Query 007865
Match_columns 587
No_of_seqs 299 out of 1103
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 12:25:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007865.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007865hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cxqa_ c.55.3.2 (A:) Retrovir 67.4 11 0.00079 30.4 8.7 70 139-213 7-76 (147)
2 d1exqa_ c.55.3.2 (A:) Retrovir 66.7 3.7 0.00027 33.9 5.5 64 141-214 5-68 (154)
3 d2bw3a2 c.55.3.12 (A:163-609) 39.1 42 0.003 31.3 8.9 68 168-239 43-114 (447)
4 d1c6va_ c.55.3.2 (A:) Retrovir 28.2 46 0.0034 26.6 6.1 62 141-212 6-67 (159)
5 d1ob1c2 g.3.11.4 (C:46-96) Mer 21.7 15 0.0011 23.9 1.0 20 428-447 26-49 (51)
6 d1wj2a_ g.79.1.1 (A:) WRKY DNA 21.5 26 0.0019 24.6 2.5 18 6-23 52-69 (71)
7 d1x9ba_ a.10.2.1 (A:) Hypothet 20.9 50 0.0036 21.0 3.5 44 252-296 8-51 (53)
8 d3begb1 d.58.7.1 (B:121-207) S 12.6 87 0.0064 22.0 3.8 42 129-193 15-56 (87)
9 d1yvua2 c.55.3.10 (A:315-706) 12.2 2.5E+02 0.018 25.9 8.1 66 141-206 184-254 (392)
10 d1sfka_ a.190.1.1 (A:) Flavivi 12.0 22 0.0016 25.0 -0.0 34 444-477 19-53 (73)
No 1
>d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}
Probab=67.35 E-value=11 Score=30.37 Aligned_cols=70 Identities=13% Similarity=0.040 Sum_probs=44.1
Q ss_pred CCeeeeccccccccCCceeeEEEEEcCCCCeeEEeeeecccCccchHHHHHHHHHHHhCCCCCcEEeccccHHHH
Q 007865 139 GDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMS 213 (587)
Q Consensus 139 ~dvi~~D~Ty~tn~y~~pl~~~~Gvn~~~~~~~~g~al~~~Et~es~~w~l~~~~~~m~~~~P~~iitD~~~a~~ 213 (587)
++++.+|-|+.....+.. +..+.+|..-+- +.++ .+..++.......|..+...++ .|..|.||......
T Consensus 7 ~~~w~~D~~~~~~~~~~~-~l~v~vD~~Sr~-i~~~-~~~~~t~~~~~~~l~~~~~~~g--~p~~i~sDnG~~F~ 76 (147)
T d1cxqa_ 7 LQIWQTDFTLEPRMAPRS-WLAVTVDTASSA-IVVT-QHGRVTSVAAQHHWATAIAVLG--RPKAIKTDNGSCFT 76 (147)
T ss_dssp CCEEEEEEEECGGGTTSC-EEEEEEETTTCC-EEEE-EESSCCHHHHHHHHHHHHHHHC--CCSEEECCSCHHHH
T ss_pred CCEEEEEEEEecCCCCeE-EEEEEEecccce-eccc-ccCccchHHHHHHHHHHHHHhC--CCeEEEeccccccc
Confidence 367778877765443333 344556765543 4444 4566777666555555555554 59999999988764
No 2
>d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=66.66 E-value=3.7 Score=33.92 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=43.8
Q ss_pred eeeeccccccccCCceeeEEEEEcCCCCeeEEeeeecccCccchHHHHHHHHHHHhCCCCCcEEeccccHHHHH
Q 007865 141 VVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSK 214 (587)
Q Consensus 141 vi~~D~Ty~tn~y~~pl~~~~Gvn~~~~~~~~g~al~~~Et~es~~w~l~~~~~~m~~~~P~~iitD~~~a~~~ 214 (587)
+..+|.|+..|+| .++.||..-+ ++++.. +.+++.+...-+|..+... ..|+.|.||+.....+
T Consensus 5 ~W~~D~~~~~~k~-----ilv~vD~~Sr-~~~~~~-~~~~~~~~v~~~l~~~~~~---~~p~~I~sDnG~eF~s 68 (154)
T d1exqa_ 5 IWQLDCTHLEGKV-----ILVAVHVASG-YIEAEV-IPAETGQETAYFLLKLAGR---WPVKTIHTDNGSNFTG 68 (154)
T ss_dssp EEEEEEEEETTEE-----EEEEEETTTT-EEEEEE-ESSSSHHHHHHHHHHHHHH---SCCCEEECCCCGGGTS
T ss_pred ceeeEEEEECCEE-----EEEEEECcCC-cEEEEE-ecCcchHHHHhhhhhheec---cCCCEEEEcCCccccc
Confidence 6678888877764 5677887755 445544 4667777776666665543 2489999999876643
No 3
>d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain {House fly (Musca domestica) [TaxId: 7370]}
Probab=39.11 E-value=42 Score=31.33 Aligned_cols=68 Identities=10% Similarity=0.209 Sum_probs=47.6
Q ss_pred CeeEEeeeecccC--ccchHHHHHHHHHHHhC--CCCCcEEeccccHHHHHHHHHHcccCccccccchHHHHHHHH
Q 007865 168 KNMLFGCAFLLDE--STHSYVWLFESFLESMG--NTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRN 239 (587)
Q Consensus 168 ~~~~~g~al~~~E--t~es~~w~l~~~~~~m~--~~~P~~iitD~~~a~~~Ai~~vfP~~~h~~C~~Hi~~n~~~~ 239 (587)
+..++||.-+..+ +.+++...+...+...+ .+.-..++||....|..+ +++..+.-|.-|.+.-+...
T Consensus 43 ~~~~L~~~~~~~~~~tg~~i~~~l~~~l~~~~i~~~~~~~~~~D~a~n~~~~----~~~~~~i~C~aH~Lnl~v~d 114 (447)
T d2bw3a2 43 RDLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDRGANVVKS----LANNIRINCSSHLLSNVLEN 114 (447)
T ss_dssp EEEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEEECCCHHHHHH----TTTSEEEECHHHHHHHHHHH
T ss_pred eEEEEEEEEeCCCCCcHHHHHHHHHHHHHHcCCCcceEEEEEcCCcHhhHHH----hhccccccchhhhhhhhhHH
Confidence 3567777666533 56777666666665533 345667899999877654 77888899999988776554
No 4
>d1c6va_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Simian immunodeficiency virus [TaxId: 11723]}
Probab=28.16 E-value=46 Score=26.63 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=38.2
Q ss_pred eeeeccccccccCCceeeEEEEEcCCCCeeEEeeeecccCccchHHHHHHHHHHHhCCCCCcEEeccccHHH
Q 007865 141 VVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAM 212 (587)
Q Consensus 141 vi~~D~Ty~tn~y~~pl~~~~Gvn~~~~~~~~g~al~~~Et~es~~w~l~~~~~~m~~~~P~~iitD~~~a~ 212 (587)
+..+|.||..++| .++.||..- .++.++ .+.+++.+...-++..+ .....|..|.||+....
T Consensus 6 ~W~~D~t~~~~k~-----il~~vD~~S-r~~~~~-~~~~~~a~~v~~~l~~~---~~~~~~~~I~sDnG~~F 67 (159)
T d1c6va_ 6 TWQMDCTHLEGKI-----VIVAVHVAS-GFIEAE-VIPQETGRQTALFLLKL---AGRWPITHLHTDNGANF 67 (159)
T ss_dssp EEEEEEEEETTEE-----EEEEECTTS-CCEEEE-ECSSCSHHHHHHHHHHH---HTTSCCCEEECCCCSST
T ss_pred ceeeEEEEECCEE-----EEEEEECCC-CeEEEE-EeeccCHHHHHHHHHHH---hhccCCceeEecCCCcc
Confidence 3568889887764 455566554 445555 55666776655554433 33335668999988643
No 5
>d1ob1c2 g.3.11.4 (C:46-96) Merozoite surface protein 1 (MSP-1) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=21.71 E-value=15 Score=23.85 Aligned_cols=20 Identities=35% Similarity=0.886 Sum_probs=15.9
Q ss_pred CCceeeecccccc----cCcchhh
Q 007865 428 TQDISCSCKLFER----MGILCRH 447 (587)
Q Consensus 428 ~~~~~CsC~~fe~----~GipC~H 447 (587)
...+.|+|.+-.. .|+.|+|
T Consensus 26 skkIvC~Ck~p~~~~~~~GVFCS~ 49 (51)
T d1ob1c2 26 GKKITCECTKPDSYPLFDGIFCSH 49 (51)
T ss_dssp SCCCEEEECSTTCCEEGGGTEECC
T ss_pred cceEEEEecCCCCCcccceEEeec
Confidence 4689999998554 6999987
No 6
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=21.47 E-value=26 Score=24.65 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=14.8
Q ss_pred ECCeEEEEEeeCCCCCCC
Q 007865 6 SNGVWVISHINFEHNHEL 23 (587)
Q Consensus 6 ~~~~w~v~~~~~~HNH~l 23 (587)
+++.-.++.+.++|||++
T Consensus 52 ~d~~~~~vtY~G~H~h~~ 69 (71)
T d1wj2a_ 52 TDPKAVVTTYEGKHNHDL 69 (71)
T ss_dssp TTTSEEEEEEESCCSSCC
T ss_pred CCCCEEEEEEeeEeCCCC
Confidence 456778888999999986
No 7
>d1x9ba_ a.10.2.1 (A:) Hypothetical membrane protein Ta0354, soluble domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=20.89 E-value=50 Score=20.95 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=29.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcCCCchHHHHHHHhhhcccc
Q 007865 252 YLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWC 296 (587)
Q Consensus 252 ~~~~~v~~~~t~~eFe~~w~~l~~~~~l~~~~wl~~l~~~r~~W~ 296 (587)
.|...|+ +++..+|-....++.+-----+..|...+-+.+++|-
T Consensus 8 kFEs~IN-S~SK~~FV~NL~ELE~la~kLGk~Y~~qLe~~K~kWk 51 (53)
T d1x9ba_ 8 KFESMIN-SPSKSVFVRNLNELEALAVRLGKSYRIQLDQAKEKWK 51 (53)
T ss_dssp HHHHHHH-SCCHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHC
T ss_pred HHHHHHc-CchHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 4555565 8899999999887754211113467777777788884
No 8
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.60 E-value=87 Score=22.05 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=30.2
Q ss_pred cccHHHHHhcCCeeeeccccccccCCceeeEEEEEcCCCCeeEEeeeecccCccchHHHHHHHHH
Q 007865 129 GRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFL 193 (587)
Q Consensus 129 ~~~~~~~~~f~dvi~~D~Ty~tn~y~~pl~~~~Gvn~~~~~~~~g~al~~~Et~es~~w~l~~~~ 193 (587)
..-...|..||+|+.++-- .. |||+|.=++.++-..+++.+-
T Consensus 15 ~~l~~~F~~~G~v~~~~i~-----------------~~------g~afV~f~~~~~a~~Ai~~l~ 56 (87)
T d3begb1 15 QDLKDHMREAGDVCYADVY-----------------RD------GTGVVEFVRKEDMTYAVRKLD 56 (87)
T ss_dssp THHHHHHGGGSCEEEEEEC-----------------TT------SEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHhhhccccccccc-----------------cc------ceeeEEeCCHHHHHHHHHHhC
Confidence 3456778889998766421 11 689999999999888887653
No 9
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]}
Probab=12.16 E-value=2.5e+02 Score=25.95 Aligned_cols=66 Identities=8% Similarity=-0.108 Sum_probs=36.4
Q ss_pred eeeeccccccccCCc-eee-EEEEEcCCCCeeEEeeeecccCccchHHHHHHHHHH---HhCCCCCcEEec
Q 007865 141 VVSFDATFRLNKYNL-ICA-PFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLE---SMGNTQPKTIFT 206 (587)
Q Consensus 141 vi~~D~Ty~tn~y~~-pl~-~~~Gvn~~~~~~~~g~al~~~Et~es~~w~l~~~~~---~m~~~~P~~iit 206 (587)
+|.+|.|+....-+. +.+ ..+..+..|....+.........++-..-+++..++ ...+..|..||.
T Consensus 184 iIGiDv~h~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ee~~~~~~~~~l~~~~~~~~~~P~rIIi 254 (392)
T d1yvua2 184 FVGIDISRITRDGKTVNAVAFTKIFNSKGELVRYYLTSYPAFGEKLTEKAIGDVFSLLEKLGFKKGSKIVV 254 (392)
T ss_dssp EEEECEEECCCSSSCCCEEEEEEEECTTSCEEEEEEEEECSCTTHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred EEEEEEEecCCCCCcccEEEEEEEEcCCCCEEEEEEEecCCccHHHHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 466999987644333 333 345567777766555444444444443444443332 335667887763
No 10
>d1sfka_ a.190.1.1 (A:) Flavivirus capsid protein C {Kunjin virus [TaxId: 11077]}
Probab=11.95 E-value=22 Score=24.99 Aligned_cols=34 Identities=29% Similarity=0.514 Sum_probs=26.1
Q ss_pred chhhHHHHhhhCCcccc-CccccccccccccccCc
Q 007865 444 LCRHALKAFDFNNLTQI-PVQYILKRWTKEAKKGI 477 (587)
Q Consensus 444 pC~Hil~Vl~~~~v~~i-P~~yil~RWtk~ak~~~ 477 (587)
|-|-+|+++.......| |..-+++||..--|...
T Consensus 19 P~R~vLA~laFfRFtAi~Pt~~ll~RW~~v~K~~A 53 (73)
T d1sfka_ 19 PTRFVLALLAFFRFTAIAPTRAVLDRWRSVNKQTA 53 (73)
T ss_dssp CHHHHHHHHHHHHHTTCCCCHHHHHHHTTSCHHHH
T ss_pred cHHHHHHHHHHHHHHccCCCHHHHHHHhcccHHHH
Confidence 56778888888887777 67779999987666543
Done!