Query 007868
Match_columns 586
No_of_seqs 128 out of 280
Neff 3.3
Searched_HMMs 46136
Date Thu Mar 28 16:25:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00249 Myb_DNA-binding: Myb- 98.7 1.3E-08 2.7E-13 77.4 3.8 47 526-575 1-48 (48)
2 smart00717 SANT SANT SWI3, AD 98.4 3.8E-07 8.2E-12 65.8 4.3 46 527-576 2-48 (49)
3 cd00167 SANT 'SWI3, ADA2, N-Co 98.3 1E-06 2.3E-11 62.8 4.1 44 528-575 1-45 (45)
4 PF13921 Myb_DNA-bind_6: Myb-l 97.8 1.4E-05 3.1E-10 62.5 3.4 43 529-576 1-44 (60)
5 PLN03212 Transcription repress 97.6 0.00011 2.3E-09 74.7 6.0 52 523-577 22-74 (249)
6 TIGR01557 myb_SHAQKYF myb-like 97.4 0.00017 3.7E-09 58.4 4.4 44 524-569 1-47 (57)
7 PLN03091 hypothetical protein; 97.2 0.00035 7.5E-09 75.9 4.8 51 524-577 12-63 (459)
8 PLN03212 Transcription repress 97.2 0.00031 6.8E-09 71.4 4.2 49 526-579 78-127 (249)
9 PLN03091 hypothetical protein; 97.0 0.00077 1.7E-08 73.3 4.6 50 526-580 67-117 (459)
10 PF13837 Myb_DNA-bind_4: Myb/S 95.9 0.0066 1.4E-07 50.3 2.8 55 526-580 1-69 (90)
11 KOG0048 Transcription factor, 95.8 0.0092 2E-07 59.3 4.2 49 526-577 9-58 (238)
12 KOG0457 Histone acetyltransfer 95.6 0.0099 2.1E-07 64.7 3.7 44 528-575 74-118 (438)
13 PF13873 Myb_DNA-bind_5: Myb/S 95.3 0.024 5.3E-07 46.6 4.3 54 526-579 2-73 (78)
14 KOG0048 Transcription factor, 94.1 0.056 1.2E-06 53.8 4.2 49 526-579 62-111 (238)
15 PF13325 MCRS_N: N-terminal re 92.3 0.1 2.2E-06 52.1 2.8 56 526-581 73-132 (199)
16 KOG0049 Transcription factor, 92.0 0.1 2.2E-06 59.8 2.8 50 523-576 409-459 (939)
17 PF09111 SLIDE: SLIDE; InterP 91.9 0.11 2.4E-06 47.8 2.3 53 526-578 49-113 (118)
18 KOG0049 Transcription factor, 87.7 0.51 1.1E-05 54.3 3.8 51 524-578 358-409 (939)
19 PLN03142 Probable chromatin-re 87.5 0.57 1.2E-05 56.3 4.3 53 526-578 926-987 (1033)
20 KOG0051 RNA polymerase I termi 87.4 0.49 1.1E-05 53.9 3.4 49 525-579 383-432 (607)
21 KOG4282 Transcription factor G 82.4 1.6 3.5E-05 45.4 4.3 54 526-579 54-117 (345)
22 COG5114 Histone acetyltransfer 81.0 1.3 2.8E-05 47.7 3.0 43 528-574 65-108 (432)
23 PF08074 CHDCT2: CHDCT2 (NUC03 78.8 1.1 2.5E-05 44.0 1.7 31 526-556 3-33 (173)
24 PF11149 DUF2924: Protein of u 75.2 2.1 4.5E-05 40.8 2.3 39 233-271 7-45 (136)
25 KOG0384 Chromodomain-helicase 72.9 2.1 4.5E-05 52.5 2.1 38 525-562 1132-1169(1373)
26 KOG1279 Chromatin remodeling f 69.2 4.5 9.8E-05 45.6 3.6 44 526-574 253-297 (506)
27 COG5259 RSC8 RSC chromatin rem 67.8 4.1 8.9E-05 45.7 2.8 29 526-555 279-307 (531)
28 KOG0050 mRNA splicing protein 61.9 4.5 9.7E-05 45.9 1.8 42 527-572 8-50 (617)
29 PF12776 Myb_DNA-bind_3: Myb/S 51.2 15 0.00033 30.8 2.9 50 528-577 1-64 (96)
30 KOG0051 RNA polymerase I termi 46.9 22 0.00048 41.1 4.1 49 524-577 434-509 (607)
31 TIGR01624 LRP1_Cterm LRP1 C-te 40.7 23 0.00049 29.0 2.2 17 30-46 3-19 (50)
32 PF04504 DUF573: Protein of un 36.0 42 0.00091 30.0 3.4 53 525-577 3-64 (98)
33 KOG2656 DNA methyltransferase 30.3 22 0.00047 39.5 0.8 49 527-576 131-182 (445)
34 KOG4468 Polycomb-group transcr 28.7 98 0.0021 36.4 5.5 47 526-573 88-135 (782)
35 COG5118 BDP1 Transcription ini 28.0 75 0.0016 35.5 4.3 52 521-577 360-412 (507)
36 PF02178 AT_hook: AT hook moti 26.1 28 0.0006 21.5 0.4 9 433-441 3-11 (13)
37 PF01527 HTH_Tnp_1: Transposas 24.2 80 0.0017 25.3 2.9 19 523-541 1-19 (76)
38 COG5147 REB1 Myb superfamily p 23.0 27 0.00059 39.7 -0.0 50 525-580 290-340 (512)
39 KOG4329 DNA-binding protein [G 20.8 99 0.0021 34.5 3.5 50 523-576 274-323 (445)
40 COG5147 REB1 Myb superfamily p 20.7 80 0.0017 36.1 2.9 44 526-573 20-64 (512)
No 1
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.70 E-value=1.3e-08 Score=77.41 Aligned_cols=47 Identities=30% Similarity=0.521 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYII 575 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~ 575 (586)
|.+||.+|.+.|+++|++||.++|+.|..... .+||..+++ +|+++.
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMP---GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence 46899999999999999999999999998843 599999999 999974
No 2
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.39 E-value=3.8e-07 Score=65.81 Aligned_cols=46 Identities=30% Similarity=0.556 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhh
Q 007868 527 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIV 576 (586)
Q Consensus 527 r~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K 576 (586)
..||.+|.+.|+.+|.+||.++|..|... +..||..+++ +|+++.+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~----~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKE----LPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHH----cCCCCHHHHHHHHHHHcC
Confidence 57999999999999999998899999877 3499999999 9999875
No 3
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.27 E-value=1e-06 Score=62.84 Aligned_cols=44 Identities=32% Similarity=0.622 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhh
Q 007868 528 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYII 575 (586)
Q Consensus 528 ~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~ 575 (586)
.||.+|.+.|+.++.+||.++|..|... +..||..+++ +|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~----~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKE----LPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhH----cCCCCHHHHHHHHHHhC
Confidence 5999999999999999999999999977 3469999999 999874
No 4
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.84 E-value=1.4e-05 Score=62.52 Aligned_cols=43 Identities=33% Similarity=0.554 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhh
Q 007868 529 WTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIV 576 (586)
Q Consensus 529 WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K 576 (586)
||.+|.+.|+.+|.+|| .+|+.|-.. +.+||.-+++ ||++.++
T Consensus 1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~----l~~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG-NDWKKIAEH----LGNRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHHT-S-HHHHHHH----STTS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHC-cCHHHHHHH----HCcCCHHHHHHHHHHHCc
Confidence 99999999999999999 499999876 4479999999 9999443
No 5
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.58 E-value=0.00011 Score=74.70 Aligned_cols=52 Identities=25% Similarity=0.406 Sum_probs=44.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhh
Q 007868 523 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVL 577 (586)
Q Consensus 523 RK~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~ 577 (586)
.-++.+||.||-+.|++.|++||.++|+.|.+.. -.+||.-+.. +|.|.+.-
T Consensus 22 glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~---g~gRT~KQCReRW~N~L~P 74 (249)
T PLN03212 22 GMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRA---GLLRCGKSCRLRWMNYLRP 74 (249)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhh---hcCCCcchHHHHHHHhhch
Confidence 3446689999999999999999999999997652 2579999999 99998753
No 6
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.45 E-value=0.00017 Score=58.39 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=35.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCh---HHHHhhhccCCCCCCcccch
Q 007868 524 KHHRAWTLSEVMKLVEGVSKYGAGRW---SEIKRLAFASYSYRTSVDLK 569 (586)
Q Consensus 524 K~rr~WT~eEveaLveGV~kyGvG~W---k~Il~~~~~~f~~RT~VDLK 569 (586)
|++..||+||-..+++||+.||.|+| +.|+..+. ....|...++
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~--~~~lT~~qV~ 47 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMV--VDGLTRDQVA 47 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcC--CCCCCHHHHH
Confidence 46778999999999999999999999 99997743 2222666554
No 7
>PLN03091 hypothetical protein; Provisional
Probab=97.21 E-value=0.00035 Score=75.86 Aligned_cols=51 Identities=25% Similarity=0.461 Sum_probs=43.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhh
Q 007868 524 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVL 577 (586)
Q Consensus 524 K~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~ 577 (586)
.++.+||.||-+.|++.|++||.++|+.|-+.. ..+||+-+.+ +|.|.+.-
T Consensus 12 lrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~---g~gRT~KQCRERW~NyLdP 63 (459)
T PLN03091 12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQA---GLQRCGKSCRLRWINYLRP 63 (459)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhh---ccCcCcchHhHHHHhccCC
Confidence 334679999999999999999999999997652 2489999999 99997753
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.20 E-value=0.00031 Score=71.41 Aligned_cols=49 Identities=24% Similarity=0.261 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLGL 579 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s~ 579 (586)
+.+||.||.+.|++.+++||- +|+.|-.. +.+||..++| +|.++++...
T Consensus 78 kgpWT~EED~lLlel~~~~Gn-KWs~IAk~----LpGRTDnqIKNRWns~LrK~l 127 (249)
T PLN03212 78 RGGITSDEEDLILRLHRLLGN-RWSLIAGR----IPGRTDNEIKNYWNTHLRKKL 127 (249)
T ss_pred cCCCChHHHHHHHHHHHhccc-cHHHHHhh----cCCCCHHHHHHHHHHHHhHHH
Confidence 458999999999999999995 99999865 5799999999 9999887653
No 9
>PLN03091 hypothetical protein; Provisional
Probab=96.96 E-value=0.00077 Score=73.26 Aligned_cols=50 Identities=24% Similarity=0.399 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhhhhc
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLGLA 580 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s~~ 580 (586)
+.+||.||.+.|++-+++||. +|+.|-.. +.+||..++| +|+.++|....
T Consensus 67 KgpWT~EED~lLLeL~k~~Gn-KWskIAk~----LPGRTDnqIKNRWnslLKKklr 117 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVLGN-RWSQIAAQ----LPGRTDNEIKNLWNSCLKKKLR 117 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCc-chHHHHHh----cCCCCHHHHHHHHHHHHHHHHH
Confidence 458999999999999999997 99999965 5799999999 99998886544
No 10
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.86 E-value=0.0066 Score=50.32 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHhh------cCC-----C--ChHHHHhhhccCCCCCCcccch-hhhhhhhhhhc
Q 007868 526 HRAWTLSEVMKLVEGVSK------YGA-----G--RWSEIKRLAFASYSYRTSVDLK-VWTYIIVLGLA 580 (586)
Q Consensus 526 rr~WT~eEveaLveGV~k------yGv-----G--~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s~~ 580 (586)
|..||.+|+.+|++-+.. |+- + -|..|.......--.||+.+++ ||.||.+....
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~ 69 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKK 69 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 468999999999998877 221 1 5999976653222379999999 99999985443
No 11
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=95.83 E-value=0.0092 Score=59.34 Aligned_cols=49 Identities=18% Similarity=0.356 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVL 577 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~ 577 (586)
+-+||.||-+.|++=|++||.|+|..|-++.. + .|+.=..- +|-|.++-
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~g--l-~R~GKSCRlRW~NyLrP 58 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAG--L-RRCGKSCRLRWTNYLRP 58 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcC--C-CccchHHHHHhhcccCC
Confidence 57899999999999999999999999988743 2 89999999 99998763
No 12
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.61 E-value=0.0099 Score=64.66 Aligned_cols=44 Identities=27% Similarity=0.489 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhh
Q 007868 528 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYII 575 (586)
Q Consensus 528 ~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~ 575 (586)
-||.+|+-.|++|+..||.|||..|-+.-. .||.-+.| -|.+..
T Consensus 74 ~WtadEEilLLea~~t~G~GNW~dIA~hIG----tKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 74 SWTADEEILLLEAAETYGFGNWQDIADHIG----TKTKEECKEHYLKHF 118 (438)
T ss_pred CCChHHHHHHHHHHHHhCCCcHHHHHHHHc----ccchHHHHHHHHHHH
Confidence 599999999999999999999999998743 68888888 666654
No 13
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.31 E-value=0.024 Score=46.58 Aligned_cols=54 Identities=26% Similarity=0.225 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHhhc-----CC-----------CChHHHHhhhccC-CCCCCcccch-hhhhhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKY-----GA-----------GRWSEIKRLAFAS-YSYRTSVDLK-VWTYIIVLGL 579 (586)
Q Consensus 526 rr~WT~eEveaLveGV~ky-----Gv-----------G~Wk~Il~~~~~~-f~~RT~VDLK-KWRNL~K~s~ 579 (586)
..+||.+|.+.|++-|.+| |. ..|..|...+-.. ...||..+|| +|.||.....
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~K 73 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAK 73 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 3579999999999999998 42 2799998887333 3589999999 9999987553
No 14
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=94.08 E-value=0.056 Score=53.83 Aligned_cols=49 Identities=22% Similarity=0.287 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLGL 579 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s~ 579 (586)
+..||+||++.|++.-.+||- +|+.|-.. +.+||--++| =|..-+|.-.
T Consensus 62 rg~fT~eEe~~Ii~lH~~~GN-rWs~IA~~----LPGRTDNeIKN~Wnt~lkkkl 111 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHALLGN-RWSLIAGR----LPGRTDNEVKNHWNTHLKKKL 111 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHCc-HHHHHHhh----CCCcCHHHHHHHHHHHHHHHH
Confidence 678999999999999999998 89999877 6799999999 8877666443
No 15
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=92.30 E-value=0.1 Score=52.12 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=48.0
Q ss_pred CCCCCHHHHHHHHHHHhhc--CCCChHHHHhhhccCC-CCCCcccch-hhhhhhhhhhcc
Q 007868 526 HRAWTLSEVMKLVEGVSKY--GAGRWSEIKRLAFASY-SYRTSVDLK-VWTYIIVLGLAV 581 (586)
Q Consensus 526 rr~WT~eEveaLveGV~ky--GvG~Wk~Il~~~~~~f-~~RT~VDLK-KWRNL~K~s~~q 581 (586)
+-.||.+|.++|..+.... +..++.+|+.++..+| ..||+-.|. -||.|.++...+
T Consensus 73 kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~ 132 (199)
T PF13325_consen 73 KALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLP 132 (199)
T ss_pred cCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhh
Confidence 4689999999999987776 5679999999997776 669999999 999998876554
No 16
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=92.04 E-value=0.1 Score=59.76 Aligned_cols=50 Identities=30% Similarity=0.486 Sum_probs=39.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhh
Q 007868 523 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIV 576 (586)
Q Consensus 523 RK~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K 576 (586)
+-+.-+||..|.+.|+..|.+||+|+|.+|-.. +.+||.-++- +-+-+..
T Consensus 409 s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~----Lp~~t~~q~~rrR~R~~~ 459 (939)
T KOG0049|consen 409 SAKVERWTLVEDEQLLYAVKVYGKGNWAKCAML----LPKKTSRQLRRRRLRLIA 459 (939)
T ss_pred hhccCceeecchHHHHHHHHHHccchHHHHHHH----ccccchhHHHHHHHHHHH
Confidence 444568999999999999999999999999754 5688887766 4444443
No 17
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=91.89 E-value=0.11 Score=47.82 Aligned_cols=53 Identities=28% Similarity=0.413 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHhhh-------ccC-CCCCCcccch-hhhhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGA---GRWSEIKRLA-------FAS-YSYRTSVDLK-VWTYIIVLG 578 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGv---G~Wk~Il~~~-------~~~-f~~RT~VDLK-KWRNL~K~s 578 (586)
.+.||.+|-..|+--+.+||. |.|..|+..- |+- |..||+.+|+ +=..|+++-
T Consensus 49 ~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i 113 (118)
T PF09111_consen 49 KKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI 113 (118)
T ss_dssp -SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence 467999999999999999999 9999997664 322 5899999999 888888753
No 18
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=87.69 E-value=0.51 Score=54.35 Aligned_cols=51 Identities=27% Similarity=0.513 Sum_probs=44.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhhh
Q 007868 524 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLG 578 (586)
Q Consensus 524 K~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s 578 (586)
=++-+||.+|-..|+.+|.+||.--|.+|+.. |.+|+-.++. +|-|.+..+
T Consensus 358 ikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~----vPnRSdsQcR~RY~nvL~~s 409 (939)
T KOG0049|consen 358 VKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQA----VPNRSDSQCRERYTNVLNRS 409 (939)
T ss_pred ccCCCCCCHHHHHHHHHHHHhCccchhhHHHh----cCCccHHHHHHHHHHHHHHh
Confidence 34578999999999999999999999999977 6799999999 988876544
No 19
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=87.50 E-value=0.57 Score=56.27 Aligned_cols=53 Identities=25% Similarity=0.253 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHhhh-------cc-CCCCCCcccch-hhhhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLA-------FA-SYSYRTSVDLK-VWTYIIVLG 578 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~-------~~-~f~~RT~VDLK-KWRNL~K~s 578 (586)
.+.||.+|-..|+-.+.+||.|+|..|+..- |+ .|..||+.+|+ +-..|++.-
T Consensus 926 ~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~~ 987 (1033)
T PLN03142 926 GKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRLI 987 (1033)
T ss_pred CCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999986544 33 26899999999 988888754
No 20
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=87.39 E-value=0.49 Score=53.91 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhhhh
Q 007868 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLGL 579 (586)
Q Consensus 525 ~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s~ 579 (586)
.+-+||.+|.+.|..-|..+|. .|+.|-+.- +|.+.|.. +||+.++.+.
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~l-----gr~P~~crd~wr~~~~~g~ 432 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKAL-----GRMPMDCRDRWRQYVKCGS 432 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHH-----ccCcHHHHHHHHHhhcccc
Confidence 4568999999999999999997 999998774 69999999 9999999875
No 21
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=82.36 E-value=1.6 Score=45.42 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHhh----cCCCC-----hHHHHhhhccCCCCCCcccch-hhhhhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSK----YGAGR-----WSEIKRLAFASYSYRTSVDLK-VWTYIIVLGL 579 (586)
Q Consensus 526 rr~WT~eEveaLveGV~k----yGvG~-----Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s~ 579 (586)
...|+.+|+.+|++--.+ |..|+ |..|-+.....-..||+.+.| ||.||.|...
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk 117 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYK 117 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 689999999999986653 34566 999987543344579999999 9999998644
No 22
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=80.95 E-value=1.3 Score=47.69 Aligned_cols=43 Identities=23% Similarity=0.502 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhh
Q 007868 528 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYI 574 (586)
Q Consensus 528 ~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL 574 (586)
-|+..|+-.|++|....|.|||..|...-. .|+.-+.| -|-.|
T Consensus 65 ~WgadEEllli~~~~TlGlGNW~dIadyiG----sr~kee~k~HylK~ 108 (432)
T COG5114 65 GWGADEELLLIECLDTLGLGNWEDIADYIG----SRAKEEIKSHYLKM 108 (432)
T ss_pred CcCchHHHHHHHHHHhcCCCcHHHHHHHHh----hhhhHHHHHHHHHH
Confidence 599999999999999999999999986633 78888888 55444
No 23
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.83 E-value=1.1 Score=43.97 Aligned_cols=31 Identities=29% Similarity=0.572 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLA 556 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~ 556 (586)
..-|-..---.|+.||-.||.|+|.+|.+++
T Consensus 3 ~~iw~r~hdywll~gi~~hgy~rwqdi~nd~ 33 (173)
T PF08074_consen 3 YEIWHRRHDYWLLAGIVKHGYGRWQDIQNDP 33 (173)
T ss_pred hhhhhhhhhHHHHhHHhhccchhHHHHhcCC
Confidence 4457777777899999999999999999998
No 24
>PF11149 DUF2924: Protein of unknown function (DUF2924); InterPro: IPR021322 This entry is represented by Bacteriophage WO, Gp30. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This bacterial family of proteins has no known function.
Probab=75.21 E-value=2.1 Score=40.78 Aligned_cols=39 Identities=26% Similarity=0.575 Sum_probs=36.4
Q ss_pred ccccccHHHHHHHhhhccCcccccchhhHHHHHhhcccc
Q 007868 233 CLDNLSIKELHETFKATFGRETTVKDKQWLKRRIAMGLT 271 (586)
Q Consensus 233 ~LDnLsIrELhEtFraTFGReTtVKDK~WLKRrIsmGL~ 271 (586)
-|..|++.||.+.++..||.++---.++||.+||+.-++
T Consensus 7 ~L~~l~~~eL~~~W~~~fg~~pp~~~r~~L~~rlAyriQ 45 (136)
T PF11149_consen 7 ALPDLPMPELRARWRRLFGSPPPHHNRDFLERRLAYRIQ 45 (136)
T ss_pred hcccCCHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHH
Confidence 488999999999999999999999999999999988765
No 25
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=72.86 E-value=2.1 Score=52.49 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=32.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCC
Q 007868 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSY 562 (586)
Q Consensus 525 ~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~ 562 (586)
.---|..++-.+|+-||-+||.|+|..|+.++.-.|..
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~d 1169 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTD 1169 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCccccchh
Confidence 45679999999999999999999999999998544433
No 26
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=69.20 E-value=4.5 Score=45.58 Aligned_cols=44 Identities=18% Similarity=0.457 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYI 574 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL 574 (586)
+..||..|+-.|++||++||- .|.+|-.+- ..||.=+.= |+..|
T Consensus 253 ~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hV----g~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 253 RPNWTEQETLLLLEAIEMYGD-DWNKVADHV----GTKSQEQCILKFLRL 297 (506)
T ss_pred CCCccHHHHHHHHHHHHHhcc-cHHHHHhcc----CCCCHHHHHHHHHhc
Confidence 457999999999999999998 999998762 367766655 66554
No 27
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=67.76 E-value=4.1 Score=45.69 Aligned_cols=29 Identities=31% Similarity=0.870 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRL 555 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~ 555 (586)
.+.||.+|.-.|.+||+.||- .|.+|..+
T Consensus 279 dk~WS~qE~~LLLEGIe~ygD-dW~kVA~H 307 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYGD-DWDKVARH 307 (531)
T ss_pred cccccHHHHHHHHHHHHHhhh-hHHHHHHH
Confidence 358999999999999999998 99999876
No 28
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=61.88 E-value=4.5 Score=45.92 Aligned_cols=42 Identities=33% Similarity=0.585 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhh
Q 007868 527 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWT 572 (586)
Q Consensus 527 r~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWR 572 (586)
.-|+.-|.+.|..+|.+||.-.|+.|...+ +.-|+-..| +|-
T Consensus 8 gvwrntEdeilkaav~kyg~nqws~i~sll----~~kt~rqC~~rw~ 50 (617)
T KOG0050|consen 8 GVWRNTEDEVLKAAVMKYGKNQWSRIASLL----NRKTARQCKARWE 50 (617)
T ss_pred ceecccHHHHHHHHHHHcchHHHHHHHHHH----hhcchhHHHHHHH
Confidence 359999999999999999999999998774 456777777 775
No 29
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=51.22 E-value=15 Score=30.80 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHhhc-------CCC-----ChHHHHhhhccCC-CCCCcccch-hhhhhhhh
Q 007868 528 AWTLSEVMKLVEGVSKY-------GAG-----RWSEIKRLAFASY-SYRTSVDLK-VWTYIIVL 577 (586)
Q Consensus 528 ~WT~eEveaLveGV~ky-------GvG-----~Wk~Il~~~~~~f-~~RT~VDLK-KWRNL~K~ 577 (586)
+||+++++.|++.+... +-| .|..|.......+ ..-|.-.|| ||+.|.+.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~ 64 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD 64 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence 59999999999887543 222 4788877753332 445677889 99999874
No 30
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=46.90 E-value=22 Score=41.13 Aligned_cols=49 Identities=18% Similarity=0.500 Sum_probs=40.3
Q ss_pred CCCCCCCHHHHHHHHHHHh-------hc-------------------CCCChHHHHhhhccCCCCCCcccch-hhhhhhh
Q 007868 524 KHHRAWTLSEVMKLVEGVS-------KY-------------------GAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIV 576 (586)
Q Consensus 524 K~rr~WT~eEveaLveGV~-------ky-------------------GvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K 576 (586)
+.+.+||-+|.+.|++-|+ .| ++ +|..|-.. ...|+.+... ||-.|+.
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I-~Wt~vse~----~~TR~~~qCr~Kw~kl~~ 508 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDI-NWTLVSEM----LGTRSRIQCRYKWYKLTT 508 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCc-chhhhhHh----hcCCCcchHHHHHHHHHh
Confidence 4467899999999999996 44 22 89999874 5689999999 9999987
Q ss_pred h
Q 007868 577 L 577 (586)
Q Consensus 577 ~ 577 (586)
.
T Consensus 509 ~ 509 (607)
T KOG0051|consen 509 S 509 (607)
T ss_pred h
Confidence 3
No 31
>TIGR01624 LRP1_Cterm LRP1 C-terminal domain. This model represents a tightly conserved small domain found in LRP1 and related plant proteins. This family also contains a well-conserved putative zinc finger domain (TIGR01623). The rest of the sequence of most members consists of highly divergent, low-complexity sequence.
Probab=40.67 E-value=23 Score=29.02 Aligned_cols=17 Identities=41% Similarity=0.640 Sum_probs=14.7
Q ss_pred CCCCCCceEEEEEEEcC
Q 007868 30 PNLGADPVVYKLVRVDG 46 (586)
Q Consensus 30 ~~qi~~pvvyklvRV~g 46 (586)
|-+++-|.|++||||.+
T Consensus 3 P~ev~s~AvFrcvRvs~ 19 (50)
T TIGR01624 3 PGEVSAPAVFKCVRVTA 19 (50)
T ss_pred ccccccceEEEEEEEec
Confidence 66889999999999953
No 32
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=36.04 E-value=42 Score=29.96 Aligned_cols=53 Identities=11% Similarity=0.202 Sum_probs=34.4
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCCChHHHHhhh---ccCC-CCCCcccch-hhhhhhhh
Q 007868 525 HHRAWTLSEVMKLVEGVSKY----GAGRWSEIKRLA---FASY-SYRTSVDLK-VWTYIIVL 577 (586)
Q Consensus 525 ~rr~WT~eEveaLveGV~ky----GvG~Wk~Il~~~---~~~f-~~RT~VDLK-KWRNL~K~ 577 (586)
-.|.||++++-.|++|+-.| |......+-..| ...+ ..=|..+|. |-|.|.+.
T Consensus 3 ~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~K 64 (98)
T PF04504_consen 3 FQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKK 64 (98)
T ss_pred CcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 35679999999999999877 876544432222 1111 122567777 88887764
No 33
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=30.33 E-value=22 Score=39.50 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHhhhcc-CCC-CCCcccch-hhhhhhh
Q 007868 527 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFA-SYS-YRTSVDLK-VWTYIIV 576 (586)
Q Consensus 527 r~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~-~f~-~RT~VDLK-KWRNL~K 576 (586)
..||-+|++.|-+-.++|-. +|--|...|.. .|. .||-=||| ||.-.++
T Consensus 131 n~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r 182 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVCR 182 (445)
T ss_pred ccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHHH
Confidence 46999999999999999988 89888877632 254 49999999 9976665
No 34
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=28.73 E-value=98 Score=36.41 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTY 573 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRN 573 (586)
++.||..|++++-+|++.||. .+.+|.+.....-+.-|-+..| |..+
T Consensus 88 ktaWt~~E~~~Ffdal~~~GK-dFe~VinaklKRrna~s~~~~Ktkdqv 135 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGK-DFEKVINAKLKRRNATSRVQSKTKDQV 135 (782)
T ss_pred ccccchhhHHHHHHHHHHhcc-cHHHHHHHHHHhcccccchhhhhhHHH
Confidence 678999999999999999999 6666644433223445556666 6544
No 35
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=28.01 E-value=75 Score=35.54 Aligned_cols=52 Identities=21% Similarity=0.360 Sum_probs=41.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhh
Q 007868 521 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVL 577 (586)
Q Consensus 521 ~rRK~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~ 577 (586)
.+++..-+||.+|.+.+-.++..||. -+..|-.. |.+|..-++| ||-+=.|.
T Consensus 360 g~~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~l----fP~R~RkqIKaKfi~Eek~ 412 (507)
T COG5118 360 GKKKGALRWSKKEIEKFYKALSIWGT-DFSLISSL----FPNRERKQIKAKFIKEEKV 412 (507)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHhcc-hHHHHHHh----cCchhHHHHHHHHHHHhhh
Confidence 34556789999999999999999999 78888766 5578888888 88765553
No 36
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=26.09 E-value=28 Score=21.47 Aligned_cols=9 Identities=67% Similarity=1.180 Sum_probs=3.7
Q ss_pred ccCCCCcch
Q 007868 433 RRSRPRKNV 441 (586)
Q Consensus 433 rR~rprKn~ 441 (586)
.||||+|+.
T Consensus 3 ~RGRP~k~~ 11 (13)
T PF02178_consen 3 KRGRPRKNA 11 (13)
T ss_dssp -SS--TT--
T ss_pred cCCCCcccc
Confidence 589999974
No 37
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=24.20 E-value=80 Score=25.35 Aligned_cols=19 Identities=11% Similarity=0.163 Sum_probs=11.5
Q ss_pred CCCCCCCCHHHHHHHHHHH
Q 007868 523 RKHHRAWTLSEVMKLVEGV 541 (586)
Q Consensus 523 RK~rr~WT~eEveaLveGV 541 (586)
+++++.||.++-..++..+
T Consensus 1 m~~r~~ys~e~K~~~v~~~ 19 (76)
T PF01527_consen 1 MRKRRRYSPEFKLQAVREY 19 (76)
T ss_dssp --SS----HHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 3567889999999999888
No 38
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=22.98 E-value=27 Score=39.67 Aligned_cols=50 Identities=28% Similarity=0.466 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhhhhc
Q 007868 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLGLA 580 (586)
Q Consensus 525 ~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s~~ 580 (586)
.+..||.+|+..|..=|.++|. .|+.|.... +|-+-|+- .||+.++.+..
T Consensus 290 ~~~~wt~e~~~eL~~~~~~~~~-~w~~ig~~~-----~rmp~~crd~wr~~~~~g~t 340 (512)
T COG5147 290 QRGKWTKEEEQELAKLVVEHGG-SWTEIGKLL-----GRMPNDCRDRWRDYVKCGDT 340 (512)
T ss_pred hhccCccccccccccccccccc-hhhHhhhhh-----ccCcHHHHHHHhhhccccCc
Confidence 4568999999999999999975 999998773 68999999 99999987643
No 39
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=20.78 E-value=99 Score=34.49 Aligned_cols=50 Identities=22% Similarity=0.392 Sum_probs=35.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccchhhhhhhh
Q 007868 523 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKVWTYIIV 576 (586)
Q Consensus 523 RK~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLKKWRNL~K 576 (586)
|-----||++|-.++-+|++.||+ .+..|... ....|+---|=-|.-|.|
T Consensus 274 rd~l~~wsEeEcr~FEegl~~yGK-DF~lIr~n---kvrtRsvgElVeyYYlWK 323 (445)
T KOG4329|consen 274 RDDLSGWSEEECRNFEEGLELYGK-DFHLIRAN---KVRTRSVGELVEYYYLWK 323 (445)
T ss_pred ccccccCCHHHHHHHHHHHHHhcc-cHHHHHhc---ccccchHHHHHHHHHHhh
Confidence 333457999999999999999999 78888765 355666544433333333
No 40
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=20.66 E-value=80 Score=36.13 Aligned_cols=44 Identities=25% Similarity=0.411 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTY 573 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRN 573 (586)
.-.|+..|-+.|.-.|++||.-+|+.|-..+ ..||+=|-+ +|-|
T Consensus 20 ~gsw~~~EDe~l~~~vk~l~~nnws~vas~~----~~~~~kq~~~rw~~ 64 (512)
T COG5147 20 GGSWKRTEDEDLKALVKKLGPNNWSKVASLL----ISSTGKQSSNRWNN 64 (512)
T ss_pred CCCCCCcchhHHHHHHhhcccccHHHHHHHh----cccccccccchhhh
Confidence 3489999999999999999999999998764 459999999 8843
Done!