BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007866
(586 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 130/324 (40%), Gaps = 49/324 (15%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGR------- 64
VV G GF+G LV +L+ELG +V V D+LSSGR
Sbjct: 4 VVTGGAGFIGSHLVDKLVELGYEVVVV-------------------DNLSSGRREFVNPS 44
Query: 65 AEYHQVDVRDISQIKKVLEGASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRE 121
AE H D++D S + VF+ A L+T + + V NV+ R+
Sbjct: 45 AELHVRDLKDYSWGAGI--KGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQ 102
Query: 122 CKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLL 181
VR +V+ S++ V D +E +K + KA E + + G+
Sbjct: 103 TGVRTVVFASSSTVYGDADVIPTPEEEP----YKPISVYGAAKAAGEVMCATYARLFGVR 158
Query: 182 TCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAE 239
A+R +NV GP V ++ L + ++G G + YV + A + A +
Sbjct: 159 CLAVRYANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWK 218
Query: 240 ALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKL----PTGVVW-----Y 290
+ + +A + N++ ++ D I+ E LG RP I+L P G W Y
Sbjct: 219 KFEE--MDAPFLALNVGNVDAVRVLDIAQIVAEVLGL-RPEIRLVPSTPDGRGWPGDVKY 275
Query: 291 IILLVKWIHEKLGLRTYNHSLSAC 314
+ L V + + G R S A
Sbjct: 276 MTLAVTKLMKLTGWRPTMTSAEAV 299
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 128/317 (40%), Gaps = 39/317 (12%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
VV G GF+G LV +L+ELG +V V +Q D + G AE H D
Sbjct: 4 VVTGGAGFIGSHLVDKLVELGYEVVVV----DIVQRD------------TGGSAELHVRD 47
Query: 72 VRDISQIKKVLEGASTVFYVDATD---LNTDDFYNCYMIIVQGAKNVVTACRECKVRRLV 128
++D S + VF+ A L+T + + V NV+ R+ VR +V
Sbjct: 48 LKDYSWGAGI--KGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVV 105
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
+ S++ V D +E +K + KA E + + G+ A+R +
Sbjct: 106 FASSSTVYGDADVIPTPEEEP----YKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYA 161
Query: 189 NVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMV 246
NV GP V ++ L + ++G G + YV + A + A + + +
Sbjct: 162 NVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEE--M 219
Query: 247 SVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKL----PTGVVW-----YIILLVKW 297
+A + N++ ++ D I+ E LG RP I+L P G W Y+ L V
Sbjct: 220 DAPFLALNVGNVDAVRVLDIAQIVAEVLGL-RPEIRLVPSTPDGRGWPGDVKYMTLAVTK 278
Query: 298 IHEKLGLRTYNHSLSAC 314
+ + G R S A
Sbjct: 279 LMKLTGWRPTMTSAEAV 295
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 105/251 (41%), Gaps = 19/251 (7%)
Query: 6 AIPRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRA 65
A P+ ++ GF+G +L+ LL+L + +V + + Q + E SL+ + S
Sbjct: 25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWS-NF 83
Query: 66 EYHQVDVRDISQIKKVLEGASTVFY---VDATDLNTDDFYNCYMIIVQGAKNVVTACREC 122
++ Q D+R++ G V + + + + +D + G N++ A R+
Sbjct: 84 KFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA 143
Query: 123 KVRRLVYNSTADVVFD--GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGL 180
KV+ Y +++ D G + + + + +L A + G
Sbjct: 144 KVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCY------GF 197
Query: 181 LTCALRPSNVFG----PGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234
T LR NVFG P ++P + G +I G GE DF Y+EN A+
Sbjct: 198 STIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQAN 257
Query: 235 VCAAEA-LDSR 244
+ AA A LD+R
Sbjct: 258 LLAATAGLDAR 268
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 105/254 (41%), Gaps = 47/254 (18%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
T V GF+G LV+RLLE G VR T DP+ + L +AE H
Sbjct: 6 ETVCVTGASGFIGSWLVMRLLERGY-TVRAT------VRDPTNVKK-VKHLLDLPKAETH 57
Query: 69 ----QVDVRDISQIKKVLEGASTVFYV-DATDLNTDDFYN-CYMIIVQGAKNVVTACREC 122
+ D+ D + ++G + VF+V D + D N ++G ++ +C
Sbjct: 58 LTLWKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAA 117
Query: 123 K-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMC--------------DLKAQA 167
K VRRLV+ S+A V H + DE+ CW + C L QA
Sbjct: 118 KTVRRLVFTSSAGTVNIQEHQLPVYDES---CWSDMEF-CRAKKMTAWMYFVSKTLAEQA 173
Query: 168 EALVLFANNIDGLLTCALRPSNVFGPG-DTQLVPLLVNLAKPGWTKFIIGSGENMS---- 222
NNID + + P+ V GP + + P L+ P I G+ + S
Sbjct: 174 AWKYAKENNIDFI---TIIPTLVVGPFIMSSMPPSLITALSP-----ITGNEAHYSIIRQ 225
Query: 223 -DFTYVENVAHAHV 235
F +++++ +AH+
Sbjct: 226 GQFVHLDDLCNAHI 239
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 92/390 (23%), Positives = 157/390 (40%), Gaps = 54/390 (13%)
Query: 9 RTCVVLNGRGFVGRSLVLRLL-ELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEY 67
R ++ G GF+G +LV ++ E +V V T + L SL P + S R +
Sbjct: 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNL-----MSLAPVAQSE-RFAF 55
Query: 68 HQVDVRDISQIKKVLEGA--------STVFYVDATDLNTDDFYNCYMI----IVQGAKNV 115
+VD+ D +++ +V + +VD + F ++ +++ A+
Sbjct: 56 EKVDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAY 115
Query: 116 VTACRECKVRRLVYNS-TADVVFDGSHDIHNGDE--TLTCCWKFQDLMCDLKAQAEALVL 172
A E K ++ + D V+ D+H+ D+ T T + KA ++ LV
Sbjct: 116 WNALTEDKKSAFRFHHISTDEVYG---DLHSTDDFFTETTPYAPSSPYSASKASSDHLVR 172
Query: 173 FANNIDGLLTCALRPSNVFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENV 230
GL T SN +GP +L+PL++ A G + + G+G+ + D+ YVE+
Sbjct: 173 AWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKSLPVYGNGQQIRDWLYVEDH 232
Query: 231 AHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWY 290
A A C A G + I K D + I E L P P GV Y
Sbjct: 233 ARALYCVA------TTGKVGETYNIGGHNERKNLDVVETICELLEELAP--NKPHGVAHY 284
Query: 291 IILLVKWIHEKLGLRTYNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSST 350
L+ ++ ++ G H L Y + + R C+ P + E G+ T
Sbjct: 285 RD-LITFVADRPG-----HDLR--YAIDASKIARELGCV---------PQETFESGMRKT 327
Query: 351 IQSFSHLARDSSLAYSRDFNEQSKVEKLLG 380
+Q + LA +S +D + Q + L G
Sbjct: 328 VQWY--LANESWWKQVQDGSYQGERLGLKG 355
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 111/258 (43%), Gaps = 22/258 (8%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEY 67
P+T ++ GF+G +L+ +LL+L + ++ + + + Q + E +L+ S R +
Sbjct: 38 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWS-RFCF 96
Query: 68 HQVDVRDISQIKKVLEGASTVFY---VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKV 124
+ D+RD++ ++V++G V + + + + D + G N++ A + +V
Sbjct: 97 IEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQV 156
Query: 125 RRLVYNSTADVVFDGSH----DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGL 180
+ Y +++ G H + + + ++ AQ A G
Sbjct: 157 QSFTYAASSSTY--GDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTY------GF 208
Query: 181 LTCALRPSNVFG----PGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234
T LR NVFG P ++P G +I G GE DF Y++NV +
Sbjct: 209 KTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMN 268
Query: 235 VCAAEALDSRMVSVAGMA 252
+ +A A DS ++ +A
Sbjct: 269 ILSALAKDSAKDNIYNVA 286
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 111/258 (43%), Gaps = 22/258 (8%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEY 67
P+T ++ GF+G +L+ +LL+L + ++ + + + Q + E +L+ S R +
Sbjct: 25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWS-RFCF 83
Query: 68 HQVDVRDISQIKKVLEGASTVFY---VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKV 124
+ D+RD++ ++V++G V + + + + D + G N++ A + +V
Sbjct: 84 IEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQV 143
Query: 125 RRLVYNSTADVVFDGSH----DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGL 180
+ Y +++ G H + + + ++ AQ A G
Sbjct: 144 QSFTYAASSSTY--GDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTY------GF 195
Query: 181 LTCALRPSNVFG----PGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234
T LR NVFG P ++P G +I G GE DF Y++NV +
Sbjct: 196 KTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMN 255
Query: 235 VCAAEALDSRMVSVAGMA 252
+ +A A DS ++ +A
Sbjct: 256 ILSALAKDSAKDNIYNVA 273
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 111/258 (43%), Gaps = 22/258 (8%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEY 67
P+T ++ GF+G +L+ +LL+L + ++ + + + Q + E +L+ S R +
Sbjct: 19 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWS-RFCF 77
Query: 68 HQVDVRDISQIKKVLEGASTVFY---VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKV 124
+ D+RD++ ++V++G V + + + + D + G N++ A + +V
Sbjct: 78 IEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQV 137
Query: 125 RRLVYNSTADVVFDGSH----DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGL 180
+ Y +++ G H + + + ++ AQ A G
Sbjct: 138 QSFTYAASSSTY--GDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTY------GF 189
Query: 181 LTCALRPSNVFG----PGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234
T LR NVFG P ++P G +I G GE DF Y++NV +
Sbjct: 190 KTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMN 249
Query: 235 VCAAEALDSRMVSVAGMA 252
+ +A A DS ++ +A
Sbjct: 250 ILSALAKDSAKDNIYNVA 267
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 111/258 (43%), Gaps = 22/258 (8%)
Query: 8 PRTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEY 67
P+T ++ GF+G +L+ +LL+L + ++ + + + Q + E +L+ S R +
Sbjct: 25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWS-RFCF 83
Query: 68 HQVDVRDISQIKKVLEGASTVFY---VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKV 124
+ D+RD++ ++V++G V + + + + D + G N++ A + +V
Sbjct: 84 IEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQV 143
Query: 125 RRLVYNSTADVVFDGSH----DIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGL 180
+ Y +++ G H + + + ++ AQ A G
Sbjct: 144 QSFTYAASSSTY--GDHPALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTY------GF 195
Query: 181 LTCALRPSNVFG----PGDT--QLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAH 234
T LR NVFG P ++P G +I G GE DF Y++NV +
Sbjct: 196 KTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMN 255
Query: 235 VCAAEALDSRMVSVAGMA 252
+ +A A DS ++ +A
Sbjct: 256 ILSALAKDSAKDNIYNVA 273
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 108/263 (41%), Gaps = 30/263 (11%)
Query: 12 VVLNGRGFVGRSLVLRLLELGK-CIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70
++ G GF+G ++V +++ + +V + T + L+ L D S R +
Sbjct: 4 LITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLES------LSDISESNRYNFEHA 57
Query: 71 DVRDISQIKKVLEGA--------STVFYVDATDLNTDDFYNCYMI----IVQGAKNVVTA 118
D+ D ++I ++ E + +VD + F ++ +++ A+ +A
Sbjct: 58 DICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSA 117
Query: 119 CRECKVR--RLVYNSTADVVFDGSH--DIHNGDE----TLTCCWKFQDLMCDLKAQAEAL 170
E K R + ST +V D H ++ N T T + KA ++ L
Sbjct: 118 LGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHL 177
Query: 171 VLFANNIDGLLTCALRPSNVFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVE 228
V GL T SN +GP +L+PL++ A G I G G+ + D+ YVE
Sbjct: 178 VRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVE 237
Query: 229 NVAHA-HVCAAEALDSRMVSVAG 250
+ A A H+ E ++ G
Sbjct: 238 DHARALHMVVTEGKAGETYNIGG 260
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 115/302 (38%), Gaps = 50/302 (16%)
Query: 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70
+V+ G GFVG +LV RLLELG V V D+ S + +PD + + +
Sbjct: 35 VMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAE------KINVPDHPA---VRFSET 85
Query: 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACREC-------K 123
+ D + + + + VF++ N ++ + N +T + +
Sbjct: 86 SITDDALLASLQDEYDYVFHLATYHGNQSSIHDP---LADHENNTLTTLKLYERLKHFKR 142
Query: 124 VRRLVYN----STADVVFDGSHDIHNGDETLTCCWKFQDLMCDL-KAQAEALVLFANNID 178
++++VY+ S A+ FD D +ET D + K E ++ +
Sbjct: 143 LKKVVYSAAGCSIAEKTFD---DAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQH 199
Query: 179 GLLTCALRPSNVFGPGDT---------------QLVPLLVNLAKPGWTKFIIGSGENMSD 223
L T R NV+GPG+ + P + A G + G D
Sbjct: 200 QLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRD 259
Query: 224 FTYVENVAHAHV-CAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIK 282
F +VE+VA+ + CAA+ G + I + + D + I E G +
Sbjct: 260 FIFVEDVANGLIACAADG-------TPGGVYNIASGKETSIADLATKINEITGNNTELDR 312
Query: 283 LP 284
LP
Sbjct: 313 LP 314
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 101/255 (39%), Gaps = 43/255 (16%)
Query: 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAE---- 66
+V G GF+G +V LL G + + D+L++G+ E
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEVAVL-------------------DNLATGKRENVPK 43
Query: 67 ---YHQVDVRDISQIKKVLE-----GASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTA 118
+ +VD+RD +++ S + ++ +D + + + G N++ A
Sbjct: 44 GVPFFRVDLRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEA 103
Query: 119 CRECKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNID 178
CR+ V +LV+ ST ++ + +ET + + KA E +
Sbjct: 104 CRQYGVEKLVFASTGGAIYGEVPEGERAEETWPP--RPKSPYAASKAAFEHYLSVYGQSY 161
Query: 179 GLLTCALRPSNVFGP-----GDTQLVPLLVNLAKPG-----WTKFIIGSGENMSDFTYVE 228
GL +LR NV+GP G+ +V + G + + G + D+ YV
Sbjct: 162 GLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVG 221
Query: 229 NVAHAHVCAAEALDS 243
+VA AH A +L+
Sbjct: 222 DVAEAHALALFSLEG 236
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 113/286 (39%), Gaps = 34/286 (11%)
Query: 11 CVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQV 70
+V G GF+G + + +LE + +P+ L D R + +
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDP----RYTFVKG 61
Query: 71 DVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVV-------TACRECK 123
DV D +K+++ V ++ A + + D + I + NV+ + RE
Sbjct: 62 DVADYELVKELVRKVDGVVHL-AAESHVDRSISSPEIFLHS--NVIGTYTLLESIRRENP 118
Query: 124 VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTC 183
R V+ ST +V DI G T KA ++ LVL L
Sbjct: 119 EVRFVHVSTDEVY----GDILKGSFTENDRLMPSSPYSATKAASDMLVLGWTRTYNLNAS 174
Query: 184 ALRPSNVFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241
R +N +GP +L+P + A G I G+G+N+ D+ YVE+ HV A E +
Sbjct: 175 ITRCTNNYGPYQFPEKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVED----HVRAIELV 230
Query: 242 ----DSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKL 283
+SR + TNLE +K IIL +G I+L
Sbjct: 231 LLKGESREIYNISAGEEKTNLEVVK------IILRLMGKGEELIEL 270
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 127/296 (42%), Gaps = 33/296 (11%)
Query: 4 DEAIPRTCVVLNGRGFVGRSLVLRLLE-LGKCIVRVTDSTQSLQLDPSESNSLLP--DSL 60
DE +T ++ G GFVG +L E K V V D +S L + S L +L
Sbjct: 6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNL 65
Query: 61 SSGRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMII---VQGAKNVVT 117
+ E D+ + +++ LE + ++ N +++ Q N++
Sbjct: 66 IGFKGEVIAADINNPLDLRR-LEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLE 124
Query: 118 ACRECKVRRLVYNSTADVVFD-GSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANN 176
R K + ++Y S+A V + + ++ +E+ + F L D VL +N
Sbjct: 125 IARSKKAK-VIYASSAGVYGNTKAPNVVGKNESPENVYGFSKLCMD------EFVLSHSN 177
Query: 177 IDGLLTCALRPSNVFGPGD---TQLVPLLVNLAKPGWTKF----IIGSGENMSDFTYVEN 229
+ + LR NV+GP + + +++ LA G F + GE + DF Y+E+
Sbjct: 178 DN--VQVGLRYFNVYGPREFYKEKTASMVLQLAL-GAMAFKEVKLFEFGEQLRDFVYIED 234
Query: 230 VAHAHVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLG-YQRPFIKLP 284
V A+V A +A S + +V + + + +SI+ E LG ++ +IK P
Sbjct: 235 VIQANVKAMKAQKSGVYNVGYS-------QARSYNEIVSILKEHLGDFKVTYIKNP 283
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 31 LGKCIVR-VTDSTQSLQLDPSESNSLLPDSLS----SGRAEYHQVDVRDISQIKKVLEGA 85
GKC VR V D+T + ++ + L ++ R + DVRD+ ++ LEG
Sbjct: 33 FGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGV 92
Query: 86 STVFYVDATDLNTDDFYN---CYMIIVQGAKNVVTACRECKVRRLVYNST 132
+ A YN C + GA NV+ AC + + +++ ST
Sbjct: 93 DICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALST 142
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 72/348 (20%), Positives = 130/348 (37%), Gaps = 45/348 (12%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+V G GF+G V +LL V + L + + + L + R + D
Sbjct: 4 LVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGD 63
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMII---VQGAKNVVTACRECKVRRLV 128
+RD + + L G + + A + VQG + ++ + V R+V
Sbjct: 64 IRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVV 123
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
+ ST +V GS I +G T + + KA ++ + + GL R
Sbjct: 124 HVSTDEVY--GS--IDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRITRCC 179
Query: 189 NVFGP--GDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMV 246
N +GP +L+PL V G T + G G N+ ++ + ++ H A R
Sbjct: 180 NNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDD--HCRGIALVLAGGR-- 235
Query: 247 SVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRT 306
AG + I + + I+L+ LG W V+ + ++ G
Sbjct: 236 --AGEIYHIGGGLELTNRELTGILLDSLGAD-----------WSS---VRKVADRKG--- 276
Query: 307 YNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
H L + D ++ +GY P VS +G++ T++ +
Sbjct: 277 --HDLR-----------YSLDGGKIERELGYRPQVSFADGLARTVRWY 311
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 113/287 (39%), Gaps = 55/287 (19%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLP-DSLSSGRAEYHQV 70
VV G GF+G +V +L SESN ++ D+LSSG E+
Sbjct: 5 VVTGGAGFIGSHVVDKL---------------------SESNEIVVIDNLSSGNEEFVNE 43
Query: 71 DVRDIS------QIKKVLEGASTVFYVDAT-DL-----NTDDFYNCYMIIVQGAKNVVTA 118
R + IK L+GA V+++ A D+ N D+ Y ++ ++ A
Sbjct: 44 AARLVKADLAADDIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVL---ATYRLLEA 100
Query: 119 CRECKVRRLVYNSTADVVFDGSHDIHNGDETLT---CCWKFQDLMCDLKAQAEALVLFAN 175
R+ V R+V+ ST+ V+ + I ++ T + L C EAL+
Sbjct: 101 MRKAGVSRIVFTSTS-TVYGEAKVIPTPEDYPTHPISLYGASKLAC------EALIESYC 153
Query: 176 NIDGLLTCALRPSNVFGPGDTQLV--PLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHA 233
+ + R +NV G T V ++ L + I+G+GE + Y+ + A
Sbjct: 154 HTFDMQAWIYRFANVIGRRSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDA 213
Query: 234 HVCAAEALDSRMVSVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPF 280
+ D R+ F I + + IK I+ E LG F
Sbjct: 214 MLFGLRG-DERV-----NIFNIGSEDQIKVKRIAEIVCEELGLSPRF 254
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 72/348 (20%), Positives = 129/348 (37%), Gaps = 45/348 (12%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQVD 71
+V G GF+G V +LL V + L + + + L + R + D
Sbjct: 4 LVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGD 63
Query: 72 VRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMII---VQGAKNVVTACRECKVRRLV 128
+RD + + L G + + A + VQG + ++ + V R+V
Sbjct: 64 IRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVV 123
Query: 129 YNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCALRPS 188
+ ST V GS I +G T + + KA ++ + + GL R
Sbjct: 124 HVSTNQVY--GS--IDSGSWTESSPLEPNSPYAASKAGSDLVARAYHRTYGLDVRITRCC 179
Query: 189 NVFGP--GDTQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMV 246
N +GP +L+PL V G T + G G N+ ++ + ++ H A R
Sbjct: 180 NNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDD--HCRGIALVLAGGR-- 235
Query: 247 SVAGMAFFITNLEPIKFWDFLSIILEGLGYQRPFIKLPTGVVWYIILLVKWIHEKLGLRT 306
AG + I + + I+L+ LG W V+ + ++ G
Sbjct: 236 --AGEIYHIGGGLELTNRELTGILLDSLGAD-----------WSS---VRKVADRKG--- 276
Query: 307 YNHSLSACYIVQLASRTRTFDCIAAQKHIGYSPVVSLEEGVSSTIQSF 354
H L + D ++ +GY P VS +G++ T++ +
Sbjct: 277 --HDLR-----------YSLDGGKIERELGYRPQVSFADGLARTVRWY 311
>pdb|2XD8|A Chain A, Capsid Structure Of The Infectious Prochlorococcus
Cyanophage P-Ssp7
pdb|2XD8|B Chain B, Capsid Structure Of The Infectious Prochlorococcus
Cyanophage P-Ssp7
pdb|2XD8|C Chain C, Capsid Structure Of The Infectious Prochlorococcus
Cyanophage P-Ssp7
pdb|2XD8|D Chain D, Capsid Structure Of The Infectious Prochlorococcus
Cyanophage P-Ssp7
pdb|2XD8|E Chain E, Capsid Structure Of The Infectious Prochlorococcus
Cyanophage P-Ssp7
pdb|2XD8|F Chain F, Capsid Structure Of The Infectious Prochlorococcus
Cyanophage P-Ssp7
pdb|2XD8|G Chain G, Capsid Structure Of The Infectious Prochlorococcus
Cyanophage P-Ssp7
Length = 375
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 203 VNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEALDSRMVSVAGMAFFITNLEPIK 262
N +PG T+ +GSG N SD + +A AA A+D + VS G L P +
Sbjct: 158 TNFVEPGGTQIRVGSGTNESDAFTASALVNAFYDAAAAMDEKGVSSQGRCAV---LNPRQ 214
Query: 263 FWDFLSII 270
++ + I
Sbjct: 215 YYALIQDI 222
>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|B Chain B, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|C Chain C, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|D Chain D, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|E Chain E, Crystal Structure Of Udp-Glucose 4-Epimerase
pdb|2C20|F Chain F, Crystal Structure Of Udp-Glucose 4-Epimerase
Length = 330
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 109/257 (42%), Gaps = 39/257 (15%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYHQ 69
+ ++ G G++G V +L++ G +V V D+ Q+ D+++ G A+++
Sbjct: 3 SILICGGAGYIGSHAVKKLVDEGLSVV-VVDNLQTGH----------EDAITEG-AKFYN 50
Query: 70 VDVRDISQIKKVL--EGASTVFYVDATDL---NTDDFYNCYMIIVQGAKNVVTACRECKV 124
D+RD + ++ V E V + A L + + Y V GA ++ E KV
Sbjct: 51 GDLRDKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKV 110
Query: 125 RRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLLTCA 184
+ +++STA + D+ +ET+T + + K E ++ + + L
Sbjct: 111 DKFIFSSTAATYGEVDVDLIT-EETMTNP---TNTYGETKLAIEKMLHWYSQASNLRYKI 166
Query: 185 LRPSNVFGPG-----------DTQLVPLLVNLAKPGWTKFII-------GSGENMSDFTY 226
R NV G +T L+PL++ +A K ++ G + D+ +
Sbjct: 167 FRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIH 226
Query: 227 VENVAHAHVCAAEALDS 243
VE++ AH + L +
Sbjct: 227 VEDLVAAHFLGLKDLQN 243
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 96/258 (37%), Gaps = 56/258 (21%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSL-----LPDSLSSG 63
R CV G GF+G ++ LLE G + +++ DP + LP +S
Sbjct: 3 RVCVT-GGTGFLGSWIIKSLLENGYSV------NTTIRADPERKRDVSFLTNLPG--ASE 53
Query: 64 RAEYHQVDVRDISQIKKVLEGASTVFYVDAT-DLNTDDFYNCYMI-IVQGAKNVVTACRE 121
+ + D+ + +EG +F+ + D + V GA ++ AC
Sbjct: 54 KLHFFNADLSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVN 113
Query: 122 CK-VRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDL----------KAQAEAL 170
K V+R +Y S+ V D DE+ W DL+ + K AE
Sbjct: 114 SKTVKRFIYTSSGSAVSFNGKDKDVLDES---DWSDVDLLRSVKPFGWNYAVSKTLAEKA 170
Query: 171 VL---FANNID----------GLLTCALRPSNVFGPGDTQLVPLLVNLAKPGWTKFIIGS 217
VL N ID G C P ++ + LV +L + G T+F
Sbjct: 171 VLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSI----EKALVLVLGKKEQIGVTRF---- 222
Query: 218 GENMSDFTYVENVAHAHV 235
+V++VA AH+
Sbjct: 223 -----HMVHVDDVARAHI 235
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 6/130 (4%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRA-EYHQV 70
+V G G++G VL LLE G V + + + + S SL +GR+ E+ ++
Sbjct: 6 LVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEM 65
Query: 71 DVRDISQIKKVLEGASTVFYV-----DATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR 125
D+ D ++++ + S + + A + + Y + + G ++ + V+
Sbjct: 66 DILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK 125
Query: 126 RLVYNSTADV 135
LV++S+A V
Sbjct: 126 NLVFSSSATV 135
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 6/130 (4%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRA-EYHQV 70
+V G G++G VL LLE G V + + + + S SL +GR+ E+ ++
Sbjct: 6 LVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEM 65
Query: 71 DVRDISQIKKVLEGASTVFYV-----DATDLNTDDFYNCYMIIVQGAKNVVTACRECKVR 125
D+ D ++++ + S + + A + + Y + + G ++ + V+
Sbjct: 66 DILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK 125
Query: 126 RLVYNSTADV 135
LV++S+A V
Sbjct: 126 NLVFSSSATV 135
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 6/130 (4%)
Query: 12 VVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRA-EYHQV 70
+V G G++G VL LLE G V + + + + S SL +GR+ E+ ++
Sbjct: 6 LVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEM 65
Query: 71 DVRDISQIKKVLEGASTVFYVDATDL-----NTDDFYNCYMIIVQGAKNVVTACRECKVR 125
D+ D ++++ + S + + L + + Y + + G ++ + V+
Sbjct: 66 DILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK 125
Query: 126 RLVYNSTADV 135
LV++S+A V
Sbjct: 126 NLVFSSSATV 135
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 66/168 (39%), Gaps = 34/168 (20%)
Query: 87 TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTADVVFDGSHDIHNG 146
V + A+ + DD+YN + G NVV A ++ V R VY TA
Sbjct: 92 AVVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQTA------------- 138
Query: 147 DETLTCCWKFQDLMCDLK-------AQAEALVLFANNID-----GLLTCALRPSNVFGPG 194
C+ + + ++ A + + + N D GL R +NV GP
Sbjct: 139 -----LCYGVKPIQQPVRLDHPRNPANSSYAISKSANEDYLEYSGLDFVTFRLANVVGPR 193
Query: 195 D-TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYVENVAHAHVCAAEAL 241
+ + +P+ G F+ + DF +V+++A A V A + +
Sbjct: 194 NVSGPLPIFFQRLSEGKKCFVTKA---RRDFVFVKDLARATVRAVDGV 238
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 66 EYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDF---------YNCYMIIVQGAKNVV 116
E+H VD+R + KV EG VF + A D+ F YN MI N++
Sbjct: 75 EFHLVDLRVMENCLKVTEGVDHVFNL-AADMGGMGFIQSNHSVIMYNNTMISF----NMI 129
Query: 117 TACRECKVRRLVYNSTA 133
A R ++R Y S+A
Sbjct: 130 EAARINGIKRFFYASSA 146
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 66 EYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDF---------YNCYMIIVQGAKNVV 116
E+H VD+R + KV EG VF + A D+ F YN MI N++
Sbjct: 75 EFHLVDLRVMENCLKVTEGVDHVFNL-AADMGGMGFIQSNHSVIMYNNTMISF----NMI 129
Query: 117 TACRECKVRRLVYNSTA 133
A R ++R Y S+A
Sbjct: 130 EAARINGIKRFFYASSA 146
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 66 EYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDF---------YNCYMIIVQGAKNVV 116
E+H VD+R + KV EG VF + A D+ F YN MI N++
Sbjct: 75 EFHLVDLRVMENCLKVTEGVDHVFNL-AADMGGMGFIQSNHSVIMYNNTMISF----NMI 129
Query: 117 TACRECKVRRLVYNSTA 133
A R ++R Y S+A
Sbjct: 130 EAARINGIKRFFYASSA 146
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 66 EYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDF---------YNCYMIIVQGAKNVV 116
E+H VD+R + KV EG VF + A D+ F YN MI N++
Sbjct: 75 EFHLVDLRVMENCLKVTEGVDHVFNL-AADMGGMGFIQSNHSVIMYNNTMISF----NMI 129
Query: 117 TACRECKVRRLVYNSTA 133
A R ++R Y S+A
Sbjct: 130 EAARINGIKRFFYASSA 146
>pdb|1ZEM|A Chain A, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|B Chain B, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|C Chain C, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|D Chain D, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|E Chain E, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|F Chain F, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|G Chain G, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
pdb|1ZEM|H Chain H, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase
Length = 262
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 11/121 (9%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPS-------ESNSLLPDSLS 61
+ C+V G +G + LRL E G I + + ++L+ + E+ S + D ++
Sbjct: 8 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCD-VT 66
Query: 62 SGRAEYHQVD--VRDISQIKKVLEGAS-TVFYVDATDLNTDDFYNCYMIIVQGAKNVVTA 118
S A VD VRD +I + A + D +DDF I V GA +V+ A
Sbjct: 67 SEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKA 126
Query: 119 C 119
Sbjct: 127 V 127
>pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
pdb|3NV9|B Chain B, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
Length = 487
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 91 VDATDLNTDDFYNCYMIIVQGAKNVVTACRECKVRRLVYNSTAD----VVFDGSHDIHNG 146
++A L D + C M+ + GA + T C RL+ + AD V+FD +HNG
Sbjct: 207 LNALKLVKKDIHECRMVFI-GAGSSNTTCL-----RLIVTAGADPKKIVMFDSKGSLHNG 260
Query: 147 DETLTCCWKF 156
E + +F
Sbjct: 261 REDIKKDTRF 270
>pdb|1YXM|A Chain A, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|B Chain B, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|C Chain C, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|D Chain D, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
Length = 303
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 9 RTCVVLNGRGFVGRSLVLRLLELGKCIVRVTDSTQSLQLDPSESNSLLPDSLSSGRAEYH 68
+ +V G +G+++V LLELG +V + + L+ E + LP + R
Sbjct: 19 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPT-KQARVIPI 77
Query: 69 QVDVRDISQIKKVLEGASTVF 89
Q ++R+ ++ +++ F
Sbjct: 78 QCNIRNEEEVNNLVKSTLDTF 98
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 89/228 (39%), Gaps = 20/228 (8%)
Query: 10 TCVVLNGRGFVGRSLVLRLLELGKC--IVRVTDSTQSLQLDPSESNSLLPD------SLS 61
+V G GF+G + V L+ + I+ T S L+ +S P+ +
Sbjct: 26 NILVTGGAGFIGSNFVHYXLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQ 85
Query: 62 SGRAEYHQVDVRDISQIKKVLEGASTVFYVDATDLNTDDFYNCYMIIVQGAKNVVTACRE 121
+G H + RD+ +V+ + +VD + N FY+ +I G ++ ++
Sbjct: 86 NGELLEHVIKERDV----QVIVNFAAESHVDRSIENPIPFYDTNVI---GTVTLLELVKK 138
Query: 122 CKVRRLVYNSTADVVFDGSHDIHNGDETLTCCWKFQDLMCDLKAQAEALVLFANNIDGLL 181
+LV ST +V +ET KA A+ + L L
Sbjct: 139 YPHIKLVQVSTDEVYGSLGKTGRFTEETPLAP---NSPYSSSKASADXIALAYYKTYQLP 195
Query: 182 TCALRPSNVFGPGD--TQLVPLLVNLAKPGWTKFIIGSGENMSDFTYV 227
R SN +GP +L+PL V A G + G G N+ D+ +V
Sbjct: 196 VIVTRCSNNYGPYQYPEKLIPLXVTNALEGKKLPLYGDGLNVRDWLHV 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,966,640
Number of Sequences: 62578
Number of extensions: 605207
Number of successful extensions: 1178
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1158
Number of HSP's gapped (non-prelim): 36
length of query: 586
length of database: 14,973,337
effective HSP length: 104
effective length of query: 482
effective length of database: 8,465,225
effective search space: 4080238450
effective search space used: 4080238450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)