Query 007868
Match_columns 586
No_of_seqs 128 out of 280
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 12:29:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2roh_A RTBP1, telomere binding 99.7 1.5E-17 5.3E-22 149.5 7.0 74 507-580 8-86 (122)
2 2aje_A Telomere repeat-binding 99.7 5.5E-17 1.9E-21 142.6 5.4 60 521-580 8-68 (105)
3 1x58_A Hypothetical protein 49 99.6 8.1E-17 2.8E-21 130.4 4.9 53 524-578 6-59 (62)
4 2juh_A Telomere binding protei 99.6 1.5E-16 5.3E-21 142.9 5.8 63 518-580 9-72 (121)
5 2ckx_A NGTRF1, telomere bindin 99.6 6.7E-16 2.3E-20 130.4 5.1 54 527-580 1-55 (83)
6 3sjm_A Telomeric repeat-bindin 99.4 2.7E-13 9.3E-18 109.0 5.0 53 525-579 10-63 (64)
7 1ity_A TRF1; helix-turn-helix, 99.2 2.2E-11 7.5E-16 97.9 5.9 58 521-580 5-63 (69)
8 1w0t_A Telomeric repeat bindin 99.2 1.7E-11 5.7E-16 94.1 4.8 50 526-577 2-52 (53)
9 1guu_A C-MYB, MYB proto-oncoge 98.7 9.4E-09 3.2E-13 78.0 4.7 47 526-576 3-50 (52)
10 2d9a_A B-MYB, MYB-related prot 98.7 1.3E-08 4.4E-13 79.5 5.3 51 523-577 5-56 (60)
11 1gvd_A MYB proto-oncogene prot 98.6 3.4E-08 1.2E-12 75.1 4.5 47 526-576 3-50 (52)
12 1x41_A Transcriptional adaptor 98.5 6.3E-08 2.1E-12 76.1 4.8 49 525-577 7-56 (60)
13 2dim_A Cell division cycle 5-l 98.5 1.1E-07 3.8E-12 76.4 5.3 50 524-577 7-57 (70)
14 2elk_A SPCC24B10.08C protein; 98.5 9.1E-08 3.1E-12 75.0 4.1 45 527-575 10-56 (58)
15 2yus_A SWI/SNF-related matrix- 98.4 2.4E-07 8.1E-12 77.4 5.2 50 520-574 12-62 (79)
16 2cu7_A KIAA1915 protein; nucle 98.3 4.7E-07 1.6E-11 73.3 4.6 51 525-580 8-59 (72)
17 2yum_A ZZZ3 protein, zinc fing 98.2 9.1E-07 3.1E-11 71.8 4.5 52 523-578 5-62 (75)
18 1gv2_A C-MYB, MYB proto-oncoge 98.1 2.2E-06 7.6E-11 72.9 4.5 47 526-576 4-51 (105)
19 2din_A Cell division cycle 5-l 98.1 3.4E-06 1.2E-10 67.0 5.2 50 525-580 8-58 (66)
20 2llk_A Cyclin-D-binding MYB-li 98.0 2.4E-06 8.1E-11 70.8 3.6 48 524-577 21-69 (73)
21 3osg_A MYB21; transcription-DN 98.0 4.1E-06 1.4E-10 74.0 5.2 47 526-577 62-109 (126)
22 1gv2_A C-MYB, MYB proto-oncoge 98.0 3.4E-06 1.2E-10 71.7 4.5 47 526-577 56-103 (105)
23 3osg_A MYB21; transcription-DN 98.0 4.6E-06 1.6E-10 73.6 5.0 49 523-576 8-57 (126)
24 1h8a_C AMV V-MYB, MYB transfor 98.0 5.1E-06 1.7E-10 73.2 5.2 48 525-576 26-74 (128)
25 2k9n_A MYB24; R2R3 domain, DNA 98.0 4.6E-06 1.6E-10 71.6 4.3 47 526-577 53-100 (107)
26 2k9n_A MYB24; R2R3 domain, DNA 98.0 5.6E-06 1.9E-10 71.1 4.5 46 527-576 2-48 (107)
27 2cqr_A RSGI RUH-043, DNAJ homo 98.0 5.2E-06 1.8E-10 68.7 4.1 53 521-577 13-69 (73)
28 3zqc_A MYB3; transcription-DNA 97.9 9.2E-06 3.1E-10 72.1 4.8 50 526-580 54-104 (131)
29 1h8a_C AMV V-MYB, MYB transfor 97.9 1.2E-05 4.2E-10 70.7 4.9 47 526-577 79-126 (128)
30 3zqc_A MYB3; transcription-DNA 97.8 1.3E-05 4.3E-10 71.2 3.7 46 527-576 3-49 (131)
31 2ltp_A Nuclear receptor corepr 96.9 4.3E-06 1.5E-10 70.7 0.0 48 526-578 16-64 (89)
32 1h89_C C-MYB, MYB proto-oncoge 97.7 3.2E-05 1.1E-09 70.3 4.5 47 526-576 58-105 (159)
33 1h89_C C-MYB, MYB proto-oncoge 97.6 4.8E-05 1.6E-09 69.1 4.6 47 526-577 110-157 (159)
34 2cjj_A Radialis; plant develop 97.3 0.00018 6.1E-09 62.1 4.4 48 526-577 8-59 (93)
35 2eqr_A N-COR1, N-COR, nuclear 97.2 0.00044 1.5E-08 54.7 5.6 51 521-576 7-58 (61)
36 4b4c_A Chromodomain-helicase-D 97.0 0.00066 2.2E-08 63.6 5.4 50 527-576 135-195 (211)
37 3hm5_A DNA methyltransferase 1 96.9 0.00084 2.9E-08 58.3 4.5 53 527-580 31-85 (93)
38 2cqq_A RSGI RUH-037, DNAJ homo 96.8 0.0012 4E-08 54.4 4.5 48 526-578 8-59 (72)
39 1ign_A Protein (RAP1); RAP1,ye 96.7 0.00098 3.3E-08 66.4 3.8 49 526-578 8-62 (246)
40 2xb0_X Chromo domain-containin 96.3 0.0018 6.2E-08 65.0 3.5 31 527-557 169-199 (270)
41 1wgx_A KIAA1903 protein; MYB D 96.1 0.004 1.4E-07 51.9 3.8 53 527-583 9-65 (73)
42 2ebi_A DNA binding protein GT- 95.7 0.0031 1.1E-07 52.2 1.7 56 524-580 2-68 (86)
43 2iw5_B Protein corest, REST co 95.7 0.0081 2.8E-07 59.6 4.6 50 523-577 130-180 (235)
44 2yqk_A Arginine-glutamic acid 95.7 0.017 5.7E-07 46.1 5.6 50 523-576 6-55 (63)
45 4iej_A DNA methyltransferase 1 95.6 0.01 3.6E-07 51.6 4.4 55 528-583 32-88 (93)
46 2crg_A Metastasis associated p 94.5 0.06 2.1E-06 43.8 5.7 43 523-569 5-47 (70)
47 1irz_A ARR10-B; helix-turn-hel 94.4 0.055 1.9E-06 44.2 5.3 53 522-576 3-61 (64)
48 4b4c_A Chromodomain-helicase-D 94.0 0.042 1.4E-06 51.4 4.3 52 523-576 4-58 (211)
49 1ofc_X ISWI protein; nuclear p 93.9 0.021 7.3E-07 58.3 2.3 52 526-577 212-275 (304)
50 2y9y_A Imitation switch protei 92.2 0.068 2.3E-06 56.1 3.0 53 526-578 228-292 (374)
51 2xag_B REST corepressor 1; ami 91.2 0.19 6.6E-06 54.2 5.3 45 524-573 378-423 (482)
52 4a69_C Nuclear receptor corepr 85.4 0.45 1.5E-05 40.7 2.8 44 523-571 40-83 (94)
53 2xb0_X Chromo domain-containin 84.2 1 3.5E-05 45.3 5.1 52 525-578 2-56 (270)
54 4eef_G F-HB80.4, designed hema 84.1 0.35 1.2E-05 40.7 1.4 40 526-569 20-62 (74)
55 1fex_A TRF2-interacting telome 76.9 2.3 7.7E-05 33.6 3.8 48 526-576 2-58 (59)
56 1ug2_A 2610100B20RIK gene prod 67.8 6.8 0.00023 34.3 4.9 59 522-584 29-90 (95)
57 2xag_B REST corepressor 1; ami 29.9 11 0.00038 40.9 0.0 37 527-568 190-226 (482)
58 2lr8_A CAsp8-associated protei 35.1 12 0.0004 31.3 0.0 50 526-580 14-66 (70)
59 2crr_A Stromal membrane-associ 22.1 36 0.0012 31.1 1.9 55 113-171 9-70 (141)
60 1ign_A Protein (RAP1); RAP1,ye 20.9 85 0.0029 31.5 4.4 28 547-578 172-200 (246)
61 1ofc_X ISWI protein; nuclear p 20.5 60 0.002 33.3 3.3 42 524-569 108-149 (304)
No 1
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.70 E-value=1.5e-17 Score=149.55 Aligned_cols=74 Identities=34% Similarity=0.493 Sum_probs=62.4
Q ss_pred CCCCCceeecccCC----CCCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhhhhc
Q 007868 507 PDDNPATVRAVKGG----VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLGLA 580 (586)
Q Consensus 507 sdd~~~t~p~~K~g----~rRK~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s~~ 580 (586)
+.+..+.+|.+|.+ .+||++++||.||+++|++||++||.|+|+.|++.+|+.|.+||.|||| |||||+|.+.+
T Consensus 8 ~~~~~~~~p~~k~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~ 86 (122)
T 2roh_A 8 NSLALANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASI 86 (122)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHS
T ss_pred CcccccccCcccCCCcCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccC
Confidence 33444556654433 4688899999999999999999999999999999988889999999999 99999987654
No 2
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.65 E-value=5.5e-17 Score=142.62 Aligned_cols=60 Identities=37% Similarity=0.638 Sum_probs=54.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhhhhc
Q 007868 521 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLGLA 580 (586)
Q Consensus 521 ~rRK~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s~~ 580 (586)
++|+++++||.||+++|++||++||.|+|+.|++.+|+.|.+||.|||| |||||+|.+.+
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~ 68 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKI 68 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccC
Confidence 4577788999999999999999999999999999988789999999999 99999997654
No 3
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=8.1e-17 Score=130.44 Aligned_cols=53 Identities=26% Similarity=0.297 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhhh
Q 007868 524 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLG 578 (586)
Q Consensus 524 K~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s 578 (586)
+.+++||.||+++|++||++||. +|+.|+..|.+ |.+||+|||| |||||.|..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f-~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPF-QKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCC-CTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCC-ccCcccchHHHHHHHHHhcc
Confidence 35678999999999999999999 99999999753 8999999999 999999864
No 4
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.63 E-value=1.5e-16 Score=142.89 Aligned_cols=63 Identities=35% Similarity=0.581 Sum_probs=57.2
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhhhhc
Q 007868 518 KGGVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLGLA 580 (586)
Q Consensus 518 K~g~rRK~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s~~ 580 (586)
....+++++++||.||+++|++||++||.|+|+.|++.+++.|.+||.|||| |||||++.+..
T Consensus 9 ~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~ 72 (121)
T 2juh_A 9 SELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI 72 (121)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHT
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhcc
Confidence 3345688889999999999999999999999999999998889999999999 99999996654
No 5
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.59 E-value=6.7e-16 Score=130.44 Aligned_cols=54 Identities=39% Similarity=0.670 Sum_probs=50.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhhhhc
Q 007868 527 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLGLA 580 (586)
Q Consensus 527 r~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s~~ 580 (586)
++||.||+++|++||++||.|+|+.|++.+|+.|.+||.+||| |||||+|.+..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~ 55 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI 55 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccC
Confidence 5799999999999999999999999999988779999999999 99999997654
No 6
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.38 E-value=2.7e-13 Score=108.97 Aligned_cols=53 Identities=34% Similarity=0.663 Sum_probs=47.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhhhh
Q 007868 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLGL 579 (586)
Q Consensus 525 ~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s~ 579 (586)
++++||.||.++|+++|++||.|+|+.|.+.++ |.+||+++++ |||||+|.+.
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYP--FVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhcC--CCCCCHHHHHHHHHHHhccCC
Confidence 346899999999999999999999999998753 7799999999 9999998653
No 7
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.18 E-value=2.2e-11 Score=97.89 Aligned_cols=58 Identities=40% Similarity=0.625 Sum_probs=50.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhhhhc
Q 007868 521 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLGLA 580 (586)
Q Consensus 521 ~rRK~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s~~ 580 (586)
.+++++.+||.||.++|+++|++||.|+|+.|.... .|.+||.++++ +|+|+++-...
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~--~~~~Rt~~qcr~Rw~~~l~p~i~ 63 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY--KFNNRTSVMLKDRWRTMKKLKLI 63 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHS--CCSSCCHHHHHHHHHHHHHTSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHc--CcCCCCHHHHHHHHHHHcCCCCC
Confidence 346677899999999999999999999999999873 25599999999 99999986544
No 8
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.18 E-value=1.7e-11 Score=94.05 Aligned_cols=50 Identities=42% Similarity=0.675 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVL 577 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~ 577 (586)
+.+||.||.+.|+++|++||.|+|+.|.... .|.+||+++++ +|+||+|+
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~--~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHY--KFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHS--CCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHc--CCCCCCHHHHHHHHHHHHcc
Confidence 5689999999999999999999999999873 25589999999 99999985
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.72 E-value=9.4e-09 Score=78.02 Aligned_cols=47 Identities=28% Similarity=0.478 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIV 576 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K 576 (586)
+.+||.+|.+.|+++|++||.++|+.|... |.+||..+++ +|+|++.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~----~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANY----LPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHT----STTCCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHH----cCCCCHHHHHHHHHHHcC
Confidence 468999999999999999999999999866 5689999999 9999874
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.71 E-value=1.3e-08 Score=79.47 Aligned_cols=51 Identities=20% Similarity=0.367 Sum_probs=45.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhh
Q 007868 523 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVL 577 (586)
Q Consensus 523 RK~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~ 577 (586)
..++.+||.||.+.|+++|++||.++|+.|... |.+||..+++ +|+|+++-
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~----~~~Rt~~qcr~Rw~~~l~p 56 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDWKFLASH----FPNRTDQQCQYRWLRVLSG 56 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHH----CSSSCHHHHHHHHHHTSCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH----ccCCCHHHHHHHHHHHcCC
Confidence 344578999999999999999999999999876 5689999999 99998763
No 11
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.59 E-value=3.4e-08 Score=75.10 Aligned_cols=47 Identities=30% Similarity=0.532 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIV 576 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K 576 (586)
+.+||.+|.+.|+++|++||.++|+.|... +.+||..+.+ +|.|.+.
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~----~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKH----LKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTT----STTCCHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHH----cCCCCHHHHHHHHHHHcC
Confidence 468999999999999999999999999866 5699999999 9999864
No 12
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.54 E-value=6.3e-08 Score=76.11 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhh
Q 007868 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVL 577 (586)
Q Consensus 525 ~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~ 577 (586)
.+.+||.+|.+.|+++|++||.++|+.|-+.. .+||..+.+ +|.|++.-
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQM----CTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHH----TTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHh----CCCCHHHHHHHHHHHccC
Confidence 35689999999999999999999999998773 589999999 99998763
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=1.1e-07 Score=76.38 Aligned_cols=50 Identities=26% Similarity=0.415 Sum_probs=44.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhh
Q 007868 524 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVL 577 (586)
Q Consensus 524 K~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~ 577 (586)
.++.+||.+|.+.|++.|++||.++|+.|-.. +.+||..+.+ +|+|+++-
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~----l~~Rt~~qcr~Rw~~~L~p 57 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASL----LHRKSAKQCKARWYEWLDP 57 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHH----STTCCHHHHHHHHHHTSCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH----hcCCCHHHHHHHHHHHcCC
Confidence 34568999999999999999999999999876 4589999999 99998764
No 14
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.47 E-value=9.1e-08 Score=74.97 Aligned_cols=45 Identities=20% Similarity=0.467 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCC-CCCcccch-hhhhhh
Q 007868 527 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYS-YRTSVDLK-VWTYII 575 (586)
Q Consensus 527 r~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~-~RT~VDLK-KWRNL~ 575 (586)
.+||.+|.+.|+++|++||.++|+.|-+. +. +||..+.+ +|.|+.
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~~W~~IA~~----~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLGNWADIADY----VGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCHHHHHHH----HCSSCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHH----HCCCCCHHHHHHHHHHHc
Confidence 47999999999999999999999999866 44 89999999 999864
No 15
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.41 E-value=2.4e-07 Score=77.39 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhh
Q 007868 520 GVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYI 574 (586)
Q Consensus 520 g~rRK~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL 574 (586)
+..+..+.+||.+|.+.|+++|++|| ++|..|-+. +..||..+.+ +|.++
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~----v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEH----VGSRTQDECILHFLRL 62 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHH----HSSCCHHHHHHHHTTS
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHH----cCCCCHHHHHHHHHHh
Confidence 44555678999999999999999999 999999876 3479999999 99998
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.31 E-value=4.7e-07 Score=73.34 Aligned_cols=51 Identities=25% Similarity=0.470 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhhhhc
Q 007868 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLGLA 580 (586)
Q Consensus 525 ~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s~~ 580 (586)
.+.+||.||.+.|+++|++||. +|+.|-.. +.+||..++| +|.++++.-..
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~----~~~Rt~~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGR-RWTKISKL----IGSRTVLQVKSYARQYFKNKVK 59 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCS-CHHHHHHH----HSSSCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999 99999875 5689999999 99999876543
No 17
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=9.1e-07 Score=71.77 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=44.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCC-----CChHHHHhhhccCCCCCCcccch-hhhhhhhhh
Q 007868 523 RKHHRAWTLSEVMKLVEGVSKYGA-----GRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLG 578 (586)
Q Consensus 523 RK~rr~WT~eEveaLveGV~kyGv-----G~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s 578 (586)
...+.+||.||.+.|+++|++||. ++|..|-.. +.+||..+.+ +|.++++..
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~----~~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADE----LGNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHH----HSSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHH----hCCCCHHHHHHHHHHHHHHH
Confidence 334568999999999999999997 799999876 4589999999 998877643
No 18
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.09 E-value=2.2e-06 Score=72.86 Aligned_cols=47 Identities=28% Similarity=0.516 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIV 576 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K 576 (586)
+.+||.+|.+.|+++|++||.++|..|-.. +.+||..+.+ +|+|++.
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~----l~~Rt~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKH----LKGRIGKQCRERWHNHLN 51 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHHTT----STTCCHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHhhh----hcCCCHHHHHHHHHhccC
Confidence 468999999999999999999999999865 5799999999 9999764
No 19
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=3.4e-06 Score=66.97 Aligned_cols=50 Identities=16% Similarity=0.289 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhhhhc
Q 007868 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLGLA 580 (586)
Q Consensus 525 ~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s~~ 580 (586)
.+.+||.+|.+.|++.|++||. +|+.|-. .. +||..+.+ +|.++++....
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~----gRt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II----GRTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH----SSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc----CcCHHHHHHHHHHHhChHhc
Confidence 3468999999999999999999 9999998 33 59999999 99999875543
No 20
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.04 E-value=2.4e-06 Score=70.80 Aligned_cols=48 Identities=25% Similarity=0.263 Sum_probs=41.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhh
Q 007868 524 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVL 577 (586)
Q Consensus 524 K~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~ 577 (586)
-.+.+||+||.+.|++.|++||. +|+.|-+. + +||..++| +|+.|.+.
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~----l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGN-DWATIGAA----L-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHH----H-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHH----h-CCCHHHHHHHHHHHHHH
Confidence 34568999999999999999998 59999876 5 89999999 99988653
No 21
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.03 E-value=4.1e-06 Score=73.97 Aligned_cols=47 Identities=32% Similarity=0.673 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVL 577 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~ 577 (586)
+.+||.+|.+.|+++|++|| .+|+.|-.. +.+||..++| +|++|++.
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~----l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYG-RQWAIIAKF----FPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHC-SCHHHHHTT----STTCCHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHC-cCHHHHHHH----cCCCCHHHHHHHHHHHHHh
Confidence 35799999999999999999 589999864 6799999999 99999874
No 22
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.03 E-value=3.4e-06 Score=71.67 Aligned_cols=47 Identities=28% Similarity=0.522 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVL 577 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~ 577 (586)
+.+||.+|.+.|+++|++||. +|+.|-.. +.+||..++| +|+++++.
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSS-CHHHHHTT----CTTCCHHHHHHHHHHHTC-
T ss_pred ccCCCHHHHHHHHHHHHHhCC-CHHHHHHH----cCCCCHHHHHHHHHHHHhc
Confidence 458999999999999999996 99999864 6799999999 99999874
No 23
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.01 E-value=4.6e-06 Score=73.65 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=43.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhh
Q 007868 523 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIV 576 (586)
Q Consensus 523 RK~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K 576 (586)
..++.+||.||.+.|+++|++||. +|+.|... +.+||..+.. +|+|.+.
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~----~~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAAT----FPNRNARQCRDRWKNYLA 57 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHT----CTTCCHHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHH----cCCCCHHHHHHHHhhhcc
Confidence 344568999999999999999998 99999765 5689999999 9999764
No 24
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.00 E-value=5.1e-06 Score=73.16 Aligned_cols=48 Identities=29% Similarity=0.583 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhh
Q 007868 525 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIV 576 (586)
Q Consensus 525 ~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K 576 (586)
.+.+||.||.+.|+++|++||.++|+.|... +.+||..+.+ +|.|++.
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~----l~~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKH----LKGRIGKQCRERWHNHLN 74 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHH----SSSCCHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH----hcCCcHHHHHHHHHHhcc
Confidence 3468999999999999999999999999866 5699999999 9999765
No 25
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.97 E-value=4.6e-06 Score=71.63 Aligned_cols=47 Identities=23% Similarity=0.591 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVL 577 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~ 577 (586)
+.+||.+|.+.|+++|.+||. +|+.|-+. |.+||..++| +|++|++.
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGP-KWNKISKF----LKNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCS-CHHHHHHH----HSSSCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCc-CHHHHHHH----CCCCCHHHHHHHHHHHHhh
Confidence 458999999999999999997 99999875 4699999999 99999884
No 26
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.96 E-value=5.6e-06 Score=71.11 Aligned_cols=46 Identities=30% Similarity=0.467 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhh
Q 007868 527 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIV 576 (586)
Q Consensus 527 r~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K 576 (586)
.+||.+|.+.|+++|++||.++|..|-.. +.+||+.+.. +|+|.+.
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~----~~~Rt~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQL----MITRNPRQCRERWNNYIN 48 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHH----TTTSCHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhh----cCCCCHHHHHHHHHHHHc
Confidence 57999999999999999999999999865 4689999999 9999765
No 27
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.95 E-value=5.2e-06 Score=68.67 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=45.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCC---CChHHHHhhhccCCCCCCcccch-hhhhhhhh
Q 007868 521 VRRKHHRAWTLSEVMKLVEGVSKYGA---GRWSEIKRLAFASYSYRTSVDLK-VWTYIIVL 577 (586)
Q Consensus 521 ~rRK~rr~WT~eEveaLveGV~kyGv---G~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~ 577 (586)
+.+-.+.+||.+|..+|+.+|++||. .+|.+|-+. +.+||..+.+ +|.+|+..
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~----vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARC----VPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGG----CSSSCHHHHHHHHHHHHSS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH----cCCCCHHHHHHHHHHHHHc
Confidence 34555678999999999999999995 589999866 5689999999 99999863
No 28
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=97.89 E-value=9.2e-06 Score=72.06 Aligned_cols=50 Identities=30% Similarity=0.500 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhhhhc
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLGLA 580 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s~~ 580 (586)
+.+||.+|.+.|++.|.+|| .+|+.|-.. |.+||..++| +|+++++....
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~----l~gRt~~~~k~rw~~~l~~~~~ 104 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLG-SKWSVIAKL----IPGRTDNAIKNRWNSSISKRIS 104 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSC-SCHHHHTTT----STTCCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCHHHHHHHHHHHHHHC-cCHHHHHHH----cCCCCHHHHHHHHHHHHHHHhh
Confidence 34799999999999999999 599999854 6799999999 99999886543
No 29
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=97.85 E-value=1.2e-05 Score=70.72 Aligned_cols=47 Identities=28% Similarity=0.515 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVL 577 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~ 577 (586)
+.+||.||.+.|+++|++||. +|+.|-+. +.+||..++| +|++++|.
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS-CHHHHGGG----STTCCHHHHHHHHHTTTTC
T ss_pred cccCCHHHHHHHHHHHHHHCc-CHHHHHHH----CCCCCHHHHHHHHHHHHhc
Confidence 458999999999999999996 99999864 6799999999 99999874
No 30
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=97.77 E-value=1.3e-05 Score=71.19 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhh
Q 007868 527 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIV 576 (586)
Q Consensus 527 r~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K 576 (586)
.+||.||.+.|+++|++||.++|..|-.. +.+||..+.. +|+|.+.
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~~W~~Ia~~----~~~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQNWPRITSF----LPNRSPKQCRERWFNHLD 49 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSCCGGGGTTS----CTTSCHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHhCcCCHHHHHHH----HCCCCHHHHHHHHhhccC
Confidence 57999999999999999999999999754 5689999999 9999875
No 31
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=96.92 E-value=4.3e-06 Score=70.74 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLG 578 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s 578 (586)
+.+||.+|.+.|+++|++||. +|+.|-.. +.+||..++| +|.++++..
T Consensus 16 ~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~----l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 16 FQGWTEEEMGTAKKGLLEHGR-NWSAIARM----VGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 357999999999999999999 89999755 5799999999 999998753
No 32
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.66 E-value=3.2e-05 Score=70.28 Aligned_cols=47 Identities=28% Similarity=0.516 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIV 576 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K 576 (586)
+.+||.+|.+.|++.|++||.++|+.|-.. +.+||..+.+ +|+|++.
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~----l~~Rt~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKH----LKGRIGKQCRERWHNHLN 105 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSCCHHHHHHT----STTCCHHHHHHHHHHTTC
T ss_pred CCCCChHHHHHHHHHHHHhCcccHHHHHHH----cCCCCHHHHHHHHHHHhC
Confidence 468999999999999999999999999765 5799999999 9999875
No 33
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.58 E-value=4.8e-05 Score=69.11 Aligned_cols=47 Identities=28% Similarity=0.522 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVL 577 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~ 577 (586)
+.+||.+|.+.|+++|++||. +|+.|.+. |.+||..++| +|+.|+|.
T Consensus 110 ~~~WT~eEd~~L~~~~~~~g~-~W~~Ia~~----l~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 110 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS-CHHHHHTT----STTCCHHHHHHHHHTTTCC
T ss_pred ccCCChHHHHHHHHHHHHHCC-CHHHHHHH----CCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999996 99999864 6799999999 99999874
No 34
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=97.31 E-value=0.00018 Score=62.06 Aligned_cols=48 Identities=21% Similarity=0.449 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHhhhccCCCCCCcccch-hhhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGA---GRWSEIKRLAFASYSYRTSVDLK-VWTYIIVL 577 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGv---G~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~ 577 (586)
...||.+|...|+.++.+||. .+|..|-.. +.+||.-+.+ +|.+|+..
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~----vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARA----VEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH----STTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHH----cCCCCHHHHHHHHHHHHHH
Confidence 357999999999999999995 479999877 5689999999 99999753
No 35
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.23 E-value=0.00044 Score=54.65 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=42.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhh
Q 007868 521 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIV 576 (586)
Q Consensus 521 ~rRK~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K 576 (586)
+.|+...+||++|.+.+++|+.+||. +|..|... +.+||..++. .|....|
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~----l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASY----LERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHH----CTTSCHHHHHHHHHHHTC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHH----cCCCCHHHHHHHHHHhcC
Confidence 44667789999999999999999996 99999744 5789999999 6655443
No 36
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.00 E-value=0.00066 Score=63.65 Aligned_cols=50 Identities=26% Similarity=0.378 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHhhhccC----------CCCCCcccch-hhhhhhh
Q 007868 527 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFAS----------YSYRTSVDLK-VWTYIIV 576 (586)
Q Consensus 527 r~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~----------f~~RT~VDLK-KWRNL~K 576 (586)
..||.+|-..|+.||.+||.|+|..|+.++... +..++++.|+ +--.|++
T Consensus 135 ~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 135 IDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 469999999999999999999999999998322 2456778888 7555555
No 37
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.87 E-value=0.00084 Score=58.25 Aligned_cols=53 Identities=23% Similarity=0.243 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHhhhcc-CCCCCCcccch-hhhhhhhhhhc
Q 007868 527 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFA-SYSYRTSVDLK-VWTYIIVLGLA 580 (586)
Q Consensus 527 r~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~-~f~~RT~VDLK-KWRNL~K~s~~ 580 (586)
..||.||++.|.+-+++||. +|..|...+.. .+..||-.||| +|..+++.-..
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~ 85 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999998 99999988632 34689999999 99998875443
No 38
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.78 E-value=0.0012 Score=54.44 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHhhhccCCCCCCcccch-hhhhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGA---GRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLG 578 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGv---G~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s 578 (586)
...||.+|...|..++.+|+. .+|..|-... +||..+++ +|..|...-
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-----gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-----GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-----TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-----CCCHHHHHHHHHHHHHhc
Confidence 457999999999999999995 4799998772 69999999 999998763
No 39
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=96.67 E-value=0.00098 Score=66.42 Aligned_cols=49 Identities=16% Similarity=0.185 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCC-----hHHHHhhhccCCCCCCcccch-hhhhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAGR-----WSEIKRLAFASYSYRTSVDLK-VWTYIIVLG 578 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG~-----Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s 578 (586)
+.+||.||.+.|++.|++||..+ |+.|-.. +.+||.-.+| +|+++++..
T Consensus 8 k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~----LpGRT~nsIRnRw~~~L~~~ 62 (246)
T 1ign_A 8 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHY----VPNHTGNSIRHRFRVYLSKR 62 (246)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTT----STTSCHHHHHHHHHHTTGGG
T ss_pred CCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHH----cCCCCHHHHHHHHHHHHhhh
Confidence 45899999999999999998864 9999864 6799999999 999988764
No 40
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=96.35 E-value=0.0018 Score=65.03 Aligned_cols=31 Identities=45% Similarity=0.811 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHhhhc
Q 007868 527 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAF 557 (586)
Q Consensus 527 r~WT~eEveaLveGV~kyGvG~Wk~Il~~~~ 557 (586)
..|+.+|-.+|+.||.+||.|+|..|+.++.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~Dp~ 199 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDDPF 199 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCTT
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcCcc
Confidence 4699999999999999999999999999983
No 41
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.11 E-value=0.004 Score=51.90 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHHhhcCC---CChHHHHhhhccCCCCCCcccch-hhhhhhhhhhcccc
Q 007868 527 RAWTLSEVMKLVEGVSKYGA---GRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLGLAVAN 583 (586)
Q Consensus 527 r~WT~eEveaLveGV~kyGv---G~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s~~q~~ 583 (586)
..||.+|..+|..++..|+. ++|..|-.. +.+||.-+.+ +|.-|.+...-++|
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~----V~gKT~eE~~~hY~~l~~~~~s~~~ 65 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAA----VGSRSPEECQRKYMENPRGKGSQKH 65 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHH----TTTSCHHHHHHHHHHSSSSSCCCCS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHH----cCCCCHHHHHHHHHHHHhccccccc
Confidence 46999999999999999987 699999876 4579999999 99999887777766
No 42
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=95.75 E-value=0.0031 Score=52.18 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=41.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhc----CCC-----ChHHHHhhhccC-CCCCCcccch-hhhhhhhhhhc
Q 007868 524 KHHRAWTLSEVMKLVEGVSKY----GAG-----RWSEIKRLAFAS-YSYRTSVDLK-VWTYIIVLGLA 580 (586)
Q Consensus 524 K~rr~WT~eEveaLveGV~ky----GvG-----~Wk~Il~~~~~~-f~~RT~VDLK-KWRNL~K~s~~ 580 (586)
++...||.+|+.+|+.....+ ..| .|..|-...... | .||+...+ ||.||.+....
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~-~rs~~qC~~K~~nL~k~Yk~ 68 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGF-DRSPDMCTDKWRNLLKEFKK 68 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHH
Confidence 445789999999999988643 222 799996654211 3 79999999 99999996443
No 43
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=95.70 E-value=0.0081 Score=59.57 Aligned_cols=50 Identities=22% Similarity=0.408 Sum_probs=42.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhh
Q 007868 523 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVL 577 (586)
Q Consensus 523 RK~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~ 577 (586)
.+...+||++|.+.+++|+.+||. +|..|-+. ...||..+.| -|.+..|.
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~----VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDV----IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHH----HSSCCHHHHHHHHHHTTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHHH
Confidence 355678999999999999999998 89999876 4589999999 88877653
No 44
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.68 E-value=0.017 Score=46.07 Aligned_cols=50 Identities=22% Similarity=0.460 Sum_probs=39.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccchhhhhhhh
Q 007868 523 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKVWTYIIV 576 (586)
Q Consensus 523 RK~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLKKWRNL~K 576 (586)
+.....||++|.+...+|+.+||. +|..|.++ .+..||..|+.++--+.|
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~---~v~~Kt~~~~v~fYY~wK 55 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKE---LLPNKETGELITFYYYWK 55 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHH---SCTTSCHHHHHHHHHHHH
T ss_pred CcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHH---HcCCCcHHHHHHHHhccc
Confidence 444578999999999999999999 89999875 256899999984433443
No 45
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.59 E-value=0.01 Score=51.60 Aligned_cols=55 Identities=24% Similarity=0.251 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCChHHHHhhhcc-CCCCCCcccch-hhhhhhhhhhcccc
Q 007868 528 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFA-SYSYRTSVDLK-VWTYIIVLGLAVAN 583 (586)
Q Consensus 528 ~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~-~f~~RT~VDLK-KWRNL~K~s~~q~~ 583 (586)
.||.+|+..|.+-+++|+. +|--|...+.. .+..||-=||| +|-.+++.-....+
T Consensus 32 ~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 32 AWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp TBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 6999999999999999988 99999988632 35689999999 99888775444333
No 46
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=94.51 E-value=0.06 Score=43.81 Aligned_cols=43 Identities=19% Similarity=0.424 Sum_probs=37.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch
Q 007868 523 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK 569 (586)
Q Consensus 523 RK~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK 569 (586)
|+....||++|.....+|+.+||. +|..|.++ .+..||.-|+-
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~---~v~~Kt~~~~v 47 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGK-DFNDIRQD---FLPWKSLTSII 47 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHT---TCSSSCHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHH---HcCCCCHHHHH
Confidence 566789999999999999999999 89999864 25689999988
No 47
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.43 E-value=0.055 Score=44.17 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=42.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCC--ChHHHHhhhccCCCCCCcccch----hhhhhhh
Q 007868 522 RRKHHRAWTLSEVMKLVEGVSKYGAG--RWSEIKRLAFASYSYRTSVDLK----VWTYIIV 576 (586)
Q Consensus 522 rRK~rr~WT~eEveaLveGV~kyGvG--~Wk~Il~~~~~~f~~RT~VDLK----KWRNL~K 576 (586)
.+|++-.||+|.-+..+++|+.+|.. .|+.|++... ..+.|..++| |||..++
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~--v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMN--VDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Confidence 36778899999999999999999954 3899998753 3567877777 7776554
No 48
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.97 E-value=0.042 Score=51.38 Aligned_cols=52 Identities=19% Similarity=0.363 Sum_probs=41.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcC--CCChHHHHhhhccCCCCCCcccch-hhhhhhh
Q 007868 523 RKHHRAWTLSEVMKLVEGVSKYG--AGRWSEIKRLAFASYSYRTSVDLK-VWTYIIV 576 (586)
Q Consensus 523 RK~rr~WT~eEveaLveGV~kyG--vG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K 576 (586)
|...+.||..|...|+.++.+|| -++|..|..+. .+..+|.-+++ =.+.+..
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da--~L~~Ks~~~v~~y~~~f~~ 58 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDA--ELVDKSETDLRRLGELVHN 58 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHT--TCTTSCHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHh--ccCCCCHHHHHHHHHHHHH
Confidence 45567899999999999999999 58999999983 47889999999 5555444
No 49
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.91 E-value=0.021 Score=58.30 Aligned_cols=52 Identities=25% Similarity=0.284 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHhhh-------cc-CCCCCCcccch-hhhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGA---GRWSEIKRLA-------FA-SYSYRTSVDLK-VWTYIIVL 577 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGv---G~Wk~Il~~~-------~~-~f~~RT~VDLK-KWRNL~K~ 577 (586)
.+.||++|-..|+-++.+||. |+|..|+.+. |+ .|..||++.|. +=..|+++
T Consensus 212 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~ 275 (304)
T 1ofc_X 212 GKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITL 275 (304)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 358999999999999999999 9999997443 22 25889999999 98888875
No 50
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=92.18 E-value=0.068 Score=56.11 Aligned_cols=53 Identities=17% Similarity=0.195 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHhhh-------cc-CCCCCCcccch-hhhhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKYGA---GRWSEIKRLA-------FA-SYSYRTSVDLK-VWTYIIVLG 578 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGv---G~Wk~Il~~~-------~~-~f~~RT~VDLK-KWRNL~K~s 578 (586)
.+.||.+|-..|+-++.+||. |+|..|+.+- |+ .|..||+..|. +=..|+++-
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~I 292 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCL 292 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 357999999999999999999 9999997663 22 26889999999 999998753
No 51
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=91.24 E-value=0.19 Score=54.25 Aligned_cols=45 Identities=24% Similarity=0.496 Sum_probs=37.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhh
Q 007868 524 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTY 573 (586)
Q Consensus 524 K~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRN 573 (586)
+..-+||.+|.+.+++|+.+||. +|..|-.. ...||..+.| -|.+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~----VgTKT~~Qvk~fy~~ 423 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDV----IGNKSVVQVKNFFVN 423 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHH----HSSCCHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH----hCCCCHHHHHHHHHH
Confidence 44578999999999999999998 99999876 3478888888 4433
No 52
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=85.44 E-value=0.45 Score=40.71 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=36.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccchhh
Q 007868 523 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKVW 571 (586)
Q Consensus 523 RK~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLKKW 571 (586)
|+....||++|.+.+.+|...||. +|..|.. .+..||..++-.|
T Consensus 40 r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~----~l~~Kt~~~cV~~ 83 (94)
T 4a69_C 40 RQVMNMWSEQEKETFREKFMQHPK-NFGLIAS----FLERKTVAECVLY 83 (94)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHSTT-CHHHHHH----TCTTCCHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCC-CHHHHHH----HcCCCCHHHHHHH
Confidence 456678999999999999999998 8999943 2678998887633
No 53
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=84.17 E-value=1 Score=45.26 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcC--CCChHHHHhhhccCCCCCCcccch-hhhhhhhhh
Q 007868 525 HHRAWTLSEVMKLVEGVSKYG--AGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLG 578 (586)
Q Consensus 525 ~rr~WT~eEveaLveGV~kyG--vG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s 578 (586)
++..||..|+..|+.++.+|| .++|..|..+ ..+..+...+|+ -+..|+..+
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~d--A~L~~ks~~~i~~~~~~li~~c 56 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIAD--GTLPVKSFEKYGETYDEMMEAA 56 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHT--TSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh--cccccCCHHHHHHHHHHHHHHH
Confidence 356899999999999999999 5899999988 468889999999 787776643
No 54
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=84.07 E-value=0.35 Score=40.71 Aligned_cols=40 Identities=25% Similarity=0.461 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCC---ChHHHHhhhccCCCCCCcccch
Q 007868 526 HRAWTLSEVMKLVEGVSKYGAG---RWSEIKRLAFASYSYRTSVDLK 569 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGvG---~Wk~Il~~~~~~f~~RT~VDLK 569 (586)
-..||.+|-.+|..++.+|..+ +|.+|-.. +.+||.-+++
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~----VpGKT~eEVk 62 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQY----VKGRTPEEVK 62 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGG----SCSSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH----cCCCCHHHHH
Confidence 3479999999999999999987 99999765 5579998887
No 55
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=76.92 E-value=2.3 Score=33.61 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHhhc--------CCCChHHHHhhhccCCCCCCcccch-hhhhhhh
Q 007868 526 HRAWTLSEVMKLVEGVSKY--------GAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIV 576 (586)
Q Consensus 526 rr~WT~eEveaLveGV~ky--------GvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K 576 (586)
|.+||.||-.+|++=|.+| |.--|+.|-+. .+..+|---.+ +|++-++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~---~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKS---SLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHS---CSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHh---HCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 55679988762 25789999999 9987543
No 56
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=67.84 E-value=6.8 Score=34.33 Aligned_cols=59 Identities=15% Similarity=0.199 Sum_probs=49.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCC--CChHHHHhhhccCCCCCCcccch-hhhhhhhhhhccccc
Q 007868 522 RRKHHRAWTLSEVMKLVEGVSKYGA--GRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLGLAVANN 584 (586)
Q Consensus 522 rRK~rr~WT~eEveaLveGV~kyGv--G~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s~~q~~n 584 (586)
....-..||.+|-..++...++-|. -.|+.|-.. +.+|+.-+++ +|+.|++.-+.++-|
T Consensus 29 ~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~----L~Nks~nqV~~RFq~Lm~Lf~~~~~~ 90 (95)
T 1ug2_A 29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQ----LGNKTPVEVSHRFRELMQLFHTACES 90 (95)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHCSSS
T ss_pred CCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHH----HccCCHHHHHHHHHHHHHHHHHHhcc
Confidence 3455678999999999999999987 478887655 5689999999 999999988877654
No 57
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=29.91 E-value=11 Score=40.86 Aligned_cols=37 Identities=16% Similarity=0.381 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccc
Q 007868 527 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDL 568 (586)
Q Consensus 527 r~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDL 568 (586)
..||.+|...+.+|+.+||. +|..|... +..||.-++
T Consensus 190 d~WT~eE~~lFe~al~~yGK-dF~~I~~~----lp~Ksv~e~ 226 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGK-TFHRIQQM----LPDKSIASL 226 (482)
T ss_dssp ------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCc-cHHHHHHH----cCCCCHHHH
Confidence 47999999999999999999 79888743 455665554
No 58
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=35.07 E-value=12 Score=31.32 Aligned_cols=50 Identities=10% Similarity=0.111 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCC--CChHHHHhhhccCCCCCCcccch-hhhhhhhhhhc
Q 007868 526 HRAWTLSEVMKLVEGVSKYGA--GRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLGLA 580 (586)
Q Consensus 526 rr~WT~eEveaLveGV~kyGv--G~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s~~ 580 (586)
-..||.+|-..++.-+++-|. -.|+.|-.. + +||+-+++ +|+.|++.-+.
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~----L-nks~~QV~~RF~~Lm~Lf~k 66 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAK----L-DKNPNQVSERFQQLMKLFEK 66 (70)
Confidence 457999999999999999886 367666533 5 79999999 99999986543
No 59
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.11 E-value=36 Score=31.11 Aligned_cols=55 Identities=16% Similarity=0.300 Sum_probs=36.1
Q ss_pred cccccchhhh-HHHHHHhhhhhhhhhhccCCCCCCCceee------cCCCccccccccccchhhhc
Q 007868 113 AGKLNTHLES-IEEMLTKAKQEESHLLACGSPDHSSTYVL------VDGQCSDQHDTLRGIDEKLQ 171 (586)
Q Consensus 113 ~~kl~~~le~-~~~ml~~v~~~~~l~~~~~~p~~s~~~~~------i~~~cs~~hd~~~~~~~k~~ 171 (586)
..+++.+.+. +.+|+.. ..++.++-||.++-. |+. |=.+|+.+|..|-.-.-+|.
T Consensus 9 ~~~~~e~~~~~l~~L~~~--p~N~~CaDCga~~P~--WaS~n~GvfiC~~CsgiHR~LG~hiS~Vk 70 (141)
T 2crr_A 9 AQKLNEQHQLILSKLLRE--EDNKYCADCEAKGPR--WASWNIGVFICIRCAGIHRNLGVHISRVK 70 (141)
T ss_dssp TTTTTTCHHHHHHHHHHS--GGGSSCSSSCCSSCC--SEETTTTEECCHHHHHHHHHHCTTTCCCB
T ss_pred HHHHHHHHHHHHHHHHhC--ccCCcCCCCCCCCCC--eEEeccCeEEhhhhhHhHhcCCCCCCeee
Confidence 4455555543 3444444 688999999999876 444 34689999999864344554
No 60
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=20.94 E-value=85 Score=31.53 Aligned_cols=28 Identities=4% Similarity=-0.027 Sum_probs=23.0
Q ss_pred CChHHHHhhhccCCCCCCcccch-hhhhhhhhh
Q 007868 547 GRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLG 578 (586)
Q Consensus 547 G~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s 578 (586)
+.|+.|-+. |..||.+-.+ +||.+++..
T Consensus 172 ~~fk~ia~~----~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 172 EFFKHFAEE----HAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp THHHHHHHH----TTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHH----CCCCChhhHHHHHHHHHhhc
Confidence 368888766 6799999999 999988754
No 61
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=20.51 E-value=60 Score=33.25 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=34.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch
Q 007868 524 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK 569 (586)
Q Consensus 524 K~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK 569 (586)
..--.||..+-.+++.|+.+||...|..|-... .+.|.-+.+
T Consensus 108 eGF~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev----~~Kt~eEV~ 149 (304)
T 1ofc_X 108 QGFTAWTKRDFNQFIKANEKYGRDDIDNIAKDV----EGKTPEEVI 149 (304)
T ss_dssp SSCTTCCHHHHHHHHHHHHHHCTTCHHHHTTSS----TTCCHHHHH
T ss_pred hhhcccCHHHHHHHHHHHHHhCHHHHHHHHHHh----cCCCHHHHH
Confidence 344579999999999999999999999998663 467777766
Done!