consensus 1 mriL~lD~G~kriGiAvsd~~~~~a~pl~~i~~~~~---~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f 77 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPLGIIASPLETIPRRNR---EKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKF 77 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETTTSSEEEEEEEEECCC---CCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHH
T ss_pred CeEEEEEeCCCeEEEEEecCCCCeEeeeEEEECCCC---chHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHH
Confidence 68999999999999999 6889999975221 344444444455578999999999887 33 3334445554
Q ss_pred HHHHHHc
Q 007864 337 HVKAFLS 343 (587)
Q Consensus 337 ~~~M~~~ 343 (587)
-+++.+.
T Consensus 78 ~~~L~~~ 84 (135)
T PF03652_consen 78 AEELKKR 84 (135)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4555443
No 56
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=89.90 E-value=2.6 Score=37.61 Aligned_cols=64 Identities=8% Similarity=-0.045 Sum_probs=43.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAV 563 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vyn 563 (587)
-..|.+.|++++|...|++....+ ..+..++ .+-..+...|+.++|.+.+....+.. |+...+.
T Consensus 58 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 122 (135)
T TIGR02552 58 AACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESALKALDLAIEIC--GENPEYS 122 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--cccchHH
Confidence 666777788888888888765543 2234555 66667778888888888888777753 4444433
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=89.88 E-value=7.9 Score=41.68 Aligned_cols=108 Identities=10% Similarity=0.001 Sum_probs=66.6
Q ss_pred ccCchHHHHHHHHHHhcCCCCceEEeccccCC---C-CCCCCccchhhHHHHHHcCCCCCCCCCCchh----HHHHhhhc
Q 007864 293 STFFMEDMEEQMLNIKEKFEPVGFVVGFPVGS---P-EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPI----CLVNEYGT 364 (587)
Q Consensus 293 s~k~~eal~~~~~m~~~G~~Pd~~Ty~sLL~a---c-~~g~l~~A~~l~~~M~~~Gl~pd~~tynipi----aLI~~y~k 364 (587)
|..++.++..|..+.+ -|..||-+-+.- . +.|.++.|.++|.-+.++ ||. |++... .|=.=|.+
T Consensus 48 s~Q~dKAvdlF~e~l~----~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdl-T~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ----EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDL-TFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hcCcchHHHHHHHHHh----cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCC-chHHHHHHHHHHHHHHHH
Confidence 3456677777777754 244455443332 2 477888888888877654 332 222111 23344667
Q ss_pred CCcHHH--H-HhcccCCCCCcchhh----hhcccCCChhHHHHHHHHHhhc
Q 007864 365 SKNLAK--R-VKKFVEKDAKNWSGP----GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 365 ~G~l~e--r-Fd~M~~pd~vtYNsL----~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
+|-+|. . |..+.+-+...=+++ .-|-+..+|++|+++-.+....
T Consensus 120 aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~ 170 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL 170 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 777777 4 777776666667765 4566777788888877777766
No 58
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.18 E-value=3 Score=46.37 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=22.9
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCC
Q 007864 500 FSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDD 539 (587)
Q Consensus 500 y~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~ 539 (587)
+-+.|.+.+|+++|++..+. +.-|.... -|+.-|...|.
T Consensus 670 ~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 670 FRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 44566777777777665432 33444555 66666666653
No 59
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=89.18 E-value=7.7 Score=33.10 Aligned_cols=56 Identities=16% Similarity=0.161 Sum_probs=45.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEAN----EFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD----~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
-..|.+.|++++|.+.|++..... |+ ...+ .+-.++.+.|+.++|.+.+..+++..
T Consensus 46 ~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 46 GEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 667889999999999999987642 33 3445 77778888999999999999998874
No 60
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=89.14 E-value=1.4 Score=46.25 Aligned_cols=141 Identities=10% Similarity=0.032 Sum_probs=86.1
Q ss_pred HhhhcCCcHHH--H-HhcccCCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH-
Q 007864 360 NEYGTSKNLAK--R-VKKFVEKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI- 434 (587)
Q Consensus 360 ~~y~k~G~l~e--r-Fd~M~~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty- 434 (587)
..|...|++++ + .++- .+.-..... ..|.+.++++.|.+.++.|++. ..|..-.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-------------------~eD~~l~q 168 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI-------------------DEDSILTQ 168 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-------------------SCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------------CCcHHHHH
Confidence 34566777777 3 4432 222333334 7788888888888888888765 4455544
Q ss_pred -HHHHHHH----HHHHHHHHhhCccHHHHHHHHHHHHHhcCCC---CChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCH
Q 007864 435 -ARLWAAR----RDVINGVVSIGEYVCVAEILVMLLFLDGIKR---PDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWY 506 (587)
Q Consensus 435 -L~aca~~----~~lh~~m~k~~pd~~vynaLI~~~vFd~M~~---pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~ 506 (587)
..++.+. ..+.+. + .+|+++.+ ++..+.|.+ ..++...|++
T Consensus 169 La~awv~l~~g~e~~~~A-------------~---y~f~El~~~~~~t~~~lng~---------------A~~~l~~~~~ 217 (290)
T PF04733_consen 169 LAEAWVNLATGGEKYQDA-------------F---YIFEELSDKFGSTPKLLNGL---------------AVCHLQLGHY 217 (290)
T ss_dssp HHHHHHHHHHTTTCCCHH-------------H---HHHHHHHCCS--SHHHHHHH---------------HHHHHHCT-H
T ss_pred HHHHHHHHHhCchhHHHH-------------H---HHHHHHHhccCCCHHHHHHH---------------HHHHHHhCCH
Confidence 3444332 000000 0 45666543 466777888 8889999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCH-HHHHHHHHHHHHc
Q 007864 507 AEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDL-RKGGELHHKTLRT 553 (587)
Q Consensus 507 ~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l-~~A~~l~~~M~k~ 553 (587)
++|.+++.+-....- =|..|. .++-.....|+- +.+.+...++...
T Consensus 218 ~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 218 EEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999988654331 144566 788877888887 6677788887764
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.03 E-value=3.1 Score=44.79 Aligned_cols=65 Identities=11% Similarity=-0.093 Sum_probs=51.0
Q ss_pred HHHHhhhcCCcHHH--H-Hhcc-c-CCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCC
Q 007864 357 CLVNEYGTSKNLAK--R-VKKF-V-EKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPD 430 (587)
Q Consensus 357 aLI~~y~k~G~l~e--r-Fd~M-~-~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd 430 (587)
.|=.+|-+.|...+ + |..- . .|-+.||--| ..|.+-.+++.|+.+|.+-.+. .|-
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-------------------fP~ 288 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-------------------FPF 288 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-------------------CCc
Confidence 56677888888887 4 5542 2 3667788889 9999999999999999998877 899
Q ss_pred HHHHHHHHHH
Q 007864 431 DKFIARLWAA 440 (587)
Q Consensus 431 ~~TyL~aca~ 440 (587)
.+||+.+-++
T Consensus 289 ~VT~l~g~AR 298 (478)
T KOG1129|consen 289 DVTYLLGQAR 298 (478)
T ss_pred hhhhhhhhHH
Confidence 9999544443
No 62
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=88.82 E-value=3.9 Score=45.07 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=45.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HH-HHHHHHhcCCCHHHHHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEF-TI-DLCSACLAGDDLRKGGELHHKTL 551 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~-Ty-sLL~ac~~~G~l~~A~~l~~~M~ 551 (587)
..-|.+.++.+.|+++.+++.+ +.|+.+ +| .|..+|.+.|+++.|......+-
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 4558899999999999998887 578876 88 99999999999999988877664
No 63
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=88.57 E-value=1.9 Score=33.85 Aligned_cols=55 Identities=13% Similarity=0.075 Sum_probs=45.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEF-TI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~-Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
-..+.+.|++++|.+.|++..+.. |+.. .+ .+-..+...|++++|...++.+++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456889999999999999999875 7554 44 7788888999999999999998764
No 64
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=88.48 E-value=5.4 Score=37.11 Aligned_cols=63 Identities=6% Similarity=0.032 Sum_probs=46.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEA-NEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAV 563 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~P-D~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vyn 563 (587)
-..+.+.|++++|...|++.... .| |..++ .+-.++...|+.++|...+...++. .|+...+.
T Consensus 65 g~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~ 129 (144)
T PRK15359 65 AGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASWS 129 (144)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHH
Confidence 66678888999999999888763 45 44555 7777788889999999998888775 35444433
No 65
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=88.22 E-value=11 Score=36.95 Aligned_cols=159 Identities=11% Similarity=0.029 Sum_probs=95.9
Q ss_pred HHHHhhhcCCcHHH--H-HhcccC--CCC----Ccchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCC
Q 007864 357 CLVNEYGTSKNLAK--R-VKKFVE--KDA----KNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNY 426 (587)
Q Consensus 357 aLI~~y~k~G~l~e--r-Fd~M~~--pd~----vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~ 426 (587)
.+...|.+.|+.++ . |++... |+. ..|..+ ..|.+.|++++|+..|+++.+.
T Consensus 38 ~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~------------------ 99 (235)
T TIGR03302 38 EEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL------------------ 99 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH------------------
Confidence 56667788899998 5 776543 432 356778 9999999999999999999887
Q ss_pred CCCCHH----HH-HHHHHHH----------------HHHHHHHHhhCcc-HHHHHHHHHH-HHHhcCCCCChhhhHHHHH
Q 007864 427 KPPDDK----FI-ARLWAAR----------------RDVINGVVSIGEY-VCVAEILVML-LFLDGIKRPDLVAWSSLLS 483 (587)
Q Consensus 427 ~~Pd~~----Ty-L~aca~~----------------~~lh~~m~k~~pd-~~vynaLI~~-~vFd~M~~pdvvTyNsLI~ 483 (587)
.|+.. ++ ..+.+.. ......+.+..|+ ...+.++... ....... ...-.+
T Consensus 100 -~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~----~~~~~~-- 172 (235)
T TIGR03302 100 -HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLA----GKELYV-- 172 (235)
T ss_pred -CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHH----HHHHHH--
Confidence 44322 22 1111111 1111111111121 1112111111 0000000 000122
Q ss_pred hHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC-CHHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 484 VHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYI-EA-NEFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 484 gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi-~P-D~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
-..|.+.|++++|+..|++.....- .| ....+ .+..++.+.|+.++|..+++.+.+.
T Consensus 173 -------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 -------------ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -------------HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5568899999999999999876521 23 24567 9999999999999999998888764
No 66
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=87.96 E-value=0.91 Score=42.65 Aligned_cols=58 Identities=33% Similarity=0.487 Sum_probs=42.9
Q ss_pred cceeeEEecCCceeeeee------eeccchhhhhhccCchHHHHHHHHHHhcCCCCceEEeccccCC
Q 007864 264 YMTIVALDVGKKYTGVAV------WHQGMEDIEAESTFFMEDMEEQMLNIKEKFEPVGFVVGFPVGS 324 (587)
Q Consensus 264 ~~r~lAvD~G~kriGvAv------ia~aL~~~~r~s~k~~eal~~~~~m~~~G~~Pd~~Ty~sLL~a 324 (587)
-++++|+|+|.+++|+|+ +++++..+.+.+ .......+..+.....++.++....++.
T Consensus 3 ~~~iLalD~G~kriGvAv~d~~~~~a~pl~~i~~~~---~~~~~~~l~~~i~~~~i~~iVvGlP~~~ 66 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDPLGGTAQPLETIKRNN---GTPDWDRLEKLIKEWQPDGLVVGLPLNM 66 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecCCCCEEcCEEEEEcCC---CchHHHHHHHHHHHhCCCEEEEeccCCC
Confidence 467899999999999999 788998887522 1123444444555567899998888876
No 67
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=87.58 E-value=1.6 Score=48.59 Aligned_cols=80 Identities=16% Similarity=0.066 Sum_probs=66.9
Q ss_pred cchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHHHH
Q 007864 382 NWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEI 460 (587)
Q Consensus 382 tYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vyna 460 (587)
|..++ +.|.+.|..++++++++.=... |+ -
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~~~y---Gi--------------F-------------------------------- 135 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNRLQY---GI--------------F-------------------------------- 135 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhChhhc---cc--------------C--------------------------------
Confidence 33466 7888888888888888777777 77 2
Q ss_pred HHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcC
Q 007864 461 LVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAG 537 (587)
Q Consensus 461 LI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~ 537 (587)
||-.|+|.| |+.+.+.|++..|.++..+|...+...+..|+ .-+.+|.+.
T Consensus 136 ------------~D~~s~n~L---------------md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 136 ------------PDNFSFNLL---------------MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ------------CChhhHHHH---------------HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 566778888 99999999999999999999999999999999 777777776
No 68
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=87.30 E-value=6.3 Score=36.48 Aligned_cols=71 Identities=8% Similarity=-0.067 Sum_probs=59.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHH---------------hcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHH-cCCCCCH
Q 007864 497 ISGFSLNGWYAEALGLFQTMR---------------VDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLR-TGLHHTE 559 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~---------------~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k-~G~~pd~ 559 (587)
|-++++.|+++....+.+..- .....|+..+. +++.+++..|++..|.++.+...+ .++.-+.
T Consensus 9 i~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~ 88 (126)
T PF12921_consen 9 IYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPK 88 (126)
T ss_pred HHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCH
Confidence 999999999998888886542 12356899999 999999999999999999887765 6888889
Q ss_pred HHHHHHHH
Q 007864 560 MKAVALGL 567 (587)
Q Consensus 560 ~vynaLIa 567 (587)
.+|..|+.
T Consensus 89 ~~W~~Ll~ 96 (126)
T PF12921_consen 89 EFWRRLLE 96 (126)
T ss_pred HHHHHHHH
Confidence 99999984
No 69
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=86.90 E-value=15 Score=45.09 Aligned_cols=158 Identities=13% Similarity=0.025 Sum_probs=99.9
Q ss_pred HHHHhhhcCCcHHH--H-Hhccc--CCCCCcchhh-hhc--ccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCC
Q 007864 357 CLVNEYGTSKNLAK--R-VKKFV--EKDAKNWSGP-GSY--PSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKP 428 (587)
Q Consensus 357 aLI~~y~k~G~l~e--r-Fd~M~--~pd~vtYNsL-~gy--~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~ 428 (587)
.+-..+.. |+.++ . |.+-. .|+ .|+-+ .++ .+.|++++|...|+++... .
T Consensus 482 ~LG~~l~~-~~~~eAi~a~~~Al~~~Pd--~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-------------------~ 539 (987)
T PRK09782 482 RLAKCYRD-TLPGVALYAWLQAEQRQPD--AWQHRAVAYQAYQVEDYATALAAWQKISLH-------------------D 539 (987)
T ss_pred HHHHHHHh-CCcHHHHHHHHHHHHhCCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-------------------C
Confidence 44455555 66655 4 54433 355 34555 555 5899999999999998655 4
Q ss_pred CCHHHH--H-HHHHHH------HHHHHHHHhhCccH-HHHHHHHH-----H------HHHhcCC--CCChhhhHHHHHhH
Q 007864 429 PDDKFI--A-RLWAAR------RDVINGVVSIGEYV-CVAEILVM-----L------LFLDGIK--RPDLVAWSSLLSVH 485 (587)
Q Consensus 429 Pd~~Ty--L-~aca~~------~~lh~~m~k~~pd~-~vynaLI~-----~------~vFd~M~--~pdvvTyNsLI~gy 485 (587)
|+...+ + .++.+. ...+....+..|+. ..+..+.. + ..|++.. .|+...|..+
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~L---- 615 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVAR---- 615 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHH----
Confidence 444434 2 122222 22333333333322 22222211 0 3333332 4677778888
Q ss_pred HhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 486 EEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI--DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 486 ~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty--sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
-..+.+.|+.++|++.|++-.+ ..||...+ .+-.++...|+.++|.+.+...++.
T Consensus 616 -----------A~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 616 -----------ATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred -----------HHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8899999999999999998776 46887777 5556889999999999999999885
No 70
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=86.58 E-value=10 Score=37.38 Aligned_cols=31 Identities=13% Similarity=0.306 Sum_probs=21.2
Q ss_pred CCCCcchhh-hhcccCCChhHHHHHHHHHhhc
Q 007864 378 KDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 378 pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
.|...|..+ ..|...|++++|.+.|++-.+.
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l 102 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQL 102 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 355667777 7777777777777777766554
No 71
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=86.43 E-value=3.7 Score=37.65 Aligned_cols=65 Identities=18% Similarity=0.056 Sum_probs=49.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHH-----HcCCCCCHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTL-----RTGLHHTEMKA 562 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~-----k~G~~pd~~vy 562 (587)
+..+...|++++|.++.+.+....- -|...| .+|.++...|+..+|.+.++.+. +.|+.|+..+-
T Consensus 69 ~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 69 AEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 8889999999999999999887532 267788 99999999999999999988774 46999988764
No 72
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=86.38 E-value=3 Score=34.69 Aligned_cols=50 Identities=18% Similarity=0.138 Sum_probs=36.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH-H-HHHHHHhcCCCHHHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFT-I-DLCSACLAGDDLRKGGELHHK 549 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~T-y-sLL~ac~~~G~l~~A~~l~~~ 549 (587)
-..|.+.|++++|+++++. ....|+... . .+-.+|.+.|+.++|.+.++.
T Consensus 32 a~~~~~~~~y~~A~~~~~~---~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELLQK---LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHTTHHHHHHHHHHC---HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 7788999999999999988 333344433 3 556778889999999988765
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=85.31 E-value=9.1 Score=43.58 Aligned_cols=166 Identities=10% Similarity=-0.047 Sum_probs=100.4
Q ss_pred CCccchhhHHHHHHcCCCCCCC-CCCchhHHHHhhh---------cCCcHHH--H-Hhccc---CCCCCcchhh-hhccc
Q 007864 329 TPKQFSQAHVKAFLSKLDSLPN-FKGMPICLVNEYG---------TSKNLAK--R-VKKFV---EKDAKNWSGP-GSYPS 391 (587)
Q Consensus 329 ~l~~A~~l~~~M~~~Gl~pd~~-tynipiaLI~~y~---------k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r 391 (587)
..++|.+++.+.++. .|+.. .|. .|-.+|. ..++.++ . +++.. ..|...|..+ ..+..
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~---~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYC---ALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHH---HHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 355777777777643 34432 222 2322222 2233455 4 55543 2466788889 99999
Q ss_pred CCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH--HHHH--HHH---HHHHHHHHhhCccHHHHHHHHHH
Q 007864 392 TKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI--ARLW--AAR---RDVINGVVSIGEYVCVAEILVML 464 (587)
Q Consensus 392 ~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty--L~ac--a~~---~~lh~~m~k~~pd~~vynaLI~~ 464 (587)
.|++++|...|++..+. .||.... ..+. ... .+-.
T Consensus 351 ~g~~~~A~~~~~~Al~l-------------------~P~~~~a~~~lg~~l~~~G~~~eAi------------------- 392 (553)
T PRK12370 351 HSEYIVGSLLFKQANLL-------------------SPISADIKYYYGWNLFMAGQLEEAL------------------- 392 (553)
T ss_pred ccCHHHHHHHHHHHHHh-------------------CCCCHHHHHHHHHHHHHCCCHHHHH-------------------
Confidence 99999999999999877 6765443 1111 111 1111
Q ss_pred HHHhcCC--CCCh-hhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH-H-HHHHHHhcCCC
Q 007864 465 LFLDGIK--RPDL-VAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-I-DLCSACLAGDD 539 (587)
Q Consensus 465 ~vFd~M~--~pdv-vTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~T-y-sLL~ac~~~G~ 539 (587)
..+++.. .|+- ..+..+ ...+...|++++|.+.+++..... .|+... + .+-.++...|+
T Consensus 393 ~~~~~Al~l~P~~~~~~~~~---------------~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~ 456 (553)
T PRK12370 393 QTINECLKLDPTRAAAGITK---------------LWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGK 456 (553)
T ss_pred HHHHHHHhcCCCChhhHHHH---------------HHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCC
Confidence 2222221 2332 223334 445777899999999999977543 355444 4 55566778999
Q ss_pred HHHHHHHHHHHHHc
Q 007864 540 LRKGGELHHKTLRT 553 (587)
Q Consensus 540 l~~A~~l~~~M~k~ 553 (587)
.++|.+.+..+...
T Consensus 457 ~~eA~~~~~~~~~~ 470 (553)
T PRK12370 457 HELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999887554
No 74
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=83.40 E-value=3.4 Score=33.56 Aligned_cols=56 Identities=20% Similarity=0.145 Sum_probs=43.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc----C-CCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVD----Y-IEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~----G-i~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
=..|...|++++|++.|++-... | -.|+ ..++ .+-..+...|+.++|.+.+++..+
T Consensus 12 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 12 ARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 78899999999999999987643 2 1234 4466 888889999999999999988754
No 75
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=82.89 E-value=18 Score=38.28 Aligned_cols=134 Identities=12% Similarity=0.050 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCCC--
Q 007864 395 FHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKR-- 472 (587)
Q Consensus 395 ~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~~-- 472 (587)
+++.+++++.|.+. |+ +-+..+|+.|+.=.. ...+-..+.....+. .+|+.|++
T Consensus 78 ~~~~~~~y~~L~~~---gF--------------k~~~y~~laA~~i~~----~~~~~~~~~~~~ra~---~iy~~mKk~H 133 (297)
T PF13170_consen 78 FKEVLDIYEKLKEA---GF--------------KRSEYLYLAALIILE----EEEKEDYDEIIQRAK---EIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHHh---cc--------------CccChHHHHHHHHHH----hcccccHHHHHHHHH---HHHHHHHHhC
Confidence 45667889999999 99 888888855443210 000011122222222 67777763
Q ss_pred -----CChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCC----HHHHHHHHHHHHhcCCCCCHHH-H-HHHHHHhcCCC--
Q 007864 473 -----PDLVAWSSLLSVHEEWASRRVVLVISGFSLNGW----YAEALGLFQTMRVDYIEANEFT-I-DLCSACLAGDD-- 539 (587)
Q Consensus 473 -----pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~----~~eAl~Lf~eM~~~Gi~PD~~T-y-sLL~ac~~~G~-- 539 (587)
++-+.+.+| +.+ ...+ .+++...|+.+...|+..+... + +-+-+++....
T Consensus 134 ~fLTs~~D~~~a~l---------------LA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 134 PFLTSPEDYPFAAL---------------LAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred ccccCccchhHHHH---------------Hhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 456666666 444 2222 3567778888888787765553 3 55555554433
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007864 540 -LRKGGELHHKTLRTGLHHTEMKAVALGLIS 569 (587)
Q Consensus 540 -l~~A~~l~~~M~k~G~~pd~~vynaLIal~ 569 (587)
+.++.++++.+.+.|++.-...|.+|+.+.
T Consensus 197 ~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 197 KVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 335677788888888888777787776443
No 76
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=81.60 E-value=54 Score=36.14 Aligned_cols=218 Identities=9% Similarity=0.084 Sum_probs=131.1
Q ss_pred EeccccCC--C-CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH-----H-HhcccCCCCCcchhh-
Q 007864 317 VVGFPVGS--P-EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK-----R-VKKFVEKDAKNWSGP- 386 (587)
Q Consensus 317 Ty~sLL~a--c-~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e-----r-Fd~M~~pd~vtYNsL- 386 (587)
+.+.++.+ + ..|+.+.+-+...+..+.-=.++..++= +.-......|+... . ..+|...+...-...
T Consensus 118 ~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~l---trarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~ 194 (400)
T COG3071 118 VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVEL---TRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLAL 194 (400)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHH---HHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHH
Confidence 33444444 3 5889999988888887652233333222 56666677787766 2 556777888888999
Q ss_pred hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHH--H-HHHHHHH-------------HHHHHHHHh
Q 007864 387 GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKF--I-ARLWAAR-------------RDVINGVVS 450 (587)
Q Consensus 387 ~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~T--y-L~aca~~-------------~~lh~~m~k 450 (587)
..|.+.|.+.+...+...|.+. |+ --|+.. + -.+|-.. +..+...-+
T Consensus 195 r~y~~~g~~~~ll~~l~~L~ka---~~--------------l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr 257 (400)
T COG3071 195 RAYIRLGAWQALLAILPKLRKA---GL--------------LSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPR 257 (400)
T ss_pred HHHHHhccHHHHHHHHHHHHHc---cC--------------CChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccH
Confidence 9999999999999999999999 87 333322 1 3333211 112222211
Q ss_pred -hCccHHHHHHHH----HH--------HHHhcCC---CCChhh---------hHHHHHhHHhh----c-CcCHH-HHHHH
Q 007864 451 -IGEYVCVAEILV----ML--------LFLDGIK---RPDLVA---------WSSLLSVHEEW----A-SRRVV-LVISG 499 (587)
Q Consensus 451 -~~pd~~vynaLI----~~--------~vFd~M~---~pdvvT---------yNsLI~gy~km----~-~~dvv-sLI~g 499 (587)
.+.|..+-.+++ +. -+.+..+ +++..+ +..+|..--++ | +|++. +|=.-
T Consensus 258 ~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L 337 (400)
T COG3071 258 KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRL 337 (400)
T ss_pred HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 222222111111 11 1111111 111110 01111111111 1 23333 55667
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 007864 500 FSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLH 556 (587)
Q Consensus 500 y~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~ 556 (587)
|.+++.+.+|.+.|+ ..-...|+..+| -+-.++.+.|+..+|.+...+....-..
T Consensus 338 ~~k~~~w~kA~~~le--aAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 338 ALKNKLWGKASEALE--AALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred HHHhhHHHHHHHHHH--HHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 889999999999999 555678999999 9999999999999999998877643333
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=81.29 E-value=12 Score=38.87 Aligned_cols=78 Identities=8% Similarity=-0.190 Sum_probs=44.1
Q ss_pred CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhc----CCcHHH--H-HhcccC--CCC-Ccchhh-hhcccCCC
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGT----SKNLAK--R-VKKFVE--KDA-KNWSGP-GSYPSTKS 394 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k----~G~l~e--r-Fd~M~~--pd~-vtYNsL-~gy~r~G~ 394 (587)
..|+.++|..++.+.++.. +.|...++ . ...+.. .|..+. + ++.... |+. ..+..+ ..+...|+
T Consensus 55 ~~g~~~~A~~~~~~~l~~~-P~~~~a~~---~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 55 IAGDLPKALALLEQLLDDY-PRDLLALK---L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HcCCHHHHHHHHHHHHHHC-CCcHHHHH---H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC
Confidence 4788888988888887652 22222222 1 112222 333333 3 433211 222 233344 67888999
Q ss_pred hhHHHHHHHHHhhc
Q 007864 395 FHTNRLQAKRQLRR 408 (587)
Q Consensus 395 ~eeAl~Lf~eM~~~ 408 (587)
+++|.+.+++..+.
T Consensus 130 ~~~A~~~~~~al~~ 143 (355)
T cd05804 130 YDRAEEAARRALEL 143 (355)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988876
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=80.79 E-value=44 Score=34.82 Aligned_cols=66 Identities=18% Similarity=0.112 Sum_probs=40.5
Q ss_pred hcCCHHHHHHHHHHHHhcC-----CCC-CHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007864 502 LNGWYAEALGLFQTMRVDY-----IEA-NEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALGLI 568 (587)
Q Consensus 502 k~G~~~eAl~Lf~eM~~~G-----i~P-D~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLIal 568 (587)
..|+.+++ +.|..+.+.. +.| ....| .+-..+.+.|+.++|...++..++....-.+..--+++.+
T Consensus 208 ~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 208 YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLEL 280 (296)
T ss_pred HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 35555554 3555555321 111 22467 8888889999999999999999987643333333445543
No 79
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=80.60 E-value=5.5 Score=31.29 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=26.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLC 531 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL 531 (587)
...|.+.|++++|.++++++... .||...| .++
T Consensus 32 a~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 32 AQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 88899999999999999998875 5776666 554
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=79.73 E-value=63 Score=36.99 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=33.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 498 SGFSLNGWYAEALGLFQTMRVDYIEANEFTI--DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 498 ~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty--sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
.-|-..|++++|+++.++-.+. .|+.+-+ .--+.+-+.|++++|.+..+...+..
T Consensus 202 qhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD 258 (517)
T PF12569_consen 202 QHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD 258 (517)
T ss_pred HHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 3455677777777777765543 4554433 44555666777777777666665543
No 81
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=79.73 E-value=10 Score=29.90 Aligned_cols=55 Identities=22% Similarity=0.174 Sum_probs=44.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HH-HHHHHHhcCC-CHHHHHHHHHHHHHc
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEF-TI-DLCSACLAGD-DLRKGGELHHKTLRT 553 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~-Ty-sLL~ac~~~G-~l~~A~~l~~~M~k~ 553 (587)
=..+.+.|++++|+..|++-.+. .|+.. .| .+-.++.+.| +.++|.+.+...++.
T Consensus 10 g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 10 GQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 67789999999999999998774 46554 44 7777788889 799999999887753
No 82
>PRK11189 lipoprotein NlpI; Provisional
Probab=78.63 E-value=20 Score=37.37 Aligned_cols=120 Identities=13% Similarity=0.004 Sum_probs=76.2
Q ss_pred Ccchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHH-H--HHHHHHH-HHHHHHHHhhCccH
Q 007864 381 KNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKF-I--ARLWAAR-RDVINGVVSIGEYV 455 (587)
Q Consensus 381 vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~T-y--L~aca~~-~~lh~~m~k~~pd~ 455 (587)
..|..+ ..|.+.|+.++|...|++..+. .|+... | +...... .+.....
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l-------------------~P~~~~a~~~lg~~~~~~g~~~~A~------- 118 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALAL-------------------RPDMADAYNYLGIYLTQAGNFDAAY------- 118 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------------------CCCCHHHHHHHHHHHHHCCCHHHHH-------
Confidence 458888 8899999999999999998876 665433 3 2111111 0000000
Q ss_pred HHHHHHHHHHHHhcCC--CC-ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHH
Q 007864 456 CVAEILVMLLFLDGIK--RP-DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLC 531 (587)
Q Consensus 456 ~vynaLI~~~vFd~M~--~p-dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL 531 (587)
..|+... .| +..+|.-+ -..|...|++++|++.|+.-.+. .|+.... ...
T Consensus 119 ---------~~~~~Al~l~P~~~~a~~~l---------------g~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~ 172 (296)
T PRK11189 119 ---------EAFDSVLELDPTYNYAYLNR---------------GIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWL 172 (296)
T ss_pred ---------HHHHHHHHhCCCCHHHHHHH---------------HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 1222221 23 45677777 77888999999999999987763 5655322 222
Q ss_pred HHHhcCCCHHHHHHHHHHHHH
Q 007864 532 SACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 532 ~ac~~~G~l~~A~~l~~~M~k 552 (587)
..+...++.++|.+.+.....
T Consensus 173 ~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 173 YLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHccCCHHHHHHHHHHHHh
Confidence 223456789999999976553
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=78.53 E-value=46 Score=34.61 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=41.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC-------CCHHHHHHHHH--HhcCCCHHHHHHHHHHHHHcC
Q 007864 496 VISGFSLNGWYAEALGLFQTMRVDYIE-------ANEFTIDLCSA--CLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 496 LI~gy~k~G~~~eAl~Lf~eM~~~Gi~-------PD~~TysLL~a--c~~~G~l~~A~~l~~~M~k~G 554 (587)
...++...|+.++|.++++.+....-. ...+...++.+ +...|+.++|.+.+......+
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 270 AALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 377888999999999999999864322 11122234444 447899999999988776543
No 84
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=78.40 E-value=11 Score=40.12 Aligned_cols=79 Identities=15% Similarity=0.097 Sum_probs=51.9
Q ss_pred CCChhhhHHHHHhHHh--hcCcCHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCC-HHHHHHH
Q 007864 472 RPDLVAWSSLLSVHEE--WASRRVV-LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDD-LRKGGEL 546 (587)
Q Consensus 472 ~pdvvTyNsLI~gy~k--m~~~dvv-sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~-l~~A~~l 546 (587)
++|+.+|+.||+.+=| +--.|+. .+.--|-+. -+-+.+++++|...|+.||..+= .|++++++.+- +.+...+
T Consensus 104 erDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm 181 (406)
T KOG3941|consen 104 ERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRM 181 (406)
T ss_pred hhhHHHHHHHHHhCcccccccHHHHHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHH
Confidence 5666666666555533 2223333 223334332 34588999999999999999999 99999998876 4455555
Q ss_pred HHHHHH
Q 007864 547 HHKTLR 552 (587)
Q Consensus 547 ~~~M~k 552 (587)
.-.|-+
T Consensus 182 ~yWmPk 187 (406)
T KOG3941|consen 182 LYWMPK 187 (406)
T ss_pred HHhhhh
Confidence 555544
No 85
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=78.25 E-value=21 Score=37.08 Aligned_cols=116 Identities=15% Similarity=0.157 Sum_probs=84.5
Q ss_pred HHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCC
Q 007864 357 CLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPP 429 (587)
Q Consensus 357 aLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~P 429 (587)
++.....+.|++.+ . |.+.. .+|.-.||.+ -+|.+.|+.++|..-|.+-.+- .|
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L-------------------~~ 165 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL-------------------AP 165 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh-------------------cc
Confidence 45666677788888 4 65543 4688899999 9999999999999888777665 44
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHH
Q 007864 430 DDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEA 509 (587)
Q Consensus 430 d~~TyL~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eA 509 (587)
+.-++ .|-| --.|.-.|+.+.|
T Consensus 166 ~~p~~-------------------------------------------~nNl---------------gms~~L~gd~~~A 187 (257)
T COG5010 166 NEPSI-------------------------------------------ANNL---------------GMSLLLRGDLEDA 187 (257)
T ss_pred CCchh-------------------------------------------hhhH---------------HHHHHHcCCHHHH
Confidence 43222 3333 4456678999999
Q ss_pred HHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHH
Q 007864 510 LGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKT 550 (587)
Q Consensus 510 l~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M 550 (587)
..++..-...+-. |...- .+.-.....|++++|+.+-..-
T Consensus 188 ~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 188 ETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 9999988776533 44444 8888888999999998876544
No 86
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=77.88 E-value=13 Score=34.33 Aligned_cols=53 Identities=17% Similarity=0.071 Sum_probs=44.2
Q ss_pred CCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHH-HHHHHHhcCCC
Q 007864 472 RPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVD-YIEANEFTI-DLCSACLAGDD 539 (587)
Q Consensus 472 ~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~-Gi~PD~~Ty-sLL~ac~~~G~ 539 (587)
.|+..+-.++ +.+|+.+|++..|+++.+...+. ++.-+..+| .|+.-+-..-+
T Consensus 49 ~Pt~~lL~AI---------------v~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 49 YPTSRLLIAI---------------VHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCHHHHHHH---------------HHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 3677777788 99999999999999999997665 788888999 99988765544
No 87
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=77.74 E-value=1.1e+02 Score=33.39 Aligned_cols=78 Identities=9% Similarity=0.107 Sum_probs=59.4
Q ss_pred CCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhc-ccCCCCC------cchhh-hhcccCCCh
Q 007864 327 KDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKK-FVEKDAK------NWSGP-GSYPSTKSF 395 (587)
Q Consensus 327 ~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~-M~~pd~v------tYNsL-~gy~r~G~~ 395 (587)
....+.|..+|-+|.+ -|..++..-++|=+.|-+.|.+|. + -.. |..||.- .---| .-|...|.+
T Consensus 48 s~Q~dKAvdlF~e~l~----~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQ----EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHh----cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 4578899999999987 355666655688899999999999 6 433 3455531 22346 778899999
Q ss_pred hHHHHHHHHHhhc
Q 007864 396 HTNRLQAKRQLRR 408 (587)
Q Consensus 396 eeAl~Lf~eM~~~ 408 (587)
|.|.++|....+.
T Consensus 124 DRAE~~f~~L~de 136 (389)
T COG2956 124 DRAEDIFNQLVDE 136 (389)
T ss_pred hHHHHHHHHHhcc
Confidence 9999999998875
No 88
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=77.71 E-value=9 Score=30.48 Aligned_cols=55 Identities=11% Similarity=0.062 Sum_probs=45.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 498 SGFSLNGWYAEALGLFQTMRVDYIEANEFTI--DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 498 ~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty--sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
..|.+.+++++|++.++++... .|+.... ..-..+.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 5688999999999999999885 4555444 66777889999999999999998764
No 89
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=77.60 E-value=19 Score=27.55 Aligned_cols=57 Identities=18% Similarity=0.081 Sum_probs=46.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHH-HHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANE-FTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~-~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~ 555 (587)
...+.+.|++++|.++|++..+. .|+. ..+ .+...+...|+.++|.+.+....+..-
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 65 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP 65 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 67788899999999999998765 3433 556 788888888999999999999888653
No 90
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=76.62 E-value=40 Score=39.98 Aligned_cols=136 Identities=10% Similarity=0.009 Sum_probs=92.0
Q ss_pred CCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH----HHHHHHHHHHHHHHHhhCc
Q 007864 379 DAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI----ARLWAARRDVINGVVSIGE 453 (587)
Q Consensus 379 d~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty----L~aca~~~~lh~~m~k~~p 453 (587)
++-.+--| ....+.|+.++|+.+++...+. .||..-. ...+.+.+.+.+.+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-------------------~Pd~~~a~~~~a~~L~~~~~~eeA~~---- 141 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR-------------------FPDSSEAFILMLRGVKRQQGIEAGRA---- 141 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-------------------CCCcHHHHHHHHHHHHHhccHHHHHH----
Confidence 45666667 8888999999999999999877 8998877 222222221211111
Q ss_pred cHHHHHHHHHHHHHhcCCCCC-hhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HH
Q 007864 454 YVCVAEILVMLLFLDGIKRPD-LVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DL 530 (587)
Q Consensus 454 d~~vynaLI~~~vFd~M~~pd-vvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sL 530 (587)
.+. +.++ ..|| ....+.+ =.++.+.|++++|.++|++.... .|| ..++ +.
T Consensus 142 ---~~~-----~~l~--~~p~~~~~~~~~---------------a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~ 194 (694)
T PRK15179 142 ---EIE-----LYFS--GGSSSAREILLE---------------AKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGW 194 (694)
T ss_pred ---HHH-----HHhh--cCCCCHHHHHHH---------------HHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence 011 1111 1232 3344555 66789999999999999999883 344 6778 88
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007864 531 CSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565 (587)
Q Consensus 531 L~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaL 565 (587)
-.++-+.|+.++|...|...++. ..+....||-+
T Consensus 195 a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 195 AQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 99999999999999999988763 23334555444
No 91
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.70 E-value=11 Score=43.71 Aligned_cols=208 Identities=10% Similarity=-0.028 Sum_probs=113.6
Q ss_pred EEeccccCCC-CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H--Hhccc-CCCCCcchhh--h
Q 007864 316 FVVGFPVGSP-EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R--VKKFV-EKDAKNWSGP--G 387 (587)
Q Consensus 316 ~Ty~sLL~ac-~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r--Fd~M~-~pd~vtYNsL--~ 387 (587)
.+|+.+-+.. ..|++++|..++..+++..- -.+-.|. .|-.+|...|+.+. . |+.+. .|+.+...+- .
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p-~fida~i---nla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKP-KFIDAYI---NLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCc-hhhHHHh---hHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhH
Confidence 3566666663 47888888888888876431 1234455 67777778888777 4 44443 4665554444 3
Q ss_pred hcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHH-HH--HHHHHHH-----HHHHH--HHHhhCccHHH
Q 007864 388 SYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDK-FI--ARLWAAR-----RDVIN--GVVSIGEYVCV 457 (587)
Q Consensus 388 gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~-Ty--L~aca~~-----~~lh~--~m~k~~pd~~v 457 (587)
-.-..|+++||...|.+-.+. .|.-. .| |.+.-+. ..+|. ..+++.|+-
T Consensus 193 Llka~Grl~ea~~cYlkAi~~-------------------qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f-- 251 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIET-------------------QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF-- 251 (966)
T ss_pred HHHhhcccchhHHHHHHHHhh-------------------CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc--
Confidence 333458888888887766554 33211 11 2222222 22222 222244432
Q ss_pred HHHHHHH-HHHhcCCCCChhhhHHHHHhHHhh--cCc--CHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHH-
Q 007864 458 AEILVML-LFLDGIKRPDLVAWSSLLSVHEEW--ASR--RVV--LVISGFSLNGWYAEALGLFQTMRVDYIEANE-FTI- 528 (587)
Q Consensus 458 ynaLI~~-~vFd~M~~pdvvTyNsLI~gy~km--~~~--dvv--sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~-~Ty- 528 (587)
--+-|+. .++.+|..+| --|++|-|. -.| .++ .|-.-|-..|.++-|...|++-.+ ..|+- ..|
T Consensus 252 ~dAYiNLGnV~ke~~~~d-----~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~ 324 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFD-----RAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYN 324 (966)
T ss_pred hHHHhhHHHHHHHHhcch-----HHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHh
Confidence 2233333 5555555433 224555541 111 111 334456677777777777776554 34553 456
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 007864 529 DLCSACLAGDDLRKGGELHHKTLRTGL 555 (587)
Q Consensus 529 sLL~ac~~~G~l~~A~~l~~~M~k~G~ 555 (587)
.|-+|+-..|++.+|...+....+..-
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 777777777777777777776666543
No 92
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=75.59 E-value=19 Score=40.45 Aligned_cols=131 Identities=11% Similarity=0.142 Sum_probs=76.4
Q ss_pred hhcCCcHHH--H-Hhccc--CCCCCcchhh--hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH
Q 007864 362 YGTSKNLAK--R-VKKFV--EKDAKNWSGP--GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI 434 (587)
Q Consensus 362 y~k~G~l~e--r-Fd~M~--~pd~vtYNsL--~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty 434 (587)
+-..|..++ . ++.+. .||-+.|..+ .-+.+.++.++|.+.++.+... .|+....
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-------------------~P~~~~l 376 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-------------------DPNSPLL 376 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------------------CCCccHH
Confidence 345677777 4 77664 4766666666 8889999999999999999887 7775322
Q ss_pred ----HHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCC--C-CChhhhHHHHHhHHhhcCcCHH--HHHHHHHhcCC
Q 007864 435 ----ARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIK--R-PDLVAWSSLLSVHEEWASRRVV--LVISGFSLNGW 505 (587)
Q Consensus 435 ----L~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~--~-pdvvTyNsLI~gy~km~~~dvv--sLI~gy~k~G~ 505 (587)
-.++-+....-+.+ +++++-. . -|...|..|-.+|++.+...=. +--.+|...|+
T Consensus 377 ~~~~a~all~~g~~~eai----------------~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 377 QLNLAQALLKGGKPQEAI----------------RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGR 440 (484)
T ss_pred HHHHHHHHHhcCChHHHH----------------HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence 11111110000000 2222221 2 2677899996666666654433 55666677777
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHH
Q 007864 506 YAEALGLFQTMRVDYIEANEFTI 528 (587)
Q Consensus 506 ~~eAl~Lf~eM~~~Gi~PD~~Ty 528 (587)
+++|...+..-.+. +++|..+|
T Consensus 441 ~~~A~~~l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 441 LEQAIIFLMRASQQ-VKLGFPDW 462 (484)
T ss_pred HHHHHHHHHHHHHh-ccCCcHHH
Confidence 77777666554433 33444444
No 93
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=75.44 E-value=4.1 Score=37.86 Aligned_cols=71 Identities=24% Similarity=0.276 Sum_probs=48.2
Q ss_pred eEEecCCceeeeee------eeccchhhhhhccCchHHHHHHHHHHhcCCCCceEEeccccCC-CC-CCCCccchhhHHH
Q 007864 268 VALDVGKKYTGVAV------WHQGMEDIEAESTFFMEDMEEQMLNIKEKFEPVGFVVGFPVGS-PE-KDTPKQFSQAHVK 339 (587)
Q Consensus 268 lAvD~G~kriGvAv------ia~aL~~~~r~s~k~~eal~~~~~m~~~G~~Pd~~Ty~sLL~a-c~-~g~l~~A~~l~~~ 339 (587)
+|+|+|.+++|+|+ ++++++.+.+. ........+..+.....|+.++....++. .. ......++.+-++
T Consensus 1 laiD~G~kriGvA~~d~~~~~a~pl~~i~~~---~~~~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~~f~~~ 77 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDITGWTAQGIPTIKAQ---DGEPDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQKFANR 77 (130)
T ss_pred CeEccCCCeEEEEEECCCCCEEeceEEEEec---CCcHHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHHHHHHH
Confidence 58999999999998 68888888641 22344556666666778999999988886 22 3333444454444
Q ss_pred HH
Q 007864 340 AF 341 (587)
Q Consensus 340 M~ 341 (587)
+.
T Consensus 78 L~ 79 (130)
T TIGR00250 78 LE 79 (130)
T ss_pred HH
Confidence 43
No 94
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=75.26 E-value=12 Score=38.83 Aligned_cols=55 Identities=11% Similarity=-0.043 Sum_probs=42.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHH----HH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEF----TI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~----Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
|+-+.+.|+.+.|..+|++-... .|... .| ..+.-=.+.|+++....+...+.+.
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888899999999999987765 34444 77 8888878889999999999888774
No 95
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=75.20 E-value=1e+02 Score=37.22 Aligned_cols=59 Identities=20% Similarity=0.178 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 495 sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
-+-.+|.+.|++.+|+.+|......-..-+...| -+-..+-..|..++|.+.+...+..
T Consensus 419 d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 419 DLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 7889999999999999999999987666677888 8888888999999999999999874
No 96
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=73.43 E-value=31 Score=37.18 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=30.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
-.+|.+.|++++|+..+++.... .|+ ...| .+-.+|...|++++|...++..++.
T Consensus 43 a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 43 AQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 44455566666666666665543 332 3334 5555566666666666666666553
No 97
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=72.69 E-value=29 Score=33.20 Aligned_cols=76 Identities=13% Similarity=0.142 Sum_probs=54.1
Q ss_pred HHHHhHHhhcCcCHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 007864 480 SLLSVHEEWASRRVV--LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLH 556 (587)
Q Consensus 480 sLI~gy~km~~~dvv--sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~ 556 (587)
.+|.+|++++.-+-. .-++.+.+.|+-+.--+++.++.. .-+++..-. -+-+||.+.|+..++.+++.+.-++|+.
T Consensus 74 rVi~C~~~~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 74 RVIECYAKRNKLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHTT---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 456667776644333 568899999999998999998765 335677777 9999999999999999999999999974
No 98
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=71.73 E-value=18 Score=41.31 Aligned_cols=136 Identities=14% Similarity=0.062 Sum_probs=83.9
Q ss_pred h-hhcccCCChhHHHHHHHHHhhc--ccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHH
Q 007864 386 P-GSYPSTKSFHTNRLQAKRQLRR--FISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEILV 462 (587)
Q Consensus 386 L-~gy~r~G~~eeAl~Lf~eM~~~--~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vynaLI 462 (587)
+ ..|...|++++|..+++.-.+. .-.|. ..|+..+.++.++.. +..+.++..-+.+|+-.+
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~-------------~hl~va~~l~~~a~~---y~~~~k~~eAv~ly~~AL 268 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGL-------------KHLVVASMLNILALV---YRSLGKYDEAVNLYEEAL 268 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCc-------------cCHHHHHHHHHHHHH---HHHhccHHHHHHHHHHHH
Confidence 8 9999999999999999875542 00022 134444434433322 222111222333444444
Q ss_pred HH--HHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHh---c--C-CCCCHHHH--HHHH
Q 007864 463 ML--LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRV---D--Y-IEANEFTI--DLCS 532 (587)
Q Consensus 463 ~~--~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~---~--G-i~PD~~Ty--sLL~ 532 (587)
+. .+|.++-..-..+++.| =..|++.|+++||...+++-.+ . | -.|+..+. .+..
T Consensus 269 ~i~e~~~G~~h~~va~~l~nL---------------a~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 269 TIREEVFGEDHPAVAATLNNL---------------AVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA 333 (508)
T ss_pred HHHHHhcCCCCHHHHHHHHHH---------------HHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 33 34444433345567777 7789999999998888876432 2 2 34555666 6777
Q ss_pred HHhcCCCHHHHHHHHHHHHH
Q 007864 533 ACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 533 ac~~~G~l~~A~~l~~~M~k 552 (587)
.|+..+++++|..++....+
T Consensus 334 ~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 334 ILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred HHHHhcchhHHHHHHHHHHH
Confidence 78999999999999886654
No 99
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=70.40 E-value=35 Score=39.68 Aligned_cols=130 Identities=12% Similarity=0.044 Sum_probs=80.8
Q ss_pred ChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHH----------HHHHHHHHh----hCccHHHH
Q 007864 394 SFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI-ARLWAAR----------RDVINGVVS----IGEYVCVA 458 (587)
Q Consensus 394 ~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty-L~aca~~----------~~lh~~m~k----~~pd~~vy 458 (587)
+..+|+.+|....+. .+|.. | +.-.++. +.+++.+.+ ...+..+|
T Consensus 334 ~~~~A~~~~~klp~h-------------------~~nt~-wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiy 393 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-------------------HYNTG-WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIY 393 (638)
T ss_pred HHHHHHHHHHhhHHh-------------------cCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHH
Confidence 357899999986665 56666 5 3333333 667776666 34466677
Q ss_pred HHHHHH------------HHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CH
Q 007864 459 EILVML------------LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEA-NE 525 (587)
Q Consensus 459 naLI~~------------~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~P-D~ 525 (587)
++.+-- .+.+.++. .-.||.++ =+.|...++.+.|++.|++-.+ +.| ..
T Consensus 394 ST~LWHLq~~v~Ls~Laq~Li~~~~~-sPesWca~---------------GNcfSLQkdh~~Aik~f~RAiQ--ldp~fa 455 (638)
T KOG1126|consen 394 STTLWHLQDEVALSYLAQDLIDTDPN-SPESWCAL---------------GNCFSLQKDHDTAIKCFKRAIQ--LDPRFA 455 (638)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhCCC-CcHHHHHh---------------cchhhhhhHHHHHHHHHHHhhc--cCCccc
Confidence 766543 33333331 34689999 7778888888888888876554 445 44
Q ss_pred HHHHHH-HHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007864 526 FTIDLC-SACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565 (587)
Q Consensus 526 ~TysLL-~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaL 565 (587)
++|+|+ .-+....++|.|+.-|...+ ..|..-|||.
T Consensus 456 YayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAw 492 (638)
T KOG1126|consen 456 YAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAW 492 (638)
T ss_pred hhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHH
Confidence 555333 23444566777777666553 4566667766
No 100
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=69.92 E-value=18 Score=41.20 Aligned_cols=186 Identities=12% Similarity=0.052 Sum_probs=110.2
Q ss_pred cCchHHHHHHHHH---HhcCCCCceE----EeccccCC-CCCCCCccchhhHHHHHH---c--CC-CCCCCC-CCchhHH
Q 007864 294 TFFMEDMEEQMLN---IKEKFEPVGF----VVGFPVGS-PEKDTPKQFSQAHVKAFL---S--KL-DSLPNF-KGMPICL 358 (587)
Q Consensus 294 ~k~~eal~~~~~m---~~~G~~Pd~~----Ty~sLL~a-c~~g~l~~A~~l~~~M~~---~--Gl-~pd~~t-ynipiaL 358 (587)
+++.+++..+-+. .+..+.++-. |++.|-.+ ++.|++++|........+ . |. .+++.. .+ .+
T Consensus 255 ~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~---~~ 331 (508)
T KOG1840|consen 255 GKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS---EL 331 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH---HH
Confidence 3455555444444 2333333322 33333333 678999988877766542 1 11 111111 23 45
Q ss_pred HHhhhcCCcHHH--H-Hh----cc---cCCCC----Ccchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCC
Q 007864 359 VNEYGTSKNLAK--R-VK----KF---VEKDA----KNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGC 423 (587)
Q Consensus 359 I~~y~k~G~l~e--r-Fd----~M---~~pd~----vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~ 423 (587)
...|+..++.++ . +. .. ..++. -+|+-| ..|-+.|++++|.++|++-....-.+.
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~---------- 401 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL---------- 401 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc----------
Confidence 566667777776 2 22 11 12222 479999 999999999999999987654400011
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhc
Q 007864 424 PNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLN 503 (587)
Q Consensus 424 ~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~ 503 (587)
+ .-+.. .-...|-| =..|.+.
T Consensus 402 ------~---------------------~~~~~-----------------~~~~l~~l---------------a~~~~~~ 422 (508)
T KOG1840|consen 402 ------G---------------------KKDYG-----------------VGKPLNQL---------------AEAYEEL 422 (508)
T ss_pred ------c---------------------CcChh-----------------hhHHHHHH---------------HHHHHHh
Confidence 0 00000 01223444 6678888
Q ss_pred CCHHHHHHHHHH----HHhcCC-CCCH-HHH-HHHHHHhcCCCHHHHHHHHHHHH
Q 007864 504 GWYAEALGLFQT----MRVDYI-EANE-FTI-DLCSACLAGDDLRKGGELHHKTL 551 (587)
Q Consensus 504 G~~~eAl~Lf~e----M~~~Gi-~PD~-~Ty-sLL~ac~~~G~l~~A~~l~~~M~ 551 (587)
+..++|.++|.+ |+..|. .||. .|| .|...|...|+++.|.++.+.+.
T Consensus 423 k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 423 KKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 889999999877 434442 2333 567 99999999999999999998876
No 101
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=69.58 E-value=29 Score=29.44 Aligned_cols=56 Identities=18% Similarity=0.133 Sum_probs=46.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 496 VISGFSLNGWYAEALGLFQTMRVDYIEAN----EFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 496 LI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD----~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
....+.+.|++++|.+.|+++.... |+ ...+ .+-..+.+.|++++|...+..+.+.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 68 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK 68 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 3677889999999999999998652 33 2345 7888899999999999999999875
No 102
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.45 E-value=19 Score=39.43 Aligned_cols=78 Identities=12% Similarity=-0.094 Sum_probs=50.2
Q ss_pred CCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc----CCCCCcchhhhhcccCCChhHHHHH
Q 007864 329 TPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV----EKDAKNWSGPGSYPSTKSFHTNRLQ 401 (587)
Q Consensus 329 ~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~----~pd~vtYNsL~gy~r~G~~eeAl~L 401 (587)
.++-|.+.|...-.++...|+.-.. -++-+.+--.-++++ - +..++ .-|.+.||--.+++-.|.+.+|.++
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGR--QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGR--QSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHHHHHhcccccccccccch--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHH
Confidence 4556888888887888888876654 023333333344444 1 23332 3577778766888889999999999
Q ss_pred HHHHhhc
Q 007864 402 AKRQLRR 408 (587)
Q Consensus 402 f~eM~~~ 408 (587)
|-.....
T Consensus 416 f~~is~~ 422 (557)
T KOG3785|consen 416 FIRISGP 422 (557)
T ss_pred HhhhcCh
Confidence 9655433
No 103
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=68.77 E-value=18 Score=33.08 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=23.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh-----cCCCCCHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRV-----DYIEANEFTI 528 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~-----~Gi~PD~~Ty 528 (587)
|.+|.+.|+..+|++.|+++.. -|+.|+..|-
T Consensus 103 m~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 103 MRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 9999999999999999998753 4999998775
No 104
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.96 E-value=96 Score=36.49 Aligned_cols=235 Identities=13% Similarity=0.048 Sum_probs=134.0
Q ss_pred hhhhhhccCchHHHHHHHHHHhcCCCCceE-EeccccCC-CCCCCCccchhhHHHHHHcCCCCCCCCCCchhH-HHHhhh
Q 007864 287 EDIEAESTFFMEDMEEQMLNIKEKFEPVGF-VVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPIC-LVNEYG 363 (587)
Q Consensus 287 ~~~~r~s~k~~eal~~~~~m~~~G~~Pd~~-Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~~tynipia-LI~~y~ 363 (587)
..+-++.++..+++..+..+++ ..|+-+ .|..+-.+ ...|+.+.|.+.|.+.++. .||.+... + +=+.+-
T Consensus 123 aN~~kerg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~---s~lgnLlk 195 (966)
T KOG4626|consen 123 ANILKERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCAR---SDLGNLLK 195 (966)
T ss_pred HHHHHHhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhh---cchhHHHH
Confidence 3333466777788777776653 344322 34444333 3688999999988887654 45544333 2 222223
Q ss_pred cCCcHHH--H--Hhccc-CCC-CCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 007864 364 TSKNLAK--R--VKKFV-EKD-AKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIAR 436 (587)
Q Consensus 364 k~G~l~e--r--Fd~M~-~pd-~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~ 436 (587)
..|++++ . .+.+. .|. .+.|+-| ..+-..|+..+|+.-|++-..- .|+- +.
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl-------------------dP~f---~d 253 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL-------------------DPNF---LD 253 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC-------------------CCcc---hH
Confidence 3566666 2 34333 454 5789999 9999999999999999988755 4442 22
Q ss_pred HHHHH-----------HHHHHHHHh--hCccHH-HHH---------HHHHH--HHHhcCC--CCC-hhhhHHHHHhHHhh
Q 007864 437 LWAAR-----------RDVINGVVS--IGEYVC-VAE---------ILVML--LFLDGIK--RPD-LVAWSSLLSVHEEW 488 (587)
Q Consensus 437 aca~~-----------~~lh~~m~k--~~pd~~-vyn---------aLI~~--~vFd~M~--~pd-vvTyNsLI~gy~km 488 (587)
+|.+. +.+-..... ..|+-. ++. -+|++ .-+++-. +|+ ...||-|-.++-..
T Consensus 254 AYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 254 AYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDK 333 (966)
T ss_pred HHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc
Confidence 33222 111111111 333221 111 12222 2233222 233 34566664444332
Q ss_pred c------------------CcCHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH-H-HHHHHHhcCCCHHHHHHHH
Q 007864 489 A------------------SRRVV-LVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-I-DLCSACLAGDDLRKGGELH 547 (587)
Q Consensus 489 ~------------------~~dvv-sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~T-y-sLL~ac~~~G~l~~A~~l~ 547 (587)
| -.|.. .|=..|...|++++|..+|..-.+ +.|+-.. + .|-.-|-..|++++|..-+
T Consensus 334 G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Y 411 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCY 411 (966)
T ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHH
Confidence 2 12222 566777888888888888875543 5566543 3 6677777888888888888
Q ss_pred HHHHH
Q 007864 548 HKTLR 552 (587)
Q Consensus 548 ~~M~k 552 (587)
++.++
T Consensus 412 kealr 416 (966)
T KOG4626|consen 412 KEALR 416 (966)
T ss_pred HHHHh
Confidence 88776
No 105
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=66.94 E-value=37 Score=32.09 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=46.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEAN--EFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD--~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
-..|.+.|++++|...|++.....-.++ ...+ .+-..+.+.|+.++|...+...++.
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 42 GMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6778889999999999999876543333 3466 8888889999999999999988874
No 106
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=66.41 E-value=36 Score=31.25 Aligned_cols=52 Identities=23% Similarity=0.218 Sum_probs=37.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKT 550 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M 550 (587)
-..+...|++++|+..++........| ..+ ..=..+.+.|+.++|+..|...
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~--~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKA--LAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHH--HHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 556778999999999997754444332 234 5566688899999999988753
No 107
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=66.38 E-value=11 Score=30.56 Aligned_cols=27 Identities=7% Similarity=0.107 Sum_probs=22.2
Q ss_pred Ccchhh-hhcccCCChhHHHHHHHHHhh
Q 007864 381 KNWSGP-GSYPSTKSFHTNRLQAKRQLR 407 (587)
Q Consensus 381 vtYNsL-~gy~r~G~~eeAl~Lf~eM~~ 407 (587)
.+|+.+ ..|.+.|++++|++.|++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~ 33 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALD 33 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 367888 999999999999999987764
No 108
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=66.28 E-value=25 Score=39.47 Aligned_cols=63 Identities=16% Similarity=0.118 Sum_probs=54.8
Q ss_pred ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH----HH-HHHHHHhcCCCHHHHHHHHH
Q 007864 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF----TI-DLCSACLAGDDLRKGGELHH 548 (587)
Q Consensus 474 dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~----Ty-sLL~ac~~~G~l~~A~~l~~ 548 (587)
+...|+.+ -.+|.+.|++++|+..|++-.+ +.||.. +| .+-.+|.+.|++++|.+.+.
T Consensus 74 ~a~a~~NL---------------G~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lr 136 (453)
T PLN03098 74 TAEDAVNL---------------GLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLR 136 (453)
T ss_pred CHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56678888 8899999999999999998555 467754 58 99999999999999999999
Q ss_pred HHHHc
Q 007864 549 KTLRT 553 (587)
Q Consensus 549 ~M~k~ 553 (587)
..++.
T Consensus 137 rALel 141 (453)
T PLN03098 137 TALRD 141 (453)
T ss_pred HHHHh
Confidence 99885
No 109
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=65.89 E-value=1.6e+02 Score=34.11 Aligned_cols=67 Identities=18% Similarity=0.107 Sum_probs=53.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
=+.|-+.+++++|+..|+.-.... .-|..|+ ++--.+...|+++.|...+++.. ++.||..+.+.|+
T Consensus 462 GH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 462 GHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELL 529 (611)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHH
Confidence 678899999999999999866542 2355666 77777888999999999888664 6789988887776
No 110
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=65.85 E-value=71 Score=30.17 Aligned_cols=59 Identities=12% Similarity=0.145 Sum_probs=38.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH-H-HHHHHHhcCCC--------------HHHHHHHHHHHHHcCCCCCH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFT-I-DLCSACLAGDD--------------LRKGGELHHKTLRTGLHHTE 559 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~T-y-sLL~ac~~~G~--------------l~~A~~l~~~M~k~G~~pd~ 559 (587)
-..|.+.|++++|.+.+++.... .|+... + .+-..+...|+ +++|.+++....+. .|+.
T Consensus 79 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~--~p~~ 153 (172)
T PRK02603 79 GIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL--APNN 153 (172)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh--Cchh
Confidence 77788999999999999987763 455443 3 55556666665 35556666555543 3543
No 111
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=65.35 E-value=56 Score=34.38 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=40.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 503 NGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 503 ~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
.+.+.+|+.+|+||... +.++..+. .+..+....|++++|.+++.+..+..
T Consensus 180 ~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp TTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred chhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 44799999999998654 56788888 89999999999999999999876543
No 112
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=64.77 E-value=27 Score=42.28 Aligned_cols=112 Identities=15% Similarity=0.096 Sum_probs=71.0
Q ss_pred CCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHH
Q 007864 378 KDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVC 456 (587)
Q Consensus 378 pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~ 456 (587)
.|.+.=|-+ -.++..|++++|.++|...++. +.
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa---~~------------------------------------------- 677 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREA---TS------------------------------------------- 677 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHH---Hh-------------------------------------------
Confidence 577788888 8888888888888888888776 22
Q ss_pred HHHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHH-HhcCCCCCHHHH-HHHHHH
Q 007864 457 VAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTM-RVDYIEANEFTI-DLCSAC 534 (587)
Q Consensus 457 vynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM-~~~Gi~PD~~Ty-sLL~ac 534 (587)
.+.-+|=-+ -+.|...|++..|+++|+.- ...+-+-+.... .|-.++
T Consensus 678 ----------------~~~dv~lNl---------------ah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 678 ----------------DFEDVWLNL---------------AHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred ----------------hCCceeeeH---------------HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 011224334 56677777777777777763 333433333444 677777
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 535 LAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 535 ~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
-+.|.+.++++..-.....-..-..+.+|..+
T Consensus 727 y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 727 YEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 77777777777666655544444444555443
No 113
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=63.72 E-value=94 Score=29.08 Aligned_cols=52 Identities=12% Similarity=0.052 Sum_probs=36.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHH-HHHHHHh-------cCCCHHHHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANE-FTI-DLCSACL-------AGDDLRKGGELHHKT 550 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~-~Ty-sLL~ac~-------~~G~l~~A~~l~~~M 550 (587)
=..|.+.|++++|++.+++.... .|+. .++ .+...+. ..|+++.|...+++.
T Consensus 79 g~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 79 GLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 66788999999999999887753 4443 334 5555555 778888776666544
No 114
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=62.90 E-value=48 Score=35.41 Aligned_cols=87 Identities=9% Similarity=0.007 Sum_probs=67.3
Q ss_pred HHHhcCC--CCChhhhHHHHHhHHhhcCcCHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhc
Q 007864 465 LFLDGIK--RPDLVAWSSLLSVHEEWASRRVVLVISGFSLN-----GWYAEALGLFQTMRVDYIEANEFTI-DLCSACLA 536 (587)
Q Consensus 465 ~vFd~M~--~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~-----G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~ 536 (587)
+.|.... ++|--+|-++ +.-|... ++++--.--++.|.+-|++-|..+| .||+.+-+
T Consensus 55 ~~F~aa~~~~RdK~sfl~~---------------V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAA---------------VATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred hhhhccCcccccHHHHHHH---------------HHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 6777776 6788888888 5555443 4555555667889999999999999 99998765
Q ss_pred CC----------------CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 537 GD----------------DLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 537 ~G----------------~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
.. .-+-|..++++|.-.|+-||-.+-..||
T Consensus 120 gkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 120 GKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred cccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 43 2234778999999999999999888777
No 115
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=62.50 E-value=1.1e+02 Score=38.84 Aligned_cols=169 Identities=11% Similarity=0.031 Sum_probs=110.1
Q ss_pred CCCCCccchhhHHHHHHc-CCCCC---CCCCCchhHHHHhhhcCCcHHH--H-HhcccC-CCC-Ccchhh-hhcccCCCh
Q 007864 326 EKDTPKQFSQAHVKAFLS-KLDSL---PNFKGMPICLVNEYGTSKNLAK--R-VKKFVE-KDA-KNWSGP-GSYPSTKSF 395 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~-Gl~pd---~~tynipiaLI~~y~k~G~l~e--r-Fd~M~~-pd~-vtYNsL-~gy~r~G~~ 395 (587)
..+..+.|+++.++.++. ++.-. ..+|- ++++.-.-.|.-+. + |++..+ -|. ..|..| .-|.+.+..
T Consensus 1470 elsEiekAR~iaerAL~tIN~REeeEKLNiWi---A~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~ 1546 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAERALKTINFREEEEKLNIWI---AYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKN 1546 (1710)
T ss_pred hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHH---HHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcc
Confidence 567888999998888753 22221 23455 88887777775555 6 988764 333 468889 999999999
Q ss_pred hHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHH---HHHHHHHHh---hCcc-----HHHHHHHHH
Q 007864 396 HTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKF-IARLWAAR---RDVINGVVS---IGEY-----VCVAEILVM 463 (587)
Q Consensus 396 eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~T-yL~aca~~---~~lh~~m~k---~~pd-----~~vynaLI~ 463 (587)
++|-++|+.|.+++ |- .+-.-+ |....-+. +..|+.+.+ +.|- .+.-.+-+.
T Consensus 1547 ~~A~ell~~m~KKF--~q--------------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1547 DEADELLRLMLKKF--GQ--------------TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred hhHHHHHHHHHHHh--cc--------------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 99999999999985 42 222222 24444333 344444333 3332 222222222
Q ss_pred H---------HHHhcCCC---CChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 007864 464 L---------LFLDGIKR---PDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI 528 (587)
Q Consensus 464 ~---------~vFd~M~~---pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty 528 (587)
. .+|+.... +-.-.||.. |+.=.++|+.+.+..+|++....++.|-..-|
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VY---------------id~eik~~~~~~vR~lfeRvi~l~l~~kkmKf 1672 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVY---------------IDMEIKHGDIKYVRDLFERVIELKLSIKKMKF 1672 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHH---------------HHHHHccCCHHHHHHHHHHHHhcCCChhHhHH
Confidence 2 36666542 245579988 99999999999999999999988887765443
No 116
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=61.97 E-value=6.6 Score=28.92 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=24.8
Q ss_pred cchhh-hhcccCCChhHHHHHHHHHhhc
Q 007864 382 NWSGP-GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 382 tYNsL-~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
+|..+ ..|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46778 9999999999999999999988
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=61.70 E-value=70 Score=36.19 Aligned_cols=114 Identities=10% Similarity=0.003 Sum_probs=75.4
Q ss_pred hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH----HHHHHHHHhhCccHHHHHHHH
Q 007864 387 GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAAR----RDVINGVVSIGEYVCVAEILV 462 (587)
Q Consensus 387 ~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~----~~lh~~m~k~~pd~~vynaLI 462 (587)
-.+.+.|+.++|+..+++.... .||..-|...-+.. .+.++..
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-------------------~P~N~~~~~~~~~i~~~~nk~~~A~-------------- 360 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-------------------QPDNPYYLELAGDILLEANKAKEAI-------------- 360 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-------------------CCCCHHHHHHHHHHHHHcCChHHHH--------------
Confidence 4456788999999999998877 88888772222221 1111111
Q ss_pred HHHHHhcCC--CCC-hhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCC
Q 007864 463 MLLFLDGIK--RPD-LVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGD 538 (587)
Q Consensus 463 ~~~vFd~M~--~pd-vvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G 538 (587)
+.|+.+. .|+ .+.|=.+ =.+|.+.|+..+|..++++-... ..-|...| .|-.+|...|
T Consensus 361 --e~~~kal~l~P~~~~l~~~~---------------a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 361 --ERLKKALALDPNSPLLQLNL---------------AQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELG 422 (484)
T ss_pred --HHHHHHHhcCCCccHHHHHH---------------HHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhC
Confidence 2333332 243 2233333 67789999999999999987655 34577888 9999999988
Q ss_pred CHHHHHHHHHHHH
Q 007864 539 DLRKGGELHHKTL 551 (587)
Q Consensus 539 ~l~~A~~l~~~M~ 551 (587)
+..++..-..++.
T Consensus 423 ~~~~a~~A~AE~~ 435 (484)
T COG4783 423 NRAEALLARAEGY 435 (484)
T ss_pred chHHHHHHHHHHH
Confidence 8887777666554
No 118
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=61.02 E-value=57 Score=30.23 Aligned_cols=66 Identities=9% Similarity=-0.057 Sum_probs=50.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANE-FTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~-~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaL 565 (587)
-..+.+.|++++|...|+.... +.|+. ..| .+-.+|...|++++|...++...+..- .+...+..+
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~l 98 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQT 98 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHH
Confidence 6678899999999999999775 45644 455 888889999999999999999998542 233344433
No 119
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=60.44 E-value=9.4 Score=31.67 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=38.9
Q ss_pred cCCHHHHHHHHHHHHhcCC-CCCHHHH-HHHHHHhcCCCHHHHHHHHHH
Q 007864 503 NGWYAEALGLFQTMRVDYI-EANEFTI-DLCSACLAGDDLRKGGELHHK 549 (587)
Q Consensus 503 ~G~~~eAl~Lf~eM~~~Gi-~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~ 549 (587)
.|++++|+.+|+++.+..- .||...+ .+-.++.+.|+.++|.++++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6899999999999998644 2355556 889999999999999999988
No 120
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=60.00 E-value=49 Score=29.24 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=46.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEA-NEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~P-D~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
...+.+.|++++|.+.|+.....+ | |...+ .+-..+.+.|+.++|..+++..++.+
T Consensus 24 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 24 AYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred HHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 677889999999999999987754 4 44555 77778888999999999999988765
No 121
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=59.92 E-value=5.6 Score=28.18 Aligned_cols=25 Identities=8% Similarity=0.061 Sum_probs=21.5
Q ss_pred cchhh-hhcccCCChhHHHHHHHHHh
Q 007864 382 NWSGP-GSYPSTKSFHTNRLQAKRQL 406 (587)
Q Consensus 382 tYNsL-~gy~r~G~~eeAl~Lf~eM~ 406 (587)
+|+.| ..|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889 99999999999999999854
No 122
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=59.82 E-value=6.2 Score=30.87 Aligned_cols=51 Identities=8% Similarity=0.085 Sum_probs=40.2
Q ss_pred HHHhhhcCCcHHH--H-HhcccC--C-CCCcchhh-hhcccCCChhHHHHHHHHHhhc
Q 007864 358 LVNEYGTSKNLAK--R-VKKFVE--K-DAKNWSGP-GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 358 LI~~y~k~G~l~e--r-Fd~M~~--p-d~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
+-..|.+.|++++ + |++..+ | +.-.|..+ ..+.+.|++++|...|++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456778899999 5 877654 3 55678888 9999999999999999999877
No 123
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.08 E-value=2.1e+02 Score=32.57 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=48.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHh-cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACL-AGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~-~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
-.-|....-+++|...|++- .=++||..-| .++..|. +.|++.+|..++.+..++ |.-|.....-|+
T Consensus 633 ~ayyidtqf~ekai~y~eka--aliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflv 701 (840)
T KOG2003|consen 633 AAYYIDTQFSEKAINYFEKA--ALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLV 701 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHH--HhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHH
Confidence 33466667788999999854 4489999999 7776665 579999999999988664 444444444444
No 124
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=58.73 E-value=1.1e+02 Score=29.69 Aligned_cols=22 Identities=9% Similarity=-0.176 Sum_probs=18.2
Q ss_pred hhcccCCChhHHHHHHHHHhhc
Q 007864 387 GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 387 ~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
.-+.+.|++++|..+|+-.-.-
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~ 64 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIY 64 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 4466889999999999988766
No 125
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.25 E-value=58 Score=35.46 Aligned_cols=149 Identities=11% Similarity=0.062 Sum_probs=91.0
Q ss_pred hhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---HHHHHHH------HHHHHHHHhhCc
Q 007864 384 SGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---ARLWAAR------RDVINGVVSIGE 453 (587)
Q Consensus 384 NsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L~aca~~------~~lh~~m~k~~p 453 (587)
+-| ..|.+-|.+.+|.+.|+.-... .|-..|| -++|-+. ..+++..++..|
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q-------------------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP 287 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ-------------------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP 287 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc-------------------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC
Confidence 557 9999999999999999998887 5555566 5666665 222333333233
Q ss_pred cHHHHHHHHHH-HHHhcCCCC-C-hhhhHHHHHhHHhhcCcCHH---HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 007864 454 YVCVAEILVML-LFLDGIKRP-D-LVAWSSLLSVHEEWASRRVV---LVISGFSLNGWYAEALGLFQTMRVDYIEANEFT 527 (587)
Q Consensus 454 d~~vynaLI~~-~vFd~M~~p-d-vvTyNsLI~gy~km~~~dvv---sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~T 527 (587)
..+||- ..+ ++.+.|.+- | +--|--. .|...-+|- .+-.+|--.++.+-|+..|++..+.|+. +..-
T Consensus 288 ~~VT~l--~g~ARi~eam~~~~~a~~lYk~v----lk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speL 360 (478)
T KOG1129|consen 288 FDVTYL--LGQARIHEAMEQQEDALQLYKLV----LKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPEL 360 (478)
T ss_pred chhhhh--hhhHHHHHHHHhHHHHHHHHHHH----HhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHH
Confidence 333332 222 566655431 1 1111111 011111222 4467788888888888888888888876 5556
Q ss_pred H-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 007864 528 I-DLCSACLAGDDLRKGGELHHKTLRTGLHHT 558 (587)
Q Consensus 528 y-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd 558 (587)
| .+=-+|.-.+.+|.+.--+......--.|+
T Consensus 361 f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~ 392 (478)
T KOG1129|consen 361 FCNIGLCCLYAQQIDLVLPSFQRALSTATQPG 392 (478)
T ss_pred HhhHHHHHHhhcchhhhHHHHHHHHhhccCcc
Confidence 6 666666677888888887777776554444
No 126
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=58.13 E-value=38 Score=38.02 Aligned_cols=31 Identities=19% Similarity=-0.020 Sum_probs=27.1
Q ss_pred CCCCcchhh-hhcccCCChhHHHHHHHHHhhc
Q 007864 378 KDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 378 pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
.+...|+.+ .+|.+.|++++|+..|++-.+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL 104 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL 104 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 356789999 9999999999999999987765
No 127
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=56.91 E-value=84 Score=32.58 Aligned_cols=152 Identities=11% Similarity=0.024 Sum_probs=98.4
Q ss_pred HHHHhhhcCCcHHH--H-HhcccC--C-CCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCC
Q 007864 357 CLVNEYGTSKNLAK--R-VKKFVE--K-DAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPP 429 (587)
Q Consensus 357 aLI~~y~k~G~l~e--r-Fd~M~~--p-d~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~P 429 (587)
.|=-+|...|+... . +++-.+ | +.-+|.++ ..|-+.|..+.|.+-|+.-... .|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-------------------~p 100 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL-------------------AP 100 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-------------------CC
Confidence 56667888888888 4 776543 4 44588888 9999999999999999887755 56
Q ss_pred CHHHHHHHHHHH----HHHHHHHHhhCccHHHHHHHHHHHHHhc-CCCCC----hhhhHHHHHhHHhhcCcCHHHHHHHH
Q 007864 430 DDKFIARLWAAR----RDVINGVVSIGEYVCVAEILVMLLFLDG-IKRPD----LVAWSSLLSVHEEWASRRVVLVISGF 500 (587)
Q Consensus 430 d~~TyL~aca~~----~~lh~~m~k~~pd~~vynaLI~~~vFd~-M~~pd----vvTyNsLI~gy~km~~~dvvsLI~gy 500 (587)
+.-..++-|+-- ....+.+ ..|++ |..|+ ..||.-+ --.-
T Consensus 101 ~~GdVLNNYG~FLC~qg~~~eA~----------------q~F~~Al~~P~Y~~~s~t~eN~---------------G~Ca 149 (250)
T COG3063 101 NNGDVLNNYGAFLCAQGRPEEAM----------------QQFERALADPAYGEPSDTLENL---------------GLCA 149 (250)
T ss_pred CccchhhhhhHHHHhCCChHHHH----------------HHHHHHHhCCCCCCcchhhhhh---------------HHHH
Confidence 655542222211 0000000 22332 22332 2356555 4445
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCH-HHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHH
Q 007864 501 SLNGWYAEALGLFQTMRVDYIEANE-FTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMK 561 (587)
Q Consensus 501 ~k~G~~~eAl~Lf~eM~~~Gi~PD~-~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~v 561 (587)
.+.|+.+.|.+.|++=.+. .||. .+. .+..-.-+.|+.-.|+..++..-..|- ++..+
T Consensus 150 l~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~s 209 (250)
T COG3063 150 LKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAES 209 (250)
T ss_pred hhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHH
Confidence 5789999999999886664 3333 455 788888889999999999888877665 44443
No 128
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=56.45 E-value=61 Score=30.39 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=46.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEAN--EFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD--~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
...+...|++++|+..|++-....-.|. ..+| .+-..+.+.|+.++|...++...+.
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 42 GMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7778889999999999998875532322 2477 8888899999999999999998865
No 129
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=56.20 E-value=32 Score=33.85 Aligned_cols=123 Identities=15% Similarity=0.094 Sum_probs=80.9
Q ss_pred CCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hh-cccCCC--hhHH
Q 007864 329 TPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GS-YPSTKS--FHTN 398 (587)
Q Consensus 329 ~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~g-y~r~G~--~eeA 398 (587)
..+++...+...++.. +.|...|. .|-..|...|+.++ . |++.. ..|...|..+ .+ |.+.|+ .++|
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~---~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWA---LLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHH---HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 3344444444444332 33455666 77778888899888 4 66543 3467788888 76 467777 5899
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCCCCChhhh
Q 007864 399 RLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAW 478 (587)
Q Consensus 399 l~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~~pdvvTy 478 (587)
.+++++-.+. .|+. ...+
T Consensus 130 ~~~l~~al~~-------------------dP~~-------------------------------------------~~al 147 (198)
T PRK10370 130 REMIDKALAL-------------------DANE-------------------------------------------VTAL 147 (198)
T ss_pred HHHHHHHHHh-------------------CCCC-------------------------------------------hhHH
Confidence 9999988877 3333 2345
Q ss_pred HHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007864 479 SSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTIDLCSA 533 (587)
Q Consensus 479 NsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~TysLL~a 533 (587)
..+ -..+.+.|++++|...|+++.+. ..||..-+.+|.+
T Consensus 148 ~~L---------------A~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~~i~~ 186 (198)
T PRK10370 148 MLL---------------ASDAFMQADYAQAIELWQKVLDL-NSPRVNRTQLVES 186 (198)
T ss_pred HHH---------------HHHHHHcCCHHHHHHHHHHHHhh-CCCCccHHHHHHH
Confidence 555 66778899999999999998765 3455555544444
No 130
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=55.83 E-value=52 Score=30.17 Aligned_cols=56 Identities=14% Similarity=0.087 Sum_probs=45.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 498 SGFSLNGWYAEALGLFQTMRVDYIEAN--EFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 498 ~gy~k~G~~~eAl~Lf~eM~~~Gi~PD--~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
.++-..|+.++|..+|++-...|...+ ...+ .+-+.+...|++++|..+++.....
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456678999999999999888887765 3456 7778888899999999999888764
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=55.32 E-value=31 Score=38.12 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=71.5
Q ss_pred HHHHhhhcCCcHHH--H-HhcccCCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHH
Q 007864 357 CLVNEYGTSKNLAK--R-VKKFVEKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDK 432 (587)
Q Consensus 357 aLI~~y~k~G~l~e--r-Fd~M~~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~ 432 (587)
+|+..+...++++. . |+++.+.+...+-.| ..|...++-.+|.+++++..+. .|+..
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-------------------~p~d~ 234 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-------------------NPQDS 234 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-------------------CCCCH
Confidence 45555566677777 5 888876665555667 7777778888888888888876 56554
Q ss_pred HHHHHHHHH---HHHHHHHHhhCccHHHHHHHHHHHHHhcCC--CC-ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCH
Q 007864 433 FIARLWAAR---RDVINGVVSIGEYVCVAEILVMLLFLDGIK--RP-DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWY 506 (587)
Q Consensus 433 TyL~aca~~---~~lh~~m~k~~pd~~vynaLI~~~vFd~M~--~p-dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~ 506 (587)
..|..-++. +.-.+.+. ++.++.. .| +..+|..| ...|.+.|++
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL---------------~iAk~av~lsP~~f~~W~~L---------------a~~Yi~~~d~ 284 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELAL---------------EIAKKAVELSPSEFETWYQL---------------AECYIQLGDF 284 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHH---------------HHHHHHHHhCchhHHHHHHH---------------HHHHHhcCCH
Confidence 332222211 00001110 2222222 24 34589999 9999999999
Q ss_pred HHHHHHHHHHHh
Q 007864 507 AEALGLFQTMRV 518 (587)
Q Consensus 507 ~eAl~Lf~eM~~ 518 (587)
++|+-.++.|..
T Consensus 285 e~ALlaLNs~Pm 296 (395)
T PF09295_consen 285 ENALLALNSCPM 296 (395)
T ss_pred HHHHHHHhcCcC
Confidence 999999988763
No 132
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=55.15 E-value=1e+02 Score=39.34 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=66.1
Q ss_pred HHHHHHHHh-hC-----ccHHHHHHHHHH-----------HHHhcCCC-CC-hhhhHHHHHhHHhhcCcCHHHHHHHHHh
Q 007864 442 RDVINGVVS-IG-----EYVCVAEILVML-----------LFLDGIKR-PD-LVAWSSLLSVHEEWASRRVVLVISGFSL 502 (587)
Q Consensus 442 ~~lh~~m~k-~~-----pd~~vynaLI~~-----------~vFd~M~~-pd-vvTyNsLI~gy~km~~~dvvsLI~gy~k 502 (587)
+.+.+.+++ +. .-.-+|.+++++ ++|++..+ -| ...|..| ..-|.+
T Consensus 1478 R~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L---------------~~iy~k 1542 (1710)
T KOG1070|consen 1478 RKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL---------------LGIYEK 1542 (1710)
T ss_pred HHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH---------------HHHHHH
Confidence 666666666 32 123578888887 67776653 22 2346666 899999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 503 NGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 503 ~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
.+++++|-++|+.|.+. +.-....| ..+..+.+..+-+.|..++.+.++
T Consensus 1543 ~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1543 SEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred hhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 99999999999999875 22344566 777777777777777777776654
No 133
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=55.05 E-value=46 Score=39.33 Aligned_cols=163 Identities=9% Similarity=-0.039 Sum_probs=98.2
Q ss_pred CCCCchhHHHHhhhcCCcHHH-H---Hhccc-CCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCC
Q 007864 350 NFKGMPICLVNEYGTSKNLAK-R---VKKFV-EKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGC 423 (587)
Q Consensus 350 ~tynipiaLI~~y~k~G~l~e-r---Fd~M~-~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~ 423 (587)
..|. -+|.+|+..|+.++ . ..++. +||...|..+ +..-+...+++|.++++.-..+- -- .-|-
T Consensus 425 emw~---~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA--~r------~~~~ 493 (777)
T KOG1128|consen 425 EMWD---PVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARA--QR------SLAL 493 (777)
T ss_pred HHHH---HHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHH--HH------hhcc
Confidence 3456 88999999997776 2 33344 7899999999 99888888999999988653320 00 0000
Q ss_pred CCCCCCCH------------------HHH-HHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcC--CCC-ChhhhHHH
Q 007864 424 PNYKPPDD------------------KFI-ARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGI--KRP-DLVAWSSL 481 (587)
Q Consensus 424 ~~~~~Pd~------------------~Ty-L~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M--~~p-dvvTyNsL 481 (587)
+.+-.+|- .|| -.+|+.. ++.. ..+-+ +-|..- .+| +.-+||.+
T Consensus 494 ~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~AL-qlek----~q~av---------~aF~rcvtL~Pd~~eaWnNl 559 (777)
T KOG1128|consen 494 LILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAAL-QLEK----EQAAV---------KAFHRCVTLEPDNAEAWNNL 559 (777)
T ss_pred ccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHH-HHhh----hHHHH---------HHHHHHhhcCCCchhhhhhh
Confidence 00001111 111 1111111 0000 00000 222222 246 45689999
Q ss_pred HHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 482 LSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 482 I~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
=.+|.+.|+-.+|...+.|-.+.. .-+-..| .-+....+.|.+++|.+.++.+.+.
T Consensus 560 ---------------s~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 560 ---------------STAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred ---------------hHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 999999999999999999877766 3333445 5555667889999999988877653
No 134
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=54.89 E-value=1.3e+02 Score=35.93 Aligned_cols=172 Identities=12% Similarity=0.085 Sum_probs=107.1
Q ss_pred CCCCCCCCCCchhHHHHhhhcCCcHHH--H-HhcccC---CCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCC
Q 007864 344 KLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFVE---KDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSS 416 (587)
Q Consensus 344 Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~~---pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~ 416 (587)
.+..|..+|. .|.-+...+|+++. + |++-.. .-...|+.+ ..|.-.|.-..|..|.++-... .-
T Consensus 318 ~~qnd~ai~d---~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~---~~--- 388 (799)
T KOG4162|consen 318 KFQNDAAIFD---HLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK---SE--- 388 (799)
T ss_pred hhcchHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc---cc---
Confidence 3455666777 77777788888888 6 876542 344578899 8888899988898888776544 21
Q ss_pred CCCCCCCCCCCCCCHHHH----HHHHHHH----HHHHHHHHh-----------hCccH-----HHHHHHHHH--------
Q 007864 417 YLPPEGCPNYKPPDDKFI----ARLWAAR----RDVINGVVS-----------IGEYV-----CVAEILVML-------- 464 (587)
Q Consensus 417 ~~~~~g~~~~~~Pd~~Ty----L~aca~~----~~lh~~m~k-----------~~pd~-----~vynaLI~~-------- 464 (587)
.|+..+- -+.|.+. ++..+++.+ +.|-. ++|.-.-..
T Consensus 389 -----------~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~ 457 (799)
T KOG4162|consen 389 -----------QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERD 457 (799)
T ss_pred -----------CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHH
Confidence 2544443 3334433 222233222 11111 111111100
Q ss_pred -------HHHh-----cCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHH
Q 007864 465 -------LFLD-----GIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLC 531 (587)
Q Consensus 465 -------~vFd-----~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL 531 (587)
..++ ++.+|+++-|=+| -|+..++++.|++..++-.+-+=.-+...| -+.
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~lal-----------------q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLA 520 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFYLAL-----------------QYAEQRQLTSALDYAREALALNRGDSAKAWHLLA 520 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHH-----------------HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 1122 2224555555555 577788999999999998887666678888 777
Q ss_pred HHHhcCCCHHHHHHHHHHHHH
Q 007864 532 SACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 532 ~ac~~~G~l~~A~~l~~~M~k 552 (587)
-.+...+++.+|..+.+....
T Consensus 521 LvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 521 LVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HHHhhhhhhHHHHHHHHHHHH
Confidence 777788899999998776553
No 135
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.08 E-value=76 Score=34.92 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HH-HHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DL-CSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 495 sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sL-L~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
.+-.+++..|.+.+|.++|-......+ -|.++| ++ .+++.+.+..+.|+.+ |++..-..+.++.--||
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~---~lk~~t~~e~fsLLqlI 467 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDM---MLKTNTPSERFSLLQLI 467 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHH---HHhcCCchhHHHHHHHH
Confidence 447899999999999999965544333 488899 54 4556677888777654 55555444555544455
No 136
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=51.98 E-value=24 Score=24.93 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=17.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMR 517 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~ 517 (587)
=..|.+.|++++|.++|++..
T Consensus 6 g~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 6 GRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 778999999999999998854
No 137
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=51.88 E-value=1.2e+02 Score=32.31 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=28.3
Q ss_pred CCCCcchhh-hhcccCCChhHHHHHHHHHhhc
Q 007864 378 KDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 378 pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
-|.-.|--| ..|.+.|+.+.|..-|.+-.+.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL 185 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRL 185 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 378899999 9999999999999999998876
No 138
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=50.12 E-value=1.1e+02 Score=33.81 Aligned_cols=170 Identities=12% Similarity=-0.045 Sum_probs=107.1
Q ss_pred ccccCC-CCCCCCccchhhHHHHHHcCCCCCC-------CCCCchhHHHHhhhcCCcHHH--H-HhcccC---CCCCcch
Q 007864 319 GFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLP-------NFKGMPICLVNEYGTSKNLAK--R-VKKFVE---KDAKNWS 384 (587)
Q Consensus 319 ~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~-------~tynipiaLI~~y~k~G~l~e--r-Fd~M~~---pd~vtYN 384 (587)
.....+ -..|++.....+...|.+.|.-.|. .+|+ .+++-....+..+. . +++.+. .+.-.-.
T Consensus 191 rLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~---glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~ 267 (400)
T COG3071 191 RLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWE---GLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVV 267 (400)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHH---HHHHHHhccccchHHHHHHHhccHHhhcChhHHH
Confidence 333444 2577788888888888888876654 3466 77777666666666 3 666652 2344444
Q ss_pred hh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-------HHHHHHHHhhCccHH
Q 007864 385 GP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAAR-------RDVINGVVSIGEYVC 456 (587)
Q Consensus 385 sL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~-------~~lh~~m~k~~pd~~ 456 (587)
++ .-+.+.|+.++|.++..+-.++ +. .|+-.++ -.+.+. +.+.....+...|.-
T Consensus 268 ~~a~~li~l~~~~~A~~~i~~~Lk~---~~--------------D~~L~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 268 AYAERLIRLGDHDEAQEIIEDALKR---QW--------------DPRLCRL-IPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHh---cc--------------ChhHHHH-HhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 56 6778999999999999998888 66 6664444 122211 222222222222222
Q ss_pred HHHHHHHH-----------HHHhcCC--CCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007864 457 VAEILVML-----------LFLDGIK--RPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEA 523 (587)
Q Consensus 457 vynaLI~~-----------~vFd~M~--~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~P 523 (587)
.+.+|=.. ..|+.-. .|+..+|+-+ =++|.+.|+..+|.+.+++=...-..|
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~l---------------a~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAEL---------------ADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHH---------------HHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 22222111 4444322 5899999999 999999999999999999866444444
Q ss_pred C
Q 007864 524 N 524 (587)
Q Consensus 524 D 524 (587)
+
T Consensus 395 ~ 395 (400)
T COG3071 395 N 395 (400)
T ss_pred C
Confidence 3
No 139
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=49.96 E-value=29 Score=27.17 Aligned_cols=30 Identities=10% Similarity=0.194 Sum_probs=25.4
Q ss_pred CCCcchhh-hhcccCCChhHHHHHHHHHhhc
Q 007864 379 DAKNWSGP-GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 379 d~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
+...|..+ ..+.+.|++++|++.|++-.+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~ 32 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL 32 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34578888 8899999999999999988877
No 140
>PLN02789 farnesyltranstransferase
Probab=49.48 E-value=3e+02 Score=29.44 Aligned_cols=27 Identities=11% Similarity=-0.075 Sum_probs=23.0
Q ss_pred cchhh-hhcccCCChhHHHHHHHHHhhc
Q 007864 382 NWSGP-GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 382 tYNsL-~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
+++.+ ..+...++.++|+.+..+..+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l 66 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL 66 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 56677 7788889999999999999877
No 141
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=49.38 E-value=12 Score=26.15 Aligned_cols=27 Identities=7% Similarity=0.118 Sum_probs=22.8
Q ss_pred Ccchhh-hhcccCCChhHHHHHHHHHhh
Q 007864 381 KNWSGP-GSYPSTKSFHTNRLQAKRQLR 407 (587)
Q Consensus 381 vtYNsL-~gy~r~G~~eeAl~Lf~eM~~ 407 (587)
.++|.| ..|...|++++|++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 367889 999999999999999998764
No 142
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=49.19 E-value=1.2e+02 Score=31.48 Aligned_cols=55 Identities=9% Similarity=-0.009 Sum_probs=41.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEAN----EFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD----~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
-..|...|++++|...|+.+... .|| ...+ .+...+...|+.++|+.+++.+++.
T Consensus 187 G~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 187 GQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45678889999999999999864 233 2223 4455666899999999999988875
No 143
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.91 E-value=74 Score=33.66 Aligned_cols=59 Identities=8% Similarity=0.074 Sum_probs=49.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLH 556 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~ 556 (587)
|.-....+++.+|+-+|+||-+. ..|+..|. ....+|-..|++++|..++.....+.-.
T Consensus 180 v~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 180 VKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred HHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 44445566799999999999754 78899999 9999999999999999999999876543
No 144
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=47.84 E-value=4e+02 Score=32.92 Aligned_cols=216 Identities=14% Similarity=0.061 Sum_probs=121.8
Q ss_pred EEeccccCC-CCCCCCccchhhHHHHHHcCCCCCCC--CCCchhHHHHhhhcCCcHHH--H-Hhc-cc-CCCCCcchh--
Q 007864 316 FVVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPN--FKGMPICLVNEYGTSKNLAK--R-VKK-FV-EKDAKNWSG-- 385 (587)
Q Consensus 316 ~Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~~--tynipiaLI~~y~k~G~l~e--r-Fd~-M~-~pd~vtYNs-- 385 (587)
+..+.|-+- ...|+.+.+..+...++..-..-... .|= .+=.+|-..|++++ . |-+ .. .+|-++++.
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y---~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFY---QLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHH---HHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 333444343 35777777777777776654211111 111 34456666677777 3 333 22 244444444
Q ss_pred h-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH--HHHHHHH---------HHHHHHHHh-hC
Q 007864 386 P-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI--ARLWAAR---------RDVINGVVS-IG 452 (587)
Q Consensus 386 L-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty--L~aca~~---------~~lh~~m~k-~~ 452 (587)
| ..|.+.|+.++|...|...... .||..-- |-+|.-. ......+.+ ..
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~-------------------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQ-------------------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHh-------------------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 4 7788888888888888888877 6665443 3333322 233344444 55
Q ss_pred ccHHHHHHHHHH-HHHhcCC-CCChhhhHHHHHhHHhhcC--cCHH--HHHHHHHhcCCHHHHHHHHHHHHhc---CCCC
Q 007864 453 EYVCVAEILVML-LFLDGIK-RPDLVAWSSLLSVHEEWAS--RRVV--LVISGFSLNGWYAEALGLFQTMRVD---YIEA 523 (587)
Q Consensus 453 pd~~vynaLI~~-~vFd~M~-~pdvvTyNsLI~gy~km~~--~dvv--sLI~gy~k~G~~~eAl~Lf~eM~~~---Gi~P 523 (587)
+..+-+++-|.. .+++.-. ...+..|+..++-++.-+. |-.+ .+=.-+...|++++|.+.|.+-... -..+
T Consensus 409 ~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 409 QTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred cccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 555555555554 3333211 1124445555444444222 2222 5566678899999999999876654 2344
Q ss_pred CH-----HHH--HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 524 NE-----FTI--DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 524 D~-----~Ty--sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
|. +|. -+-...-..++.+.|.+++..+++.
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44 344 4444455667899999999888764
No 145
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.75 E-value=2.9e+02 Score=34.62 Aligned_cols=146 Identities=8% Similarity=0.039 Sum_probs=80.1
Q ss_pred hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCC-------CCCCHH-HH---HHHH-----HHH---HHHHHH
Q 007864 387 GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNY-------KPPDDK-FI---ARLW-----AAR---RDVING 447 (587)
Q Consensus 387 ~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~-------~~Pd~~-Ty---L~ac-----a~~---~~lh~~ 447 (587)
.+|.-++.+.+-+++++...-. .++|......-+. +.|..+ .| |+-| +.. .+++++
T Consensus 992 kAfMtadLp~eLIELLEKIvL~-----~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEE 1066 (1666)
T KOG0985|consen 992 KAFMTADLPNELIELLEKIVLD-----NSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEE 1066 (1666)
T ss_pred HHHHhcCCcHHHHHHHHHHhcC-----CcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHH
Confidence 6777778888888888877655 2334422221111 112111 12 1111 000 333333
Q ss_pred HHh----hCccHHHHHHHHHH--------HHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHH
Q 007864 448 VVS----IGEYVCVAEILVML--------LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQT 515 (587)
Q Consensus 448 m~k----~~pd~~vynaLI~~--------~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~e 515 (587)
... +.-+....+.||+- +.-++..+|. .|+.+ -.+-.+.|.+.+|.+-|-+
T Consensus 1067 AF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~--vWsql---------------akAQL~~~~v~dAieSyik 1129 (1666)
T KOG0985|consen 1067 AFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPA--VWSQL---------------AKAQLQGGLVKDAIESYIK 1129 (1666)
T ss_pred HHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChH--HHHHH---------------HHHHHhcCchHHHHHHHHh
Confidence 322 55666677777765 2223333443 47777 6677777777777666533
Q ss_pred HHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHH
Q 007864 516 MRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEM 560 (587)
Q Consensus 516 M~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~ 560 (587)
-. |...| .++..+.+.|.+++-...+....++.-+|.+.
T Consensus 1130 ad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id 1169 (1666)
T KOG0985|consen 1130 AD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID 1169 (1666)
T ss_pred cC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch
Confidence 21 55666 77777777777777777666666666666544
No 146
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.39 E-value=2.8e+02 Score=30.12 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=44.8
Q ss_pred HHhcCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 007864 500 FSLNGWYAEALGLFQTMRV-DYIEANEFTIDLCSACLAGDDLRKGGELHHKTLRTGLH 556 (587)
Q Consensus 500 y~k~G~~~eAl~Lf~eM~~-~Gi~PD~~TysLL~ac~~~G~l~~A~~l~~~M~k~G~~ 556 (587)
.-+.|++++|++-|++-.+ .|..|- ..|.+--+.-+.|+.+.|.+...+++++|++
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpl-lAYniALaHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALAHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCch-hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Confidence 4589999999999998655 677764 5675555566788999999999999999874
No 147
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=46.81 E-value=40 Score=23.36 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=18.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 007864 497 ISGFSLNGWYAEALGLFQTMRV 518 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~ 518 (587)
-..|...|++++|+.++++...
T Consensus 9 a~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 9 ANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhcchhhHHHHHHHH
Confidence 8889999999999999998664
No 148
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=46.47 E-value=22 Score=38.39 Aligned_cols=79 Identities=9% Similarity=-0.027 Sum_probs=62.2
Q ss_pred CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhcccCCChhHH
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSYPSTKSFHTN 398 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~G~~eeA 398 (587)
..|+++.|.+.+.+.++..- -+...|. .+-.+|.+.|++++ . +++.. ..+...|..+ .+|.+.|++++|
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P-~~~~a~~---~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDP-NNAELYA---DRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 46889999999999987542 2334455 67778889999999 4 66654 2356788899 999999999999
Q ss_pred HHHHHHHhhc
Q 007864 399 RLQAKRQLRR 408 (587)
Q Consensus 399 l~Lf~eM~~~ 408 (587)
++.|++..+.
T Consensus 90 ~~~~~~al~l 99 (356)
T PLN03088 90 KAALEKGASL 99 (356)
T ss_pred HHHHHHHHHh
Confidence 9999999877
No 149
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=45.59 E-value=25 Score=27.84 Aligned_cols=49 Identities=10% Similarity=0.177 Sum_probs=39.6
Q ss_pred HhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhcccCCChhHHHHHHHHHhhc
Q 007864 360 NEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 360 ~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
..|.+.+++++ + ++.+. ..+...|-.. ..|.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778888888 4 66654 3466778888 9999999999999999999887
No 150
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=43.71 E-value=76 Score=36.36 Aligned_cols=60 Identities=10% Similarity=0.080 Sum_probs=44.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007864 499 GFSLNGWYAEALGLFQTMRVDYIEANEFTI--DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKA 562 (587)
Q Consensus 499 gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty--sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vy 562 (587)
-+...|++++|++.+++ ..+..+|..++ ..-..+.+.|+.++|..++..+++.+ ||...|
T Consensus 13 il~e~g~~~~AL~~L~~--~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Y 74 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEK--NEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDY 74 (517)
T ss_pred HHHHCCCHHHHHHHHHh--hhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHH
Confidence 35778888888888865 34456777777 66777788888888888888888876 444433
No 151
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=43.45 E-value=1e+02 Score=29.84 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=41.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 007864 500 FSLNGWYAEALGLFQTMRVDYIEANEFTI--DLCSACLAGDDLRKGGELHHKTLRTGL 555 (587)
Q Consensus 500 y~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty--sLL~ac~~~G~l~~A~~l~~~M~k~G~ 555 (587)
+...|++++|..+|+-... +.|....| .|=-.|-..|++++|...+........
T Consensus 45 ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ 100 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI 100 (157)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 6788999999999987665 56777776 555555567889999998888887664
No 152
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.08 E-value=3.3e+02 Score=31.88 Aligned_cols=71 Identities=14% Similarity=0.121 Sum_probs=48.1
Q ss_pred HHHHhcCCHHHHHHHHHHHH-------------hcCCCCCHHHH--HHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---H
Q 007864 498 SGFSLNGWYAEALGLFQTMR-------------VDYIEANEFTI--DLCSACLAGDDLRKGGELHHKTLRTGLHHT---E 559 (587)
Q Consensus 498 ~gy~k~G~~~eAl~Lf~eM~-------------~~Gi~PD~~Ty--sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd---~ 559 (587)
-.+..+|++.+|+++++.-. +.+++-+..+. .+--.+-..|+..+|.+++...++....-. .
T Consensus 183 c~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~A 262 (652)
T KOG2376|consen 183 CILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLA 262 (652)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHH
Confidence 34678999999999998761 12333344444 555566788999999999999998875322 1
Q ss_pred HHHHHHHHH
Q 007864 560 MKAVALGLI 568 (587)
Q Consensus 560 ~vynaLIal 568 (587)
+.-|-|+++
T Consensus 263 v~~NNLva~ 271 (652)
T KOG2376|consen 263 VAVNNLVAL 271 (652)
T ss_pred HHhcchhhh
Confidence 233555554
No 153
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=42.24 E-value=3.5e+02 Score=32.15 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=25.6
Q ss_pred Ccchhh-hhcccCCChhHHHHHHHHHhhc
Q 007864 381 KNWSGP-GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 381 vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
..|++| .-|.+.|.+++|.++|++-...
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 589999 9999999999999999987665
No 154
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=41.88 E-value=15 Score=41.32 Aligned_cols=89 Identities=9% Similarity=0.020 Sum_probs=61.3
Q ss_pred eEEeccccCC-CCCCCCccchhhHHHHHHcC-CCCCCCCCCchhHHHHhhhcCCcHHH-H-Hhc-cc-CCCCCcchhh--
Q 007864 315 GFVVGFPVGS-PEKDTPKQFSQAHVKAFLSK-LDSLPNFKGMPICLVNEYGTSKNLAK-R-VKK-FV-EKDAKNWSGP-- 386 (587)
Q Consensus 315 ~~Ty~sLL~a-c~~g~l~~A~~l~~~M~~~G-l~pd~~tynipiaLI~~y~k~G~l~e-r-Fd~-M~-~pd~vtYNsL-- 386 (587)
.++|+..+++ -+...++.|+.+|.++.+.| +.+++++++ ++|.-||....... + |+- |. -||+-.|--=
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~---A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYC---AFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeH---HHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHH
Confidence 4566677777 45667888999999998888 678888888 99988887776666 6 653 22 3565544332
Q ss_pred hhcccCCChhHHHHHHHHHh
Q 007864 387 GSYPSTKSFHTNRLQAKRQL 406 (587)
Q Consensus 387 ~gy~r~G~~eeAl~Lf~eM~ 406 (587)
.-+.+-++-+.|..||+.-.
T Consensus 474 ~fLi~inde~naraLFetsv 493 (660)
T COG5107 474 LFLIRINDEENARALFETSV 493 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhH
Confidence 44555666677777776443
No 155
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=41.18 E-value=93 Score=28.53 Aligned_cols=60 Identities=10% Similarity=0.013 Sum_probs=45.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHH--HH-HHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEF--TI-DLCSACLAGDDLRKGGELHHKTLRTGLH 556 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~--Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~ 556 (587)
-..+...|++++|...|+......-.|+.. .. .|-..+...|++++|...+.......+.
T Consensus 55 A~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~ 117 (145)
T PF09976_consen 55 AKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFK 117 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchH
Confidence 567889999999999999999877333322 33 5677788899999999999775444443
No 156
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=40.42 E-value=1.2e+02 Score=36.40 Aligned_cols=81 Identities=12% Similarity=0.095 Sum_probs=46.0
Q ss_pred HHHhcCCCCChhh--hHHHHHhHHhhc----------CcCHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HH
Q 007864 465 LFLDGIKRPDLVA--WSSLLSVHEEWA----------SRRVV-LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DL 530 (587)
Q Consensus 465 ~vFd~M~~pdvvT--yNsLI~gy~km~----------~~dvv-sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sL 530 (587)
.+.+.+.+.++.| |.-+-+-|+..+ +-+.. --|..|.++|++++|.++-+ .-.|-+.....| .-
T Consensus 753 ~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~--e~~~~e~t~~~yiak 830 (1636)
T KOG3616|consen 753 SILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAE--ECHGPEATISLYIAK 830 (1636)
T ss_pred hHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHH--HhcCchhHHHHHHHh
Confidence 4556565554443 455544444322 12222 55777888888888877754 334545555556 55
Q ss_pred HHHHhcCCCHHHHHHHH
Q 007864 531 CSACLAGDDLRKGGELH 547 (587)
Q Consensus 531 L~ac~~~G~l~~A~~l~ 547 (587)
..-.-+.|++.+|.+++
T Consensus 831 aedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 831 AEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHhHHhhcchhhhhhee
Confidence 55566667776666653
No 157
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=39.31 E-value=2.8e+02 Score=32.95 Aligned_cols=59 Identities=8% Similarity=0.097 Sum_probs=46.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-----------HH-HHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 007864 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEF-----------TI-DLCSACLAGDDLRKGGELHHKTLRTGL 555 (587)
Q Consensus 495 sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~-----------Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~ 555 (587)
++++-....|++.||+.+-+...+ +.||++ -| -.-.|+-++|+-.+|.++++++..+.+
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 678888999999999998876554 455554 35 566789999999999999999876544
No 158
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=38.18 E-value=84 Score=22.91 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=20.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFT 527 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~T 527 (587)
-..|.+.|++++|.++|++..+. .||...
T Consensus 8 a~~~~~~G~~~~A~~~~~~~l~~--~P~~~~ 36 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRALAL--DPDDPE 36 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CcCCHH
Confidence 66777888888888888877764 455543
No 159
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=37.67 E-value=3.3e+02 Score=28.81 Aligned_cols=71 Identities=10% Similarity=-0.018 Sum_probs=61.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLR-----TGLHHTEMKAVALGLI 568 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k-----~G~~pd~~vynaLIal 568 (587)
+..+...|+.+.+.+.+++....-- -|+.-| .++.+|.+.|+...|...++.+.+ .|+.|...+...+...
T Consensus 160 ae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 160 AEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 9999999999999999999987643 388889 999999999999999998887765 6999999888777643
No 160
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=36.61 E-value=2.5e+02 Score=29.13 Aligned_cols=65 Identities=9% Similarity=0.029 Sum_probs=45.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCH---HHHHHHH
Q 007864 500 FSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTE---MKAVALG 566 (587)
Q Consensus 500 y~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~---~vynaLI 566 (587)
|...++.+.|.++|+...+. +.-|..-| .-++-+.+.++.+.++.+|+..+.. +.++. .+|...+
T Consensus 46 ~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i 114 (280)
T PF05843_consen 46 YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFI 114 (280)
T ss_dssp HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHH
Confidence 34456777799999997765 33344445 7778888999999999999999876 33322 4788777
No 161
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=35.84 E-value=2e+02 Score=28.13 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=46.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANE----FTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~----~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
...|.+.|++++|...|++.... .|+. ..+ .+-.++-..|++++|...++.+++..
T Consensus 40 g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 40 AKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH 100 (235)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 78899999999999999998764 3442 356 77888899999999999999998753
No 162
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=35.32 E-value=1.1e+02 Score=36.24 Aligned_cols=56 Identities=4% Similarity=-0.145 Sum_probs=48.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI--DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty--sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
...+.+.+++++|+..+++... ..||..+. .+-.++.+.|+.++|..+|+++...+
T Consensus 127 a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~ 184 (694)
T PRK15179 127 LRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQH 184 (694)
T ss_pred HHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence 8889999999999999998876 46898888 55566778999999999999999844
No 163
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=34.51 E-value=1.2e+02 Score=27.70 Aligned_cols=53 Identities=17% Similarity=0.042 Sum_probs=41.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 496 VISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 496 LI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
=++.+.+.|++++|+.+.+.+ +.||...| .|... +.|..++...-+..|..+|
T Consensus 45 RlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 45 RLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 356789999999999998887 68999999 77654 6677666666666676666
No 164
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.12 E-value=52 Score=26.57 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 007864 495 LVISGFSLNGWYAEALGLFQTMRV 518 (587)
Q Consensus 495 sLI~gy~k~G~~~eAl~Lf~eM~~ 518 (587)
.+|.||.+.|++++|.++.+++..
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 569999999999999999998865
No 165
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=32.88 E-value=36 Score=36.27 Aligned_cols=86 Identities=9% Similarity=0.088 Sum_probs=66.1
Q ss_pred CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H--Hhccc-C-CCCCcchhh-hhcccCCChhHH
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R--VKKFV-E-KDAKNWSGP-GSYPSTKSFHTN 398 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r--Fd~M~-~-pd~vtYNsL-~gy~r~G~~eeA 398 (587)
+.+++++|...|.+.++.. +-|.+.|. -=-.+|++.|..+. + -..+. . .-..+|..| .+|.-.|++++|
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~-P~nAVyyc---NRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELD-PTNAVYYC---NRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HhhhHHHHHHHHHHHHhcC-CCcchHHH---HHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4678889999999888752 33566666 67788999998877 3 22222 2 345689999 999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH
Q 007864 399 RLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI 434 (587)
Q Consensus 399 l~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty 434 (587)
.+-|+.-.+- .||..+|
T Consensus 169 ~~aykKaLel-------------------dP~Ne~~ 185 (304)
T KOG0553|consen 169 IEAYKKALEL-------------------DPDNESY 185 (304)
T ss_pred HHHHHhhhcc-------------------CCCcHHH
Confidence 9999887755 8999999
No 166
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=32.87 E-value=2.5e+02 Score=29.42 Aligned_cols=68 Identities=10% Similarity=-0.023 Sum_probs=52.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaL 565 (587)
+....++|++.+|...|++-.. .-.+|..+| .+=-+|.+.|+.+.|+.-|.+..+.-..-..+.-|..
T Consensus 107 gk~~~~~g~~~~A~~~~rkA~~-l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlg 175 (257)
T COG5010 107 GKNQIRNGNFGEAVSVLRKAAR-LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLG 175 (257)
T ss_pred HHHHHHhcchHHHHHHHHHHhc-cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHH
Confidence 8888999999999999998765 335666777 7777788999999999999998885443333333433
No 167
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.77 E-value=6.4e+02 Score=26.93 Aligned_cols=72 Identities=13% Similarity=0.043 Sum_probs=48.4
Q ss_pred HHHhcCCC---CChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCH
Q 007864 465 LFLDGIKR---PDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDL 540 (587)
Q Consensus 465 ~vFd~M~~---pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l 540 (587)
-+|++|.+ |+..+-|-+ ...+...|++++|..++++-..+.-+ |..|. -++-.--..|.-
T Consensus 194 yifeE~s~k~~~T~~llnG~---------------Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 194 YIFEELSEKTPPTPLLLNGQ---------------AVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHHHhcccCCChHHHccH---------------HHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCC
Confidence 78999986 566666777 77888999999999999998876433 45566 555554455543
Q ss_pred -HHHHHHHHHHHH
Q 007864 541 -RKGGELHHKTLR 552 (587)
Q Consensus 541 -~~A~~l~~~M~k 552 (587)
+.-.+...++..
T Consensus 258 ~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 258 AEVTERNLSQLKL 270 (299)
T ss_pred hHHHHHHHHHHHh
Confidence 333334444443
No 168
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=32.47 E-value=63 Score=34.50 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred CCCCHHHH--HHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 007864 521 IEANEFTI--DLCSACLAGDDLRKGGELHHKTLRTGLH 556 (587)
Q Consensus 521 i~PD~~Ty--sLL~ac~~~G~l~~A~~l~~~M~k~G~~ 556 (587)
+.||..+| ..|..-.+.||+++|.++.++..+.|+.
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
No 169
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=32.15 E-value=7.3e+02 Score=27.42 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=27.0
Q ss_pred CCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 523 ANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 523 PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
.|..-+ +++.++.-.|+.++|.+..+.|.+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 455556 88999999999999999999999874
No 170
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=32.08 E-value=2.4e+02 Score=33.25 Aligned_cols=85 Identities=13% Similarity=-0.054 Sum_probs=54.2
Q ss_pred CCCCccchhhHHHHHHcCC-CCCCCCCCchhHHHHh------hhcCCcHHH--H-HhcccCC---CCCcchhh--hhccc
Q 007864 327 KDTPKQFSQAHVKAFLSKL-DSLPNFKGMPICLVNE------YGTSKNLAK--R-VKKFVEK---DAKNWSGP--GSYPS 391 (587)
Q Consensus 327 ~g~l~~A~~l~~~M~~~Gl-~pd~~tynipiaLI~~------y~k~G~l~e--r-Fd~M~~p---d~vtYNsL--~gy~r 391 (587)
.|....|..+.++..+.-. .|+...+. -.... ..+.|..++ + ... .++ |-+.|--. .-+.+
T Consensus 156 ~g~y~~A~~il~ef~~t~~~~~s~~~~e---~se~~Ly~n~i~~E~g~~q~ale~L~~-~e~~i~Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 156 LGEYKMALEILEEFEKTQNTSPSKEDYE---HSELLLYQNQILIEAGSLQKALEHLLD-NEKQIVDKLAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCHHHHH---HHHHHHHHHHHHHHcccHHHHHHHHHh-hhhHHHHHHHHhhhHHHHHHH
Confidence 5677778888887776652 45555544 32222 234555444 2 222 222 33344333 66778
Q ss_pred CCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH
Q 007864 392 TKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI 434 (587)
Q Consensus 392 ~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty 434 (587)
.|++++|..++.....+ .||..-|
T Consensus 232 l~~lEeA~~~y~~Ll~r-------------------nPdn~~Y 255 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLER-------------------NPDNLDY 255 (700)
T ss_pred HhhHHhHHHHHHHHHhh-------------------CchhHHH
Confidence 89999999999999999 8999988
No 171
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=32.01 E-value=38 Score=22.88 Aligned_cols=27 Identities=11% Similarity=0.103 Sum_probs=23.1
Q ss_pred cchhh-hhcccCCChhHHHHHHHHHhhc
Q 007864 382 NWSGP-GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 382 tYNsL-~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
+|..+ ..|...|++++|++.|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 57888 9999999999999999998765
No 172
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=31.68 E-value=8.5e+02 Score=28.02 Aligned_cols=69 Identities=14% Similarity=0.033 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANE-FTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 495 sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~-~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
.|=++|.-.++..=|+-.|++-.. ++|+. ..| .|=..|.+.+++++|.+.+...+..|=. +...+.-|.
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~La 473 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLA 473 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHH
Confidence 667788888888889988886554 67765 566 8888999999999999999999887622 334444444
No 173
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=31.37 E-value=3.6e+02 Score=28.97 Aligned_cols=94 Identities=11% Similarity=0.082 Sum_probs=63.2
Q ss_pred cccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH----HHHHHHH----HHHHHHHHhhCccHHHHHH
Q 007864 389 YPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI----ARLWAAR----RDVINGVVSIGEYVCVAEI 460 (587)
Q Consensus 389 y~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty----L~aca~~----~~lh~~m~k~~pd~~vyna 460 (587)
..+++++.+|+..|.+-.+- .|+..+| -.+|.+. ..|++.-.-+.-|..
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l-------------------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~---- 147 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL-------------------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH---- 147 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc-------------------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH----
Confidence 45789999999999998866 7777777 5555554 222221111222211
Q ss_pred HHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHh
Q 007864 461 LVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACL 535 (587)
Q Consensus 461 LI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~ 535 (587)
-.-+|..| =-+|...|++++|.+.|+.-.+ +.||-.+| +=|+.-.
T Consensus 148 -------------yskay~RL---------------G~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 148 -------------YSKAYGRL---------------GLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKIAE 193 (304)
T ss_pred -------------HHHHHHHH---------------HHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHHH
Confidence 23467777 7788889999999999886544 88999999 6666543
No 174
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=30.73 E-value=1.3e+02 Score=23.07 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=18.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHH
Q 007864 501 SLNGWYAEALGLFQTMRVDYIEANEFTI-DLCS 532 (587)
Q Consensus 501 ~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ 532 (587)
-+.|...++..++++|.+.|+.-+...| .++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3555566666666666666666555555 4443
No 175
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.44 E-value=4.7e+02 Score=30.68 Aligned_cols=28 Identities=7% Similarity=-0.025 Sum_probs=22.7
Q ss_pred CcchhhhhcccCCChhHHHHHHHHHhhc
Q 007864 381 KNWSGPGSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 381 vtYNsL~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
..|+.++-+.++|.+++|..........
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~ 41 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSI 41 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhc
Confidence 3466666778999999999999998855
No 176
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=30.08 E-value=43 Score=22.29 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=22.0
Q ss_pred cchhh-hhcccCCChhHHHHHHHHHhhc
Q 007864 382 NWSGP-GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 382 tYNsL-~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
.|..+ ..|.+.|++++|++.|++-.+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35667 8899999999999999998765
No 177
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.05 E-value=6.6e+02 Score=26.24 Aligned_cols=172 Identities=13% Similarity=-0.006 Sum_probs=111.6
Q ss_pred CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhc---ccCCCCCcchhh-hhcccCCChhHH
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKK---FVEKDAKNWSGP-GSYPSTKSFHTN 398 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~---M~~pd~vtYNsL-~gy~r~G~~eeA 398 (587)
..|+...|+.-+++.++.. +.+.-+|. .+-..|-+.|..+. + |+. |...|--.-|-- .=+|..|++++|
T Consensus 47 ~~gd~~~A~~nlekAL~~D-Ps~~~a~~---~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 47 QQGDYAQAKKNLEKALEHD-PSYYLAHL---VRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HCCCHHHHHHHHHHHHHhC-cccHHHHH---HHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 4677778888777777653 11223455 67777888888888 4 664 334566667777 778889999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH--HHHHHHH-------HHHHHHHHhhCccHHHHHHHHHHHHHhc
Q 007864 399 RLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI--ARLWAAR-------RDVINGVVSIGEYVCVAEILVMLLFLDG 469 (587)
Q Consensus 399 l~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty--L~aca~~-------~~lh~~m~k~~pd~~vynaLI~~~vFd~ 469 (587)
...|++-... -. |-.| ..|| +..|+-. +..+...++..|+
T Consensus 123 ~q~F~~Al~~---P~------------Y~~~-s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~--------------- 171 (250)
T COG3063 123 MQQFERALAD---PA------------YGEP-SDTLENLGLCALKAGQFDQAEEYLKRALELDPQ--------------- 171 (250)
T ss_pred HHHHHHHHhC---CC------------CCCc-chhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC---------------
Confidence 9999887765 22 1112 2344 5555542 2222222211111
Q ss_pred CCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHH
Q 007864 470 IKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHH 548 (587)
Q Consensus 470 M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~ 548 (587)
+..+.-.| -.-.-+.|++-.|..+++.-...|- ++..+. ..|.---..|+-+.+.+.-.
T Consensus 172 ----~~~~~l~~---------------a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~ 231 (250)
T COG3063 172 ----FPPALLEL---------------ARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQA 231 (250)
T ss_pred ----CChHHHHH---------------HHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 11122233 6667789999999999988877766 898888 88888888999988887766
Q ss_pred HHHH
Q 007864 549 KTLR 552 (587)
Q Consensus 549 ~M~k 552 (587)
.+.+
T Consensus 232 qL~r 235 (250)
T COG3063 232 QLQR 235 (250)
T ss_pred HHHH
Confidence 6655
No 178
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=29.13 E-value=26 Score=23.17 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=19.5
Q ss_pred hhcccCCChhHHHHHHHHHhhc
Q 007864 387 GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 387 ~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
..|.+.|+.++|.+.|++..+.
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 5677889999999999999887
No 179
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=28.35 E-value=2.3e+02 Score=30.12 Aligned_cols=62 Identities=10% Similarity=0.139 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHH-HHH--HHHhcCC----CHHHHHHHHHHHHHcCC---CCCHHHHHHHHH
Q 007864 506 YAEALGLFQTMRVDYIEANEFTI-DLC--SACLAGD----DLRKGGELHHKTLRTGL---HHTEMKAVALGL 567 (587)
Q Consensus 506 ~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL--~ac~~~G----~l~~A~~l~~~M~k~G~---~pd~~vynaLIa 567 (587)
+++.+.+++.|.+.|++-+.+|| +.. ....... ....++.+|+.|++.-. .++.+.+.+|++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA 149 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLA 149 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHh
Confidence 56677889999999999999999 533 3222222 35578999999998642 567778888874
No 180
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=28.11 E-value=58 Score=37.48 Aligned_cols=92 Identities=13% Similarity=-0.014 Sum_probs=64.9
Q ss_pred EEeccccCC-CCCCCCccchhhHHHHHHcCCCC-CCCCCCchhHHHHhhhcCCcHHH-H-Hhcc-c-CCCCCcchhh--h
Q 007864 316 FVVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDS-LPNFKGMPICLVNEYGTSKNLAK-R-VKKF-V-EKDAKNWSGP--G 387 (587)
Q Consensus 316 ~Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~p-d~~tynipiaLI~~y~k~G~l~e-r-Fd~M-~-~pd~vtYNsL--~ 387 (587)
.+|...++. -+...++.|+.+|.+..+.+..+ ++++++ ++|.-||.....-. + |+-- + -+|.-.|--- .
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~---A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA---ALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH---HHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 456667776 35677889999999999888777 888888 99998887766666 6 6642 2 2455444332 4
Q ss_pred hcccCCChhHHHHHHHHHhhcccCCC
Q 007864 388 SYPSTKSFHTNRLQAKRQLRRFISDV 413 (587)
Q Consensus 388 gy~r~G~~eeAl~Lf~eM~~~~~~Gv 413 (587)
-+..-++-+.|..||++.... ++
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s---~l 466 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTS---VL 466 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhc---cC
Confidence 455566667777788887777 66
No 181
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=27.49 E-value=2.2e+02 Score=27.68 Aligned_cols=56 Identities=13% Similarity=0.035 Sum_probs=46.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHH--HH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEF--TI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~--Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
-.-|++.|+.++|++.|.+|......+... .+ .+|..+...+++..+.....+...
T Consensus 43 ~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 43 ADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888999999999999999999876665553 45 888899999999998887666543
No 182
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=27.31 E-value=5.6e+02 Score=31.36 Aligned_cols=125 Identities=10% Similarity=-0.020 Sum_probs=74.5
Q ss_pred CCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH--HHHHHHHHHHHHHHHhhCccH
Q 007864 379 DAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI--ARLWAARRDVINGVVSIGEYV 455 (587)
Q Consensus 379 d~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty--L~aca~~~~lh~~m~k~~pd~ 455 (587)
++-.|--+ .+|-+.|++++|+++|...... .. .-+...| +.-|-+...=.+.. .
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~---~~--------------~~~~~vw~~~a~c~~~l~e~e~A------~ 469 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNR---EG--------------YQNAFVWYKLARCYMELGEYEEA------I 469 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcC---cc--------------ccchhhhHHHHHHHHHHhhHHHH------H
Confidence 45578888 9999999999999999999987 33 2334444 55555440000000 0
Q ss_pred HHHHHHHHHHHHhcCCCCC----hhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHH--------hcCCCC
Q 007864 456 CVAEILVMLLFLDGIKRPD----LVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMR--------VDYIEA 523 (587)
Q Consensus 456 ~vynaLI~~~vFd~M~~pd----vvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~--------~~Gi~P 523 (587)
..|+. +... .|| .++- =+-|-+.|+.++|++.+..|. ..+..|
T Consensus 470 e~y~k-----vl~~--~p~~~D~Ri~L------------------asl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~ 524 (895)
T KOG2076|consen 470 EFYEK-----VLIL--APDNLDARITL------------------ASLYQQLGNHEKALETLEQIINPDGRNAEACAWEP 524 (895)
T ss_pred HHHHH-----HHhc--CCCchhhhhhH------------------HHHHHhcCCHHHHHHHHhcccCCCccchhhccccH
Confidence 11111 1111 121 1233 344888999999999999865 234555
Q ss_pred CHHHH-HHHHHHhcCCCHHHHHHHHHHHH
Q 007864 524 NEFTI-DLCSACLAGDDLRKGGELHHKTL 551 (587)
Q Consensus 524 D~~Ty-sLL~ac~~~G~l~~A~~l~~~M~ 551 (587)
+...- -...-+...|+.++-..+-..|+
T Consensus 525 e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 525 ERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55555 66666777777776444444443
No 183
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=26.63 E-value=1.8e+02 Score=33.74 Aligned_cols=60 Identities=12% Similarity=0.241 Sum_probs=48.4
Q ss_pred ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHhcCCCHHHHHHHHHHH
Q 007864 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI--DLCSACLAGDDLRKGGELHHKT 550 (587)
Q Consensus 474 dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty--sLL~ac~~~G~l~~A~~l~~~M 550 (587)
|-..||-| =..++...+.+||..-|++-.+ ++|+.+-- -|--+|...|.+++|.+.+-..
T Consensus 463 d~~lWNRL---------------GAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 463 DYLLWNRL---------------GATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred hHHHHHHh---------------hHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 66789998 7778888999999999997665 78887644 7777888999999998866544
No 184
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.17 E-value=1e+03 Score=27.63 Aligned_cols=71 Identities=10% Similarity=0.124 Sum_probs=55.7
Q ss_pred HHHhc-CC-CCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHH
Q 007864 465 LFLDG-IK-RPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLR 541 (587)
Q Consensus 465 ~vFd~-M~-~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~ 541 (587)
.+|+. |. +||.-.|++- |.-=.+...++.|..+|++-.- +.|++.+| --..-=-+.|.+.
T Consensus 162 qiferW~~w~P~eqaW~sf---------------I~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 162 QIFERWMEWEPDEQAWLSF---------------IKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHHHcCCCcHHHHHHH---------------HHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHH
Confidence 67765 33 6999999999 8888888888888888887665 45888888 7666667788888
Q ss_pred HHHHHHHHHHH
Q 007864 542 KGGELHHKTLR 552 (587)
Q Consensus 542 ~A~~l~~~M~k 552 (587)
.++.++...++
T Consensus 225 ~aR~VyerAie 235 (677)
T KOG1915|consen 225 LARSVYERAIE 235 (677)
T ss_pred HHHHHHHHHHH
Confidence 88888887765
No 185
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=25.83 E-value=4.4e+02 Score=25.65 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=11.9
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 007864 500 FSLNGWYAEALGLFQTMRVD 519 (587)
Q Consensus 500 y~k~G~~~eAl~Lf~eM~~~ 519 (587)
+.+.|++.+|..+|+++.+.
T Consensus 54 ~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHhCCHHHHHHHHHHHhcc
Confidence 35566666666666665543
No 186
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=25.39 E-value=1.7e+02 Score=22.34 Aligned_cols=40 Identities=8% Similarity=0.001 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 527 TIDLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 527 TysLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
|..+|...-+.|.+.+++.+++.|.+.|+.-+...+..++
T Consensus 5 TlGiL~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 5 TLGILLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred hHHHHHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3423444456888899999999999999999998888765
No 187
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=25.33 E-value=1.5e+02 Score=25.96 Aligned_cols=71 Identities=11% Similarity=0.072 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTIDLCSACLAGDD--LRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 495 sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~TysLL~ac~~~G~--l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
.+|..|..+|+.+||..-++++......+ .+.+.++..+...++ -+..-.++..+.+.|.-+....-.++-
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~~~~~~~-~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~ 79 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELKLPSQHH-EVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFE 79 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT-GGGHH-HHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHhCCCccHH-HHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45889999999999999999986553332 233355555555533 344667888888888877666666654
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=25.22 E-value=4.3e+02 Score=30.24 Aligned_cols=64 Identities=11% Similarity=-0.116 Sum_probs=50.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC-CCCCHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG-LHHTEMKA 562 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G-~~pd~~vy 562 (587)
--.+...|++++|...|++..+.. |+...| .+-..+...|+.++|.+.+....+.. ..|.-+.+
T Consensus 427 a~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~ 492 (517)
T PRK10153 427 AVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWI 492 (517)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHH
Confidence 334456799999999999988755 788889 88999999999999999999887643 34444443
No 189
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=24.45 E-value=9.1e+02 Score=27.50 Aligned_cols=77 Identities=6% Similarity=-0.073 Sum_probs=48.4
Q ss_pred CCccchhhHHHHHH-cCCCCCCCCCCchhHHHHhhhcCCcHHH--H-HhcccCCCCCcchhh--h--hcccCCChhHHHH
Q 007864 329 TPKQFSQAHVKAFL-SKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFVEKDAKNWSGP--G--SYPSTKSFHTNRL 400 (587)
Q Consensus 329 ~l~~A~~l~~~M~~-~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~~pd~vtYNsL--~--gy~r~G~~eeAl~ 400 (587)
+-..+.+.+-.+.. .-++-|+.... ++-+.|...|+-++ . |++...-|..+-.+| - -+.+.|+.++-..
T Consensus 211 ~hs~a~~t~l~le~~~~lr~NvhLl~---~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 211 KHSDASQTFLMLHDNTTLRCNEHLMM---ALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred ccchhhhHHHHHHhhccCCccHHHHH---HHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHH
Confidence 33344444444433 34566677777 88888888888888 4 887665555555555 2 2357788888777
Q ss_pred HHHHHhhc
Q 007864 401 QAKRQLRR 408 (587)
Q Consensus 401 Lf~eM~~~ 408 (587)
+.......
T Consensus 288 L~~~Lf~~ 295 (564)
T KOG1174|consen 288 LMDYLFAK 295 (564)
T ss_pred HHHHHHhh
Confidence 76666543
No 190
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=24.32 E-value=4.3e+02 Score=29.16 Aligned_cols=26 Identities=15% Similarity=0.064 Sum_probs=13.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHH
Q 007864 503 NGWYAEALGLFQTMRVDYIEANEFTI 528 (587)
Q Consensus 503 ~G~~~eAl~Lf~eM~~~Gi~PD~~Ty 528 (587)
.|+-++|++++..+....-.++.-||
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHH
Confidence 45555566555554444444444455
No 191
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=24.29 E-value=3.9e+02 Score=24.26 Aligned_cols=59 Identities=10% Similarity=-0.073 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHH
Q 007864 506 YAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTL-RTGLHHTEMKAVALG 566 (587)
Q Consensus 506 ~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~-k~G~~pd~~vynaLI 566 (587)
.-++.+-++.+....+.|+.... +.|+||-+..|+..|..+++-++ |.|- +...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 34555566666667788888888 88888888888888888888665 4443 344666665
No 192
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=24.15 E-value=2.4e+02 Score=30.08 Aligned_cols=82 Identities=7% Similarity=0.050 Sum_probs=57.0
Q ss_pred hHHhhcCcCHH-HHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHH-HHHHHHhcCCCHHHHHHHHH-----HHHHcCC
Q 007864 484 VHEEWASRRVV-LVISGFSLNGWYAEALGLFQTMRVD-YIEANEFTI-DLCSACLAGDDLRKGGELHH-----KTLRTGL 555 (587)
Q Consensus 484 gy~km~~~dvv-sLI~gy~k~G~~~eAl~Lf~eM~~~-Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~-----~M~k~G~ 555 (587)
.+++...++++ ++|..+++.+++.+-+++.+.-... +..-|..-| .+|+.-.+.|+..-.+.+.. .+.+.|+
T Consensus 195 t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V 274 (292)
T PF13929_consen 195 TFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNV 274 (292)
T ss_pred ccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCC
Confidence 33444556666 7899999999999988887766554 667788899 99999999999766555543 2334455
Q ss_pred CCCHHHHHHH
Q 007864 556 HHTEMKAVAL 565 (587)
Q Consensus 556 ~pd~~vynaL 565 (587)
..+.....+|
T Consensus 275 ~v~~~L~~~L 284 (292)
T PF13929_consen 275 DVTDELRSQL 284 (292)
T ss_pred cCCHHHHHHH
Confidence 5555554444
No 193
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=23.38 E-value=39 Score=30.66 Aligned_cols=84 Identities=8% Similarity=0.066 Sum_probs=61.7
Q ss_pred cccCCC-CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--HHhcccCCCCCcchhh-hhcccCCCh
Q 007864 320 FPVGSP-EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--RVKKFVEKDAKNWSGP-GSYPSTKSF 395 (587)
Q Consensus 320 sLL~ac-~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--rFd~M~~pd~vtYNsL-~gy~r~G~~ 395 (587)
.+|+.. +.+.++...+....+.+.+-..+....+ .|+..|++.++.++ +|=+ ..+.+-...+ .-+-+.|.+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~---~L~~ly~~~~~~~~l~~~L~--~~~~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHT---LLLELYIKYDPYEKLLEFLK--TSNNYDLDKALRLCEKHGLY 86 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHH---HHHHHHHCTTTCCHHHHTTT--SSSSS-CTHHHHHHHTTTSH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHH---HHHHHHHhcCCchHHHHHcc--cccccCHHHHHHHHHhcchH
Confidence 344443 4678889999999999877666778889 99999999988776 3333 3333555667 888899999
Q ss_pred hHHHHHHHHHhhc
Q 007864 396 HTNRLQAKRQLRR 408 (587)
Q Consensus 396 eeAl~Lf~eM~~~ 408 (587)
++|.-++.+|...
T Consensus 87 ~~a~~Ly~~~~~~ 99 (143)
T PF00637_consen 87 EEAVYLYSKLGNH 99 (143)
T ss_dssp HHHHHHHHCCTTH
T ss_pred HHHHHHHHHcccH
Confidence 9999999988654
No 194
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=22.49 E-value=39 Score=18.07 Aligned_cols=8 Identities=63% Similarity=1.281 Sum_probs=6.5
Q ss_pred CcccccCc
Q 007864 57 PLMGLHGY 64 (587)
Q Consensus 57 ~~~~~~~~ 64 (587)
|-||.||.
T Consensus 2 psmgf~g~ 9 (10)
T PF08262_consen 2 PSMGFHGM 9 (10)
T ss_pred Cccccccc
Confidence 77999984
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.39 E-value=3.3e+02 Score=28.23 Aligned_cols=55 Identities=9% Similarity=-0.027 Sum_probs=44.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANE----FTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~----~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
+.-+.+.|++++|...|+..... .||. ..+ .+-..+...|++++|...|..+++.
T Consensus 150 ~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~ 209 (263)
T PRK10803 150 IALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN 209 (263)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55456789999999999999875 3554 345 7888888999999999999999864
No 196
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=22.13 E-value=26 Score=24.67 Aligned_cols=23 Identities=9% Similarity=0.219 Sum_probs=20.0
Q ss_pred CCCCcchhh-hhcccCCChhHHHH
Q 007864 378 KDAKNWSGP-GSYPSTKSFHTNRL 400 (587)
Q Consensus 378 pd~vtYNsL-~gy~r~G~~eeAl~ 400 (587)
.|...|+-+ ..|.+.|+.++|++
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhcC
Confidence 477899999 99999999999863
No 197
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=22.02 E-value=5e+02 Score=28.55 Aligned_cols=73 Identities=15% Similarity=0.142 Sum_probs=54.6
Q ss_pred hcCcCHH-HHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCHHHH---HHHHHHhcCCCHHHHHHHHHHHHH-----cCC
Q 007864 488 WASRRVV-LVISGFSLNGWYAEALGLFQTMRVD---YIEANEFTI---DLCSACLAGDDLRKGGELHHKTLR-----TGL 555 (587)
Q Consensus 488 m~~~dvv-sLI~gy~k~G~~~eAl~Lf~eM~~~---Gi~PD~~Ty---sLL~ac~~~G~l~~A~~l~~~M~k-----~G~ 555 (587)
+....+| .++...-+.++.++|++.++++.+. --.||.+.| .+...+...||+.+++++.++..+ .|+
T Consensus 72 INplslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v 151 (380)
T KOG2908|consen 72 INPLSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGV 151 (380)
T ss_pred cChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCC
Confidence 3334444 5566667777999999999999864 456889988 344455678999999999998887 677
Q ss_pred CCCHH
Q 007864 556 HHTEM 560 (587)
Q Consensus 556 ~pd~~ 560 (587)
.+++.
T Consensus 152 ~~~Vh 156 (380)
T KOG2908|consen 152 TSNVH 156 (380)
T ss_pred Chhhh
Confidence 77544
No 198
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.72 E-value=1.9e+02 Score=31.47 Aligned_cols=54 Identities=13% Similarity=0.049 Sum_probs=47.1
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 007864 502 LNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555 (587)
Q Consensus 502 k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~ 555 (587)
-.=+.++++.++..=..-|+.||.+|+ .+|+.+.+.++...|.++...|+....
T Consensus 112 lky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 112 LKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred HccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 334788999999999999999999999 999999999999999998887776543
No 199
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.66 E-value=7.7e+02 Score=28.54 Aligned_cols=78 Identities=6% Similarity=-0.034 Sum_probs=42.3
Q ss_pred CCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-HhcccC---CCCCcchhh-hhcccCCChhHHH
Q 007864 327 KDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFVE---KDAKNWSGP-GSYPSTKSFHTNR 399 (587)
Q Consensus 327 ~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~~---pd~vtYNsL-~gy~r~G~~eeAl 399 (587)
.|+...+.+-++..++..-.++. .|- -+-.+|....+.++ + |+.-.+ -|.-+|--= ..+.-.+++++|.
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI---~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYI---KRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHH---HHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 56666677777766655432221 132 34445666666555 5 665432 244445444 4444455677777
Q ss_pred HHHHHHhhc
Q 007864 400 LQAKRQLRR 408 (587)
Q Consensus 400 ~Lf~eM~~~ 408 (587)
.=|++-.+-
T Consensus 415 aDF~Kai~L 423 (606)
T KOG0547|consen 415 ADFQKAISL 423 (606)
T ss_pred HHHHHHhhc
Confidence 777766544
No 200
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=21.62 E-value=3.1e+02 Score=27.94 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=44.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFT---IDLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~T---ysLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
-..+.+.|++++|.+.|++....--.+.... +.+..++-+.++.++|...++..++.-
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 4456788999999999999988543333332 145577788999999999999988753
No 201
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=21.53 E-value=2.3e+02 Score=32.85 Aligned_cols=127 Identities=13% Similarity=0.079 Sum_probs=79.7
Q ss_pred CCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc----CC-C-----CCcchhh-hhcccC
Q 007864 327 KDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV----EK-D-----AKNWSGP-GSYPST 392 (587)
Q Consensus 327 ~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~----~p-d-----~vtYNsL-~gy~r~ 392 (587)
.++.+.|.+.|.+...- .+.|+.+.+ -+=-..-+.+.+.+ + |..-. .- + .-++|-| ..|.+.
T Consensus 393 t~n~kLAe~Ff~~A~ai-~P~Dplv~~---Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAI-APSDPLVLH---ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred hccHHHHHHHHHHHHhc-CCCcchhhh---hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 56677777777766432 344555555 33222333444444 3 54322 11 1 1247777 888888
Q ss_pred CChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCCC
Q 007864 393 KSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKR 472 (587)
Q Consensus 393 G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~~ 472 (587)
+..++|+..|+.-... . .
T Consensus 469 ~~~~eAI~~~q~aL~l-------------------~-------------------------------------------~ 486 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLL-------------------S-------------------------------------------P 486 (611)
T ss_pred hhHHHHHHHHHHHHHc-------------------C-------------------------------------------C
Confidence 8888888888766554 2 2
Q ss_pred CChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhc
Q 007864 473 PDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLA 536 (587)
Q Consensus 473 pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~ 536 (587)
.|.-+|+++ =--|...|.++.|.+.|.+ .-+++||..+. .+|+-+..
T Consensus 487 k~~~~~asi---------------g~iy~llgnld~Aid~fhK--aL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 487 KDASTHASI---------------GYIYHLLGNLDKAIDHFHK--ALALKPDNIFISELLKLAIE 534 (611)
T ss_pred CchhHHHHH---------------HHHHHHhcChHHHHHHHHH--HHhcCCccHHHHHHHHHHHH
Confidence 344556666 4446778999999999985 45689999988 88875543
No 202
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=21.42 E-value=3e+02 Score=26.30 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=41.6
Q ss_pred HHhcCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 007864 500 FSLNGWYAEALGLFQTMRVD---YIEANEFTIDLCSACLAGDDLRKGGELHHKTLRTGL 555 (587)
Q Consensus 500 y~k~G~~~eAl~Lf~eM~~~---Gi~PD~~TysLL~ac~~~G~l~~A~~l~~~M~k~G~ 555 (587)
..+.|++++|.+.|+++..+ |-.....-+.|+.++-+.+++++|...++..++..=
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 45778999999999988875 322222222888889999999999998888887643
No 203
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=21.31 E-value=4.2e+02 Score=23.12 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCCC
Q 007864 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTIDLCSACLAGD--DLRKGGELHHKTLRTGLHH 557 (587)
Q Consensus 495 sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~TysLL~ac~~~G--~l~~A~~l~~~M~k~G~~p 557 (587)
.+|..|...|+++||.+-+.++......++.+. .+|..+...+ .-+....++..+.+.|...
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~-~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~ 70 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVK-VLLTCALEEKRTYREMYSVLLSRLCQANVIS 70 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHH-HHHHHHHcCCccHHHHHHHHHHHHHHcCCcC
Confidence 458899999999999999999876544444333 4555555553 3444566777887776543
No 204
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=20.74 E-value=3.2e+02 Score=26.67 Aligned_cols=57 Identities=18% Similarity=0.135 Sum_probs=41.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-CC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIE-AN-EFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~-PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
-..+.+.|++++|.+.|+++...--. |- .... .+..++-+.|+.++|...++..++.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34567899999999999999875211 11 1233 7888899999999999999988764
Done!