BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007868
(586 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M347|TRP6_ARATH Telomere repeat-binding protein 6 OS=Arabidopsis thaliana GN=TRP6
PE=1 SV=1
Length = 400
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 521 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK 569
V+R+ R +T+SEV LV+ V + G GRW ++K AF ++RT VDLK
Sbjct: 310 VQRRIRRPFTVSEVEALVQAVERLGTGRWRDVKSHAFNHVNHRTYVDLK 358
>sp|Q9LL45|TBP1_ORYSJ Telomere-binding protein 1 OS=Oryza sativa subsp. japonica GN=TBP1
PE=1 SV=2
Length = 633
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 522 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYII 575
+R+ R +T++EV LVE V G GRW ++K AF + +RT VDLK W ++
Sbjct: 530 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLV 584
>sp|Q6R0E3|TRP5_ARATH Telomere repeat-binding protein 5 OS=Arabidopsis thaliana GN=TRP5
PE=1 SV=2
Length = 630
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 521 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYII 575
+R+ R ++++EV LV+ V + G GRW ++K AF + +RT VDLK W ++
Sbjct: 523 AQRRIRRPFSVAEVEALVQAVERLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLV 578
>sp|Q9SNB9|TRP2_ARATH Telomere repeat-binding protein 2 OS=Arabidopsis thaliana GN=TRP2
PE=1 SV=1
Length = 553
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 520 GVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYII 575
+R+ R ++++EV LV+ V K G GRW ++K AF +RT VDLK W ++
Sbjct: 447 AAQRRIRRPFSVTEVEALVQAVEKLGTGRWRDVKVRAFEDADHRTYVDLKDKWKTLV 503
>sp|Q9FFY9|TRP4_ARATH Telomere repeat-binding protein 4 OS=Arabidopsis thaliana GN=TRP4
PE=1 SV=1
Length = 640
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 522 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYII 575
+R+ R ++++EV LV V + G GRW ++K +F + S+RT VDLK W ++
Sbjct: 531 QRRTRRPFSVTEVEALVSAVEEVGTGRWRDVKLRSFENASHRTYVDLKDKWKTLV 585
>sp|Q9C7B1|TRP3_ARATH Telomere repeat-binding protein 3 OS=Arabidopsis thaliana GN=TRP3
PE=1 SV=1
Length = 619
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 522 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYII 575
+R+ R ++++EV LV+ V + G GRW ++K AF +RT VDLK W ++
Sbjct: 505 QRRTRRPFSVTEVEALVQAVEELGTGRWRDVKLRAFEDADHRTYVDLKDKWKTLV 559
>sp|Q8L7L8|TRP1_ARATH Telomere repeat-binding protein 1 OS=Arabidopsis thaliana GN=TRP1
PE=1 SV=2
Length = 578
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 529 WTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYII 575
++++EV LV+ V K G GRW ++K AF +RT VDLK W ++
Sbjct: 471 FSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLV 518
>sp|P54274|TERF1_HUMAN Telomeric repeat-binding factor 1 OS=Homo sapiens GN=TERF1 PE=1
SV=3
Length = 439
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 522 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK 569
R + +AW E L GV KYG G WS+I L ++ RTSV LK
Sbjct: 376 RARKRQAWLWEEDKNLRSGVRKYGEGNWSKI--LLHYKFNNRTSVMLK 421
>sp|O55036|TERF1_CRIGR Telomeric repeat-binding factor 1 (Fragment) OS=Cricetulus griseus
GN=TERF1 PE=2 SV=1
Length = 438
Score = 37.4 bits (85), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 522 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK 569
R + +AW E L GV KYG G WS+I L ++ RTSV LK
Sbjct: 376 RARKRQAWLWEEDKNLRSGVRKYGEGNWSKI--LLHYKFNNRTSVMLK 421
>sp|Q132J9|DCUP_RHOPS Uroporphyrinogen decarboxylase OS=Rhodopseudomonas palustris
(strain BisB5) GN=hemE PE=3 SV=1
Length = 348
Score = 37.0 bits (84), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 95 PKLE--SSEGLSNSENAEADAGKLNTHLESIEEMLTKAKQEESHLLACGSPDHSSTYVLV 152
P+L+ +S L + N D GKL E++ + ++ E + + CG+P +TY++
Sbjct: 98 PRLDPLNSPDLVGTLNGAIDLGKLEPVFEALRIVRSELAPETTLIGFCGAPFTVATYMVA 157
Query: 153 DGQCSDQH 160
SDQH
Sbjct: 158 GQGTSDQH 165
>sp|P70371|TERF1_MOUSE Telomeric repeat-binding factor 1 OS=Mus musculus GN=Terf1 PE=1
SV=1
Length = 421
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 518 KGGVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK 569
K G R++ W ++K GV KYG G W++I L+ ++ RTSV LK
Sbjct: 361 KSGRRKRQTWLWEEDRILKC--GVKKYGEGNWAKI--LSHYKFNNRTSVMLK 408
>sp|Q9PU53|TERF2_CHICK Telomeric repeat-binding factor 2 OS=Gallus gallus GN=TERF2 PE=1
SV=2
Length = 718
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 529 WTLSEVMKLVEGVSKYGAGRWSEI-KRLAFASYSYRTSVDLK-VWTYIIVLGLA 580
WT+ E + +GV KYG GRW I ++ F + RTSV +K + + LG+A
Sbjct: 668 WTVQESEWIKDGVRKYGEGRWKTISEKYPFQN---RTSVQIKDRYRTMKKLGIA 718
>sp|F4I7L1|TRB4_ARATH Telomere repeat-binding factor 4 OS=Arabidopsis thaliana
GN=At1g17520 PE=2 SV=2
Length = 296
Score = 33.5 bits (75), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 529 WTLSEVMKLVEGVSKYGAGRWSEIKR---LAFASYSYRTSVDLK 569
WT E L+ GV K+G G+W I R LA S R+++DLK
Sbjct: 8 WTAEEEEALLAGVRKHGPGKWKNILRDPELA-EQLSSRSNIDLK 50
>sp|Q58277|AMTAB_METJA Probable threonylcarbamoyladenosine tRNA methylthiotransferase
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0867
PE=3 SV=1
Length = 427
Score = 33.1 bits (74), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 377 KEHGGKSIASVKNLGLGLMSSRSNTRPVRIASSNRITLRLDSLGGSGVQIPYVSRVRRSR 436
K+HG + + +++ + ++ NT VR+ + NR+ R++ L G ++ + ++
Sbjct: 36 KKHGFEVVNNLEEADIAII----NTCVVRLETENRMIYRINELKNLGKEVVVAGCLPKAL 91
Query: 437 PRKNVKALMEFHPNGIGMAAKLVKEAVDVHSSEPNRE 473
K VK + +P A +++K V+ H P E
Sbjct: 92 KNK-VKGFLHIYPREAHKAGEILKNYVEKHYRMPYIE 127
>sp|Q55GK3|MYBM_DICDI Myb-like protein M OS=Dictyostelium discoideum GN=mybM PE=3 SV=1
Length = 669
Score = 32.7 bits (73), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 14/103 (13%)
Query: 454 MAAKLVKEAVDVHSSEPNRESGGIVLKASSAPEQIQQQGQNMEPKNKDPSVYTPDDNPAT 513
M L+ + ++ P S I S ++ ++ PK DD P+
Sbjct: 1 MTESLIMNNISKYNISPQFNSDRIYNDPSLMDDEFSDNEYDLSPK---------DDVPSP 51
Query: 514 VR----AVKGGVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEI 552
+ ++ G+RR ++ WT E KL + VS YG +W I
Sbjct: 52 SKRGRGQIQNGIRRSPNK-WTEEEDQKLFQLVSIYGEKKWKRI 93
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 215,618,647
Number of Sequences: 539616
Number of extensions: 9145288
Number of successful extensions: 21562
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 21437
Number of HSP's gapped (non-prelim): 139
length of query: 586
length of database: 191,569,459
effective HSP length: 123
effective length of query: 463
effective length of database: 125,196,691
effective search space: 57966067933
effective search space used: 57966067933
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)