Query 007865
Match_columns 587
No_of_seqs 299 out of 1103
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 12:25:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007865.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007865hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kks_A Integrase, IN; beta-str 76.5 8.6 0.00029 32.9 8.2 67 139-215 2-68 (152)
2 3hph_A Integrase, IN; protein- 54.5 33 0.0011 31.4 7.8 66 140-215 61-126 (219)
3 1c0m_A Protein (integrase); HI 49.0 52 0.0018 30.7 8.3 70 139-213 10-79 (238)
4 1cxq_A Avian sarcoma virus int 48.7 78 0.0027 27.2 9.0 71 139-214 11-81 (162)
5 3hot_A Transposable element ma 45.7 77 0.0026 31.2 9.4 56 152-210 186-252 (345)
6 3l3u_A POL polyprotein; DNA in 45.1 36 0.0012 29.4 6.1 64 139-212 9-72 (163)
7 3av9_A Integrase, IN; protein- 31.3 97 0.0033 27.3 6.8 66 139-214 29-94 (183)
8 1bco_A MUA domain II, bacterio 30.3 1E+02 0.0034 30.4 7.3 71 139-212 16-94 (327)
9 2x78_A Integrase; viral protei 27.6 1.4E+02 0.0049 26.3 7.4 70 139-214 13-83 (200)
10 2bw3_A Transposase; DNA recomb 27.2 1.2E+02 0.004 32.1 7.6 68 168-239 130-201 (534)
11 1ex4_A Integrase; SH3-like dom 24.8 1.2E+02 0.0042 27.9 6.5 64 140-213 10-73 (239)
12 1c6v_A Protein (SIV integrase) 23.3 1.6E+02 0.0056 24.7 6.6 63 139-211 9-71 (164)
13 1x9b_A Hypothetical membrane p 22.7 78 0.0027 21.8 3.1 45 251-296 7-51 (53)
14 2l0z_A Glycoprotein G2; zinc-b 21.8 27 0.00093 23.1 0.7 16 429-444 20-35 (42)
15 2ayd_A WRKY transcription fact 20.4 62 0.0021 24.8 2.6 18 6-23 56-73 (76)
No 1
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=76.51 E-value=8.6 Score=32.85 Aligned_cols=67 Identities=7% Similarity=0.070 Sum_probs=47.2
Q ss_pred CCeeeeccccccccCCceeeEEEEEcCCCCeeEEeeeecccCccchHHHHHHHHHHHhCCCCCcEEeccccHHHHHH
Q 007865 139 GDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKA 215 (587)
Q Consensus 139 ~dvi~~D~Ty~tn~y~~pl~~~~Gvn~~~~~~~~g~al~~~Et~es~~w~l~~~~~~m~~~~P~~iitD~~~a~~~A 215 (587)
++++.+|.|+..++ +.++.+|..-+.+ ++..+ .+++.+...-+|..+....+ |..|.||+.......
T Consensus 2 n~~w~~D~t~~~~~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~f~s~ 68 (152)
T 3kks_A 2 SHLWQMDNTHWNKT-----IIWVAVETNSGLV-EAQVI-PEETALQVALCILQLIQRYT---VLHLHSDNGPCFTAH 68 (152)
T ss_dssp CCEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSSCHHHHHHHHHHHHHHSC---CSEEEECSCHHHHSH
T ss_pred CcEEEEeeeeeCCE-----EEEEEEEcCCCcE-EEEEe-CCcCHHHHHHHHHHHHHHhC---CcEEecCCchHhhHH
Confidence 46788999988543 4666777776655 55544 47777777766666666654 999999999887543
No 2
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=54.52 E-value=33 Score=31.43 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=44.8
Q ss_pred CeeeeccccccccCCceeeEEEEEcCCCCeeEEeeeecccCccchHHHHHHHHHHHhCCCCCcEEeccccHHHHHH
Q 007865 140 DVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKA 215 (587)
Q Consensus 140 dvi~~D~Ty~tn~y~~pl~~~~Gvn~~~~~~~~g~al~~~Et~es~~w~l~~~~~~m~~~~P~~iitD~~~a~~~A 215 (587)
+++.+|.|+..++ +.++-+|..-+.+ .+.. +.+++.+...-++..+....+ |.+|.||+......+
T Consensus 61 ~~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~~-~~~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~F~s~ 126 (219)
T 3hph_A 61 DHWQVDYTHYEDK-----IILVWVETNSGLI-YAER-VKGETGQEFRVQTMKWYAMFA---PKSLQSDNGPAFVAE 126 (219)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEE-ESCCCHHHHHHHHHHHHHHHC---CCEEEECCCHHHHSH
T ss_pred ceEEEEEecCCCE-----EEEEEEeCCCCcE-EEEE-eCCCCHHHHHHHHHHHHHHhC---CcEEEeCCCchhhhH
Confidence 5667888876544 4667777776655 4444 456666666666666555554 999999999887543
No 3
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=48.98 E-value=52 Score=30.71 Aligned_cols=70 Identities=13% Similarity=0.074 Sum_probs=47.5
Q ss_pred CCeeeeccccccccCCceeeEEEEEcCCCCeeEEeeeecccCccchHHHHHHHHHHHhCCCCCcEEeccccHHHH
Q 007865 139 GDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMS 213 (587)
Q Consensus 139 ~dvi~~D~Ty~tn~y~~pl~~~~Gvn~~~~~~~~g~al~~~Et~es~~w~l~~~~~~m~~~~P~~iitD~~~a~~ 213 (587)
++++.+|.||.....+ -.+.++-+|..-+. ++|+.+- .++.+...-+|+......+ .|.+|.||+.....
T Consensus 10 ~~~w~~D~~~~~~~~g-~~yl~~~iD~~Sr~-i~~~~~~-~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~ 79 (238)
T 1c0m_A 10 LQIWQTDFTLEPRMAP-RSWLAVTVDTASSA-IVVTQHG-RVTSVAVQHHWATAIAVLG--RPKAIKTDNGSCFT 79 (238)
T ss_dssp TSEEEEEEEECGGGCS-SCEEEEEEETTTCC-EEEEEES-SCCHHHHHHHHHHHHHHHC--CCSEEEECSCHHHH
T ss_pred CCEEEEeeccccccCC-CEEEEEEEECCCCC-EEEEEcc-CCCHHHHHHHHHHHHHHhC--CCcEEEECCCCccc
Confidence 3678899998654333 24556667766554 4466654 7777777777766666655 48999999998764
No 4
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=48.66 E-value=78 Score=27.16 Aligned_cols=71 Identities=13% Similarity=0.067 Sum_probs=46.3
Q ss_pred CCeeeeccccccccCCceeeEEEEEcCCCCeeEEeeeecccCccchHHHHHHHHHHHhCCCCCcEEeccccHHHHH
Q 007865 139 GDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSK 214 (587)
Q Consensus 139 ~dvi~~D~Ty~tn~y~~pl~~~~Gvn~~~~~~~~g~al~~~Et~es~~w~l~~~~~~m~~~~P~~iitD~~~a~~~ 214 (587)
.+++.+|.||....-+ -.+.++.+|..-+.+ +|+.+- +.+.+...-+|+......+ .|..|.||+......
T Consensus 11 ~~~~~~D~~~~~~~~g-~~yl~~~iD~~Sr~i-~~~~~~-~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~s 81 (162)
T 1cxq_A 11 LQIWQTDFTLEPRMAP-RSWLAVTVDTASSAI-VVTQHG-RVTSVAAQHHWATAIAVLG--RPKAIKTDNGSCFTS 81 (162)
T ss_dssp CCEEEEEEEECGGGTT-SCEEEEEEETTTCCE-EEEEES-SCCHHHHHHHHHHHHHHHC--CCSEEECCSCHHHHS
T ss_pred CCEEEeeeeecccCCC-CEEEEEEEEcCCCeE-EEEECC-CccHHHHHHHHHHHHHHHC--CCeEEEeCCchhhhh
Confidence 3678888887654322 345567778766544 455554 6676666566665555544 588999999987754
No 5
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=45.70 E-value=77 Score=31.18 Aligned_cols=56 Identities=5% Similarity=0.028 Sum_probs=34.4
Q ss_pred cCCceeeEEEEEcCCCCeeEEeeeecc---cCccchHHHHHHHHHHHh----CC----CCCcEEeccccH
Q 007865 152 KYNLICAPFVGVNHHWKNMLFGCAFLL---DESTHSYVWLFESFLESM----GN----TQPKTIFTNENE 210 (587)
Q Consensus 152 ~y~~pl~~~~Gvn~~~~~~~~g~al~~---~Et~es~~w~l~~~~~~m----~~----~~P~~iitD~~~ 210 (587)
.+...+....+++..| ++++.++. .-+.+.|.-+|+.++..+ +. ..+..++.|...
T Consensus 186 ~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~ 252 (345)
T 3hot_A 186 RFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAP 252 (345)
T ss_dssp TTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCT
T ss_pred CcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCC
Confidence 3444555666666666 45666665 456777777777765543 21 235688999854
No 6
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=45.09 E-value=36 Score=29.38 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=43.9
Q ss_pred CCeeeeccccccccCCceeeEEEEEcCCCCeeEEeeeecccCccchHHHHHHHHHHHhCCCCCcEEeccccHHH
Q 007865 139 GDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAM 212 (587)
Q Consensus 139 ~dvi~~D~Ty~tn~y~~pl~~~~Gvn~~~~~~~~g~al~~~Et~es~~w~l~~~~~~m~~~~P~~iitD~~~a~ 212 (587)
.+++.+|.||..++ +.++-+|...+.+ ++..+ .+++.+...-++..+...++ |.+|.||+....
T Consensus 9 ~~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~~---~~~i~sD~G~~f 72 (163)
T 3l3u_A 9 PGIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP---VKTVHTDNGSNF 72 (163)
T ss_dssp TTEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHSC---CCEEEECCCGGG
T ss_pred CCEEEEEecccCCc-----EEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHcC---CcEEeecChHhh
Confidence 46788999998653 4667778776654 55554 56677776666666555543 589999997654
No 7
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=31.27 E-value=97 Score=27.29 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=39.6
Q ss_pred CCeeeeccccccccCCceeeEEEEEcCCCCeeEEeeeecccCccchHHHHHHHHHHHhCCCCCcEEeccccHHHHH
Q 007865 139 GDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSK 214 (587)
Q Consensus 139 ~dvi~~D~Ty~tn~y~~pl~~~~Gvn~~~~~~~~g~al~~~Et~es~~w~l~~~~~~m~~~~P~~iitD~~~a~~~ 214 (587)
++++.+|.|+..++| .++.||..-+.+ +|+.+ .+++.....-++..+.... .+.+|.+|+.....+
T Consensus 29 ~~~w~~D~~~~~g~~-----~l~~vD~~Sr~~-~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~i~sDnG~ef~s 94 (183)
T 3av9_A 29 PGIWQLDCTHLEGKV-----ILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRW---PVKTVHTDNGSNFTS 94 (183)
T ss_dssp TTEEEEEEEEETTEE-----EEEEEETTTTEE-EEEEE-SSCCHHHHHHHHHHHHHHS---CCCEEECSSHHHHHC
T ss_pred CCEEEEeccccCCcE-----EEEEEECCCCCE-EEEEe-CCccchHHHHHHHHHHHHc---CCcEEEecCchhcch
Confidence 467788888773332 345556655554 56544 4555555554444444333 359999999887643
No 8
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=30.34 E-value=1e+02 Score=30.38 Aligned_cols=71 Identities=11% Similarity=0.051 Sum_probs=47.2
Q ss_pred CCeeeecccccccc----CCc--eeeEEEEEcCCCCeeEEeeeecccCccchHHHHHHHHHHHhCCCCCc--EEeccccH
Q 007865 139 GDVVSFDATFRLNK----YNL--ICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPK--TIFTNENE 210 (587)
Q Consensus 139 ~dvi~~D~Ty~tn~----y~~--pl~~~~Gvn~~~~~~~~g~al~~~Et~es~~w~l~~~~~~m~~~~P~--~iitD~~~ 210 (587)
++++.+|.|+..-. -+. .....+-+|..-+ .++|+.+...|+.++..-+|.......+ .|. .|.+|+..
T Consensus 16 ~~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR-~ivg~~~~~~~~~~~v~~aL~~a~~~~G--~P~~~~i~sDnG~ 92 (327)
T 1bco_A 16 MQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTR-KILGWRCDVSENIDSIRLSFMDVVTRYG--IPEDFHITIDNTR 92 (327)
T ss_dssp TTEEEEEEEECSBCEECTTSCEECCEEEEEEETTTC-CEEEEEEESSCCHHHHHHHHHHHHHHHC--EESSCEEECCCTT
T ss_pred CcEEEecCCEEEEEEECCCCccceeEEEEEEECCCC-cEEEEEEECCCCHHHHHHHHHHHHHhcC--CCCCcEEEeeCch
Confidence 46788888864332 121 2345555676555 4578888888888888777776655544 577 99999875
Q ss_pred HH
Q 007865 211 AM 212 (587)
Q Consensus 211 a~ 212 (587)
..
T Consensus 93 ~f 94 (327)
T 1bco_A 93 GA 94 (327)
T ss_dssp ST
T ss_pred hh
Confidence 43
No 9
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=27.59 E-value=1.4e+02 Score=26.32 Aligned_cols=70 Identities=16% Similarity=-0.017 Sum_probs=43.1
Q ss_pred CCeeeecc-ccccccCCceeeEEEEEcCCCCeeEEeeeecccCccchHHHHHHHHHHHhCCCCCcEEeccccHHHHH
Q 007865 139 GDVVSFDA-TFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSK 214 (587)
Q Consensus 139 ~dvi~~D~-Ty~tn~y~~pl~~~~Gvn~~~~~~~~g~al~~~Et~es~~w~l~~~~~~m~~~~P~~iitD~~~a~~~ 214 (587)
.+++.+|. ++.... +...+.++.+|..-+.+ +++.+ .+.+.+... +.+..+.....|..|.||+.....+
T Consensus 13 ~~~~~~D~~~~~~~~-~g~~y~~~~iD~~Sr~~-~~~~~-~~~~~~~~~---~~l~~~~~~g~p~~i~sDnG~~f~s 83 (200)
T 2x78_A 13 FDKFFIDYIGPLPPS-QGYLYVLVVVDGMTGFT-WLYPT-KAPSTSATV---KSLNVLTSIAIPRVIHSDQGAAFTS 83 (200)
T ss_dssp TSEEEEEEECCCSCB-TTBCEEEEEEETTTCCE-EEEEE-SSSCHHHHH---HHHHHHTTTCCCSEEEECSCHHHHS
T ss_pred ccEEEEEEeCCCccC-CCCeEEEEEEeCCCCcE-EEEEC-CCCCHHHHH---HHHHHHHHhCCCcEEEecCCcceeh
Confidence 36777886 454433 33556777778765554 45555 555555543 3334444446799999999987644
No 10
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B
Probab=27.17 E-value=1.2e+02 Score=32.07 Aligned_cols=68 Identities=9% Similarity=0.186 Sum_probs=47.9
Q ss_pred CeeEEeeeeccc--CccchHHHHHHHHHHHhCCCC--CcEEeccccHHHHHHHHHHcccCccccccchHHHHHHHH
Q 007865 168 KNMLFGCAFLLD--ESTHSYVWLFESFLESMGNTQ--PKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRN 239 (587)
Q Consensus 168 ~~~~~g~al~~~--Et~es~~w~l~~~~~~m~~~~--P~~iitD~~~a~~~Ai~~vfP~~~h~~C~~Hi~~n~~~~ 239 (587)
+..++|+.-+.. .|.+++.-.+...++..+-.. -..++||....|..|++. ..|.-|.-|++.-+.+.
T Consensus 130 ~~~~L~~~~~~~~~~t~~~i~~~i~~~l~~~~l~~~~~v~~vtDnasn~~~~~~~----~~~i~C~~H~lnLi~~~ 201 (534)
T 2bw3_A 130 RDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDRGANVVKSLAN----NIRINCSSHLLSNVLEN 201 (534)
T ss_dssp EEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEEECCCHHHHHHTTT----SEEEECHHHHHHHHHHH
T ss_pred EEEEEeEeecCCCCCCHHHHHHHHHHHHHHcCCCcccceeEECCCHHHHHHHHhc----CcccccHHHHHHHHHHH
Confidence 345777776763 566776666666665544332 556899999999888764 35889999999887765
No 11
>1ex4_A Integrase; SH3-like domain, nonspecific DNA binding beta sheet, CIS-Pro viral protein; HET: CPS; 2.80A {Human immunodeficiency virus 1} SCOP: b.34.7.1 c.55.3.2 PDB: 1qmc_A 1ihv_A 1ihw_A
Probab=24.79 E-value=1.2e+02 Score=27.95 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=38.9
Q ss_pred CeeeeccccccccCCceeeEEEEEcCCCCeeEEeeeecccCccchHHHHHHHHHHHhCCCCCcEEeccccHHHH
Q 007865 140 DVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMS 213 (587)
Q Consensus 140 dvi~~D~Ty~tn~y~~pl~~~~Gvn~~~~~~~~g~al~~~Et~es~~w~l~~~~~~m~~~~P~~iitD~~~a~~ 213 (587)
.++.+|.|+..++ +.++.||..-+ .++|+.+ .+++.....-++..+... ..|.+|.||+.....
T Consensus 10 ~~w~~D~t~~~g~-----~~l~~vD~~Sr-~i~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~i~sDnG~eF~ 73 (239)
T 1ex4_A 10 GIWQLDCTHLEGK-----VILVAVHVASG-YIEAEVI-PAETGQETAYFLLKLAGR---WPVKTIHTDNGSNFT 73 (239)
T ss_dssp GEEEEEEEEETTE-----EEEEEECTTTC-CEEEECC-SSSSTTHHHHHHHHHHHH---SCCCEEEECCCHHHH
T ss_pred CEEEEeccccCCe-----EEEEEEECCCC-eEEEEEe-CCCCHHHHHHHHHHHHHh---cCCcEEEecCcHHHH
Confidence 5788999988333 24455565544 4556644 455555555444333333 247999999998764
No 12
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=23.26 E-value=1.6e+02 Score=24.67 Aligned_cols=63 Identities=13% Similarity=0.026 Sum_probs=36.6
Q ss_pred CCeeeeccccccccCCceeeEEEEEcCCCCeeEEeeeecccCccchHHHHHHHHHHHhCCCCCcEEeccccHH
Q 007865 139 GDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEA 211 (587)
Q Consensus 139 ~dvi~~D~Ty~tn~y~~pl~~~~Gvn~~~~~~~~g~al~~~Et~es~~w~l~~~~~~m~~~~P~~iitD~~~a 211 (587)
.+++.+|.|+..++ +.++.+|..-+. ++|+.+ .+.+.+...-++. +......|.+|.+|+...
T Consensus 9 ~~~w~~D~~~~~g~-----~~l~~iD~~Sr~-~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~i~sDnG~~ 71 (164)
T 1c6v_A 9 LGTWQMDCTHLEGK-----IVIVAVHVASGF-IEAEVI-PQETGRQTALFLL---KLAGRWPITHLHTDNGAN 71 (164)
T ss_dssp TTEEEEEEEEETTE-----EEEEEECTTSCC-EEEEEC-SSCSHHHHHHHHH---HHHTTSCCCEEECCCCSS
T ss_pred CCEEEEeecccCCE-----EEEEEEEccCCE-EEEEEc-CCCchHHHHHHHH---HHHHhcCCCEEEeCCchh
Confidence 35778888887222 344447766654 455544 4555554443333 333333589999998753
No 13
>1x9b_A Hypothetical membrane protein TA0354_69_121; alpha protein, structural genomics, protein structure initiative, PSI; NMR {Thermoplasma acidophilum} SCOP: a.10.2.1
Probab=22.66 E-value=78 Score=21.83 Aligned_cols=45 Identities=9% Similarity=0.121 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhcCCCchHHHHHHHhhhcccc
Q 007865 251 KYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWC 296 (587)
Q Consensus 251 ~~~~~~v~~~~t~~eFe~~w~~l~~~~~l~~~~wl~~l~~~r~~W~ 296 (587)
..|...|. +++..+|-....++..--.--+..|...|-+.+++|-
T Consensus 7 ~~Fe~~In-S~SK~~Fv~nL~ELE~is~rlg~~Y~~~LeeaK~kWk 51 (53)
T 1x9b_A 7 AKFESMIN-SPSKSVFVRNLNELEALAVRLGKSYRIQLDQAKEKWK 51 (53)
T ss_dssp HHHHHHHH-SCCHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHC
T ss_pred HHHHHHhC-CccHHHHHHhHHHHHHHHHHHchHHHHHHHHHHHhhc
Confidence 34666666 8999999998887754211123467777777788884
No 14
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=21.80 E-value=27 Score=23.13 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=13.2
Q ss_pred CceeeecccccccCcc
Q 007865 429 QDISCSCKLFERMGIL 444 (587)
Q Consensus 429 ~~~~CsC~~fe~~Gip 444 (587)
..-.|+|++|..-|.|
T Consensus 20 ~~~~C~CG~y~~~~kp 35 (42)
T 2l0z_A 20 SLGGCRCGKYPNLKKP 35 (42)
T ss_dssp TTSSBTTTTBCCCCCC
T ss_pred CCceeccccccCCCCc
Confidence 4668999999987776
No 15
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=20.38 E-value=62 Score=24.77 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=15.4
Q ss_pred ECCeEEEEEeeCCCCCCC
Q 007865 6 SNGVWVISHINFEHNHEL 23 (587)
Q Consensus 6 ~~~~w~v~~~~~~HNH~l 23 (587)
++..-.++.+.++|||++
T Consensus 56 ~d~~~~~~tY~G~H~H~~ 73 (76)
T 2ayd_A 56 HDTKLLITTYEGKHDHDM 73 (76)
T ss_dssp SSTTEEEEEEESCCSSCC
T ss_pred CCCCEEEEEEccCcCCCC
Confidence 456788899999999997
Done!