Query 007864
Match_columns 587
No_of_seqs 412 out of 2313
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 12:23:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 99.9 2.2E-27 7.4E-32 260.6 9.7 172 317-567 28-218 (501)
2 4g26_A Pentatricopeptide repea 99.9 5.2E-24 1.8E-28 233.8 7.7 167 292-537 38-223 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.7 7.1E-18 2.4E-22 196.1 8.3 113 381-566 128-243 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.6 2.5E-17 8.5E-22 191.6 2.0 126 349-558 127-265 (1134)
5 2xpi_A Anaphase-promoting comp 99.5 2E-13 7E-18 146.8 13.1 215 313-566 303-557 (597)
6 2xpi_A Anaphase-promoting comp 99.4 2.9E-13 9.8E-18 145.6 10.1 212 315-566 272-523 (597)
7 1w3b_A UDP-N-acetylglucosamine 98.5 1.5E-06 5.2E-11 88.4 14.8 231 294-552 81-367 (388)
8 1w3b_A UDP-N-acetylglucosamine 98.4 1.5E-06 5.3E-11 88.4 12.6 231 311-567 63-347 (388)
9 2y4t_A DNAJ homolog subfamily 98.4 3.5E-06 1.2E-10 86.8 15.0 224 318-567 29-337 (450)
10 2y4t_A DNAJ homolog subfamily 98.4 2.9E-06 9.9E-11 87.4 13.6 244 295-566 41-370 (450)
11 1b89_A Protein (clathrin heavy 98.3 1.1E-06 3.6E-11 95.5 8.3 197 295-566 47-248 (449)
12 3uq3_A Heat shock protein STI1 98.1 3.7E-05 1.3E-09 72.1 13.8 187 326-553 17-236 (258)
13 4eqf_A PEX5-related protein; a 98.1 1.9E-05 6.6E-10 79.3 11.6 188 326-553 77-310 (365)
14 3mkr_A Coatomer subunit epsilo 98.0 2.2E-05 7.4E-10 79.0 10.1 188 311-554 61-265 (291)
15 3cv0_A Peroxisome targeting si 97.9 9.8E-05 3.3E-09 71.7 12.6 190 326-554 33-270 (327)
16 3hym_B Cell division cycle pro 97.8 0.00022 7.4E-09 69.4 13.9 190 326-553 34-265 (330)
17 1fch_A Peroxisomal targeting s 97.8 0.00031 1.1E-08 69.9 15.4 204 326-553 76-314 (368)
18 2ho1_A Type 4 fimbrial biogene 97.8 0.00037 1.3E-08 65.7 15.0 176 326-554 49-239 (252)
19 1b89_A Protein (clathrin heavy 97.8 1.5E-05 5.2E-10 86.5 5.3 46 497-548 155-201 (449)
20 3mkr_A Coatomer subunit epsilo 97.7 0.00055 1.9E-08 68.6 14.7 179 357-567 39-242 (291)
21 2q7f_A YRRB protein; TPR, prot 97.6 0.00056 1.9E-08 63.6 12.5 183 314-554 22-223 (243)
22 2vq2_A PILW, putative fimbrial 97.6 0.00091 3.1E-08 61.1 13.6 176 326-553 20-211 (225)
23 3hym_B Cell division cycle pro 97.6 0.0015 5E-08 63.4 15.3 75 474-566 235-311 (330)
24 2fo7_A Synthetic consensus TPR 97.5 0.00058 2E-08 56.5 10.2 65 474-554 68-133 (136)
25 2gw1_A Mitochondrial precursor 97.5 0.00046 1.6E-08 71.7 11.0 77 293-375 19-99 (514)
26 3cv0_A Peroxisome targeting si 97.4 0.00067 2.3E-08 65.8 10.9 215 296-550 37-312 (327)
27 4eqf_A PEX5-related protein; a 97.4 0.0023 7.7E-08 64.1 14.5 174 357-566 70-288 (365)
28 1fch_A Peroxisomal targeting s 97.3 0.0019 6.6E-08 64.1 13.1 198 327-566 38-292 (368)
29 2gw1_A Mitochondrial precursor 97.3 0.002 6.9E-08 66.8 12.9 209 293-554 250-479 (514)
30 3as5_A MAMA; tetratricopeptide 97.3 0.01 3.4E-07 52.0 15.7 146 357-553 13-173 (186)
31 1xnf_A Lipoprotein NLPI; TPR, 97.2 0.00097 3.3E-08 63.2 9.2 177 326-554 55-245 (275)
32 2pl2_A Hypothetical conserved 97.2 0.004 1.4E-07 58.9 13.1 157 357-566 10-192 (217)
33 3vtx_A MAMA; tetratricopeptide 97.1 0.012 4.1E-07 52.9 15.3 55 497-553 114-170 (184)
34 2vq2_A PILW, putative fimbrial 97.1 0.0049 1.7E-07 56.1 12.8 163 357-566 13-189 (225)
35 3ieg_A DNAJ homolog subfamily 97.1 0.0098 3.3E-07 58.0 15.6 79 326-408 15-100 (359)
36 1xnf_A Lipoprotein NLPI; TPR, 97.0 0.002 7E-08 60.9 9.3 195 293-547 56-269 (275)
37 2fo7_A Synthetic consensus TPR 97.0 0.013 4.3E-07 48.2 12.6 106 382-566 3-110 (136)
38 2ho1_A Type 4 fimbrial biogene 96.9 0.033 1.1E-06 52.2 16.5 151 380-566 37-216 (252)
39 3nf1_A KLC 1, kinesin light ch 96.9 0.00092 3.2E-08 64.3 5.6 191 326-552 39-306 (311)
40 3fp2_A TPR repeat-containing p 96.9 0.026 8.8E-07 59.0 16.8 56 497-554 317-374 (537)
41 3uq3_A Heat shock protein STI1 96.8 0.05 1.7E-06 50.4 17.1 178 357-566 10-214 (258)
42 3u4t_A TPR repeat-containing p 96.8 0.0093 3.2E-07 56.5 12.0 173 326-554 15-209 (272)
43 1na0_A Designed protein CTPR3; 96.7 0.017 5.8E-07 47.1 11.5 97 380-554 9-107 (125)
44 2ond_A Cleavage stimulation fa 96.7 0.014 4.7E-07 58.0 12.9 173 331-554 81-271 (308)
45 3ieg_A DNAJ homolog subfamily 96.6 0.034 1.2E-06 54.1 14.7 163 357-554 8-218 (359)
46 2q7f_A YRRB protein; TPR, prot 96.6 0.015 5.1E-07 53.8 11.5 163 349-566 23-200 (243)
47 3edt_B KLC 2, kinesin light ch 96.6 0.0028 9.5E-08 59.7 6.4 191 326-553 13-281 (283)
48 3fp2_A TPR repeat-containing p 96.6 0.0076 2.6E-07 63.1 10.3 56 497-553 351-407 (537)
49 2pl2_A Hypothetical conserved 96.5 0.0093 3.2E-07 56.3 9.4 172 326-551 17-212 (217)
50 2kck_A TPR repeat; tetratricop 96.5 0.05 1.7E-06 43.5 12.4 98 378-554 4-107 (112)
51 1hh8_A P67PHOX, NCF-2, neutrop 96.4 0.025 8.7E-07 51.7 11.6 121 358-555 12-152 (213)
52 2r5s_A Uncharacterized protein 96.2 0.051 1.7E-06 49.1 12.1 149 357-552 11-172 (176)
53 4abn_A Tetratricopeptide repea 96.1 0.0062 2.1E-07 65.2 6.7 147 325-554 113-288 (474)
54 3u4t_A TPR repeat-containing p 96.1 0.029 9.8E-07 53.1 10.3 200 295-554 18-251 (272)
55 3as5_A MAMA; tetratricopeptide 95.8 0.16 5.4E-06 44.1 13.1 134 381-566 9-151 (186)
56 4gyw_A UDP-N-acetylglucosamine 95.8 0.051 1.7E-06 62.1 12.3 144 357-552 14-173 (723)
57 2vsy_A XCC0866; transferase, g 95.4 0.048 1.6E-06 59.0 10.2 56 497-554 98-158 (568)
58 1elr_A TPR2A-domain of HOP; HO 95.4 0.16 5.5E-06 41.6 11.2 68 497-566 45-119 (131)
59 2lni_A Stress-induced-phosphop 95.4 0.13 4.6E-06 42.4 10.6 97 379-554 15-114 (133)
60 4i17_A Hypothetical protein; T 95.3 0.04 1.4E-06 51.3 7.9 55 497-553 124-209 (228)
61 3nf1_A KLC 1, kinesin light ch 95.2 0.069 2.4E-06 50.9 9.5 164 357-553 32-224 (311)
62 3q49_B STIP1 homology and U bo 95.2 0.18 6.3E-06 42.4 11.1 97 378-553 7-106 (137)
63 2ooe_A Cleavage stimulation fa 95.1 0.19 6.4E-06 53.7 13.3 183 332-552 256-491 (530)
64 1elw_A TPR1-domain of HOP; HOP 95.0 0.27 9.1E-06 39.4 11.1 56 497-554 45-102 (118)
65 3gyz_A Chaperone protein IPGC; 94.9 0.19 6.4E-06 45.6 10.9 97 379-554 35-134 (151)
66 2h6f_A Protein farnesyltransfe 94.8 0.098 3.4E-06 54.9 10.1 61 474-552 273-347 (382)
67 4gco_A Protein STI-1; structur 94.8 0.28 9.7E-06 42.3 11.5 94 381-553 14-110 (126)
68 1ouv_A Conserved hypothetical 94.7 0.25 8.6E-06 47.2 11.9 181 327-566 19-225 (273)
69 2ond_A Cleavage stimulation fa 94.7 0.38 1.3E-05 47.5 13.5 180 331-566 33-248 (308)
70 2vyi_A SGTA protein; chaperone 94.7 0.38 1.3E-05 39.1 11.4 66 497-565 53-120 (131)
71 3vtx_A MAMA; tetratricopeptide 94.5 0.16 5.5E-06 45.3 9.3 38 474-528 140-177 (184)
72 3upv_A Heat shock protein STI1 94.4 0.45 1.5E-05 39.8 11.5 55 497-553 45-101 (126)
73 1ouv_A Conserved hypothetical 94.3 0.21 7.2E-06 47.7 10.3 173 327-554 55-252 (273)
74 3sz7_A HSC70 cochaperone (SGT) 94.3 0.39 1.3E-05 42.4 11.4 96 380-554 11-109 (164)
75 4gyw_A UDP-N-acetylglucosamine 94.2 0.51 1.7E-05 53.9 14.7 134 379-566 8-152 (723)
76 1iv0_A Hypothetical protein; r 94.2 0.11 3.8E-06 44.7 7.1 76 265-343 1-84 (98)
77 2vgx_A Chaperone SYCD; alterna 94.1 0.42 1.4E-05 42.4 11.2 96 379-553 20-118 (148)
78 2dba_A Smooth muscle cell asso 94.1 0.42 1.4E-05 40.2 10.8 101 378-554 26-129 (148)
79 2xcb_A PCRH, regulatory protei 94.0 0.46 1.6E-05 41.1 11.1 95 380-553 18-115 (142)
80 3edt_B KLC 2, kinesin light ch 94.0 0.25 8.5E-06 46.0 9.9 141 379-553 42-198 (283)
81 4gcn_A Protein STI-1; structur 94.0 0.42 1.4E-05 41.1 10.6 106 381-565 9-122 (127)
82 3ro2_A PINS homolog, G-protein 94.0 0.15 5.1E-06 48.5 8.4 78 326-408 17-112 (338)
83 4a1s_A PINS, partner of inscut 93.9 0.074 2.5E-06 53.7 6.3 78 326-408 60-155 (411)
84 3sf4_A G-protein-signaling mod 93.7 0.28 9.6E-06 48.6 10.1 78 326-408 21-116 (406)
85 2yhc_A BAMD, UPF0169 lipoprote 93.7 0.51 1.8E-05 44.2 11.5 162 327-555 17-215 (225)
86 1a17_A Serine/threonine protei 93.6 0.4 1.4E-05 41.3 9.8 55 497-551 88-144 (166)
87 1a17_A Serine/threonine protei 93.6 0.72 2.5E-05 39.6 11.4 57 497-554 54-111 (166)
88 3qou_A Protein YBBN; thioredox 93.5 0.58 2E-05 46.1 12.1 148 357-551 122-282 (287)
89 2xev_A YBGF; tetratricopeptide 92.8 1.2 4.2E-05 36.7 11.4 56 497-554 46-106 (129)
90 2e2e_A Formate-dependent nitri 92.3 0.52 1.8E-05 41.8 8.9 56 497-554 85-145 (177)
91 4i17_A Hypothetical protein; T 92.1 1.9 6.4E-05 39.7 12.8 128 379-558 6-149 (228)
92 1na0_A Designed protein CTPR3; 92.0 1.6 5.4E-05 34.9 10.8 68 497-566 16-84 (125)
93 3mv2_B Coatomer subunit epsilo 91.7 2.6 8.7E-05 43.4 14.3 150 357-554 105-283 (310)
94 2h6f_A Protein farnesyltransfe 91.5 3.3 0.00011 43.1 15.2 184 326-566 109-316 (382)
95 4ga2_A E3 SUMO-protein ligase 91.3 0.55 1.9E-05 41.5 7.8 64 497-564 72-139 (150)
96 1hxi_A PEX5, peroxisome target 91.0 0.73 2.5E-05 39.2 8.0 55 497-553 58-114 (121)
97 2e2e_A Formate-dependent nitri 91.0 0.35 1.2E-05 43.0 6.2 34 497-532 122-156 (177)
98 1qqe_A Vesicular transport pro 90.9 0.13 4.5E-06 50.6 3.6 56 497-552 165-227 (292)
99 3ma5_A Tetratricopeptide repea 90.7 1.3 4.3E-05 36.2 8.9 55 497-553 14-70 (100)
100 4gco_A Protein STI-1; structur 90.4 0.97 3.3E-05 38.8 8.3 90 360-528 21-117 (126)
101 3gw4_A Uncharacterized protein 90.4 2.2 7.6E-05 37.8 11.1 57 497-553 114-176 (203)
102 2pzi_A Probable serine/threoni 90.4 0.19 6.6E-06 56.3 4.7 181 325-554 402-603 (681)
103 1xi4_A Clathrin heavy chain; a 90.3 0.38 1.3E-05 58.9 7.4 63 497-565 1257-1320(1630)
104 3qky_A Outer membrane assembly 90.3 1.3 4.3E-05 42.1 9.8 158 357-554 20-225 (261)
105 4g1t_A Interferon-induced prot 89.9 2.4 8.4E-05 43.3 12.3 188 327-553 188-401 (472)
106 2vsy_A XCC0866; transferase, g 89.9 1.2 4.2E-05 47.8 10.4 67 497-566 64-132 (568)
107 2c2l_A CHIP, carboxy terminus 89.9 1.4 4.9E-05 43.1 10.1 29 380-408 4-33 (281)
108 4abn_A Tetratricopeptide repea 89.8 0.91 3.1E-05 48.3 9.2 109 378-566 100-220 (474)
109 1p5q_A FKBP52, FK506-binding p 89.8 1.2 4.1E-05 45.0 9.7 116 357-551 152-292 (336)
110 1xi4_A Clathrin heavy chain; a 89.5 1.3 4.5E-05 54.3 11.0 45 497-547 1228-1273(1630)
111 3ulq_A Response regulator aspa 89.4 0.77 2.6E-05 46.3 7.9 80 326-408 115-213 (383)
112 3ro2_A PINS homolog, G-protein 89.2 0.17 5.8E-06 48.2 2.6 57 497-553 270-332 (338)
113 2kck_A TPR repeat; tetratricop 88.4 2.8 9.6E-05 32.8 9.2 69 497-566 13-83 (112)
114 3u3w_A Transcriptional activat 88.2 0.83 2.8E-05 44.5 6.9 56 497-552 203-265 (293)
115 4g1t_A Interferon-induced prot 87.6 6.1 0.00021 40.3 13.4 88 318-408 54-167 (472)
116 1hh8_A P67PHOX, NCF-2, neutrop 87.5 3.5 0.00012 37.2 10.3 74 465-554 27-101 (213)
117 1wao_1 Serine/threonine protei 87.5 2.8 9.6E-05 44.8 11.1 29 380-408 6-35 (477)
118 3ro3_A PINS homolog, G-protein 87.5 2.2 7.5E-05 35.6 8.3 56 497-552 96-157 (164)
119 3u3w_A Transcriptional activat 87.4 3.6 0.00012 39.9 11.0 56 497-552 162-224 (293)
120 1p5q_A FKBP52, FK506-binding p 87.1 3 0.0001 42.1 10.5 120 379-566 146-271 (336)
121 2qfc_A PLCR protein; TPR, HTH, 86.8 3.4 0.00011 40.1 10.4 153 326-551 87-264 (293)
122 3ulq_A Response regulator aspa 86.7 1.5 5.2E-05 44.1 8.0 180 326-552 155-367 (383)
123 2fbn_A 70 kDa peptidylprolyl i 86.6 5.2 0.00018 36.1 11.0 123 379-566 37-163 (198)
124 4f3v_A ESX-1 secretion system 86.4 3.8 0.00013 41.5 10.7 68 497-566 178-248 (282)
125 2ooe_A Cleavage stimulation fa 85.7 1.8 6.3E-05 45.9 8.5 156 327-519 292-492 (530)
126 3urz_A Uncharacterized protein 85.6 0.77 2.6E-05 42.6 4.8 77 327-408 17-117 (208)
127 2dba_A Smooth muscle cell asso 85.0 5.3 0.00018 33.1 9.5 66 497-565 35-105 (148)
128 1na3_A Designed protein CTPR2; 84.7 4.8 0.00017 30.7 8.5 66 497-565 16-83 (91)
129 2kat_A Uncharacterized protein 84.5 4.3 0.00015 33.2 8.5 63 474-553 18-82 (115)
130 1hz4_A MALT regulatory protein 84.4 4.2 0.00014 40.3 10.0 57 497-553 142-203 (373)
131 2l6j_A TPR repeat-containing p 84.4 4 0.00014 32.4 8.1 56 497-554 11-68 (111)
132 3k9i_A BH0479 protein; putativ 84.3 3.3 0.00011 34.3 7.8 56 497-554 34-91 (117)
133 3sf4_A G-protein-signaling mod 84.2 4.2 0.00014 40.0 9.7 192 326-553 99-336 (406)
134 2l6j_A TPR repeat-containing p 83.7 1.2 4.2E-05 35.5 4.7 29 380-408 4-33 (111)
135 2lni_A Stress-induced-phosphop 83.5 4 0.00014 33.2 7.9 67 497-566 23-91 (133)
136 3q49_B STIP1 homology and U bo 83.4 13 0.00043 30.7 11.2 67 497-566 16-84 (137)
137 3urz_A Uncharacterized protein 83.4 5.3 0.00018 36.8 9.6 66 497-566 61-129 (208)
138 1elr_A TPR2A-domain of HOP; HO 82.9 5 0.00017 32.2 8.2 57 497-554 11-68 (131)
139 2vyi_A SGTA protein; chaperone 82.2 6.2 0.00021 31.6 8.5 68 497-566 19-87 (131)
140 2fbn_A 70 kDa peptidylprolyl i 81.7 2.3 7.8E-05 38.6 6.2 119 357-554 43-187 (198)
141 2ifu_A Gamma-SNAP; membrane fu 81.5 5.3 0.00018 39.2 9.3 172 327-551 29-222 (307)
142 1wao_1 Serine/threonine protei 81.2 1.5 5.1E-05 46.9 5.5 49 360-408 14-69 (477)
143 4a1s_A PINS, partner of inscut 81.2 9.8 0.00034 37.8 11.3 60 495-554 228-293 (411)
144 1hz4_A MALT regulatory protein 81.1 8.7 0.0003 38.0 10.7 80 326-408 65-164 (373)
145 2qfc_A PLCR protein; TPR, HTH, 80.9 19 0.00065 34.7 12.9 57 497-553 162-225 (293)
146 1elw_A TPR1-domain of HOP; HOP 80.3 6.5 0.00022 30.9 7.9 67 497-566 11-79 (118)
147 3rjv_A Putative SEL1 repeat pr 80.1 18 0.00062 33.3 12.0 173 331-556 3-200 (212)
148 3k9i_A BH0479 protein; putativ 79.9 0.19 6.6E-06 42.1 -1.7 79 327-408 3-90 (117)
149 1qqe_A Vesicular transport pro 79.8 8.2 0.00028 37.5 9.9 60 497-556 124-190 (292)
150 4b4t_Q 26S proteasome regulato 79.4 11 0.00037 37.9 10.9 56 497-552 142-203 (434)
151 2ifu_A Gamma-SNAP; membrane fu 79.1 10 0.00035 37.2 10.4 56 497-553 123-184 (307)
152 3qou_A Protein YBBN; thioredox 79.1 10 0.00035 36.9 10.4 144 372-566 109-262 (287)
153 3gyz_A Chaperone protein IPGC; 79.0 8.1 0.00028 34.6 8.8 56 497-554 43-100 (151)
154 3gw4_A Uncharacterized protein 79.0 21 0.00072 31.3 11.6 56 497-552 73-135 (203)
155 3q15_A PSP28, response regulat 78.8 6.8 0.00023 39.3 9.2 79 326-407 113-210 (378)
156 3qky_A Outer membrane assembly 78.8 8.6 0.0003 36.1 9.4 58 497-554 59-127 (261)
157 3qwp_A SET and MYND domain-con 78.6 3.2 0.00011 44.1 6.9 56 497-552 336-399 (429)
158 2if4_A ATFKBP42; FKBP-like, al 78.6 9.5 0.00032 38.4 10.2 110 380-553 179-293 (338)
159 4gcn_A Protein STI-1; structur 78.4 7.9 0.00027 32.8 8.2 55 497-553 15-71 (127)
160 3n71_A Histone lysine methyltr 78.2 3.5 0.00012 44.8 7.2 56 497-552 358-421 (490)
161 2vgx_A Chaperone SYCD; alterna 77.7 13 0.00045 32.4 9.7 56 497-554 28-85 (148)
162 2xm6_A Protein corresponding t 77.5 37 0.0013 35.3 14.8 48 504-554 310-361 (490)
163 1ihg_A Cyclophilin 40; ppiase 77.5 9 0.00031 39.4 9.8 65 497-565 280-347 (370)
164 1kt0_A FKBP51, 51 kDa FK506-bi 77.4 10 0.00034 40.0 10.4 111 379-553 267-380 (457)
165 1wy6_A Hypothetical protein ST 76.7 16 0.00054 33.9 9.8 77 479-556 78-157 (172)
166 2kc7_A BFR218_protein; tetratr 76.4 20 0.00069 27.9 9.7 58 497-556 7-67 (99)
167 2xcb_A PCRH, regulatory protei 76.3 16 0.00056 31.0 9.8 56 497-554 25-82 (142)
168 3ma5_A Tetratricopeptide repea 76.1 5 0.00017 32.5 6.0 30 379-408 6-36 (100)
169 2xm6_A Protein corresponding t 75.9 18 0.00063 37.6 11.8 184 327-566 56-262 (490)
170 3sz7_A HSC70 cochaperone (SGT) 75.0 11 0.00038 32.7 8.4 67 497-566 18-86 (164)
171 2pzi_A Probable serine/threoni 74.6 6.3 0.00022 43.9 8.2 141 363-558 402-566 (681)
172 3upv_A Heat shock protein STI1 73.4 15 0.00051 30.2 8.5 67 497-566 11-79 (126)
173 1nu0_A Hypothetical protein YQ 73.2 1.6 5.4E-05 39.8 2.3 56 266-324 4-65 (138)
174 1na3_A Designed protein CTPR2; 72.7 19 0.00065 27.1 8.4 27 497-525 50-76 (91)
175 1kt0_A FKBP51, 51 kDa FK506-bi 71.3 6.8 0.00023 41.3 7.1 118 357-553 273-415 (457)
176 3rkv_A Putative peptidylprolyl 70.9 15 0.0005 31.8 8.2 59 497-559 70-130 (162)
177 2xev_A YBGF; tetratricopeptide 70.8 18 0.00061 29.3 8.3 56 497-554 9-69 (129)
178 3e4b_A ALGK; tetratricopeptide 69.9 18 0.00062 37.8 10.1 57 504-566 231-290 (452)
179 3n71_A Histone lysine methyltr 69.5 4.5 0.00016 43.9 5.4 103 381-553 352-464 (490)
180 2kat_A Uncharacterized protein 68.3 11 0.00036 30.7 6.3 31 378-408 17-48 (115)
181 1vhx_A Putative holliday junct 67.9 2.6 8.9E-05 38.7 2.6 76 265-341 3-86 (150)
182 2if4_A ATFKBP42; FKBP-like, al 67.2 5.6 0.00019 40.1 5.2 93 382-553 232-328 (338)
183 4ga2_A E3 SUMO-protein ligase 67.0 20 0.00067 31.1 8.2 66 497-566 38-106 (150)
184 3q15_A PSP28, response regulat 65.8 26 0.00089 34.9 9.9 180 326-552 153-364 (378)
185 3qww_A SET and MYND domain-con 64.2 15 0.0005 39.2 8.0 56 497-552 347-410 (433)
186 3ro3_A PINS homolog, G-protein 63.7 15 0.0005 30.3 6.4 56 497-552 16-77 (164)
187 2r5s_A Uncharacterized protein 61.9 53 0.0018 28.7 10.2 58 507-566 91-151 (176)
188 1ihg_A Cyclophilin 40; ppiase 61.7 12 0.00042 38.4 6.6 87 379-544 272-361 (370)
189 1hxi_A PEX5, peroxisome target 61.1 29 0.001 28.9 7.9 67 497-566 24-92 (121)
190 2yhc_A BAMD, UPF0169 lipoprote 58.7 40 0.0014 30.9 9.1 58 497-554 11-71 (225)
191 4e6h_A MRNA 3'-END-processing 57.2 50 0.0017 37.3 11.1 171 328-554 357-571 (679)
192 3mv2_B Coatomer subunit epsilo 54.4 45 0.0016 34.0 9.3 57 497-553 107-165 (310)
193 2ff4_A Probable regulatory pro 53.7 46 0.0016 34.5 9.5 66 497-563 178-249 (388)
194 3qww_A SET and MYND domain-con 52.0 8.2 0.00028 41.1 3.4 27 381-407 341-368 (433)
195 4f3v_A ESX-1 secretion system 51.6 1.7E+02 0.006 29.2 13.0 59 497-558 142-205 (282)
196 3e4b_A ALGK; tetratricopeptide 50.0 43 0.0015 34.9 8.5 59 501-567 262-326 (452)
197 2c2l_A CHIP, carboxy terminus 48.8 74 0.0025 30.6 9.5 56 495-552 43-100 (281)
198 2v5f_A Prolyl 4-hydroxylase su 48.2 93 0.0032 25.2 8.8 57 497-553 12-75 (104)
199 3ly7_A Transcriptional activat 46.1 80 0.0027 33.2 9.7 71 473-562 275-346 (372)
200 3rkv_A Putative peptidylprolyl 41.8 31 0.0011 29.6 5.1 58 497-554 18-93 (162)
201 2p58_C Putative type III secre 38.7 46 0.0016 29.1 5.3 52 497-554 47-99 (116)
202 2uwj_G Type III export protein 38.2 45 0.0016 29.1 5.2 52 497-554 46-98 (115)
203 3rjv_A Putative SEL1 repeat pr 36.2 1.2E+02 0.0041 27.6 8.4 18 537-554 102-119 (212)
204 1pc2_A Mitochondria fission pr 34.5 57 0.002 29.9 5.7 66 497-565 39-110 (152)
205 2hr2_A Hypothetical protein; a 34.3 82 0.0028 28.9 6.8 55 497-553 18-86 (159)
206 2hr2_A Hypothetical protein; a 33.9 1.3E+02 0.0045 27.5 8.1 68 497-564 64-147 (159)
207 2zu6_B Programmed cell death p 31.4 1.7E+02 0.0058 29.7 9.2 71 495-566 171-244 (307)
208 2kc7_A BFR218_protein; tetratr 31.3 27 0.00092 27.1 2.6 52 357-408 5-64 (99)
209 1q2j_A MU-conotoxin SMIIIA; HE 31.1 11 0.00039 24.4 0.2 10 11-20 14-23 (26)
210 1klx_A Cysteine rich protein B 30.9 2.4E+02 0.0083 23.8 9.3 56 497-555 64-128 (138)
211 2nsz_A Programmed cell death p 30.8 1.3E+02 0.0044 26.4 7.2 71 495-566 12-85 (129)
212 3bee_A Putative YFRE protein; 28.9 2E+02 0.0067 23.2 7.7 47 506-554 25-73 (93)
213 3qwp_A SET and MYND domain-con 27.8 81 0.0028 33.2 6.3 56 497-552 294-357 (429)
214 2ion_A PDCD4, programmed cell 22.8 1.3E+02 0.0044 27.4 5.8 70 495-565 14-86 (152)
215 4b4t_Q 26S proteasome regulato 22.4 1.3E+02 0.0045 29.8 6.4 55 498-552 12-83 (434)
216 4h7y_A Dual specificity protei 21.3 1.3E+02 0.0044 28.1 5.4 64 504-568 74-138 (161)
217 1v54_E Cytochrome C oxidase po 20.7 3E+02 0.01 23.9 7.3 61 505-566 25-86 (109)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=2.2e-27 Score=260.61 Aligned_cols=172 Identities=9% Similarity=0.021 Sum_probs=156.5
Q ss_pred EeccccCC-CCCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCc---------HHH--H-Hhccc----CCC
Q 007864 317 VVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKN---------LAK--R-VKKFV----EKD 379 (587)
Q Consensus 317 Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~---------l~e--r-Fd~M~----~pd 379 (587)
+++.+|++ |+.|++++|.++|++|.+.|+.||.++|| +||++|++.+. +++ + |++|. .||
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn---~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYN---VLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHH---HHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHH---HHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 46777888 58999999999999999999999999999 99999998765 344 5 88886 478
Q ss_pred CCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHH
Q 007864 380 AKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVA 458 (587)
Q Consensus 380 ~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vy 458 (587)
.+|||+| .+|++.|++++|+++|++|.+. |+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~---g~--------------------------------------------- 136 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAF---GI--------------------------------------------- 136 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TC---------------------------------------------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC---------------------------------------------
Confidence 8888888 8888888888888888888888 88
Q ss_pred HHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcC
Q 007864 459 EILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAG 537 (587)
Q Consensus 459 naLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~ 537 (587)
.||++|||+| |.||++.|++++|+++|++|.+.|+.||..|| +||++|++.
T Consensus 137 -------------~Pd~~tyn~l---------------I~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 137 -------------QPRLRSYGPA---------------LFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp -------------CCCHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred -------------CCccceehHH---------------HHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 4677889999 99999999999999999999999999999999 999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007864 538 DDLRKGGELHHKTLRTGLHHTEMKAVALGL 567 (587)
Q Consensus 538 G~l~~A~~l~~~M~k~G~~pd~~vynaLIa 567 (587)
|++++|.+++++|.+.|+.|+..||++|+.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~ 218 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEE 218 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 999999999999999999999999999984
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.89 E-value=5.2e-24 Score=233.77 Aligned_cols=167 Identities=6% Similarity=-0.084 Sum_probs=153.2
Q ss_pred hccCchHHHHHHHHHHhcCCCCceEEeccccCCC-CCCC---------CccchhhHHHHHHcCCCCCCCCCCchhHHHHh
Q 007864 292 ESTFFMEDMEEQMLNIKEKFEPVGFVVGFPVGSP-EKDT---------PKQFSQAHVKAFLSKLDSLPNFKGMPICLVNE 361 (587)
Q Consensus 292 ~s~k~~eal~~~~~m~~~G~~Pd~~Ty~sLL~ac-~~g~---------l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~ 361 (587)
..+...+++..+.+|...|+.||.+|||+||++| ..+. ++.|.++|++|.+.|+.||.++|| +||++
T Consensus 38 k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn---~lI~~ 114 (501)
T 4g26_A 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFT---NGARL 114 (501)
T ss_dssp TSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHH---HHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHH---HHHHH
Confidence 3456788999999999999999999999999984 4443 467899999999999999999999 99999
Q ss_pred hhcCCcHHH--H-Hhccc----CCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHH
Q 007864 362 YGTSKNLAK--R-VKKFV----EKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKF 433 (587)
Q Consensus 362 y~k~G~l~e--r-Fd~M~----~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~T 433 (587)
|++.|++++ + |++|. .||.+|||+| .+|++.|++++|.++|++|.+. |+
T Consensus 115 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~---G~-------------------- 171 (501)
T 4g26_A 115 AVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES---EV-------------------- 171 (501)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TC--------------------
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc---CC--------------------
Confidence 999999999 6 99997 4899999999 9999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHH
Q 007864 434 IARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLF 513 (587)
Q Consensus 434 yL~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf 513 (587)
.||.+|||+| |++|++.|++++|+++|
T Consensus 172 --------------------------------------~Pd~~ty~~L---------------i~~~~~~g~~d~A~~ll 198 (501)
T 4g26_A 172 --------------------------------------VPEEPELAAL---------------LKVSMDTKNADKVYKTL 198 (501)
T ss_dssp --------------------------------------CCCHHHHHHH---------------HHHHHHTTCHHHHHHHH
T ss_pred --------------------------------------CCCHHHHHHH---------------HHHHhhCCCHHHHHHHH
Confidence 3566788999 99999999999999999
Q ss_pred HHHHhcCCCCCHHHH-HHHHHHhcC
Q 007864 514 QTMRVDYIEANEFTI-DLCSACLAG 537 (587)
Q Consensus 514 ~eM~~~Gi~PD~~Ty-sLL~ac~~~ 537 (587)
++|++.|+.||..|| .|+..++..
T Consensus 199 ~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 199 QRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999 999998864
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=7.1e-18 Score=196.06 Aligned_cols=113 Identities=8% Similarity=-0.004 Sum_probs=103.3
Q ss_pred Ccchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHHH
Q 007864 381 KNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAE 459 (587)
Q Consensus 381 vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vyn 459 (587)
+|||+| +|||+.|++++|.++|++|.+....|+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---------------------------------------------- 161 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---------------------------------------------- 161 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT----------------------------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC----------------------------------------------
Confidence 689999 999999999999999999874300044
Q ss_pred HHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCC
Q 007864 460 ILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGD 538 (587)
Q Consensus 460 aLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G 538 (587)
.||++|||+| |+|||+.|++++|+++|++|.+.|+.||.+|| +||+++|+.|
T Consensus 162 ------------~PdvvTYNtL---------------I~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G 214 (1134)
T 3spa_A 162 ------------LLTLDMYNAV---------------MLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214 (1134)
T ss_dssp ------------TCCHHHHHHH---------------HHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred ------------CCCHhHHHHH---------------HHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC
Confidence 5888999999 99999999999999999999999999999999 9999999999
Q ss_pred C-HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 539 D-LRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 539 ~-l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
. .++|.+++++|.+.|+.||.++||+++
T Consensus 215 ~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll 243 (1134)
T 3spa_A 215 QDAGTIERCLEQMSQEGLKLQALFTAVLL 243 (1134)
T ss_dssp CCHHHHHHHHHHHHHHTCCSHHHHHHSCC
T ss_pred CcHHHHHHHHHHHHHcCCCCChhhccccc
Confidence 8 578999999999999999999999876
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=2.5e-17 Score=191.57 Aligned_cols=126 Identities=7% Similarity=-0.008 Sum_probs=109.0
Q ss_pred CCCCCchhHHHHhhhcCCcHHH--H-Hhccc-------CCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCC
Q 007864 349 PNFKGMPICLVNEYGTSKNLAK--R-VKKFV-------EKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSY 417 (587)
Q Consensus 349 ~~tynipiaLI~~y~k~G~l~e--r-Fd~M~-------~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~ 417 (587)
..+|| +||++|||+|++++ + |++|. .||++|||+| +|||+.|++++|+++|++|.+. |+
T Consensus 127 ~~Tyn---aLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~---G~---- 196 (1134)
T 3spa_A 127 QQRLL---AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA---GL---- 196 (1134)
T ss_dssp HHHHH---HHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TC----
T ss_pred HHHHH---HHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CC----
Confidence 45899 99999999999999 6 87764 5899999999 9999999999999999999999 99
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHH
Q 007864 418 LPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVI 497 (587)
Q Consensus 418 ~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI 497 (587)
.||++|||+| |
T Consensus 197 ------------------------------------------------------~PDvvTYntL---------------I 207 (1134)
T 3spa_A 197 ------------------------------------------------------TPDLLSYAAA---------------L 207 (1134)
T ss_dssp ------------------------------------------------------CCCHHHHHHH---------------H
T ss_pred ------------------------------------------------------CCcHHHHHHH---------------H
Confidence 4677889999 9
Q ss_pred HHHHhcCC-HHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 007864 498 SGFSLNGW-YAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHT 558 (587)
Q Consensus 498 ~gy~k~G~-~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd 558 (587)
+|||+.|+ .++|.++|++|.+.|+.||.+|| ++++++.+.+-++..+++ ..++.|+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv-----~P~f~p~ 265 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV-----KPTFSLP 265 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG-----CCCCCCC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh-----CcccCCC
Confidence 99999998 57899999999999999999999 999887766544443332 4567665
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.46 E-value=2e-13 Score=146.76 Aligned_cols=215 Identities=11% Similarity=-0.036 Sum_probs=141.9
Q ss_pred CceEEeccccCC-CCCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc---CCCCCcchh
Q 007864 313 PVGFVVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSG 385 (587)
Q Consensus 313 Pd~~Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNs 385 (587)
+|..+++.+..+ +..|++++|.+++.++.+.+ +.+..+++ .++.+|.+.|+.++ . |+++. ..+..+|+.
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 378 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYP---LHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLA 378 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHH---HHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHH---HHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHH
Confidence 566666666666 45666677777776666554 22555666 66667777776666 3 55553 234556666
Q ss_pred h-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCC-HHHH---HHHHHHH------HHHHHHHHh-hCc
Q 007864 386 P-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPD-DKFI---ARLWAAR------RDVINGVVS-IGE 453 (587)
Q Consensus 386 L-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd-~~Ty---L~aca~~------~~lh~~m~k-~~p 453 (587)
+ ..|.+.|++++|.++|++|.+. .|+ ..+| ..++.+. ..++..+.+ ...
T Consensus 379 l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (597)
T 2xpi_A 379 VGIYYLCVNKISEARRYFSKSSTM-------------------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh-------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 6 6777777777777777766655 332 3344 3344433 333333333 333
Q ss_pred cHHHHHHHHHH-----------HHHhcCC---CCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007864 454 YVCVAEILVML-----------LFLDGIK---RPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVD 519 (587)
Q Consensus 454 d~~vynaLI~~-----------~vFd~M~---~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~ 519 (587)
+..+|+.+... +.|++|. ..|..+|+.+ +..|.+.|++++|+++|++|.+.
T Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l---------------~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNEL---------------GVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH---------------HHHHHHhCCHHHHHHHHHHHHHh
Confidence 55566665554 4555543 1355666666 99999999999999999998876
Q ss_pred ----CCCCC--HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 520 ----YIEAN--EFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 520 ----Gi~PD--~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
+..|+ ..+| .+..+|.+.|++++|.++++.+.+.+ ..+..+|..|+
T Consensus 505 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~ 557 (597)
T 2xpi_A 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIA 557 (597)
T ss_dssp HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHH
T ss_pred hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 77888 6788 99999999999999999999988875 33677777776
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.42 E-value=2.9e-13 Score=145.62 Aligned_cols=212 Identities=8% Similarity=-0.011 Sum_probs=169.3
Q ss_pred eEEeccccCC-CCCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh-
Q 007864 315 GFVVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP- 386 (587)
Q Consensus 315 ~~Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL- 386 (587)
..+|+.++.. ++.|++++|.+++.++.+. .+|..+++ .++.+|.+.|++++ + |++|. ..+..+|+.+
T Consensus 272 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 346 (597)
T 2xpi_A 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLL---CKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHL 346 (597)
T ss_dssp HHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHH---HHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHH
Confidence 3456666777 5788999999999988765 57888888 99999999999999 5 88775 3478889999
Q ss_pred hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCC-CHHHH---HHHHHHH------HHHHHHHHh-hCccH
Q 007864 387 GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPP-DDKFI---ARLWAAR------RDVINGVVS-IGEYV 455 (587)
Q Consensus 387 ~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~P-d~~Ty---L~aca~~------~~lh~~m~k-~~pd~ 455 (587)
.+|.+.|+.++|.++|++|.+. .| +..++ ...|.+. ..++..+.+ ...+.
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 407 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDR-------------------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFG 407 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH-------------------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHhh-------------------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999866 44 44455 3444444 445555555 33457
Q ss_pred HHHHHHHHH-----------HHHhcCC---CCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007864 456 CVAEILVML-----------LFLDGIK---RPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYI 521 (587)
Q Consensus 456 ~vynaLI~~-----------~vFd~M~---~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi 521 (587)
.+|+.++.. ++|++|. ..+..+|+.+ +.+|.+.|++++|+++|++|.+..-
T Consensus 408 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l---------------~~~~~~~g~~~~A~~~~~~~~~~~~ 472 (597)
T 2xpi_A 408 PAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFL---------------GMQHMQLGNILLANEYLQSSYALFQ 472 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHH---------------HHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 788888877 6666654 2477888888 9999999999999999999987642
Q ss_pred CCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHH
Q 007864 522 EANEFTI-DLCSACLAGDDLRKGGELHHKTLRT----GLHHT--EMKAVALG 566 (587)
Q Consensus 522 ~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~----G~~pd--~~vynaLI 566 (587)
.|..+| .+...|.+.|++++|.++++.+.+. |..|+ ..+|+.|+
T Consensus 473 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 523 (597)
T 2xpi_A 473 -YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG 523 (597)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 368889 9999999999999999999999887 88898 78888887
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.48 E-value=1.5e-06 Score=88.41 Aligned_cols=231 Identities=13% Similarity=-0.001 Sum_probs=131.4
Q ss_pred cCchHHHHHHHHHHhcCCCCceE-EeccccCC-CCCCCCccchhhHHHHHHcCCCCCCC-CCCchhHHHHhhhcCCcHHH
Q 007864 294 TFFMEDMEEQMLNIKEKFEPVGF-VVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPN-FKGMPICLVNEYGTSKNLAK 370 (587)
Q Consensus 294 ~k~~eal~~~~~m~~~G~~Pd~~-Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~~-tynipiaLI~~y~k~G~l~e 370 (587)
+...+++..+.+.+. ..|+.. +|..+..+ ...|++++|.+.+..+++.. |+.. .+. .+-..|.+.|++++
T Consensus 81 g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~---~l~~~~~~~g~~~~ 153 (388)
T 1w3b_A 81 GQLQEAIEHYRHALR--LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRS---DLGNLLKALGRLEE 153 (388)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHH---HHHHHHHTTSCHHH
T ss_pred CCHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHH---HHHHHHHHccCHHH
Confidence 345555555555543 245433 45555555 46788889998888887753 4433 344 56677778888888
Q ss_pred --H-Hhccc--CC-CCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---HHHHHH
Q 007864 371 --R-VKKFV--EK-DAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---ARLWAA 440 (587)
Q Consensus 371 --r-Fd~M~--~p-d~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L~aca~ 440 (587)
+ |+++. .| +..+|+.+ ..|.+.|++++|++.|+++.+. .|+.... +..+..
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------~p~~~~~~~~lg~~~~ 214 (388)
T 1w3b_A 154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-------------------DPNFLDAYINLGNVLK 214 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------------CCCcHHHHHHHHHHHH
Confidence 5 77664 23 45788888 8899999999999999988877 5554433 211111
Q ss_pred H-------HHHHHHHHhhCc-cHHHHHHHHHH-----------HHHhcCC--CC-ChhhhHHHHHhHHhhc---------
Q 007864 441 R-------RDVINGVVSIGE-YVCVAEILVML-----------LFLDGIK--RP-DLVAWSSLLSVHEEWA--------- 489 (587)
Q Consensus 441 ~-------~~lh~~m~k~~p-d~~vynaLI~~-----------~vFd~M~--~p-dvvTyNsLI~gy~km~--------- 489 (587)
. ...+....+..| +..+++.+... +.|+++. .| +..+|+.+...|.+.+
T Consensus 215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 294 (388)
T 1w3b_A 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1 222233333444 35555555544 4444443 23 4567777744444322
Q ss_pred ------Cc-CHH---HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 490 ------SR-RVV---LVISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 490 ------~~-dvv---sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
.| +.. .+...|.+.|++++|.+.|+++.+. .|+ ..++ .+...+.+.|++++|.+.++.+++
T Consensus 295 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 01 111 4455555555555555555555442 233 3344 555555555555555555555554
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.41 E-value=1.5e-06 Score=88.38 Aligned_cols=231 Identities=10% Similarity=-0.033 Sum_probs=146.5
Q ss_pred CCCceEEeccccCC-CCCCCCccchhhHHHHHHcCCCCCC-CCCCchhHHHHhhhcCCcHHH--H-Hhccc--CCC-CCc
Q 007864 311 FEPVGFVVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLP-NFKGMPICLVNEYGTSKNLAK--R-VKKFV--EKD-AKN 382 (587)
Q Consensus 311 ~~Pd~~Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~-~tynipiaLI~~y~k~G~l~e--r-Fd~M~--~pd-~vt 382 (587)
.+.+..+|..+... ...|++++|...+.++++. .|+. ..|. .+...|.+.|++++ + |+++. .|+ ...
T Consensus 63 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~---~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 137 (388)
T 1w3b_A 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYI---NLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137 (388)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHH---HHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHH
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 34455566666666 4688899999999988765 3443 3567 78888999999888 5 77654 354 445
Q ss_pred chhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCH-HHH--HH-HHHHH------HHHHHHHHhh
Q 007864 383 WSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDD-KFI--AR-LWAAR------RDVINGVVSI 451 (587)
Q Consensus 383 YNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~-~Ty--L~-aca~~------~~lh~~m~k~ 451 (587)
|+.+ ..|.+.|++++|.++|+++.+. .|+. .+| +. .+.+. ...+..+.+.
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 198 (388)
T 1w3b_A 138 RSDLGNLLKALGRLEEAKACYLKAIET-------------------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh-------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6777 8888889999999999999877 5654 334 22 22211 3334444444
Q ss_pred Ccc-HHHHHHHHHH-----------HHHhcCC--CC-ChhhhHHHHHhHHhhc---------------CcCHH----HHH
Q 007864 452 GEY-VCVAEILVML-----------LFLDGIK--RP-DLVAWSSLLSVHEEWA---------------SRRVV----LVI 497 (587)
Q Consensus 452 ~pd-~~vynaLI~~-----------~vFd~M~--~p-dvvTyNsLI~gy~km~---------------~~dvv----sLI 497 (587)
.|+ ...+..+-.. ..|++.. .| +..+|+.+...|.+.+ .|+.. .+.
T Consensus 199 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 278 (388)
T 1w3b_A 199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 443 3344443332 2233221 24 5778888877776532 22222 667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007864 498 SGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALGL 567 (587)
Q Consensus 498 ~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLIa 567 (587)
..|.+.|++++|.+.|+++.+.. ..+..+| .+...+.+.|++++|...++.+.+.. ..+..++..|+.
T Consensus 279 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 347 (388)
T 1w3b_A 279 NALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLAS 347 (388)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 77778888888888888777652 3355666 77777888888888888887776642 223455555553
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.40 E-value=3.5e-06 Score=86.80 Aligned_cols=224 Identities=6% Similarity=-0.070 Sum_probs=154.5
Q ss_pred eccccCC-CCCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhc
Q 007864 318 VGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSY 389 (587)
Q Consensus 318 y~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy 389 (587)
+..+... ...|++++|..++..+++.. +.+..++. .+...|.+.|+.++ . |+++. ..+...|+.+ ..|
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~---~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYY---RRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHH---HHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3333333 35789999999999998753 33566777 88999999999999 5 87765 2456789999 999
Q ss_pred ccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHH---H-H--H-HH------------HHHH------HHH
Q 007864 390 PSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDK---F-I--A-RL------------WAAR------RDV 444 (587)
Q Consensus 390 ~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~---T-y--L-~a------------ca~~------~~l 444 (587)
.+.|++++|.+.|+++.+. .|+.. . + + .. +.+. ...
T Consensus 105 ~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS-------------------NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS-------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc-------------------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999877 67654 2 2 2 11 1111 333
Q ss_pred HHHHHh-hCccHHHHHHHHHH-----------HHHhcCC---CCChhhhHHHHHhHHhhc---------------CcCHH
Q 007864 445 INGVVS-IGEYVCVAEILVML-----------LFLDGIK---RPDLVAWSSLLSVHEEWA---------------SRRVV 494 (587)
Q Consensus 445 h~~m~k-~~pd~~vynaLI~~-----------~vFd~M~---~pdvvTyNsLI~gy~km~---------------~~dvv 494 (587)
+..+.+ ...+..+++.+... +.|+++. ..+..+|+.+...|.+.+ .|+..
T Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 245 (450)
T 2y4t_A 166 LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHK 245 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChH
Confidence 444444 33466677777665 5555553 247889999977777643 12211
Q ss_pred ----HH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCC-----HHHH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 495 ----LV------------ISGFSLNGWYAEALGLFQTMRVDYIEAN-----EFTI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 495 ----sL------------I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-----~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
.+ ...|.+.|++++|++.|+++... .|+ ...| .+...+.+.|++++|...+..+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22 67788888888888888888763 455 3466 777888888888888888888877
Q ss_pred cCCCCCHHHHHHHHH
Q 007864 553 TGLHHTEMKAVALGL 567 (587)
Q Consensus 553 ~G~~pd~~vynaLIa 567 (587)
.. ..+..++..+..
T Consensus 324 ~~-p~~~~~~~~l~~ 337 (450)
T 2y4t_A 324 ME-PDNVNALKDRAE 337 (450)
T ss_dssp HC-TTCHHHHHHHHH
T ss_pred hC-cccHHHHHHHHH
Confidence 63 225666666653
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.37 E-value=2.9e-06 Score=87.37 Aligned_cols=244 Identities=9% Similarity=-0.068 Sum_probs=168.1
Q ss_pred CchHHHHHHHHHHhcCCCCceEEeccccCC-CCCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H
Q 007864 295 FFMEDMEEQMLNIKEKFEPVGFVVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R 371 (587)
Q Consensus 295 k~~eal~~~~~m~~~G~~Pd~~Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r 371 (587)
...+++..+.+.+.. .+.+..++..+..+ ...|+.++|...+..+++.+ +.+..++. .+...|.+.|++++ .
T Consensus 41 ~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~---~l~~~~~~~g~~~~A~~ 115 (450)
T 2y4t_A 41 QLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARL---QRGHLLLKQGKLDEAED 115 (450)
T ss_dssp CHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH---HHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHH---HHHHHHHHcCCHHHHHH
Confidence 455555555554432 22344555555555 46899999999999998875 22455677 89999999999999 5
Q ss_pred -HhcccC--CC-C---Ccchhh-hh------------cccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCH
Q 007864 372 -VKKFVE--KD-A---KNWSGP-GS------------YPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDD 431 (587)
Q Consensus 372 -Fd~M~~--pd-~---vtYNsL-~g------------y~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~ 431 (587)
|+++.. |+ . ..|+.+ .. |.+.|++++|++.|+++.+. .|+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~ 176 (450)
T 2y4t_A 116 DFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-------------------CVWD 176 (450)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------------CTTC
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------CCCC
Confidence 888764 32 2 556555 44 89999999999999999987 4543
Q ss_pred -HHH---HHHHHHH------HHHHHHHHh-hCccHHHHHHHHHH-----------HHHhcCC--CC-ChhhhHHH-----
Q 007864 432 -KFI---ARLWAAR------RDVINGVVS-IGEYVCVAEILVML-----------LFLDGIK--RP-DLVAWSSL----- 481 (587)
Q Consensus 432 -~Ty---L~aca~~------~~lh~~m~k-~~pd~~vynaLI~~-----------~vFd~M~--~p-dvvTyNsL----- 481 (587)
..+ ...+.+. ...+..+.+ ...+..+++.+... ..|+++. .| +...|+.+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 333 3333332 455555555 55567777777766 5555553 34 44445444
Q ss_pred -------HHhHHhhc---------------CcC-------HH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH-H
Q 007864 482 -------LSVHEEWA---------------SRR-------VV-LVISGFSLNGWYAEALGLFQTMRVDYIEA-NEFTI-D 529 (587)
Q Consensus 482 -------I~gy~km~---------------~~d-------vv-sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~P-D~~Ty-s 529 (587)
...|.+.+ .|+ .. .+...|.+.|++++|++.++++... .| +...| .
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~ 334 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 45554422 232 11 7788899999999999999998875 45 56788 9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 007864 530 LCSACLAGDDLRKGGELHHKTLRTGLHHT-EMKAVALG 566 (587)
Q Consensus 530 LL~ac~~~G~l~~A~~l~~~M~k~G~~pd-~~vynaLI 566 (587)
+..+|...|++++|.+.++.+++. .|+ ...+..|.
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 999999999999999999999884 454 44555554
No 11
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.28 E-value=1.1e-06 Score=95.48 Aligned_cols=197 Identities=9% Similarity=-0.046 Sum_probs=81.6
Q ss_pred CchHHHHHHHHHHhcCCCCceEEeccccCCC-CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH-H-
Q 007864 295 FFMEDMEEQMLNIKEKFEPVGFVVGFPVGSP-EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK-R- 371 (587)
Q Consensus 295 k~~eal~~~~~m~~~G~~Pd~~Ty~sLL~ac-~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e-r- 371 (587)
...+++..+.+ .+|..+|..++++| ..|++++|...+...++. .+++.+.+ .|+.+|+|.|++++ .
T Consensus 47 ~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~---~Li~~Y~Klg~l~e~e~ 115 (449)
T 1b89_A 47 MVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVET---ELIFALAKTNRLAELEE 115 (449)
T ss_dssp -------------------------------------------------------------------------CHHHHTT
T ss_pred CHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHH---HHHHHHHHhCCHHHHHH
Confidence 46666666654 36888999999995 699999999977777664 55678899 99999999999999 4
Q ss_pred HhcccCCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 007864 372 VKKFVEKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVS 450 (587)
Q Consensus 372 Fd~M~~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k 450 (587)
|-+ .||..+|+.+ ..|...|++++|...|..+..- +. ...++.+..++.+.+
T Consensus 116 f~~--~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~---~~--------------------LA~~L~~Lg~yq~AV-- 168 (449)
T 1b89_A 116 FIN--GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF---GR--------------------LASTLVHLGEYQAAV-- 168 (449)
T ss_dssp TTT--CC----------------CTTTHHHHHHHTTCH---HH--------------------HHHHHHTTTCHHHHH--
T ss_pred HHc--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhH---HH--------------------HHHHHHHhccHHHHH--
Confidence 433 4788899999 9999999999999999987432 11 011111111111111
Q ss_pred hCccHHHHHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-H
Q 007864 451 IGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-D 529 (587)
Q Consensus 451 ~~pd~~vynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-s 529 (587)
+.+..+ .++.+|..+ +.+|+..|++++|......+. ..||. . .
T Consensus 169 --------------ea~~KA--~~~~~Wk~v---------------~~aCv~~~ef~lA~~~~l~L~---~~ad~--l~~ 212 (449)
T 1b89_A 169 --------------DGARKA--NSTRTWKEV---------------CFACVDGKEFRLAQMCGLHIV---VHADE--LEE 212 (449)
T ss_dssp --------------HHHHHH--TCHHHHHHH---------------HHHHHHTTCHHHHHHTTTTTT---TCHHH--HHH
T ss_pred --------------HHHHHc--CCchhHHHH---------------HHHHHHcCcHHHHHHHHHHHH---hCHhh--HHH
Confidence 444444 378899999 999999999999966555422 44554 6 8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 530 LCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 530 LL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
++..|.+.|.++++..+++..+... .-...+++-|.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~ 248 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 248 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHH
Confidence 9999999999999999999887554 44566666664
No 12
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.10 E-value=3.7e-05 Score=72.08 Aligned_cols=187 Identities=9% Similarity=-0.027 Sum_probs=133.7
Q ss_pred CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-HhcccC--C-C-------CCcchhh-hhccc
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFVE--K-D-------AKNWSGP-GSYPS 391 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~~--p-d-------~vtYNsL-~gy~r 391 (587)
..|++++|...+...++.. .+...+. .+-..|.+.|+.++ . |++... | + ...|..+ ..|.+
T Consensus 17 ~~~~~~~A~~~~~~a~~~~--~~~~~~~---~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (258)
T 3uq3_A 17 KARQFDEAIEHYNKAWELH--KDITYLN---NRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHK 91 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHS--CCTHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhh--ccHHHHH---HHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHH
Confidence 4688999999999999887 7777888 89999999999999 4 665442 2 1 5788999 99999
Q ss_pred CCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH--HHHHHHHHHHHHHHHhhCc-cHHHHHHHHHH----
Q 007864 392 TKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI--ARLWAARRDVINGVVSIGE-YVCVAEILVML---- 464 (587)
Q Consensus 392 ~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty--L~aca~~~~lh~~m~k~~p-d~~vynaLI~~---- 464 (587)
.|++++|++.|++..+. .|+...+ +.-+-+.......+.+..| +...+..+-..
T Consensus 92 ~~~~~~A~~~~~~a~~~-------------------~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 92 LGDLKKTIEYYQKSLTE-------------------HRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp TTCHHHHHHHHHHHHHH-------------------CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHhc-------------------CchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh
Confidence 99999999999999987 6776666 3333333333333333222 22223222222
Q ss_pred -------HHHhcCC---CCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHH
Q 007864 465 -------LFLDGIK---RPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCS 532 (587)
Q Consensus 465 -------~vFd~M~---~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ 532 (587)
..|++.. ..+...|..+ -..|.+.|++++|++.|++..+.. |+ ...| .+-.
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l---------------~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~ 215 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNR---------------AAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKAT 215 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHH---------------HHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHHHHHHH
Confidence 3333322 2356677777 888899999999999999887753 44 5667 8888
Q ss_pred HHhcCCCHHHHHHHHHHHHHc
Q 007864 533 ACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 533 ac~~~G~l~~A~~l~~~M~k~ 553 (587)
.+.+.|+.++|.+.+....+.
T Consensus 216 ~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 216 AQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 888999999999988888764
No 13
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.06 E-value=1.9e-05 Score=79.33 Aligned_cols=188 Identities=12% Similarity=0.056 Sum_probs=138.5
Q ss_pred CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhcccCCChhHH
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSYPSTKSFHTN 398 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~G~~eeA 398 (587)
..|++++|...+..+++.. +.+..++. .+-..|.+.|++++ . |++.. ..+..+|+.+ ..|.+.|++++|
T Consensus 77 ~~g~~~~A~~~~~~al~~~-p~~~~~~~---~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 152 (365)
T 4eqf_A 77 KEGDLPVTILFMEAAILQD-PGDAEAWQ---FLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDA 152 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-cCCHHHHH---HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHH
Confidence 4788999999999998764 33556777 89999999999999 5 77654 3467899999 999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH--------------------HHHHHHHHHHHHHHHhhCc---cH
Q 007864 399 RLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI--------------------ARLWAARRDVINGVVSIGE---YV 455 (587)
Q Consensus 399 l~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty--------------------L~aca~~~~lh~~m~k~~p---d~ 455 (587)
++.|+++.+. .|+.... ..-+-+....+..+.+..| +.
T Consensus 153 ~~~~~~al~~-------------------~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 213 (365)
T 4eqf_A 153 CEALKNWIKQ-------------------NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP 213 (365)
T ss_dssp HHHHHHHHHH-------------------CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCH
T ss_pred HHHHHHHHHh-------------------CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCH
Confidence 9999999876 3332211 1111111344444444334 45
Q ss_pred HHHHHHHHH-----------HHHhcCC---CCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007864 456 CVAEILVML-----------LFLDGIK---RPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYI 521 (587)
Q Consensus 456 ~vynaLI~~-----------~vFd~M~---~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi 521 (587)
.+++.+... +.|++.. ..+..+|+.+ ...|.+.|++++|++.|++..+.
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---------------~~~~~~~g~~~~A~~~~~~al~~-- 276 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRL---------------GATLANGDRSEEAVEAYTRALEI-- 276 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHhc--
Confidence 566655544 4444432 2357788888 99999999999999999998875
Q ss_pred CCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 522 EAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 522 ~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
.|+ ..+| .+-..+.+.|++++|...++.+++.
T Consensus 277 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 277 QPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 455 5667 8889999999999999999998864
No 14
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.98 E-value=2.2e-05 Score=78.96 Aligned_cols=188 Identities=10% Similarity=0.074 Sum_probs=136.7
Q ss_pred CCCceEEeccccCC-CCCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-HhcccCCCCCcchhh
Q 007864 311 FEPVGFVVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFVEKDAKNWSGP 386 (587)
Q Consensus 311 ~~Pd~~Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~~pd~vtYNsL 386 (587)
-.|+..++..+... +..++.+.|.+.++.++..+..|+...+. +.+-..|.+.|+.++ + |++ ..+...|..+
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~--~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l 136 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFL--LMAASIYFYDQNPDAALRTLHQ--GDSLECMAMT 136 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHH--HHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHH
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHH--HHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHH
Confidence 34455555555555 46788999999999999888767654333 145588899999999 6 888 4567789999
Q ss_pred -hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH--HHHHHHH----HHHHHHHHhhCccHHHHH
Q 007864 387 -GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI--ARLWAAR----RDVINGVVSIGEYVCVAE 459 (587)
Q Consensus 387 -~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty--L~aca~~----~~lh~~m~k~~pd~~vyn 459 (587)
..|.+.|++++|.+.|+++.+. .||..-+ ..++... ....+..
T Consensus 137 ~~~~~~~g~~~~A~~~l~~~~~~-------------------~p~~~~~~l~~a~~~l~~~~~~~~eA~----------- 186 (291)
T 3mkr_A 137 VQILLKLDRLDLARKELKKMQDQ-------------------DEDATLTQLATAWVSLAAGGEKLQDAY----------- 186 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHHCTTHHHHHH-----------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh-------------------CcCcHHHHHHHHHHHHHhCchHHHHHH-----------
Confidence 9999999999999999999988 6776533 2333322 0011000
Q ss_pred HHHHHHHHhcCC---CCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH-HHHHHH
Q 007864 460 ILVMLLFLDGIK---RPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEA-NEFTI-DLCSAC 534 (587)
Q Consensus 460 aLI~~~vFd~M~---~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~P-D~~Ty-sLL~ac 534 (587)
.+|+++. ..+...|+.+ -..|.+.|++++|.+.|++.... .| |..++ .+...+
T Consensus 187 -----~~~~~~l~~~p~~~~~~~~l---------------a~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~ 244 (291)
T 3mkr_A 187 -----YIFQEMADKCSPTLLLLNGQ---------------AACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLS 244 (291)
T ss_dssp -----HHHHHHHHHSCCCHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred -----HHHHHHHHhCCCcHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3333332 2467789999 89999999999999999997764 35 44567 888888
Q ss_pred hcCCCHHH-HHHHHHHHHHcC
Q 007864 535 LAGDDLRK-GGELHHKTLRTG 554 (587)
Q Consensus 535 ~~~G~l~~-A~~l~~~M~k~G 554 (587)
...|+.++ +.++++.+.+..
T Consensus 245 ~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 245 QHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHTTCCHHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHHhC
Confidence 89999875 678888887654
No 15
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.89 E-value=9.8e-05 Score=71.74 Aligned_cols=190 Identities=9% Similarity=-0.011 Sum_probs=133.7
Q ss_pred CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhcccCCChhHH
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSYPSTKSFHTN 398 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~G~~eeA 398 (587)
..|++++|..++.++.+.. +.+...+. .+...|.+.|+.++ . |++.. ..+..+|..+ ..|.+.|++++|
T Consensus 33 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~---~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A 108 (327)
T 3cv0_A 33 KLANLAEAALAFEAVCQAA-PEREEAWR---SLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 108 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 4788999999999998764 22445566 78888999999999 5 77654 3466788899 999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---H--------------HH--HH------HHHHHHHHHHh-hC
Q 007864 399 RLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---A--------------RL--WA------ARRDVINGVVS-IG 452 (587)
Q Consensus 399 l~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L--------------~a--ca------~~~~lh~~m~k-~~ 452 (587)
++.|++..+. .|+.... + .. +. +....+..+.+ ..
T Consensus 109 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 169 (327)
T 3cv0_A 109 LASLRAWLLS-------------------QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP 169 (327)
T ss_dssp HHHHHHHHHT-------------------STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHh-------------------CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999876 2222111 1 11 11 11333333333 23
Q ss_pred ccHHHHHHHHHH-----------HHHhcCC---CCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007864 453 EYVCVAEILVML-----------LFLDGIK---RPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRV 518 (587)
Q Consensus 453 pd~~vynaLI~~-----------~vFd~M~---~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~ 518 (587)
.+..++..+... +.|++.. ..+..+|..+ ...|.+.|++++|.+.|++..+
T Consensus 170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l---------------~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKL---------------GATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555443 3333332 2356677777 8999999999999999999887
Q ss_pred cCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 519 DYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 519 ~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
.. ..+..++ .+...+.+.|++++|.+.++.+.+..
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 53 2246677 99999999999999999999988754
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.83 E-value=0.00022 Score=69.37 Aligned_cols=190 Identities=9% Similarity=-0.013 Sum_probs=106.6
Q ss_pred CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhcccCC-ChhH
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSYPSTK-SFHT 397 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~G-~~ee 397 (587)
..|++++|.+++..+++.. +.+...+. .+...+.+.|+.++ . |+++. ..+...|..+ ..|.+.| ++++
T Consensus 34 ~~g~~~~A~~~~~~~l~~~-p~~~~~~~---~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 109 (330)
T 3hym_B 34 YNCDFKMCYKLTSVVMEKD-PFHASCLP---VHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEH 109 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCTTTHH---HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHH
T ss_pred HcCCHHHHHHHHHHHHHcC-CCChhhHH---HHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHH
Confidence 4677888888888877653 22333444 56677777788777 4 55543 2356677777 7788888 7888
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCC-HHHH---HHHHHHH------HHHHHHHHhhCc-cHHHHHHHHHH--
Q 007864 398 NRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPD-DKFI---ARLWAAR------RDVINGVVSIGE-YVCVAEILVML-- 464 (587)
Q Consensus 398 Al~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd-~~Ty---L~aca~~------~~lh~~m~k~~p-d~~vynaLI~~-- 464 (587)
|.+.|++..+. .|+ ...+ -..+... ...+..+.+..| +...+..+-..
T Consensus 110 A~~~~~~a~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 110 ARRYLSKATTL-------------------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHTT-------------------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-------------------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 88888877765 333 2233 2222222 233333333222 23333333222
Q ss_pred ---------HHHhcCC---CCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCCC
Q 007864 465 ---------LFLDGIK---RPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDY--------IEAN 524 (587)
Q Consensus 465 ---------~vFd~M~---~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~G--------i~PD 524 (587)
+.|++.. ..+...|+.+ ...|.+.|++++|.+.|++..... ...+
T Consensus 171 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l---------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 235 (330)
T 3hym_B 171 LTNNSKLAERFFSQALSIAPEDPFVMHEV---------------GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKW 235 (330)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCChHHHHHH---------------HHHHHHcccHHHHHHHHHHHHHHhhhccccccccHH
Confidence 3343332 2356677777 666666666666666666655421 0222
Q ss_pred HHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 525 EFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 525 ~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
..+| .+-..+.+.|++++|...+....+.
T Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 3455 6666666666666666666666554
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.82 E-value=0.00031 Score=69.86 Aligned_cols=204 Identities=11% Similarity=0.023 Sum_probs=134.8
Q ss_pred CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhcccCCChhHH
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSYPSTKSFHTN 398 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~G~~eeA 398 (587)
..|++++|...+..+++.. +.+..++. .+-..|.+.|+.++ . |++.. ..+..+|..+ ..|.+.|++++|
T Consensus 76 ~~g~~~~A~~~~~~al~~~-p~~~~~~~---~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 151 (368)
T 1fch_A 76 QEGDLPNAVLLFEAAVQQD-PKHMEAWQ---YLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQA 151 (368)
T ss_dssp HTTCHHHHHHHHHHHHHSC-TTCHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHH---HHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5889999999999998764 23445666 78889999999999 5 77654 3467889999 999999999999
Q ss_pred HHHHHHHhhcccCCCCCCC-CCCCCCCC-CCCCCHHHH-HHHHHHH------HHHHHHHHhhCcc---HHHHHHHHHH--
Q 007864 399 RLQAKRQLRRFISDVDSSY-LPPEGCPN-YKPPDDKFI-ARLWAAR------RDVINGVVSIGEY---VCVAEILVML-- 464 (587)
Q Consensus 399 l~Lf~eM~~~~~~Gv~~~~-~~~~g~~~-~~~Pd~~Ty-L~aca~~------~~lh~~m~k~~pd---~~vynaLI~~-- 464 (587)
++.|+++... .-.... +...+... ...++.... +..+... ...+..+.+..|+ ..+++.+...
T Consensus 152 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~ 228 (368)
T 1fch_A 152 CEILRDWLRY---TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 228 (368)
T ss_dssp HHHHHHHHHT---STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---CcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH
Confidence 9999999876 210000 00000000 000000000 1111111 3444444444443 5566555544
Q ss_pred ---------HHHhcCC--CC-ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HH
Q 007864 465 ---------LFLDGIK--RP-DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DL 530 (587)
Q Consensus 465 ---------~vFd~M~--~p-dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sL 530 (587)
..|++.. .| +..+|+.+ ...|.+.|++++|++.|++.... .|+ ...+ .+
T Consensus 229 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l---------------~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l 291 (368)
T 1fch_A 229 LSGEYDKAVDCFTAALSVRPNDYLLWNKL---------------GATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNL 291 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCCHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 3444332 23 56677777 88999999999999999998775 344 5667 88
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc
Q 007864 531 CSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 531 L~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
-..+.+.|++++|...+..+.+.
T Consensus 292 ~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 292 GISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 89999999999999999988764
No 18
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.82 E-value=0.00037 Score=65.74 Aligned_cols=176 Identities=10% Similarity=0.020 Sum_probs=126.3
Q ss_pred CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhcccCCChhHH
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSYPSTKSFHTN 398 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~G~~eeA 398 (587)
..|++++|.+.+..+++.. +.+...+. .+...|.+.|+.++ + |++.. ..+...|..+ ..|.+.|++++|
T Consensus 49 ~~~~~~~A~~~~~~al~~~-~~~~~~~~---~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 124 (252)
T 2ho1_A 49 QRGNTEQAKVPLRKALEID-PSSADAHA---ALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEA 124 (252)
T ss_dssp HTTCTGGGHHHHHHHHHHC-TTCHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCChHHHHHHHHHHHhcC-CChHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHH
Confidence 4788999999999988764 22445566 78888999999999 5 76653 3466788889 999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---HH-HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcC---C
Q 007864 399 RLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---AR-LWAARRDVINGVVSIGEYVCVAEILVMLLFLDGI---K 471 (587)
Q Consensus 399 l~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L~-aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M---~ 471 (587)
++.|++..+. +. .|+.... +. .+.......... +.|++. .
T Consensus 125 ~~~~~~~~~~---~~--------------~~~~~~~~~~la~~~~~~g~~~~A~----------------~~~~~~~~~~ 171 (252)
T 2ho1_A 125 YQRLLEASQD---TL--------------YPERSRVFENLGLVSLQMKKPAQAK----------------EYFEKSLRLN 171 (252)
T ss_dssp HHHHHHHTTC---TT--------------CTTHHHHHHHHHHHHHHTTCHHHHH----------------HHHHHHHHHC
T ss_pred HHHHHHHHhC---cc--------------CcccHHHHHHHHHHHHHcCCHHHHH----------------HHHHHHHhcC
Confidence 9999999884 45 6765544 11 111110000000 111111 1
Q ss_pred CCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHH
Q 007864 472 RPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKT 550 (587)
Q Consensus 472 ~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M 550 (587)
..+...|..+ ...|.+.|++++|.+.|++..+.. ..+...+ .+...+.+.|+.++|.+.++.+
T Consensus 172 ~~~~~~~~~l---------------a~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 172 RNQPSVALEM---------------ADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp SCCHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 2356678888 899999999999999999987642 2345566 8888899999999999999999
Q ss_pred HHcC
Q 007864 551 LRTG 554 (587)
Q Consensus 551 ~k~G 554 (587)
.+..
T Consensus 236 ~~~~ 239 (252)
T 2ho1_A 236 KRLY 239 (252)
T ss_dssp HHHC
T ss_pred HHHC
Confidence 8864
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.78 E-value=1.5e-05 Score=86.46 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=41.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHH 548 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~ 548 (587)
.+.+.+.|++++|.+.++++ -+..|| .++.+|...|+++.|.....
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l 201 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL 201 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999988 288999 99999999999999955433
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.69 E-value=0.00055 Score=68.62 Aligned_cols=179 Identities=11% Similarity=0.078 Sum_probs=111.5
Q ss_pred HHHHhhhcCCcHHH--H-HhcccCCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHH
Q 007864 357 CLVNEYGTSKNLAK--R-VKKFVEKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDK 432 (587)
Q Consensus 357 aLI~~y~k~G~l~e--r-Fd~M~~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~ 432 (587)
.+..+|...|+.++ . ++....|+..++..+ ..|.+.|+.++|++.+++|... +. .|+..
T Consensus 39 ~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~---~~--------------~P~~~ 101 (291)
T 3mkr_A 39 FLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSR---SV--------------DVTNT 101 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS---CC--------------CCSCH
T ss_pred HHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc---cc--------------CCCCH
Confidence 56788899999988 5 777656677888888 9999999999999999999887 76 78776
Q ss_pred HH--HHH--HHHH---HHHHHHHHhhCccHHHHHHHHHH-----------HHHhcCC--CCChhhhHHHHHhHHhhcCcC
Q 007864 433 FI--ARL--WAAR---RDVINGVVSIGEYVCVAEILVML-----------LFLDGIK--RPDLVAWSSLLSVHEEWASRR 492 (587)
Q Consensus 433 Ty--L~a--ca~~---~~lh~~m~k~~pd~~vynaLI~~-----------~vFd~M~--~pdvvTyNsLI~gy~km~~~d 492 (587)
++ +.+ +... .+......+ ..+...+..+... +.|+++. .||..- ..+..
T Consensus 102 ~~~~~la~~~~~~g~~~~Al~~l~~-~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~l~~--------- 170 (291)
T 3mkr_A 102 TFLLMAASIYFYDQNPDAALRTLHQ-GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATL-TQLAT--------- 170 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTT-CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHH---------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHH-HHHHH---------
Confidence 66 222 1111 111111111 1233333333322 2333332 233211 11100
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007864 493 VVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALGL 567 (587)
Q Consensus 493 vvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLIa 567 (587)
..+..+...|++++|+.+|+++.+. ...|...| .+-.++.+.|++++|.+.+.+.++.. .-+..++.-++.
T Consensus 171 --a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~ 242 (291)
T 3mkr_A 171 --AWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVV 242 (291)
T ss_dssp --HHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred --HHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 1123334458899999999999876 33455666 88888999999999999999988754 124555655653
No 21
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.60 E-value=0.00056 Score=63.63 Aligned_cols=183 Identities=14% Similarity=0.124 Sum_probs=119.4
Q ss_pred ceEEeccccCC-CCCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh
Q 007864 314 VGFVVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP 386 (587)
Q Consensus 314 d~~Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL 386 (587)
...+|..+-.. ...|++++|...+.++++.. +.+...+. .+-..|.+.|+.++ + |++.. ..+...|..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~---~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 97 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYI---NFANLLSSVNELERALAFYDKALELDSSAATAYYGA 97 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 33444444444 36899999999999998743 22445556 77888999999999 5 76654 3466788889
Q ss_pred -hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCC-HHHH--HH-HHHHH---HHHHHHHHhhCccHHHH
Q 007864 387 -GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPD-DKFI--AR-LWAAR---RDVINGVVSIGEYVCVA 458 (587)
Q Consensus 387 -~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd-~~Ty--L~-aca~~---~~lh~~m~k~~pd~~vy 458 (587)
..|.+.|++++|++.|++..+. .|+ ...+ +. .+.+. .+..
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~~~~~a~~~~~~~~~~~A~------------- 145 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRA-------------------GMENGDLFYMLGTVLVKLEQPKLAL------------- 145 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-------------------TCCSHHHHHHHHHHHHHTSCHHHHH-------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHh-------------------CCCCHHHHHHHHHHHHHhccHHHHH-------------
Confidence 9999999999999999999887 443 3333 21 11111 1111
Q ss_pred HHHHHHHHHhcC---CCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHH
Q 007864 459 EILVMLLFLDGI---KRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSAC 534 (587)
Q Consensus 459 naLI~~~vFd~M---~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac 534 (587)
..|++. ...+...|..+ ...|.+.|++++|++.|++..... ..+..++ .+...+
T Consensus 146 ------~~~~~~~~~~~~~~~~~~~l---------------~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 203 (243)
T 2q7f_A 146 ------PYLQRAVELNENDTEARFQF---------------GMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTY 203 (243)
T ss_dssp ------HHHHHHHHHCTTCHHHHHHH---------------HHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred ------HHHHHHHHhCCccHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 111111 12356678888 889999999999999999988753 2346677 999999
Q ss_pred hcCCCHHHHHHHHHHHHHcC
Q 007864 535 LAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 535 ~~~G~l~~A~~l~~~M~k~G 554 (587)
.+.|+.++|.+.++.+.+..
T Consensus 204 ~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 204 AYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHTTCTTHHHHHHHHHHHHC
T ss_pred HHccCHHHHHHHHHHHHccC
Confidence 99999999999999998864
No 22
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.59 E-value=0.00091 Score=61.08 Aligned_cols=176 Identities=11% Similarity=-0.081 Sum_probs=123.1
Q ss_pred CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhcccC-CChhH
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSYPST-KSFHT 397 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~-G~~ee 397 (587)
..|++++|.+.+..+.+.. +.+...+. .+...|.+.|+.++ . |++.. ..+..+|..+ ..|.+. |++++
T Consensus 20 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~---~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~ 95 (225)
T 2vq2_A 20 RGQDYRQATASIEDALKSD-PKNELAWL---VRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAE 95 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHhhHHHHHHHHHHHHHhC-ccchHHHH---HHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHH
Confidence 4678899999999888753 22345566 78888999999998 4 76653 3466788888 999999 99999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---HH-HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcC---
Q 007864 398 NRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---AR-LWAARRDVINGVVSIGEYVCVAEILVMLLFLDGI--- 470 (587)
Q Consensus 398 Al~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L~-aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M--- 470 (587)
|++.|+++.+. +. .|+.... +. .+.........+ ..|+++
T Consensus 96 A~~~~~~~~~~---~~--------------~~~~~~~~~~l~~~~~~~~~~~~A~----------------~~~~~~~~~ 142 (225)
T 2vq2_A 96 SMAYFDKALAD---PT--------------YPTPYIANLNKGICSAKQGQFGLAE----------------AYLKRSLAA 142 (225)
T ss_dssp HHHHHHHHHTS---TT--------------CSCHHHHHHHHHHHHHHTTCHHHHH----------------HHHHHHHHH
T ss_pred HHHHHHHHHcC---cC--------------CcchHHHHHHHHHHHHHcCCHHHHH----------------HHHHHHHHh
Confidence 99999999884 44 6664433 11 111110000000 111111
Q ss_pred CCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHH
Q 007864 471 KRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHK 549 (587)
Q Consensus 471 ~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~ 549 (587)
...+...|..+ ...|.+.|++++|.+.|++.....-..+...+ .+...+...|+.+++..++..
T Consensus 143 ~~~~~~~~~~l---------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 143 QPQFPPAFKEL---------------ARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp STTCHHHHHHH---------------HHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCchHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 12346678888 88999999999999999998875322356667 777888899999999999998
Q ss_pred HHHc
Q 007864 550 TLRT 553 (587)
Q Consensus 550 M~k~ 553 (587)
+.+.
T Consensus 208 ~~~~ 211 (225)
T 2vq2_A 208 LQAN 211 (225)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 23
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.56 E-value=0.0015 Score=63.40 Aligned_cols=75 Identities=17% Similarity=0.043 Sum_probs=59.0
Q ss_pred ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 474 dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
+..+|+.+ -..|.+.|++++|++.|++..+..- -+...+ .+-..+.+.|+.++|.+.+....+
T Consensus 235 ~~~~~~~l---------------a~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 235 WEPLLNNL---------------GHVCRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp CCHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHH---------------HHHHHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 45678888 9999999999999999999887532 245667 888999999999999999998876
Q ss_pred cCCCC-CHHHHHHHH
Q 007864 553 TGLHH-TEMKAVALG 566 (587)
Q Consensus 553 ~G~~p-d~~vynaLI 566 (587)
. .| +...+..|.
T Consensus 299 ~--~p~~~~~~~~l~ 311 (330)
T 3hym_B 299 L--RRDDTFSVTMLG 311 (330)
T ss_dssp T--CSCCHHHHHHHH
T ss_pred c--CCCchHHHHHHH
Confidence 4 35 444444444
No 24
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.52 E-value=0.00058 Score=56.49 Aligned_cols=65 Identities=22% Similarity=0.199 Sum_probs=54.2
Q ss_pred ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 474 dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
+...|..+ ...|.+.|++++|.++|+++....- .+..++ .+...+.+.|+.++|...+..+.+
T Consensus 68 ~~~~~~~l---------------~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 68 SAEAWYNL---------------GNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp CHHHHHHH---------------HHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred chHHHHHH---------------HHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 45667777 8889999999999999999987642 356677 899999999999999999998876
Q ss_pred cC
Q 007864 553 TG 554 (587)
Q Consensus 553 ~G 554 (587)
..
T Consensus 132 ~~ 133 (136)
T 2fo7_A 132 LD 133 (136)
T ss_dssp HS
T ss_pred cC
Confidence 53
No 25
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00046 Score=71.65 Aligned_cols=77 Identities=8% Similarity=-0.059 Sum_probs=55.0
Q ss_pred ccCchHHHHHHHHHHhcCCCCceEEeccccCC-CCCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH-
Q 007864 293 STFFMEDMEEQMLNIKEKFEPVGFVVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK- 370 (587)
Q Consensus 293 s~k~~eal~~~~~m~~~G~~Pd~~Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e- 370 (587)
.+...+++..+.+.+... ||..+|..+..+ ...|++++|.+.+..+++.. +.+...+. .+..+|.+.|+.++
T Consensus 19 ~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~---~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLL---RRASANEGLGKFADA 92 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHH---HHHHHHHHTTCHHHH
T ss_pred hccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHH---HHHHHHHHHhhHHHH
Confidence 345667777666666554 676666666555 36899999999999988764 22345666 78889999999998
Q ss_pred -H-Hhcc
Q 007864 371 -R-VKKF 375 (587)
Q Consensus 371 -r-Fd~M 375 (587)
. |+++
T Consensus 93 ~~~~~~~ 99 (514)
T 2gw1_A 93 MFDLSVL 99 (514)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4 7655
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.43 E-value=0.00067 Score=65.77 Aligned_cols=215 Identities=8% Similarity=-0.090 Sum_probs=137.3
Q ss_pred chHHHHHHHHHHhcCCCC-ceEEeccccCC-CCCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H
Q 007864 296 FMEDMEEQMLNIKEKFEP-VGFVVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R 371 (587)
Q Consensus 296 ~~eal~~~~~m~~~G~~P-d~~Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r 371 (587)
..++...+.+.+.. .| +..++..+... ...|+.++|.+.+.++.+.. +.+..++. .+...|.+.|+.++ +
T Consensus 37 ~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~---~la~~~~~~~~~~~A~~ 110 (327)
T 3cv0_A 37 LAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHA---ALAVSHTNEHNANAALA 110 (327)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH---HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHH---HHHHHHHHcCCHHHHHH
Confidence 44444444443332 23 23333333333 35889999999999998763 22445566 78888999999999 5
Q ss_pred -HhcccC--C-CCCcchhh--------------h--hcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCC-
Q 007864 372 -VKKFVE--K-DAKNWSGP--------------G--SYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPD- 430 (587)
Q Consensus 372 -Fd~M~~--p-d~vtYNsL--------------~--gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd- 430 (587)
|++... | +...|..+ . .+.+.|++++|.+.|+++.+. .|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~ 171 (327)
T 3cv0_A 111 SLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM-------------------NPND 171 (327)
T ss_dssp HHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH-------------------STTC
T ss_pred HHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh-------------------CCCC
Confidence 766542 2 22333222 2 377889999999999999887 443
Q ss_pred HHHH---HHHHHHH------HHHHHHHHhhCc-cHHHHHHHHHH-----------HHHhcCC---CCChhhhHHHHHhHH
Q 007864 431 DKFI---ARLWAAR------RDVINGVVSIGE-YVCVAEILVML-----------LFLDGIK---RPDLVAWSSLLSVHE 486 (587)
Q Consensus 431 ~~Ty---L~aca~~------~~lh~~m~k~~p-d~~vynaLI~~-----------~vFd~M~---~pdvvTyNsLI~gy~ 486 (587)
...+ -..+.+. ...+..+.+..| +..++..+... ..|++.. ..+..+|..+
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l----- 246 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNM----- 246 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-----
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH-----
Confidence 3444 2222222 333444444333 45555555444 4444432 2356778888
Q ss_pred hhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CHHHH-HHHHHHhcCCCHHHHHHHHHHH
Q 007864 487 EWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEA-----------NEFTI-DLCSACLAGDDLRKGGELHHKT 550 (587)
Q Consensus 487 km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~P-----------D~~Ty-sLL~ac~~~G~l~~A~~l~~~M 550 (587)
...|.+.|++++|.+.|++.....-.. +..+| .+..++.+.|+.++|..++...
T Consensus 247 ----------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 247 ----------AVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred ----------HHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999999987653221 36778 9999999999999999987643
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.39 E-value=0.0023 Score=64.09 Aligned_cols=174 Identities=13% Similarity=0.040 Sum_probs=120.5
Q ss_pred HHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCC
Q 007864 357 CLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPP 429 (587)
Q Consensus 357 aLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~P 429 (587)
.+-..|.+.|++++ . |+++. ..+..+|+.+ ..|.+.|++++|++.|++..+. .|
T Consensus 70 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------------~p 130 (365)
T 4eqf_A 70 EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL-------------------QP 130 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------------------CC
Confidence 77888999999999 5 77764 3467889999 9999999999999999999987 55
Q ss_pred C-HHHH--H-HHHHHH------HHHHHHHHhhCccHH-HHHH----------HHHH-----------HHHhcCC--CC--
Q 007864 430 D-DKFI--A-RLWAAR------RDVINGVVSIGEYVC-VAEI----------LVML-----------LFLDGIK--RP-- 473 (587)
Q Consensus 430 d-~~Ty--L-~aca~~------~~lh~~m~k~~pd~~-vyna----------LI~~-----------~vFd~M~--~p-- 473 (587)
+ ...+ + ..+.+. ...+..+.+..|+.. .+.. +... +.|+++. .|
T Consensus 131 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 210 (365)
T 4eqf_A 131 NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM 210 (365)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS
T ss_pred CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc
Confidence 5 3344 2 222222 333333333333211 1111 1111 3444332 23
Q ss_pred -ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHH
Q 007864 474 -DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTL 551 (587)
Q Consensus 474 -dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~ 551 (587)
+..+|+.+ ...|.+.|++++|++.|++..+.. ..+..+| .+..++.+.|++++|...++.++
T Consensus 211 ~~~~~~~~l---------------~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 211 IDPDLQTGL---------------GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp CCHHHHHHH---------------HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHH---------------HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57788888 999999999999999999988753 2246778 99999999999999999999998
Q ss_pred HcCCCCCHHHHHHHH
Q 007864 552 RTGLHHTEMKAVALG 566 (587)
Q Consensus 552 k~G~~pd~~vynaLI 566 (587)
+.. ..+..++..|.
T Consensus 275 ~~~-p~~~~~~~~l~ 288 (365)
T 4eqf_A 275 EIQ-PGFIRSRYNLG 288 (365)
T ss_dssp HHC-TTCHHHHHHHH
T ss_pred hcC-CCchHHHHHHH
Confidence 863 22355666665
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.33 E-value=0.0019 Score=64.07 Aligned_cols=198 Identities=13% Similarity=0.045 Sum_probs=126.5
Q ss_pred CCCCccchh-hHHHHHHcCCCC-----CCCCCCchhHHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhcccCC
Q 007864 327 KDTPKQFSQ-AHVKAFLSKLDS-----LPNFKGMPICLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSYPSTK 393 (587)
Q Consensus 327 ~g~l~~A~~-l~~~M~~~Gl~p-----d~~tynipiaLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~G 393 (587)
.|+++.|.. .+.+..+. .| +...+. .+-..|.+.|++++ . |+++. ..+..+|..+ ..|.+.|
T Consensus 38 ~~~~~~a~~~~~~~a~~~--~~~~~~~~~~~~~---~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQF--EEENPLRDHPQPF---EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp --------CHHHHCCCCC--CSSCTTTTCSSHH---HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhHHHhc--CCCCcccchHHHH---HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence 456666666 55544322 22 234455 77888999999999 5 77664 3466789999 9999999
Q ss_pred ChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCC-HHHH--H-HHHHHH------HHHHHHHHhhCccH-HH-----
Q 007864 394 SFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPD-DKFI--A-RLWAAR------RDVINGVVSIGEYV-CV----- 457 (587)
Q Consensus 394 ~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd-~~Ty--L-~aca~~------~~lh~~m~k~~pd~-~v----- 457 (587)
++++|++.|++..+. .|+ ..++ + ..+... ...+..+.+..|+. ..
T Consensus 113 ~~~~A~~~~~~al~~-------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 173 (368)
T 1fch_A 113 QELLAISALRRCLEL-------------------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE 173 (368)
T ss_dssp CHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---
T ss_pred CHHHHHHHHHHHHhc-------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 999999999999987 454 3344 2 222222 33333333322211 11
Q ss_pred --------------HHHHHHH-------HHHhcCC--CC---ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHH
Q 007864 458 --------------AEILVML-------LFLDGIK--RP---DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALG 511 (587)
Q Consensus 458 --------------ynaLI~~-------~vFd~M~--~p---dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~ 511 (587)
...+... ..|+++. .| +..+|+.+ ...|.+.|++++|++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l---------------~~~~~~~g~~~~A~~ 238 (368)
T 1fch_A 174 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL---------------GVLFNLSGEYDKAVD 238 (368)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred HHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 1111111 3444432 23 46778888 999999999999999
Q ss_pred HHHHHHhcCCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 512 LFQTMRVDYIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 512 Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
.|++.... .|+ ..+| .+...+.+.|++++|...+..+++.. ..+..++..|.
T Consensus 239 ~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~ 292 (368)
T 1fch_A 239 CFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLG 292 (368)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 99998875 344 5677 99999999999999999999998864 22455565554
No 29
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.002 Score=66.77 Aligned_cols=209 Identities=9% Similarity=0.005 Sum_probs=138.5
Q ss_pred ccCchHHHHHHHHHHhcCCCCceEEeccccCC-CCCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH-
Q 007864 293 STFFMEDMEEQMLNIKEKFEPVGFVVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK- 370 (587)
Q Consensus 293 s~k~~eal~~~~~m~~~G~~Pd~~Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e- 370 (587)
.+...+++..+.+.+... |+..++..+... ...|++++|...+..+.+.. +.+..++. .+...|.+.|+.++
T Consensus 250 ~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~---~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYY---HRGQMNFILQNYDQA 323 (514)
T ss_dssp SSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHH---HHHHHHHHTTCTTHH
T ss_pred CCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHH---HHHHHHHHhCCHHHH
Confidence 345666666655555433 443334444444 36899999999999887653 23455666 78888999999988
Q ss_pred -H-Hhccc---CCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCC-HHHH--H-HHHHH
Q 007864 371 -R-VKKFV---EKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPD-DKFI--A-RLWAA 440 (587)
Q Consensus 371 -r-Fd~M~---~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd-~~Ty--L-~aca~ 440 (587)
. |++.. ..+...|..+ ..|.+.|++++|++.|+++.+. .|+ ...+ + ..+.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 324 GKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK-------------------FPEAPEVPNFFAEILTD 384 (514)
T ss_dssp HHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-------------------STTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------cccCHHHHHHHHHHHHH
Confidence 4 66543 3467788888 9999999999999999998876 333 2333 1 11211
Q ss_pred H---HHHHHHHHhhCccHHHHHHHHHHHHHhcCCC--CChhhhHHHHHhHHhhcCcCHHHHHHHHHh---cCCHHHHHHH
Q 007864 441 R---RDVINGVVSIGEYVCVAEILVMLLFLDGIKR--PDLVAWSSLLSVHEEWASRRVVLVISGFSL---NGWYAEALGL 512 (587)
Q Consensus 441 ~---~~lh~~m~k~~pd~~vynaLI~~~vFd~M~~--pdvvTyNsLI~gy~km~~~dvvsLI~gy~k---~G~~~eAl~L 512 (587)
. ...... +...+ +....... -...+|..+ ...|.+ .|++++|.+.
T Consensus 385 ~~~~~~A~~~----------~~~a~--~~~~~~~~~~~~~~~~~~l---------------~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 385 KNDFDKALKQ----------YDLAI--ELENKLDGIYVGIAPLVGK---------------ATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp TTCHHHHHHH----------HHHHH--HHHHTSSSCSSCSHHHHHH---------------HHHHHTSCCTTHHHHHHHH
T ss_pred CCCHHHHHHH----------HHHHH--HhhhccchHHHHHHHHHHH---------------HHHHhhhhhcCCHHHHHHH
Confidence 1 111111 11110 11111110 014478888 889999 9999999999
Q ss_pred HHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 513 FQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 513 f~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
|++..... .-+..++ .+...+.+.|+.++|.+.++...+..
T Consensus 438 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 438 LEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 99988753 2245667 99999999999999999999998865
No 30
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.26 E-value=0.01 Score=51.99 Aligned_cols=146 Identities=10% Similarity=-0.024 Sum_probs=102.3
Q ss_pred HHHHhhhcCCcHHH--H-HhcccC---CCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCC
Q 007864 357 CLVNEYGTSKNLAK--R-VKKFVE---KDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPP 429 (587)
Q Consensus 357 aLI~~y~k~G~l~e--r-Fd~M~~---pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~P 429 (587)
.+-..|.+.|+.++ . |+++.+ .+...|..+ ..|.+.|++++|.+.|++..+. .|
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------------------~~ 73 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-------------------AP 73 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------------CC
Confidence 45667778899988 5 877653 356678888 9999999999999999999877 44
Q ss_pred CHH-HH--H-HHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcC---CCCChhhhHHHHHhHHhhcCcCHHHHHHHHHh
Q 007864 430 DDK-FI--A-RLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGI---KRPDLVAWSSLLSVHEEWASRRVVLVISGFSL 502 (587)
Q Consensus 430 d~~-Ty--L-~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M---~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k 502 (587)
+.. .+ + ..+.......... +.|++. ...+...|..+ ...|.+
T Consensus 74 ~~~~~~~~~a~~~~~~~~~~~A~----------------~~~~~~~~~~~~~~~~~~~~---------------a~~~~~ 122 (186)
T 3as5_A 74 DNVKVATVLGLTYVQVQKYDLAV----------------PLLIKVAEANPINFNVRFRL---------------GVALDN 122 (186)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHH----------------HHHHHHHHHCTTCHHHHHHH---------------HHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCHHHHH----------------HHHHHHHhcCcHhHHHHHHH---------------HHHHHH
Confidence 433 33 1 1121110000000 112211 12356677777 888999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 503 NGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 503 ~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
.|++++|.+.|++..... ..+...+ .+...+...|+.++|...+....+.
T Consensus 123 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 123 LGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999999999999988764 2345677 8889999999999999999988764
No 31
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.23 E-value=0.00097 Score=63.21 Aligned_cols=177 Identities=11% Similarity=0.016 Sum_probs=106.3
Q ss_pred CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhcccCCChhHH
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSYPSTKSFHTN 398 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~G~~eeA 398 (587)
..|++++|...+.+.++.. +.+..++. .+-..|.+.|++++ + |++.. ..+...|..+ ..|.+.|++++|
T Consensus 55 ~~~~~~~A~~~~~~al~~~-~~~~~~~~---~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 130 (275)
T 1xnf_A 55 SLGLRALARNDFSQALAIR-PDMPEVFN---YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLA 130 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHC-CCCHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HcccHHHHHHHHHHHHHcC-CCcHHHHH---HHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHH
Confidence 5677777777777776653 12344555 66677777777777 4 55443 2356677777 777777777777
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---HHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCCCCCh
Q 007864 399 RLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---ARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDL 475 (587)
Q Consensus 399 l~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~~pdv 475 (587)
++.|+++.+. .|+.... +..+......... . ..+. +.... ..++.
T Consensus 131 ~~~~~~a~~~-------------------~~~~~~~~~~~~~~~~~~~~~~A-~------~~~~-----~~~~~-~~~~~ 178 (275)
T 1xnf_A 131 QDDLLAFYQD-------------------DPNDPFRSLWLYLAEQKLDEKQA-K------EVLK-----QHFEK-SDKEQ 178 (275)
T ss_dssp HHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHHCHHHH-H------HHHH-----HHHHH-SCCCS
T ss_pred HHHHHHHHHh-------------------CCCChHHHHHHHHHHHhcCHHHH-H------HHHH-----HHHhc-CCcch
Confidence 7777777766 4444433 1111111000000 0 0000 11111 12334
Q ss_pred hhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CC-HHHH-HHHHHHhcCCCHHHHHHHHHHHH
Q 007864 476 VAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIE--AN-EFTI-DLCSACLAGDDLRKGGELHHKTL 551 (587)
Q Consensus 476 vTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~--PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~ 551 (587)
..|+ + ...+...++.++|++.+++....... |+ ..+| .+-..+.+.|+.++|...++..+
T Consensus 179 ~~~~-~---------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 242 (275)
T 1xnf_A 179 WGWN-I---------------VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242 (275)
T ss_dssp THHH-H---------------HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHH-H---------------HHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444 5 67778888889999999887654221 11 4677 88888999999999999999998
Q ss_pred HcC
Q 007864 552 RTG 554 (587)
Q Consensus 552 k~G 554 (587)
+..
T Consensus 243 ~~~ 245 (275)
T 1xnf_A 243 ANN 245 (275)
T ss_dssp TTC
T ss_pred hCC
Confidence 764
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.19 E-value=0.004 Score=58.92 Aligned_cols=157 Identities=10% Similarity=-0.086 Sum_probs=110.9
Q ss_pred HHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCC
Q 007864 357 CLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPP 429 (587)
Q Consensus 357 aLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~P 429 (587)
.+-..|.+.|+.++ . |++.. ..+...|..+ ..|.+.|++++|++.|++..+. .|
T Consensus 10 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-------------------~P 70 (217)
T 2pl2_A 10 RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-------------------TP 70 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------CC
Confidence 66677889999999 5 77654 2466789999 9999999999999999999887 67
Q ss_pred CHHHH---HHHHHHHH-----------HHHHHHHhhCccHHHHHHHHHHHHHhcCC--CC-ChhhhHHHHHhHHhhcCcC
Q 007864 430 DDKFI---ARLWAARR-----------DVINGVVSIGEYVCVAEILVMLLFLDGIK--RP-DLVAWSSLLSVHEEWASRR 492 (587)
Q Consensus 430 d~~Ty---L~aca~~~-----------~lh~~m~k~~pd~~vynaLI~~~vFd~M~--~p-dvvTyNsLI~gy~km~~~d 492 (587)
+.... +..+.... .-+.... ..|++.. .| +...|..+
T Consensus 71 ~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~---------------~~~~~al~~~P~~~~~~~~l----------- 124 (217)
T 2pl2_A 71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL---------------SVLKDAERVNPRYAPLHLQR----------- 124 (217)
T ss_dssp TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHH---------------HHHHHHHHHCTTCHHHHHHH-----------
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHH---------------HHHHHHHHhCcccHHHHHHH-----------
Confidence 65443 11111001 0000000 2222221 23 45677777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 007864 493 VVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHH-TEMKAVALG 566 (587)
Q Consensus 493 vvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~p-d~~vynaLI 566 (587)
=..|.+.|++++|++.|++..+.. .+...+ .+-..+...|++++|...++..++.. | +...+..|.
T Consensus 125 ----g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la 192 (217)
T 2pl2_A 125 ----GLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYA 192 (217)
T ss_dssp ----HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHH
T ss_pred ----HHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHH
Confidence 778899999999999999988877 677788 88888999999999999999988753 4 344555554
No 33
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.15 E-value=0.012 Score=52.92 Aligned_cols=55 Identities=9% Similarity=-0.056 Sum_probs=47.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
-..|.+.|++++|++.|++..+. .|+ ...| .+-..+.+.|+.++|.+.++..++.
T Consensus 114 g~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 114 GLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 88899999999999999998875 444 4567 8888999999999999999998874
No 34
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.15 E-value=0.0049 Score=56.13 Aligned_cols=163 Identities=12% Similarity=0.040 Sum_probs=108.3
Q ss_pred HHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCC
Q 007864 357 CLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPP 429 (587)
Q Consensus 357 aLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~P 429 (587)
.+...|.+.|++++ . |++.. ..+...|..+ ..|.+.|++++|.+.|++..+. .|
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------------------~~ 73 (225)
T 2vq2_A 13 QLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI-------------------KP 73 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh-------------------CC
Confidence 66778888999988 4 76554 3456788888 9999999999999999999877 44
Q ss_pred CH-HHH--H-HHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCCCC-ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcC
Q 007864 430 DD-KFI--A-RLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRP-DLVAWSSLLSVHEEWASRRVVLVISGFSLNG 504 (587)
Q Consensus 430 d~-~Ty--L-~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~~p-dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G 504 (587)
+. ..+ + ..+.....-+.... ..+. +..+.-..| +...|..+ ...|.+.|
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~------~~~~-----~~~~~~~~~~~~~~~~~l---------------~~~~~~~~ 127 (225)
T 2vq2_A 74 DSAEINNNYGWFLCGRLNRPAESM------AYFD-----KALADPTYPTPYIANLNK---------------GICSAKQG 127 (225)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHH------HHHH-----HHHTSTTCSCHHHHHHHH---------------HHHHHHTT
T ss_pred CChHHHHHHHHHHHHhcCcHHHHH------HHHH-----HHHcCcCCcchHHHHHHH---------------HHHHHHcC
Confidence 33 333 1 11111000000000 0000 222200112 35677778 88999999
Q ss_pred CHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 505 WYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 505 ~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
++++|++.|+++.+.. |+ ...+ .+...+.+.|+.++|...+..+.+..-..+...+..+.
T Consensus 128 ~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 189 (225)
T 2vq2_A 128 QFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGW 189 (225)
T ss_dssp CHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 9999999999988753 44 6667 88899999999999999999998865323455554443
No 35
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.13 E-value=0.0098 Score=57.97 Aligned_cols=79 Identities=5% Similarity=-0.157 Sum_probs=63.6
Q ss_pred CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc--CC-CCCcchhh-hhcccCCChhHH
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV--EK-DAKNWSGP-GSYPSTKSFHTN 398 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~--~p-d~vtYNsL-~gy~r~G~~eeA 398 (587)
..|++++|...+..+++.. +.+..++. .+-..|.+.|+.++ . |++.. .| +...|..+ ..|.+.|++++|
T Consensus 15 ~~g~~~~A~~~~~~~l~~~-p~~~~~~~---~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 90 (359)
T 3ieg_A 15 AAGQLADALSQFHAAVDGD-PDNYIAYY---RRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEA 90 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHH---HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-cccHHHHH---HHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHH
Confidence 4688999999999998753 22345566 78888999999999 5 77654 23 56788999 999999999999
Q ss_pred HHHHHHHhhc
Q 007864 399 RLQAKRQLRR 408 (587)
Q Consensus 399 l~Lf~eM~~~ 408 (587)
.+.|++..+.
T Consensus 91 ~~~~~~~~~~ 100 (359)
T 3ieg_A 91 EDDFKKVLKS 100 (359)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHhc
Confidence 9999999876
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.02 E-value=0.002 Score=60.95 Aligned_cols=195 Identities=8% Similarity=-0.120 Sum_probs=121.7
Q ss_pred ccCchHHHHHHHHHHhcCCCCceEEeccccCC-CCCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH-
Q 007864 293 STFFMEDMEEQMLNIKEKFEPVGFVVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK- 370 (587)
Q Consensus 293 s~k~~eal~~~~~m~~~G~~Pd~~Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e- 370 (587)
.+...++...+.+.+... +.+..++..+-.. ...|++++|...+...++.. +.+..++. .+-..|.+.|+.++
T Consensus 56 ~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~---~la~~~~~~g~~~~A 130 (275)
T 1xnf_A 56 LGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHL---NRGIALYYGGRDKLA 130 (275)
T ss_dssp TTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHH---HHHHHHHHTTCHHHH
T ss_pred cccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHH---HHHHHHHHhccHHHH
Confidence 345666666666555432 2234455555555 46899999999999998863 23456677 88899999999999
Q ss_pred -H-Hhccc--CCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH-H-HHHHHH--
Q 007864 371 -R-VKKFV--EKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI-A-RLWAAR-- 441 (587)
Q Consensus 371 -r-Fd~M~--~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty-L-~aca~~-- 441 (587)
. |+++. .|+...+... ..+.+.|++++|+..|++.... . .++...+ + ..+...
T Consensus 131 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~---------------~~~~~~~~~~~~~~~~~~ 192 (275)
T 1xnf_A 131 QDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---S---------------DKEQWGWNIVEFYLGNIS 192 (275)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---S---------------CCCSTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc---C---------------CcchHHHHHHHHHHHhcC
Confidence 5 77765 3555555555 5556779999999999888776 1 3333333 1 111111
Q ss_pred -HHHHHHHHhhCccHHHHHHHHHHHHHhcCCC-------CChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHH
Q 007864 442 -RDVINGVVSIGEYVCVAEILVMLLFLDGIKR-------PDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLF 513 (587)
Q Consensus 442 -~~lh~~m~k~~pd~~vynaLI~~~vFd~M~~-------pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf 513 (587)
.... ..++...+ .+..+|..+ -..|.+.|++++|.+.|
T Consensus 193 ~~~a~-------------------~~~~~~~~~~~~~~~~~~~~~~~l---------------a~~~~~~g~~~~A~~~~ 238 (275)
T 1xnf_A 193 EQTLM-------------------ERLKADATDNTSLAEHLSETNFYL---------------GKYYLSLGDLDSATALF 238 (275)
T ss_dssp HHHHH-------------------HHHHHHCCSHHHHHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHH
T ss_pred HHHHH-------------------HHHHHHhcccccccccccHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 1111 12222211 124677778 89999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhcCCCHHHHHHHH
Q 007864 514 QTMRVDYIEANEFTIDLCSACLAGDDLRKGGELH 547 (587)
Q Consensus 514 ~eM~~~Gi~PD~~TysLL~ac~~~G~l~~A~~l~ 547 (587)
++.... .|+... ....++...|++++|.+-+
T Consensus 239 ~~al~~--~p~~~~-~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 239 KLAVAN--NVHNFV-EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHTT--CCTTCH-HHHHHHHHHHHHHHC----
T ss_pred HHHHhC--CchhHH-HHHHHHHHHHHHHhhHHHH
Confidence 998864 464322 2333455667777766544
No 37
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.96 E-value=0.013 Score=48.19 Aligned_cols=106 Identities=19% Similarity=0.202 Sum_probs=81.7
Q ss_pred cchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHHHH
Q 007864 382 NWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEI 460 (587)
Q Consensus 382 tYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vyna 460 (587)
.|+.+ ..|.+.|++++|+++|+++.+. .-
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~----------------------------------------------- 32 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL---DP----------------------------------------------- 32 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT-----------------------------------------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc---CC-----------------------------------------------
Confidence 46777 8888889999999999888766 22
Q ss_pred HHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCC
Q 007864 461 LVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDD 539 (587)
Q Consensus 461 LI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~ 539 (587)
.+...|..+ ...|.+.|++++|.++|+++...+ ..+...+ .+...+...|+
T Consensus 33 ------------~~~~~~~~~---------------a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 33 ------------RSAEAWYNL---------------GNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp ------------TCHHHHHHH---------------HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred ------------cchhHHHHH---------------HHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcC
Confidence 133456667 788899999999999999998764 2345677 88899999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 540 LRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 540 l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
+++|.++++.+.+..- .+..++..+.
T Consensus 85 ~~~A~~~~~~~~~~~~-~~~~~~~~la 110 (136)
T 2fo7_A 85 YDEAIEYYQKALELDP-RSAEAWYNLG 110 (136)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHH
Confidence 9999999999988653 2445555554
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.91 E-value=0.033 Score=52.16 Aligned_cols=151 Identities=7% Similarity=-0.052 Sum_probs=101.1
Q ss_pred CCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCC-HHHH--H-HHHHHH------HHHHHHH
Q 007864 380 AKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPD-DKFI--A-RLWAAR------RDVINGV 448 (587)
Q Consensus 380 ~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd-~~Ty--L-~aca~~------~~lh~~m 448 (587)
...|..+ ..|.+.|++++|++.|++..+. .|+ ...+ + ..+... ...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 97 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI-------------------DPSSADAHAALAVVFQTEMEPKLADEEYRKA 97 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------------------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5678888 8899999999999999999877 443 3333 2 222222 3333333
Q ss_pred HhhCc-cHHHHHHHHHH-----------HHHhcCCC----C-ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHH
Q 007864 449 VSIGE-YVCVAEILVML-----------LFLDGIKR----P-DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALG 511 (587)
Q Consensus 449 ~k~~p-d~~vynaLI~~-----------~vFd~M~~----p-dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~ 511 (587)
.+..| +..++..+... +.|++..+ | +...|..+ ...|.+.|++++|.+
T Consensus 98 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l---------------a~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 98 LASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENL---------------GLVSLQMKKPAQAKE 162 (252)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred HHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 34333 44555554443 44544432 3 44566777 888999999999999
Q ss_pred HHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 512 LFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 512 Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
.|++..... .-+...+ .+...+...|+.++|...+..+.+..- .+...+..+.
T Consensus 163 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~ 216 (252)
T 2ho1_A 163 YFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG-QNARSLLLGI 216 (252)
T ss_dssp HHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC-CCHHHHHHHH
T ss_pred HHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 999988754 2246677 899999999999999999999887542 3444444443
No 39
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.89 E-value=0.00092 Score=64.27 Aligned_cols=191 Identities=12% Similarity=0.044 Sum_probs=117.4
Q ss_pred CCCCCccchhhHHHHHHc-------CCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc-----------CCCCCcch
Q 007864 326 EKDTPKQFSQAHVKAFLS-------KLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV-----------EKDAKNWS 384 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~-------Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~-----------~pd~vtYN 384 (587)
..|++++|..++.++++. .-.....++. .+-..|...|++++ . |++.. .....+|+
T Consensus 39 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~---~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 115 (311)
T 3nf1_A 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLN---ILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLN 115 (311)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH---HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 478889999999888763 2222334566 78888899999998 3 55432 12356888
Q ss_pred hh-hhcccCCChhHHHHHHHHHhhcccC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHHHHH
Q 007864 385 GP-GSYPSTKSFHTNRLQAKRQLRRFIS--DVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEIL 461 (587)
Q Consensus 385 sL-~gy~r~G~~eeAl~Lf~eM~~~~~~--Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vynaL 461 (587)
.+ ..|.+.|++++|++.|++..+.... |- -.|+........+.. +....+...-...+...
T Consensus 116 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-------------~~~~~~~~~~~la~~---~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 116 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-------------DHPDVAKQLNNLALL---CQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT-------------TCHHHHHHHHHHHHH---HHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC-------------CChHHHHHHHHHHHH---HHHcCCHHHHHHHHHHH
Confidence 99 9999999999999999998764000 01 012221111111111 00000000000011111
Q ss_pred HHHHHHhcCCCC----ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----------------
Q 007864 462 VMLLFLDGIKRP----DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDY----------------- 520 (587)
Q Consensus 462 I~~~vFd~M~~p----dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~G----------------- 520 (587)
+ ++++....+ ...+|+.+ -..|.+.|++++|.+.|++.....
T Consensus 180 ~--~~~~~~~~~~~~~~~~~~~~l---------------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 242 (311)
T 3nf1_A 180 L--EIYQTKLGPDDPNVAKTKNNL---------------ASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM 242 (311)
T ss_dssp H--HHHHHTSCTTCHHHHHHHHHH---------------HHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH
T ss_pred H--HHHHHHhCCCCHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 1 333333211 34567777 889999999999999999988531
Q ss_pred ------------------------------CCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 521 ------------------------------IEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 521 ------------------------------i~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
..|+ ..++ .+-..+.+.|++++|.+.++..++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1233 3456 888889999999999999988765
No 40
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=96.86 E-value=0.026 Score=59.01 Aligned_cols=56 Identities=13% Similarity=0.031 Sum_probs=37.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEA-NEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~P-D~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
-..|.+.|++++|.+.|++..... | +...| .+...+...|++++|.+++..+.+..
T Consensus 317 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 317 GQMYFILQDYKNAKEDFQKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 666777777777777777766543 3 23455 66667777777777777777776653
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.05 Score=50.42 Aligned_cols=178 Identities=8% Similarity=-0.036 Sum_probs=118.6
Q ss_pred HHHHhhhcCCcHHH--H-HhcccC--CCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCC
Q 007864 357 CLVNEYGTSKNLAK--R-VKKFVE--KDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPD 430 (587)
Q Consensus 357 aLI~~y~k~G~l~e--r-Fd~M~~--pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd 430 (587)
.+-..|.+.|++++ . |++..+ .+...|..+ ..|.+.|++++|++.|++..+.. +.. .|+
T Consensus 10 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~--------------~~~ 74 (258)
T 3uq3_A 10 AEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQG-REM--------------RAD 74 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHT--------------TCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-ccc--------------ccc
Confidence 45667788899998 4 554321 778899999 99999999999999999988750 011 233
Q ss_pred H----HHH--HH-HHHHH------HHHHHHHHhhCccHHHHHHHHHH----HHHhcCC--CC-ChhhhHHHHHhHHhhcC
Q 007864 431 D----KFI--AR-LWAAR------RDVINGVVSIGEYVCVAEILVML----LFLDGIK--RP-DLVAWSSLLSVHEEWAS 490 (587)
Q Consensus 431 ~----~Ty--L~-aca~~------~~lh~~m~k~~pd~~vynaLI~~----~vFd~M~--~p-dvvTyNsLI~gy~km~~ 490 (587)
. ..+ +. .+.+. ...+..+.+..|+..++..+=+. ..++... .| +...|..+
T Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------- 145 (258)
T 3uq3_A 75 YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLE--------- 145 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH---------
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHH---------
Confidence 2 333 22 22221 23333333355655444443322 4444432 22 45567777
Q ss_pred cCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 491 RRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 491 ~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
-..|.+.|++++|++.|++.....- .+..+| .+-..+.+.|++++|...+...++..- .+...+..+.
T Consensus 146 ------~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~ 214 (258)
T 3uq3_A 146 ------GKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKA 214 (258)
T ss_dssp ------HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ------HHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHH
Confidence 8889999999999999999887542 256677 999999999999999999999988642 2344555554
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.82 E-value=0.0093 Score=56.53 Aligned_cols=173 Identities=10% Similarity=-0.001 Sum_probs=112.3
Q ss_pred CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-HhcccC--CCCCc----chhh-hhcccCCCh
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFVE--KDAKN----WSGP-GSYPSTKSF 395 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~~--pd~vt----YNsL-~gy~r~G~~ 395 (587)
..|++++|...+...++.. +.+...+. .+-..|.+.|+.++ . |++... ++... |..+ ..|.+.|++
T Consensus 15 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~---~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~ 90 (272)
T 3u4t_A 15 KNNNYAEAIEVFNKLEAKK-YNSPYIYN---RRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD 90 (272)
T ss_dssp TTTCHHHHHHHHHHHHHTT-CCCSTTHH---HHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCcHHHHH---HHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence 4678888999888887653 22344666 78888889999888 4 655432 23333 7788 889999999
Q ss_pred hHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCH-HHH--HHHHHHH-HHHHHHHHhhCccHHHHHHHHHHHHHhcCC
Q 007864 396 HTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDD-KFI--ARLWAAR-RDVINGVVSIGEYVCVAEILVMLLFLDGIK 471 (587)
Q Consensus 396 eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~-~Ty--L~aca~~-~~lh~~m~k~~pd~~vynaLI~~~vFd~M~ 471 (587)
++|++.|++..+. .|+. ..+ +..+... ......+ ..|++..
T Consensus 91 ~~A~~~~~~a~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~A~----------------~~~~~al 135 (272)
T 3u4t_A 91 SLAIQQYQAAVDR-------------------DTTRLDMYGQIGSYFYNKGNFPLAI----------------QYMEKQI 135 (272)
T ss_dssp HHHHHHHHHHHHH-------------------STTCTHHHHHHHHHHHHTTCHHHHH----------------HHHGGGC
T ss_pred HHHHHHHHHHHhc-------------------CcccHHHHHHHHHHHHHccCHHHHH----------------HHHHHHh
Confidence 9999999988876 3433 223 2111111 1111100 4444443
Q ss_pred --CC-ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcCCC---HHHH
Q 007864 472 --RP-DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLAGDD---LRKG 543 (587)
Q Consensus 472 --~p-dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~---l~~A 543 (587)
.| +...|..+ -..+-..+++++|.+.|++..+. .|+ ...+ .+-..+...|+ .++|
T Consensus 136 ~~~~~~~~~~~~l---------------~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A 198 (272)
T 3u4t_A 136 RPTTTDPKVFYEL---------------GQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLA 198 (272)
T ss_dssp CSSCCCHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTT
T ss_pred hcCCCcHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHH
Confidence 23 45566666 52344456999999999998874 455 4555 67777777777 8889
Q ss_pred HHHHHHHHHcC
Q 007864 544 GELHHKTLRTG 554 (587)
Q Consensus 544 ~~l~~~M~k~G 554 (587)
...+...++..
T Consensus 199 ~~~~~~a~~~~ 209 (272)
T 3u4t_A 199 KPYYEKLIEVC 209 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888753
No 43
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.74 E-value=0.017 Score=47.10 Aligned_cols=97 Identities=21% Similarity=0.263 Sum_probs=77.4
Q ss_pred CCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHH
Q 007864 380 AKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVA 458 (587)
Q Consensus 380 ~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vy 458 (587)
...|..+ ..|.+.|++++|.+.|+++.+. .|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------------------~~~---------------------------- 41 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------------------DPN---------------------------- 41 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTT----------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------CcC----------------------------
Confidence 4567778 8888999999999999888766 221
Q ss_pred HHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcC
Q 007864 459 EILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAG 537 (587)
Q Consensus 459 naLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~ 537 (587)
+..+|..+ ...|.+.|++++|+.+|+++.... ..+..++ .+...+...
T Consensus 42 ---------------~~~~~~~l---------------a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 42 ---------------NAEAWYNL---------------GNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp ---------------CHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred ---------------cHHHHHHH---------------HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh
Confidence 23456667 788899999999999999988753 2356677 888899999
Q ss_pred CCHHHHHHHHHHHHHcC
Q 007864 538 DDLRKGGELHHKTLRTG 554 (587)
Q Consensus 538 G~l~~A~~l~~~M~k~G 554 (587)
|++++|...+..+.+..
T Consensus 91 ~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 91 GDYDEAIEYYQKALELD 107 (125)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999999988764
No 44
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=96.73 E-value=0.014 Score=58.03 Aligned_cols=173 Identities=8% Similarity=-0.095 Sum_probs=120.0
Q ss_pred ccchhhHHHHHHcCCCCC-CCCCCchhHHHHhhhcCCcHHH--H-HhcccC--CC-CC-cchhh-hhcccCCChhHHHHH
Q 007864 331 KQFSQAHVKAFLSKLDSL-PNFKGMPICLVNEYGTSKNLAK--R-VKKFVE--KD-AK-NWSGP-GSYPSTKSFHTNRLQ 401 (587)
Q Consensus 331 ~~A~~l~~~M~~~Gl~pd-~~tynipiaLI~~y~k~G~l~e--r-Fd~M~~--pd-~v-tYNsL-~gy~r~G~~eeAl~L 401 (587)
++|..++++.++. +.|+ ...|. .+...+.+.|++++ . |++..+ |+ .. .|+.+ ..+.+.|++++|.++
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~---~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 156 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYF---AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHH---HHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence 7899999888863 2343 34677 88899999999999 4 877543 43 33 79999 999999999999999
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCCCCCCH-HHHH-HHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCC---CCChh
Q 007864 402 AKRQLRRFISDVDSSYLPPEGCPNYKPPDD-KFIA-RLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIK---RPDLV 476 (587)
Q Consensus 402 f~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~-~TyL-~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~---~pdvv 476 (587)
|++..+. .|+. ..|+ .+.... + ...+....- .+|+... ..+..
T Consensus 157 ~~~a~~~-------------------~p~~~~~~~~~a~~~~---~-----~~~~~~~A~-----~~~~~al~~~p~~~~ 204 (308)
T 2ond_A 157 FKKARED-------------------ARTRHHVYVTAALMEY---Y-----CSKDKSVAF-----KIFELGLKKYGDIPE 204 (308)
T ss_dssp HHHHHTS-------------------TTCCTHHHHHHHHHHH---H-----TSCCHHHHH-----HHHHHHHHHHTTCHH
T ss_pred HHHHHhc-------------------CCCCHHHHHHHHHHHH---H-----HcCCHHHHH-----HHHHHHHHhCCCcHH
Confidence 9998876 3433 2331 111100 0 000000000 2222221 12567
Q ss_pred hhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCC--HHHH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 477 AWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDY-IEAN--EFTI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 477 TyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~G-i~PD--~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
.|..+ +..+.+.|++++|..+|++..... +.|+ ...| ..+....+.|+.+.|..++..+.+
T Consensus 205 ~~~~~---------------~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 205 YVLAY---------------IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHH---------------HHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHH---------------HHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78888 999999999999999999998863 5664 4566 888888889999999999999987
Q ss_pred cC
Q 007864 553 TG 554 (587)
Q Consensus 553 ~G 554 (587)
..
T Consensus 270 ~~ 271 (308)
T 2ond_A 270 AF 271 (308)
T ss_dssp HT
T ss_pred Hc
Confidence 53
No 45
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.64 E-value=0.034 Score=54.10 Aligned_cols=163 Identities=13% Similarity=-0.010 Sum_probs=112.6
Q ss_pred HHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCC
Q 007864 357 CLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPP 429 (587)
Q Consensus 357 aLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~P 429 (587)
.+-..|.+.|++++ . |++.. ..+...|..+ ..|.+.|++++|++.|++..+. .|
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------------------~~ 68 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL-------------------KM 68 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------------CT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------------------CC
Confidence 45667888999999 5 77654 2456788889 9999999999999999999987 55
Q ss_pred CHH-HH---HHHHHHH------HHHHHHHHhhCc----cHHHHHHHHH------------H-----------HHHhcCC-
Q 007864 430 DDK-FI---ARLWAAR------RDVINGVVSIGE----YVCVAEILVM------------L-----------LFLDGIK- 471 (587)
Q Consensus 430 d~~-Ty---L~aca~~------~~lh~~m~k~~p----d~~vynaLI~------------~-----------~vFd~M~- 471 (587)
+.. .+ -..+... ...+..+.+..| +...+..+.. . +.|++..
T Consensus 69 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 148 (359)
T 3ieg_A 69 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148 (359)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 443 33 2222222 333333333444 3334433311 0 3333332
Q ss_pred --CCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHH
Q 007864 472 --RPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHH 548 (587)
Q Consensus 472 --~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~ 548 (587)
..+...|..+ -..|.+.|++++|++.|++..... ..+..++ .+...+...|+.++|.+.+.
T Consensus 149 ~~~~~~~~~~~~---------------~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 149 VCVWDAELRELR---------------AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp HCTTCHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hCCCchHHHHHH---------------HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2355667777 888999999999999999988753 2355677 88889999999999999999
Q ss_pred HHHHcC
Q 007864 549 KTLRTG 554 (587)
Q Consensus 549 ~M~k~G 554 (587)
...+..
T Consensus 213 ~a~~~~ 218 (359)
T 3ieg_A 213 ECLKLD 218 (359)
T ss_dssp HHHHHC
T ss_pred HHHhhC
Confidence 998764
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.62 E-value=0.015 Score=53.81 Aligned_cols=163 Identities=10% Similarity=-0.057 Sum_probs=97.7
Q ss_pred CCCCCchhHHHHhhhcCCcHHH--H-HhcccC---CCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCC
Q 007864 349 PNFKGMPICLVNEYGTSKNLAK--R-VKKFVE---KDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPE 421 (587)
Q Consensus 349 ~~tynipiaLI~~y~k~G~l~e--r-Fd~M~~---pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~ 421 (587)
...+. .+-..|.+.|++++ . |++..+ .+...|..+ ..|.+.|++++|++.|++..+.
T Consensus 23 ~~~~~---~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------------- 86 (243)
T 2q7f_A 23 SMTGG---QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL------------- 86 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHH---HHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------------
Confidence 44555 66777888899888 5 776542 356788888 9999999999999999999877
Q ss_pred CCCCCCCCCH-HHH--HH-HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcC---CCCChhhhHHHHHhHHhhcCcCHH
Q 007864 422 GCPNYKPPDD-KFI--AR-LWAARRDVINGVVSIGEYVCVAEILVMLLFLDGI---KRPDLVAWSSLLSVHEEWASRRVV 494 (587)
Q Consensus 422 g~~~~~~Pd~-~Ty--L~-aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M---~~pdvvTyNsLI~gy~km~~~dvv 494 (587)
.|+. ..+ +. .+.......... +.|++. ...+...|..+
T Consensus 87 ------~~~~~~~~~~la~~~~~~~~~~~A~----------------~~~~~~~~~~~~~~~~~~~~------------- 131 (243)
T 2q7f_A 87 ------DSSAATAYYGAGNVYVVKEMYKEAK----------------DMFEKALRAGMENGDLFYML------------- 131 (243)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHH----------------HHHHHHHHHTCCSHHHHHHH-------------
T ss_pred ------CCcchHHHHHHHHHHHHhccHHHHH----------------HHHHHHHHhCCCCHHHHHHH-------------
Confidence 4433 333 21 111110000000 112211 12356678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 495 sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
...|.+.|++++|++.|++..... ..+...+ .+...+.+.|++++|...+..+.+..- .+..++..+.
T Consensus 132 --a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 200 (243)
T 2q7f_A 132 --GTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP-GHADAFYNAG 200 (243)
T ss_dssp --HHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred --HHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHH
Confidence 889999999999999999988753 2256677 888999999999999999999988642 2455555554
No 47
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.60 E-value=0.0028 Score=59.67 Aligned_cols=191 Identities=12% Similarity=-0.014 Sum_probs=114.6
Q ss_pred CCCCCccchhhHHHHHHcC-------CCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc-----------CCCCCcch
Q 007864 326 EKDTPKQFSQAHVKAFLSK-------LDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV-----------EKDAKNWS 384 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~G-------l~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~-----------~pd~vtYN 384 (587)
..|+++.|...+.+.++.- -.....++. .+-..|...|++++ . |++.. .....+|+
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLN---ILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH---HHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 3677888888888776521 112244566 78888899999998 4 55432 12356889
Q ss_pred hh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHHHHHHHHhhCccHHHHHH
Q 007864 385 GP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPD---DKFIARLWAARRDVINGVVSIGEYVCVAEI 460 (587)
Q Consensus 385 sL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd---~~TyL~aca~~~~lh~~m~k~~pd~~vyna 460 (587)
.+ ..|.+.|++++|++.|++..+....-. .|+ ........+.. +....+...-...+..
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------~~~~~~~~~~~~~la~~---~~~~g~~~~A~~~~~~ 152 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVL--------------GKFHPDVAKQLNNLALL---CQNQGKAEEVEYYYRR 152 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHH--------------CTTCHHHHHHHHHHHHH---HHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHc--------------CCCChHHHHHHHHHHHH---HHHcCCHHHHHHHHHH
Confidence 99 999999999999999998765400000 122 11111111111 0000000000001111
Q ss_pred HHHHHHHhcCCCC----ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcC----------------
Q 007864 461 LVMLLFLDGIKRP----DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDY---------------- 520 (587)
Q Consensus 461 LI~~~vFd~M~~p----dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~G---------------- 520 (587)
.+ +++.....+ +..+|+.+ -..|.+.|++++|.++|++.....
T Consensus 153 al--~~~~~~~~~~~~~~~~~~~~l---------------a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 215 (283)
T 3edt_B 153 AL--EIYATRLGPDDPNVAKTKNNL---------------ASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIW 215 (283)
T ss_dssp HH--HHHHHHSCTTCHHHHHHHHHH---------------HHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHH
T ss_pred HH--HHHHHhcCCCCHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 11 222222111 34567777 889999999999999999887530
Q ss_pred -------------------------------CCCCH-HHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 521 -------------------------------IEANE-FTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 521 -------------------------------i~PD~-~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
..|+. .++ .+-..+.+.|++++|..+++..++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 216 MHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 12333 355 8888899999999999999887653
No 48
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=96.58 E-value=0.0076 Score=63.08 Aligned_cols=56 Identities=9% Similarity=0.047 Sum_probs=46.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
-..|.+.|++++|++.|++..+.. .-+...+ .+-..+...|++++|.+.+..+++.
T Consensus 351 a~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 351 ACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 888999999999999999988763 2234567 8888899999999999999988764
No 49
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=96.50 E-value=0.0093 Score=56.34 Aligned_cols=172 Identities=12% Similarity=-0.050 Sum_probs=108.0
Q ss_pred CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhcccC------
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSYPST------ 392 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~------ 392 (587)
..|++++|...+...++.. +.+...+. .+-..|.+.|+.++ . |++.. ..+...|..+ ..|.+.
T Consensus 17 ~~g~~~~A~~~~~~al~~~-p~~~~a~~---~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~ 92 (217)
T 2pl2_A 17 ALGRYDAALTLFERALKEN-PQDPEALY---WLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAED 92 (217)
T ss_dssp HTTCHHHHHHHHHHHHTTS-SSCHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSS
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhh
Confidence 4688899999999887643 22344555 67788899999999 5 77654 3356788999 999999
Q ss_pred -----CChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---HHHHHHH-HHHHHHHHhhCccHHHHHHHHH
Q 007864 393 -----KSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---ARLWAAR-RDVINGVVSIGEYVCVAEILVM 463 (587)
Q Consensus 393 -----G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L~aca~~-~~lh~~m~k~~pd~~vynaLI~ 463 (587)
|++++|++.|++..+. .|+.... +..+... ....+. ...|.
T Consensus 93 ~~~~~g~~~~A~~~~~~al~~-------------------~P~~~~~~~~lg~~~~~~g~~~~A-------~~~~~---- 142 (217)
T 2pl2_A 93 RERGKGYLEQALSVLKDAERV-------------------NPRYAPLHLQRGLVYALLGERDKA-------EASLK---- 142 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCHHHH-------HHHHH----
T ss_pred hcccccCHHHHHHHHHHHHHh-------------------CcccHHHHHHHHHHHHHcCChHHH-------HHHHH----
Confidence 9999999999999887 6765443 2111111 000000 00111
Q ss_pred HHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcCCCHH
Q 007864 464 LLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLAGDDLR 541 (587)
Q Consensus 464 ~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~l~ 541 (587)
+..+. . .+...|..+ -..|.+.|++++|+..|++..+. .|+ ...+ .+-..+...|+.+
T Consensus 143 -~al~~-~-~~~~~~~~l---------------a~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 143 -QALAL-E-DTPEIRSAL---------------AELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAE 202 (217)
T ss_dssp -HHHHH-C-CCHHHHHHH---------------HHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-----
T ss_pred -HHHhc-c-cchHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHH
Confidence 11111 1 566778888 88899999999999999998874 465 4556 8888899999999
Q ss_pred HHHHHHHHHH
Q 007864 542 KGGELHHKTL 551 (587)
Q Consensus 542 ~A~~l~~~M~ 551 (587)
+|.+.++...
T Consensus 203 ~A~~~~~~~~ 212 (217)
T 2pl2_A 203 EAARAAALEH 212 (217)
T ss_dssp ----------
T ss_pred HHHHHHHHHh
Confidence 9998877653
No 50
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.45 E-value=0.05 Score=43.51 Aligned_cols=98 Identities=6% Similarity=-0.048 Sum_probs=78.3
Q ss_pred CCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHH
Q 007864 378 KDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVC 456 (587)
Q Consensus 378 pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~ 456 (587)
.+...|..+ ..|.+.|++++|...|++..+. .|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-------------------~~~-------------------------- 38 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL-------------------DPE-------------------------- 38 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH-------------------CCC--------------------------
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-------------------CcC--------------------------
Confidence 356788888 9999999999999999988776 222
Q ss_pred HHHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHH-HHHH
Q 007864 457 VAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN---EFTI-DLCS 532 (587)
Q Consensus 457 vynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD---~~Ty-sLL~ 532 (587)
+...|..+ -..|.+.|++++|++.|++..+. .|+ ...+ .+-.
T Consensus 39 -----------------~~~~~~~~---------------a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 39 -----------------ESKYWLMK---------------GKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAKAD 84 (112)
T ss_dssp -----------------CHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHHHH
T ss_pred -----------------CHHHHHHH---------------HHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHHHH
Confidence 22345556 67788999999999999998765 344 6677 8888
Q ss_pred HHhcC-CCHHHHHHHHHHHHHcC
Q 007864 533 ACLAG-DDLRKGGELHHKTLRTG 554 (587)
Q Consensus 533 ac~~~-G~l~~A~~l~~~M~k~G 554 (587)
.+.+. |+.++|.+.+....+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 89999 99999999999887754
No 51
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.41 E-value=0.025 Score=51.74 Aligned_cols=121 Identities=9% Similarity=-0.010 Sum_probs=91.6
Q ss_pred HHHhhhcCCcHHH--H-HhcccCCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHH
Q 007864 358 LVNEYGTSKNLAK--R-VKKFVEKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKF 433 (587)
Q Consensus 358 LI~~y~k~G~l~e--r-Fd~M~~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~T 433 (587)
+-..|.+.|++++ . |++...++...|..+ ..|.+.|++++|++.|++..+. .|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------------~~~--- 69 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR-------------------DKH--- 69 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTT---
T ss_pred HHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------Ccc---
Confidence 3445667788887 5 777777777788888 8888888888888888877655 222
Q ss_pred HHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHH
Q 007864 434 IARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLF 513 (587)
Q Consensus 434 yL~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf 513 (587)
+...|+.+ -..|.+.|++++|++.|
T Consensus 70 ----------------------------------------~~~~~~~l---------------g~~~~~~~~~~~A~~~~ 94 (213)
T 1hh8_A 70 ----------------------------------------LAVAYFQR---------------GMLYYQTEKYDLAIKDL 94 (213)
T ss_dssp ----------------------------------------CHHHHHHH---------------HHHHHHTTCHHHHHHHH
T ss_pred ----------------------------------------chHHHHHH---------------HHHHHHcccHHHHHHHH
Confidence 33456666 77889999999999999
Q ss_pred HHHHhcC--------------CCCCH-HHH-HHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 007864 514 QTMRVDY--------------IEANE-FTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555 (587)
Q Consensus 514 ~eM~~~G--------------i~PD~-~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~ 555 (587)
++..+.. ..|+. ..+ .+-.++.+.|+.++|.+.++...+..-
T Consensus 95 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 95 KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 9988742 22222 456 888889999999999999999987653
No 52
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.18 E-value=0.051 Score=49.12 Aligned_cols=149 Identities=13% Similarity=0.003 Sum_probs=101.8
Q ss_pred HHHHhhhcCCcHHH--H-HhcccC---CCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCC
Q 007864 357 CLVNEYGTSKNLAK--R-VKKFVE---KDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPP 429 (587)
Q Consensus 357 aLI~~y~k~G~l~e--r-Fd~M~~---pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~P 429 (587)
.+-..+.+.|++++ . |++..+ .+...|..+ ..|.+.|++++|++.|++.... .|
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-------------------~p 71 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE-------------------YQ 71 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-------------------GC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-------------------cC
Confidence 45567788999999 5 877653 466788999 9999999999999999988766 66
Q ss_pred CHHHH-HHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCC--CC-ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCC
Q 007864 430 DDKFI-ARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIK--RP-DLVAWSSLLSVHEEWASRRVVLVISGFSLNGW 505 (587)
Q Consensus 430 d~~Ty-L~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~--~p-dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~ 505 (587)
|...+ +.+..... ....... ++ ..|++.. .| |...|..+ -..|.+.|+
T Consensus 72 ~~~~~~~~~~~~~~------~~~~~~~----a~---~~~~~al~~~P~~~~~~~~l---------------a~~~~~~g~ 123 (176)
T 2r5s_A 72 DNSYKSLIAKLELH------QQAAESP----EL---KRLEQELAANPDNFELACEL---------------AVQYNQVGR 123 (176)
T ss_dssp CHHHHHHHHHHHHH------HHHTSCH----HH---HHHHHHHHHSTTCHHHHHHH---------------HHHHHHTTC
T ss_pred ChHHHHHHHHHHHH------hhcccch----HH---HHHHHHHHhCCCCHHHHHHH---------------HHHHHHccc
Confidence 44332 22211100 0000000 00 1222211 23 46677777 888999999
Q ss_pred HHHHHHHHHHHHhcCCCC-CHHHH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 506 YAEALGLFQTMRVDYIEA-NEFTI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 506 ~~eAl~Lf~eM~~~Gi~P-D~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
+++|.+.|++..+..-.+ +...+ .+...+...|+.++|...+...+.
T Consensus 124 ~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 124 DEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999988764332 35577 888999999999999998887654
No 53
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.15 E-value=0.0062 Score=65.18 Aligned_cols=147 Identities=11% Similarity=-0.039 Sum_probs=106.2
Q ss_pred CCCCCC-ccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc--CCCCCcchhh-hhcccC-----
Q 007864 325 PEKDTP-KQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV--EKDAKNWSGP-GSYPST----- 392 (587)
Q Consensus 325 c~~g~l-~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~--~pd~vtYNsL-~gy~r~----- 392 (587)
...|++ ++|.+.+.+.++.. +-+...|. .|-..|.+.|++++ . |++.. .|+...|..+ ..|.+.
T Consensus 113 ~~~g~~~~~A~~~~~~al~~~-p~~~~a~~---~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~ 188 (474)
T 4abn_A 113 NVTPDYSPEAEVLLSKAVKLE-PELVEAWN---QLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSG 188 (474)
T ss_dssp TSSSSCCHHHHHHHHHHHHHC-TTCHHHHH---HHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCH
T ss_pred HhccccHHHHHHHHHHHHhhC-CCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCCh
Confidence 368889 99999999988764 22345667 78888999999999 5 76654 3677888888 999998
Q ss_pred ----CChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHh
Q 007864 393 ----KSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLD 468 (587)
Q Consensus 393 ----G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd 468 (587)
|++++|++.|++..+. .|+.
T Consensus 189 ~~~~g~~~~A~~~~~~al~~-------------------~p~~------------------------------------- 212 (474)
T 4abn_A 189 DEHSRHVMDSVRQAKLAVQM-------------------DVLD------------------------------------- 212 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------------------CTTC-------------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHh-------------------CCCC-------------------------------------
Confidence 9999999999988876 3433
Q ss_pred cCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCC----CHHHH-HHHHHHh
Q 007864 469 GIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLN--------GWYAEALGLFQTMRVDYIEA----NEFTI-DLCSACL 535 (587)
Q Consensus 469 ~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~--------G~~~eAl~Lf~eM~~~Gi~P----D~~Ty-sLL~ac~ 535 (587)
...|+.+ -..|.+. |++++|++.|++..+. .| +...| .+-.++.
T Consensus 213 ------~~~~~~l---------------g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~ 269 (474)
T 4abn_A 213 ------GRSWYIL---------------GNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHK 269 (474)
T ss_dssp ------HHHHHHH---------------HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHH
T ss_pred ------HHHHHHH---------------HHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHH
Confidence 2234444 4445555 6677787777776664 34 55566 7777777
Q ss_pred cCCCHHHHHHHHHHHHHcC
Q 007864 536 AGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 536 ~~G~l~~A~~l~~~M~k~G 554 (587)
..|++++|.+.++...+..
T Consensus 270 ~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 270 YEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 7788888877777776643
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.08 E-value=0.029 Score=53.10 Aligned_cols=200 Identities=7% Similarity=-0.087 Sum_probs=131.4
Q ss_pred CchHHHHHHHHHHhcCCCCceE-EeccccCC-CCCCCCccchhhHHHHHHcCCCCCCCC----CCchhHHHHhhhcCCcH
Q 007864 295 FFMEDMEEQMLNIKEKFEPVGF-VVGFPVGS-PEKDTPKQFSQAHVKAFLSKLDSLPNF----KGMPICLVNEYGTSKNL 368 (587)
Q Consensus 295 k~~eal~~~~~m~~~G~~Pd~~-Ty~sLL~a-c~~g~l~~A~~l~~~M~~~Gl~pd~~t----ynipiaLI~~y~k~G~l 368 (587)
...+++..+.+.+.. .|+.. .+..+-.. ...|+.++|...+...++.. ++... |. .+-..|.+.|+.
T Consensus 18 ~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~---~lg~~~~~~~~~ 90 (272)
T 3u4t_A 18 NYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFE---YYGKILMKKGQD 90 (272)
T ss_dssp CHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHH---HHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHH---HHHHHHHHcccH
Confidence 445555555544432 34322 33333333 36899999999999998843 34333 56 788889999999
Q ss_pred HH--H-Hhccc---CCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---HH-H
Q 007864 369 AK--R-VKKFV---EKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---AR-L 437 (587)
Q Consensus 369 ~e--r-Fd~M~---~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L~-a 437 (587)
++ . |++.. ..+...|..+ ..|.+.|++++|++.|++..+. .|+.... +. .
T Consensus 91 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------------------~~~~~~~~~~l~~~ 151 (272)
T 3u4t_A 91 SLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-------------------TTTDPKVFYELGQA 151 (272)
T ss_dssp HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-------------------SCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-------------------CCCcHHHHHHHHHH
Confidence 99 5 76543 3466789999 9999999999999999988766 5554433 22 1
Q ss_pred -HHHH--HHHHHHHHhhCccHHHHHHHHHHHHHhcCC--CC-ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCC---HHH
Q 007864 438 -WAAR--RDVINGVVSIGEYVCVAEILVMLLFLDGIK--RP-DLVAWSSLLSVHEEWASRRVVLVISGFSLNGW---YAE 508 (587)
Q Consensus 438 -ca~~--~~lh~~m~k~~pd~~vynaLI~~~vFd~M~--~p-dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~---~~e 508 (587)
+... .... +.|++.. .| +...|..+ -..+...|+ .++
T Consensus 152 ~~~~~~~~~A~-------------------~~~~~a~~~~p~~~~~~~~~---------------~~~~~~~~~~~~~~~ 197 (272)
T 3u4t_A 152 YYYNKEYVKAD-------------------SSFVKVLELKPNIYIGYLWR---------------ARANAAQDPDTKQGL 197 (272)
T ss_dssp HHHTTCHHHHH-------------------HHHHHHHHHSTTCHHHHHHH---------------HHHHHHHSTTCSSCT
T ss_pred HHHHHHHHHHH-------------------HHHHHHHHhCccchHHHHHH---------------HHHHHHcCcchhhHH
Confidence 1111 1111 1122111 12 34566666 667777777 778
Q ss_pred HHHHHHHHHhc-CCCCCH------HHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 509 ALGLFQTMRVD-YIEANE------FTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 509 Al~Lf~eM~~~-Gi~PD~------~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
|...|++..+. .-.|+. ..| .+-..+.+.|+.++|.+.++...+..
T Consensus 198 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 198 AKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp THHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 88888887654 233442 466 78888889999999999999998754
No 55
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.79 E-value=0.16 Score=44.14 Aligned_cols=134 Identities=10% Similarity=-0.028 Sum_probs=90.4
Q ss_pred Ccchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCH-HHH--HH-HHHHHHHHHHHHHhhCccH
Q 007864 381 KNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDD-KFI--AR-LWAARRDVINGVVSIGEYV 455 (587)
Q Consensus 381 vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~-~Ty--L~-aca~~~~lh~~m~k~~pd~ 455 (587)
..|..+ ..|.+.|++++|++.|+++.+. .|+. ..+ +. .+..........
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~A~------- 62 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA-------------------DAFDVDVALHLGIAYVKTGAVDRGT------- 62 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT-------------------TSCCHHHHHHHHHHHHHTTCHHHHH-------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------------------CccChHHHHHHHHHHHHcCCHHHHH-------
Confidence 356677 8889999999999999988766 4433 333 11 111110000000
Q ss_pred HHHHHHHHHHHHhcC---CCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHH
Q 007864 456 CVAEILVMLLFLDGI---KRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLC 531 (587)
Q Consensus 456 ~vynaLI~~~vFd~M---~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL 531 (587)
..|++. ...+...|..+ ...|.+.|++++|.+.|++..... ..+...+ .+.
T Consensus 63 ---------~~~~~~~~~~~~~~~~~~~~---------------a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 117 (186)
T 3as5_A 63 ---------ELLERSLADAPDNVKVATVL---------------GLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLG 117 (186)
T ss_dssp ---------HHHHHHHHHCTTCHHHHHHH---------------HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ---------HHHHHHHhcCCCCHHHHHHH---------------HHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHH
Confidence 111111 12356678888 889999999999999999988763 2356677 888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 532 SACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 532 ~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
..+...|++++|...+..+.+..- .+..++..+.
T Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 151 (186)
T 3as5_A 118 VALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIA 151 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHH
Confidence 999999999999999999988752 2445555554
No 56
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=95.75 E-value=0.051 Score=62.11 Aligned_cols=144 Identities=17% Similarity=0.073 Sum_probs=95.0
Q ss_pred HHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCC
Q 007864 357 CLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPP 429 (587)
Q Consensus 357 aLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~P 429 (587)
.|=..|.+.|++++ . |++.. ..+...|+.+ ..|.+.|++++|++.|++-.+. .|
T Consensus 14 nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-------------------~P 74 (723)
T 4gyw_A 14 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-------------------SP 74 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------CC
Confidence 55566777778777 4 66533 2345677788 8888888888888888877766 56
Q ss_pred CHHHH---HHHHHHH-HHHHHHHHhhCccHHHHHHHHHHHHHhcCC--CC-ChhhhHHHHHhHHhhcCcCHHHHHHHHHh
Q 007864 430 DDKFI---ARLWAAR-RDVINGVVSIGEYVCVAEILVMLLFLDGIK--RP-DLVAWSSLLSVHEEWASRRVVLVISGFSL 502 (587)
Q Consensus 430 d~~Ty---L~aca~~-~~lh~~m~k~~pd~~vynaLI~~~vFd~M~--~p-dvvTyNsLI~gy~km~~~dvvsLI~gy~k 502 (587)
+.... +..+... .+..+.+ +.|++.. .| +...|+.| -..|.+
T Consensus 75 ~~~~a~~nLg~~l~~~g~~~~A~----------------~~~~kAl~l~P~~~~a~~~L---------------g~~~~~ 123 (723)
T 4gyw_A 75 TFADAYSNMGNTLKEMQDVQGAL----------------QCYTRAIQINPAFADAHSNL---------------ASIHKD 123 (723)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHH----------------HHHHHHHHHCTTCHHHHHHH---------------HHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHH----------------HHHHHHHHhCCCCHHHHHHH---------------HHHHHH
Confidence 54332 2111111 0000000 1111111 23 56678888 888999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCH-HHH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 503 NGWYAEALGLFQTMRVDYIEANE-FTI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 503 ~G~~~eAl~Lf~eM~~~Gi~PD~-~Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
.|++++|++.|++-.+ +.||. ..| .+...+...|++++|.+.+++.++
T Consensus 124 ~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 124 SGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999776 45765 455 889999999999999888877654
No 57
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=95.44 E-value=0.048 Score=58.97 Aligned_cols=56 Identities=9% Similarity=-0.053 Sum_probs=41.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcC---CCHHHHHHHHHHHHHcC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLAG---DDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~---G~l~~A~~l~~~M~k~G 554 (587)
-..|.+.|++++|.+.|++..+. .|+ ...+ .+...+... |+.++|.+.++..++.+
T Consensus 98 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 98 GHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 67788888888888888887664 343 4555 777777777 88888888888877754
No 58
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=95.42 E-value=0.16 Score=41.55 Aligned_cols=68 Identities=9% Similarity=0.003 Sum_probs=53.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCC--CCC----HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYI--EAN----EFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi--~PD----~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
-..|.+.|++++|...|++.....- .++ ..+| .+-..+.+.|++++|.+.+....+.. |+......+.
T Consensus 45 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~ 119 (131)
T 1elr_A 45 AAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 7778899999999999999876532 222 6677 88888999999999999999998864 5655555554
No 59
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=95.37 E-value=0.13 Score=42.41 Aligned_cols=97 Identities=14% Similarity=0.004 Sum_probs=74.5
Q ss_pred CCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHH
Q 007864 379 DAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCV 457 (587)
Q Consensus 379 d~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~v 457 (587)
+...|..+ ..|.+.|++++|++.|++..+. .|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------------------~~~--------------------------- 48 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR-------------------NPK--------------------------- 48 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-------------------CTT---------------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------------------CCC---------------------------
Confidence 44567778 8888999999999999888765 222
Q ss_pred HHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH-HHHHHHh
Q 007864 458 AEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEA-NEFTI-DLCSACL 535 (587)
Q Consensus 458 ynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~P-D~~Ty-sLL~ac~ 535 (587)
+...|..+ -..|.+.|++++|++.|++.... .| +...+ .+-..+.
T Consensus 49 ----------------~~~~~~~l---------------a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 49 ----------------DAKLYSNR---------------AACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKAAALE 95 (133)
T ss_dssp ----------------CHHHHHHH---------------HHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred ----------------cHHHHHHH---------------HHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHHHHHH
Confidence 23345556 67788889999999999988775 34 45666 8888888
Q ss_pred cCCCHHHHHHHHHHHHHcC
Q 007864 536 AGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 536 ~~G~l~~A~~l~~~M~k~G 554 (587)
+.|++++|.+.+....+..
T Consensus 96 ~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHHHHhC
Confidence 9999999999999887753
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.33 E-value=0.04 Score=51.34 Aligned_cols=55 Identities=9% Similarity=0.035 Sum_probs=35.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHH-HHHHHHhcCCCH---------------------------HHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEAN---EFTI-DLCSACLAGDDL---------------------------RKGGE 545 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD---~~Ty-sLL~ac~~~G~l---------------------------~~A~~ 545 (587)
=..+.+.|++++|++.|++..+ +.|+ ...| .+-..+...|.. ++|..
T Consensus 124 g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~ 201 (228)
T 4i17_A 124 GQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVD 201 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888888887665 3565 2344 555555555555 77777
Q ss_pred HHHHHHHc
Q 007864 546 LHHKTLRT 553 (587)
Q Consensus 546 l~~~M~k~ 553 (587)
.++...+.
T Consensus 202 ~~~~a~~l 209 (228)
T 4i17_A 202 YLGEAVTL 209 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 77777664
No 61
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=95.25 E-value=0.069 Score=50.95 Aligned_cols=164 Identities=15% Similarity=0.022 Sum_probs=99.2
Q ss_pred HHHHhhhcCCcHHH--H-HhcccC-----------CCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCC--CCCCCCC
Q 007864 357 CLVNEYGTSKNLAK--R-VKKFVE-----------KDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISD--VDSSYLP 419 (587)
Q Consensus 357 aLI~~y~k~G~l~e--r-Fd~M~~-----------pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~G--v~~~~~~ 419 (587)
.+-..|...|++++ . |++..+ ....+|+.+ ..|.+.|++++|++.|++..+....- -
T Consensus 32 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------ 105 (311)
T 3nf1_A 32 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK------ 105 (311)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC------
Confidence 67778889999998 4 655432 134678889 99999999999999999887540000 1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcC--C--CCChhhhHHHHHhHHhhcCcCHHH
Q 007864 420 PEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGI--K--RPDLVAWSSLLSVHEEWASRRVVL 495 (587)
Q Consensus 420 ~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M--~--~pdvvTyNsLI~gy~km~~~dvvs 495 (587)
-.|+........+.. +....+...-...+...+ ++++.. . ......|+.+
T Consensus 106 -------~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~~~~~l-------------- 159 (311)
T 3nf1_A 106 -------DHPAVAATLNNLAVL---YGKRGKYKEAEPLCKRAL--EIREKVLGKDHPDVAKQLNNL-------------- 159 (311)
T ss_dssp -------TCHHHHHHHHHHHHH---HHTTTCHHHHHHHHHHHH--HHHHHHHCTTCHHHHHHHHHH--------------
T ss_pred -------CChHHHHHHHHHHHH---HHHcCcHHHHHHHHHHHH--HHHHHhcCCCChHHHHHHHHH--------------
Confidence 011111111111111 000000000000111111 222221 1 1134567777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc------CCCCCH-HHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 496 VISGFSLNGWYAEALGLFQTMRVD------YIEANE-FTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 496 LI~gy~k~G~~~eAl~Lf~eM~~~------Gi~PD~-~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
-..|.+.|++++|+++|++.... +-.|+. .++ .+-..+...|++++|.+.+..+.+.
T Consensus 160 -a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 160 -ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp -HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88899999999999999998775 334444 355 8888899999999999999998863
No 62
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.18 E-value=0.18 Score=42.39 Aligned_cols=97 Identities=9% Similarity=-0.060 Sum_probs=74.0
Q ss_pred CCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHH
Q 007864 378 KDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVC 456 (587)
Q Consensus 378 pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~ 456 (587)
.+...|..+ ..|.+.|++++|++.|++..+. .|+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------------------~~~-------------------------- 41 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR-------------------NPL-------------------------- 41 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTT--------------------------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-------------------CcC--------------------------
Confidence 355677778 8888899999999998887766 222
Q ss_pred HHHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHH
Q 007864 457 VAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSAC 534 (587)
Q Consensus 457 vynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac 534 (587)
+...|..+ -..|.+.|++++|+..|++..... |+ ...| .+-.++
T Consensus 42 -----------------~~~~~~~l---------------~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 42 -----------------VAVYYTNR---------------ALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQCQ 87 (137)
T ss_dssp -----------------CHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred -----------------cHHHHHHH---------------HHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHHHHHH
Confidence 23346666 677888999999999999887753 44 5566 888888
Q ss_pred hcCCCHHHHHHHHHHHHHc
Q 007864 535 LAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 535 ~~~G~l~~A~~l~~~M~k~ 553 (587)
...|++++|...+...++.
T Consensus 88 ~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 8999999999998887754
No 63
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=95.08 E-value=0.19 Score=53.69 Aligned_cols=183 Identities=10% Similarity=-0.053 Sum_probs=101.7
Q ss_pred cchhhHHHHHHcCCCCCCCCCCchhHHHHhhhc-------CCcHH-------H--H-Hhccc---CC-CCCcchhh-hhc
Q 007864 332 QFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGT-------SKNLA-------K--R-VKKFV---EK-DAKNWSGP-GSY 389 (587)
Q Consensus 332 ~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k-------~G~l~-------e--r-Fd~M~---~p-d~vtYNsL-~gy 389 (587)
.+..++++.++.. +-+...|. .+...+.+ .|+++ + . |++-. .| +...|..+ ..+
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~---~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~ 331 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWY---EAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 331 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHH---HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHH---HHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4555677766542 22344454 55555554 67775 4 3 55433 23 46678888 888
Q ss_pred ccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHH--HH---HHHHHHH------HHHHHHHHhhCc---cH
Q 007864 390 PSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDK--FI---ARLWAAR------RDVINGVVSIGE---YV 455 (587)
Q Consensus 390 ~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~--Ty---L~aca~~------~~lh~~m~k~~p---d~ 455 (587)
.+.|++++|.++|++..+. .|+.. .| .....+. +.++....+..| ..
T Consensus 332 ~~~g~~~~A~~~~~~al~~-------------------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~ 392 (530)
T 2ooe_A 332 ESRMKYEKVHSIYNRLLAI-------------------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV 392 (530)
T ss_dssp HHTTCHHHHHHHHHHHHHS-------------------SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHH
T ss_pred HhcCCHHHHHHHHHHHhCc-------------------cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHH
Confidence 8889999999999988876 56543 34 2222111 333333333111 22
Q ss_pred HHHHHHHHH----------HHHhcCC--CC-ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcC-C
Q 007864 456 CVAEILVML----------LFLDGIK--RP-DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDY-I 521 (587)
Q Consensus 456 ~vynaLI~~----------~vFd~M~--~p-dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~G-i 521 (587)
....+++.. .+|+... .| +...|..+ +..+.+.|+.++|..+|++....+ .
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~---------------~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAY---------------IDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHH---------------HHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHH---------------HHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 222333321 3333322 13 45566666 677777777777777777766543 2
Q ss_pred CCC--HHHH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 522 EAN--EFTI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 522 ~PD--~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
.|+ ...| ..+.-....|+.+.+..+...+.+
T Consensus 458 ~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 458 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 332 2345 556666667777777777766654
No 64
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=95.01 E-value=0.27 Score=39.37 Aligned_cols=56 Identities=9% Similarity=-0.100 Sum_probs=45.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEA-NEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~P-D~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
-..|.+.|++++|.+.+++..... | +...+ .+-.++...|+.++|.+.+....+..
T Consensus 45 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 45 SAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 667788899999999999887653 4 45666 88888889999999999999887754
No 65
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=94.89 E-value=0.19 Score=45.62 Aligned_cols=97 Identities=7% Similarity=-0.057 Sum_probs=79.4
Q ss_pred CCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHH
Q 007864 379 DAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCV 457 (587)
Q Consensus 379 d~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~v 457 (587)
+...|..+ ..|.+.|++++|++.|++.... .|+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-------------------~P~~-------------------------- 69 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY-------------------DFYN-------------------------- 69 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTTC--------------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------CCCC--------------------------
Confidence 45578888 9999999999999999998877 4433
Q ss_pred HHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHh
Q 007864 458 AEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACL 535 (587)
Q Consensus 458 ynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~ 535 (587)
...|..+ =..|.+.|++++|++.|++..+. .|+ ...| .+-.++.
T Consensus 70 -----------------~~~~~~l---------------g~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 70 -----------------VDYIMGL---------------AAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQCQL 115 (151)
T ss_dssp -----------------HHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHHHHH
T ss_pred -----------------HHHHHHH---------------HHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHH
Confidence 3446667 77788999999999999998874 454 4566 8888899
Q ss_pred cCCCHHHHHHHHHHHHHcC
Q 007864 536 AGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 536 ~~G~l~~A~~l~~~M~k~G 554 (587)
+.|+.++|...++..++..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999998864
No 66
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=94.84 E-value=0.098 Score=54.87 Aligned_cols=61 Identities=20% Similarity=0.115 Sum_probs=45.5
Q ss_pred ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCH-HHH-HHHHHHhcCC---------CH
Q 007864 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNG--WYAEALGLFQTMRVDYIEANE-FTI-DLCSACLAGD---------DL 540 (587)
Q Consensus 474 dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G--~~~eAl~Lf~eM~~~Gi~PD~-~Ty-sLL~ac~~~G---------~l 540 (587)
|...|+.+ -..|.+.| ++++|++.++++ ...|+. ..+ .+...+.+.| .+
T Consensus 273 ~~~a~~~l---------------~~ll~~~g~~~~~~a~~~~~~~---~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~ 334 (382)
T 2h6f_A 273 NESAWNYL---------------KGILQDRGLSKYPNLLNQLLDL---QPSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 334 (382)
T ss_dssp CHHHHHHH---------------HHHHTTTCGGGCHHHHHHHHHH---TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred CHHHHHHH---------------HHHHHccCccchHHHHHHHHHh---ccCCCCHHHHHHHHHHHHHHhcccccchHHHH
Confidence 55677777 77788888 689999999987 345554 555 7777887764 36
Q ss_pred HHHHHHHHHH-HH
Q 007864 541 RKGGELHHKT-LR 552 (587)
Q Consensus 541 ~~A~~l~~~M-~k 552 (587)
++|.++++.+ ++
T Consensus 335 ~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 335 NKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 8999999988 54
No 67
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=94.82 E-value=0.28 Score=42.30 Aligned_cols=94 Identities=12% Similarity=0.091 Sum_probs=73.9
Q ss_pred Ccchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHHH
Q 007864 381 KNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAE 459 (587)
Q Consensus 381 vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vyn 459 (587)
..|+-. ..|.+.|++++|++.|++..+. .|+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~-------------------~p~----------------------------- 45 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR-------------------DPE----------------------------- 45 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTT-----------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------CCC-----------------------------
Confidence 456777 8899999999999999988766 333
Q ss_pred HHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcC
Q 007864 460 ILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLAG 537 (587)
Q Consensus 460 aLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~ 537 (587)
+...|..+ -..|.+.|++++|++.|++-.+. .|+ ...| .+-.++...
T Consensus 46 --------------~~~~~~~~---------------~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 46 --------------NAILYSNR---------------AACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp --------------CHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred --------------CHHHHHHH---------------hhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHC
Confidence 23446666 67788899999999999987764 444 4566 888888999
Q ss_pred CCHHHHHHHHHHHHHc
Q 007864 538 DDLRKGGELHHKTLRT 553 (587)
Q Consensus 538 G~l~~A~~l~~~M~k~ 553 (587)
|++++|.+.++..++.
T Consensus 95 ~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 95 REWSKAQRAYEDALQV 110 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998875
No 68
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.73 E-value=0.25 Score=47.17 Aligned_cols=181 Identities=12% Similarity=-0.097 Sum_probs=114.2
Q ss_pred CCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhc----CCcHHH--H-Hhccc-CCCCCcchhh-hhccc----CC
Q 007864 327 KDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGT----SKNLAK--R-VKKFV-EKDAKNWSGP-GSYPS----TK 393 (587)
Q Consensus 327 ~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k----~G~l~e--r-Fd~M~-~pd~vtYNsL-~gy~r----~G 393 (587)
.|+.++|.+.+.+..+.+ +...+. .|-..|.+ .|+.++ . |++.. ..+...|..+ ..|.+ .|
T Consensus 19 ~~~~~~A~~~~~~a~~~~---~~~a~~---~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 92 (273)
T 1ouv_A 19 EKDFTQAKKYFEKACDLK---ENSGCF---NLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQ 92 (273)
T ss_dssp TTCHHHHHHHHHHHHHTT---CHHHHH---HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHH---HHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCccc
Confidence 457788888888887733 233444 55566666 888888 4 66543 2466778888 88888 89
Q ss_pred ChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH--HHH-HHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcC
Q 007864 394 SFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI--ARL-WAARRDVINGVVSIGEYVCVAEILVMLLFLDGI 470 (587)
Q Consensus 394 ~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty--L~a-ca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M 470 (587)
++++|++.|++-.+. +. ...+ +.. +.+. .....|..- ++ ..|++.
T Consensus 93 ~~~~A~~~~~~a~~~---~~-----------------~~a~~~lg~~~~~~-------~~~~~~~~~--A~---~~~~~a 140 (273)
T 1ouv_A 93 NTNKALQYYSKACDL---KY-----------------AEGCASLGGIYHDG-------KVVTRDFKK--AV---EYFTKA 140 (273)
T ss_dssp CHHHHHHHHHHHHHT---TC-----------------HHHHHHHHHHHHHC-------SSSCCCHHH--HH---HHHHHH
T ss_pred CHHHHHHHHHHHHHc---CC-----------------ccHHHHHHHHHHcC-------CCcccCHHH--HH---HHHHHH
Confidence 999999999887766 33 1222 111 1110 000000000 00 111111
Q ss_pred C-CCChhhhHHHHHhHHhhcCcCHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhc----CCCH
Q 007864 471 K-RPDLVAWSSLLSVHEEWASRRVVLVISGFSL----NGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLA----GDDL 540 (587)
Q Consensus 471 ~-~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k----~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~----~G~l 540 (587)
. ..+...++.+ -..|.+ .++.++|++.|++-.+.+ +...+ .+-..+.+ .++.
T Consensus 141 ~~~~~~~a~~~l---------------g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~ 202 (273)
T 1ouv_A 141 CDLNDGDGCTIL---------------GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF 202 (273)
T ss_dssp HHTTCHHHHHHH---------------HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred HhcCcHHHHHHH---------------HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccH
Confidence 1 1255566666 667777 899999999999988765 45667 77788888 9999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 541 RKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 541 ~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
++|.+.++...+.|- ...+..|.
T Consensus 203 ~~A~~~~~~a~~~~~---~~a~~~l~ 225 (273)
T 1ouv_A 203 KEALARYSKACELEN---GGGCFNLG 225 (273)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred HHHHHHHHHHHhCCC---HHHHHHHH
Confidence 999999999998763 34444443
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=94.71 E-value=0.38 Score=47.48 Aligned_cols=180 Identities=9% Similarity=-0.001 Sum_probs=114.0
Q ss_pred ccchhhHHHHHHcCCCCCCCCCCchhHHHHhhh-------cCCcH-------HH--H-Hhccc---CC-CCCcchhh-hh
Q 007864 331 KQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYG-------TSKNL-------AK--R-VKKFV---EK-DAKNWSGP-GS 388 (587)
Q Consensus 331 ~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~-------k~G~l-------~e--r-Fd~M~---~p-d~vtYNsL-~g 388 (587)
+.|..++++.++.. +-+...|. .+...+. +.|++ ++ . |++.. .| +...|..+ ..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~---~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWY---EAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHH---HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHH---HHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 56777888887652 23344555 5555554 35775 55 4 66532 24 45589999 99
Q ss_pred cccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHH--HH---HHHHHHHHHHHHHHHhhCccHHHHHHHHH
Q 007864 389 YPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDK--FI---ARLWAARRDVINGVVSIGEYVCVAEILVM 463 (587)
Q Consensus 389 y~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~--Ty---L~aca~~~~lh~~m~k~~pd~~vynaLI~ 463 (587)
+.+.|++++|.++|++..+. .|+.. .| ...+.+...+....
T Consensus 109 ~~~~~~~~~A~~~~~~al~~-------------------~p~~~~~~~~~~~~~~~~~~~~~~A~--------------- 154 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLAI-------------------EDIDPTLVYIQYMKFARRAEGIKSGR--------------- 154 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTS-------------------SSSCTHHHHHHHHHHHHHHHCHHHHH---------------
T ss_pred HHhcCCHHHHHHHHHHHHhc-------------------cccCccHHHHHHHHHHHHhcCHHHHH---------------
Confidence 99999999999999999876 66543 34 22221111000000
Q ss_pred HHHHhcCCC--C-ChhhhHHHHHhHHhhcCcCHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcC
Q 007864 464 LLFLDGIKR--P-DLVAWSSLLSVHEEWASRRVVLVISG-FSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLAG 537 (587)
Q Consensus 464 ~~vFd~M~~--p-dvvTyNsLI~gy~km~~~dvvsLI~g-y~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~ 537 (587)
.+|++..+ | +...|... ... +...|+.++|.++|++..+. .|+ ...| .+...+.+.
T Consensus 155 -~~~~~a~~~~p~~~~~~~~~---------------a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~ 216 (308)
T 2ond_A 155 -MIFKKAREDARTRHHVYVTA---------------ALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHL 216 (308)
T ss_dssp -HHHHHHHTSTTCCTHHHHHH---------------HHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTT
T ss_pred -HHHHHHHhcCCCCHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHC
Confidence 23333221 2 23334333 222 22369999999999998764 344 4556 888899999
Q ss_pred CCHHHHHHHHHHHHHcC-CCC--CHHHHHHHH
Q 007864 538 DDLRKGGELHHKTLRTG-LHH--TEMKAVALG 566 (587)
Q Consensus 538 G~l~~A~~l~~~M~k~G-~~p--d~~vynaLI 566 (587)
|+.++|..+++..++.. +.| ....|..++
T Consensus 217 g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~ 248 (308)
T 2ond_A 217 NEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 248 (308)
T ss_dssp CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 99999999999999974 565 456777665
No 70
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=94.71 E-value=0.38 Score=39.12 Aligned_cols=66 Identities=15% Similarity=0.034 Sum_probs=48.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaL 565 (587)
-..|.+.|++++|++.+++.... .|+ ...+ .+-..+.+.|+.++|...+....+..- .+...+..+
T Consensus 53 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l 120 (131)
T 2vyi_A 53 AAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP-DNETYKSNL 120 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHH
T ss_pred HHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHH
Confidence 77788889999999999887765 344 5566 777888899999999999988887642 133444443
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=94.48 E-value=0.16 Score=45.35 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=30.4
Q ss_pred ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 007864 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI 528 (587)
Q Consensus 474 dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty 528 (587)
+..+|..+ -..|.+.|++++|++.|++-.+ +.|+...|
T Consensus 140 ~~~~~~~l---------------g~~~~~~g~~~~A~~~~~~al~--~~p~~a~~ 177 (184)
T 3vtx_A 140 FIRAYQSI---------------GLAYEGKGLRDEAVKYFKKALE--KEEKKAKY 177 (184)
T ss_dssp CHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHH--TTHHHHHH
T ss_pred hhhHHHHH---------------HHHHHHCCCHHHHHHHHHHHHh--CCccCHHH
Confidence 56678888 8899999999999999998765 35665544
No 72
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=94.40 E-value=0.45 Score=39.83 Aligned_cols=55 Identities=11% Similarity=-0.005 Sum_probs=45.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
-..|.+.|++++|++.|++..+. .|+ ...| .+-.++...|++++|.+.+....+.
T Consensus 45 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 45 AAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 77788999999999999987764 354 4566 8888888999999999999888765
No 73
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.33 E-value=0.21 Score=47.70 Aligned_cols=173 Identities=17% Similarity=0.021 Sum_probs=118.4
Q ss_pred CCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhc----CCcHHH--H-Hhccc-CCCCCcchhh-hhccc----CC
Q 007864 327 KDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGT----SKNLAK--R-VKKFV-EKDAKNWSGP-GSYPS----TK 393 (587)
Q Consensus 327 ~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k----~G~l~e--r-Fd~M~-~pd~vtYNsL-~gy~r----~G 393 (587)
.++.++|...+.+..+.+ +...+. .|-..|.+ .|+.++ . |++.. ..+...|..+ ..|.+ .|
T Consensus 55 ~~~~~~A~~~~~~a~~~~---~~~a~~---~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN---YSNGCH---LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHH---HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHH---HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCccc
Confidence 788999999999998876 445555 66667777 899998 5 66543 3466788889 88988 99
Q ss_pred ChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH-HHH-HHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCC
Q 007864 394 SFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI-ARL-WAARRDVINGVVSIGEYVCVAEILVMLLFLDGIK 471 (587)
Q Consensus 394 ~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty-L~a-ca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~ 471 (587)
++++|++.|++-.+. +- ....+ +.. +.+. .....|..- ++ ..|+...
T Consensus 129 ~~~~A~~~~~~a~~~---~~----------------~~a~~~lg~~~~~~-------~~~~~~~~~--A~---~~~~~a~ 177 (273)
T 1ouv_A 129 DFKKAVEYFTKACDL---ND----------------GDGCTILGSLYDAG-------RGTPKDLKK--AL---ASYDKAC 177 (273)
T ss_dssp CHHHHHHHHHHHHHT---TC----------------HHHHHHHHHHHHHT-------SSSCCCHHH--HH---HHHHHHH
T ss_pred CHHHHHHHHHHHHhc---Cc----------------HHHHHHHHHHHHcC-------CCCCCCHHH--HH---HHHHHHH
Confidence 999999999998876 33 11111 211 1110 000001000 00 1111111
Q ss_pred -CCChhhhHHHHHhHHhhcCcCHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhc----CCCHH
Q 007864 472 -RPDLVAWSSLLSVHEEWASRRVVLVISGFSL----NGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLA----GDDLR 541 (587)
Q Consensus 472 -~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k----~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~----~G~l~ 541 (587)
..+...+..+ -..|.+ .+++++|++.|++-.+.+- ...+ .+-..+.+ .++.+
T Consensus 178 ~~~~~~a~~~l---------------g~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~ 239 (273)
T 1ouv_A 178 DLKDSPGCFNA---------------GNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEK 239 (273)
T ss_dssp HTTCHHHHHHH---------------HHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCST
T ss_pred HCCCHHHHHHH---------------HHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHH
Confidence 1345667777 778888 9999999999999887652 5566 77788888 99999
Q ss_pred HHHHHHHHHHHcC
Q 007864 542 KGGELHHKTLRTG 554 (587)
Q Consensus 542 ~A~~l~~~M~k~G 554 (587)
+|.+.++...+.|
T Consensus 240 ~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 240 QAIENFKKGCKLG 252 (273)
T ss_dssp THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999987
No 74
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=94.32 E-value=0.39 Score=42.41 Aligned_cols=96 Identities=14% Similarity=0.079 Sum_probs=74.6
Q ss_pred CCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHH
Q 007864 380 AKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVA 458 (587)
Q Consensus 380 ~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vy 458 (587)
...|..+ ..|.+.|++++|++.|++..+. .|+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------------------~p~---------------------------- 43 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI-------------------APA---------------------------- 43 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------STT----------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------CCc----------------------------
Confidence 4467777 8888999999999999888766 332
Q ss_pred HHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhc
Q 007864 459 EILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLA 536 (587)
Q Consensus 459 naLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~ 536 (587)
+...|..+ -..|.+.|++++|++.|++..+. .|+ ...| .+-.++..
T Consensus 44 ---------------~~~~~~~l---------------~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 44 ---------------NPIYLSNR---------------AAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLARFD 91 (164)
T ss_dssp ---------------CHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred ---------------CHHHHHHH---------------HHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 23446666 77788999999999999988775 344 5566 88888889
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 007864 537 GDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 537 ~G~l~~A~~l~~~M~k~G 554 (587)
.|++++|.+.+...++..
T Consensus 92 ~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC
Confidence 999999999999888753
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=94.19 E-value=0.51 Score=53.85 Aligned_cols=134 Identities=9% Similarity=-0.037 Sum_probs=94.3
Q ss_pred CCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---HHHHHHH-HHHHHHHHhhCc
Q 007864 379 DAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---ARLWAAR-RDVINGVVSIGE 453 (587)
Q Consensus 379 d~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L~aca~~-~~lh~~m~k~~p 453 (587)
+..+|+.| ..|.+.|++++|++.|++-.+. .|+.... +..+... .+..+.+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l-------------------~P~~~~a~~nLg~~l~~~g~~~eA~----- 63 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV-------------------FPEFAAAHSNLASVLQQQGKLQEAL----- 63 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CSCCHHHHHHHHHHHHHTTCHHHHH-----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------CCCCHHHHHHHHHHHHHcCCHHHHH-----
Confidence 35679999 9999999999999999999877 7765443 2222111 0000000
Q ss_pred cHHHHHHHHHHHHHhcCC--CC-ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHH-
Q 007864 454 YVCVAEILVMLLFLDGIK--RP-DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANE-FTI- 528 (587)
Q Consensus 454 d~~vynaLI~~~vFd~M~--~p-dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~-~Ty- 528 (587)
+.|++.. .| +...|+.| =..|.+.|++++|++.|++-.+. .|+. ..|
T Consensus 64 -----------~~~~~Al~l~P~~~~a~~nL---------------g~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~ 115 (723)
T 4gyw_A 64 -----------MHYKEAIRISPTFADAYSNM---------------GNTLKEMQDVQGALQCYTRAIQI--NPAFADAHS 115 (723)
T ss_dssp -----------HHHHHHHHHCTTCHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred -----------HHHHHHHHhCCCCHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 1111111 23 46678888 88899999999999999987764 5654 566
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 007864 529 DLCSACLAGDDLRKGGELHHKTLRTGLHHT-EMKAVALG 566 (587)
Q Consensus 529 sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd-~~vynaLI 566 (587)
.+-.++.+.|++++|.+.+++.++.. |+ ...+..|.
T Consensus 116 ~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~ 152 (723)
T 4gyw_A 116 NLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLA 152 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhh
Confidence 88899999999999999999998863 43 44454444
No 76
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=94.19 E-value=0.11 Score=44.74 Aligned_cols=76 Identities=24% Similarity=0.246 Sum_probs=55.2
Q ss_pred ceeeEEecCCceeeeee------eeccchhhhhhccCchHHHHHHHHHHhcCCCCceEEeccccCC-C-CCCCCccchhh
Q 007864 265 MTIVALDVGKKYTGVAV------WHQGMEDIEAESTFFMEDMEEQMLNIKEKFEPVGFVVGFPVGS-P-EKDTPKQFSQA 336 (587)
Q Consensus 265 ~r~lAvD~G~kriGvAv------ia~aL~~~~r~s~k~~eal~~~~~m~~~G~~Pd~~Ty~sLL~a-c-~~g~l~~A~~l 336 (587)
|+++|+|+|.+++|+|+ +++++..+.+ ...+.....+..+.....++.++....++. . .....+.++++
T Consensus 1 mriLglD~G~kriGvAvsd~~~~~A~pl~ti~~---~~~~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f 77 (98)
T 1iv0_A 1 MRVGALDVGEARIGLAVGEEGVPLASGRGYLVR---KTLEEDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPL 77 (98)
T ss_dssp CCEEEEEESSSEEEEEEECSCCSSCCCEEEEEC---CCHHHHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHH
T ss_pred CcEEEEEeCCCEEEEEEEeCCCCeeeeeEEEEc---cCcHHHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHH
Confidence 57899999999999999 6788988854 234555666666666678999999988877 3 34455566666
Q ss_pred HHHHHHc
Q 007864 337 HVKAFLS 343 (587)
Q Consensus 337 ~~~M~~~ 343 (587)
-+.+.+.
T Consensus 78 ~~~L~~~ 84 (98)
T 1iv0_A 78 VEALRAR 84 (98)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 5665553
No 77
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=94.14 E-value=0.42 Score=42.36 Aligned_cols=96 Identities=8% Similarity=-0.090 Sum_probs=74.4
Q ss_pred CCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHH
Q 007864 379 DAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCV 457 (587)
Q Consensus 379 d~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~v 457 (587)
+...|..+ ..|.+.|++++|++.|++.... .|+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------------------~p~~-------------------------- 54 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-------------------DHYD-------------------------- 54 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTTC--------------------------
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-------------------Cccc--------------------------
Confidence 44567777 8889999999999999888766 3332
Q ss_pred HHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHh
Q 007864 458 AEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACL 535 (587)
Q Consensus 458 ynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~ 535 (587)
...|..+ =..|.+.|++++|++.|++.... .|+ ...| .+-.++.
T Consensus 55 -----------------~~~~~~l---------------g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 55 -----------------SRFFLGL---------------GACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAAECLL 100 (148)
T ss_dssp -----------------HHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHH
T ss_pred -----------------HHHHHHH---------------HHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHHH
Confidence 3345556 66788899999999999988764 354 4566 8888888
Q ss_pred cCCCHHHHHHHHHHHHHc
Q 007864 536 AGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 536 ~~G~l~~A~~l~~~M~k~ 553 (587)
..|++++|.+.+...++.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999988774
No 78
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.12 E-value=0.42 Score=40.22 Aligned_cols=101 Identities=6% Similarity=-0.125 Sum_probs=76.0
Q ss_pred CCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHH
Q 007864 378 KDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVC 456 (587)
Q Consensus 378 pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~ 456 (587)
.+...|..+ ..+.+.|++++|++.|++..+. .|+....
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------------------~~~~~~~---------------------- 64 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL-------------------DATPQDQ---------------------- 64 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-------------------CCCHHHH----------------------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-------------------cccchHH----------------------
Confidence 355678888 8999999999999999998766 4443110
Q ss_pred HHHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH-HHHHHH
Q 007864 457 VAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEA-NEFTI-DLCSAC 534 (587)
Q Consensus 457 vynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~P-D~~Ty-sLL~ac 534 (587)
...|..+ -..|.+.|++++|++.|++.... .| +...+ .+-.++
T Consensus 65 ------------------~~~~~~~---------------a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 109 (148)
T 2dba_A 65 ------------------AVLHRNR---------------AACHLKLEDYDKAETEASKAIEK--DGGDVKALYRRSQAL 109 (148)
T ss_dssp ------------------HHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHHHHHHHH
T ss_pred ------------------HHHHHHH---------------HHHHHHHccHHHHHHHHHHHHhh--CccCHHHHHHHHHHH
Confidence 1234555 66788889999999999887764 34 44566 777888
Q ss_pred hcCCCHHHHHHHHHHHHHcC
Q 007864 535 LAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 535 ~~~G~l~~A~~l~~~M~k~G 554 (587)
...|+.++|.+.+...++..
T Consensus 110 ~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 110 EKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHcC
Confidence 88999999999998888753
No 79
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=94.02 E-value=0.46 Score=41.13 Aligned_cols=95 Identities=11% Similarity=-0.099 Sum_probs=70.3
Q ss_pred CCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHH
Q 007864 380 AKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVA 458 (587)
Q Consensus 380 ~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vy 458 (587)
...+..+ ..+.+.|++++|++.|++.... .|+.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-------------------~p~~--------------------------- 51 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML-------------------DHYD--------------------------- 51 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTTC---------------------------
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh-------------------CCcc---------------------------
Confidence 3455666 7888899999999999888776 3433
Q ss_pred HHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhc
Q 007864 459 EILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLA 536 (587)
Q Consensus 459 naLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~ 536 (587)
...|..+ -..|.+.|++++|+..|++..... |+ ...+ .+-.++..
T Consensus 52 ----------------~~~~~~l---------------g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 52 ----------------ARYFLGL---------------GACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAECHLQ 98 (142)
T ss_dssp ----------------HHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHH
T ss_pred ----------------HHHHHHH---------------HHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHH
Confidence 2345555 666788899999999998877653 44 3455 77778888
Q ss_pred CCCHHHHHHHHHHHHHc
Q 007864 537 GDDLRKGGELHHKTLRT 553 (587)
Q Consensus 537 ~G~l~~A~~l~~~M~k~ 553 (587)
.|++++|.+.++..++.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 89999999888887764
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=94.00 E-value=0.25 Score=46.04 Aligned_cols=141 Identities=12% Similarity=-0.029 Sum_probs=84.6
Q ss_pred CCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---HHHHHHHHHHHHHHHhhCcc
Q 007864 379 DAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---ARLWAARRDVINGVVSIGEY 454 (587)
Q Consensus 379 d~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L~aca~~~~lh~~m~k~~pd 454 (587)
+..+|+.+ ..|...|++++|++.|++..+....-. .++.... ....+.. +....+...-
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------~~~~~~~~~~~~~l~~~---~~~~g~~~~A 104 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL--------------GKDHPAVAATLNNLAVL---YGKRGKYKEA 104 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------------CTTCHHHHHHHHHHHHH---HHTTTCHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc--------------CCcchHHHHHHHHHHHH---HHHhccHHHH
Confidence 35688999 999999999999999998875400000 0221111 1111111 0000000000
Q ss_pred HHHHHHHHHHHHHhcCCC---C-ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCC
Q 007864 455 VCVAEILVMLLFLDGIKR---P-DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVD------YIEAN 524 (587)
Q Consensus 455 ~~vynaLI~~~vFd~M~~---p-dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~------Gi~PD 524 (587)
...+...+ +++++... | ...+|+.+ -..|...|++++|++.|++.... +-.|+
T Consensus 105 ~~~~~~al--~~~~~~~~~~~~~~~~~~~~l---------------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 105 EPLCKRAL--EIREKVLGKFHPDVAKQLNNL---------------ALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp HHHHHHHH--HHHHHHHCTTCHHHHHHHHHH---------------HHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHH--HHHHHHcCCCChHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 00011111 22222211 1 24567777 88899999999999999998865 22444
Q ss_pred -HHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 525 -EFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 525 -~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
..++ .+-..+...|++++|.+.+....+.
T Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 168 VAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456 8888899999999999999988864
No 81
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=93.98 E-value=0.42 Score=41.12 Aligned_cols=106 Identities=10% Similarity=0.091 Sum_probs=77.5
Q ss_pred Ccchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHHH
Q 007864 381 KNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAE 459 (587)
Q Consensus 381 vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vyn 459 (587)
..|.-+ ..|.+.|++++|++.|++-.+. .|+.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-------------------~p~~---------------------------- 41 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL-------------------DPSN---------------------------- 41 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTTC----------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------CCCC----------------------------
Confidence 456778 8899999999999999887766 3333
Q ss_pred HHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCH----HHH-HHHH
Q 007864 460 ILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDY--IEANE----FTI-DLCS 532 (587)
Q Consensus 460 aLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~G--i~PD~----~Ty-sLL~ 532 (587)
...|+-+ =..|.+.|++++|++.|++-.+.. ..++. .+| .+=.
T Consensus 42 ---------------~~~~~nl---------------g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 42 ---------------ITFYNNK---------------AAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp ---------------HHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ---------------HHHHHhH---------------HHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 3456666 677899999999999999876531 22221 355 6667
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007864 533 ACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565 (587)
Q Consensus 533 ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaL 565 (587)
++...|++++|.+.+...++. .||..+...|
T Consensus 92 ~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 788899999999999988774 4555554443
No 82
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=93.97 E-value=0.15 Score=48.55 Aligned_cols=78 Identities=14% Similarity=0.028 Sum_probs=59.5
Q ss_pred CCCCCccchhhHHHHHHcCCCCCC-----CCCCchhHHHHhhhcCCcHHH--H-HhcccC---------CCCCcchhh-h
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLP-----NFKGMPICLVNEYGTSKNLAK--R-VKKFVE---------KDAKNWSGP-G 387 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~-----~tynipiaLI~~y~k~G~l~e--r-Fd~M~~---------pd~vtYNsL-~ 387 (587)
..|++++|...+.+.++.. |+. .++. .+-..|...|++++ . |++... ....+|..+ .
T Consensus 17 ~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 17 KSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYS---QLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhC--cccHHHHHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 4788999999999998863 332 4555 77788889999988 4 554321 235678889 9
Q ss_pred hcccCCChhHHHHHHHHHhhc
Q 007864 388 SYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 388 gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
.|...|++++|++.|++..+.
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~ 112 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDI 112 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999987654
No 83
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=93.89 E-value=0.074 Score=53.66 Aligned_cols=78 Identities=14% Similarity=0.038 Sum_probs=59.3
Q ss_pred CCCCCccchhhHHHHHHcCCCCCC-----CCCCchhHHHHhhhcCCcHHH--H-Hhccc---------CCCCCcchhh-h
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLP-----NFKGMPICLVNEYGTSKNLAK--R-VKKFV---------EKDAKNWSGP-G 387 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~-----~tynipiaLI~~y~k~G~l~e--r-Fd~M~---------~pd~vtYNsL-~ 387 (587)
..|++++|...+.+.++.. |+. .++. .+-..|...|++++ . |++.. .....+|+.+ .
T Consensus 60 ~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~---~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 60 NAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYS---QLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHH---HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhc--ccChhHHHHHHH---HHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 4688999999999988763 332 3456 77788889999988 4 55432 1245678889 9
Q ss_pred hcccCCChhHHHHHHHHHhhc
Q 007864 388 SYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 388 gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
.|.+.|++++|++.|++..+.
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~ 155 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTL 155 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999987654
No 84
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=93.71 E-value=0.28 Score=48.65 Aligned_cols=78 Identities=14% Similarity=0.028 Sum_probs=59.3
Q ss_pred CCCCCccchhhHHHHHHcCCCCCC-----CCCCchhHHHHhhhcCCcHHH--H-HhcccC---------CCCCcchhh-h
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLP-----NFKGMPICLVNEYGTSKNLAK--R-VKKFVE---------KDAKNWSGP-G 387 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~-----~tynipiaLI~~y~k~G~l~e--r-Fd~M~~---------pd~vtYNsL-~ 387 (587)
..|++++|...+.+.++.. |+. .++. .+-..|...|++++ . |++... ....+|..+ .
T Consensus 21 ~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 95 (406)
T 3sf4_A 21 KSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYS---QLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 95 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcC--cccHHHHHHHHH---HHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 4788999999999998763 332 3455 67788889999998 4 654321 124578888 9
Q ss_pred hcccCCChhHHHHHHHHHhhc
Q 007864 388 SYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 388 gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
.|...|++++|++.|++..+.
T Consensus 96 ~~~~~g~~~~A~~~~~~al~~ 116 (406)
T 3sf4_A 96 TLKVLGNFDEAIVCCQRHLDI 116 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999987654
No 85
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=93.70 E-value=0.51 Score=44.23 Aligned_cols=162 Identities=7% Similarity=-0.032 Sum_probs=104.3
Q ss_pred CCCCccchhhHHHHHHcCCCCCC----CCCCchhHHHHhhhcCCcHHH--H-Hhccc--CCCCC----cchhh-hhcc--
Q 007864 327 KDTPKQFSQAHVKAFLSKLDSLP----NFKGMPICLVNEYGTSKNLAK--R-VKKFV--EKDAK----NWSGP-GSYP-- 390 (587)
Q Consensus 327 ~g~l~~A~~l~~~M~~~Gl~pd~----~tynipiaLI~~y~k~G~l~e--r-Fd~M~--~pd~v----tYNsL-~gy~-- 390 (587)
.|++++|...+..+++.. |+. ..+. .+-..|.+.|+.++ . |++.. .|+.. .|--+ ..|.
T Consensus 17 ~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~---~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~ 91 (225)
T 2yhc_A 17 DGNWRQAITQLEALDNRY--PFGPYSQQVQL---DLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMAL 91 (225)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTSTTHHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhh
Confidence 577888888888888653 221 1333 56778888899888 5 77654 24322 23333 3333
Q ss_pred ----------------cCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCcc
Q 007864 391 ----------------STKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEY 454 (587)
Q Consensus 391 ----------------r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd 454 (587)
+.|+.++|++.|++..+. -|+......+..+...+...+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-------------------~P~~~~a~~a~~~l~~~~~~~~----- 147 (225)
T 2yhc_A 92 DDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-------------------YPNSQYTTDATKRLVFLKDRLA----- 147 (225)
T ss_dssp HC--------------CCHHHHHHHHHHHHHHTT-------------------CTTCTTHHHHHHHHHHHHHHHH-----
T ss_pred hhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-------------------CcCChhHHHHHHHHHHHHHHHH-----
Confidence 467899999999999877 5554322111111100100000
Q ss_pred HHHHHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHH-H
Q 007864 455 VCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANE----FTI-D 529 (587)
Q Consensus 455 ~~vynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~----~Ty-s 529 (587)
..+-.+ -..|.+.|++++|+..|+++.+. .|+. ..+ .
T Consensus 148 ---------------------~~~~~~---------------a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~ 189 (225)
T 2yhc_A 148 ---------------------KYEYSV---------------AEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPL 189 (225)
T ss_dssp ---------------------HHHHHH---------------HHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHH
T ss_pred ---------------------HHHHHH---------------HHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHH
Confidence 001123 55688999999999999998875 3443 457 8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCC
Q 007864 530 LCSACLAGDDLRKGGELHHKTLRTGL 555 (587)
Q Consensus 530 LL~ac~~~G~l~~A~~l~~~M~k~G~ 555 (587)
+..++.+.|+.++|.+.++.+...+-
T Consensus 190 l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 190 MENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 89999999999999999999887653
No 86
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=93.63 E-value=0.4 Score=41.26 Aligned_cols=55 Identities=9% Similarity=0.031 Sum_probs=34.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHH-HHHHHHhcCCCHHHHHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYI-EANEFTI-DLCSACLAGDDLRKGGELHHKTL 551 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi-~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~ 551 (587)
-..|.+.|++++|.+.|++.....- .++...+ .....+.+.|++++|.+.+....
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 6677888888888888888766421 1112222 33333566677777777766543
No 87
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=93.57 E-value=0.72 Score=39.55 Aligned_cols=57 Identities=11% Similarity=-0.066 Sum_probs=48.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
-..|.+.|++++|++.|++..... ..+...| .+-..+.+.|++++|.+.+....+..
T Consensus 54 a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 54 SLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 778899999999999999987753 2245667 88888999999999999999998864
No 88
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=93.55 E-value=0.58 Score=46.06 Aligned_cols=148 Identities=10% Similarity=-0.064 Sum_probs=98.9
Q ss_pred HHHHhhhcCCcHHH--H-Hhccc--CC-CCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCC
Q 007864 357 CLVNEYGTSKNLAK--R-VKKFV--EK-DAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPP 429 (587)
Q Consensus 357 aLI~~y~k~G~l~e--r-Fd~M~--~p-d~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~P 429 (587)
.+-..+.+.|+.++ . |++.. .| +...+..+ ..|.+.|++++|.++|++.... .|
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-------------------~p 182 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-------------------DQ 182 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-------------------GC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-------------------hc
Confidence 55666778899988 5 77653 34 55678888 9999999999999999988766 67
Q ss_pred CHHHH-HHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCC--CC-ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCC
Q 007864 430 DDKFI-ARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIK--RP-DLVAWSSLLSVHEEWASRRVVLVISGFSLNGW 505 (587)
Q Consensus 430 d~~Ty-L~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~--~p-dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~ 505 (587)
+.... +.+.... ... .+..... ..|++.. .| |...+..+ -..|.+.|+
T Consensus 183 ~~~~~~~~~~~~l---~~~-~~~~~a~---------~~l~~al~~~P~~~~~~~~l---------------a~~l~~~g~ 234 (287)
T 3qou_A 183 DTRYQGLVAQIEL---LXQ-AADTPEI---------QQLQQQVAENPEDAALATQL---------------ALQLHQVGR 234 (287)
T ss_dssp SHHHHHHHHHHHH---HHH-HTSCHHH---------HHHHHHHHHCTTCHHHHHHH---------------HHHHHHTTC
T ss_pred chHHHHHHHHHHH---Hhh-cccCccH---------HHHHHHHhcCCccHHHHHHH---------------HHHHHHccc
Confidence 65543 2211100 000 0000000 1111111 23 55677777 888999999
Q ss_pred HHHHHHHHHHHHhcCCC-CCHHHH-HHHHHHhcCCCHHHHHHHHHHHH
Q 007864 506 YAEALGLFQTMRVDYIE-ANEFTI-DLCSACLAGDDLRKGGELHHKTL 551 (587)
Q Consensus 506 ~~eAl~Lf~eM~~~Gi~-PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~ 551 (587)
+++|++.|++..+..-. .+...+ .+...+...|+.+++...+...+
T Consensus 235 ~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 235 NEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999875322 125567 99999999999999888877654
No 89
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=92.80 E-value=1.2 Score=36.69 Aligned_cols=56 Identities=7% Similarity=0.005 Sum_probs=46.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEAN----EFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD----~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
-..|.+.|++++|.+.|++..... |+ ...+ .+-.++.+.|+.++|...++.+++..
T Consensus 46 g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 46 GESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 667889999999999999988753 44 4556 78888899999999999999998864
No 90
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=92.32 E-value=0.52 Score=41.83 Aligned_cols=56 Identities=13% Similarity=0.098 Sum_probs=36.5
Q ss_pred HHH-HHhcCCH--HHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 497 ISG-FSLNGWY--AEALGLFQTMRVDYIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~g-y~k~G~~--~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
-.. |.+.|++ ++|.+.|++.... .|+ ...+ .+-..+...|++++|...+..+.+..
T Consensus 85 a~~l~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 444 5566776 7777777776654 343 3445 66666777777777777777776643
No 91
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=92.11 E-value=1.9 Score=39.71 Aligned_cols=128 Identities=7% Similarity=-0.036 Sum_probs=86.6
Q ss_pred CCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH--HHHHHHH----HHHHHHHHhh
Q 007864 379 DAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI--ARLWAAR----RDVINGVVSI 451 (587)
Q Consensus 379 d~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty--L~aca~~----~~lh~~m~k~ 451 (587)
|...|... ..|.+.|++++|++.|++..+. .- .+|...+ +..+... .+......+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~--------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~- 67 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKL---TN--------------NQDSVTAYNCGVCADNIKKYKEAADYFDI- 67 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TT--------------TCCHHHHHHHHHHHHHTTCHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---cC--------------CCCcHHHHHHHHHHHHhhcHHHHHHHHHH-
Confidence 44567777 8899999999999999999887 22 2566665 2222211 111111110
Q ss_pred CccHHHHHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH------
Q 007864 452 GEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANE------ 525 (587)
Q Consensus 452 ~pd~~vynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~------ 525 (587)
.. +....+...|..+ -..|.+.|++++|++.|++..+. .|+.
T Consensus 68 --------------al-~~~p~~~~~~~~l---------------~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 115 (228)
T 4i17_A 68 --------------AI-KKNYNLANAYIGK---------------SAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKL 115 (228)
T ss_dssp --------------HH-HTTCSHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHH
T ss_pred --------------HH-HhCcchHHHHHHH---------------HHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHH
Confidence 11 1111245567777 88899999999999999998764 4553
Q ss_pred --HHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 007864 526 --FTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHT 558 (587)
Q Consensus 526 --~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd 558 (587)
..| .+=..+...|++++|.+.+...++. .|+
T Consensus 116 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~ 149 (228)
T 4i17_A 116 YAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSK 149 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCH
T ss_pred HHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCC
Confidence 345 6667788899999999999999875 565
No 92
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=91.99 E-value=1.6 Score=34.92 Aligned_cols=68 Identities=21% Similarity=0.146 Sum_probs=54.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
...|.+.|++++|.++|+++.... ..+..++ .+...+.+.|++++|..++..+.+..- .+..++..+.
T Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 84 (125)
T 1na0_A 16 GNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLG 84 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHH
Confidence 889999999999999999998753 2355677 888999999999999999999988642 2445555554
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=91.74 E-value=2.6 Score=43.39 Aligned_cols=150 Identities=11% Similarity=0.055 Sum_probs=88.0
Q ss_pred HHHHhhhcCCcHHH--H-HhcccCC-----CCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCC
Q 007864 357 CLVNEYGTSKNLAK--R-VKKFVEK-----DAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYK 427 (587)
Q Consensus 357 aLI~~y~k~G~l~e--r-Fd~M~~p-----d~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~ 427 (587)
.+-..|...|+.++ + +.+.... +...+-.+ ..|.+.|+.+.|.+.+++|.+.
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~------------------- 165 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA------------------- 165 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------------------
Confidence 45556666777777 4 5554222 23344455 6777777777777777777666
Q ss_pred CCC-----HHHH---HHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCCC--CChhhhHHHHHhHHhhcCcCHHHHH
Q 007864 428 PPD-----DKFI---ARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKR--PDLVAWSSLLSVHEEWASRRVVLVI 497 (587)
Q Consensus 428 ~Pd-----~~Ty---L~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~~--pdvvTyNsLI~gy~km~~~dvvsLI 497 (587)
.|| ..+. ..++... ...-.+..... .+|+++.+ |+..+-+.+ +
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l---~~g~~~~q~A~---------~~f~El~~~~p~~~~~~lL---------------l 218 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKF---ATNKETATSNF---------YYYEELSQTFPTWKTQLGL---------------L 218 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH---HHTCSTTTHHH---------HHHHHHHTTSCSHHHHHHH---------------H
T ss_pred CccccccchHHHHHHHHHHHHH---HhCCccHHHHH---------HHHHHHHHhCCCcccHHHH---------------H
Confidence 662 2222 3333321 00000000000 56666643 443344455 7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-----C---CCCCH-HHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 498 SGFSLNGWYAEALGLFQTMRVD-----Y---IEANE-FTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 498 ~gy~k~G~~~eAl~Lf~eM~~~-----G---i~PD~-~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
.++.+.|++++|.+.++.+.+. . ..|+. .|+ .+|......|+ ++.++..++.+..
T Consensus 219 n~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 219 NLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 7899999999999999977653 1 13544 445 66666666787 7889999988754
No 94
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=91.47 E-value=3.3 Score=43.13 Aligned_cols=184 Identities=9% Similarity=0.002 Sum_probs=118.6
Q ss_pred CCCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCc-HHH--H-Hhccc---CCCCCcchhh-hhcccCCChhH
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKN-LAK--R-VKKFV---EKDAKNWSGP-GSYPSTKSFHT 397 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~-l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~G~~ee 397 (587)
..|+.++|...+.+.++.. +-+...|+ .+-..|.+.|+ +++ . |++.. ..+...|+.+ ..|.+.|++++
T Consensus 109 ~~g~~~~Al~~~~~al~l~-P~~~~a~~---~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~e 184 (382)
T 2h6f_A 109 RDERSERAFKLTRDAIELN-AANYTVWH---FRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQ 184 (382)
T ss_dssp HTCCCHHHHHHHHHHHHHC-TTCHHHHH---HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTT
T ss_pred HCCChHHHHHHHHHHHHhC-ccCHHHHH---HHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHH
Confidence 5788999999999888753 22345566 67777888886 888 5 77654 3466788889 99999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHH-H-HHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCC--C-
Q 007864 398 NRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKF-I-ARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIK--R- 472 (587)
Q Consensus 398 Al~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~T-y-L~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~--~- 472 (587)
|+..|++..+. .|+... | -.+.+- ..+.+...-. ..|+++. .
T Consensus 185 Al~~~~kal~l-------------------dP~~~~a~~~lg~~~-----~~~g~~~eAl---------~~~~~al~l~P 231 (382)
T 2h6f_A 185 ELEFIADILNQ-------------------DAKNYHAWQHRQWVI-----QEFKLWDNEL---------QYVDQLLKEDV 231 (382)
T ss_dssp HHHHHHHHHHH-------------------CTTCHHHHHHHHHHH-----HHHTCCTTHH---------HHHHHHHHHCT
T ss_pred HHHHHHHHHHh-------------------CccCHHHHHHHHHHH-----HHcCChHHHH---------HHHHHHHHhCC
Confidence 99999999877 554433 3 111111 0000011111 2222221 2
Q ss_pred CChhhhHHHHHhHHhhcCcCHHHHHHHHHh-cCCHHHH-----HHHHHHHHhcCCCCCHH-HH-HHHHHHhcCC--CHHH
Q 007864 473 PDLVAWSSLLSVHEEWASRRVVLVISGFSL-NGWYAEA-----LGLFQTMRVDYIEANEF-TI-DLCSACLAGD--DLRK 542 (587)
Q Consensus 473 pdvvTyNsLI~gy~km~~~dvvsLI~gy~k-~G~~~eA-----l~Lf~eM~~~Gi~PD~~-Ty-sLL~ac~~~G--~l~~ 542 (587)
.|...|+.+ -..|.+ .|..++| ++.|++... +.|+.. .| .+-..+.+.| +.++
T Consensus 232 ~~~~a~~~l---------------g~~l~~l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~ 294 (382)
T 2h6f_A 232 RNNSVWNQR---------------YFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPN 294 (382)
T ss_dssp TCHHHHHHH---------------HHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHH
T ss_pred CCHHHHHHH---------------HHHHHHhcCcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHH
Confidence 366788888 777888 6665777 588887766 456654 55 6677777777 6889
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHH
Q 007864 543 GGELHHKTLRTGLHH-TEMKAVALG 566 (587)
Q Consensus 543 A~~l~~~M~k~G~~p-d~~vynaLI 566 (587)
+.+....+ + ..| +...+..|+
T Consensus 295 a~~~~~~~-~--~~p~~~~al~~La 316 (382)
T 2h6f_A 295 LLNQLLDL-Q--PSHSSPYLIAFLV 316 (382)
T ss_dssp HHHHHHHH-T--TTCCCHHHHHHHH
T ss_pred HHHHHHHh-c--cCCCCHHHHHHHH
Confidence 98888877 3 334 444555554
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=91.34 E-value=0.55 Score=41.49 Aligned_cols=64 Identities=5% Similarity=-0.063 Sum_probs=45.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHH-HHHHHHhcCCCHHHHHHH-HHHHHHcCCCC-CHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANE-FTI-DLCSACLAGDDLRKGGEL-HHKTLRTGLHH-TEMKAVA 564 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~-~Ty-sLL~ac~~~G~l~~A~~l-~~~M~k~G~~p-d~~vyna 564 (587)
=..|.+.|++++|+..|++..+. .|+. ..| .+-..+.+.|+.+++.+. ++..++. .| +..+|+.
T Consensus 72 g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l 139 (150)
T 4ga2_A 72 GLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKL 139 (150)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHH
T ss_pred HHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHH
Confidence 77788999999999999987764 5654 456 777788888988765554 5776664 34 3444443
No 96
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=90.99 E-value=0.73 Score=39.25 Aligned_cols=55 Identities=9% Similarity=-0.139 Sum_probs=42.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
=..|.+.|++++|+..|++-.+. .|+ ...+ .+-.++.+.|+.++|...++..++.
T Consensus 58 g~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 58 GLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55677889999999999887664 454 3455 7778888889999999888887753
No 97
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=90.98 E-value=0.35 Score=43.01 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=25.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCS 532 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ 532 (587)
-..|.+.|++++|.+.|++.... .|+.... .++.
T Consensus 122 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 156 (177)
T 2e2e_A 122 ASDAFMQANYAQAIELWQKVMDL--NSPRINRTQLVE 156 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT--CCTTSCHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhh--CCCCccHHHHHH
Confidence 77889999999999999998764 3444434 4443
No 98
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.94 E-value=0.13 Score=50.62 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=45.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHH------HH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEF------TI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~------Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
-..|.+.|++++|++.|++........... +| .+-.++...|++++|...++..++
T Consensus 165 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888999999999999999988754332221 56 777788899999999999988765
No 99
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=90.69 E-value=1.3 Score=36.21 Aligned_cols=55 Identities=13% Similarity=-0.007 Sum_probs=47.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
-..|.+.|++++|++.|++..+.. |+ ...| .+-.++...|++++|.+.++..++.
T Consensus 14 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 14 AQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888999999999999999988753 44 4567 8888999999999999999988764
No 100
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=90.41 E-value=0.97 Score=38.84 Aligned_cols=90 Identities=11% Similarity=0.103 Sum_probs=67.9
Q ss_pred HhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHH
Q 007864 360 NEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDK 432 (587)
Q Consensus 360 ~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~ 432 (587)
+.|.+.|++++ . |++.. ..+...|..+ ..|.+.|++++|++.|++..+. .|+
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------------------~p~-- 79 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL-------------------DSK-- 79 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTT--
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-------------------hhh--
Confidence 45778889888 5 77643 3467789999 9999999999999999887766 232
Q ss_pred HHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHH
Q 007864 433 FIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGL 512 (587)
Q Consensus 433 TyL~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~L 512 (587)
+...|..+ -..|.+.|++++|++.
T Consensus 80 -----------------------------------------~~~a~~~l---------------g~~~~~~~~~~~A~~~ 103 (126)
T 4gco_A 80 -----------------------------------------FIKGYIRK---------------AACLVAMREWSKAQRA 103 (126)
T ss_dssp -----------------------------------------CHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred -----------------------------------------hhHHHHHH---------------HHHHHHCCCHHHHHHH
Confidence 23345566 6778889999999999
Q ss_pred HHHHHhcCCCCCHHHH
Q 007864 513 FQTMRVDYIEANEFTI 528 (587)
Q Consensus 513 f~eM~~~Gi~PD~~Ty 528 (587)
|++-.+ +.|+....
T Consensus 104 ~~~al~--l~P~~~~a 117 (126)
T 4gco_A 104 YEDALQ--VDPSNEEA 117 (126)
T ss_dssp HHHHHH--HCTTCHHH
T ss_pred HHHHHH--HCcCCHHH
Confidence 998776 46776554
No 101
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=90.40 E-value=2.2 Score=37.82 Aligned_cols=57 Identities=11% Similarity=-0.046 Sum_probs=42.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC-CCCC----HHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDY-IEAN----EFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~G-i~PD----~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
-..|...|++++|.+.|++-.... -..+ ..++ .+-..+...|++++|.+.+.+..+.
T Consensus 114 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 114 ATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 778899999999999999876421 1112 2335 6677788899999999998877653
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=90.36 E-value=0.19 Score=56.32 Aligned_cols=181 Identities=11% Similarity=-0.091 Sum_probs=114.4
Q ss_pred CCCCCCccchhhHHHHHHc------CCCC-CCCCCCchhHHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhcc
Q 007864 325 PEKDTPKQFSQAHVKAFLS------KLDS-LPNFKGMPICLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSYP 390 (587)
Q Consensus 325 c~~g~l~~A~~l~~~M~~~------Gl~p-d~~tynipiaLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~ 390 (587)
...|+.++|.+.+.+.+.. ...| +...+. .+-..|.+.|++++ . |++.. ..|...|+.+ ..|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~---~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPL---MEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHH---HHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHH---HHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 4678899999999988721 1223 334455 66778889999999 5 77654 3466789999 9999
Q ss_pred cCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcC
Q 007864 391 STKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGI 470 (587)
Q Consensus 391 r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M 470 (587)
+.|++++|++.|++..+. .|+........+ .++....+... ...|...+. .
T Consensus 479 ~~g~~~~A~~~~~~al~l-------------------~P~~~~~~~~lg---~~~~~~g~~~~-~~~~~~al~------~ 529 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDT-------------------FPGELAPKLALA---ATAELAGNTDE-HKFYQTVWS------T 529 (681)
T ss_dssp HHTCHHHHHHHHHHHHHH-------------------STTCSHHHHHHH---HHHHHHTCCCT-TCHHHHHHH------H
T ss_pred HcCCHHHHHHHHHHHHHh-------------------CCCChHHHHHHH---HHHHHcCChHH-HHHHHHHHH------h
Confidence 999999999999999877 665443311111 01111111222 333332221 1
Q ss_pred CCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HH-HHHHHHhcCCC-----HHHH
Q 007864 471 KRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF-TI-DLCSACLAGDD-----LRKG 543 (587)
Q Consensus 471 ~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~-Ty-sLL~ac~~~G~-----l~~A 543 (587)
...+...|..+ -..|.+.|++++|++.|++..+ +.|+.. .+ .+-.++...+. .+..
T Consensus 530 ~P~~~~a~~~l---------------g~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~ 592 (681)
T 2pzi_A 530 NDGVISAAFGL---------------ARARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRSTSEVTEEQI 592 (681)
T ss_dssp CTTCHHHHHHH---------------HHHHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC-------CCHHHH
T ss_pred CCchHHHHHHH---------------HHHHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHHccCCCCCCCHHHH
Confidence 11256678888 8889999999999999997765 567754 44 66666666665 3555
Q ss_pred HHHHHHHHHcC
Q 007864 544 GELHHKTLRTG 554 (587)
Q Consensus 544 ~~l~~~M~k~G 554 (587)
.+......+..
T Consensus 593 ~~A~~~l~~~~ 603 (681)
T 2pzi_A 593 RDAARRVEALP 603 (681)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHhhCC
Confidence 55555555544
No 103
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=90.35 E-value=0.38 Score=58.89 Aligned_cols=63 Identities=8% Similarity=-0.170 Sum_probs=41.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaL 565 (587)
-.+|...|+++.|...... +.-+...+ .++.-|.+.|.+++|..+++..+... .-+...++-|
T Consensus 1257 ~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftEL 1320 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 1320 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHH
Confidence 6667777777777665443 33456677 88899999999999999987665433 2233344434
No 104
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=90.25 E-value=1.3 Score=42.06 Aligned_cols=158 Identities=10% Similarity=-0.005 Sum_probs=95.2
Q ss_pred HHHHhhhcCCcHHH--H-HhcccC--CC----CCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCC
Q 007864 357 CLVNEYGTSKNLAK--R-VKKFVE--KD----AKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNY 426 (587)
Q Consensus 357 aLI~~y~k~G~l~e--r-Fd~M~~--pd----~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~ 426 (587)
.+-..|.+.|++++ . |++... |+ ...|..+ ..|.+.|++++|++.|++..+.
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~------------------ 81 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI------------------ 81 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH------------------
Confidence 34456678899998 5 877653 43 3467778 8999999999999999999887
Q ss_pred CCCCHH----HH--HH-HHHH--------H------HHHHHHHHhhCc-cHHHHHHHHHH-HHHhcCCCCChhhhHHHHH
Q 007864 427 KPPDDK----FI--AR-LWAA--------R------RDVINGVVSIGE-YVCVAEILVML-LFLDGIKRPDLVAWSSLLS 483 (587)
Q Consensus 427 ~~Pd~~----Ty--L~-aca~--------~------~~lh~~m~k~~p-d~~vynaLI~~-~vFd~M~~pdvvTyNsLI~ 483 (587)
.|+.. .+ +. ++.. . ...+..+++..| +.....++... .+-.. -...+-.+
T Consensus 82 -~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~----~~~~~~~l-- 154 (261)
T 3qky_A 82 -YQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK----LARKQYEA-- 154 (261)
T ss_dssp -CTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH----HHHHHHHH--
T ss_pred -CCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH----HHHHHHHH--
Confidence 44321 12 11 1111 1 222222222112 11222221111 00000 00012333
Q ss_pred hHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHH-HHHHHHhcC----------CCHHHHHHHHH
Q 007864 484 VHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN----EFTI-DLCSACLAG----------DDLRKGGELHH 548 (587)
Q Consensus 484 gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD----~~Ty-sLL~ac~~~----------G~l~~A~~l~~ 548 (587)
-..|.+.|++++|+..|++.... .|+ ...+ .+-.++... |++++|...+.
T Consensus 155 -------------a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~ 219 (261)
T 3qky_A 155 -------------ARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYE 219 (261)
T ss_dssp -------------HHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred -------------HHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHH
Confidence 66789999999999999998875 344 2345 666677655 88999999999
Q ss_pred HHHHcC
Q 007864 549 KTLRTG 554 (587)
Q Consensus 549 ~M~k~G 554 (587)
.+++.-
T Consensus 220 ~~~~~~ 225 (261)
T 3qky_A 220 RLLQIF 225 (261)
T ss_dssp HHHHHC
T ss_pred HHHHHC
Confidence 998864
No 105
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=89.92 E-value=2.4 Score=43.31 Aligned_cols=188 Identities=11% Similarity=-0.068 Sum_probs=104.5
Q ss_pred CCCCccchhhHHHHHHcCCCCC-CCCCCchhHHHHhhhc----CCcHHH--H-Hhccc---CCCCCcchhh-hhcccCCC
Q 007864 327 KDTPKQFSQAHVKAFLSKLDSL-PNFKGMPICLVNEYGT----SKNLAK--R-VKKFV---EKDAKNWSGP-GSYPSTKS 394 (587)
Q Consensus 327 ~g~l~~A~~l~~~M~~~Gl~pd-~~tynipiaLI~~y~k----~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~G~ 394 (587)
.+..++|.+.+.+.++.. |+ ..++. .+-..+.+ .|+.++ + +++.. ..+...|+.+ ..|.+.|+
T Consensus 188 ~~~~~~al~~~~~al~l~--p~~~~~~~---~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 262 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAIRLN--PDNQYLKV---LLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE 262 (472)
T ss_dssp SCCCCCTHHHHHHHHHHC--SSCHHHHH---HHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHhhcC--CcchHHHH---HHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc
Confidence 466677887777776643 32 22222 33333333 344444 3 55432 3456788999 99999999
Q ss_pred hhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH---HHHHHHHHHHH--HHHHhhCccHHHHHHHHHH--HHH
Q 007864 395 FHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI---ARLWAARRDVI--NGVVSIGEYVCVAEILVML--LFL 467 (587)
Q Consensus 395 ~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty---L~aca~~~~lh--~~m~k~~pd~~vynaLI~~--~vF 467 (587)
+++|++.|++..+. .|+.... +..+-+..... .....-.....-.....+. ..|
T Consensus 263 ~~~A~~~~~~al~~-------------------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 323 (472)
T 4g1t_A 263 PDKAIELLKKALEY-------------------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHL 323 (472)
T ss_dssp HHHHHHHHHHHHHH-------------------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh-------------------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999887 6765543 32222110000 0000000000000000000 222
Q ss_pred hcC---CCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH--HH-HHHH-HHhcCCCH
Q 007864 468 DGI---KRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEF--TI-DLCS-ACLAGDDL 540 (587)
Q Consensus 468 d~M---~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~--Ty-sLL~-ac~~~G~l 540 (587)
+.. ...+..+|+.+ -..|.+.|++++|++.|++..+....|... .+ .+-. .....|+.
T Consensus 324 ~~a~~~~~~~~~~~~~l---------------g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (472)
T 4g1t_A 324 KKADEANDNLFRVCSIL---------------ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCE 388 (472)
T ss_dssp HHHHHHCTTTCCCHHHH---------------HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHhhcCCchhhhhhhH---------------HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCH
Confidence 222 22355677778 888999999999999999987754433321 12 2211 23467999
Q ss_pred HHHHHHHHHHHHc
Q 007864 541 RKGGELHHKTLRT 553 (587)
Q Consensus 541 ~~A~~l~~~M~k~ 553 (587)
++|.+.+.+.++.
T Consensus 389 ~~Ai~~y~kal~i 401 (472)
T 4g1t_A 389 DKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhc
Confidence 9999988887764
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=89.90 E-value=1.2 Score=47.85 Aligned_cols=67 Identities=12% Similarity=-0.160 Sum_probs=52.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
-..|.+.|++++|.+.|++..+. .|+ ...+ .+-..+.+.|+.++|.+.++...+..-. +...+..|.
T Consensus 64 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 132 (568)
T 2vsy_A 64 GRVRWTQQRHAEAAVLLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLL 132 (568)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 77899999999999999998775 354 5567 8889999999999999999999886422 334444443
No 107
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=89.87 E-value=1.4 Score=43.12 Aligned_cols=29 Identities=10% Similarity=0.097 Sum_probs=22.5
Q ss_pred CCcchhh-hhcccCCChhHHHHHHHHHhhc
Q 007864 380 AKNWSGP-GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 380 ~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
...|..+ ..|.+.|++++|++.|++..+.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 33 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR 33 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456667 7788888888888888888776
No 108
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=89.83 E-value=0.91 Score=48.27 Aligned_cols=109 Identities=12% Similarity=0.099 Sum_probs=86.4
Q ss_pred CCCCcchhh-hhcccCCCh-hHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccH
Q 007864 378 KDAKNWSGP-GSYPSTKSF-HTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYV 455 (587)
Q Consensus 378 pd~vtYNsL-~gy~r~G~~-eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~ 455 (587)
.+...|..+ ..|.+.|++ ++|++.|++..+. .|+
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~-------------------~p~------------------------- 135 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL-------------------EPE------------------------- 135 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-------------------CTT-------------------------
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh-------------------CCC-------------------------
Confidence 356778888 999999999 9999999988776 332
Q ss_pred HHHHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHH
Q 007864 456 CVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSAC 534 (587)
Q Consensus 456 ~vynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac 534 (587)
+...|+.+ -..|.+.|++++|++.|++..+. .|+...+ .+-..+
T Consensus 136 ------------------~~~a~~~l---------------g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~ 180 (474)
T 4abn_A 136 ------------------LVEAWNQL---------------GEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVL 180 (474)
T ss_dssp ------------------CHHHHHHH---------------HHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHH
T ss_pred ------------------CHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHH
Confidence 23457777 78899999999999999998765 5887788 888889
Q ss_pred hcC---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 535 LAG---------DDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 535 ~~~---------G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
... |++++|.+.++..++..- -+...+..|.
T Consensus 181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 220 (474)
T 4abn_A 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILG 220 (474)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 999 999999999999988642 2344555444
No 109
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=89.79 E-value=1.2 Score=45.01 Aligned_cols=116 Identities=11% Similarity=-0.076 Sum_probs=86.8
Q ss_pred HHHHhhhcCCcHHH--H-Hhccc--CCC----------------CCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCC
Q 007864 357 CLVNEYGTSKNLAK--R-VKKFV--EKD----------------AKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVD 414 (587)
Q Consensus 357 aLI~~y~k~G~l~e--r-Fd~M~--~pd----------------~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~ 414 (587)
.+=..|.+.|++++ . |++.. .|+ ...|+.+ ..|.+.|++++|++.|++..+.
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~------ 225 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL------ 225 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 56667778888888 4 65443 233 3789999 9999999999999999988876
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHH
Q 007864 415 SSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVV 494 (587)
Q Consensus 415 ~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvv 494 (587)
.|+ +...|..+
T Consensus 226 -------------~p~-------------------------------------------~~~a~~~l------------- 236 (336)
T 1p5q_A 226 -------------DSN-------------------------------------------NEKGLSRR------------- 236 (336)
T ss_dssp -------------CTT-------------------------------------------CHHHHHHH-------------
T ss_pred -------------CCC-------------------------------------------cHHHHHHH-------------
Confidence 333 23345556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHH-HHHHHHhcCCCHHHH-HHHHHHHH
Q 007864 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANE-FTI-DLCSACLAGDDLRKG-GELHHKTL 551 (587)
Q Consensus 495 sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~-~Ty-sLL~ac~~~G~l~~A-~~l~~~M~ 551 (587)
-.+|.+.|++++|++.|++..+. .|+. ..+ .+-..+.+.|+.+++ +.++..|.
T Consensus 237 --g~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 237 --GEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77789999999999999998764 4544 455 777788888998888 55666664
No 110
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=89.47 E-value=1.3 Score=54.33 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=27.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELH 547 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~ 547 (587)
...|++.|++++|.+.+++= -|..|| .+-.+|...|+++.|....
T Consensus 1228 A~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1228 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 66666666666666666543 245666 6666666666666665543
No 111
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=89.39 E-value=0.77 Score=46.27 Aligned_cols=80 Identities=10% Similarity=-0.068 Sum_probs=52.0
Q ss_pred CCCCCccchhhHHHHHHcCC-CCC----CCCCCchhHHHHhhhcCCcHHH--H-Hhccc----C-C-----CCCcchhh-
Q 007864 326 EKDTPKQFSQAHVKAFLSKL-DSL----PNFKGMPICLVNEYGTSKNLAK--R-VKKFV----E-K-----DAKNWSGP- 386 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl-~pd----~~tynipiaLI~~y~k~G~l~e--r-Fd~M~----~-p-----d~vtYNsL- 386 (587)
..|+.++|...+.+.++.-- .+| ..++. .+=..|...|+.++ . |++.. + + ...+|+.+
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~---~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFF---KMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 47888888888888875311 111 23445 56667777888877 3 43322 1 1 13477888
Q ss_pred hhcccCCChhHHHHHHHHHhhc
Q 007864 387 GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 387 ~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
..|.+.|++++|++.|++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~ 213 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSM 213 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8888888888888888876643
No 112
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=89.16 E-value=0.17 Score=48.18 Aligned_cols=57 Identities=14% Similarity=0.009 Sum_probs=44.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVD----YIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~----Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
-..|.+.|++++|.+.|++.... +-.+. ..++ .+-..+.+.|++++|...++...+.
T Consensus 270 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 270 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 78899999999999999887653 21111 3466 8888888999999999999988764
No 113
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=88.39 E-value=2.8 Score=32.85 Aligned_cols=69 Identities=10% Similarity=-0.142 Sum_probs=53.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLH-HTEMKAVALG 566 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~-pd~~vynaLI 566 (587)
-..|.+.|++++|...|++..+..- .+...| .+-..+...|++++|.+.+...++..-. .+..++..+.
T Consensus 13 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 13 GVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 8889999999999999999877532 245677 8888899999999999999999886422 1344554444
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=88.18 E-value=0.83 Score=44.54 Aligned_cols=56 Identities=11% Similarity=-0.105 Sum_probs=43.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----cCCCCC-HHHH-HHHHHHhcCC-CHHHHHHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRV----DYIEAN-EFTI-DLCSACLAGD-DLRKGGELHHKTLR 552 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~----~Gi~PD-~~Ty-sLL~ac~~~G-~l~~A~~l~~~M~k 552 (587)
-..|.+.|++++|++.+++-.+ .+-.+. ..+| .+=.++.+.| +.++|.+.+....+
T Consensus 203 g~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 203 AKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8889999999999999987654 233333 4566 7778888899 46999998887753
No 115
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=87.62 E-value=6.1 Score=40.31 Aligned_cols=88 Identities=10% Similarity=-0.097 Sum_probs=51.9
Q ss_pred eccccCC-CCCCCCccchhhHHHHHHc-----C--CCCC-CCCCCchhHHHHhhhcCCcHHH--H-Hhccc-------CC
Q 007864 318 VGFPVGS-PEKDTPKQFSQAHVKAFLS-----K--LDSL-PNFKGMPICLVNEYGTSKNLAK--R-VKKFV-------EK 378 (587)
Q Consensus 318 y~sLL~a-c~~g~l~~A~~l~~~M~~~-----G--l~pd-~~tynipiaLI~~y~k~G~l~e--r-Fd~M~-------~p 378 (587)
||.|=.. ...|+.++|.+.+.+.++. + ..|+ ..+|+ .+=..|...|+.++ . |++.. .+
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~---nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWG---NYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHH---HHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4444333 3578888888888776532 1 1222 23455 56677888888888 3 55432 11
Q ss_pred ----CCCcchhh-hhccc--CCChhHHHHHHHHHhhc
Q 007864 379 ----DAKNWSGP-GSYPS--TKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 379 ----d~vtYNsL-~gy~r--~G~~eeAl~Lf~eM~~~ 408 (587)
...+|+.+ .++.+ .+++++|++.|++-.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~ 167 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK 167 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 12345545 45544 34688999999888766
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=87.52 E-value=3.5 Score=37.15 Aligned_cols=74 Identities=7% Similarity=-0.095 Sum_probs=62.2
Q ss_pred HHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHH
Q 007864 465 LFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKG 543 (587)
Q Consensus 465 ~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A 543 (587)
+.|++...++...|..+ -..|.+.|++++|++.|++..... .-+...| .+-..+...|++++|
T Consensus 27 ~~~~~a~~~~~~~~~~l---------------g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A 90 (213)
T 1hh8_A 27 DAFSAVQDPHSRICFNI---------------GCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLA 90 (213)
T ss_dssp HHHHTSSSCCHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCChHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHH
Confidence 56777777888889999 999999999999999999987753 2245667 888899999999999
Q ss_pred HHHHHHHHHcC
Q 007864 544 GELHHKTLRTG 554 (587)
Q Consensus 544 ~~l~~~M~k~G 554 (587)
.+.+....+..
T Consensus 91 ~~~~~~al~~~ 101 (213)
T 1hh8_A 91 IKDLKEALIQL 101 (213)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 99999998853
No 117
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=87.51 E-value=2.8 Score=44.77 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=24.9
Q ss_pred CCcchhh-hhcccCCChhHHHHHHHHHhhc
Q 007864 380 AKNWSGP-GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 380 ~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
...|+.+ ..|.+.|++++|++.|++-.+.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~ 35 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIEL 35 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 3467778 8899999999999999998877
No 118
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=87.47 E-value=2.2 Score=35.55 Aligned_cols=56 Identities=14% Similarity=0.013 Sum_probs=42.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVD----YIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~----Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
-..|...|++++|.+.+++.... +-.+. ..++ .+-..+...|+.++|.+.+....+
T Consensus 96 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 96 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77889999999999999887643 21112 2455 777788899999999999988765
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=87.38 E-value=3.6 Score=39.88 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=45.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc-----CCCCCHH-HH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVD-----YIEANEF-TI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~-----Gi~PD~~-Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
-..|...|++++|++.|++.... +..+... +| .+-..|.+.|++++|...+...++
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 78899999999999999998741 3333443 66 888899999999999999887764
No 120
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=87.15 E-value=3 Score=42.08 Aligned_cols=120 Identities=13% Similarity=0.032 Sum_probs=85.1
Q ss_pred CCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH--HHHHHHHHHHHHHHHhhCccH
Q 007864 379 DAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI--ARLWAARRDVINGVVSIGEYV 455 (587)
Q Consensus 379 d~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty--L~aca~~~~lh~~m~k~~pd~ 455 (587)
+...|+.+ ..|.+.|++++|++.|++-.+. .|+...+ -.. ..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-------------------~p~~~~~~~~~~----~~~~~--------- 193 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW-------------------LEYESSFSNEEA----QKAQA--------- 193 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------------TTTCCCCCSHHH----HHHHH---------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------------------hhccccCChHHH----HHHHH---------
Confidence 45678889 9999999999999999988876 2222100 000 00000
Q ss_pred HHHHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH-HHHHH
Q 007864 456 CVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEA-NEFTI-DLCSA 533 (587)
Q Consensus 456 ~vynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~P-D~~Ty-sLL~a 533 (587)
-....|+.+ -..|.+.|++++|++.|++..+. .| +...| .+-.+
T Consensus 194 -----------------~~~~~~~nl---------------a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~ 239 (336)
T 1p5q_A 194 -----------------LRLASHLNL---------------AMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEA 239 (336)
T ss_dssp -----------------HHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred -----------------HHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 012456667 78899999999999999998875 34 45667 88899
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 007864 534 CLAGDDLRKGGELHHKTLRTGLHH-TEMKAVALG 566 (587)
Q Consensus 534 c~~~G~l~~A~~l~~~M~k~G~~p-d~~vynaLI 566 (587)
+...|++++|...+...++.. | +...+..|.
T Consensus 240 ~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~ 271 (336)
T 1p5q_A 240 HLAVNDFELARADFQKVLQLY--PNNKAAKTQLA 271 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHH
Confidence 999999999999999998863 4 334444443
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=86.84 E-value=3.4 Score=40.12 Aligned_cols=153 Identities=9% Similarity=-0.045 Sum_probs=95.1
Q ss_pred CCCCCccchhhHHHHHHcCCCCCC-----CCCCchhHHHHhhhcCCcHHH--H-Hhccc----C-CC----CCcchhh-h
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSLP-----NFKGMPICLVNEYGTSKNLAK--R-VKKFV----E-KD----AKNWSGP-G 387 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd~-----~tynipiaLI~~y~k~G~l~e--r-Fd~M~----~-pd----~vtYNsL-~ 387 (587)
..|+.++|.+.+...++..-..+. ..+. .+-..|...|+.++ . |.+.. . .+ ..+|+.+ .
T Consensus 87 ~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 163 (293)
T 2qfc_A 87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQY---YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIAN 163 (293)
T ss_dssp HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHH---HHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhccccCChhHHHHHHHHH---HHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 466777777777766654211000 1112 34445667778777 3 44322 1 22 2378888 8
Q ss_pred hcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHH
Q 007864 388 SYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFL 467 (587)
Q Consensus 388 gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vynaLI~~~vF 467 (587)
.|.+.|++++|++.|++..+.. .. .|+...
T Consensus 164 ~y~~~~~~~~A~~~~~kal~~~--~~--------------~~~~~~---------------------------------- 193 (293)
T 2qfc_A 164 IYAENGYLKKGIDLFEQILKQL--EA--------------LHDNEE---------------------------------- 193 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HH--------------SCCCHH----------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHHH--Hh--------------cCcccc----------------------------------
Confidence 8888999999998888776320 00 111100
Q ss_pred hcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHHH-HHHHHHhcCCCHH
Q 007864 468 DGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVD----YIEAN-EFTI-DLCSACLAGDDLR 541 (587)
Q Consensus 468 d~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~----Gi~PD-~~Ty-sLL~ac~~~G~l~ 541 (587)
.++.+|+.+ -..|.+.|++++|++.|++-... +.... ..+| .+-..+.+.|+.+
T Consensus 194 -----~~~~~~~nl---------------g~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 253 (293)
T 2qfc_A 194 -----FDVKVRYNH---------------AKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEE 253 (293)
T ss_dssp -----HHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCH
T ss_pred -----chHHHHHhH---------------HHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcH
Confidence 011356666 77899999999999999986543 22122 4567 8888899999999
Q ss_pred HH-HHHHHHHH
Q 007864 542 KG-GELHHKTL 551 (587)
Q Consensus 542 ~A-~~l~~~M~ 551 (587)
+| ...++...
T Consensus 254 ~Ai~~~~~~Al 264 (293)
T 2qfc_A 254 AEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99 77666554
No 122
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=86.70 E-value=1.5 Score=44.07 Aligned_cols=180 Identities=9% Similarity=-0.025 Sum_probs=108.4
Q ss_pred CCCCCccchhhHHHHHHcCCCCC------CCCCCchhHHHHhhhcCCcHHH--H-HhcccC-----CC----CCcchhh-
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDSL------PNFKGMPICLVNEYGTSKNLAK--R-VKKFVE-----KD----AKNWSGP- 386 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~pd------~~tynipiaLI~~y~k~G~l~e--r-Fd~M~~-----pd----~vtYNsL- 386 (587)
..|+.+.|...+.+.++.--..+ ..+++ .|=..|...|+.++ . |++..+ +| ..+|+.+
T Consensus 155 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 231 (383)
T 3ulq_A 155 YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS---LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIG 231 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH---HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 57888999988888775421111 12445 56678889999998 4 554331 11 2478889
Q ss_pred hhcccCCChhHHHHHHHHHhhcccC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-------HHHHHHHHhhCccHHHH
Q 007864 387 GSYPSTKSFHTNRLQAKRQLRRFIS-DVDSSYLPPEGCPNYKPPDDKFIARLWAAR-------RDVINGVVSIGEYVCVA 458 (587)
Q Consensus 387 ~gy~r~G~~eeAl~Lf~eM~~~~~~-Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~-------~~lh~~m~k~~pd~~vy 458 (587)
..|.+.|++++|++.|++-.+.... +- .|+....+...+.. ........+
T Consensus 232 ~~y~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------- 289 (383)
T 3ulq_A 232 LCKNSQSQYEDAIPYFKRAIAVFEESNI--------------LPSLPQAYFLITQIHYKLGKIDKAHEYHSK-------- 289 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHH--------
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhcc--------------chhHHHHHHHHHHHHHHCCCHHHHHHHHHH--------
Confidence 9999999999999999987761000 11 24432221111111 111111110
Q ss_pred HHHHHHHHHhcCCCCC-hhhhHHHHHhHHhhcCcCHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCHH-HH-HHHH
Q 007864 459 EILVMLLFLDGIKRPD-LVAWSSLLSVHEEWASRRVVLVISGFSLNGW---YAEALGLFQTMRVDYIEANEF-TI-DLCS 532 (587)
Q Consensus 459 naLI~~~vFd~M~~pd-vvTyNsLI~gy~km~~~dvvsLI~gy~k~G~---~~eAl~Lf~eM~~~Gi~PD~~-Ty-sLL~ 532 (587)
.+ ++......+. ...++.+ -..|.+.|+ +++|+.++++. +..|+.. .+ .+-.
T Consensus 290 --al--~~~~~~~~~~~~~~~~~l---------------~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 290 --GM--AYSQKAGDVIYLSEFEFL---------------KSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAK 347 (383)
T ss_dssp --HH--HHHHHHTCHHHHHHHHHH---------------HHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred --HH--HHHHHcCCHHHHHHHHHH---------------HHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHH
Confidence 00 2222222221 1224555 667788888 88888888876 4445544 44 7888
Q ss_pred HHhcCCCHHHHHHHHHHHHH
Q 007864 533 ACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 533 ac~~~G~l~~A~~l~~~M~k 552 (587)
.+...|+.++|.+.+....+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999988765
No 123
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=86.59 E-value=5.2 Score=36.13 Aligned_cols=123 Identities=11% Similarity=-0.000 Sum_probs=83.1
Q ss_pred CCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHhhCccHH
Q 007864 379 DAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI-ARLWAARRDVINGVVSIGEYVC 456 (587)
Q Consensus 379 d~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty-L~aca~~~~lh~~m~k~~pd~~ 456 (587)
....|..+ ..|.+.|++++|++.|++..+. .|+...+ ........
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------------------~~~~~~~~~~~~~~~~-------------- 83 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDF-------------------FIHTEEWDDQILLDKK-------------- 83 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------------------TTTCTTCCCHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------HhcccccchhhHHHHH--------------
Confidence 44567888 8899999999999999998865 2222111 00000000
Q ss_pred HHHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH-HHHHHH
Q 007864 457 VAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEA-NEFTI-DLCSAC 534 (587)
Q Consensus 457 vynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~P-D~~Ty-sLL~ac 534 (587)
..+ ....|..+ -..|.+.|++++|++.|++.... .| +...| .+-.++
T Consensus 84 --------~~~------~~~~~~~l---------------a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 132 (198)
T 2fbn_A 84 --------KNI------EISCNLNL---------------ATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVAN 132 (198)
T ss_dssp --------HHH------HHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred --------HHH------HHHHHHHH---------------HHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 000 02345666 77789999999999999998775 44 45566 888889
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 535 LAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 535 ~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
...|++++|.+.+...++..- -+..++..|.
T Consensus 133 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 163 (198)
T 2fbn_A 133 MYFGFLEEAKENLYKAASLNP-NNLDIRNSYE 163 (198)
T ss_dssp HHHTCHHHHHHHHHHHHHHST-TCHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCC-CcHHHHHHHH
Confidence 999999999999999987632 2344444443
No 124
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=86.38 E-value=3.8 Score=41.55 Aligned_cols=68 Identities=13% Similarity=-0.119 Sum_probs=52.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHH--HH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEF--TI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~--Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
=.++.+.|++++|++.|++-......|... .. ..-.++.+.|+.++|..+++++.... |+..++.+|-
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL~ 248 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAALK 248 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHh
Confidence 557899999999999999877544436522 33 56666778999999999999999864 5566777775
No 125
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=85.71 E-value=1.8 Score=45.89 Aligned_cols=156 Identities=9% Similarity=0.020 Sum_probs=102.7
Q ss_pred CCCCc-------cchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc--CCCC--Ccchhh-hhccc
Q 007864 327 KDTPK-------QFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV--EKDA--KNWSGP-GSYPS 391 (587)
Q Consensus 327 ~g~l~-------~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~--~pd~--vtYNsL-~gy~r 391 (587)
.|+++ +|..++.+.++.-.+.+...|. .+...+.+.|++++ . |++.. .|+. ..|... ..+.+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~---~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 368 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF---AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR 368 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH---HHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH
Confidence 46666 7788887776522233455566 78888888898888 4 77654 2432 468888 77888
Q ss_pred CCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCC-HHHH-HHHHH---H------HHHHHHHHHh-hCccHHHHH
Q 007864 392 TKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPD-DKFI-ARLWA---A------RRDVINGVVS-IGEYVCVAE 459 (587)
Q Consensus 392 ~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd-~~Ty-L~aca---~------~~~lh~~m~k-~~pd~~vyn 459 (587)
.|+.++|.++|++-.+. .|+ ...| -.+.. . ...+++..++ ...+..+|.
T Consensus 369 ~~~~~~A~~~~~~Al~~-------------------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~ 429 (530)
T 2ooe_A 369 AEGIKSGRMIFKKARED-------------------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL 429 (530)
T ss_dssp HHHHHHHHHHHHHHHTC-------------------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHhc-------------------cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHH
Confidence 88899999999888765 333 2223 11111 1 1566666666 545677787
Q ss_pred HHHHH-----------HHHhcCCC-----C--ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007864 460 ILVML-----------LFLDGIKR-----P--DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVD 519 (587)
Q Consensus 460 aLI~~-----------~vFd~M~~-----p--dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~ 519 (587)
.+++. .+|++... | ....|... +.-..+.|+.+.+.++++++.+.
T Consensus 430 ~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~---------------~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 430 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF---------------LAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH---------------HHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77776 45554321 1 23378777 88888899999999999988763
No 126
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=85.60 E-value=0.77 Score=42.62 Aligned_cols=77 Identities=9% Similarity=-0.032 Sum_probs=52.9
Q ss_pred CCCCccchhhHHHHHHcCCCCC-CCCCCchhH----------------HHHhhhcCCcHHH--H-Hhccc---CCCCCcc
Q 007864 327 KDTPKQFSQAHVKAFLSKLDSL-PNFKGMPIC----------------LVNEYGTSKNLAK--R-VKKFV---EKDAKNW 383 (587)
Q Consensus 327 ~g~l~~A~~l~~~M~~~Gl~pd-~~tynipia----------------LI~~y~k~G~l~e--r-Fd~M~---~pd~vtY 383 (587)
.|++++|...+...++.. |+ ...+. . +-..|.+.|++++ . |++.. ..+...|
T Consensus 17 ~g~~~~A~~~~~~al~~~--p~~~~~~~---~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 91 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIALN--IDRTEMYY---WTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCL 91 (208)
T ss_dssp TTCHHHHHHHHHHHHHHC--HHHHHHHH---HHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHhC--CCChHHHH---HhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 566777777777666542 21 11222 2 6667788888888 4 66543 3466788
Q ss_pred hhh-hhcccCCChhHHHHHHHHHhhc
Q 007864 384 SGP-GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 384 NsL-~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
..+ ..|.+.|++++|++.|++..+.
T Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 92 EACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 888 8888889999999999888877
No 127
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.00 E-value=5.3 Score=33.15 Aligned_cols=66 Identities=14% Similarity=0.043 Sum_probs=52.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEAN----EFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD----~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaL 565 (587)
-..+.+.|++++|++.|++..+ ..|+ ...| .+-..+.+.|++++|...+...++..-. +...+..+
T Consensus 35 a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 105 (148)
T 2dba_A 35 GNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRR 105 (148)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHH
Confidence 8889999999999999999876 4577 5677 8888899999999999999999886321 34444444
No 128
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=84.74 E-value=4.8 Score=30.66 Aligned_cols=66 Identities=20% Similarity=0.136 Sum_probs=51.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEA-NEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~P-D~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaL 565 (587)
-..|.+.|++++|++.|++..+.. | +...+ .+-..+.+.|++++|...+....+..- .+...+..|
T Consensus 16 a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l 83 (91)
T 1na3_A 16 GNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNL 83 (91)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHH
Confidence 777899999999999999987653 4 45566 888889999999999999999988642 234444444
No 129
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=84.46 E-value=4.3 Score=33.17 Aligned_cols=63 Identities=10% Similarity=0.023 Sum_probs=52.7
Q ss_pred ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHH
Q 007864 474 DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTL 551 (587)
Q Consensus 474 dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~ 551 (587)
+...|..+ -..|.+.|++++|++.|++.... .|+ ...| .+-..+...|+.++|...+...+
T Consensus 18 ~~~~~~~l---------------g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 18 NMLLRFTL---------------GKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHH---------------HHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56677777 88899999999999999998875 344 4566 88888999999999999999887
Q ss_pred Hc
Q 007864 552 RT 553 (587)
Q Consensus 552 k~ 553 (587)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 130
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=84.45 E-value=4.2 Score=40.33 Aligned_cols=57 Identities=12% Similarity=-0.080 Sum_probs=44.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC--C--CHHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIE--A--NEFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~--P--D~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
-..|...|++++|...+++-....-. + ...+| .+-..+...|++++|...++...+.
T Consensus 142 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 142 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66788999999999999987653221 1 23456 7777888899999999999988754
No 131
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=84.43 E-value=4 Score=32.38 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=47.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEA-NEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~P-D~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
-..+.+.|++++|++.|++..+. .| +...| .+-.++.+.|++++|.+.+...++..
T Consensus 11 g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 11 GNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 77889999999999999998765 44 45566 88888999999999999999998753
No 132
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=84.34 E-value=3.3 Score=34.29 Aligned_cols=56 Identities=18% Similarity=0.029 Sum_probs=47.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
-..|.+.|++++|++.|++..+. .|+ ...+ .+-.++.+.|+.++|...+...++..
T Consensus 34 g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 34 GSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88899999999999999998875 344 4556 88888999999999999999888753
No 133
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=84.17 E-value=4.2 Score=39.98 Aligned_cols=192 Identities=10% Similarity=-0.021 Sum_probs=111.2
Q ss_pred CCCCCccchhhHHHHHHcCCC-CC----CCCCCchhHHHHhhhcCCc--------------------HHH--H-Hhccc-
Q 007864 326 EKDTPKQFSQAHVKAFLSKLD-SL----PNFKGMPICLVNEYGTSKN--------------------LAK--R-VKKFV- 376 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~-pd----~~tynipiaLI~~y~k~G~--------------------l~e--r-Fd~M~- 376 (587)
..|++++|...+.+.++..-. .+ ..++. .+-..|...|+ +++ . |++..
T Consensus 99 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 175 (406)
T 3sf4_A 99 VLGNFDEAIVCCQRHLDISRELNDKVGEARALY---NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS 175 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH---HHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcccccchHHHHH---HHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 578888888888877643211 11 22455 67777888888 766 3 44321
Q ss_pred ---C-C----CCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 007864 377 ---E-K----DAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVING 447 (587)
Q Consensus 377 ---~-p----d~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~ 447 (587)
. . ...+|+.+ ..|...|++++|++.|++..+.. .- .++......++.....++..
T Consensus 176 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~--------------~~~~~~~~~~~~~la~~~~~ 239 (406)
T 3sf4_A 176 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--KE--------------FGDKAAERRAYSNLGNAYIF 239 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH--HH--------------TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--Hh--------------cCCcHHHHHHHHHHHHHHHH
Confidence 1 1 23578889 99999999999999999887541 11 23322111111110000000
Q ss_pred HHhhCccHHHHHHHHHHHHHhcCCCC--ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC
Q 007864 448 VVSIGEYVCVAEILVMLLFLDGIKRP--DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVD----YI 521 (587)
Q Consensus 448 m~k~~pd~~vynaLI~~~vFd~M~~p--dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~----Gi 521 (587)
..+...-...+...+ +++.....+ ...+|+.+ -..|.+.|++++|.+.|++.... +-
T Consensus 240 ~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~l---------------a~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 302 (406)
T 3sf4_A 240 LGEFETASEYYKKTL--LLARQLKDRAVEAQSCYSL---------------GNTYTLLQDYEKAIDYHLKHLAIAQELND 302 (406)
T ss_dssp TTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cCChHHHHHHHHHHH--HHHHhCcCchHHHHHHHHH---------------HHHHHHhCcHHHHHHHHHHHHHHHHhcCC
Confidence 000000000011111 222222211 14467777 88899999999999999987653 21
Q ss_pred CCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 522 EAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 522 ~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
.++ ..++ .+-..+...|++++|.+.+....+.
T Consensus 303 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 303 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 112 4466 8888889999999999998887653
No 134
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=83.69 E-value=1.2 Score=35.50 Aligned_cols=29 Identities=3% Similarity=-0.100 Sum_probs=23.8
Q ss_pred CCcchhh-hhcccCCChhHHHHHHHHHhhc
Q 007864 380 AKNWSGP-GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 380 ~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
...|..+ ..+.+.|++++|++.|++..+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 33 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA 33 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3457778 8888999999999999888766
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=83.50 E-value=4 Score=33.15 Aligned_cols=67 Identities=4% Similarity=-0.101 Sum_probs=53.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEA-NEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~P-D~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
-..|.+.|++++|++.|++.... .| +...+ .+-..+...|++++|.+.++..++..-. +...+..+.
T Consensus 23 ~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 23 GNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 88899999999999999998764 34 55667 8888899999999999999999886422 344544443
No 136
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=83.43 E-value=13 Score=30.65 Aligned_cols=67 Identities=10% Similarity=-0.007 Sum_probs=52.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
-..|.+.|++++|+..|++..... |+ ...| .+-..+...|++++|...+...++..-. +...+..+.
T Consensus 16 g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 16 GNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 888999999999999999977653 44 5566 8888889999999999999999886422 344554444
No 137
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=83.37 E-value=5.3 Score=36.78 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=48.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHH-TEMKAVALG 566 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~p-d~~vynaLI 566 (587)
-..|.+.|++++|+..|++..+. .|+ ...| .+-..+...|++++|.+.++..++.. | +...+..|.
T Consensus 61 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg 129 (208)
T 3urz_A 61 ALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLG 129 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHH
Confidence 66788889999999999887764 454 4455 77777888899999999888888753 4 344444443
No 138
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=82.86 E-value=5 Score=32.24 Aligned_cols=57 Identities=18% Similarity=0.133 Sum_probs=47.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
-..|.+.|++++|...|++..... ..+...+ .+-..+...|++++|...+....+..
T Consensus 11 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 68 (131)
T 1elr_A 11 GNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 778899999999999999988753 2245666 88888899999999999999988754
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=82.18 E-value=6.2 Score=31.56 Aligned_cols=68 Identities=7% Similarity=-0.081 Sum_probs=53.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
-..+...|++++|.+.|++..... ..+...+ .+-..+...|++++|.+.+....+..- .+...+..+.
T Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~ 87 (131)
T 2vyi_A 19 GNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMG 87 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHH
Confidence 888999999999999999987753 2255667 888889999999999999999988642 2344444443
No 140
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=81.74 E-value=2.3 Score=38.58 Aligned_cols=119 Identities=13% Similarity=0.051 Sum_probs=72.8
Q ss_pred HHHHhhhcCCcHHH--H-HhcccC---CCC----------------Ccchhh-hhcccCCChhHHHHHHHHHhhcccCCC
Q 007864 357 CLVNEYGTSKNLAK--R-VKKFVE---KDA----------------KNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDV 413 (587)
Q Consensus 357 aLI~~y~k~G~l~e--r-Fd~M~~---pd~----------------vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv 413 (587)
.+=..|.+.|++++ . |++... .+. ..|..+ ..|.+.|++++|++.|++..+.
T Consensus 43 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----- 117 (198)
T 2fbn_A 43 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI----- 117 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 44455667777777 4 554321 222 678888 9999999999999999988766
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCH
Q 007864 414 DSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRV 493 (587)
Q Consensus 414 ~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dv 493 (587)
.|+ +...|..+
T Consensus 118 --------------~p~-------------------------------------------~~~~~~~l------------ 128 (198)
T 2fbn_A 118 --------------DKN-------------------------------------------NVKALYKL------------ 128 (198)
T ss_dssp --------------STT-------------------------------------------CHHHHHHH------------
T ss_pred --------------Ccc-------------------------------------------cHHHHHHH------------
Confidence 332 22345555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HH-HHHHHHhcCCCHHHHH-HHHHHHHHcC
Q 007864 494 VLVISGFSLNGWYAEALGLFQTMRVDYIEANEF-TI-DLCSACLAGDDLRKGG-ELHHKTLRTG 554 (587)
Q Consensus 494 vsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~-Ty-sLL~ac~~~G~l~~A~-~l~~~M~k~G 554 (587)
-..|.+.|++++|++.|++-.+. .|+.. .+ .+-..+...++.+++. ..+..|...|
T Consensus 129 ---g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 129 ---GVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp ---HHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred ---HHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66788899999999999987764 45544 44 5555555556665555 4455554443
No 141
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=81.54 E-value=5.3 Score=39.22 Aligned_cols=172 Identities=10% Similarity=0.003 Sum_probs=93.9
Q ss_pred CCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-HhcccC-----CC----CCcchhh-hhcccCC
Q 007864 327 KDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFVE-----KD----AKNWSGP-GSYPSTK 393 (587)
Q Consensus 327 ~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~~-----pd----~vtYNsL-~gy~r~G 393 (587)
.++++.|...+.+. ...|-..|++++ . |.+... .+ ..+|+.+ ..|.+.|
T Consensus 29 ~~~~~~A~~~~~~a------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g 90 (307)
T 2ifu_A 29 KPDYDSAASEYAKA------------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ 90 (307)
T ss_dssp SCCHHHHHHHHHHH------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHH------------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Confidence 35667776666543 345667788877 3 443321 11 3578889 9999999
Q ss_pred ChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCCC
Q 007864 394 SFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKP-PDDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKR 472 (587)
Q Consensus 394 ~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~-Pd~~TyL~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~~ 472 (587)
++++|++.|++-.+. -. . -|......++.+...++.. .+...-...|.--+ +++.....
T Consensus 91 ~~~~A~~~~~~Al~l---~~--------------~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al--~~~~~~~~ 150 (307)
T 2ifu_A 91 RMPEAVQYIEKASVM---YV--------------ENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA--AVFENEER 150 (307)
T ss_dssp CGGGGHHHHHHHHHH---HH--------------TTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH--HHHHHTTC
T ss_pred CHHHHHHHHHHHHHH---HH--------------HcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH--HHHHhCCC
Confidence 999999999876543 11 1 1111111111111111100 00000000111111 22322211
Q ss_pred C--ChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCHH-HH-HHHHHHhcCCCHHHHH
Q 007864 473 P--DLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVD----YIEANEF-TI-DLCSACLAGDDLRKGG 544 (587)
Q Consensus 473 p--dvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~----Gi~PD~~-Ty-sLL~ac~~~G~l~~A~ 544 (587)
+ -..+|+.+ -..|.+.|++++|++.|++.... +..++.. ++ .+...+...|++++|.
T Consensus 151 ~~~~~~~~~~l---------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 151 LRQAAELIGKA---------------SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 1 13456666 77888899999999998887652 2222222 55 6666777779999999
Q ss_pred HHHHHHH
Q 007864 545 ELHHKTL 551 (587)
Q Consensus 545 ~l~~~M~ 551 (587)
..++...
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8888876
No 142
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=81.22 E-value=1.5 Score=46.90 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=33.1
Q ss_pred HhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhcccCCChhHHHHHHHHHhhc
Q 007864 360 NEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 360 ~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
..|.+.|++++ . |++.. ..+...|+.+ ..|.+.|++++|++.|++-.+.
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 69 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 69 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34556666666 3 54332 2346677888 8888888888888888877665
No 143
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=81.21 E-value=9.8 Score=37.82 Aligned_cols=60 Identities=13% Similarity=0.019 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 495 LVISGFSLNGWYAEALGLFQTMRVDYI-EAN----EFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 495 sLI~gy~k~G~~~eAl~Lf~eM~~~Gi-~PD----~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
.+-..|...|++++|++.|++.....- .++ ..++ .+-..+...|++++|.+.++...+..
T Consensus 228 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 228 NLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 344556666777777777766655311 112 1255 66666667777777777777776653
No 144
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=81.07 E-value=8.7 Score=38.00 Aligned_cols=80 Identities=5% Similarity=-0.260 Sum_probs=52.1
Q ss_pred CCCCCccchhhHHHHHHcCCCC-CC----CCCCchhHHHHhhhcCCcHHH--H-Hhccc-------CC----CCCcchhh
Q 007864 326 EKDTPKQFSQAHVKAFLSKLDS-LP----NFKGMPICLVNEYGTSKNLAK--R-VKKFV-------EK----DAKNWSGP 386 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~p-d~----~tynipiaLI~~y~k~G~l~e--r-Fd~M~-------~p----d~vtYNsL 386 (587)
..|++++|.+.+.+..+..-.. +. .+++ .+-..|...|++++ . +++.. .+ ....++.+
T Consensus 65 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 141 (373)
T 1hz4_A 65 CKGELTRSLALMQQTEQMARQHDVWHYALWSLI---QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 141 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH---HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHH
Confidence 4678888888888776532111 11 1123 45666788899888 3 54332 11 12356677
Q ss_pred -hhcccCCChhHHHHHHHHHhhc
Q 007864 387 -GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 387 -~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
..|...|++++|.+.+++-...
T Consensus 142 a~~~~~~g~~~~A~~~~~~al~~ 164 (373)
T 1hz4_A 142 AQLLWAWARLDEAEASARSGIEV 164 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 8889999999999999987764
No 145
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=80.93 E-value=19 Score=34.66 Aligned_cols=57 Identities=11% Similarity=0.103 Sum_probs=45.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc-CCCCC-----HHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVD-YIEAN-----EFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~-Gi~PD-----~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
-..|...|++++|++.|++.... ...|+ ..+| .+-..|.+.|++++|...++..++.
T Consensus 162 g~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 88899999999999999987632 12223 2577 8889999999999999999987653
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=80.33 E-value=6.5 Score=30.86 Aligned_cols=67 Identities=15% Similarity=-0.043 Sum_probs=52.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEA-NEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~P-D~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
...+...|++++|.+.|++.... .| +...+ .+-..+...|++++|...+....+..-. +...+..+.
T Consensus 11 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a 79 (118)
T 1elw_A 11 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKA 79 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 78889999999999999998775 34 45566 8888888999999999999999886422 344444443
No 147
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=80.12 E-value=18 Score=33.31 Aligned_cols=173 Identities=10% Similarity=-0.014 Sum_probs=103.3
Q ss_pred ccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc-CCCCCcchhh-hhcccCC----ChhHHHHH
Q 007864 331 KQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV-EKDAKNWSGP-GSYPSTK----SFHTNRLQ 401 (587)
Q Consensus 331 ~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~-~pd~vtYNsL-~gy~r~G----~~eeAl~L 401 (587)
.+|.+.+.+..+.| |...+. .|=..|...++.++ . |.+-- .-+...++.| ..|.+ | +.++|++.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~---~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQY---YLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHH---HHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHH---HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677777777765 334444 56666777888888 5 66544 3466788888 88887 6 89999999
Q ss_pred HHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCCC-CC----hh
Q 007864 402 AKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKR-PD----LV 476 (587)
Q Consensus 402 f~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~~-pd----vv 476 (587)
|++-.+. |. |.....|..+-.. -..+..|..-. + +.|+...+ .+ ..
T Consensus 76 ~~~A~~~---g~---------------~~a~~~Lg~~y~~------g~g~~~d~~~A--~---~~~~~A~~~~~~~~~~~ 126 (212)
T 3rjv_A 76 AEKAVEA---GS---------------KSGEIVLARVLVN------RQAGATDVAHA--I---TLLQDAARDSESDAAVD 126 (212)
T ss_dssp HHHHHHT---TC---------------HHHHHHHHHHHTC------GGGSSCCHHHH--H---HHHHHHTSSTTSHHHHH
T ss_pred HHHHHHC---CC---------------HHHHHHHHHHHHc------CCCCccCHHHH--H---HHHHHHHHcCCCcchHH
Confidence 9988766 55 1111101111000 00001111000 0 23333222 12 46
Q ss_pred hhHHHHHhHHhhcCcCHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcC------CCHHHHHH
Q 007864 477 AWSSLLSVHEEWASRRVVLVISGFSL----NGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAG------DDLRKGGE 545 (587)
Q Consensus 477 TyNsLI~gy~km~~~dvvsLI~gy~k----~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~------G~l~~A~~ 545 (587)
+++.| =..|.. .++.++|+++|++-.+.+ .+...+ .|-..|... .+.++|..
T Consensus 127 a~~~L---------------g~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~ 189 (212)
T 3rjv_A 127 AQMLL---------------GLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALH 189 (212)
T ss_dssp HHHHH---------------HHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHH
T ss_pred HHHHH---------------HHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Confidence 66666 556666 778999999999987762 233344 555555432 38999999
Q ss_pred HHHHHHHcCCC
Q 007864 546 LHHKTLRTGLH 556 (587)
Q Consensus 546 l~~~M~k~G~~ 556 (587)
.+....+.|..
T Consensus 190 ~~~~A~~~g~~ 200 (212)
T 3rjv_A 190 WLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHTCH
T ss_pred HHHHHHHcCCH
Confidence 99999998854
No 148
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=79.95 E-value=0.19 Score=42.05 Aligned_cols=79 Identities=13% Similarity=-0.078 Sum_probs=59.9
Q ss_pred CCCCccchhhHHHHHHcCC--CCCCCCCCchhHHHHhhhcCCcHHH--H-Hhccc---CCCCCcchhh-hhcccCCChhH
Q 007864 327 KDTPKQFSQAHVKAFLSKL--DSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFV---EKDAKNWSGP-GSYPSTKSFHT 397 (587)
Q Consensus 327 ~g~l~~A~~l~~~M~~~Gl--~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~---~pd~vtYNsL-~gy~r~G~~ee 397 (587)
.|+.++|...+.+.++.+. +.+...+. .|-..|.+.|++++ . |++.. ..+...|..+ ..|.+.|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~---~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYL---GLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence 5788999999999987642 22344556 78888999999999 5 77654 2356788889 99999999999
Q ss_pred HHHHHHHHhhc
Q 007864 398 NRLQAKRQLRR 408 (587)
Q Consensus 398 Al~Lf~eM~~~ 408 (587)
|++.|++..+.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998876
No 149
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.82 E-value=8.2 Score=37.53 Aligned_cols=60 Identities=8% Similarity=-0.007 Sum_probs=46.8
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhc----CCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 007864 497 ISGFSLN-GWYAEALGLFQTMRVD----YIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRTGLH 556 (587)
Q Consensus 497 I~gy~k~-G~~~eAl~Lf~eM~~~----Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~ 556 (587)
-..|.+. |++++|++.|++-... |-.+. ..+| .+-..+.+.|++++|...++...+....
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 7778886 9999999999987653 11111 3467 8888999999999999999999986543
No 150
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.45 E-value=11 Score=37.93 Aligned_cols=56 Identities=9% Similarity=-0.051 Sum_probs=45.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc----CCCCCHH-HH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVD----YIEANEF-TI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~----Gi~PD~~-Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
-..|-..|++++|.+++++.... +-+|... +| .+...|...|++++|..++....+
T Consensus 142 a~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 142 ATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 88899999999999999987653 2233333 45 888899999999999999988764
No 151
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=79.09 E-value=10 Score=37.15 Aligned_cols=56 Identities=9% Similarity=-0.091 Sum_probs=43.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVD----YIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~----Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
-..|.+ |++++|++.|++-... |-.+. ..++ .+-..+.+.|++++|...+...++.
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 667777 9999999999886542 11111 3566 8888899999999999999988763
No 152
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=79.09 E-value=10 Score=36.90 Aligned_cols=144 Identities=9% Similarity=-0.006 Sum_probs=91.5
Q ss_pred HhcccCCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH----HHHHH
Q 007864 372 VKKFVEKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAAR----RDVIN 446 (587)
Q Consensus 372 Fd~M~~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~----~~lh~ 446 (587)
++.....+...+-.+ ..+.+.|++++|.+.|++..+. .|+........+.. ...-+
T Consensus 109 l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-------------------~P~~~~a~~~la~~~~~~g~~~~ 169 (287)
T 3qou_A 109 LDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL-------------------SNQNGEIGLLLAETLIALNRSED 169 (287)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------TTSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh-------------------CCcchhHHHHHHHHHHHCCCHHH
Confidence 444333344556667 8889999999999999999988 77665441111111 00000
Q ss_pred HHHhhCccHHHHHHHHHHHHHhcCC--CCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007864 447 GVVSIGEYVCVAEILVMLLFLDGIK--RPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEAN 524 (587)
Q Consensus 447 ~m~k~~pd~~vynaLI~~~vFd~M~--~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD 524 (587)
.. ..+++.. .|+...+... ....+.+.|+.++|.+.|++.... .||
T Consensus 170 A~----------------~~l~~~~~~~p~~~~~~~~--------------~~~~l~~~~~~~~a~~~l~~al~~--~P~ 217 (287)
T 3qou_A 170 AE----------------AVLXTIPLQDQDTRYQGLV--------------AQIELLXQAADTPEIQQLQQQVAE--NPE 217 (287)
T ss_dssp HH----------------HHHTTSCGGGCSHHHHHHH--------------HHHHHHHHHTSCHHHHHHHHHHHH--CTT
T ss_pred HH----------------HHHHhCchhhcchHHHHHH--------------HHHHHHhhcccCccHHHHHHHHhc--CCc
Confidence 00 4455543 3544333322 023367778888899999887765 465
Q ss_pred H-HHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 007864 525 E-FTI-DLCSACLAGDDLRKGGELHHKTLRTGLHH-TEMKAVALG 566 (587)
Q Consensus 525 ~-~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~p-d~~vynaLI 566 (587)
. ..+ .+-..+...|+.++|...+..+++..-.. +...+..|+
T Consensus 218 ~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~ 262 (287)
T 3qou_A 218 DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQ 262 (287)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 4 455 88899999999999999999999864332 244555554
No 153
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=79.05 E-value=8.1 Score=34.57 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=48.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANE-FTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~-~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
=..|.+.|++++|++.|++.... .|+. ..| .+-.++...|++++|...++..++..
T Consensus 43 g~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 43 AYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 77889999999999999998874 5654 455 88888999999999999999999864
No 154
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=79.03 E-value=21 Score=31.27 Aligned_cols=56 Identities=16% Similarity=0.037 Sum_probs=43.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc----CCCC-C-HHHH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVD----YIEA-N-EFTI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~----Gi~P-D-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
-..|...|++++|.+.|++-... |-.| . ...+ .+-..+...|++++|...+.+..+
T Consensus 73 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 78899999999999999886653 2122 1 2345 677778889999999999988874
No 155
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=78.81 E-value=6.8 Score=39.27 Aligned_cols=79 Identities=11% Similarity=-0.010 Sum_probs=55.6
Q ss_pred CCCCCccchhhHHHHHHcCCC-CC----CCCCCchhHHHHhhhcCCcHHH--H-Hhccc----C-C-----CCCcchhh-
Q 007864 326 EKDTPKQFSQAHVKAFLSKLD-SL----PNFKGMPICLVNEYGTSKNLAK--R-VKKFV----E-K-----DAKNWSGP- 386 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~-pd----~~tynipiaLI~~y~k~G~l~e--r-Fd~M~----~-p-----d~vtYNsL- 386 (587)
..|+.++|...+.+..+..-. +| ..++. .|-..|...|+.++ . |.+.. . + ...+|+.+
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~---~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHF---KVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHH---HHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 478899999999888754211 22 23444 66677888899887 3 44321 1 1 24578899
Q ss_pred hhcccCCChhHHHHHHHHHhh
Q 007864 387 GSYPSTKSFHTNRLQAKRQLR 407 (587)
Q Consensus 387 ~gy~r~G~~eeAl~Lf~eM~~ 407 (587)
..|.+.|++++|++.|++-.+
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~ 210 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALE 210 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999988765
No 156
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=78.76 E-value=8.6 Score=36.11 Aligned_cols=58 Identities=14% Similarity=0.058 Sum_probs=45.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCC-CCC-HHHH-HHHHHHhc--------CCCHHHHHHHHHHHHHcC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYI-EAN-EFTI-DLCSACLA--------GDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi-~PD-~~Ty-sLL~ac~~--------~G~l~~A~~l~~~M~k~G 554 (587)
-..|.+.|++++|+..|++.....- .|+ ...+ .+-.++.. .|++++|...+..+++..
T Consensus 59 g~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 59 ARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 6678899999999999999887521 222 2345 66666777 999999999999998864
No 157
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=78.58 E-value=3.2 Score=44.12 Aligned_cols=56 Identities=9% Similarity=-0.121 Sum_probs=45.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc------CCCCCHH-HH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVD------YIEANEF-TI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~------Gi~PD~~-Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
...|...|++++|+.++++...- .-.|+.. ++ .|-..|...|++++|..++.+..+
T Consensus 336 ~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 336 MDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999987642 2445554 45 888889999999999999887753
No 158
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=78.55 E-value=9.5 Score=38.40 Aligned_cols=110 Identities=12% Similarity=0.017 Sum_probs=76.0
Q ss_pred CCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH--HHHHHHHHHHHHHHHhhCccHH
Q 007864 380 AKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI--ARLWAARRDVINGVVSIGEYVC 456 (587)
Q Consensus 380 ~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty--L~aca~~~~lh~~m~k~~pd~~ 456 (587)
...|..+ ..|.+.|++++|+..|++-... .|+...| ..-.... ..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-------------------~p~~~~~~~~~~~~~~---~~---------- 226 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY-------------------MGDDFMFQLYGKYQDM---AL---------- 226 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH-------------------SCHHHHHTCCHHHHHH---HH----------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------------------hccchhhhhcccHHHH---HH----------
Confidence 3457788 9999999999999999998766 5655544 1110000 00
Q ss_pred HHHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH-HHHHHH
Q 007864 457 VAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEA-NEFTI-DLCSAC 534 (587)
Q Consensus 457 vynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~P-D~~Ty-sLL~ac 534 (587)
.+ ....|+.+ -..|.+.|++++|++.|++..+. .| +...| .+-.++
T Consensus 227 --------~l-------~~~~~~nl---------------a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~ 274 (338)
T 2if4_A 227 --------AV-------KNPCHLNI---------------AACLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAK 274 (338)
T ss_dssp --------HH-------HTHHHHHH---------------HHHHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred --------HH-------HHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 00 01246666 67788889999999998887764 35 45666 888888
Q ss_pred hcCCCHHHHHHHHHHHHHc
Q 007864 535 LAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 535 ~~~G~l~~A~~l~~~M~k~ 553 (587)
...|++++|...+...++.
T Consensus 275 ~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 275 AELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HTTTCHHHHHHHHHHTTC-
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8899999999888877653
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=78.41 E-value=7.9 Score=32.83 Aligned_cols=55 Identities=5% Similarity=0.008 Sum_probs=46.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH-H-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFT-I-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~T-y-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
=..|.+.|++++|++.|++-.+. .|+... | .+-.++.+.|++++|.+.+...++.
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~ 71 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 55688999999999999997764 566554 5 7888899999999999999988764
No 160
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=78.23 E-value=3.5 Score=44.76 Aligned_cols=56 Identities=14% Similarity=-0.019 Sum_probs=45.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc-----C-CCCCHH-HH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVD-----Y-IEANEF-TI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~-----G-i~PD~~-Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
-..|...|++++|+.++++...- | -.|+.. ++ .|-..|...|++++|..++.+..+
T Consensus 358 a~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 358 SEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999986642 2 335554 45 888889999999999999987763
No 161
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=77.72 E-value=13 Score=32.38 Aligned_cols=56 Identities=14% Similarity=0.006 Sum_probs=47.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEA-NEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~P-D~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
-..+.+.|++++|+..|++.... .| |...| .+-.++...|++++|...+...++..
T Consensus 28 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 28 AFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 77889999999999999988764 45 45556 78888899999999999999998864
No 162
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=77.52 E-value=37 Score=35.27 Aligned_cols=48 Identities=13% Similarity=0.100 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCC---CHHHHHHHHHHHHHcC
Q 007864 504 GWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGD---DLRKGGELHHKTLRTG 554 (587)
Q Consensus 504 G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G---~l~~A~~l~~~M~k~G 554 (587)
++.++|++.|++..+.| +...+ .+-..+.+.| +.++|.+.+....+.|
T Consensus 310 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~ 361 (490)
T 2xm6_A 310 KNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG 361 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC
Confidence 56666666666665554 23334 4444444444 5666666666666654
No 163
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=77.49 E-value=9 Score=39.39 Aligned_cols=65 Identities=5% Similarity=-0.154 Sum_probs=50.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHH-TEMKAVAL 565 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~p-d~~vynaL 565 (587)
-..|.+.|++++|++.+++..+. .|+ ...| .+-.++...|++++|.+.++...+.. | +...+..|
T Consensus 280 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l 347 (370)
T 1ihg_A 280 GACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAEL 347 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 77889999999999999988764 454 5566 88888999999999999999988763 4 34444444
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=77.42 E-value=10 Score=40.03 Aligned_cols=111 Identities=13% Similarity=-0.002 Sum_probs=78.5
Q ss_pred CCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHH
Q 007864 379 DAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCV 457 (587)
Q Consensus 379 d~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~v 457 (587)
+...|+.+ ..|.+.|++++|+..|++-.+. .|+...+-.-.. .++..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~-------------------~p~~~~~~~~~~--~~~~~----------- 314 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW-------------------LEMEYGLSEKES--KASES----------- 314 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------HTTCCSCCHHHH--HHHHH-----------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-------------------hcccccCChHHH--HHHHH-----------
Confidence 34578888 9999999999999999988765 222100000000 00000
Q ss_pred HHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH-HHHHHHh
Q 007864 458 AEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEA-NEFTI-DLCSACL 535 (587)
Q Consensus 458 ynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~P-D~~Ty-sLL~ac~ 535 (587)
-....|+-+ -..|.+.|++++|+..|++..+. .| +...| .+-.++.
T Consensus 315 ---------------~~~~~~~nl---------------a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~ 362 (457)
T 1kt0_A 315 ---------------FLLAAFLNL---------------AMCYLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQL 362 (457)
T ss_dssp ---------------HHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHH
T ss_pred ---------------HHHHHHHHH---------------HHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHH
Confidence 012356666 77889999999999999998775 34 45667 8889999
Q ss_pred cCCCHHHHHHHHHHHHHc
Q 007864 536 AGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 536 ~~G~l~~A~~l~~~M~k~ 553 (587)
+.|++++|...+...++.
T Consensus 363 ~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 363 LMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 999999999999999875
No 165
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=76.69 E-value=16 Score=33.91 Aligned_cols=77 Identities=12% Similarity=0.028 Sum_probs=62.7
Q ss_pred HHHHHhHHhhcCcC-HH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 007864 479 SSLLSVHEEWASRR-VV-LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGL 555 (587)
Q Consensus 479 NsLI~gy~km~~~d-vv-sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~ 555 (587)
-.+|.+|.+++.-+ .| .-++.+.+.|+-++-.+++.++.. ..+|+.... -+-+||.+.|+..++.++..+.-++|+
T Consensus 78 KrVi~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 78 KSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 35678888877543 33 668899999999999999998543 456777777 999999999999999999999999997
Q ss_pred C
Q 007864 556 H 556 (587)
Q Consensus 556 ~ 556 (587)
.
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 5
No 166
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=76.35 E-value=20 Score=27.89 Aligned_cols=58 Identities=14% Similarity=0.004 Sum_probs=47.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCH-H-HH-HHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANE-F-TI-DLCSACLAGDDLRKGGELHHKTLRTGLH 556 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~-~-Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~ 556 (587)
-..+.+.|++++|++.|++..+. .|+. . .| .+-.++...|++++|.+.+...++..-.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 45678899999999999998875 4554 4 66 7888888999999999999999987533
No 167
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=76.33 E-value=16 Score=30.99 Aligned_cols=56 Identities=9% Similarity=-0.089 Sum_probs=47.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
-..+.+.|++++|.+.|++.... .|+ ...| .+-.++.+.|++++|...++..++..
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 66788999999999999998764 454 4555 78888899999999999999998865
No 168
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=76.09 E-value=5 Score=32.49 Aligned_cols=30 Identities=3% Similarity=-0.169 Sum_probs=25.9
Q ss_pred CCCcchhh-hhcccCCChhHHHHHHHHHhhc
Q 007864 379 DAKNWSGP-GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 379 d~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
|...|..+ ..|.+.|++++|++.|++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 36 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET 36 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45678888 9999999999999999988876
No 169
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=75.90 E-value=18 Score=37.64 Aligned_cols=184 Identities=10% Similarity=-0.040 Sum_probs=113.9
Q ss_pred CCCCccchhhHHHHHHcCCCCCCCCCCchhHHHHhhhc----CCcHHH--H-HhcccC-CCCCcchhh-hhccc----CC
Q 007864 327 KDTPKQFSQAHVKAFLSKLDSLPNFKGMPICLVNEYGT----SKNLAK--R-VKKFVE-KDAKNWSGP-GSYPS----TK 393 (587)
Q Consensus 327 ~g~l~~A~~l~~~M~~~Gl~pd~~tynipiaLI~~y~k----~G~l~e--r-Fd~M~~-pd~vtYNsL-~gy~r----~G 393 (587)
.++.+.|...+.+..+.|- ...+. .|=..|.. .++.++ . |.+..+ .+...+..| ..|.+ .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~~---~~a~~---~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGY---TPAEY---VLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTC---HHHHH---HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHH---HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCC
Confidence 5778889998888887653 23333 45555555 778877 5 665443 466677778 88877 78
Q ss_pred ChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCC-C
Q 007864 394 SFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIK-R 472 (587)
Q Consensus 394 ~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~-~ 472 (587)
++++|++.|++-.+. |. |+....|..+-. .-..+..|.... + +.|+... .
T Consensus 130 ~~~~A~~~~~~a~~~---~~---------------~~a~~~Lg~~y~------~g~g~~~d~~~A--~---~~~~~a~~~ 180 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQ---GR---------------DSGQQSMGDAYF------EGDGVTRDYVMA--R---EWYSKAAEQ 180 (490)
T ss_dssp CHHHHHHHHHHHHHT---TC---------------HHHHHHHHHHHH------HTSSSCCCHHHH--H---HHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC---CC---------------HHHHHHHHHHHH------cCCCCCCCHHHH--H---HHHHHHHHC
Confidence 999999999988776 54 111111111100 000001111000 0 2222211 2
Q ss_pred CChhhhHHHHHhHHhhcCcCHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhc----CCCHHHH
Q 007864 473 PDLVAWSSLLSVHEEWASRRVVLVISGFSL----NGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLA----GDDLRKG 543 (587)
Q Consensus 473 pdvvTyNsLI~gy~km~~~dvvsLI~gy~k----~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~----~G~l~~A 543 (587)
.|..++..| -..|.+ .++.++|++.|++-.+.| +...+ .+-..+.. .++.++|
T Consensus 181 ~~~~a~~~L---------------g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 181 GNVWSCNQL---------------GYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp TCHHHHHHH---------------HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CCHHHHHHH---------------HHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 356677777 666777 899999999999988765 45566 66666665 8999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH
Q 007864 544 GELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 544 ~~l~~~M~k~G~~pd~~vynaLI 566 (587)
.+++....+.|. ...+..|.
T Consensus 243 ~~~~~~a~~~~~---~~a~~~lg 262 (490)
T 2xm6_A 243 RVLFSQSAEQGN---SIAQFRLG 262 (490)
T ss_dssp HHHHHHHHTTTC---HHHHHHHH
T ss_pred HHHHHHHHHCCC---HHHHHHHH
Confidence 999999988763 34444443
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=74.96 E-value=11 Score=32.74 Aligned_cols=67 Identities=15% Similarity=0.061 Sum_probs=53.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEA-NEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~P-D~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
-..|.+.|++++|++.|++..+. .| +...| .+-.++.+.|++++|...++..++..-. +...+..+.
T Consensus 18 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 18 GNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 77899999999999999998774 35 45566 8888899999999999999999886422 344554443
No 171
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=74.57 E-value=6.3 Score=43.94 Aligned_cols=141 Identities=12% Similarity=-0.026 Sum_probs=97.9
Q ss_pred hcCCcHHH--H-Hhccc-----------CCCCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCC
Q 007864 363 GTSKNLAK--R-VKKFV-----------EKDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYK 427 (587)
Q Consensus 363 ~k~G~l~e--r-Fd~M~-----------~pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~ 427 (587)
...|+.++ . |++.. ..+...|..+ ..|.+.|++++|++.|++..+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------------------- 462 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER------------------- 462 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-------------------
Confidence 67788887 4 66544 3456778888 9999999999999999999887
Q ss_pred CCCHHH-H-HHHHHH--HHHHHHHHHhhCccHHHHHHHHHHHHHhcCC--CC-ChhhhHHHHHhHHhhcCcCHHHHHHHH
Q 007864 428 PPDDKF-I-ARLWAA--RRDVINGVVSIGEYVCVAEILVMLLFLDGIK--RP-DLVAWSSLLSVHEEWASRRVVLVISGF 500 (587)
Q Consensus 428 ~Pd~~T-y-L~aca~--~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~--~p-dvvTyNsLI~gy~km~~~dvvsLI~gy 500 (587)
.|+... | ..+.+. ..+.. ... +.|++.. .| +...|+.+ =..|
T Consensus 463 ~p~~~~a~~~lg~~~~~~g~~~-~A~---------------~~~~~al~l~P~~~~~~~~l---------------g~~~ 511 (681)
T 2pzi_A 463 VGWRWRLVWYRAVAELLTGDYD-SAT---------------KHFTEVLDTFPGELAPKLAL---------------AATA 511 (681)
T ss_dssp HCCCHHHHHHHHHHHHHHTCHH-HHH---------------HHHHHHHHHSTTCSHHHHHH---------------HHHH
T ss_pred CcchHHHHHHHHHHHHHcCCHH-HHH---------------HHHHHHHHhCCCChHHHHHH---------------HHHH
Confidence 565543 3 222211 10000 000 2222221 23 56778888 8889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 007864 501 SLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHT 558 (587)
Q Consensus 501 ~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd 558 (587)
.+.|++++ ++.|++..+. .|+ ...| .+-.++.+.|++++|.+.++..++. .|+
T Consensus 512 ~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~ 566 (681)
T 2pzi_A 512 ELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRH 566 (681)
T ss_dssp HHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STT
T ss_pred HHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--Ccc
Confidence 99999999 9999988764 454 4566 8888999999999999999988664 454
No 172
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=73.44 E-value=15 Score=30.16 Aligned_cols=67 Identities=6% Similarity=-0.056 Sum_probs=51.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEA-NEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~P-D~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
=..+.+.|++++|++.|++-.+. .| +...| .+-.++.+.|++++|...+...++..-. +...+..+.
T Consensus 11 g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (126)
T 3upv_A 11 GKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKA 79 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 56788999999999999998765 34 45666 8888899999999999999999886422 334444443
No 173
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=73.17 E-value=1.6 Score=39.78 Aligned_cols=56 Identities=27% Similarity=0.423 Sum_probs=39.6
Q ss_pred eeeEEecCCceeeeee------eeccchhhhhhccCchHHHHHHHHHHhcCCCCceEEeccccCC
Q 007864 266 TIVALDVGKKYTGVAV------WHQGMEDIEAESTFFMEDMEEQMLNIKEKFEPVGFVVGFPVGS 324 (587)
Q Consensus 266 r~lAvD~G~kriGvAv------ia~aL~~~~r~s~k~~eal~~~~~m~~~G~~Pd~~Ty~sLL~a 324 (587)
+++|+|+|.+++|+|+ ++++++++.+.+ .+.....+..+.....|+.++....++.
T Consensus 4 ~iLglD~G~kriGvAvsd~~~~~A~pl~ti~~~~---~~~~~~~l~~li~e~~v~~iVvGlP~~m 65 (138)
T 1nu0_A 4 TLMAFDFGTKSIGVAVGQRITGTARPLPAIKAQD---GTPDWNIIERLLKEWQPDEIIVGLPLNM 65 (138)
T ss_dssp EEEEEECCSSEEEEEEEETTTTEEEEEEEEEEET---TEECHHHHHHHHHHHCCSEEEEEEEECT
T ss_pred eEEEEEeCCCEEEEEEEcCCCCEEeeEEEEEcCC---cchHHHHHHHHHHHcCCCEEEEecccCC
Confidence 5799999999999998 788899986421 1122333333333467899998888776
No 174
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=72.69 E-value=19 Score=27.12 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=21.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANE 525 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~ 525 (587)
-..|.+.|++++|++.|++..+. .|+.
T Consensus 50 ~~~~~~~~~~~~A~~~~~~a~~~--~p~~ 76 (91)
T 1na3_A 50 GNAYYKQGDYDEAIEYYQKALEL--DPNN 76 (91)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc--CCCC
Confidence 77788999999999999988764 3543
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=71.31 E-value=6.8 Score=41.34 Aligned_cols=118 Identities=8% Similarity=-0.002 Sum_probs=79.9
Q ss_pred HHHHhhhcCCcHHH--H-Hhccc--CCC----------------CCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCC
Q 007864 357 CLVNEYGTSKNLAK--R-VKKFV--EKD----------------AKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVD 414 (587)
Q Consensus 357 aLI~~y~k~G~l~e--r-Fd~M~--~pd----------------~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~ 414 (587)
.+=..|.+.|++++ . |++.. .|+ ...|+.+ .+|.+.|++++|++.|++..+.
T Consensus 273 ~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~------ 346 (457)
T 1kt0_A 273 EKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL------ 346 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------
Confidence 55667788899888 4 66543 233 4788899 9999999999999999998876
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHH
Q 007864 415 SSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVV 494 (587)
Q Consensus 415 ~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvv 494 (587)
.|+ +...|..+
T Consensus 347 -------------~p~-------------------------------------------~~~a~~~~------------- 357 (457)
T 1kt0_A 347 -------------DSA-------------------------------------------NEKGLYRR------------- 357 (457)
T ss_dssp -------------STT-------------------------------------------CHHHHHHH-------------
T ss_pred -------------CCc-------------------------------------------cHHHHHHH-------------
Confidence 333 22345555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HH-HHHHHHhcCCCHHHHH-HHHHHHHHc
Q 007864 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEF-TI-DLCSACLAGDDLRKGG-ELHHKTLRT 553 (587)
Q Consensus 495 sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~-Ty-sLL~ac~~~G~l~~A~-~l~~~M~k~ 553 (587)
=.+|.+.|++++|+..|++..+ +.|+.. .+ .+-..+.+.++.+++. .++..|...
T Consensus 358 --g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 358 --GEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred --HHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6678888999999999988765 455443 44 6666666777777654 455555443
No 176
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=70.91 E-value=15 Score=31.83 Aligned_cols=59 Identities=20% Similarity=0.066 Sum_probs=50.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTE 559 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~ 559 (587)
-..|.+.|++++|+..+++.... .|+ ...| .+-.++...|++++|...+...++. .|+.
T Consensus 70 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 70 SQCYLNIGDLHEAEETSSEVLKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHHhcCcHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 88899999999999999998775 454 5567 8889999999999999999999886 4553
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=70.77 E-value=18 Score=29.35 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=46.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHH----HH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEF----TI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~----Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
-..+.+.|++++|.+.|++..... |+.. .+ .+-.++.+.|++++|...+...++..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~ 69 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY 69 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456789999999999999988753 4433 66 78888899999999999999998864
No 178
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=69.91 E-value=18 Score=37.80 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHH-H--hcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 504 GWYAEALGLFQTMRVDYIEANEFTIDLCSA-C--LAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 504 G~~~eAl~Lf~eM~~~Gi~PD~~TysLL~a-c--~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
++.++|+++|++-. .|. |+... .|-.. + ...++.++|.+.+....+.| +...+..|.
T Consensus 231 ~d~~~A~~~~~~aa-~g~-~~a~~-~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg 290 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PGY-PASWV-SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLG 290 (452)
T ss_dssp CCHHHHHHHHHHHG-GGS-THHHH-HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CCHHHHHHHHHHHc-CCC-HHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 57888888888866 332 22222 22222 2 45788999999999988887 445555554
No 179
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=69.47 E-value=4.5 Score=43.86 Aligned_cols=103 Identities=9% Similarity=-0.054 Sum_probs=71.4
Q ss_pred Ccchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHHH
Q 007864 381 KNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAE 459 (587)
Q Consensus 381 vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vyn 459 (587)
.++|.| ..|...|++++|+.++++..+-...-. -||
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l--------------G~~----------------------------- 388 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLY--------------HHN----------------------------- 388 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS--------------CTT-----------------------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHc--------------CCC-----------------------------
Confidence 589999 999999999999999987764300000 011
Q ss_pred HHHHHHHHhcCCCCC-hhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHh---c--C-CCCCHHHH--HH
Q 007864 460 ILVMLLFLDGIKRPD-LVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRV---D--Y-IEANEFTI--DL 530 (587)
Q Consensus 460 aLI~~~vFd~M~~pd-vvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~---~--G-i~PD~~Ty--sL 530 (587)
.|+ ..++|.| =..|...|++++|+.+|++-.+ . | -.|++... .+
T Consensus 389 ------------Hp~~a~~l~nL---------------a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l 441 (490)
T 3n71_A 389 ------------NAQLGMAVMRA---------------GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMR 441 (490)
T ss_dssp ------------CHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred ------------CHHHHHHHHHH---------------HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 122 2357777 7889999999999999987543 2 3 23455544 44
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc
Q 007864 531 CSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 531 L~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
-.++...+..++|..++.++.+.
T Consensus 442 ~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 442 MQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555778899999999988763
No 180
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=68.33 E-value=11 Score=30.70 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=24.4
Q ss_pred CCCCcchhh-hhcccCCChhHHHHHHHHHhhc
Q 007864 378 KDAKNWSGP-GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 378 pd~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
.+...|..+ ..|.+.|++++|++.|++..+.
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 48 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDF 48 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 355677788 8888888888888888877765
No 181
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=67.92 E-value=2.6 Score=38.73 Aligned_cols=76 Identities=21% Similarity=0.218 Sum_probs=49.3
Q ss_pred ceeeEEecCCceeeeee------eeccchhhhhhccCchHHHHHHHHHHhcCCCCceEEeccccCC-C-CCCCCccchhh
Q 007864 265 MTIVALDVGKKYTGVAV------WHQGMEDIEAESTFFMEDMEEQMLNIKEKFEPVGFVVGFPVGS-P-EKDTPKQFSQA 336 (587)
Q Consensus 265 ~r~lAvD~G~kriGvAv------ia~aL~~~~r~s~k~~eal~~~~~m~~~G~~Pd~~Ty~sLL~a-c-~~g~l~~A~~l 336 (587)
|+++|+|+|.+++|+++ ++.+++.+.+.+ ...+.....+..+.....|+.++....++. . .......++.+
T Consensus 3 mriLGiDpG~~riGvAv~d~~g~~a~p~~~I~~~~-~r~~~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f 81 (150)
T 1vhx_A 3 LRILGLDLGTKTLGVALSDEMGWTAQGIETIKINE-AEGDYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTF 81 (150)
T ss_dssp EEEEEEEECSSEEEEEEECTTSSSEEEEEEEECBG-GGTBCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHH
T ss_pred CEEEEEEccCCEEEEEEEECCCCEEeeEEEEEcCC-cchHHHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHH
Confidence 78999999999999999 455667775311 012344556666666789999998888765 2 22233344554
Q ss_pred HHHHH
Q 007864 337 HVKAF 341 (587)
Q Consensus 337 ~~~M~ 341 (587)
-..+.
T Consensus 82 ~~~L~ 86 (150)
T 1vhx_A 82 AKVLE 86 (150)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=67.18 E-value=5.6 Score=40.13 Aligned_cols=93 Identities=11% Similarity=-0.040 Sum_probs=48.3
Q ss_pred cchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHHHHH
Q 007864 382 NWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCVAEI 460 (587)
Q Consensus 382 tYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~vyna 460 (587)
.|+.+ ..|.+.|++++|++.|++..+. .|+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~-------------------~p~------------------------------ 262 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTE-------------------EEK------------------------------ 262 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHH-------------------CTT------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------CCC------------------------------
Confidence 78889 9999999999999999988766 332
Q ss_pred HHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHH--hcC
Q 007864 461 LVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSAC--LAG 537 (587)
Q Consensus 461 LI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac--~~~ 537 (587)
+...|..+ -.+|.+.|++++|++.|++..+ +.|+.... ..+..+ ...
T Consensus 263 -------------~~~a~~~l---------------g~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 263 -------------NPKALFRR---------------GKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEK 312 (338)
T ss_dssp -------------CHHHHHHH---------------HHHHHTTTCHHHHHHHHHHTTC----------------------
T ss_pred -------------CHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHH
Confidence 23345556 7788999999999999998764 45665544 444433 234
Q ss_pred CCHHHHHHHHHHHHHc
Q 007864 538 DDLRKGGELHHKTLRT 553 (587)
Q Consensus 538 G~l~~A~~l~~~M~k~ 553 (587)
+..++++.++..|.+.
T Consensus 313 ~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 313 ALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHhhCC
Confidence 5667777888777643
No 183
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=67.00 E-value=20 Score=31.14 Aligned_cols=66 Identities=9% Similarity=-0.072 Sum_probs=52.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANE-FTI-DLCSACLAGDDLRKGGELHHKTLRTGLHH-TEMKAVALG 566 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~-~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~p-d~~vynaLI 566 (587)
=..|.+.|++++|++.|++..+. .|+. ..| .+-..+.+.|++++|...+...++.. | +..++..|.
T Consensus 38 a~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la 106 (150)
T 4ga2_A 38 AKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKAVECYRRSVELN--PTQKDLVLKIA 106 (150)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 67799999999999999998774 5654 566 88888999999999999999998863 4 344555554
No 184
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=65.78 E-value=26 Score=34.90 Aligned_cols=180 Identities=9% Similarity=-0.014 Sum_probs=106.4
Q ss_pred CCCCCccchhhHHHHHHcCCC-CC-----CCCCCchhHHHHhhhcCCcHHH--H-HhcccC-----CC----CCcchhh-
Q 007864 326 EKDTPKQFSQAHVKAFLSKLD-SL-----PNFKGMPICLVNEYGTSKNLAK--R-VKKFVE-----KD----AKNWSGP- 386 (587)
Q Consensus 326 ~~g~l~~A~~l~~~M~~~Gl~-pd-----~~tynipiaLI~~y~k~G~l~e--r-Fd~M~~-----pd----~vtYNsL- 386 (587)
..|+.+.|...+.+.++.--. ++ ..+++ .|=..|...|+.++ . |++..+ ++ ..+|+.+
T Consensus 153 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~---~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 229 (378)
T 3q15_A 153 HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF---VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIA 229 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH---HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 478888888888877653211 11 22344 56677888999988 4 554321 12 3578889
Q ss_pred hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-------HHHHHHHHhhCccHHHHH
Q 007864 387 GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAAR-------RDVINGVVSIGEYVCVAE 459 (587)
Q Consensus 387 ~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~-------~~lh~~m~k~~pd~~vyn 459 (587)
..|.+.|++++|++.|++-.+.....- .|+....+...+.. ........+
T Consensus 230 ~~y~~~~~~~~A~~~~~~al~~~~~~~--------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--------- 286 (378)
T 3q15_A 230 NSYDRSGDDQMAVEHFQKAAKVSREKV--------------PDLLPKVLFGLSWTLCKAGQTQKAFQFIEE--------- 286 (378)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHC--------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHH---------
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhC--------------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHH---------
Confidence 999999999999999998876100001 34431111111111 111111110
Q ss_pred HHHHHHHHhcCCCCC-hhhhHHHHHhHHhhcCcCHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCHHH-H-HHHHH
Q 007864 460 ILVMLLFLDGIKRPD-LVAWSSLLSVHEEWASRRVVLVISGFSLNGW---YAEALGLFQTMRVDYIEANEFT-I-DLCSA 533 (587)
Q Consensus 460 aLI~~~vFd~M~~pd-vvTyNsLI~gy~km~~~dvvsLI~gy~k~G~---~~eAl~Lf~eM~~~Gi~PD~~T-y-sLL~a 533 (587)
.+ ++..+...+. ...++.+ -..|...|+ +.+|+..+++ .+..|+... + .+-..
T Consensus 287 -al--~~~~~~~~~~~~~~~~~l---------------~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 287 -GL--DHITARSHKFYKELFLFL---------------QAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAV 345 (378)
T ss_dssp -HH--HHCCTTCCSCHHHHHHHH---------------HHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred -HH--HHHHHcCCHHHHHHHHHH---------------HHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHH
Confidence 00 3333333332 2234444 555667777 8888888876 334444443 4 78888
Q ss_pred HhcCCCHHHHHHHHHHHHH
Q 007864 534 CLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 534 c~~~G~l~~A~~l~~~M~k 552 (587)
+...|+.++|.+.+....+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999887764
No 185
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=64.22 E-value=15 Score=39.15 Aligned_cols=56 Identities=13% Similarity=-0.019 Sum_probs=46.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc-----C-CCCCHH-HH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVD-----Y-IEANEF-TI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~-----G-i~PD~~-Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
-..|...|++++|+.++++...- | -.||.. +| .|-..|...|++++|..++.+..+
T Consensus 347 a~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 347 MGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999987642 2 346654 45 888889999999999999987764
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=63.72 E-value=15 Score=30.27 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=28.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-CCH----HHH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIE-ANE----FTI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~-PD~----~Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
-..|...|++++|++.|++.....-. +|. .++ .+-..+...|++++|...+....+
T Consensus 16 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 77 (164)
T 3ro3_A 16 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLL 77 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555666666666666554432110 111 234 555555566666666666655543
No 187
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=61.86 E-value=53 Score=28.73 Aligned_cols=58 Identities=10% Similarity=-0.037 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 007864 507 AEALGLFQTMRVDYIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHH-TEMKAVALG 566 (587)
Q Consensus 507 ~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~p-d~~vynaLI 566 (587)
.+|++.|++..+. .|+ ...+ .+-..+...|++++|...+..+++..-.+ +...+..|+
T Consensus 91 ~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~ 151 (176)
T 2r5s_A 91 SPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFM 151 (176)
T ss_dssp CHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHH
T ss_pred chHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHH
Confidence 4578888887763 565 5566 88888999999999999999998875332 234555554
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=61.69 E-value=12 Score=38.38 Aligned_cols=87 Identities=9% Similarity=-0.030 Sum_probs=62.3
Q ss_pred CCCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCccHHH
Q 007864 379 DAKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFIARLWAARRDVINGVVSIGEYVCV 457 (587)
Q Consensus 379 d~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~TyL~aca~~~~lh~~m~k~~pd~~v 457 (587)
+...|+.+ ..|.+.|++++|++.+++..+. .|+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-------------------~p~~-------------------------- 306 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI-------------------DPSN-------------------------- 306 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------------------CTTC--------------------------
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-------------------Cchh--------------------------
Confidence 45788888 9999999999999999888765 3332
Q ss_pred HHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH-H-HHHHHHh
Q 007864 458 AEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFT-I-DLCSACL 535 (587)
Q Consensus 458 ynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~T-y-sLL~ac~ 535 (587)
...|..+ -.+|.+.|++++|++.|++..+. .|+... + .+-..+.
T Consensus 307 -----------------~~a~~~l---------------g~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 307 -----------------TKALYRR---------------AQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQ 352 (370)
T ss_dssp -----------------HHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred -----------------HHHHHHH---------------HHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 2345555 66788999999999999987764 465444 4 5555555
Q ss_pred cCCCHHHHH
Q 007864 536 AGDDLRKGG 544 (587)
Q Consensus 536 ~~G~l~~A~ 544 (587)
..++.+++.
T Consensus 353 ~~~~~~~a~ 361 (370)
T 1ihg_A 353 KIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555543
No 189
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=61.13 E-value=29 Score=28.91 Aligned_cols=67 Identities=13% Similarity=-0.104 Sum_probs=51.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
-..+.+.|++++|+..|++..+. .|+ ...| .+-.++...|+.++|...++..++..-. +...+..|.
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la 92 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALA 92 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 56788999999999999998874 564 4555 7777888999999999999999886422 333444443
No 190
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=58.68 E-value=40 Score=30.93 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=47.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCC-CCC-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYI-EAN-EFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi-~PD-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
-..+.+.|++++|.+.|+++....- .|. ...+ .+-.++.+.|++++|...++.+++..
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 71 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 71 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 5678899999999999999987532 121 2456 88889999999999999999998754
No 191
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=57.22 E-value=50 Score=37.25 Aligned_cols=171 Identities=6% Similarity=-0.020 Sum_probs=96.4
Q ss_pred CCCccch-hhHHHHHHcCCCCCCCCCCchhHHHHhhhcCCcHHH--H-HhcccC-------------CC-----------
Q 007864 328 DTPKQFS-QAHVKAFLSKLDSLPNFKGMPICLVNEYGTSKNLAK--R-VKKFVE-------------KD----------- 379 (587)
Q Consensus 328 g~l~~A~-~l~~~M~~~Gl~pd~~tynipiaLI~~y~k~G~l~e--r-Fd~M~~-------------pd----------- 379 (587)
|+.+.|. ++++..... ++.+...|- .++..+-+.|++++ . |+.... |+
T Consensus 357 ~~~~~a~r~il~rAi~~-~P~s~~Lwl---~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~ 432 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQC-IPNSAVLAF---SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK 432 (679)
T ss_dssp SCCTTHHHHHHHHHHHH-CTTCHHHHH---HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHh-CCCCHHHHH---HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence 4456775 888877653 333333333 56777778888877 3 665432 32
Q ss_pred -CCcchhh-hhcccCCChhHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCHHHH-----HHHH-HH----HHHHHHH
Q 007864 380 -AKNWSGP-GSYPSTKSFHTNRLQAKRQLRRFISDVDSSYLPPEGCPNYKPPDDKFI-----ARLW-AA----RRDVING 447 (587)
Q Consensus 380 -~vtYNsL-~gy~r~G~~eeAl~Lf~eM~~~~~~Gv~~~~~~~~g~~~~~~Pd~~Ty-----L~ac-a~----~~~lh~~ 447 (587)
...|-.. ....+.|..+.|..+|.+..+. -- ......| +.-. .+ ++.+++.
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~---~~--------------~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~ 495 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRL---KK--------------LVTPDIYLENAYIEYHISKDTKTACKVLEL 495 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT---GG--------------GSCTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cC--------------CCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 2246666 6666778889999999887654 01 1122333 1111 00 0333333
Q ss_pred HHh-hCccHHHHHHHHHHHHHhcCCCCChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--C
Q 007864 448 VVS-IGEYVCVAEILVMLLFLDGIKRPDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEA--N 524 (587)
Q Consensus 448 m~k-~~pd~~vynaLI~~~vFd~M~~pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~P--D 524 (587)
.++ +.. +..-|+.. +.-....|+.+.|..+|++-....-.+ .
T Consensus 496 ~Lk~~p~--------------------~~~~w~~y---------------~~fe~~~~~~~~AR~lferal~~~~~~~~~ 540 (679)
T 4e6h_A 496 GLKYFAT--------------------DGEYINKY---------------LDFLIYVNEESQVKSLFESSIDKISDSHLL 540 (679)
T ss_dssp HHHHHTT--------------------CHHHHHHH---------------HHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred HHHHCCC--------------------chHHHHHH---------------HHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 333 222 33345555 666666777888888887766543211 1
Q ss_pred HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 525 EFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 525 ~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
...| ..+.-=.+.|+.+.+..+.+.+.+.-
T Consensus 541 ~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 541 KMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2344 55665666788888888877777653
No 192
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=54.44 E-value=45 Score=34.01 Aligned_cols=57 Identities=5% Similarity=-0.029 Sum_probs=46.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEA-NEFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~P-D~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
-..|...|++++|++++.+-...|-.+ +...+ .++..+.+.|+.+.|.++++.|.+.
T Consensus 107 a~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 107 ATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 788999999999999999865544323 34455 8888999999999999999999775
No 193
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=53.74 E-value=46 Score=34.47 Aligned_cols=66 Identities=9% Similarity=0.015 Sum_probs=55.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLR-----TGLHHTEMKAV 563 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k-----~G~~pd~~vyn 563 (587)
+..+...|++++|+..++...... .-++..| .+|.++.+.|+..+|.+.|+...+ .|++|+..+-.
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 888999999999999998886542 2377788 999999999999999999887754 59999887643
No 194
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=51.98 E-value=8.2 Score=41.15 Aligned_cols=27 Identities=4% Similarity=0.027 Sum_probs=24.5
Q ss_pred Ccchhh-hhcccCCChhHHHHHHHHHhh
Q 007864 381 KNWSGP-GSYPSTKSFHTNRLQAKRQLR 407 (587)
Q Consensus 381 vtYNsL-~gy~r~G~~eeAl~Lf~eM~~ 407 (587)
.++|.| ..|...|++++|+.++++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~ 368 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIK 368 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 589999 999999999999999998764
No 195
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=51.62 E-value=1.7e+02 Score=29.17 Aligned_cols=59 Identities=2% Similarity=-0.103 Sum_probs=44.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANE----FTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHT 558 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~----~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd 558 (587)
-..+.+.|++++|+..|++... .||. ..+ .+=.++...|+.++|...+++.......|.
T Consensus 142 a~l~~~~~r~~dA~~~l~~a~~---~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~ 205 (282)
T 4f3v_A 142 AVVYGAAERWTDVIDQVKSAGK---WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEA 205 (282)
T ss_dssp HHHHHHTTCHHHHHHHHTTGGG---CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTT
T ss_pred HHHHHHcCCHHHHHHHHHHhhc---cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcc
Confidence 4578899999999999984433 3322 245 777788999999999999999986444354
No 196
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=50.01 E-value=43 Score=34.94 Aligned_cols=59 Identities=12% Similarity=-0.000 Sum_probs=41.7
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007864 501 SLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGD-----DLRKGGELHHKTLRTGLHHTEMKAVALGL 567 (587)
Q Consensus 501 ~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G-----~l~~A~~l~~~M~k~G~~pd~~vynaLIa 567 (587)
...|+.++|+++|++-.+.| +...+ .|=..|. .| +.++|.+.+.... .| +...+..|..
T Consensus 262 ~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~ 326 (452)
T 3e4b_A 262 PELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQ 326 (452)
T ss_dssp GGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHH
Confidence 45899999999999988877 44444 4444444 44 9999999999887 33 4555555553
No 197
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=48.77 E-value=74 Score=30.61 Aligned_cols=56 Identities=7% Similarity=-0.116 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANE-FTI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 495 sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~-~Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
.+-..|.+.|++++|++.|++..+ +.|+. ..+ .+-.++...|++++|...+....+
T Consensus 43 ~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 43 NRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445566677777777777776554 24443 344 666667777777777777766654
No 198
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=48.17 E-value=93 Score=25.21 Aligned_cols=57 Identities=16% Similarity=-0.060 Sum_probs=46.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc------CCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVD------YIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~------Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
=..+.+.|+++.|...|++-... +-.+....+ .+-.++.+.|+++.|...++...+.
T Consensus 12 G~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 56678899999999999886543 112345667 8899999999999999999999875
No 199
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=46.10 E-value=80 Score=33.16 Aligned_cols=71 Identities=7% Similarity=-0.135 Sum_probs=56.7
Q ss_pred CChhhhHHHHHhHHhhcCcCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHH
Q 007864 473 PDLVAWSSLLSVHEEWASRRVVLVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTL 551 (587)
Q Consensus 473 pdvvTyNsLI~gy~km~~~dvvsLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~ 551 (587)
.+..+|.++ --.+...|++++|...+++..... |+...| .+=..+.-.|+.++|.+.+....
T Consensus 275 ~~a~~~~al---------------al~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 275 NLSIIYQIK---------------AVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp TCHHHHHHH---------------HHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHH---------------HHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 466677766 555566799999999999999876 888888 77777888999999999999888
Q ss_pred HcCCCCCHHHH
Q 007864 552 RTGLHHTEMKA 562 (587)
Q Consensus 552 k~G~~pd~~vy 562 (587)
+. .|...+|
T Consensus 338 rL--~P~~~t~ 346 (372)
T 3ly7_A 338 NL--RPGANTL 346 (372)
T ss_dssp HH--SCSHHHH
T ss_pred hc--CCCcChH
Confidence 76 4655554
No 200
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=41.76 E-value=31 Score=29.64 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=45.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc--------C--------CCCCH-HHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVD--------Y--------IEANE-FTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~--------G--------i~PD~-~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
=..|.+.|++++|++.|++-... . ..|+. ..| .+-.++.+.|++++|...+...++..
T Consensus 18 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 18 GNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 56788999999999999987654 0 02333 455 78888889999999999999998864
No 201
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=38.67 E-value=46 Score=29.07 Aligned_cols=52 Identities=17% Similarity=0.034 Sum_probs=40.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
++.+.+.|++++|+.+.+.+- .||...| .|..+ +.|..+++..-+..+..+|
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC
T ss_pred HHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC
Confidence 567889999999999887764 8999999 77654 6677777777666666555
No 202
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=38.20 E-value=45 Score=29.09 Aligned_cols=52 Identities=17% Similarity=-0.027 Sum_probs=41.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
++.+.+.|++++|+.+.+.+ +.||...| .|..+ +.|..+++..-+..+..+|
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGN----PWPALEPWFALCEW--HLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTCS
T ss_pred HHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC
Confidence 56788999999999887765 48999999 77654 7888888888777777666
No 203
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=36.24 E-value=1.2e+02 Score=27.60 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=8.8
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 007864 537 GDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 537 ~G~l~~A~~l~~~M~k~G 554 (587)
.++.++|.+++....+.|
T Consensus 102 ~~d~~~A~~~~~~A~~~~ 119 (212)
T 3rjv_A 102 ATDVAHAITLLQDAARDS 119 (212)
T ss_dssp SCCHHHHHHHHHHHTSST
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 445555555555544443
No 204
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=34.46 E-value=57 Score=29.92 Aligned_cols=66 Identities=11% Similarity=-0.024 Sum_probs=50.2
Q ss_pred HHHHHhcC---CHHHHHHHHHHHHhcCCCC-C-HHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007864 497 ISGFSLNG---WYAEALGLFQTMRVDYIEA-N-EFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVAL 565 (587)
Q Consensus 497 I~gy~k~G---~~~eAl~Lf~eM~~~Gi~P-D-~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaL 565 (587)
=.++++.+ +++++..+|++..+.. .| + .-.+ .|--+|.+.|++++|++.++.+++. +|+-.-.-.|
T Consensus 39 a~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--eP~n~QA~~L 110 (152)
T 1pc2_A 39 AWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQNNQAKEL 110 (152)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHH
Confidence 55778888 6779999999988875 35 2 3333 7778889999999999999999885 6755444444
No 205
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=34.29 E-value=82 Score=28.94 Aligned_cols=55 Identities=18% Similarity=0.101 Sum_probs=45.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC--------H-----HHH-HHHHHHhcCCCHHHHHHHHHHHHHc
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVDYIEAN--------E-----FTI-DLCSACLAGDDLRKGGELHHKTLRT 553 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~Gi~PD--------~-----~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~ 553 (587)
=..+.+.|++++|++.|++-.+ +.|+ . ..| .+-.++.+.|++++|...++..++.
T Consensus 18 G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 18 AQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4557889999999999998765 3444 2 278 8888899999999999999999884
No 206
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=33.87 E-value=1.3e+02 Score=27.55 Aligned_cols=68 Identities=10% Similarity=-0.076 Sum_probs=49.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc-----CCCCCHHH------HHHHHHHhcCCCHHHHHHHHHHHHH-----cCCCCCHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVD-----YIEANEFT------IDLCSACLAGDDLRKGGELHHKTLR-----TGLHHTEM 560 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~-----Gi~PD~~T------ysLL~ac~~~G~l~~A~~l~~~M~k-----~G~~pd~~ 560 (587)
=.++.+.|++++|+..|++-.+. -+.||... |..=.++...|++++|..-++..++ .|+.+...
T Consensus 64 g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 64 AEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 88899999999999999987763 23787531 1334577889999999999998865 35555544
Q ss_pred HHHH
Q 007864 561 KAVA 564 (587)
Q Consensus 561 vyna 564 (587)
...-
T Consensus 144 ~~~~ 147 (159)
T 2hr2_A 144 RMME 147 (159)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 207
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=31.41 E-value=1.7e+02 Score=29.69 Aligned_cols=71 Identities=10% Similarity=0.116 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCC--HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDD--LRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 495 sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~--l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
.+|.-|...|+.+||.+.++++..-.+.+ .+.. .+..+.-+.++ .+...+++..+.+.|+-+.......+-
T Consensus 171 ~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~ 244 (307)
T 2zu6_B 171 MLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYE 244 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 89999999999999999999997544443 3455 77777776544 456778899999888877666665553
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=31.27 E-value=27 Score=27.11 Aligned_cols=52 Identities=8% Similarity=0.154 Sum_probs=41.0
Q ss_pred HHHHhhhcCCcHHH--H-Hhccc--CC-CCC-cchhh-hhcccCCChhHHHHHHHHHhhc
Q 007864 357 CLVNEYGTSKNLAK--R-VKKFV--EK-DAK-NWSGP-GSYPSTKSFHTNRLQAKRQLRR 408 (587)
Q Consensus 357 aLI~~y~k~G~l~e--r-Fd~M~--~p-d~v-tYNsL-~gy~r~G~~eeAl~Lf~eM~~~ 408 (587)
..-..|.+.|++++ . |++.. .| +.. .|..+ ..|.+.|++++|++.|++..+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34556778888888 5 76653 23 556 88889 9999999999999999999877
No 209
>1q2j_A MU-conotoxin SMIIIA; HET: PCA; NMR {Synthetic} SCOP: j.30.1.1 PDB: 2yen_A*
Probab=31.07 E-value=11 Score=24.42 Aligned_cols=10 Identities=50% Similarity=1.282 Sum_probs=7.8
Q ss_pred ccccccchhh
Q 007864 11 NCRNHARSCF 20 (587)
Q Consensus 11 ~~~~~~~~~~ 20 (587)
-||+|||-|-
T Consensus 14 WCrdharCc~ 23 (26)
T 1q2j_A 14 WCRDHSRCCX 23 (26)
T ss_dssp SSSSSSSCC-
T ss_pred hhcccceecc
Confidence 4999999874
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=30.92 E-value=2.4e+02 Score=23.79 Aligned_cols=56 Identities=11% Similarity=-0.094 Sum_probs=44.4
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhc----CCCHHHHHHHHHHHHHcCC
Q 007864 497 ISGFSL----NGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLA----GDDLRKGGELHHKTLRTGL 555 (587)
Q Consensus 497 I~gy~k----~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~----~G~l~~A~~l~~~M~k~G~ 555 (587)
=..|.+ .++.++|+++|++-.+.| +...+ .|=..|.. .++.++|.+.+....+.|.
T Consensus 64 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 64 GDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 455666 789999999999988776 45555 66666666 7899999999999999874
No 211
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.80 E-value=1.3e+02 Score=26.43 Aligned_cols=71 Identities=10% Similarity=0.127 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCC--HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDD--LRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 495 sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~--l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
.+|.-|...|+.+||.+-++++..-.+. ..+.. .+..+.-+.++ .+....++..+.+.|+-+......++-
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~ 85 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 85 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHH
Confidence 5599999999999999999999754333 34556 77778887653 466788899999899877666655553
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=28.87 E-value=2e+02 Score=23.22 Aligned_cols=47 Identities=9% Similarity=-0.017 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHH--HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 007864 506 YAEALGLFQTMRVDYIEANEFTI--DLCSACLAGDDLRKGGELHHKTLRTG 554 (587)
Q Consensus 506 ~~eAl~Lf~eM~~~Gi~PD~~Ty--sLL~ac~~~G~l~~A~~l~~~M~k~G 554 (587)
.++|..+|++-.. ..|+...- .+=..+.+.|++++|...|..+.+..
T Consensus 25 ~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 25 TDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6899999998776 46776555 55567788999999999999998864
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=27.78 E-value=81 Score=33.16 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=44.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc--C-CCCCH----HHH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 497 ISGFSLNGWYAEALGLFQTMRVD--Y-IEANE----FTI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 497 I~gy~k~G~~~eAl~Lf~eM~~~--G-i~PD~----~Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
|..+-+.|++++|++++++..+. . +-|+. .|+ .|..+|...|++++|..++.++++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~ 357 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME 357 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 66778889999999999988753 2 23332 356 788889999999999999998764
No 214
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.78 E-value=1.3e+02 Score=27.35 Aligned_cols=70 Identities=10% Similarity=0.133 Sum_probs=52.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCC--HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007864 495 LVISGFSLNGWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDD--LRKGGELHHKTLRTGLHHTEMKAVAL 565 (587)
Q Consensus 495 sLI~gy~k~G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~--l~~A~~l~~~M~k~G~~pd~~vynaL 565 (587)
.+|.-|...|+.+||.+-++++..-.+. ..+.. .+..++-+.++ -+....++..+.+.|+-+.......+
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf 86 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 86 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHH
Confidence 5599999999999999999999754333 34556 77778777543 45677888889888887766665555
No 215
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.38 E-value=1.3e+02 Score=29.76 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=42.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-CCH---------------HHH-HHHHHHhcCCCHHHHHHHHHHHHH
Q 007864 498 SGFSLNGWYAEALGLFQTMRVDYIE-ANE---------------FTI-DLCSACLAGDDLRKGGELHHKTLR 552 (587)
Q Consensus 498 ~gy~k~G~~~eAl~Lf~eM~~~Gi~-PD~---------------~Ty-sLL~ac~~~G~l~~A~~l~~~M~k 552 (587)
..+.+.|++++|++.|.+..+..-. .|. ..+ .+...|...|++++|.+.+..+.+
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4578899999999999998764222 111 236 788899999999999999887765
No 216
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=21.28 E-value=1.3e+02 Score=28.05 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007864 504 GWYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALGLI 568 (587)
Q Consensus 504 G~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLIal 568 (587)
+++++|.++|+.+....-+- ...| .--.==.+.|++..|+++++..+..|-.|....-++|=.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl 138 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNL 138 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhh
Confidence 78899999999997652222 3333 3333334689999999999999999998888877777655
No 217
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=20.71 E-value=3e+02 Score=23.94 Aligned_cols=61 Identities=10% Similarity=-0.144 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007864 505 WYAEALGLFQTMRVDYIEANEFTI-DLCSACLAGDDLRKGGELHHKTLRTGLHHTEMKAVALG 566 (587)
Q Consensus 505 ~~~eAl~Lf~eM~~~Gi~PD~~Ty-sLL~ac~~~G~l~~A~~l~~~M~k~G~~pd~~vynaLI 566 (587)
+.-+..+-++.+-...+.|+.... ..|.||-+..++..|..+++-++.+ +.....+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 344566667777777889999999 9999999999999999998877543 233345677776
Done!