Query 007867
Match_columns 586
No_of_seqs 141 out of 405
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 12:28:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007867.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007867hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 5.5E-28 1.9E-32 216.8 13.2 119 349-470 4-127 (130)
2 4i1k_A B3 domain-containing tr 99.6 7.8E-15 2.7E-19 134.5 11.2 98 355-460 45-143 (146)
3 1yel_A AT1G16640; CESG, protei 99.4 1E-12 3.5E-17 112.8 10.2 93 356-458 8-100 (104)
4 1na6_A Ecorii, restriction end 91.4 0.23 7.7E-06 52.8 5.9 91 356-446 18-123 (404)
5 3o27_A Putative uncharacterize 62.2 8.3 0.00028 32.0 4.2 40 419-458 23-62 (68)
6 3lqh_A Histone-lysine N-methyl 57.3 4.9 0.00017 38.2 2.4 56 58-120 4-65 (183)
7 2lo3_A SAGA-associated factor 41.3 9.3 0.00032 29.3 1.2 16 77-92 13-28 (44)
8 2vb2_X Copper protein, cation 36.8 23 0.00079 29.8 3.1 23 432-454 59-81 (88)
9 2k75_A Uncharacterized protein 36.2 50 0.0017 28.2 5.2 46 394-460 40-88 (106)
10 2qcp_X Cation efflux system pr 36.1 24 0.00083 29.1 3.1 23 432-454 51-73 (80)
11 3mhs_E SAGA-associated factor 27.1 17 0.00056 32.0 0.6 13 79-91 73-85 (96)
12 1mvf_D MAZE protein, PEMI-like 24.8 54 0.0018 26.5 3.3 28 427-456 19-46 (82)
13 3e0e_A Replication protein A; 24.7 1E+02 0.0035 25.7 5.0 33 394-443 40-72 (97)
14 4dok_A Similarity to chalcone- 24.1 55 0.0019 31.5 3.7 38 424-461 127-164 (208)
15 2l55_A SILB,silver efflux prot 23.2 57 0.0019 27.1 3.1 27 432-458 45-73 (82)
16 2k50_A Replication factor A re 21.3 2.2E+02 0.0074 23.8 6.5 50 394-458 45-98 (115)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.95 E-value=5.5e-28 Score=216.80 Aligned_cols=119 Identities=38% Similarity=0.717 Sum_probs=100.6
Q ss_pred CCCCCcccceEEEecccccCCCCCcEEeehhhhcccCCCCCC---CCCceEEEEeCCCCeEEEEEEEcCCCCCcceecc-
Q 007867 349 GDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLE- 424 (586)
Q Consensus 349 ~d~ns~~~~LF~KvLT~SDVg~lgRLVIPKk~AEa~FP~Ls~---~~G~~L~v~D~~GK~W~FRfsyw~NN~SR~YVL~- 424 (586)
+..+.+..++|.|+||+|||++.+||+||+++|++|||.++. .+++.|.++|.+|++|+|+|+|| +.+++|+|+
T Consensus 4 ~~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~--~~~~~~~Lt~ 81 (130)
T 1wid_A 4 GSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW--NSSQSYVLTK 81 (130)
T ss_dssp ----CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEE--TTTTEEEEES
T ss_pred CCCCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEE--CCCCceEEcC
Confidence 445567788999999999999889999999999999999874 57899999999999999999999 567889986
Q ss_pred CchhhhhccCCCCCCEEEEEEec-CCCeEEEEEEeCCCCCCcccccc
Q 007867 425 GVTPCIQNMQLQAGDIVTFSRLE-PEGKLVMGFRKASSASASDQDNE 470 (586)
Q Consensus 425 GWs~FVRsK~LqaGDtVvF~R~e-p~GkL~IGvRRa~~~~~s~q~~~ 470 (586)
||..||++|+|++||+|+|++.+ .+++|+|++||+.... ++|.+.
T Consensus 82 GW~~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~-~~~~~~ 127 (130)
T 1wid_A 82 GWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD-LDASGP 127 (130)
T ss_dssp SHHHHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS-SCC---
T ss_pred ChHHHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC-ccccCC
Confidence 99999999999999999999986 3468999999998654 455443
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.57 E-value=7.8e-15 Score=134.50 Aligned_cols=98 Identities=24% Similarity=0.290 Sum_probs=82.5
Q ss_pred ccceEEEecccccCCCCCcEEeehhhhcccCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccC
Q 007867 355 ITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQ 434 (586)
Q Consensus 355 ~~~LF~KvLT~SDVg~lgRLVIPKk~AEa~FP~Ls~~~G~~L~v~D~~GK~W~FRfsyw~NN~SR~YVL~GWs~FVRsK~ 434 (586)
-.+.|.|+|++|||.+..+|.||++.++.|||.. ...+.++|. |+.|.+++.|+. +++++..||..||++++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~----~~~i~L~~~-gk~W~v~~~~~~---~~~~ls~GW~~Fv~dn~ 116 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGI----SGFIKVQLA-EKQWPVRCLYKA---GRAKFSQGWYEFTLENN 116 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTC----CSEEEEEET-TEEEEEEEEEET---TEEEECTTHHHHHHHTT
T ss_pred CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCC----CeEEEEEEC-CcEEEEEEEEeC---CcEEECCchHHHHHHcC
Confidence 3579999999999997678999999999999973 468888998 699999999983 35555579999999999
Q ss_pred CCCCCEEEEEEecCCC-eEEEEEEeCC
Q 007867 435 LQAGDIVTFSRLEPEG-KLVMGFRKAS 460 (586)
Q Consensus 435 LqaGDtVvF~R~ep~G-kL~IGvRRa~ 460 (586)
|++||+|+|...+... .|.|.+-|+.
T Consensus 117 L~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 117 LGEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp CCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred CCCCCEEEEEEecCCceEEEEEEEecc
Confidence 9999999999986433 5777777754
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.40 E-value=1e-12 Score=112.83 Aligned_cols=93 Identities=14% Similarity=0.282 Sum_probs=75.3
Q ss_pred cceEEEecccccCCCCCcEEeehhhhcccCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccCC
Q 007867 356 TPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQL 435 (586)
Q Consensus 356 ~~LF~KvLT~SDVg~lgRLVIPKk~AEa~FP~Ls~~~G~~L~v~D~~GK~W~FRfsyw~NN~SR~YVL~GWs~FVRsK~L 435 (586)
.+.|.|+|+++|. ..+|.||++.++.+.+.+ +..+.++|..|+.|.+++..+. .+.++..||..||++++|
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~----~~~v~L~~~~G~~W~v~~~~~~---~~~~l~~GW~~Fv~~~~L 78 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF----PITVDLLDYSGRSWTVRMKKRG---EKVFLTVGWENFVKDNNL 78 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCC----CSEEEEEETTSCEEEEEEEEET---TEEEECTTHHHHHHHHTC
T ss_pred CCCEEEEECCCCc--cceEECCHHHHHhcCccC----CCEEEEECCCCCEEEEEEEEEC---CcEEEccChHHHHHHcCC
Confidence 4689999999994 369999999987766543 4689999999999999999872 344455699999999999
Q ss_pred CCCCEEEEEEecCCCeEEEEEEe
Q 007867 436 QAGDIVTFSRLEPEGKLVMGFRK 458 (586)
Q Consensus 436 qaGDtVvF~R~ep~GkL~IGvRR 458 (586)
++||.|+|.... +..+.|-+=+
T Consensus 79 ~~GD~lvF~~~~-~~~f~V~If~ 100 (104)
T 1yel_A 79 EDGKYLQFIYDR-DRTFYVIIYG 100 (104)
T ss_dssp CTTCEEEEEECS-SSEEEEEEEC
T ss_pred CCCCEEEEEEcC-CCeEEEEEEC
Confidence 999999998864 6667666544
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=91.38 E-value=0.23 Score=52.79 Aligned_cols=91 Identities=16% Similarity=0.167 Sum_probs=64.9
Q ss_pred cceEEEecccccCCC----CCcEEeehhhhcccCCCCCCC---C-CceEE--EEeCCCCeEEEEEEEcCC----CCCcce
Q 007867 356 TPLFEKMLSASDAGR----IGRLVLPKKCAEAYFPPISQP---E-GLPLK--VQDSKGKEWIFQFRFWPN----NNSRMY 421 (586)
Q Consensus 356 ~~LF~KvLT~SDVg~----lgRLVIPKk~AEa~FP~Ls~~---~-G~~L~--v~D~~GK~W~FRfsyw~N----N~SR~Y 421 (586)
...|.|.|++.|++. ...+.+||...+.+||.|+.+ + -+.+. +-|...-.+.++++|+-| ..+..|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence 478999999999995 368999997688999988722 2 22333 334434455999999821 244468
Q ss_pred eccCch-hhhhccCCCCCCEEEEEEe
Q 007867 422 VLEGVT-PCIQNMQLQAGDIVTFSRL 446 (586)
Q Consensus 422 VL~GWs-~FVRsK~LqaGDtVvF~R~ 446 (586)
-|+.|. .+.=.....+||.++|-+.
T Consensus 98 RLt~~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 98 RITRWGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEECCCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEeecCCCCcccccCCCCCEEEEEEe
Confidence 888875 4555678899999988865
No 5
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=62.22 E-value=8.3 Score=32.00 Aligned_cols=40 Identities=10% Similarity=0.320 Sum_probs=33.8
Q ss_pred cceeccCchhhhhccCCCCCCEEEEEEecCCCeEEEEEEe
Q 007867 419 RMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRK 458 (586)
Q Consensus 419 R~YVL~GWs~FVRsK~LqaGDtVvF~R~ep~GkL~IGvRR 458 (586)
..|.++==.+++++.+++.||.+...-++.+|++++..+|
T Consensus 23 etyYInIPaeI~kaLgIk~gD~fel~ve~kdgeIvLcykR 62 (68)
T 3o27_A 23 TTFYLLIPKDIAEALDIKPDDTFILNMEQKDGDIVLSYKR 62 (68)
T ss_dssp CCEEEEECHHHHHHTTCCTTCCEEEEEEEETTEEEEEEEE
T ss_pred eEEEEeCcHHHHHHhCCCCCCEEEEEEecCCCeEEEEehh
Confidence 3455555579999999999999999887779999999998
No 6
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=57.29 E-value=4.9 Score=38.24 Aligned_cols=56 Identities=20% Similarity=0.605 Sum_probs=44.1
Q ss_pred hh-ccccccccccccccccCCCCCccccccCCCccccchhhh-hhhhhhhh----cCCcceeccccccc
Q 007867 58 LC-VYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITS-VHAFTLLD----AGGIECMTCARKNV 120 (586)
Q Consensus 58 LC-~CgsayE~~~FCe~FH~~~sGWR~C~~C~KrlHCGCI~S-~~~~~lLD----~GGv~C~~Car~s~ 120 (586)
.| .|+..|..+.| ++-|-.|..|..-.|--|+-- ...+++++ ...-.|..|.++..
T Consensus 4 ~CpiC~k~Y~~~~~-------~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 4 FCPLCDKCYDDDDY-------ESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp BCTTTCCBCTTCCT-------TCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCCCCcCccCCccc-------CCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 58 78888888765 577999999999999999843 34567774 34779999998764
No 7
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=41.35 E-value=9.3 Score=29.31 Aligned_cols=16 Identities=38% Similarity=0.910 Sum_probs=13.2
Q ss_pred CCCCccccccCCCccc
Q 007867 77 NASGWRCCESCGKRVH 92 (586)
Q Consensus 77 ~~sGWR~C~~C~KrlH 92 (586)
...-+|.|++|||+|-
T Consensus 13 ~~~~YRvC~~CgkPi~ 28 (44)
T 2lo3_A 13 KPIQYRVCEKCGKPLA 28 (44)
T ss_dssp CCCCEEECTTTCCEEE
T ss_pred ccccchhhcccCCcch
Confidence 4567899999999873
No 8
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=36.79 E-value=23 Score=29.83 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=18.0
Q ss_pred ccCCCCCCEEEEEEecCCCeEEE
Q 007867 432 NMQLQAGDIVTFSRLEPEGKLVM 454 (586)
Q Consensus 432 sK~LqaGDtVvF~R~ep~GkL~I 454 (586)
-.+|++||.|.|.-.+.+|.|.|
T Consensus 59 l~~lk~Gd~V~F~~~~~~~~~~i 81 (88)
T 2vb2_X 59 MSEIKTGDKVAFNFVQQGNLSLL 81 (88)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEE
Confidence 47899999999977665666654
No 9
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=36.21 E-value=50 Score=28.19 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=33.5
Q ss_pred ceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccCCCCCCEEEEEEe---cCCCeEEEEEEeCC
Q 007867 394 LPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRL---EPEGKLVMGFRKAS 460 (586)
Q Consensus 394 ~~L~v~D~~GK~W~FRfsyw~NN~SR~YVL~GWs~FVRsK~LqaGDtVvF~R~---ep~GkL~IGvRRa~ 460 (586)
..+.+.|.+| +.+++.| +.. |++||+|.+... .-+|++.+.+-|..
T Consensus 40 ~~~~l~DeTG---~I~~tlW--~~~----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~ 88 (106)
T 2k75_A 40 YQGYIEDDTA---RIRISSF--GKQ----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSS 88 (106)
T ss_dssp EEEEEECSSC---EEEEEEE--SSC----------------CCTTEEEEEEEEEEEEETTEEEEEECTTS
T ss_pred EEEEEEcCCC---eEEEEEE--cCc----------------cCCCCEEEEEeeEEeEECCEEEEEECCcE
Confidence 4788999999 6899999 222 999999998732 24676666665544
No 10
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=36.14 E-value=24 Score=29.13 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=17.8
Q ss_pred ccCCCCCCEEEEEEecCCCeEEE
Q 007867 432 NMQLQAGDIVTFSRLEPEGKLVM 454 (586)
Q Consensus 432 sK~LqaGDtVvF~R~ep~GkL~I 454 (586)
-.+|++||.|.|.-.+.+|.|.|
T Consensus 51 l~~lk~Gd~V~F~~~~~~~~~~i 73 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQQGNLSLL 73 (80)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEE
Confidence 57899999999877665666654
No 11
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=27.08 E-value=17 Score=32.01 Aligned_cols=13 Identities=46% Similarity=1.112 Sum_probs=11.7
Q ss_pred CCccccccCCCcc
Q 007867 79 SGWRCCESCGKRV 91 (586)
Q Consensus 79 sGWR~C~~C~Krl 91 (586)
.-.|-|+.|||+|
T Consensus 73 ~~YRvCn~CGkPI 85 (96)
T 3mhs_E 73 IQYRVCEKCGKPL 85 (96)
T ss_dssp CCCEEETTTCCEE
T ss_pred ccchhhhccCCce
Confidence 5689999999997
No 12
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=24.81 E-value=54 Score=26.46 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=22.5
Q ss_pred hhhhhccCCCCCCEEEEEEecCCCeEEEEE
Q 007867 427 TPCIQNMQLQAGDIVTFSRLEPEGKLVMGF 456 (586)
Q Consensus 427 s~FVRsK~LqaGDtVvF~R~ep~GkL~IGv 456 (586)
.+++++.+|.+||.|.|... +|.++|.-
T Consensus 19 k~~~~~lgl~~gd~v~i~~~--~~~iii~p 46 (82)
T 1mvf_D 19 ATLMQALNLNIDDEVKIDLV--DGKLIIEP 46 (82)
T ss_dssp HHHHHHTTCCTTCBEEEEEE--TTEEEEEE
T ss_pred HHHHHHcCCCCCCEEEEEEE--CCEEEEEE
Confidence 47899999999999999874 66777643
No 13
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=24.73 E-value=1e+02 Score=25.73 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=24.9
Q ss_pred ceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccCCCCCCEEEE
Q 007867 394 LPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTF 443 (586)
Q Consensus 394 ~~L~v~D~~GK~W~FRfsyw~NN~SR~YVL~GWs~FVRsK~LqaGDtVvF 443 (586)
..+.+.|.+| +.+++.| .+.+.. .|++||+|.|
T Consensus 40 ~~~~l~DeTG---~I~~tlW-------------~~~~~~-~i~~Gdvv~i 72 (97)
T 3e0e_A 40 KSLFLKDDTG---SIRGTLW-------------NELADF-EVKKGDIAEV 72 (97)
T ss_dssp EEEEEEETTE---EEEEEEE-------------GGGGGC-CCCTTCEEEE
T ss_pred EEEEEECCCC---cEEEEEE-------------CCcccc-ccCCCCEEEE
Confidence 4688999998 6777777 233333 8999999999
No 14
>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}
Probab=24.09 E-value=55 Score=31.55 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=30.9
Q ss_pred cCchhhhhccCCCCCCEEEEEEecCCCeEEEEEEeCCC
Q 007867 424 EGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASS 461 (586)
Q Consensus 424 ~GWs~FVRsK~LqaGDtVvF~R~ep~GkL~IGvRRa~~ 461 (586)
.....+.++..|+.||.|.|.+..+.|.|.|.+.+...
T Consensus 127 ~~f~~~F~~~~~~~G~~I~~~~~p~~G~L~i~~s~~G~ 164 (208)
T 4dok_A 127 EKVVGFFQSKYFKANSVITYHFSAKDGICEIGFETEGK 164 (208)
T ss_dssp HHHHHHHHTCEECTTCEEEEEECSSSCCEEEEEECTTS
T ss_pred HHHHHHhccCCCCCCCEEEEEEeCCCCeEEEEEEeCCE
Confidence 45667788889999999999998656999999886543
No 15
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=23.23 E-value=57 Score=27.14 Aligned_cols=27 Identities=26% Similarity=0.178 Sum_probs=18.7
Q ss_pred ccCCCCCCEEEEEEecCCC-eEEE-EEEe
Q 007867 432 NMQLQAGDIVTFSRLEPEG-KLVM-GFRK 458 (586)
Q Consensus 432 sK~LqaGDtVvF~R~ep~G-kL~I-GvRR 458 (586)
-.+|++||.|.|.-...+| .|.| .+++
T Consensus 45 l~~lk~Gd~V~F~~~~~~~g~~~it~i~~ 73 (82)
T 2l55_A 45 PQGLKAGDRVAFSFRLDPHGMATLVTVAP 73 (82)
T ss_dssp CSSCSTTCEEEEEEEEETTTEEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEECCCCeEEEEEEEe
Confidence 4689999999987655444 6654 4444
No 16
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=21.33 E-value=2.2e+02 Score=23.79 Aligned_cols=50 Identities=14% Similarity=0.311 Sum_probs=33.4
Q ss_pred ceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccCCCCCCEEEEEEec----CCCeEEEEEEe
Q 007867 394 LPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLE----PEGKLVMGFRK 458 (586)
Q Consensus 394 ~~L~v~D~~GK~W~FRfsyw~NN~SR~YVL~GWs~FVRsK~LqaGDtVvF~R~e----p~GkL~IGvRR 458 (586)
..+.+.|.+| ..++++| +... | ....|++||+|.|.-.. -+|++-+.+-+
T Consensus 45 ~~~~l~D~TG---~I~~t~w--~~~~------~----~~~~l~~G~vv~i~g~~v~~~f~g~~qL~~~~ 98 (115)
T 2k50_A 45 ANVIIADDTG---ELRAVFW--TENI------K----LLKKFREGDVIRIKDVNIRGGFGGRKEAHLMP 98 (115)
T ss_dssp EEEEEEETTE---EEEEEEE--TTGG------G----GGGTCCTTSEEEEEEEEECCCSSSSCEEEECT
T ss_pred EEEEEEeCCC---eEEEEEe--Cchh------h----hhhcCCCCCEEEEEeeEEccccCCeEEEEECC
Confidence 6789999999 8889999 2221 1 12469999999987643 34544444433
Done!