BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007871
         (586 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
 gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  799 bits (2064), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/580 (64%), Positives = 473/580 (81%), Gaps = 1/580 (0%)

Query: 5   AAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQ 64
           +  K  LKNPL+SLLQ SKT++ ILQI AQL T +LI++ F  S+LL S+ S  TLN++ 
Sbjct: 4   STPKLQLKNPLLSLLQKSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVS-KTLNVNY 62

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           AE +F QI+QPN+++ NTM++ YT+SS P++AL FY  M+RKGLL DNYTYPFVLKACG 
Sbjct: 63  AELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGA 122

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           + GL+EG  + GE VK GF  DVFVVNGLI MY +CG  G AR+VF+G   KDLVSWN +
Sbjct: 123 MCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSM 182

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
           L G+V CGEM  A+ +FDEMP++D +SWSIMIDGY KK G+++ AR+ F+ MP +DL+SW
Sbjct: 183 LGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSW 242

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           NSMIDGYAK+G++  A+++F++M ++NV SWSIMIDGYAQH + KEAL LFR+MLCQG++
Sbjct: 243 NSMIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIK 302

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           PD +SV+GA+SAC+Q+GALD G+WIH++MKR+R+ +D++VQTAL+DMY+KCGS DEARRI
Sbjct: 303 PDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRI 362

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F SM ++NV+S+NVMI GLGMNGFG+EAL+CF QME E IP DDL+FLGVL+ACSH+ L 
Sbjct: 363 FNSMPERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFLGVLMACSHANLV 422

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
           TEG  IF  MK    +EPKLEHY CLVDLL RAG+L+Q  NI++SMPMKPN ALWG+LLL
Sbjct: 423 TEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLL 482

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           ACR HQNVTLAE+VVE L ELKADD G+YVL+SNIYAD GMWE  LRIRK+M++RK+KK+
Sbjct: 483 ACRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKD 542

Query: 545 TGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTI 584
            GRSVIE+DGN++EFVSGE   +  EE+ELVI S  K  +
Sbjct: 543 IGRSVIEVDGNVEEFVSGEKSHILREEIELVIWSLAKMAM 582


>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
          Length = 585

 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/580 (63%), Positives = 471/580 (81%), Gaps = 1/580 (0%)

Query: 5   AAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQ 64
           +  K  LKNPL+SLLQ SKT++ ILQI AQL T +LI++ F  S+LL S+ S  TLN++ 
Sbjct: 4   STPKLQLKNPLLSLLQXSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVS-KTLNVNY 62

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           AE +F QI+QPN+++ NTM++ YT+SS P++AL FY  M++KGLL DNYTYPFVLKACG 
Sbjct: 63  AELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGA 122

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           + GL+EG  + GE VK GF  DVFVVNGLI MY +CG  G AR+VF+G   KDLVSWN +
Sbjct: 123 MCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSM 182

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
           L G+V CGEM  A+ +FDEMP++D +SWSIMIDGY KK G+++ AR+ F+ MP +DL+SW
Sbjct: 183 LGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSW 242

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           NSMIDGYAK+G++  A+++FB+M ++NV SWSIMIDGYA H + KEAL LFR+MLCQG++
Sbjct: 243 NSMIDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIK 302

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           PD +SV+GA+SAC+Q+GALD G+WIH++MKR+R+ +D++VQTAL+DMY+KCGS DEAR I
Sbjct: 303 PDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXI 362

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F SM ++NV+S+NVMI GLGMNGFG+EAL+CF QME E IP DDL+FLGVL+ACSH+ L 
Sbjct: 363 FNSMPERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMDDLLFLGVLMACSHANLV 422

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
           TEG  IF  MK    +EPKLEHY CLVDLL RAG+L+Q  NI++SMPMKPN ALWG+LLL
Sbjct: 423 TEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLL 482

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           ACR HQNVTLAE+VVE L ELKADD G+YVL+SNIYAD GMWE  LRIRK+M++RK+KK+
Sbjct: 483 ACRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKD 542

Query: 545 TGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTI 584
            GRSVIE+DGN++EFVSGE   +  EE+ELVI S  K  +
Sbjct: 543 IGRSVIEVDGNVEEFVSGEKSHILREEIELVIWSLAKMAM 582


>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
 gi|194692242|gb|ACF80205.1| unknown [Zea mays]
 gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
          Length = 590

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 282/571 (49%), Positives = 387/571 (67%), Gaps = 12/571 (2%)

Query: 15  LVSLLQISKTTTHILQILAQL-TTNDLITEPFTLS-QLLMSLTS-PNTLNMDQAERLFNQ 71
           L+S L+  ++ +H LQ  A L T+  L   P  LS  LL++L S P+   +  A+ +F +
Sbjct: 13  LLSRLRACRSASHALQCHALLLTSGHLAASPLRLSNHLLLALASVPSAAAL--ADVVFAR 70

Query: 72  IYQP---NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           +  P   + +  NT IR +   + P+ AL ++  M+R G+  D YT+P VLKACG   G 
Sbjct: 71  LPLPAARDPFAWNTAIRLHA-PARPRAALLYFARMRRCGVRPDAYTFPAVLKACGCAPGC 129

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE--GSEIKDLVSWNLVLR 186
             G  +H E V+ G   D+F VN LI  Y +   +   R VF+  G   +DLVSWN ++ 
Sbjct: 130 RAGLLVHAEAVRRGLAADLFTVNALISFYCRILDIRSGRKVFDEAGGVSRDLVSWNSMVA 189

Query: 187 GFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKG-DISSARILFEHMPIKDLISWN 245
           G+V CGEMG A+E+FDEMPQKD  SW+ +IDGY K+ G  +  AR LF+ MP +DL+ WN
Sbjct: 190 GYVGCGEMGLAQEMFDEMPQKDTFSWATLIDGYGKQGGAGVDRARELFDQMPERDLVCWN 249

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           SMIDGYA+ G +  A+ LF EMPERNV SWSI+IDG+   G  KEAL  F+ ML  G+RP
Sbjct: 250 SMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVSCGEAKEALEYFQSMLRCGLRP 309

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D I+ +GA+SACAQ+GAL+ G+W+H ++++ ++  D++VQTALIDMY+KCG LD A  IF
Sbjct: 310 DRIAAVGAVSACAQLGALEQGRWLHSYLEKKKLLSDVVVQTALIDMYVKCGCLDLAMLIF 369

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
            SM +++V+++NVMI GLG +GFG +A+  F +ME E +  DDL  LG+L AC+H+GL +
Sbjct: 370 ESMAERSVVTWNVMIVGLGTHGFGLDAVTLFHRMEAESVAVDDLSVLGMLTACTHAGLVS 429

Query: 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
           EG  IF  MK+  GI+PK+EHY  LVDLL RAG L+QA + +E+MPM+P   LWG+LL A
Sbjct: 430 EGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELWGSLLAA 489

Query: 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
           CR+H  V LAE+ VE L +L ADD G+YVLLSNIYAD GMW   LRIRK+M    ++K+ 
Sbjct: 490 CRSHSCVELAELSVERLADLGADDSGVYVLLSNIYADEGMWGDVLRIRKLMSDEGMRKDI 549

Query: 546 GRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
           GRSVIE+DG I EFV+G    +  +E+ L++
Sbjct: 550 GRSVIEVDGEIHEFVNGVGSYICKDEMYLML 580


>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
 gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
          Length = 590

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 274/574 (47%), Positives = 381/574 (66%), Gaps = 8/574 (1%)

Query: 15  LVSLLQISKTTTHILQILAQL-TTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIY 73
           L+S L+  ++ +H +Q  A L T+  L   P  LS LL+   +        A+ +F ++ 
Sbjct: 13  LLSRLRACRSASHAIQCHALLLTSGHLAASPLRLSNLLLLAIASVPGAAPLADAVFARLP 72

Query: 74  QP---NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
           +P   + +  NT IR +     P+ AL ++  M+  G+  D YT+P VLKACG   G   
Sbjct: 73  EPAARDPFPWNTAIRLHA-PGRPRAALLYFARMRSCGVRPDAYTFPAVLKACGCAPGCRA 131

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE--GSEIKDLVSWNLVLRGF 188
           G  +H E V+ G   D+F VN LI  Y +       R VF+  G   +DLVSWN ++ G+
Sbjct: 132 GLLVHAEAVRRGLGADLFTVNALISFYCRILDCISGRKVFDEAGGVSRDLVSWNSMVAGY 191

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKG-DISSARILFEHMPIKDLISWNSM 247
           V CGEMG A+E+FDEMPQ+DA SW  +IDGY K+ G  +  AR LF+ M  +DL+ WNSM
Sbjct: 192 VGCGEMGLAQELFDEMPQRDAFSWGALIDGYGKQGGAGVDRARELFDQMTERDLVCWNSM 251

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           IDGYA+ G +  A+ LF EMPERNV SWSI+IDG+ + G  KEAL  F+ ML  G+RPD 
Sbjct: 252 IDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKEALEHFQSMLRCGIRPDR 311

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           ++ +GA+SACAQ+GAL+ G+W+H ++++ ++  D++VQTALIDMYMKCG +D A  IF S
Sbjct: 312 VAAVGAVSACAQLGALEQGRWLHSYLEKKKVLSDVVVQTALIDMYMKCGRMDLAMLIFES 371

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           M +++V+++NVMI GLG +G+G +A+  F +ME E +  DDL  L +L AC+H+GL +EG
Sbjct: 372 MPERSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVAVDDLSLLAMLTACTHAGLVSEG 431

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
             IF  MK+  GI+PK+EHY  LVDLL RAG L+QA + +E+MPM+P   LWG+LL ACR
Sbjct: 432 LEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELWGSLLAACR 491

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
           +H  V LAE+ VE L  L ADD G+YVLLSNIYAD GMW   LRIRK+M    ++K+ GR
Sbjct: 492 SHSCVELAELSVERLANLGADDSGVYVLLSNIYADEGMWGDVLRIRKLMSDEGMRKDIGR 551

Query: 548 SVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
           SVIE+DG I EFV+G    + ++E+ L++ +  K
Sbjct: 552 SVIEVDGEIHEFVNGGGSHLCTDEIYLMLWNLSK 585


>gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group]
 gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group]
          Length = 589

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 272/569 (47%), Positives = 381/569 (66%), Gaps = 9/569 (1%)

Query: 15  LVSLLQISKTTTHILQILAQL-TTNDLITEP---FTLSQLLMSLTSPNTLNMDQAERLFN 70
           L+S L+   + +H LQ  A L T+  L   P     L  L ++  S +    D A+ +F 
Sbjct: 13  LLSRLRACSSASHALQCHALLLTSGHLAASPARLSNLLLLALASASASPSAADHADSVFA 72

Query: 71  QIYQP---NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
            + +    + +  NT++R +  +S P+++L ++  M+R  +  D YT+P VLKACG   G
Sbjct: 73  HLAEEASRHAFPWNTLVRLHAAAS-PRRSLLYFSRMRRAAVAPDAYTFPAVLKACGCAPG 131

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
              G  +HGE V+ G   D+F  N LI  Y + G     R VF+   ++DLVSWN ++ G
Sbjct: 132 CRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHG-VRDLVSWNSMVAG 190

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM 247
           +V CGE+  A+++FDEM Q+DA SW+ MIDGY +  G +  AR LF+ MP +DL+ WNSM
Sbjct: 191 YVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSM 250

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           IDGYA+ G +  A+ LF EMPERNV SWSI+IDGY + G P EAL  F+ ML  G++PD 
Sbjct: 251 IDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDR 310

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           ++ +GA++ACAQ+GAL+ G+W+H ++++ ++  D++VQTALIDMY+KCG LD A+ IF S
Sbjct: 311 VAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFES 370

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           M KK+V+++NVMI GLG +G+G +A+K F QMETE  P DDL  L VL +C+H+GL +EG
Sbjct: 371 MPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSCTHAGLVSEG 430

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
             IF  M++  G+EPK+EHY  L+DLL RAG ++QA N +E+MPM+P   LWG+LL +CR
Sbjct: 431 LGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPELWGSLLASCR 490

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
           +H+ V LAE+ VE L  L ADD G+YVLLSNIYAD GMW+   RIRK+M    +KK  GR
Sbjct: 491 SHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEGMKKNIGR 550

Query: 548 SVIEIDGNIKEFVSGEIFDVQSEELELVI 576
           SVIE+DG I EFV+G       EE+ L +
Sbjct: 551 SVIEVDGQIHEFVNGGSSHPHKEEIYLTL 579


>gi|218189594|gb|EEC72021.1| hypothetical protein OsI_04901 [Oryza sativa Indica Group]
          Length = 589

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 272/569 (47%), Positives = 381/569 (66%), Gaps = 9/569 (1%)

Query: 15  LVSLLQISKTTTHILQILAQL-TTNDLITEP---FTLSQLLMSLTSPNTLNMDQAERLFN 70
           L+S L+   + +H LQ  A L T+  L   P     L  L ++  S +    D A+ +F 
Sbjct: 13  LLSRLRACSSASHALQCHALLLTSGHLAASPARLSNLLLLALASASASPSAADHADSVFA 72

Query: 71  QIYQP---NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
            + +    + +  NT++R +  +S P+++L ++  M+R  +  D YT+P VLKACG   G
Sbjct: 73  HLAEEASRHAFPWNTLVRLHAAAS-PRRSLLYFSRMRRVAVAPDAYTFPAVLKACGCAPG 131

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
              G  +HGE V+ G   D+F  N LI  Y + G     R VF+   ++DLVSWN ++ G
Sbjct: 132 CRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHG-VRDLVSWNSMVAG 190

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM 247
           +V CGE+  A+++FDEM Q+DA SW+ MIDGY +  G +  AR LF+ MP +DL+ WNSM
Sbjct: 191 YVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSM 250

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           IDGYA+ G +  A+ LF EMPERNV SWSI+IDGY + G P EAL  F+ ML  G++PD 
Sbjct: 251 IDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLSCGIKPDR 310

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           ++ +GA++ACAQ+GAL+ G+W+H ++++ ++  D++VQTALIDMY+KCG LD A+ IF S
Sbjct: 311 VAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFES 370

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           M KK+V+++NVMI GLG +G+G +A+K F QMETE  P DDL  L VL +C+H+GL +EG
Sbjct: 371 MPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSVLAVLTSCTHAGLVSEG 430

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
             IF  M++  G+EPK+EHY  L+DLL RAG ++QA N +E+MPM+P   LWG+LL +CR
Sbjct: 431 LGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPELWGSLLASCR 490

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
           +H+ V LAE+ VE L  L ADD G+YVLLSNIYAD GMW+   RIRK+M    +KK  GR
Sbjct: 491 SHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEGMKKNIGR 550

Query: 548 SVIEIDGNIKEFVSGEIFDVQSEELELVI 576
           SVIE+DG I EFV+G       EE+ L +
Sbjct: 551 SVIEVDGQIHEFVNGGSSHPHKEEIYLTL 579


>gi|125573086|gb|EAZ14601.1| hypothetical protein OsJ_04525 [Oryza sativa Japonica Group]
          Length = 616

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 269/555 (48%), Positives = 376/555 (67%), Gaps = 9/555 (1%)

Query: 15  LVSLLQISKTTTHILQILAQL-TTNDLITEP---FTLSQLLMSLTSPNTLNMDQAERLFN 70
           L+S L+   + +H LQ  A L T+  L   P     L  L ++  S +    D A+ +F 
Sbjct: 13  LLSRLRACSSASHALQCHALLLTSGHLAASPARLSNLLLLALASASASPSAADHADSVFA 72

Query: 71  QIYQP---NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
            + +    + +  NT++R +  +S P+++L ++  M+R  +  D YT+P VLKACG   G
Sbjct: 73  HLAEEASRHAFPWNTLVRLHAAAS-PRRSLLYFSRMRRAAVAPDAYTFPAVLKACGCAPG 131

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
              G  +HGE V+ G   D+F  N LI  Y + G     R VF+   ++DLVSWN ++ G
Sbjct: 132 CRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHG-VRDLVSWNSMVAG 190

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM 247
           +V CGE+  A+++FDEM Q+DA SW+ MIDGY +  G +  AR LF+ MP +DL+ WNSM
Sbjct: 191 YVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSM 250

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           IDGYA+ G +  A+ LF EMPERNV SWSI+IDGY + G P EAL  F+ ML  G++PD 
Sbjct: 251 IDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDR 310

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           ++ +GA++ACAQ+GAL+ G+W+H ++++ ++  D++VQTALIDMY+KCG LD A+ IF S
Sbjct: 311 VAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFES 370

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           M KK+V+++NVMI GLG +G+G +A+K F QMETE  P DDL  L VL +C+H+GL +EG
Sbjct: 371 MPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSCTHAGLVSEG 430

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
             IF  M++  G+EPK+EHY  L+DLL RAG ++QA N +E+MPM+P   LWG+LL +CR
Sbjct: 431 LGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPELWGSLLASCR 490

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
           +H+ V LAE+ VE L  L ADD G+YVLLSNIYAD GMW+   RIRK+M    +KK  GR
Sbjct: 491 SHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEGMKKNIGR 550

Query: 548 SVIEIDGNIKEFVSG 562
           SVIE+DG I EFV+G
Sbjct: 551 SVIEVDGQIHEFVNG 565


>gi|357126462|ref|XP_003564906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 582

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 264/571 (46%), Positives = 371/571 (64%), Gaps = 13/571 (2%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIY- 73
           L+S L+   + +H LQ  A L T+  +         L+ L   +   +  A+ +F ++  
Sbjct: 12  LLSRLRACTSASHALQCHALLLTSGHLAASPLRLSNLLLLALASASAVSHADAVFARLLP 71

Query: 74  ---QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC--GVLMGL 128
                + +  NT+IR +  +S P+ AL+++  M+R  +  D YT+P VLKAC  GVL   
Sbjct: 72  GPASRDAFPWNTLIRLHAPAS-PRNALAYFACMRRAAVEPDAYTFPAVLKACACGVL--- 127

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
             G  +H E V+ G   D+F  N L+  Y + G     R VF+    +DLVSWN ++ G+
Sbjct: 128 --GLPVHAEAVRTGMDGDLFTRNALVSFYCRIGDCRSGRKVFDHGA-RDLVSWNSMVAGY 184

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMI 248
           V CGE+  A+E+FD MP +DA SW+ MID Y K+ G +  AR LF+  P +DL+ W SMI
Sbjct: 185 VACGELELAQELFDGMPLRDAFSWATMIDAYGKRSGGVDRARELFDETPNRDLVCWCSMI 244

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
           DGYA+ G +  A+ LF EMPERNV SWSI++DGY + G P EAL LF+ ML  G++PD +
Sbjct: 245 DGYARQGRMDEARALFEEMPERNVISWSIVVDGYVRCGEPSEALELFQRMLRCGIKPDRV 304

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           + +GA +ACAQ+GAL+ G+W+H ++++ ++  D++VQTALIDMYMKCG LD  + IF SM
Sbjct: 305 AAVGAFTACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYMKCGRLDLGKLIFESM 364

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
             K+V+++NVMI GLG +  G  A+K F QME EG P DDL  L VL AC+H+GL +EG 
Sbjct: 365 PDKSVVTWNVMIIGLGTHSCGLHAVKLFYQMEAEGAPIDDLSVLAVLTACTHAGLISEGL 424

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
            IF  M++  G++PK+EHY  LVDLL RAG L+ A + +E+MPM+P   LWG+LL ACR+
Sbjct: 425 GIFHRMRKDFGMDPKVEHYGALVDLLGRAGHLDHARHAIETMPMEPTPELWGSLLAACRS 484

Query: 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRS 548
           H+ V LAE+ VE L  L ADD G+YVLLSNIYAD GMW+   RIR++M    +KK+ GRS
Sbjct: 485 HRCVELAELSVERLASLGADDFGVYVLLSNIYADEGMWDGVFRIRRLMSAEGMKKDIGRS 544

Query: 549 VIEIDGNIKEFVSGEIFDVQSEELELVIQSF 579
           VIE+DG   EFV+G       +E+ L++Q+ 
Sbjct: 545 VIEVDGQTHEFVNGGSSHSCKDEVHLMLQNL 575


>gi|215741011|dbj|BAG97506.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 483

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/474 (52%), Positives = 335/474 (70%), Gaps = 1/474 (0%)

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           M+R  +  D YT+P VLKACG   G   G  +HGE V+ G   D+F  N LI  Y + G 
Sbjct: 1   MRRAAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGD 60

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK 222
               R VF+   ++DLVSWN ++ G+V CGE+  A+++FDEM Q+DA SW+ MIDGY + 
Sbjct: 61  CRSGRKVFDHG-VRDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEM 119

Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
            G +  AR LF+ MP +DL+ WNSMIDGYA+ G +  A+ LF EMPERNV SWSI+IDGY
Sbjct: 120 AGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGY 179

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
            + G P EAL  F+ ML  G++PD ++ +GA++ACAQ+GAL+ G+W+H ++++ ++  D+
Sbjct: 180 VRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDV 239

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
           +VQTALIDMY+KCG LD A+ IF SM KK+V+++NVMI GLG +G+G +A+K F QMETE
Sbjct: 240 VVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETE 299

Query: 403 GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
             P DDL  L VL +C+H+GL +EG  IF  M++  G+EPK+EHY  L+DLL RAG ++Q
Sbjct: 300 RAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQ 359

Query: 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522
           A N +E+MPM+P   LWG+LL +CR+H+ V LAE+ VE L  L ADD G+YVLLSNIYAD
Sbjct: 360 ARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYAD 419

Query: 523 AGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
            GMW+   RIRK+M    +KK  GRSVIE+DG I EFV+G       EE+ L +
Sbjct: 420 EGMWDDVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNGGSSHPHKEEIYLTL 473



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 144/317 (45%), Gaps = 50/317 (15%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQ-SSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +D A+ LF+++ Q + +   TMI GY + +    +A   +  M  +              
Sbjct: 91  VDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDR-------------- 136

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
                                    D+   N +I  Y++ G M  AR +FE    ++++S
Sbjct: 137 -------------------------DLVCWNSMIDGYARHGRMDEARVLFEEMPERNVIS 171

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQ---KDAISWSIMIDGYRKKKGDISSARILFEHMP 237
           W++V+ G+V  GE  +A E F  M +   K     ++       + G +   R L  ++ 
Sbjct: 172 WSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLE 231

Query: 238 IK----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
            K    D++   ++ID Y K G L  A+ +F  MP+++V +W++MI G   HG   +A+ 
Sbjct: 232 KKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIK 291

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ--TALIDM 351
           LF +M  +    D +S++  +++C   G +  G  I   M++  + ++  V+   ALID+
Sbjct: 292 LFNQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKD-LGLEPKVEHYGALIDL 350

Query: 352 YMKCGSLDEARRIFYSM 368
             + G +D+AR    +M
Sbjct: 351 LGRAGRVDQARNTIETM 367


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/558 (41%), Positives = 359/558 (64%), Gaps = 8/558 (1%)

Query: 26  THILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIR 85
            HI ++ AQ+   +L  + +   +L+ + +  + +N+  A  +FNQI  PN +++NT+IR
Sbjct: 37  NHIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNL--AVNVFNQIQDPNVHLYNTLIR 94

Query: 86  GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC 145
            + Q+S   KA + + +M++ GL  DN+TYPF+LKAC     L     IH  V K GF  
Sbjct: 95  AHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFG 154

Query: 146 DVFVVNGLIGMYSKCGHMGC--ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDE 203
           D+FV N LI  YSKCG +G   A  +F     KDLVSWN ++ G V+ G++G+AR++FDE
Sbjct: 155 DLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDE 214

Query: 204 MPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQL 263
           M ++DA+SW+ ++DGY K  G++S A  LFE MP ++++SW++M+ GY K GD+  A+ L
Sbjct: 215 MAERDAVSWNTILDGYVKA-GEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARML 273

Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL 323
           F++MP +N+ +W+I+I G+A+ G  KEA  L+ +M   G++PD  +++  ++ACA+ G L
Sbjct: 274 FDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLL 333

Query: 324 DLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383
            LGK +H  +K+ RI   + V  AL+DMY KCG +D+A  IF  M+ ++++S+N M+ GL
Sbjct: 334 VLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGL 393

Query: 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443
            M+G GE+A++ F++M+ EG   D +  + +L AC+H+G   +G   F SM+R  GI P 
Sbjct: 394 AMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPH 453

Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLV 503
           +EHY C++DLL R G LE+A  +V+SMPM+PN  +WGTLL ACR H  V LAE V++ L+
Sbjct: 454 IEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLI 513

Query: 504 ELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
            L+  D G Y +LSNI+A AG W     +R  M+   ++K +G S IE+D  + EF    
Sbjct: 514 TLEQSDPGNYSMLSNIFAAAGDWNSVANMRLQMKSTGVQKPSGASSIELDDEVHEFT--- 570

Query: 564 IFDVQSEELELVIQSFVK 581
           +FD    E + + Q  VK
Sbjct: 571 VFDKSHPETDKIYQILVK 588


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 241/555 (43%), Positives = 356/555 (64%), Gaps = 12/555 (2%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
           +S L    +   + QI AQ+   +L  E F   +L+ + +    + +  A  +FNQI  P
Sbjct: 21  ISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTL--AVNVFNQIQDP 78

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG--VLMGLVEGTE 133
           +  ++NT+IR + ++S P  A S +  M+  G+  DN+TYPF+LKAC   V + +VE   
Sbjct: 79  DVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVE--M 136

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG--CARSVFEGSEIKDLVSWNLVLRGFVEC 191
           IH +V KMGF  D+FV N LI  Y KCG  G   AR VFE    +D VSWN ++ G V+ 
Sbjct: 137 IHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKV 196

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGY 251
           GE+G+AR +FDEMP++D +SW+ ++DGY  K G++++A  LFE MP ++++SW++M+ GY
Sbjct: 197 GELGEARRLFDEMPERDTVSWNTILDGY-VKAGEMNAAFELFEKMPARNVVSWSTMVLGY 255

Query: 252 AKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
           +K GD+  A+ LF++MP +N+  W+IMI GYA+ G  K+A+ L+ +M   G++ D  +V+
Sbjct: 256 SKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVI 315

Query: 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
             +SACA  G L LGK +H  ++R+R      V  ALIDMY KCGSL+ A  IF+ M +K
Sbjct: 316 SILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRK 375

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           +V+S+N +I GL M+G GE+AL+ F++M+ EG   D + F+GVL AC+H+G   EG   F
Sbjct: 376 DVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYF 435

Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN 491
            +M+R  G+ P++EHY C+VDLL R G L++A  +V SMP++PN  +WGTLL ACR H  
Sbjct: 436 HAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSA 495

Query: 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
             LAE V + LV+ +  D G   +LSNIYA AG W++   IR  M+   I+K +G S IE
Sbjct: 496 TGLAEEVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSIE 555

Query: 552 IDGNIKEFVSGEIFD 566
           +D  + EF    +FD
Sbjct: 556 VDDEVHEFT---VFD 567


>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 719

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 232/549 (42%), Positives = 353/549 (64%), Gaps = 8/549 (1%)

Query: 9   FSLKNPLVSLLQ-ISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTS-PNTLNMDQAE 66
             L +P++  L+    +T    QI  QL  + L+ +P    + + +L S P+++    A 
Sbjct: 55  LKLSHPILRTLESCCGSTKEFNQIHTQLIVSGLLQQPLAAGRAVKTLCSFPDSVQ--HAV 112

Query: 67  RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYV-NMKRKGLLVDNYTYPFVLKACGVL 125
            LF  + +P+ ++ NT++R Y   ++P  AL FY   M RK +  ++YT+P ++K C  +
Sbjct: 113 SLFEGLEEPDAFICNTIMRTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVKVCWEI 172

Query: 126 MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL 185
             + +G +IH  ++K GF  D+FV N LI MYS CG +G AR++FE   I DLV+WN ++
Sbjct: 173 GSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMI 232

Query: 186 RGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWN 245
            G+V+ GE+G ARE+F+EMP++D  SW+ MI GY    GD+++A  LF  MP +D++SWN
Sbjct: 233 DGYVKNGEIGAARELFEEMPERDLFSWNSMIAGY-VGNGDMTAAEDLFNKMPFRDIVSWN 291

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
            MIDGYA++ ++  A +LFN MP RNV SW+IM+  Y +  +  E L +F +M+ + + P
Sbjct: 292 CMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETM-P 350

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSR-ITMDMIVQTALIDMYMKCGSLDEARRI 364
           +  +++  ++ACA +G LD GKWIH ++K +R I  D+++ TAL+ MY KCG++D AR +
Sbjct: 351 NEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDV 410

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F  M+ ++V+S+N MI G GM+G  ++AL+ F  ME  G   +D  F+ VL AC+HSG+ 
Sbjct: 411 FDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMI 470

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            EG+  F  M+R   IEPK+EHY C+VDLL RAG ++    ++  MPM+   ALWG LL 
Sbjct: 471 LEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLS 530

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           ACR H N  LAE+V + L+EL+  D G Y+LLSNIYA  G W+    +RKMM++R + K 
Sbjct: 531 ACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKERGLTKT 590

Query: 545 TGRSVIEID 553
           TG S + I+
Sbjct: 591 TGFSWVHIE 599


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/569 (40%), Positives = 358/569 (62%), Gaps = 12/569 (2%)

Query: 21  ISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMH 80
           ISKT     Q  A L    L+  P   S+L+  L   ++ +++ A +LF Q+  P+ ++ 
Sbjct: 24  ISKTK----QAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFIC 79

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           NTMIRGY +S NP +A+S Y  M  +G+ VDNYTYPFVL AC  L  +  G   H EV+K
Sbjct: 80  NTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLK 139

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
            GF  D+FV+N LI  Y  CG  GCA  VF+ S ++D+V+WN+++   +  G   KA ++
Sbjct: 140 NGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDL 199

Query: 201 FDEMPQKDAISWS----IMIDGYRKKKGDISSARILFEHMP----IKDLISWNSMIDGYA 252
            DEM + D +       + +     + G++   + L  +       ++L   N+++D Y 
Sbjct: 200 LDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYC 259

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
           K  D+ +AQ++FN + E++V SW+ M+ G A+ G  +EAL LF++M    +  D I+++G
Sbjct: 260 KCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVG 319

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
            +SACAQ GALD GK+IH+ + +  I  D++++TAL+DMY KCGS+D A ++F  M  +N
Sbjct: 320 VLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRN 379

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
           V ++N +I GL M+G GE+A+  F QME + +  DD+ F+ +L ACSH+GL  EG  +FQ
Sbjct: 380 VFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQ 439

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV 492
           +MK    IEP++EHY C+VDLL RA +++ AL  +E+MP+K N  LW TLL ACR+  + 
Sbjct: 440 AMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHF 499

Query: 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
            LAE +   ++EL+ D CG YV+LSN+YA    W+HAL++RK M+ + I+K  G S IE+
Sbjct: 500 DLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIEL 559

Query: 553 DGNIKEFVSGEIFDVQSEELELVIQSFVK 581
           +G I +FV+G+   +Q+E++  +I+   +
Sbjct: 560 NGMIHQFVAGDRSHLQTEQIYAMIEEMTR 588


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/602 (38%), Positives = 359/602 (59%), Gaps = 42/602 (6%)

Query: 3   TLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNM 62
           TL   ++   +P +SL+     T  + QI AQ+    L  +PF+ S+L+ +       ++
Sbjct: 26  TLNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSL 85

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGL-LVDNYTYPFVLKA 121
           D A+++F+QI  PN Y  NT+IR Y  SSNP ++L  ++ M  +     D +T+PF++KA
Sbjct: 86  DYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKA 145

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
              L  L  G   HG V+K+    DVF++N LI  Y+KCG +G    VF     +D+VSW
Sbjct: 146 ASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSW 205

Query: 182 NLVLRGFVECGEMGKAREVFDEMP----------------------------------QK 207
           N ++  FV+ G   +A E+F EM                                   ++
Sbjct: 206 NSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIER 265

Query: 208 DAISWSI-----MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQ 262
           + I  S+     M+D Y  K G +  A+ LF+ MP KD++SW +M+ GYAKIG+  AAQ 
Sbjct: 266 NRIGESLTLSNAMLDMY-TKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQG 324

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM-LCQGVRPDVISVMGAISACAQVG 321
           +F+ MP +++ +W+ +I  Y Q G PKEAL LF E+ L +  +PD ++++  +SACAQ+G
Sbjct: 325 IFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLG 384

Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
           A+DLG WIHV++K+  + ++  + T+LIDMY KCG L +A  +F+S+ +K+V  ++ MIA
Sbjct: 385 AMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIA 444

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
           GL M+G G++A+  F++M+ + +  + + F  +L ACSH GL  EG   F  M+   G+ 
Sbjct: 445 GLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVL 504

Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEG 501
           P ++HY+C+VD+L RAG LE+A+ ++E MPM P  ++WG LL AC  H+NV LAE     
Sbjct: 505 PGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQ 564

Query: 502 LVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
           L+EL+  + G YVLLSNIYA AG W+    +RK+MR   +KKE G S IE+DG + EF+ 
Sbjct: 565 LIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLV 624

Query: 562 GE 563
           G+
Sbjct: 625 GD 626


>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 225/544 (41%), Positives = 348/544 (63%), Gaps = 6/544 (1%)

Query: 9   FSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL-NMDQAER 67
           F   + + +LL+   TT+ + Q+ A++    L  + F +SQ L   T  N+L N      
Sbjct: 22  FDTTSSISTLLKACTTTSTLEQVHARIIRKGLHQDHFIISQFL---TLCNSLSNFSYTTS 78

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           +FN +  P+T + NT I+GY+++ +    +S ++ MKR   + D +TYP ++KAC  + G
Sbjct: 79  VFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCG 138

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
           + EG   HG  V+ G   DVFV+  LI +Y KCG + CAR VF+    +++VSW  ++ G
Sbjct: 139 VKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAG 198

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM 247
           +    ++ +AR++FDEMP+K+A+SW+ +I GY  K GD+ SAR +F+ MP ++++S+ +M
Sbjct: 199 YASFSDLVEARKLFDEMPEKNAVSWNAIISGY-VKCGDLRSARKMFDEMPHRNVVSFTTM 257

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           IDGYAK GD+ +A+ +F E PER+V +WS +I GY Q+G P EA+ +F EM  + V+PD 
Sbjct: 258 IDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDE 317

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI-VQTALIDMYMKCGSLDEARRIFY 366
             ++  +SAC+Q+G+L+L KW+  ++++S I +    V  ALIDM  KCGS+D A ++F 
Sbjct: 318 FIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFE 377

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            M K+++ISY  M+ GL ++G G +A+  F++M  EG+  DD+ F  +L ACS +GL  E
Sbjct: 378 EMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDE 437

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G   F+SMK    I P  +HY+C+VDLL RAG L++A  +++SMP++P+   WG LL AC
Sbjct: 438 GCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGAC 497

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           + H ++ L EVV + L EL+  + G YVLLSNIYA A  W     +R  MR+R I+K  G
Sbjct: 498 KLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPG 557

Query: 547 RSVI 550
            S I
Sbjct: 558 CSWI 561


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/600 (39%), Positives = 361/600 (60%), Gaps = 40/600 (6%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           ++P + LL   ++     QI A +    L    F LS+L+       + ++  A  LFN 
Sbjct: 29  EHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNS 88

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           I +PN ++ N+MIRG + S +P  AL F+V M   G+  ++YT+PF+LK+C  L    EG
Sbjct: 89  IEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEG 148

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            +IH  V+K+GF+ DVF+   LI MY++ G M  A+ VF+ S  +D +S+  ++ G+   
Sbjct: 149 KQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALW 208

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM------PIKDLI--- 242
           G M +AR++FDEMP KD +SW+ MI GY  + G    A +LFE M      P +  I   
Sbjct: 209 GYMDRARQLFDEMPVKDVVSWNAMIAGY-AQMGRSKEALLLFEDMRKANVPPNESTIVSV 267

Query: 243 -----------------SW-------------NSMIDGYAKIGDLVAAQQLFNEMPERNV 272
                            SW             N++ID Y+K GDL  A++LF++M ER+V
Sbjct: 268 LSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDV 327

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
            SW++MI GY    + KEAL LFREML  GV P  I+ +  + +CA +GA+DLGKWIH +
Sbjct: 328 ISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAY 387

Query: 333 MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
           + ++  ++   + T+LID+Y KCG++  AR++F  M  K++ S+N MI GL M+G  ++A
Sbjct: 388 INKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKA 447

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
            + F++M ++GI  +++ F+G+L AC H+GL   G + F SM +   I PK +HY C++D
Sbjct: 448 FELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMID 507

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
           LL RAG  E+A +++++M +KP+ A+WG+LL ACR+H  V L E+V E L EL+ D+ G 
Sbjct: 508 LLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGA 567

Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           YVLLSNIYA AG W+   RIR  +  R +KK  G + IE+D  + EF+ G+    QSE++
Sbjct: 568 YVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDI 627


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/560 (40%), Positives = 356/560 (63%), Gaps = 7/560 (1%)

Query: 26  THILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIR 85
             + Q+ AQ+   +L  +     +L+ +L+     N+  A R+FNQ+ +PN ++ N++IR
Sbjct: 33  NQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNL--AVRVFNQVQEPNVHLCNSLIR 90

Query: 86  GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC 145
            + Q+S P +A   +  M+R GL  DN+TYPF+LKAC     L     +H  + K+G   
Sbjct: 91  AHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSS 150

Query: 146 DVFVVNGLIGMYSKCGHMGC--ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDE 203
           D++V N LI  YS+CG +G   A  +FE    +D VSWN +L G V+ GE+  AR +FDE
Sbjct: 151 DIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDE 210

Query: 204 MPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQL 263
           MPQ+D ISW+ M+DGY + + ++S A  LFE MP ++ +SW++M+ GY+K GD+  A+ +
Sbjct: 211 MPQRDLISWNTMLDGYARCR-EMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVM 269

Query: 264 FNEMP--ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
           F++MP   +NV +W+I+I GYA+ G  KEA  L  +M+  G++ D  +V+  ++AC + G
Sbjct: 270 FDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESG 329

Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
            L LG  IH  +KRS +  +  V  AL+DMY KCG+L +A  +F  + KK+++S+N M+ 
Sbjct: 330 LLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLH 389

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
           GLG++G G+EA++ F++M  EGI  D + F+ VL +C+H+GL  EG   F SM++   + 
Sbjct: 390 GLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLV 449

Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEG 501
           P++EHY CLVDLL R G L++A+ +V++MPM+PN+ +WG LL ACR H  V +A+ V++ 
Sbjct: 450 PQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDN 509

Query: 502 LVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
           LV+L   D G Y LLSNIYA A  WE    IR  M+   ++K +G S +E++  I EF  
Sbjct: 510 LVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTV 569

Query: 562 GEIFDVQSEELELVIQSFVK 581
            +    +S+++  ++ S ++
Sbjct: 570 FDKSHPKSDQIYQMLGSLIE 589


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/562 (41%), Positives = 350/562 (62%), Gaps = 5/562 (0%)

Query: 13  NP-LVSLLQISKTTTHILQILAQLTTNDLITEPF-TLSQLLMSLTSPNTLNMDQAERLFN 70
           NP ++SL    KT  H+ Q+ AQ+ T+     PF   +   +S  SP    +  A+ +F+
Sbjct: 96  NPQILSLFNPCKTLRHLKQVHAQIITHH--NSPFQLSALASLSALSPFPTFLAYAKTIFH 153

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
            +  P   ++N++IR  + S  P +AL  Y  M + GL  D+ TYPFV+KAC        
Sbjct: 154 HLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWF 213

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G  +H  VVK GF CD ++V+ LI +Y+    +G A+ +F     +D+VSWN ++ G+V+
Sbjct: 214 GLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVK 273

Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDG 250
             EMG AR VFD M  +D ISW+ MI+GY    G I  A+ LF+ MP ++L+SWNSM+ G
Sbjct: 274 HVEMGHARMVFDRMVCRDVISWNTMINGY-AIVGKIDEAKRLFDEMPERNLVSWNSMLAG 332

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           + K G++  A  LF+EMP R+V SW+ M+  YAQ G P EAL LF +M   GV+P   +V
Sbjct: 333 FVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATV 392

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
           +  +SACA +GALD G  +H ++  +RI ++ IV TAL+DMY KCG +  A ++F +M  
Sbjct: 393 VSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMES 452

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           K+V+++N +IAG+ ++G  +EA + F +M+  G+  +D+ F+ +L ACSH+G+  EG ++
Sbjct: 453 KDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKL 512

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
              M    GIEPK+EHY C++DLL+RAG LE+A+ ++ +MPM+PN +  G LL  CR H 
Sbjct: 513 LDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHG 572

Query: 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           N  L E+V + L+ L+    G Y+LLSNIYA A  W+ A ++R +M+   I K  G SVI
Sbjct: 573 NFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVI 632

Query: 551 EIDGNIKEFVSGEIFDVQSEEL 572
           E+ G +  FV+G+    +S ++
Sbjct: 633 ELKGMVHRFVAGDWSHPESNKI 654


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/600 (38%), Positives = 350/600 (58%), Gaps = 41/600 (6%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           NPL+SLL+   +   + +I AQ+ +  LI++ F LS+L+         N+D  +++ N  
Sbjct: 55  NPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNA 114

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV-DNYTYPFVLKACGVLMGLVEG 131
              N +  N  IRGY +S NP  A+  Y NM RKG  + DNYTYP + K C         
Sbjct: 115 ANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTA 174

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            EI G V+++GF  D+FV N +I +   CG +  AR +F+ S ++DLVSWN ++ G+V C
Sbjct: 175 NEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRC 234

Query: 192 G----------EMGKAREVFDEMPQKDAISWSI--------------------------- 214
           G          +MG+   + DE+     +S S                            
Sbjct: 235 GLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLA 294

Query: 215 --MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
             ++D Y K K +I +A+ILFE+M  K ++SW +M+ GYAK G L +A +LFNEMPE++V
Sbjct: 295 NALMDMYIKCK-NIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDV 353

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
             W+ +I G+ Q    KEAL LF EM    V PD I+V+  +SAC+Q+GALD+G W+H +
Sbjct: 354 VLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHY 413

Query: 333 MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
           + +  +TM++ + TAL+DMY KCG++ +A ++F  M  +N +++  +I GL ++G    A
Sbjct: 414 VDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAA 473

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
           +  F++M + G+  D++ F+GVL AC H GL  +G   F  M    GI PKL+HYSCLVD
Sbjct: 474 ISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVD 533

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
           LL RAG LE+A  ++ SMP +P+  +WG L    R H NV + E     L+EL   D G+
Sbjct: 534 LLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGI 593

Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           YVLL+N+Y DA MWE A ++RKMM +R ++K  G S IE++G + +F+  +    QSE++
Sbjct: 594 YVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKI 653


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/600 (38%), Positives = 350/600 (58%), Gaps = 41/600 (6%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           NPL+SLL+   +   + +I AQ+ +  LI++ F LS+L+         N+D  +++ N  
Sbjct: 55  NPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNA 114

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV-DNYTYPFVLKACGVLMGLVEG 131
              N +  N  IRGY +S NP  A+  Y NM RKG  + DNYTYP + K C         
Sbjct: 115 ANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTA 174

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            EI G V+++GF  D+FV N +I +   CG +  AR +F+ S ++DLVSWN ++ G+V C
Sbjct: 175 NEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRC 234

Query: 192 G----------EMGKAREVFDEMPQKDAISWSI--------------------------- 214
           G          +MG+   + DE+     +S S                            
Sbjct: 235 GLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLA 294

Query: 215 --MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
             ++D Y K K +I +A+ILFE+M  K ++SW +M+ GYAK G L +A +LFNEMPE++V
Sbjct: 295 NALMDMYIKCK-NIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDV 353

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
             W+ +I G+ Q    KEAL LF EM    V PD I+V+  +SAC+Q+GALD+G W+H +
Sbjct: 354 VLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHY 413

Query: 333 MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
           + +  +TM++ + TAL+DMY KCG++ +A ++F  M  +N +++  +I GL ++G    A
Sbjct: 414 VDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAA 473

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
           +  F++M + G+  D++ F+GVL AC H GL  +G   F  M    GI PKL+HYSCLVD
Sbjct: 474 ISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVD 533

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
           LL RAG LE+A  ++ SMP +P+  +WG L    R H NV + E     L+EL   D G+
Sbjct: 534 LLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGI 593

Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           YVLL+N+Y DA MWE A ++RKMM +R ++K  G S IE++G + +F+  +    QSE++
Sbjct: 594 YVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKI 653


>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 629

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/556 (41%), Positives = 352/556 (63%), Gaps = 10/556 (1%)

Query: 26  THILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIR 85
             + Q+ AQ+   +L  +     +L+ +L+     N+  A R+FNQ+ +PN ++ N++IR
Sbjct: 33  NQVKQLHAQIIRRNLHQDLHIAPKLISALSLCRQTNL--ALRVFNQVQEPNVHLCNSLIR 90

Query: 86  GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC 145
            +  +S P +A   +  M+R GL  DN+TYPF+LKAC  L  L     +H  + K+G   
Sbjct: 91  AHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKMMHNHIEKLGLSS 150

Query: 146 DVFVVNGLIGMYSKCGHMGC--ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDE 203
           D++V N LI  YS+CG +G   A  +FE    +D VSWN +L G V+ GE+  AR++FDE
Sbjct: 151 DIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARKLFDE 210

Query: 204 MPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQL 263
           MPQ+D ISW+ M+DGY + + ++S A  LFE MP ++ +SW++M+ GY+K GD+  A+ +
Sbjct: 211 MPQRDLISWNTMLDGYARCR-EMSRAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVM 269

Query: 264 FNEMP--ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
           F++MP   +NV +W+I+I GYA+ G  KEA  L  +M+  G+R D  + +  ++ACA+ G
Sbjct: 270 FDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAISILAACAESG 329

Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
            L LG   H  +K+S +  +  V  AL+DMY KCGSL +A  +F  M KK+++S+N M+ 
Sbjct: 330 LLSLGMRAHSIIKKSNLNSNASVLNALLDMYAKCGSLKKAFDVFNDMPKKDLVSWNTMLH 389

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
           GLG++G G+EA++ F++M  EGI  D + F+ VL +C+H+GL  EG   F SM++   + 
Sbjct: 390 GLGVHGHGKEAIELFSRMRKEGIWPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLV 449

Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEG 501
           PK+EHY CLVDLL R G L++A+ +V++MPM+PN+ +WG LL ACR H  V +A+ V++ 
Sbjct: 450 PKVEHYGCLVDLLGRGGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDN 509

Query: 502 LVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
           LV+L   D G Y LLSNIYA A  WE    IR  M+   ++K +G S +E++  I EF  
Sbjct: 510 LVKLDPSDPGNYTLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFT- 568

Query: 562 GEIFDVQSEELELVIQ 577
             +FD    + + + Q
Sbjct: 569 --VFDKSHPKSDQIYQ 582


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/600 (36%), Positives = 354/600 (59%), Gaps = 40/600 (6%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           + P +SL++  K+   + QI +Q     LI+ P   +Q++         +M+ A  +F+ 
Sbjct: 19  QTPPLSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDT 78

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           +  PN ++ N MI+GY++   P  A+S Y  M  +G++ D YTYPF+LK       +  G
Sbjct: 79  MPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCG 138

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            E+H  +VK+GF  +VFV N LI +YS  G +  AR VF+ S   D+V+WN+++ G+   
Sbjct: 139 RELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRS 198

Query: 192 GEMGKAREVFDEMPQKDAISWSI------------------------------------- 214
            +  ++ ++FDEM +   +  SI                                     
Sbjct: 199 KQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLE 258

Query: 215 --MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
             +ID Y    GD+ +A  +F++M  +D+ISW +++ G+  +G +  A+  F++MPER+ 
Sbjct: 259 NALIDMY-AACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDF 317

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
            SW+ MIDGY Q    KE L LFREM    ++PD  +++  ++ACA +GAL+LG+WI  +
Sbjct: 318 VSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAY 377

Query: 333 MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
           + ++ I +D  V  ALIDMY  CG++++A RIF +M  ++ IS+  +I GL +NG+GEEA
Sbjct: 378 IDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEA 437

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
           L  F+QM    I  D++  +GVL AC+HSG+  +G + F  M    GIEP + HY C+VD
Sbjct: 438 LDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVD 497

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
           LL RAG L++A  ++++MP+KPN  +WG+LL ACR H++  +AE+  + ++EL+ ++  +
Sbjct: 498 LLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAV 557

Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           YVLL NIYA    WE    +RK+M  R IKK  G S+IE++G++ EFV+G+    QS+E+
Sbjct: 558 YVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEI 617



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 163/330 (49%), Gaps = 7/330 (2%)

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
           ++GD+  A+ +F+ MP  N F W+ MI GY++ G P  A+ ++ EML +GV PD  +   
Sbjct: 65  ELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPF 124

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
            +    +  A+  G+ +H  + +   + ++ VQ ALI +Y   G +  AR +F   +K +
Sbjct: 125 LLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGD 184

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
           V+++NVMI+G   +   +E++K F +ME   +    +  + VL ACS       G R+ +
Sbjct: 185 VVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHR 244

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV 492
            +K    IEP     + L+D+ +  G+++ AL I ++M  + ++  W  ++    N   V
Sbjct: 245 YVK-DLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSR-DVISWTAIVTGFTNLGQV 302

Query: 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE--TGRSVI 550
            LA    + + E    D   +  + + Y     ++  L + + M+   IK +  T  S++
Sbjct: 303 GLARNYFDKMPE---RDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSIL 359

Query: 551 EIDGNIKEFVSGEIFDVQSEELELVIQSFV 580
               ++     GE      ++ E+ I SFV
Sbjct: 360 TACAHLGALELGEWIKAYIDKNEIKIDSFV 389


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/574 (40%), Positives = 353/574 (61%), Gaps = 6/574 (1%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLN-MDQAERLF 69
           L+   +SLLQ  KT+  + QI AQ+  N      +   +L+   T   TL  M  A +LF
Sbjct: 37  LEERFISLLQSCKTSKQVHQIQAQIIANGFQYNEYITPKLV---TICATLKRMTYARQLF 93

Query: 70  NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV 129
           +QI  PN  + N+M RGY QS + ++ +  +  MK   +  + +T+P VLK+CG +  L+
Sbjct: 94  DQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALI 153

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
           EG ++H  ++K GF  + FV   LI MYS  G +G A  +F     +++V+W  ++ G++
Sbjct: 154 EGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYI 213

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMID 249
              ++  AR +FD  P++D + W+IM+ GY  + GD+  AR LF  MP +D++ WN+++ 
Sbjct: 214 LSADLVSARRLFDLAPERDVVLWNIMVSGY-IEGGDMVEARKLFHEMPNRDVMFWNTVLK 272

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVI 308
           GYA  G++ A + LF EMPERN+FSW+ +I GYA +G   E L  F+ ML +  V P+  
Sbjct: 273 GYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDA 332

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           +++  +SACA++GALDLGKW+HV+ + S +  ++ V  AL+DMY KCG ++ A  +F  M
Sbjct: 333 TLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGM 392

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
             K++IS+N +I GL M+  G +AL  F QM+  G   D + F+G+L AC+H GL  +G+
Sbjct: 393 DTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGF 452

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
             FQSM     I P++EHY C+VD+L+RAG LEQA+  V  MP++ +  +W  LL ACR 
Sbjct: 453 AYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRI 512

Query: 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRS 548
           ++NV LAE+ ++ L+EL+  +   YV+LSNIY DAG WE   R++  MR    KK  G S
Sbjct: 513 YKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCS 572

Query: 549 VIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKT 582
           +IE++  + EF S +    Q EE+  V++  VK 
Sbjct: 573 LIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKV 606


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/532 (40%), Positives = 338/532 (63%), Gaps = 2/532 (0%)

Query: 41  ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFY 100
           +  P   S+LL     P   N+  A  LF+ I +P     N +I+ Y ++     A++ +
Sbjct: 44  LNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALF 103

Query: 101 VNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC 160
             +     + D++T P VLK C  L  L EG +IHG V+K+GF  D FV++ L+ MYSKC
Sbjct: 104 CKL-LCDFVPDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKC 162

Query: 161 GHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR 220
           G +   R VF+  E KD+VSWN ++ G+  CGE+  A E+F+EMP+KD+ SW+I+IDG  
Sbjct: 163 GEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGL- 221

Query: 221 KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMID 280
            K G + +AR +F+ MPI++ +SWN+MI+GY K GD   A++LF++MPER++ +W+ MI 
Sbjct: 222 SKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMIT 281

Query: 281 GYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM 340
           GY ++    +AL LF  ML + + P+  +++GA+SA + + +L  G+W+H ++ +S    
Sbjct: 282 GYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKT 341

Query: 341 DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME 400
           D ++ T LI+MY KCGS+  A R+F S+ KK +  +  +I GLGM+G  E+ L+ F +M 
Sbjct: 342 DGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMC 401

Query: 401 TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460
             G+    + F+GVL ACSH+G A + +R F+ M    GI+P +EHY CL+D+L RAG L
Sbjct: 402 RTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHL 461

Query: 461 EQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520
           E+A + +E MP+K N  +W +LL   R H N+ + E   + L++L  D  G YV+LSN+Y
Sbjct: 462 EEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMY 521

Query: 521 ADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           A AG+WE   ++R+MM+K+ +KK+ G S IE  G+I EF+ G+    Q+EE+
Sbjct: 522 AAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEI 573


>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/567 (39%), Positives = 347/567 (61%), Gaps = 13/567 (2%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
           +S L        + Q+ AQ+  ++L  + F + +L+ + +      M  A   FNQ+  P
Sbjct: 24  LSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFSL--CRQMLLATNAFNQVQYP 81

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC--GVLMGLVEGTE 133
           N +++NTMIR ++ +S P +A + +  M+R G   DN+T+PF+LK C   V + ++E   
Sbjct: 82  NVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIES-- 139

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG--CARSVFEG-SEIKDLVSWNLVLRGFVE 190
           +H ++ K GF+ DVFV N LI  YSKCG  G   A+ +F      +D+VSWN ++ G  +
Sbjct: 140 VHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAK 199

Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDG 250
            G   +AR+VFDEMP+KD ISW+ M+DGY  K G +  A  LF+ MP ++++SW++M+ G
Sbjct: 200 GGLYEEARKVFDEMPEKDGISWNTMLDGY-VKVGKMDDAFKLFDEMPERNVVSWSTMVLG 258

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           Y K GD+  A+ LF++MP +N+ SW+I++ G+A+ G  +EA+ LF +M    ++ D  +V
Sbjct: 259 YCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTV 318

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
           M  ++ACA+ G L LG+ IH  +K +       +  AL+DMY KCG L+ A  +F  +  
Sbjct: 319 MSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKN 378

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           K+V+S+N M+ GL M+G G +AL+ F +M+ EG   + +  +GVL AC+H+GL  +G R 
Sbjct: 379 KDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRY 438

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
           F +M+R   + P++EHY C+VDLL R G LE+A+ ++ +MPM PN  +WGTLL ACR H 
Sbjct: 439 FSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMPMAPNAIIWGTLLGACRMHN 498

Query: 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
            V LA  V++ LVEL+  D G + +LSNIYA AG W      R  MR    KK +G S I
Sbjct: 499 AVELAREVLDHLVELEPTDSGNFSMLSNIYAAAGDWNCVANTRLRMRSIGTKKPSGASSI 558

Query: 551 EIDGNIKEFVSGEIFDVQSEELELVIQ 577
           E++  + EF    +FD    + + + Q
Sbjct: 559 EVNNEVHEFT---VFDRSHPKSDNIYQ 582


>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/557 (41%), Positives = 344/557 (61%), Gaps = 9/557 (1%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           QI AQ+   +L  + F   +L+ + +     ++  A  +FN +  PN +++N++IR +  
Sbjct: 39  QIHAQVLKANLHQDLFVAPKLIAAFSL--CRHLASAVNVFNHVPHPNVHLYNSIIRAHAH 96

Query: 90  SSNPQKALSF--YVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV 147
           +S+  ++L F  +  M++ GL  DN+TYPF+LKAC     L     IH  V K+GF  D+
Sbjct: 97  NSS-HRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVEKIGFYGDI 155

Query: 148 FVVNGLIGMYSKCGHMGC--ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           FV N LI  YS+CG+ G   A S+F   E +D+V+WN ++ G V CGE+  A ++FDEMP
Sbjct: 156 FVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDEMP 215

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
            +D +SW+ M+DGY  K G++ +A  LFE MP ++++SW++M+ GY+K GD+  A+ LF+
Sbjct: 216 DRDMVSWNTMLDGY-AKAGEMDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARMLFD 274

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
             P +NV  W+ +I GYA+ G  +EA  L+ +M   G+RPD   ++  ++ACA+ G L L
Sbjct: 275 RCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGL 334

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM-TKKNVISYNVMIAGLG 384
           GK IH  M+R R      V  A IDMY KCG LD A  +F  M  KK+V+S+N MI G  
Sbjct: 335 GKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFA 394

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444
           M+G GE+AL+ F+ M  EG   D   F+G+L AC+H+GL  EG + F SM++  GI P++
Sbjct: 395 MHGHGEKALELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQV 454

Query: 445 EHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE 504
           EHY C++DLL R G L++A  ++ SMPM+PN  + GTLL ACR H +V LA  V E L +
Sbjct: 455 EHYGCMMDLLGRGGHLKEAFMLLRSMPMEPNAIILGTLLNACRMHNDVDLARAVCEQLFK 514

Query: 505 LKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEI 564
           L+  D G Y LLSNIYA AG W +   +R  M+    +K +G S IE++  + EF   + 
Sbjct: 515 LEPSDPGNYSLLSNIYAQAGDWMNVANVRLQMKNTGGEKPSGASSIEVEEEVHEFTVFDQ 574

Query: 565 FDVQSEELELVIQSFVK 581
              +S+++  +I   V+
Sbjct: 575 SHPKSDDIYQMIDRLVQ 591


>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/579 (39%), Positives = 343/579 (59%), Gaps = 37/579 (6%)

Query: 3   TLAAAKFSLKNP---LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNT 59
           T    KF  KN     +S LQ  K+T  + +I AQL     I + F  ++ + S  + + 
Sbjct: 15  TTVTTKFKSKNSNYKTLSALQSCKSTEDLKKIHAQLIITGQIKDTFIATKTVESY-AVSA 73

Query: 60  LNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVL 119
            N+D A  +F  I  P++Y   TMIRG+ ++ NP+KAL FY  M+++G+ ++ +T+ FVL
Sbjct: 74  RNIDYAFWVFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVL 133

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           KA G+     EG  +HG++VK+GF  DVF  N LI MY KC                   
Sbjct: 134 KAYGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKC------------------- 174

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239
                       G +  A  +FDEMP  + ++W+ MI G     GD   AR LF  MP +
Sbjct: 175 ------------GSITDAHLLFDEMPNHNVVTWNTMITGCFGC-GDTERARRLFGEMPER 221

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           ++ SWN+++ GY+K+G +  A+ LF+ MPER+V SW  MI  Y Q+G   EAL LF+EM+
Sbjct: 222 NVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMM 281

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
             GV  D I +   +SACAQ+GALD+G+WIH +MKRS++  D+ + TAL+DMY KCG +D
Sbjct: 282 LAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCID 341

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
            A  +F +M +KN+ S+N M++GL ++G G  AL+ F QME+ G+  +D+ F+ VL ACS
Sbjct: 342 TAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITFVAVLSACS 401

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           H G   EG++ F  M +   I PK+EHY C+VD+L R G + +A  ++ +MP++PN+ +W
Sbjct: 402 HIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMIRTMPLEPNVVIW 461

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
           G LL AC+ H    + E VV  + +L ++D G YVLLSNI+A    W    + RKMM++ 
Sbjct: 462 GALLNACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFAAKSQWNEVEKTRKMMKQM 521

Query: 540 KIKKE-TGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
            ++K+  G S IE+D  + +F + +    +  E+  VI+
Sbjct: 522 GVEKKIPGYSSIELDSVVHDFFAEDRLHSKWREVSTVIE 560


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/543 (39%), Positives = 335/543 (61%), Gaps = 2/543 (0%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           Q+ A      +   PF  S+LL   + P   ++  A  +F++I + +    NT+I+ Y +
Sbjct: 31  QLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVE 90

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
           +      +  +  +  +  L DN+T P V+K C  L  + EG +IHG  +K+GF  DVFV
Sbjct: 91  NQFSHDGIVLFHELVHE-YLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFV 149

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA 209
              L+ MYSKCG + CAR VF+G   KD+V WN ++ G+  CGE+  A ++F+EMP++DA
Sbjct: 150 QGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPERDA 209

Query: 210 ISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269
            SW++++DG   K G + SAR LF+ MP ++L+SWN+MI+GY K GD  +A +LF +MP 
Sbjct: 210 FSWTVLVDGL-SKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPI 268

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329
            ++ +W++MI GY  +G   +A+ +F  ML  G RP   +++  +SA + +  L  G+WI
Sbjct: 269 WDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWI 328

Query: 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFG 389
           H +M+++   +D I+ T+LI+MY KCG ++ A  +F ++ KK V  +  +I GLG++G  
Sbjct: 329 HSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMA 388

Query: 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449
             AL  F +M   G+  + +IF+GVL AC+H+GL  +G + F  M     IEP LEHY C
Sbjct: 389 NHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGC 448

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509
           LVD+L RAG LE+A N +E+MP+ PN  +W +LL   RNH  + + E   + ++E+  + 
Sbjct: 449 LVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPET 508

Query: 510 CGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQS 569
            G Y+LLSN+YA +GMWE    +R+MM KR  +K+ G S +E  G + EF+ G+I   Q+
Sbjct: 509 IGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQT 568

Query: 570 EEL 572
           +E+
Sbjct: 569 KEI 571


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/618 (35%), Positives = 356/618 (57%), Gaps = 46/618 (7%)

Query: 1   MKTLAAAKFSLK------NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSL 54
           M T+AA   +LK      +PL+SLL+  ++   + Q+  Q     L   P   ++++   
Sbjct: 22  MTTIAATSSALKSFSPPTHPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFC 81

Query: 55  TSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYT 114
            +    +   A RLF++I +PN ++ NTMIRGY++   PQ  +S Y+ M R+G+  D YT
Sbjct: 82  CTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYT 141

Query: 115 YPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174
           +PF+ K     + L  G ++HG V+K G   +VFV   L+ MY  CG +  AR VF+   
Sbjct: 142 FPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCP 201

Query: 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSI-------------------- 214
             D+++WN+++  + + G+  ++R +F  M  K  +  ++                    
Sbjct: 202 KADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKK 261

Query: 215 -------------------MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIG 255
                              MID Y    G++ SA  +F  M  +D+ISW +++ G+  +G
Sbjct: 262 VHSYVKNCKVESNLVLENAMIDMY-ADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLG 320

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
           ++  A+  F++MPE++  SW+ MIDGY +    KEAL LFR M    V+PD  +++  ++
Sbjct: 321 EIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLT 380

Query: 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS 375
           ACA +GAL+LG+WI  ++ R++I  D+ V+ ALIDMY KCG +D+A  IF  M++++  +
Sbjct: 381 ACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFT 440

Query: 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMK 435
           +  MI GL +NG GE+AL  F+ M    I  D++ ++GVL AC+H+GL  +G + F  M 
Sbjct: 441 WTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMT 500

Query: 436 RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLA 495
              GIEP + HY CLVDLL+RAG L++A  ++E+MP+K N  +WG LL  CR ++   +A
Sbjct: 501 SQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMA 560

Query: 496 EVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGN 555
           E+VV+ ++EL+ D+  +YVLL NIYA    W     +R+MM  + IKK  G S+IE++G 
Sbjct: 561 EMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGR 620

Query: 556 IKEFVSGEIFDVQSEELE 573
           + EFV+G+    Q++ ++
Sbjct: 621 VHEFVAGDRSHPQTKNID 638


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/618 (35%), Positives = 356/618 (57%), Gaps = 46/618 (7%)

Query: 1   MKTLAAAKFSLK------NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSL 54
           M T+AA   +LK      +PL+SLL+  ++   + Q+  Q     L   P   ++++   
Sbjct: 1   MTTIAATSSALKSFSPPTHPLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFC 60

Query: 55  TSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYT 114
            +    +   A RLF++I +PN ++ NTMIRGY++   PQ  +S Y+ M R+G+  D YT
Sbjct: 61  CTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYT 120

Query: 115 YPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174
           +PF+ K     + L  G ++HG V+K G   +VFV   L+ MY  CG +  AR VF+   
Sbjct: 121 FPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCP 180

Query: 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSI-------------------- 214
             D+++WN+++  + + G+  ++R +F  M  K  +  ++                    
Sbjct: 181 KADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKK 240

Query: 215 -------------------MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIG 255
                              MID Y    G++ SA  +F  M  +D+ISW +++ G+  +G
Sbjct: 241 VHSYVKNCKVESNLVLENAMIDMY-ADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLG 299

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
           ++  A+  F++MPE++  SW+ MIDGY +    KEAL LFR M    V+PD  +++  ++
Sbjct: 300 EIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLT 359

Query: 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS 375
           ACA +GAL+LG+WI  ++ R++I  D+ V+ ALIDMY KCG +D+A  IF  M++++  +
Sbjct: 360 ACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFT 419

Query: 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMK 435
           +  MI GL +NG GE+AL  F+ M    I  D++ ++GVL AC+H+GL  +G + F  M 
Sbjct: 420 WTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMT 479

Query: 436 RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLA 495
              GIEP + HY CLVDLL+RAG L++A  ++E+MP+K N  +WG LL  CR ++   +A
Sbjct: 480 SQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMA 539

Query: 496 EVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGN 555
           E+VV+ ++EL+ D+  +YVLL NIYA    W     +R+MM  + IKK  G S+IE++G 
Sbjct: 540 EMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGR 599

Query: 556 IKEFVSGEIFDVQSEELE 573
           + EFV+G+    Q++ ++
Sbjct: 600 VHEFVAGDRSHPQTKNID 617


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/600 (39%), Positives = 350/600 (58%), Gaps = 41/600 (6%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           +P ++LL   K+  ++ QI +Q+    L    F LS+L+         N+  A  LF  I
Sbjct: 33  HPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESI 92

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
            QPN ++ NTMIRG + SS+P  A+ FYV M   G+  ++YT+PF+LK+C  +    EG 
Sbjct: 93  EQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGK 152

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           +IHG V+K+G   D FV   LI MY++ G +G A  VF  S ++D VS+  ++ G+   G
Sbjct: 153 QIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRG 212

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLI---------- 242
            +  AR +F+E+P +DA+SW+ MI GY  + G    A   F+ M   ++           
Sbjct: 213 CLDDARRLFEEIPVRDAVSWNAMIAGY-AQSGRFEEALAFFQEMKRANVAPNESTMVTVL 271

Query: 243 ----------------SW-------------NSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
                           SW             N++ID Y+K GDL  A+ LF  + E+++ 
Sbjct: 272 SACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDII 331

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
           SW++MI GY+   + KEAL LFR+M    V P+ ++ +  + ACA +GALDLGKWIH ++
Sbjct: 332 SWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYI 391

Query: 334 KRSRITM-DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
            +  + + +  + T+LIDMY KCG+++ A+++F  M  K++ S+N MI+GL M+G    A
Sbjct: 392 DKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMA 451

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
           L+ F QM  EG   DD+ F+GVL ACSH+GL   G + F SM     I PKL+HY C++D
Sbjct: 452 LELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMID 511

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
           LL RAG  ++A  ++++M MKP+ A+WG+LL ACR H NV L E   + L EL+ ++ G 
Sbjct: 512 LLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGA 571

Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           YVLLSNIYA AG W+   RIR  +  + +KK  G S IE+D  + EF+ G+    QS+++
Sbjct: 572 YVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDI 631


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/575 (40%), Positives = 347/575 (60%), Gaps = 8/575 (1%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           L+  L  L + S   + + QI AQ+   +L  + F   +L+ + +     ++  A  +FN
Sbjct: 21  LEEKLCDLHKCSNLDS-VNQIHAQVLKANLHQDLFVAPKLIAAFSL--CRHLASAVNVFN 77

Query: 71  QIYQPNTYMHNTMIRGYTQ-SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV 129
            +  PN +++N++IR +   +S+P    + +  M++ GL  DN+TYPF+LKAC     L 
Sbjct: 78  HVPHPNVHLYNSIIRAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLP 137

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGC--ARSVFEGSEIKDLVSWNLVLRG 187
               IH  V K GF  D+FV N LI  YS+CG  G   A S+F   + +D+V+WN ++ G
Sbjct: 138 LVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGG 197

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM 247
            V CGE+  A ++FDEMP++D +SW+ M+DGY  K G++  A  LFE MP ++++SW++M
Sbjct: 198 LVRCGELEGACKLFDEMPERDMVSWNTMLDGY-AKAGEMDRAFELFERMPQRNIVSWSTM 256

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           + GY+K GD+  A+ LF+  P +NV  W+ +I GYA+ G  +EA  L+ +M   G+RPD 
Sbjct: 257 VCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDD 316

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
             ++  ++ACA+ G L LGK IH  M+R R      V  A IDMY KCG LD A  +F  
Sbjct: 317 GFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSG 376

Query: 368 M-TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
           M  KK+V+S+N MI G  M+G GE+AL+ F++M  EG   D   F+G+L AC+H+GL  E
Sbjct: 377 MMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNE 436

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G + F SM++  GI P++EHY C++DLL R G L++A  ++ SMPM+PN  + GTLL AC
Sbjct: 437 GRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNAC 496

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           R H +V  A  V E L +++  D G Y LLSNIYA AG W +   +R  M     +K +G
Sbjct: 497 RMHNDVDFARAVCEQLFKVEPTDPGNYSLLSNIYAQAGDWMNVANVRLQMMNTGGQKPSG 556

Query: 547 RSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
            S IE++  + EF   +    +S+++  +I   V+
Sbjct: 557 ASSIEVEEEVHEFTVFDQSHPKSDDIYKMIDRLVQ 591


>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 605

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/579 (40%), Positives = 346/579 (59%), Gaps = 19/579 (3%)

Query: 5   AAAKFSLKNPL---VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLN 61
           A   FSL+  L   ++ L       HI QI AQL    L  +P+   +L+ S +  N  N
Sbjct: 12  AFTWFSLRRHLEENITDLHKCTNPNHIKQIHAQLIKCHLHQDPYIAPKLIASYSLTN--N 69

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFY---VNMKRKGLLVDNYTYPFV 118
           +  A  +FNQ+  PN +++N +IR Y+ S N   +L  +   + M   G+L DN+TYPF+
Sbjct: 70  LSSAVNVFNQVPDPNVHLYNYLIRAYSLSGNESNSLCAFGVLLKMHVDGVLADNFTYPFL 129

Query: 119 LKAC-GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           LK C G    L     +H  V K+GF  D+FV N LI  Y +CG +  A  VF G E +D
Sbjct: 130 LKGCNGSSSWLSLVKMVHAHVEKLGFYWDIFVPNSLIDCYCRCGDVEMAMKVFSGMEERD 189

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMP 237
           +VSWN ++ G V+ G++  A +VFDEMP++D +SW+ M+DG+  K G++  A  LFE M 
Sbjct: 190 VVSWNSMVGGLVKNGDLDGALKVFDEMPERDRVSWNTMLDGF-TKAGEMDKAFKLFERMA 248

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
            +D++SW++M+ GY+K GD+  A+ LF+  P +N+  W+ +I GYA+ G  KEA+ L  E
Sbjct: 249 ERDIVSWSTMVCGYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQVKEAMNLCDE 308

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
           M   G+R D    +  ++ACA+ G L LGK +H    RSR      V  + IDMY KCG 
Sbjct: 309 MEKSGLRLDDGFFISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKCGC 368

Query: 358 LDEARRIFYSM-TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
           +D+A R+F  M T+K+++S+N MI G G++G GE++++ F  M  EG   D   F+G+L 
Sbjct: 369 VDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFKPDRYTFIGLLC 428

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
           AC+H+GL  EG   F SM+R  GI P++EHY C+VDLL R G L++A  +V SMP +PN 
Sbjct: 429 ACTHAGLVNEGRGYFYSMQRVYGIVPQIEHYGCMVDLLGRGGHLKEAFWLVRSMPFEPNA 488

Query: 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
            + GTLL ACR H +V LA  V + L +L   D G + LLSNIYA +G W +  ++RK M
Sbjct: 489 IILGTLLGACRMHNDVKLATSVSKYLFKLVPSDPGNFSLLSNIYAQSGDWINVAKVRKQM 548

Query: 537 RKRKIKKETGRSVIEIDGNIKEFV--------SGEIFDV 567
                +K +G S IE++  + EF         SG+I+++
Sbjct: 549 NDEGGQKPSGVSSIEVEEEVHEFTVRDWSHPKSGDIYNM 587


>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
 gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/562 (39%), Positives = 347/562 (61%), Gaps = 7/562 (1%)

Query: 18  LLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLF-NQIYQPN 76
           LLQ  +T   +LQI A +  N +      L++ +   T     +   A  LF N+ ++ +
Sbjct: 8   LLQRCRTRKTLLQIHALILRNAIDANVNILTKFIT--TCGQLSSTRHARHLFDNRSHRGD 65

Query: 77  TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV-DNYTYPFVLKACGVLMGLVEGTEIH 135
           T++ N+MI+ +        A + Y +++R+   V DN+T+  + K C + M + EG E H
Sbjct: 66  TFLCNSMIKSHVVMRQLADAFTLYKDLRRETCFVPDNFTFTVLAKCCALRMAVWEGLETH 125

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
           G VVK+GF  D++V   L+ MY+K G++G AR VF     + LVSW  ++ G+V  G+MG
Sbjct: 126 GHVVKIGFCFDMYVSTALVDMYAKFGNLGLARKVFNDMPDRSLVSWTALIGGYVRRGDMG 185

Query: 196 KAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIG 255
            A  +F  MP +D+ +++++IDGY  K GD+ SAR LF+ MP +++ISW SMI GY   G
Sbjct: 186 NAWFLFKLMPGRDSAAFNLLIDGY-VKVGDMESARSLFDEMPERNVISWTSMIYGYCNNG 244

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV-RPDVISVMGAI 314
           D+++A+ LF+ MPE+N+ SW+ MI GY Q+  P EAL LFRE+    V  P+ ++V+  +
Sbjct: 245 DVLSARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSIL 304

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
            A A +GAL+LG+W+H F++R ++   + V T+L+DMY+KCG + +AR++F  + KK   
Sbjct: 305 PAIATLGALELGEWVHRFVQRKKLDAAVNVCTSLVDMYLKCGEISKARKVFSEIPKKETA 364

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434
           ++N +I G  MNG   EAL+ F++M+ EGI  +D+   GVL ACSH GL  EG   F++M
Sbjct: 365 TWNALINGFAMNGLASEALEAFSEMQQEGIKPNDITMTGVLSACSHGGLVEEGKGQFKAM 424

Query: 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTL 494
               G+ PK+EHY CLVDLL RAG L++A N+++SMP + N  +  +   AC    +VT 
Sbjct: 425 I-ESGLSPKIEHYGCLVDLLGRAGCLDEAENLIKSMPFEANGIILSSFSFACGFSNDVTR 483

Query: 495 AEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDG 554
           A+ V+   V ++  + G+YV++ N+YA    W+    I  +MR+R  KKE G S IE+D 
Sbjct: 484 AQRVLNQAVNMEPGNNGIYVMMRNLYAMEERWKDVKEINGLMRRRGAKKEVGSSAIEVDS 543

Query: 555 NIKEFVSGEIFDVQSEELELVI 576
            + EF+SG I   Q + +E VI
Sbjct: 544 RVSEFISGGIAHPQLDVIESVI 565


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/562 (40%), Positives = 345/562 (61%), Gaps = 6/562 (1%)

Query: 23  KTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLN-MDQAERLFNQIYQPNTYMHN 81
           KT+  + QI AQ+  N      +   +L+   T   TL  M  A +LF+QI  PN  + N
Sbjct: 112 KTSKQVHQIQAQIIANGFQYNEYITPKLV---TICATLKRMTYARQLFDQIPDPNIALWN 168

Query: 82  TMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKM 141
           +M RGY QS + ++ +  +  MK   +  + +T+P VLK+CG +  L+EG ++H  ++K 
Sbjct: 169 SMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKC 228

Query: 142 GFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVF 201
           GF  + FV   LI MYS  G +G A  +F     +++V+W  ++ G++   ++  AR +F
Sbjct: 229 GFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLF 288

Query: 202 DEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQ 261
           D  P++D + W+IM+ GY  + GD+  AR LF  MP +D++ WN+++ GYA  G++ A +
Sbjct: 289 DLAPERDVVLWNIMVSGY-IEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEALE 347

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQV 320
            LF EMPERN+FSW+ +I GYA +G   E L  F+ ML +  V P+  +++  +SACA++
Sbjct: 348 GLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARL 407

Query: 321 GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMI 380
           GALDLGKW+HV+ + S +  ++ V  AL+DMY KCG ++ A  +F  M  K++IS+N +I
Sbjct: 408 GALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLI 467

Query: 381 AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGI 440
            GL M+  G +AL  F QM+  G   D + F+G+L AC+H GL  +G+  FQSM     I
Sbjct: 468 GGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLI 527

Query: 441 EPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVE 500
            P++EHY C+VD+L+RAG LEQA   V  MP++ +  +W  LL ACR ++NV LAE+ ++
Sbjct: 528 MPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQ 587

Query: 501 GLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
            L+EL+  +   YV+LSNIY DAG WE   R++  MR    KK  G S+IE++  + EF 
Sbjct: 588 RLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFY 647

Query: 561 SGEIFDVQSEELELVIQSFVKT 582
           S +    Q EE+  V++  VK 
Sbjct: 648 SLDERHPQIEEIYGVLRGLVKV 669


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 239/618 (38%), Positives = 366/618 (59%), Gaps = 49/618 (7%)

Query: 8   KFSLKNPL-VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLN-MDQA 65
           +F L+NP  + LL+  K+    LQI AQ   N L  + F++S+L+   +   + + +D +
Sbjct: 4   RFLLENPSSLCLLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHS 63

Query: 66  ERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV-DNYTYPFVLKACGV 124
             LF+QI  PN +M NTMIRGY++S NP++A+  Y++M  KG+   +N+T+PF+L +C  
Sbjct: 64  RLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCAR 123

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L  L  G E+H  ++K GF  D+FV N LI +YS  G++  AR++F+ S ++DLVS+N +
Sbjct: 124 LSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTM 183

Query: 185 LRGFVECGEMGKAREVFDEMPQK----DAISW---------------------------- 212
           ++G+ E  +   A  +F EM       D  ++                            
Sbjct: 184 IKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLR 243

Query: 213 ---------SIMIDGYRKKKGDISSARILFEHMPI-KDLISWNSMIDGYAKIGDLVAAQQ 262
                    S ++D Y  K G I+ A  +F  M   K   +W+SM+ GYA+ G++  A++
Sbjct: 244 SIDSNILLKSAIVDMY-AKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARK 302

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           LFN M ER+V SW+ MI GY+Q G   EAL LF+EM   G++PD ++++  +SACA++GA
Sbjct: 303 LFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGA 362

Query: 323 LDLGKWI-HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--KNVISYNVM 379
            DLGK + H +++      + I+  A++DMY KCGS+D A  IF  + K  K    +N M
Sbjct: 363 FDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSM 422

Query: 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439
           IAGL  +G GE A+  F ++ + G+  D++ F+GVL AC HSGL  EG ++F+SM    G
Sbjct: 423 IAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYG 482

Query: 440 IEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVV 499
           I+P++EHY C+VDLL R G LE+A ++V+ MP + N  +W  LL ACR H NV + E+  
Sbjct: 483 IKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAG 542

Query: 500 EGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEF 559
           + L+E++A     YVLLSNI ADA  WE A ++RK+M    I+K  G S IE+ G I  F
Sbjct: 543 QKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRF 602

Query: 560 VSGEIFDVQSEELELVIQ 577
           V+ +    Q +E+EL+++
Sbjct: 603 VASDKSHPQGKEIELMLK 620


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/590 (37%), Positives = 348/590 (58%), Gaps = 43/590 (7%)

Query: 17  SLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPN 76
           +L Q   +   + QI AQ+   + + +P+  S+L  +    +   +D A ++F+QI QPN
Sbjct: 144 ALFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPN 203

Query: 77  TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDN-YTYPFVLKACGVLMGLVEGTEIH 135
            Y  N +IR    SS+P +++  ++ M        N +T+P ++KA       + G  +H
Sbjct: 204 LYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVH 263

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE--IKDLVSWNLVLRGFVECGE 193
           G  +K  F  DVFV+N LI  Y+ CGH+  A  VFE  E   KD+VSWN ++ GFV+ G 
Sbjct: 264 GMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGY 323

Query: 194 MGKAREVFDEMPQK----DAISWSIMIDGYRK---------------------------- 221
             KA ++F+ M  +    +A++   ++    K                            
Sbjct: 324 PDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNA 383

Query: 222 ------KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
                 K G++  AR LF++M  +D++SW ++IDGYAK+ +   A+ +F+ MP +++ +W
Sbjct: 384 TIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAW 443

Query: 276 SIMIDGYAQHGNPKEALYLFREMLC--QGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
           +++I GY Q G PKEAL +FRE+     G RPD ++++  +SACAQ+GA+D+G+WIH ++
Sbjct: 444 NVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYI 503

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
           K+ RI ++  + T+LIDMY K G +++A  +F+S+  K+V  ++ MIAGL M+G GE A+
Sbjct: 504 KKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAI 563

Query: 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
           + F  M+   +  + + F  +L ACSHSGL  EG R+F  M+R  G+ PK +HYSC+VD+
Sbjct: 564 ELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDV 623

Query: 454 LSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLY 513
           L RAG LE+AL  +E MP+ P+ ++WG LL AC  H N+ LAE     L+E++  + G Y
Sbjct: 624 LGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAY 683

Query: 514 VLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           VLLSN+YA  G WE    +R+ MR   +KKETG S IEIDG + EF+ G+
Sbjct: 684 VLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVGD 733



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 124/528 (23%), Positives = 234/528 (44%), Gaps = 78/528 (14%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
            K+ +V+   + +    + Q L      D++ +PF             + N D    + +
Sbjct: 58  FKDSIVTRASVPRGVVAVGQCLTVKGAEDVLNKPFAFEL---------STNNDTMYFIAD 108

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
              +   ++ N++ R   Q S+P  A +   N+  + L           + C     L  
Sbjct: 109 SEKEKEEWI-NSIGRSIVQHSSPTPASATATNVGDRALF----------QQCTSFKQL-- 155

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLI--GMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
             +IH ++++   L D +  + L     +S    +  AR VF+     +L SWN+++R  
Sbjct: 156 -KQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRAL 214

Query: 189 VECGEMGKAREVFDEM-------PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-- 239
               +  ++  VF  M       P K   ++ ++I    +++  +    +    M IK  
Sbjct: 215 ATSSDPIQSVLVFIRMLHDSPFGPNK--FTFPVLIKAVAERRCFLVGKAV--HGMAIKTS 270

Query: 240 ---DLISWNSMIDGYAKIGDLVAAQQLFN--EMPERNVFSWSIMIDGYAQHGNPKEALYL 294
              D+   NS+I  YA  G L  A  +F   E   +++ SW+ M+ G+ Q G P +AL L
Sbjct: 271 FGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDL 330

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           F  M  +GV P+ ++++  +SACA+   L LG+ +  ++ R+ + M++ V  A IDM++K
Sbjct: 331 FERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVK 390

Query: 355 CGSLDEARRIFYSMTKKNVIS-------------------------------YNVMIAGL 383
           CG ++ AR +F +M K++V+S                               +NV+I+G 
Sbjct: 391 CGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGY 450

Query: 384 GMNGFGEEALKCFA--QMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
             +G  +EAL  F   Q+   G   D +  L  L AC+  G    G  I   +K+   I+
Sbjct: 451 EQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKE-RIQ 509

Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
                 + L+D+ S++G++E+A+ +  S+  K ++ +W  ++     H
Sbjct: 510 LNRNLATSLIDMYSKSGDVEKAIEVFHSIGNK-DVFVWSAMIAGLAMH 556


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/580 (36%), Positives = 356/580 (61%), Gaps = 4/580 (0%)

Query: 1   MKTLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL 60
           M  L   +  ++   ++LL+  K    + QI AQ+ T+ L    F     + + +    +
Sbjct: 1   MVVLNPVQRIVEEKFITLLRSCKNYERLHQIQAQIVTHGLEHNDFVAPNFITTCSRFKRI 60

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +   A +LF++I QPNT   N M RGY Q+ + +  +  +  + R   + + +T+P ++K
Sbjct: 61  H--HARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIK 118

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           +CG L G+ EG E+H    K GF  + FV   LI MYSK G +  A  VF     +++V 
Sbjct: 119 SCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVV 178

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKD 240
           W  ++ G++ CG++   R +FD  P++D + WS++I GY + K ++++AR LF+ MP +D
Sbjct: 179 WTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVLISGYIESK-NMAAARELFDKMPNRD 237

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
            +SWN+M++GYA  G++   +++F+EMPERNVFSW+ +I GY ++G   E L  F+ ML 
Sbjct: 238 TMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLV 297

Query: 301 QG-VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
           +G V P+  +++  +SAC+++GALD+GKW+HV+ +      ++ V   LIDMY KCG ++
Sbjct: 298 EGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIE 357

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
            A  +F  + +K++IS+N +I GL ++G   +AL  F +M++EG   D + F+G+L AC+
Sbjct: 358 NAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACT 417

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           H GL  +G+  F+SM  H  I P++EHY C+VDLL RAG L+QALN +  MP++P+  +W
Sbjct: 418 HMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIW 477

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
             LL ACR ++NV +AE+ ++ L+EL+ ++   +V++SNIY D G  E   R++  MR  
Sbjct: 478 AALLGACRLYKNVEIAELALQRLIELEPNNPANFVMVSNIYKDLGRSEDVARLKIAMRDT 537

Query: 540 KIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSF 579
             +K  G SVIE + ++ EF S +    ++E +  V++  
Sbjct: 538 GFRKLPGCSVIECNDSVVEFYSLDERHSETESIYRVLKGL 577


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/590 (36%), Positives = 350/590 (59%), Gaps = 42/590 (7%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           ++S +    ++  + ++ A++    L  +PF+ S+L  +    +   +D A  LF+QI Q
Sbjct: 28  ILSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQ 87

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGL-LVDNYTYPFVLKACGVLMGLVEGTE 133
           PN Y  NT+IR Y  SS+P ++   ++++  K   L + +T+PFV+KA   L     GT 
Sbjct: 88  PNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTA 147

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           +HG  +K+ F  D++++N L+  Y  CG +  A  +F+G   KD+VSWN ++  F +   
Sbjct: 148 VHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNC 207

Query: 194 MGKAREVFDEMPQKDAISWSI--------------------------------------- 214
              A E+F +M +++ +  S+                                       
Sbjct: 208 PEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNA 267

Query: 215 MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
           M+D Y  K G +  A+ LF+ MP +D+ SW  M+DGYAK+GD  AA+ +FN MP + + +
Sbjct: 268 MLDMY-TKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAA 326

Query: 275 WSIMIDGYAQHGNPKEALYLFREM-LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
           W+++I  Y Q+G PKEAL +F E+ L +  +PD ++++  +SACAQ+GA+DLG WIHV++
Sbjct: 327 WNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYI 386

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
           KR  I ++  + ++L+DMY KCGSL++A  +FYS+ +++V  ++ MIAGLGM+G G+ A+
Sbjct: 387 KREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAI 446

Query: 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
             F +M+   +  + + F  VL ACSH+GL  EG   F  M+   G+ P+++HY+C+VD+
Sbjct: 447 DLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDI 506

Query: 454 LSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLY 513
           L RAG LE+A+ ++  M   P+ ++WG LL AC  H NV L E+  + L++L+  + G  
Sbjct: 507 LGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAI 566

Query: 514 VLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           VLLSNIYA  G WE    +RK+MR  ++KKE G S IE +GN+ EF+ G+
Sbjct: 567 VLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGD 616


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/596 (38%), Positives = 352/596 (59%), Gaps = 48/596 (8%)

Query: 13  NPLVSLLQISKTTT--HILQILAQLTTNDLITEPFTLSQLLMS--LTSPNTLNMDQAERL 68
           NP    + I K     H+ Q+ A +    L  +P + ++L  +  L+SP++L  D A ++
Sbjct: 29  NPSTVPILIDKCANKKHLKQLHAHMLRTGLFFDPPSATKLFTACALSSPSSL--DYACKV 86

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDN-YTYPFVLKACGVLMG 127
           F+QI +PN Y  NT+IR +  S  P + L  ++ M  +     N YT+PFV+KA   +  
Sbjct: 87  FDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSS 146

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
           L+ G  IHG V+K  F  D+F+ N LI  YS  G +  A  VF     KD+VSWN ++ G
Sbjct: 147 LLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISG 206

Query: 188 FVECGEMGKAREVFDEMPQKDA-------------------------------------- 209
           FV+ G   +A ++F  M  ++A                                      
Sbjct: 207 FVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDIN 266

Query: 210 -ISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
            I  + M+D Y  K G +  AR LF+ M  KD++SW +MIDGYAK+GD  AA+++F+ MP
Sbjct: 267 LILSNAMLDMY-VKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMP 325

Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREM-LCQGVRPDVISVMGAISACAQVGALDLGK 327
             ++ +W+ +I  Y Q+G PKEAL +FRE+ L +  +P+ +++   ++ACAQ+GA+DLG 
Sbjct: 326 REDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGG 385

Query: 328 WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
           WIHV++K+  I ++  + T+LIDMY KCG L++A  +FYS+ +++V  ++ MIAGL M+G
Sbjct: 386 WIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHG 445

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
            G  A+  F++M+   +  + + F  +L ACSHSGL  EG   F  M+   G+ P  +HY
Sbjct: 446 HGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHY 505

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
           +C+VD+L RAG LE+A+ ++E MP+ P+ ++WG LL ACR + NV LAE+    L+E  +
Sbjct: 506 ACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDS 565

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           ++ G YVLLSNIYA AG W+   R+R+ M+   ++KE G S IE++G I EF+ G+
Sbjct: 566 NNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGD 621


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/575 (38%), Positives = 343/575 (59%), Gaps = 4/575 (0%)

Query: 8   KFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAER 67
           ++ L+   +SLL+  KT   + ++ AQ+ T+      +    ++ S        M  A  
Sbjct: 21  RWVLEEHFISLLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLK--QMAHARH 78

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           LF+    P   + N + RGY  ++  ++ +  +  MK   +  + +T+P VLK+C  +  
Sbjct: 79  LFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGA 138

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
            VEG EIH EV+K G   + FV   LI +YS    +G A  +F G   +++V+W  ++ G
Sbjct: 139 FVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISG 198

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM 247
           ++ C  +  AR +FD  P++D + W+IM+ GY  + GD+ +AR LF+ MP +D +SWN+M
Sbjct: 199 YILCNRVALARRLFDLAPERDVVLWNIMVSGY-IEIGDMKAARKLFDTMPYRDTMSWNTM 257

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPD 306
           ++GYA  GD+ A +QLF EMPERNVFSW+ +I GYA +G   E L  F+ ML  G V P+
Sbjct: 258 LNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPN 317

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
             +++  +SACA++GALDLGKW+HV+         + V  ALIDMY KCG ++ A  +F 
Sbjct: 318 DATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFE 377

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
           SM  K++I++N MI GL  +G G +AL  F QM+  G   D + F+GVL +C+H GL  E
Sbjct: 378 SMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEE 437

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G   F SM     I P++EHY C+VDL  RAG L++A+  V+ MPM+ +  +W  LL AC
Sbjct: 438 GTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGAC 497

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           R ++N+ LAE+ ++ L+ L+  +   YVLLSNIY D G W+   R++ +MR    KK  G
Sbjct: 498 RIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPG 557

Query: 547 RSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
            S+IE++ ++ EF S +    QS+E+  V++  +K
Sbjct: 558 CSLIEVNDSVVEFYSLDERHSQSKEIYGVLKGLMK 592


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/575 (38%), Positives = 343/575 (59%), Gaps = 4/575 (0%)

Query: 8   KFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAER 67
           ++ L+   +SLL+  KT   + ++ AQ+ T+      +    ++ S        M  A  
Sbjct: 63  RWVLEEHFISLLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLK--QMAHARH 120

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           LF+    P   + N + RGY  ++  ++ +  +  MK   +  + +T+P VLK+C  +  
Sbjct: 121 LFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGA 180

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
            VEG EIH EV+K G   + FV   LI +YS    +G A  +F G   +++V+W  ++ G
Sbjct: 181 FVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISG 240

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM 247
           ++ C  +  AR +FD  P++D + W+IM+ GY  + GD+ +AR LF+ MP +D +SWN+M
Sbjct: 241 YILCNRVALARRLFDLAPERDVVLWNIMVSGY-IEIGDMKAARKLFDTMPYRDTMSWNTM 299

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPD 306
           ++GYA  GD+ A +QLF EMPERNVFSW+ +I GYA +G   E L  F+ ML  G V P+
Sbjct: 300 LNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPN 359

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
             +++  +SACA++GALDLGKW+HV+         + V  ALIDMY KCG ++ A  +F 
Sbjct: 360 DATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFE 419

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
           SM  K++I++N MI GL  +G G +AL  F QM+  G   D + F+GVL +C+H GL  E
Sbjct: 420 SMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEE 479

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G   F SM     I P++EHY C+VDL  RAG L++A+  V+ MPM+ +  +W  LL AC
Sbjct: 480 GTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGAC 539

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           R ++N+ LAE+ ++ L+ L+  +   YVLLSNIY D G W+   R++ +MR    KK  G
Sbjct: 540 RIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPG 599

Query: 547 RSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
            S+IE++ ++ EF S +    QS+E+  V++  +K
Sbjct: 600 CSLIEVNDSVVEFYSLDERHSQSKEIYGVLKGLMK 634


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/602 (37%), Positives = 350/602 (58%), Gaps = 41/602 (6%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           + NP + +++   T   + QI A++T   +IT  F +S+++      ++ ++  A  +FN
Sbjct: 156 ITNPTLLIMESCSTMRQLKQIQARMTLTGIITHAFPVSRVIAFCALAHSGDLHYAHTIFN 215

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
           ++ QPNT+M NTMIRGY  +  P  A SF+V M +  + +D+ ++ F LKAC     + E
Sbjct: 216 RVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQFETVFE 275

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G  ++  V KMGF C++ V NGLI  Y++ G +  AR VF+ S  KD+V+W  ++ G+  
Sbjct: 276 GESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAA 335

Query: 191 --------------------------------CGEMGK---AREVFDEMPQKD-AISWSI 214
                                           C +MG     + V +++ +K+   S S+
Sbjct: 336 HDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSL 395

Query: 215 ---MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271
              ++D Y K    +  AR LF+ M  KD+ SW SM++GYAK GDL +A++ F++ P +N
Sbjct: 396 HNALLDMYVKCDC-LVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKN 454

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV 331
              WS MI GY+Q+  PKE+L LF EM+ +GV P   +++  +SAC Q+  L+LG WIH 
Sbjct: 455 AVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQ 514

Query: 332 FMKRSRI-TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
           +    +I  + + ++ A++DMY KCGS+D A  +F +M ++N+IS+N MIAG   NG  +
Sbjct: 515 YFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAK 574

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
           +A+  F QM   G   +++ F+ +L ACSH GL +EG   F +M+R  GI+P+  HY+C+
Sbjct: 575 QAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACM 634

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           VDLL R G LE+A  ++ +MPM+P  A WG LL ACR H NV LA +    L+ L  +D 
Sbjct: 635 VDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLRLDPEDS 694

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570
           G+YVLL+N  A+   W    R+R +M+ + +KK  G S+IEIDG   EF+  +    QSE
Sbjct: 695 GIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGYSLIEIDGGFVEFLVADESHPQSE 754

Query: 571 EL 572
           E+
Sbjct: 755 EI 756


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/521 (39%), Positives = 329/521 (63%), Gaps = 2/521 (0%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           M+ A ++F+QI +PN  + N M RGY+Q+ + +  +  +  MK   ++ + +T+P +LK+
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  +  L EG E+H  V+K GF  + FV   LI MY+  G +  A  VF     +++++W
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
             ++ G++ C ++  AR +FD  P++D + W+ MI GY + K D+  AR LF+ MP KD+
Sbjct: 121 TAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAK-DVIRARELFDKMPNKDV 179

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
           +SWN++++GYA  GD++A ++LF EMPERNVFSW+ +I GY ++G   E L  F+ ML  
Sbjct: 180 MSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVD 239

Query: 302 G-VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
           G V P+  +++  +SACA++GALDLGKW+HV+ +      ++ V+ AL+DMY KCG ++ 
Sbjct: 240 GTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVET 299

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           A  +F SM  K++IS+N +I GL ++G G +AL  F+ M+  G   D + F+G+L AC+H
Sbjct: 300 ALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTH 359

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
            GL  +G+  F+SM     I P++EHY C+VDLL RAG L  A++ +  MP++ +  +W 
Sbjct: 360 MGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWA 419

Query: 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540
            LL ACR ++NV LAE+ +E L+E +  +   YV+LSNIY D G W+   R++  MR   
Sbjct: 420 ALLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVAMRDTG 479

Query: 541 IKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
            KK  G S+IE++  + EF S +    + E++   +++  K
Sbjct: 480 FKKLPGCSLIEVNDYLVEFYSLDERHPEKEQIYGTLRTLTK 520


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/604 (37%), Positives = 351/604 (58%), Gaps = 41/604 (6%)

Query: 9   FSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERL 68
           + L NPL+SLL+  K+ + + QI AQ+    LI + F  S+L+       + N+D   ++
Sbjct: 50  YVLSNPLLSLLENCKSFSQLKQIQAQMILTGLILDGFASSRLISFCAISESRNLDYCIKI 109

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM-KRKGLLVDNYTYPFVLKACGVLMG 127
            N +  PN +  N +IRG  +S NPQK L  Y  M  R G   DNYTY F+ K C  L+ 
Sbjct: 110 LNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVL 169

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
              G EI G+V+KMGF  D+++ NG+I M    G  G A  VF+   ++DLVSWN ++ G
Sbjct: 170 SYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLING 229

Query: 188 FVECGE----MGKAREVFDEMPQKDAISW------------------------------- 212
           +V   +    MG  +++  E  + D ++                                
Sbjct: 230 YVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLK 289

Query: 213 ----SIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
               + ++D Y  K GD+ + ++LF++M  K ++SW +MI GYAK G L  A +LF++MP
Sbjct: 290 ISLVNALMDMY-VKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMP 348

Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328
           E+NV +W+ MI    Q     EAL LFREM    ++PD ++++  +SAC+Q+GALD G W
Sbjct: 349 EKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMW 408

Query: 329 IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
            H ++K+  +++D+ + TALIDMY KCG++ +A ++F  M ++N +++  +I GL + G 
Sbjct: 409 THNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGN 468

Query: 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
             +A+  F++M   G+  D++ FLGVL AC H GL  EG + F  MK    + P+ +HYS
Sbjct: 469 VNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYS 528

Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508
           C+V+LL RAG LE+A  ++++MPM+ +  +WG L  AC  H+N+ + E     L++L   
Sbjct: 529 CMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGERAASKLLDLDPH 588

Query: 509 DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQ 568
           D G+YVLL+N+Y +AG WE A  IRKMM +R ++K  G S IE++G I EF+  +    Q
Sbjct: 589 DSGIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSIEVNGIINEFIVRDKSHPQ 648

Query: 569 SEEL 572
           SE++
Sbjct: 649 SEQI 652



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 201/431 (46%), Gaps = 74/431 (17%)

Query: 112 NYTYPFVLKACGVLMGLVEGT-------EIHGEVVKMGFLCDVFVVNGLIGM--YSKCGH 162
           N T+ +VL     L+ L+E         +I  +++  G + D F  + LI     S+  +
Sbjct: 45  NTTHTYVLS--NPLLSLLENCKSFSQLKQIQAQMILTGLILDGFASSRLISFCAISESRN 102

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMID--GYR 220
           +     +    +  ++ SWN V+RG VE            E PQK  + +  M+   G R
Sbjct: 103 LDYCIKILNNLQNPNVFSWNAVIRGCVE-----------SENPQKGLVLYKRMLTRAGCR 151

Query: 221 KKKGDIS-----SARILFEHMPI------------KDLISWNSMIDGYAKIGDLVAAQQL 263
                 S      A ++  +M              KD+  +N +I     +G+   A ++
Sbjct: 152 PDNYTYSFLFKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKV 211

Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL 323
           F+E   R++ SW+ +I+GY +   P+EA+ ++++M+ + V+PD ++++G +SACAQ+ +L
Sbjct: 212 FDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESL 271

Query: 324 DLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383
            LG+ IH +++ S + + + +  AL+DMY+KCG L+  + +F +M KK V+S+  MI G 
Sbjct: 272 KLGREIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGY 331

Query: 384 GMNGFGE-------------------------------EALKCFAQMETEGIPKDDLIFL 412
             NG  +                               EAL+ F +M+   +  D +  L
Sbjct: 332 AKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTML 391

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
             L ACS  G    G      +K+H  +   +   + L+D+ ++ G + +AL +   MP 
Sbjct: 392 HCLSACSQLGALDTGMWTHNYIKKH-NLSLDVALGTALIDMYAKCGNMTKALQVFNEMPR 450

Query: 473 KPNLALWGTLL 483
           + +L  W  ++
Sbjct: 451 RNSLT-WTAII 460


>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Vitis vinifera]
          Length = 635

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/609 (38%), Positives = 355/609 (58%), Gaps = 42/609 (6%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAER-LFNQ 71
           +P + LL  SKT   + QI ++L T   I  P   ++++++ +S +   + +  R LF  
Sbjct: 15  HPTLILLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLFMS 74

Query: 72  IY-------QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
            +       Q N ++ N +I+ ++   +P++A   +  M   G+ VD +++  VLKAC  
Sbjct: 75  RHFGRKHRKQDNPFLWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSR 134

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L  + EG +IHG + +M    DVF+ N L+ +Y +CG +G AR +F+    +D VS+N +
Sbjct: 135 LGLIKEGMQIHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSM 194

Query: 185 LRGFVECGEMGKAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLI 242
           + G+V+ G +  ARE+FD MP  QK+ ISW+ MI GY + +  +  A  LFE MP +DLI
Sbjct: 195 IDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLI 254

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA------------------- 283
           SWNSMIDG  K G +  A  LFN+MP+R+V SW+ M+DGYA                   
Sbjct: 255 SWNSMIDGCVKCGKMENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERD 314

Query: 284 ------------QHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIH 330
                       Q+G+  EAL  F +ML +  + PD  +++  +SA AQ+G  D G  +H
Sbjct: 315 VISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALH 374

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
            +++ +  ++   +  ALIDMY KCGS+D A  +F  +  K++  +N +I GL ++G GE
Sbjct: 375 CYIEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLAIHGLGE 434

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
            A + F +ME   +  DD+ F+GVL AC+H+GL  EG   F+ M+R   +EPKL+HY C+
Sbjct: 435 VAFELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQHYGCM 494

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           VD+L RAG +E+A   VE MP++PN  +W TLL ACRNH+N T+ E V + L+ + + + 
Sbjct: 495 VDILGRAGHVEEAKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYNP 554

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570
             YVLLSNIYA  GMW    RIR MM++R +KK  G S IE++GN+ EF   +    Q  
Sbjct: 555 SSYVLLSNIYAGFGMWNDVYRIRMMMKQRDLKKIPGCSQIELEGNVHEFFVRDKSHPQVR 614

Query: 571 ELELVIQSF 579
           E+  ++ S 
Sbjct: 615 EIYSMLDSL 623


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/603 (38%), Positives = 340/603 (56%), Gaps = 45/603 (7%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERLFNQ 71
           +P ++LL   KT   + QI +Q+    L    F LS+L+     SP+  ++  A  LF  
Sbjct: 29  HPSLTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHG-DLSYALSLFKT 87

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           I  PN  + N MIRG + S +P  AL +YV+M   G   + YT+P + K+C  + G  EG
Sbjct: 88  IRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEG 147

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            ++H  V+K+G   + FV   LI MY++ G +  AR VF+ S ++D VS+  ++ G+   
Sbjct: 148 KQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASK 207

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLI--------- 242
           G + +ARE+FDE+P +D +SW+ MI GY  + G +  A   FE M    +          
Sbjct: 208 GFLDEARELFDEIPVRDVVSWNAMISGY-AQSGRVEEAMAFFEEMRRAKVTPNVSTMLSV 266

Query: 243 ------------------SW-------------NSMIDGYAKIGDLVAAQQLFNEMPERN 271
                             SW             N +ID Y K GDL  A  LF ++ ++N
Sbjct: 267 LSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKN 326

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV 331
           V SW++MI GY      KEAL LFR M+   + P+ ++ +  + ACA +GALDLGKW+H 
Sbjct: 327 VVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHA 386

Query: 332 FMKRSRITMDMIVQ--TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFG 389
           ++ ++  +M   V   T+LIDMY KCG L  A+RIF  M  K++ ++N MI+G  M+G  
Sbjct: 387 YVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHT 446

Query: 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449
           + AL  F++M +EG   DD+ F+GVL AC H+GL + G R F SM +   + PKL HY C
Sbjct: 447 DTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGC 506

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509
           ++DL  RAG  ++A  +V++M MKP+ A+W +LL ACR H+ + LAE V + L EL+ ++
Sbjct: 507 MIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPEN 566

Query: 510 CGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQS 569
              YVLLSNIYA AG WE   +IR  +   ++KK  G S IE+D  + EF+ G+    QS
Sbjct: 567 PSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQS 626

Query: 570 EEL 572
            E+
Sbjct: 627 NEI 629


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/598 (37%), Positives = 346/598 (57%), Gaps = 39/598 (6%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           + L S L  + + TH+ Q+ AQ+  + L      L +L++S  + ++ ++D A  +FN I
Sbjct: 24  HTLFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSS-SLDYALSVFNLI 82

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
            +P T++ N  +R  ++S  P+K L  Y  M+ +GL VD +++P +LKA   +  LVEG 
Sbjct: 83  PKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGL 142

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           EIHG   K+GF  D FV  GL+ MY+ CG +  AR +F+    +D+V+W++++ G+ + G
Sbjct: 143 EIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSG 202

Query: 193 EMGKAREVFDEMPQKDA-------------------ISWSIMIDGYRKKK---------- 223
               A  +F+EM   +                    +S+  MI  +  +           
Sbjct: 203 LFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQS 262

Query: 224 ---------GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
                    G +  A  LFE M  K+L++  +M+ GY+K+G +  A+ +FN+M ++++  
Sbjct: 263 ALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVC 322

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           WS MI GYA+  +P+EAL LF EM   G++PD ++++  I+ACA +GALD  KWIH+F+ 
Sbjct: 323 WSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVD 382

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
           ++     + +  ALI+MY KCGSL+ ARRIF  M +KNVIS+  MI+   M+G    AL+
Sbjct: 383 KNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALR 442

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
            F QME E I  + + F+GVL ACSH+GL  EG +IF SM     I PK  HY C+VDL 
Sbjct: 443 FFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLF 502

Query: 455 SRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYV 514
            RA  L +AL +VE+MP+ PN+ +WG+L+ ACR H  + L E   + L+EL  D  G +V
Sbjct: 503 GRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHV 562

Query: 515 LLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            LSNIYA A  WE   ++RK+M+ + I KE G S  E++  I EF+  +     ++E+
Sbjct: 563 FLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADEI 620


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/620 (36%), Positives = 354/620 (57%), Gaps = 43/620 (6%)

Query: 4   LAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMD 63
           L+ +    K   + LL+  K+  H+ QI  Q+          TL++ ++  T P+  N+ 
Sbjct: 24  LSTSSHFTKKSCIFLLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLH 83

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            AER+FN I  P  +++N +I+ +T++ + +KA+  +  ++ +GL  DN+TYPFV KA G
Sbjct: 84  YAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIG 143

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            L  + EG +++G VVK G   D +V N L+ MY++ G +   R VFE    +D+VSWN+
Sbjct: 144 CLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNV 203

Query: 184 VLRGFVECGEMGKAREVFDEMPQ----------------------------------KDA 209
           ++ G+V+C     A +VF  M Q                                  ++ 
Sbjct: 204 LISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQ 263

Query: 210 ISWSI-----MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
           + ++I     ++D Y  K G +S AR +F  MPIK +I W SM+ GY   G L  A++LF
Sbjct: 264 LGFTIKIGNALVDMY-CKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELF 322

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
              P R+V  W+ MI+GY Q     +A+ LFREM  + V PD  +++  ++ CAQ+G L+
Sbjct: 323 ERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLE 382

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
            GKWIH ++  ++I +D +V TALI+MY KCG ++++  IF  + +K+  S+  +I GL 
Sbjct: 383 QGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLA 442

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444
           MNG   +AL+ FA+M   G+  DD+ F+GVL ACSH GL  EG + F+SM     IEPKL
Sbjct: 443 MNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKL 502

Query: 445 EHYSCLVDLLSRAGELEQALNIVESMPMKPN---LALWGTLLLACRNHQNVTLAEVVVEG 501
           EHY CL+DLL RAG+L++A  ++E  P   N   + L+G LL ACR H NV + E V + 
Sbjct: 503 EHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKR 562

Query: 502 LVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
           LV +++ D  ++ LL+NIYA A  WE   ++R+ M+   +KK  G S +E++G + EF+ 
Sbjct: 563 LVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLV 622

Query: 562 GEIFDVQSEELELVIQSFVK 581
           G+    +  E+  ++ S  K
Sbjct: 623 GDASHPEMREIYSMLDSIAK 642


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/525 (38%), Positives = 322/525 (61%), Gaps = 38/525 (7%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A ++F+QI  P T++ N +IRG  QS  P  A++FY   +  G++ DN T+PF+LKAC  
Sbjct: 40  AHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACAR 99

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           +  L EG ++H  + K+G L D+FV N LI +Y+ CG++  ARSVF+   +KD+VSWN +
Sbjct: 100 INALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSL 159

Query: 185 LRGFVECGEMGKAREVF----DEMPQKDAIS--------------------------WSI 214
           + G+ +C        +F    +E  + D ++                          + I
Sbjct: 160 ICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCI 219

Query: 215 MID--------GYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNE 266
            +D         Y  ++G + SA  +F +M ++++++ N+MI  YAK  D+V+A+++F++
Sbjct: 220 EVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQ 279

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326
           +P++++ SWS MI GY+Q  +  +AL +FR+M    V+PD I +   +S+CA +GALDLG
Sbjct: 280 IPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLG 339

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
           KW+H +++R+ I  D I++ +LIDMYMKCGS  EA ++F  M +K+ +S+N +I GL  N
Sbjct: 340 KWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANN 399

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
           GF +E+L  F  M TEG   + + FLGVLIAC+++ L  EG   F+SMKR   +EP+++H
Sbjct: 400 GFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKH 459

Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506
           Y C+VDLL RAG+LE+AL  +  MP+ P+  +W  LL +C  H +V +AE+V + L EL+
Sbjct: 460 YGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELE 519

Query: 507 ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
             + G Y LLSN YA A  W  A+ +R+ M    ++K  G S +E
Sbjct: 520 PSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 564



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 163/347 (46%), Gaps = 39/347 (11%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N+  A  +F+++   +    N++I GY+Q +  +  L+ +  M+ +G+  D  T   V+ 
Sbjct: 137 NLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVS 196

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L        +   +       DV++ N L+  + + G +  A  VF   +++++V+
Sbjct: 197 ACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVT 256

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR------------------KK 222
            N ++  + +  ++  AR++FD++P+KD ISWS MI GY                   K 
Sbjct: 257 MNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKV 316

Query: 223 KGD---ISSARILFEHMPIKDLISW-----------------NSMIDGYAKIGDLVAAQQ 262
           K D   I+S      H+   DL  W                 NS+ID Y K G    A Q
Sbjct: 317 KPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQ 376

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F EM E++  SW+ +I G A +G  KE+L LF+ ML +G RP+ ++ +G + ACA    
Sbjct: 377 VFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKL 436

Query: 323 LDLGKWIHVFMKR-SRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           ++ G      MKR   +   M     ++D+  + G L++A R    M
Sbjct: 437 VEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITEM 483



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 150/290 (51%), Gaps = 5/290 (1%)

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
           DLV A ++F+++     F W+I+I G AQ   P +A+  +++    G+ PD ++    + 
Sbjct: 36  DLVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILK 95

Query: 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS 375
           ACA++ AL+ G+ +H  + +  +  D+ V  +LI +Y  CG+L  AR +F  M  K+V+S
Sbjct: 96  ACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVS 155

Query: 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMK 435
           +N +I G       ++ L  F  M+ EG+  D +  + V+ AC+  G  +    + + ++
Sbjct: 156 WNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIE 215

Query: 436 RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLA 495
            +C IE  +   + LVD   R G+L+ A  +  +M ++ N+     ++ A    Q++  A
Sbjct: 216 DYC-IEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVR-NIVTMNAMIAAYAKGQDIVSA 273

Query: 496 EVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
             + +   ++   D   +  + + Y+ A  +  AL I + M++ K+K + 
Sbjct: 274 RKIFD---QIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDA 320


>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
          Length = 751

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/582 (37%), Positives = 356/582 (61%), Gaps = 17/582 (2%)

Query: 10  SLKNPL----VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL----- 60
           SL +P+    +SLLQ SKT  ++LQI A +  N L T P   ++ + + +S   L     
Sbjct: 146 SLWSPIERKCLSLLQQSKTRANLLQIHAFMLRNALETNPNLFTKFIATCSSIALLAPLYD 205

Query: 61  ---NMDQAERLFN-QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK-GLLVDNYTY 115
               +  A R+F+ + ++ + ++ N+MI+ Y       ++ + Y +++R      D++T+
Sbjct: 206 PLAGIVHARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTF 265

Query: 116 PFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI 175
             + K+C + M + EG EIH  VV +GF  D++    L+ MY+K G M CAR +F+    
Sbjct: 266 SVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMID 325

Query: 176 KDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEH 235
           +  VSW  ++ G+V  G+M  A ++FD+M +KD+ +++ MID Y  K GD+ SAR LF+ 
Sbjct: 326 RSQVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAY-VKLGDMCSARKLFDE 384

Query: 236 MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
           MP + ++SW  MI GY+  G+L +A+ LF+ MPE+N+FSW+ MI GY Q+  P EAL LF
Sbjct: 385 MPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLF 444

Query: 296 REMLCQ-GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
            EM     + PD ++++  + A A +GALDLG W+H F++R ++     V TALIDMY K
Sbjct: 445 HEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAK 504

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG + ++R +F +M +K   S+N +I    +NG  +EAL  F +M  +G   +++  +GV
Sbjct: 505 CGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGV 564

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L AC+HSGL  EG R F++M+   G+ PK+EHY C+VDLL RAG L++A  ++ESMP + 
Sbjct: 565 LSACNHSGLVEEGKRWFKAMEEF-GLTPKIEHYGCMVDLLGRAGCLQEAEKLMESMPYEA 623

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           N  +  + L AC   ++V  AE V++  ++++A + G Y++L N+YA+   W+ A  ++ 
Sbjct: 624 NGIILSSFLFACGYSKDVARAERVLKEAIKMEAWNDGNYIMLRNLYANEKRWKEADEVKG 683

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
           +MR+  +KKE G S IE+D  + EFV+G+    + E +  V+
Sbjct: 684 LMRRNGVKKEAGCSAIEVDSRVWEFVAGDRVHPKWEAIHSVL 725


>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
          Length = 546

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/544 (39%), Positives = 336/544 (61%), Gaps = 21/544 (3%)

Query: 9   FSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL-NMDQAER 67
           F   + + +LL+   TT+ + Q+ A++    L  + F +SQ L   T  N+L N      
Sbjct: 22  FDTTSSISTLLKACTTTSTLEQVHARIIRKGLHQDHFLISQFL---TLCNSLSNFSYTTS 78

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           +FN +  P+T + NT I+GY+++ +    +S ++ MKR   + D +TYP ++KAC  + G
Sbjct: 79  VFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCG 138

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
           + EG   HG  V+ G   DVFV+  LI +Y KCG + CAR VF+    +++VSW  ++ G
Sbjct: 139 VKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAG 198

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM 247
           +    ++ +AR++FDEMP+K+A+SW+ +I GY  K GD+ SAR +F+ MP ++++S+ +M
Sbjct: 199 YASFSDLVEARKLFDEMPEKNAVSWNAIISGY-VKCGDLRSARKMFDEMPHRNVVSFTTM 257

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           IDGYAK GD+ +A+ +F E PER+V +WS +I               FR      V+PD 
Sbjct: 258 IDGYAKSGDMASARFVFEEAPERDVVAWSALI---------------FRVCAEWNVKPDE 302

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI-VQTALIDMYMKCGSLDEARRIFY 366
             ++  +SAC+Q+G+L+L KW+  ++++S I +    V  ALIDM  KCGS+D A ++F 
Sbjct: 303 FIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFE 362

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            M K+++ISY  M+ GL ++G G +A+  F++M  EG+  DD+ F  +L ACS +GL  E
Sbjct: 363 EMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDE 422

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G   F+SMK    I P  +HY+C+VDLL RAG L++A  +++SMP++P+   WG LL AC
Sbjct: 423 GCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGAC 482

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           + H ++ L EVV + L EL+  + G YVLLSNIYA A  W     +R  MR+R I+K  G
Sbjct: 483 KLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPG 542

Query: 547 RSVI 550
            S I
Sbjct: 543 CSWI 546


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/578 (36%), Positives = 351/578 (60%), Gaps = 38/578 (6%)

Query: 10  SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLF 69
           S +   + L+  S T   + QI AQ+  ++L +    ++QL+ S  S  +L  D A  +F
Sbjct: 38  SPETHFIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSL--DYALSIF 95

Query: 70  NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV 129
                PN ++ N +IRG  ++S  + ++S +V M R  +  D  T PFVLK+   L+ + 
Sbjct: 96  RCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVG 155

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
            G  +HG V+K+G   D FV   L+ MY                               V
Sbjct: 156 LGRCLHGGVMKLGLEFDSFVRVSLVDMY-------------------------------V 184

Query: 190 ECGEMGKAREVFDEMPQKDA----ISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWN 245
           + GE+G   ++FDE PQ++     + W+++I+G   K GD+S A  LFE MP ++  SWN
Sbjct: 185 KIGELGFGLQLFDESPQRNKAESILLWNVLINGC-CKVGDLSKAASLFEAMPERNAGSWN 243

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           S+I+G+ + GDL  A++LF +MPE+NV SW+ MI+G++Q+G+ ++AL +F  ML +GVRP
Sbjct: 244 SLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRP 303

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           + ++V+ A+ AC ++GAL +G+ IH ++  +   ++  + TAL+DMY KCG++  A R+F
Sbjct: 304 NDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVF 363

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
                K++++++VMI G  ++G  ++AL+CF +M++ GI  D++IFL +L ACSHSG   
Sbjct: 364 VETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVD 423

Query: 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
           +G   F+SM+    IEP ++HY+ +VDLL RAG L++AL+ ++SMP+ P+  +WG L  A
Sbjct: 424 QGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCA 483

Query: 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
           CR H+N+ +AE+  E L++L+    G YV LSN+YA  G WE   R+R +M+ R ++K+ 
Sbjct: 484 CRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDP 543

Query: 546 GRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTT 583
           G S IE++G +  FV+G+   V++EE+ L ++    + 
Sbjct: 544 GWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASA 581


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/576 (37%), Positives = 338/576 (58%), Gaps = 11/576 (1%)

Query: 9   FSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERL 68
           F+LK  L+  ++  K      QI AQL T+ L+ + F  S+++    +     ++  +  
Sbjct: 2   FNLKWVLLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANF----VEYGDYA 57

Query: 69  FNQIYQPNT----YMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
            + + Q NT    +  N++I GY     PQ A+S Y  M R G + D +T+P +LKAC  
Sbjct: 58  CDYLEQGNTRLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSN 117

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
             G  EG ++HG VVK+G L D +V N LI  Y  CG   CA  VF+   ++D+VSWN +
Sbjct: 118 FSGSREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSL 177

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARIL---FEHMPIKDL 241
           + GF++ G   +A  VF  M  + +++  + +     + GD+ + + +    E     +L
Sbjct: 178 ISGFMKAGHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNL 237

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
           +  N+M+D Y K G    A+ +F+E+P R++ SW+IMI G  Q  +PK++L LF  M   
Sbjct: 238 VLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTL 297

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
           G+ PD I +   +SACA +G LD G W+H ++ +  I  D+ + TA++DMY KCG ++ A
Sbjct: 298 GISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMA 357

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
            +IFYSM+++N  ++N ++ GL M+G   EAL  F  M   G+  +++ FL +L AC H 
Sbjct: 358 LKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHC 417

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           GL  EG + F +M +   + PKLEHY C++DL  RAG LE+A+ +  +MPMKP++ +WG 
Sbjct: 418 GLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGL 477

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           LL AC    N+ L+  + + ++EL  DD G++VLLSNI A    W +  R+R++M+ R +
Sbjct: 478 LLNACTTVGNIELSHRIQDYILELDHDDSGVFVLLSNISAINQRWSNVTRLRRLMKDRGV 537

Query: 542 KKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           +K  G SVIE+DG   EFV G+I  +Q+EE+  V+ 
Sbjct: 538 RKAPGSSVIEVDGKAHEFVVGDISHLQTEEIYKVLN 573


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/580 (36%), Positives = 345/580 (59%), Gaps = 44/580 (7%)

Query: 12   KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMS--LTSPNTLNMDQAERLF 69
            +N + S   I +    I ++ A    + L    + +S++L S  +  P+ +    A ++F
Sbjct: 454  RNSVKSFFNIVRMEA-IKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVF---AHKVF 509

Query: 70   NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV 129
            +QI  P T++ N +IRG  QS  P  A++FY   +  G++ DN T+PF+LKAC  +  L 
Sbjct: 510  DQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALN 569

Query: 130  EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
            EG ++H  + K+G L D+FV N LI +Y+ CG++  ARSVF+   +KD+VSWN ++ G+ 
Sbjct: 570  EGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYS 629

Query: 190  ECGEMGKAREVF----DEMPQKDAIS--------------------------WSIMID-- 217
            +C        +F    +E  + D ++                          + I +D  
Sbjct: 630  QCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVY 689

Query: 218  ------GYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271
                   Y  ++G + SA  +F +M ++++++ N+MI  YAK  D+V+A+++F+++P+++
Sbjct: 690  LGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKD 749

Query: 272  VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV 331
            + SWS MI GY+Q  +  +AL +FR+M    V+PD I +   +S+CA +GALDLGKW+H 
Sbjct: 750  LISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHE 809

Query: 332  FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391
            +++R+ I  D I++ +LIDMYMKCGS  EA ++F  M +K+ +S+N +I GL  NGF +E
Sbjct: 810  YVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKE 869

Query: 392  ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
            +L  F  M TEG   + + FLGVLIAC+++ L  EG   F+SMKR   +EP+++HY C+V
Sbjct: 870  SLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVV 929

Query: 452  DLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511
            DLL RAG+LE+AL  +  MP+ P+  +W  LL +C  H +V +AE+V + L EL+  + G
Sbjct: 930  DLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSG 989

Query: 512  LYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
             Y LLSN YA A  W  A+ +R+ M    ++K  G S +E
Sbjct: 990  NYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 1029



 Score =  234 bits (598), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 115/317 (36%), Positives = 193/317 (60%), Gaps = 1/317 (0%)

Query: 224 GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
           G ++ +R+ FE MP+K+ +SWN +I G+A  G++  A+ LF  MP RNV SWS MIDGY 
Sbjct: 138 GCLADSRMAFEEMPVKNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYT 197

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
           +   P EA+ LFR M+ +G+ P  I+V+  + A + VG + +G+ +H + ++  +  D+ 
Sbjct: 198 RACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVR 257

Query: 344 VQTALIDMYMKCGSLDEARRIFYSM-TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
           V  +LID+Y K GS+  + R+F  M  ++N++S+  +I+G  M+G   +A++ FA M   
Sbjct: 258 VGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRA 317

Query: 403 GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
           GI  + + FL VL ACSH GL  +G   F+SM     I P ++H+ C++D+L RAG L +
Sbjct: 318 GIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLRE 377

Query: 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522
           A  I+   P++ N  +W TLL  C  +  V + E  ++ ++ L+ +  G +V+LSN+  +
Sbjct: 378 AEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTE 437

Query: 523 AGMWEHALRIRKMMRKR 539
              +  A  +RK++ +R
Sbjct: 438 LRRFSDAEIVRKLVDQR 454



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 179/384 (46%), Gaps = 47/384 (12%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            ++ + +Q++       + +++ Y+   +PQ AL  + +  R     D Y + F LKAC 
Sbjct: 42  HSQLIAHQVFDRRPTPWHALLKAYSHGPHPQDALQLFRH-ARWHAADDTYAFTFALKACA 100

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            L       ++HG VV+ GF    +V   L+ +Y  CG +  +R  FE   +K+ VSWN+
Sbjct: 101 GLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNV 160

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM------- 236
           V+ GF   GE+  AR +F+ MP ++ +SWS MIDGY +    +  A  LF  M       
Sbjct: 161 VITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPV-EAVALFRRMMAEGISP 219

Query: 237 ---------PI------------------KDLISW-----NSMIDGYAKIGDLVAAQQLF 264
                    P                   K+ + W     NS+ID YAKIG +  + ++F
Sbjct: 220 SEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVF 279

Query: 265 NEM-PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL 323
           +EM   RN+ SW+ +I G+A HG   +A+ LF +M   G+RP+ I+ +  + AC+  G +
Sbjct: 280 DEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLV 339

Query: 324 DLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM-TKKNVISYNVMIA 381
           + G  +    +    I  D+     +IDM  + G L EA +I      + N   +  ++ 
Sbjct: 340 EQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLG 399

Query: 382 GLGMNG---FGEEALKCFAQMETE 402
                G    GE  +K    +E E
Sbjct: 400 CCSKYGEVEMGERTMKKILALERE 423



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 100/457 (21%), Positives = 204/457 (44%), Gaps = 37/457 (8%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ A  LF ++   N    + MI GYT++  P +A++ +  M  +G+     T   V+ A
Sbjct: 171 VEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPA 230

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF-EGSEIKDLVS 180
              +  ++ G  +HG   K G + DV V N LI +Y+K G +  +  VF E  + ++LVS
Sbjct: 231 LSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVS 290

Query: 181 WNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMI----DGYRKKKGDISSARIL 232
           W  ++ GF   G   KA E+F +M     + + I++  ++     G   ++G      ++
Sbjct: 291 WTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMI 350

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNP--- 288
           +E+    D+  +  +ID   + G L  A+Q+  + P E N   W  ++   +++G     
Sbjct: 351 YEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMG 410

Query: 289 ----KEALYLFRE----------MLCQGVR-------PDVISVMGAISACAQVGALDLGK 327
               K+ L L RE          ML +  R         ++    ++ +   +  ++  K
Sbjct: 411 ERTMKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRKLVDQRNSVKSFFNIVRMEAIK 470

Query: 328 WIHVFMKRSRITMDMIVQTALIDMY-MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
            +H +   S +       + ++  Y +    L  A ++F  +       +N++I GL  +
Sbjct: 471 RLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQS 530

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
               +A+  + + +  G+  D+L F  +L AC+      EG ++   + +  G+   +  
Sbjct: 531 DAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITK-LGLLSDIFV 589

Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
            + L+ L +  G L  A ++ + M +K ++  W +L+
Sbjct: 590 SNSLIHLYAACGNLCYARSVFDEMVVK-DVVSWNSLI 625


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/600 (36%), Positives = 357/600 (59%), Gaps = 49/600 (8%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           L+SLL+ + + T I QI AQ   + L  +   + +L+      +  ++D A  + +Q   
Sbjct: 2   LLSLLRTATSLTQIHQIHAQTLIHGLPLQTHLIPKLI------DLHSIDYARFVLDQTPS 55

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           P  +  N++IR YT   +PQ +L  Y+ M R      N+T+PFVLKAC  L  ++EG +I
Sbjct: 56  PTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQI 115

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           H  V+++GF  D+FV N LI MY KC  +  AR+ ++    +D VSWN ++ G+V+ G++
Sbjct: 116 HTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQV 175

Query: 195 GKAREVFDEMP-QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-------------- 239
            KAR++F+EMP +++ + W+ MI+GY  K+GD      LF  M +               
Sbjct: 176 EKARDLFEEMPMRRNVVCWTAMINGY-GKEGDFVEMLSLFRQMLVSADEVQPNAATMVCL 234

Query: 240 ---------------------------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
                                      + I   ++ID Y+K GD+  A ++F+ +  +N+
Sbjct: 235 LSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNL 294

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
            SW+ +I G  Q G  +EA+ L+R M  Q V+P+ I+++  +SACA +GAL+LG+ +H++
Sbjct: 295 PSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLY 354

Query: 333 MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
           + R+ + +++I+ TAL+DMY KCG +D+A  IF   ++K+V  +N MI GL  +G G ++
Sbjct: 355 LGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDS 414

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
           L  F+QM   G+  +D+ F+GVL AC+HSGL  EG   F SM    G+ PKLEHY+C+VD
Sbjct: 415 LAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVD 474

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
           LL RAG L++A  +V++M + P+  +WG LL ACR H+N+ LA+ + E ++  +  + G 
Sbjct: 475 LLGRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELADKISETIMASQDPNIGF 534

Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            +LLSNIYA +G W+   R+R+ +++++IKK +G S +E+DG +  FV  +   ++S E+
Sbjct: 535 CILLSNIYASSGRWKDVARVRRQVKEKRIKKPSGCSWVEVDGVVHRFVVEDTTHLKSGEI 594


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/551 (38%), Positives = 331/551 (60%), Gaps = 33/551 (5%)

Query: 14  PLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSL-TSPNTLNMDQAERLFNQI 72
           P++S  +++ + + + Q  A +  + LI   F  S+L+ S+ T+ +   +  A  +F++I
Sbjct: 9   PILSFAEMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRI 68

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
             PN+YM NT+IR Y  S  P+ AL+ +  M    +L D YT+ F LK+CG   G+ EG 
Sbjct: 69  PNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGR 128

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           +IHG V+K G   D+F+ N LI +Y+ CG   C         I+D               
Sbjct: 129 QIHGHVLKTGLGDDLFIQNTLIHLYASCG---C---------IED--------------- 161

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA 252
               AR + D M ++D +SW+ ++  Y  ++G +  A  LF+ M  +++ SWN MI GY 
Sbjct: 162 ----ARHLLDRMLERDVVSWNALLSAY-AERGLMELACHLFDEMTERNVESWNFMISGYV 216

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
            +G L  A+++F E P +NV SW+ MI GY+  G   E L LF +M   GV+PD  +++ 
Sbjct: 217 GVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVS 276

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
            +SACA VGAL  G+W+H ++ ++ I++D  V TAL+DMY KCGS+++A  +F S  +K+
Sbjct: 277 VLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKD 336

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
           + ++N +I+GL  +G G+ AL+ F++M  EG   +++ F+ VL ACS +GL  EG  +F 
Sbjct: 337 ISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFN 396

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV 492
            M    GI+P +EHY C+VDLL R G LE+A  +V+ MP K    +W +LL ACRNH NV
Sbjct: 397 LMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNV 456

Query: 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
            LAE V + L+EL   +   +V LSN+YA  G W+  + +R+ MR + ++K+ G S+IE+
Sbjct: 457 ELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEV 516

Query: 553 DGNIKEFVSGE 563
           DG + EF++GE
Sbjct: 517 DGTVYEFLAGE 527


>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
          Length = 461

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/447 (45%), Positives = 301/447 (67%), Gaps = 3/447 (0%)

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           M RK +  ++YT+P ++K C  +  + +G +IH  ++K GF  D+FV N LI MYS CG 
Sbjct: 1   MVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGR 60

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK 222
           +G AR++FE   I DLV+WN ++ G+V+ GE+G ARE+F+EMP++D  SW+ MI GY   
Sbjct: 61  IGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGY-VG 119

Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
            GD+++A  LF  MP +D++SWN MIDGYA++ ++  A +LFN MP RNV SW+IM+  Y
Sbjct: 120 NGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALY 179

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR-ITMD 341
            +  +  E L +F +M+ + + P+  +++  ++ACA +G LD GKWIH ++K +R I  D
Sbjct: 180 VRIKDYDECLRMFDKMMGETM-PNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPD 238

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
           +++ TAL+ MY KCG++D AR +F  M+ ++V+S+N MI G GM+G  ++AL+ F  ME 
Sbjct: 239 VLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEK 298

Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
            G   +D  F+ VL AC+HSG+  EG+  F  M+R   IEPK+EHY C+VDLL RAG ++
Sbjct: 299 RGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMK 358

Query: 462 QALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521
               ++  MPM+   ALWG LL ACR H N  LAE+V + L+EL+  D G Y+LLSNIYA
Sbjct: 359 DLEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYA 418

Query: 522 DAGMWEHALRIRKMMRKRKIKKETGRS 548
             G W+    +RKMM++R + K TG S
Sbjct: 419 AEGKWDDVEIVRKMMKERGLTKTTGLS 445



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 120/279 (43%), Gaps = 46/279 (16%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A  LF ++ + + +  N+MI GY  + +   A   +  M            PF       
Sbjct: 95  ARELFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLFNKM------------PFR------ 136

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
                                D+   N +I  Y++  +M  A  +F     +++VSWN++
Sbjct: 137 ---------------------DIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIM 175

Query: 185 LRGFVECGEMGKAREVFDE-----MPQKDAISWSIMIDGY--RKKKGDISSARILFEHMP 237
           L  +V   +  +   +FD+     MP +  +   +    +  R  +G    + I    + 
Sbjct: 176 LALYVRIKDYDECLRMFDKMMGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVI 235

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
             D++   +++  YAK G +  A+ +F++M  R+V SW+ MI GY  HG   +AL +F +
Sbjct: 236 EPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLD 295

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS 336
           M  +G  P+  + +  +SACA  G +  G W    M+R+
Sbjct: 296 MEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRA 334



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 77/178 (43%), Gaps = 31/178 (17%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKA------------------LSFYVN 102
           +M  AE LFN++   +    N MI GY Q  N + A                  L+ YV 
Sbjct: 122 DMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVR 181

Query: 103 MKRKG------------LLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFL-CDVFV 149
           +K                + +  T   VL AC  L  L  G  IH  +     +  DV +
Sbjct: 182 IKDYDECLRMFDKMMGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLL 241

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK 207
              L+ MY+KCG M  AR VF+    + +VSWN ++ G+   G+  KA E+F +M ++
Sbjct: 242 STALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKR 299



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%)

Query: 38  NDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKAL 97
           N+ + EP  L    +         MD A  +F+++   +    N+MI GY       KAL
Sbjct: 231 NNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKAL 290

Query: 98  SFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
             +++M+++G + ++ T+  VL AC     ++EG
Sbjct: 291 EMFLDMEKRGPMPNDATFICVLSACAHSGMILEG 324


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/588 (38%), Positives = 341/588 (57%), Gaps = 43/588 (7%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           +P ++LL   K+  ++ QI +Q+    L    F LS+L+         N+  A  LF  I
Sbjct: 33  HPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESI 92

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
            QPN ++ NTMIRG + SS+P  A+ FYV M   G+  ++YT+PF+LK+C  +    EG 
Sbjct: 93  EQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGK 152

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           +IHG V+K+G   D FV   LI MY++ G +G A  VF  S ++D VS+  ++ G+   G
Sbjct: 153 QIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRG 212

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLI---------- 242
            +  AR +F+E+P +DA+SW+ MI GY  + G    A   F+ M   ++           
Sbjct: 213 CLDDARRLFEEIPVRDAVSWNAMIAGY-AQSGRFEEALAFFQEMKRANVAPNESTMVTVL 271

Query: 243 ----------------SW-------------NSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
                           SW             N++ID Y+K GDL  A+ LF  + E+++ 
Sbjct: 272 SACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDII 331

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
           SW++MI GY+   + KEAL LFR+M    V P+ ++ +  + ACA +GALDLGKWIH ++
Sbjct: 332 SWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYI 391

Query: 334 KRSRITM-DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
            +  + + +  + T+LIDMY KCG+++ A+++F  M  K++ S+N MI+GL M+G    A
Sbjct: 392 DKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMA 451

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
           L+ F QM  EG   DD+ F+GVL ACSH+GL   G + F SM     I PKL+HY C++D
Sbjct: 452 LELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMID 511

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
           LL RAG  ++A  ++++M MKP+ A+WG+LL ACR H NV L E   + L EL+ ++ G 
Sbjct: 512 LLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGA 571

Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKK--ETGRSVIEIDGNIKE 558
           YVLLSNIYA AG W+   RIR  +  + +KK  +  + + EID +  E
Sbjct: 572 YVLLSNIYATAGRWDDVARIRTKLNDKGMKKXQDIYKMLDEIDQSFGE 619


>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
 gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
          Length = 894

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/563 (38%), Positives = 334/563 (59%), Gaps = 41/563 (7%)

Query: 28  ILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGY 87
           + ++ A L  + L    + +S+++ S     + ++  A ++F QI  P T++ NT++RG 
Sbjct: 327 VKKLHAHLVVSGLHNCQYAMSKVIRSYALQQS-DLVFAHKVFEQIESPTTFLWNTLLRGL 385

Query: 88  TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV 147
            QS  P+ A+ FY   + KG+  DN T+PFVLKAC       EG ++H  V+K+GFL D+
Sbjct: 386 AQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLDI 445

Query: 148 FVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP-- 205
           FV N LI +Y+ CG + CARS+F+   +KD+VSWN ++ G+ +     +   +F+ M   
Sbjct: 446 FVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQAE 505

Query: 206 --QKDAIS-------------WSI----------------------MIDGYRKKKGDISS 228
             Q D ++             WS+                      +ID Y  + G + S
Sbjct: 506 EVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLID-YYCRIGQLQS 564

Query: 229 ARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNP 288
           A  +F  M  K+ ++ N+MI  YAK G+LV+A+++F+++P +++ SWS MI  Y+Q  + 
Sbjct: 565 AEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHF 624

Query: 289 KEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTAL 348
            ++L LFR+M    V+PD + +   +SACA +GALDLGKWIH +++R+ I  D I++ +L
Sbjct: 625 SDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMENSL 684

Query: 349 IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD 408
           IDM+ KCG + EA ++F  M +K+ +S+N +I GL  NGF +EAL  F  M TEG   ++
Sbjct: 685 IDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRPNE 744

Query: 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468
           + FLGVLIAC++  L  EG   F+ MK    +EP+++HY C+V +LSRAG+LE+A N + 
Sbjct: 745 VTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQLEKAKNFIN 804

Query: 469 SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528
            MP+ P+  +W  LL AC+ H NV +AEV  + L EL   + G Y+LLSNIYA A  W  
Sbjct: 805 EMPLAPDPVVWRILLGACKTHGNVAVAEVATKKLSELDPSNSGDYMLLSNIYASADRWSD 864

Query: 529 ALRIRKMMRKRKIKKETGRSVIE 551
           AL +R+ M    ++K    SV++
Sbjct: 865 ALNVRQWMADTAVRKSPACSVVD 887



 Score =  228 bits (581), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 111/316 (35%), Positives = 196/316 (62%), Gaps = 1/316 (0%)

Query: 236 MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
           MP+K+++SWN +I G+A  G++  A+ LF++MP RNV SW+ +IDGY +     EA+ LF
Sbjct: 1   MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
           R M+  G+ P  I+V+  + A + +G + +G+ +H +  +  I  D  V  +LID+Y K 
Sbjct: 61  RHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKI 120

Query: 356 GSLDEARRIFYSM-TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           GS+  + ++F  M  ++N++S+  +I+G  M+G   EAL+ FA+M   GI  + + FL V
Sbjct: 121 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSV 180

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           + ACSH GL  +G   F+SM     I+P+++H+ C++D+L RAG L +A  I+E +P++ 
Sbjct: 181 INACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEV 240

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           N+ +W  LL  C  +  V + +  ++ + +L+ +  G + +LSN+  + G +  A + RK
Sbjct: 241 NVIVWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARK 300

Query: 535 MMRKRKIKKETGRSVI 550
           ++ +RKI K  G +++
Sbjct: 301 LLDERKIVKVPGLALV 316



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 135/273 (49%), Gaps = 46/273 (16%)

Query: 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFE 234
           +K++VSWN+V+ GF   GE+  AR +FD+MP ++ +SW+ +IDGY  +    + A  LF 
Sbjct: 3   MKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGY-TRACLYAEAVALFR 61

Query: 235 HM------P---------------------------------IKDLISWNSMIDGYAKIG 255
           HM      P                                 + D    NS+ID YAKIG
Sbjct: 62  HMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIG 121

Query: 256 DLVAAQQLFNEM-PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
            +  + ++F+EM   RN+ SW+ +I G+A HG   EAL LF EM   G+RP+ I+ +  I
Sbjct: 122 SVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVI 181

Query: 315 SACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM-TKKN 372
           +AC+  G ++ G  +    +    I  ++     +IDM  + G L EA +I   +  + N
Sbjct: 182 NACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVN 241

Query: 373 VISYNVMIAGLGMNG---FGEEALKCFAQMETE 402
           VI + +++      G    G+ A+K  + +E E
Sbjct: 242 VIVWRILLGCCSKYGEVEMGKRAIKMISDLERE 274



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 129/571 (22%), Positives = 258/571 (45%), Gaps = 54/571 (9%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ A  LF+Q+   N      +I GYT++    +A++ + +M   G+     T   V+ A
Sbjct: 22  IEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAVVPA 81

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF-EGSEIKDLVS 180
              L G++ G  +HG  VK G + D  V N LI +Y+K G +  +  VF E  + ++LVS
Sbjct: 82  ISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVS 141

Query: 181 WNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMID----GYRKKKGDISSARIL 232
           W  ++ GF   G   +A E+F EM     + + I++  +I+    G   ++G      ++
Sbjct: 142 WTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFFKSMV 201

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN---P 288
           +E+    ++  +  +ID   + G L  A+Q+   +P E NV  W I++   +++G     
Sbjct: 202 YEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKYGEVEMG 261

Query: 289 KEALYLFREMLCQ-----GVRPDVISVMGAISACAQVGA-LDLGKWIHV-----FMKRSR 337
           K A+ +  ++  +      V  +V++ +G  S   Q    LD  K + V      + RS 
Sbjct: 262 KRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLLDERKIVKVPGLALVVTRSF 321

Query: 338 ITMDMI-----------------VQTALIDMY-MKCGSLDEARRIFYSMTKKNVISYNVM 379
           + M+ +                   + +I  Y ++   L  A ++F  +       +N +
Sbjct: 322 VMMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPTTFLWNTL 381

Query: 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439
           + GL  +   ++A+  + + + +G+  D++ F  VL AC+ +    EG ++   + +  G
Sbjct: 382 LRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIK-LG 440

Query: 440 IEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL--LACRNHQNVTLAEV 497
               +   + L+ L +  G+L  A +I + M +K ++  W +L+   + RN     LA  
Sbjct: 441 FLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVK-DVVSWNSLIGGYSQRNRFKEVLALF 499

Query: 498 VVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET--GRSVIEIDGN 555
            +    E++AD   +  ++S      G W  A  + + + +  I+ +   G ++I+    
Sbjct: 500 ELMQAEEVQADKVTMVKVISAC-THLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCR 558

Query: 556 IKEFVSGE-IF----DVQSEELELVIQSFVK 581
           I +  S E +F    D  +  L  +I ++ K
Sbjct: 559 IGQLQSAEKVFSQMKDKNTVTLNAMIHAYAK 589


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/599 (36%), Positives = 347/599 (57%), Gaps = 43/599 (7%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
           +SL+    +   + Q  A +    + ++P++ S+L       +  +++ A ++F++I QP
Sbjct: 35  ISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQP 94

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNM--KRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
           N++  NT+IR Y    +P  ++  +++M         + YT+PF++KA   +  L  G  
Sbjct: 95  NSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQS 154

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           +HG  +K     DVFV N LI  Y  CG +  A  VF   + KD+VSWN ++ GFV+ G 
Sbjct: 155 LHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGS 214

Query: 194 MGKAREVFDEMPQKDAISWSI--------------------------------------- 214
             KA E+F +M  +D  +  +                                       
Sbjct: 215 PDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANA 274

Query: 215 MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
           M+D Y  K G I  A+ LF+ M  KD ++W +M+DGYA   D  AA+++ N MP++++ +
Sbjct: 275 MLDMY-TKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVA 333

Query: 275 WSIMIDGYAQHGNPKEALYLFREM-LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
           W+ +I  Y Q+G P EAL +F E+ L + ++ + I+++  +SACAQVGAL+LG+WIH ++
Sbjct: 334 WNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYI 393

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
           K++ I M+  V +ALI MY KCG L++AR +F S+ K++V  ++ MI GL M+G G EA+
Sbjct: 394 KKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAV 453

Query: 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
             F +M+   +  + + F  V  ACSH+GL  E   +F  M+   GI P+ +HY+C+VD+
Sbjct: 454 DMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDV 513

Query: 454 LSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLY 513
           L R+G LE+A+  +E+MP+ P+ ++WG LL AC+ H N++LAE+    L+EL+  + G +
Sbjct: 514 LGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDGAH 573

Query: 514 VLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           VLLSNIYA +G W++   +RK MR   +KKE G S IEIDG I EF+SG+     SE++
Sbjct: 574 VLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKV 632


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/610 (35%), Positives = 351/610 (57%), Gaps = 42/610 (6%)

Query: 9   FSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERL 68
             L NP +SLL+  K+ + + QI +Q+    LI + F  S+L+         ++D    +
Sbjct: 3   LQLINPFLSLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNI 62

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVN-MKRKGLLVDNYTYPFVLKACGVLMG 127
                 PNT+  N  IRG+  S NP++A+  Y   ++  G   DNYTYP + KAC  L  
Sbjct: 63  LFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSL 122

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
           +  G+EI G V+ +GF  D+FV N +I +   CG +  AR +F+ S ++DLVSWN ++ G
Sbjct: 123 IRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMING 182

Query: 188 FVECGEMGKAREVFDEMP----------------------------------QKDAISWS 213
           +V  G   +A   + EM                                   +++ +  +
Sbjct: 183 YVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLT 242

Query: 214 I-----MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
           +     ++D Y K  G++ SAR LF+ M  K ++SW +M+ GYA+ G L  A +LF+EMP
Sbjct: 243 VPLANALMDMYMKC-GNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMP 301

Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328
           +++V  W+ MI GY      KEAL LF EM    + PD ++++  +SAC+Q+GALD+G W
Sbjct: 302 DKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIW 361

Query: 329 IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
           IH ++++  +++++ + TALIDMY KCG + +A ++F  +  +N +++  +I+GL ++G 
Sbjct: 362 IHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGN 421

Query: 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
              A+  F++M    +  D++ FLG+L AC H GL  EG + F  M     + PKL+HYS
Sbjct: 422 AHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYS 481

Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508
           C+VDLL RAG LE+A  +++SMP++ +  +WG L  ACR H NV + E     L+++   
Sbjct: 482 CMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPH 541

Query: 509 DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQ 568
           D G+YVLL+N+Y +A MW+ A + RK+MR+R ++K  G S IE++G + EF+  +    Q
Sbjct: 542 DSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQ 601

Query: 569 SEEL-ELVIQ 577
           SE++ E +IQ
Sbjct: 602 SEQIYECLIQ 611


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/609 (35%), Positives = 357/609 (58%), Gaps = 42/609 (6%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
           +SLL+  K+   + QI +      L ++P    +++    +  +  M  A ++F+ I QP
Sbjct: 11  ISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQP 70

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
             ++ NTMI+GY++ ++PQ  +S Y+ M    +  D +T+PF+LK     M L  G  + 
Sbjct: 71  TLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLL 130

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
              VK GF  ++FV    I M+S C  +  AR VF+  +  ++V+WN++L G+    +  
Sbjct: 131 NHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFK 190

Query: 196 KAREVFDEMPQK----DAISWSIMIDGYRKKK---------------------------- 223
           K++ +F EM ++    ++++  +M+    K K                            
Sbjct: 191 KSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLI 250

Query: 224 ------GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSI 277
                 G++  A+ +F++M  +D+ISW S++ G+A IG +  A++ F+++PER+  SW+ 
Sbjct: 251 DMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTA 310

Query: 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337
           MIDGY +     EAL LFREM    V+PD  +++  ++ACA +GAL+LG+W+  ++ ++ 
Sbjct: 311 MIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNS 370

Query: 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFA 397
           I  D  V  ALIDMY KCG++ +A+++F  M  K+  ++  MI GL +NG GEEAL  F+
Sbjct: 371 IKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFS 430

Query: 398 QMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA 457
            M    I  D++ ++GVL AC+H+G+  +G   F SM    GI+P + HY C+VDLL RA
Sbjct: 431 NMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRA 490

Query: 458 GELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517
           G LE+A  ++ +MP+KPN  +WG+LL ACR H+NV LAE+  + ++EL+ ++  +YVLL 
Sbjct: 491 GRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLC 550

Query: 518 NIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEE----LE 573
           NIYA    WE+  ++RK+M +R IKK  G S++E++GN+ EFV+G+    QS+E    LE
Sbjct: 551 NIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLE 610

Query: 574 LVIQSFVKT 582
            ++Q  +K 
Sbjct: 611 NMMQDLIKA 619


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/577 (37%), Positives = 341/577 (59%), Gaps = 7/577 (1%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           +NP   +L+  KT   + +I A L    L+ +P     LL S       +MD A  +F Q
Sbjct: 24  ENPKTLILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQ 83

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           I +P++  +N MIRG+T   +P +A+  +  M    +  D +T+P +LK C  L  L EG
Sbjct: 84  IDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEG 143

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            +IH  ++K GF    FV N LI MY+ CG +  AR VF+    +++ +WN +  G+ + 
Sbjct: 144 EQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKS 203

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKG---DISSARILFEHMPIKDLIS----W 244
           G   +  ++F EM + D     + +       G   D+     +  ++  K L       
Sbjct: 204 GNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLI 263

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
            S++D YAK G +  A++LF++M  R+V +WS MI GY+Q    +EAL LF EM    + 
Sbjct: 264 TSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANID 323

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           P+ I+++  +S+CA +GAL+ GKW+H F+K+ R+ + + + TAL+D Y KCGS++ +  +
Sbjct: 324 PNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEV 383

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F  M  KNV+S+ V+I GL  NG G++AL+ F  M  + +  +D+ F+GVL ACSH+GL 
Sbjct: 384 FGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLV 443

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            EG  +F SM R  GIEP++EHY C+VD+L RAG +E+A   +++MP++PN  +W TLL 
Sbjct: 444 DEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLA 503

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           +C+ H+NV + E  ++ L+ L+    G Y+LLSNIYA  G WE AL++R  M+++ IKK 
Sbjct: 504 SCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKT 563

Query: 545 TGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
            G S+IE+DG I EF + +    QSEE+   I+  +K
Sbjct: 564 PGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMK 600


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/598 (35%), Positives = 353/598 (59%), Gaps = 45/598 (7%)

Query: 2   KTLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLN 61
           +   ++  + K+  VS   IS  T+  L   A L    L T+PF +S ++ S +  +T N
Sbjct: 9   RLFTSSSMAPKSGRVSKNSISTDTSKELH--AHLIRTQLHTDPFLMSDVIRSYSLSST-N 65

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           + +A  +FNQI  P   + N MIRG +QS +P +A+  Y  M  +G+  +N T  F+ KA
Sbjct: 66  LHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKA 125

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  +  +V G +IH   +K+GF   +FV N LI MY+ CG +G A+ +F+G   +DLVSW
Sbjct: 126 CARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSW 185

Query: 182 NLVLRGFVECGEMGKAREVFDEMP----QKDAIS-------------W------------ 212
           N ++ G+ +  +  +   +FD M     + DA++             W            
Sbjct: 186 NTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKE 245

Query: 213 ----------SIMIDGY-RKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQ 261
                     + +ID Y R+   ++  A+ +F+ M  ++++SWN+++ G+AK+G+L AA+
Sbjct: 246 NNLEIDVYLGNTLIDMYGRRSLAEL--AQGVFDRMRERNIVSWNALVMGHAKVGNLTAAR 303

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
           +LF+ MP+R+V SW+ MI GY+Q     +A+ LF+EM+   V+PD ++V   +SACA +G
Sbjct: 304 KLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLG 363

Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
            LD+G  +H +++R  +  D+ V  +LIDMY KCG +++A  +F+ M  K+ +S+  +I+
Sbjct: 364 KLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVIS 423

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
           GL +NGF   AL  F+QM  EG+      F+G+L+AC+H+GL  +G   F+SM+   G+ 
Sbjct: 424 GLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLV 483

Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEG 501
           P ++HY C+VDLLSR+G +++A   ++ MP+ P++ +W  LL AC+ H NV LAE+  + 
Sbjct: 484 PAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKR 543

Query: 502 LVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEF 559
           L+EL   D G YVLLSN YA    W+ A+++R++M    ++K +G S IE+DG +  +
Sbjct: 544 LLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVDGMVSNY 601


>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
          Length = 612

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/588 (37%), Positives = 335/588 (56%), Gaps = 41/588 (6%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           +P + LL   K +  + +I A+L TN  I  P   +++++         + +  R     
Sbjct: 15  SPTIKLLGSCKNSEDVNKIHARLITNGFIKNPNLTTRIVLDFADSRRSYLAEFARFVFHE 74

Query: 73  YQ-------PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVL 125
           Y         + ++ N +I+ ++   +P+KAL  +  M   G+ VD ++   VLKAC  L
Sbjct: 75  YHVCSNGDFEDPFLWNAVIKSHSHGLDPRKALLLFCLMLETGVSVDKFSLSLVLKACSRL 134

Query: 126 MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL 185
             + EG +IHG + K G   D+++ N LIG+Y KCG +G AR VF+    +D VS+N ++
Sbjct: 135 GFVKEGMQIHGFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSVSYNSMI 194

Query: 186 RGFVECGEMGKAREVFDEMPQ--KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243
            G+V+CG +  AR +FD MP+  K+ ISW+ MI GY ++   ++ A+ LF+ MP KDLIS
Sbjct: 195 DGYVKCGMIESARGLFDLMPKEKKNLISWNFMISGYAQRADGVNVAKKLFDEMPEKDLIS 254

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
           WNS+IDGY K G +  A+ LFN+MP+R+V +W+ M+DGYA+ G   +A  LF  M  + V
Sbjct: 255 WNSLIDGYVKHGRMEDAKSLFNKMPKRDVVTWATMVDGYAKLGFVHQAKSLFDRMPLRDV 314

Query: 304 --------------------------------RPDVISVMGAISACAQVGALDLGKWIHV 331
                                            PD  +++  +SA AQ+G L     IH+
Sbjct: 315 VAYNSMITGYVQNRYHKEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHL 374

Query: 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391
           ++  ++  +   +  ALID Y KCGS+ ++ R+F  +  K++  +N MI GL ++G GE 
Sbjct: 375 YIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGES 434

Query: 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
           A     Q+E   I  DD+ F+GVL ACSHSGL  EG   F+ M+R   IEPKL+HY C+V
Sbjct: 435 AFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMV 494

Query: 452 DLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511
           D+LSR+G +E A N++E MP++PN  +W T L AC NH+     E+V + L      +  
Sbjct: 495 DILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSNHKEFETGELVAKHLFLQGGYNPS 554

Query: 512 LYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEF 559
            +VLLSN+YA  GMW+   R+R  M++RK++K  G S IE+DGN+ EF
Sbjct: 555 SFVLLSNMYASFGMWKEVRRVRTTMKERKLRKIPGCSWIELDGNVHEF 602


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/604 (36%), Positives = 349/604 (57%), Gaps = 49/604 (8%)

Query: 10  SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLF 69
           SL    VSL Q+ +T  H+++           ++P++ S+L       +  +++ A ++F
Sbjct: 35  SLIERCVSLRQLKQTHGHMIR-------TGTFSDPYSASKLFAMAALSSFASLEYARKVF 87

Query: 70  NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDN-YTYPFVLKACGVLMGL 128
           ++I +PN++  NT+IR Y    +P  ++  +++M  +     N YT+PF++KA   +  L
Sbjct: 88  DEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSL 147

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
             G  +HG  VK     DVFV N LI  Y  CG +  A  VF   + KD+VSWN ++ GF
Sbjct: 148 SLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGF 207

Query: 189 VECGEMGKAREVFDEMPQKDAISWSI---------------------------------- 214
           V+ G   KA E+F +M  +D  +  +                                  
Sbjct: 208 VQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNL 267

Query: 215 -----MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269
                M+D Y  K G I  A+ LF+ M  KD ++W +M+DGYA   D  AA+++ N MP+
Sbjct: 268 TLANAMLDMY-TKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQ 326

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREM-LCQGVRPDVISVMGAISACAQVGALDLGKW 328
           +++ +W+ +I  Y Q+G P EAL +F E+ L + ++ + I+++  +SACAQVGAL+LG+W
Sbjct: 327 KDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRW 386

Query: 329 IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
           IH ++K+  I M+  V +ALI MY KCG L+++R +F S+ K++V  ++ MI GL M+G 
Sbjct: 387 IHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGC 446

Query: 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
           G EA+  F +M+   +  + + F  V  ACSH+GL  E   +F  M+ + GI P+ +HY+
Sbjct: 447 GNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYA 506

Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508
           C+VD+L R+G LE+A+  +E+MP+ P+ ++WG LL AC+ H N+ LAE+    L+EL+  
Sbjct: 507 CIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPR 566

Query: 509 DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQ 568
           + G +VLLSNIYA  G WE+   +RK MR   +KKE G S IEIDG I EF+SG+     
Sbjct: 567 NDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPM 626

Query: 569 SEEL 572
           SE++
Sbjct: 627 SEKV 630


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/560 (38%), Positives = 340/560 (60%), Gaps = 34/560 (6%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLN-MDQAERLFNQIY 73
           ++SLLQ +     I+QI A +    L    F L++LL  L + ++ N +  A  +F++I 
Sbjct: 6   VMSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIP 65

Query: 74  QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL-VDNYTYPFVLKACGVLMGLVEGT 132
            P+T++ NTMIR Y  S NPQ+++S +  M+ +  + +D+Y+   V++ACG L     G 
Sbjct: 66  SPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQ 125

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           ++H +V+K+G   D+FV   LI MY+K G +          EI                 
Sbjct: 126 KLHTQVLKIGLGSDLFVETALIEMYAKFGDI----------EI----------------- 158

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA 252
               AR + DEM   D + +++++  Y  + G+I+ A  LF+ MP +DL+SWN+MI G+A
Sbjct: 159 ----ARNILDEMAHPDLVPYNVLLAEY-VRVGEINLAHDLFDRMPERDLVSWNTMIHGHA 213

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
            +GD+  A++LF+   ER++ SWS MI  YA+     EAL LF EM    V PD ++++ 
Sbjct: 214 SLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVS 273

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
            +SAC  VGAL +GK IH  ++R+RI +D+ + T+L+DMY KCG +D + R+F  M  ++
Sbjct: 274 VLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRD 333

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
           V +++ MI GL  +GFGE AL  F++M +E I  +D+ F+GVL ACSH GL  EG+  F 
Sbjct: 334 VFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFT 393

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV 492
           SM +   + PK+EHY C+VD+L RAG L++A+ +++SMP  P+  +W  LL ACR ++NV
Sbjct: 394 SMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNV 453

Query: 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
            +AE     L+EL+    G YVLLSNIY+ A  W+  + +R+MM+   I+K  G S IE+
Sbjct: 454 EIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEV 513

Query: 553 DGNIKEFVSGEIFDVQSEEL 572
           D  + EFV+G+    +S+++
Sbjct: 514 DNAVHEFVAGDQSHPESKKI 533


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/565 (40%), Positives = 341/565 (60%), Gaps = 21/565 (3%)

Query: 15  LVSLLQISKTTTHILQILAQL-TTNDLITEPFTLSQLLMSLTSPNTLNMDQ--AERLFNQ 71
            +S LQ  K+   + QI A +  T        T+S  L +L +  +L +D   A  L  Q
Sbjct: 25  FLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCA-QSLPIDPRYALSLLAQ 83

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQ-KALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
           +  PN  ++N +IRG   S+N   + L  Y  M  KG++ DNYT PFVLKAC     + E
Sbjct: 84  LRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVRE 143

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G E+HG+ +KMG   DV+V N L+ MY+ C  +  AR VF+ S  +DLVSW  +++G+V+
Sbjct: 144 GEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVK 203

Query: 191 CGEMGKARE---VFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK---- 239
              MG ARE   +F EM     Q D ++  I++     + GD+   R L  ++       
Sbjct: 204 ---MGFAREGVGLFFEMCGENLQADGMTLVIVLSSC-ARLGDLRLGRKLHRYIIRNSNVN 259

Query: 240 -DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
            D+   N+++D Y K GD   A+++F EMP +NV SW+ MI G AQ G  KE+LY+FR+M
Sbjct: 260 LDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKM 319

Query: 299 LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
              GV+PD ++++  +++CA +G L+LGKW+H ++ R++I  D  +  AL+DMY KCGS+
Sbjct: 320 QRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSI 379

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
           D+A  +F +M +K+V SY  MI GL M+G G +AL  F++M   GI  D++ F+GVL AC
Sbjct: 380 DQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTAC 439

Query: 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
           SH GL  EG + F+ M     + P+LEHY C+VDLL RAG + +A   + +MP++P+  +
Sbjct: 440 SHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFV 499

Query: 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
            G LL AC+ H  V L E V++ + +++    G YVL+SNIY+ A  W  AL++RK M++
Sbjct: 500 LGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKE 559

Query: 539 RKIKKETGRSVIEIDGNIKEFVSGE 563
           R ++K  G S IE+DG I EF  G+
Sbjct: 560 RNLEKTPGCSSIELDGVIHEFQKGD 584


>gi|297824523|ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 555

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/529 (38%), Positives = 337/529 (63%), Gaps = 7/529 (1%)

Query: 56  SPNTLNMDQAERLFNQ-IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV-DNY 113
           S + + +  A +LF+Q  ++ ++++ N+MI+ Y ++ +   + +FY +++++  L  DN+
Sbjct: 20  SASAVGIGYARKLFDQRPHREDSFLCNSMIKAYLETRHYNDSFAFYRDLRKETCLAPDNF 79

Query: 114 TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS 173
           T+  + K+C + M + +G ++H ++ + GF  D++V  G++ MY+K G MGCAR+VF+  
Sbjct: 80  TFTTMTKSCTLSMCVYQGLQLHSQIWRSGFCADMYVSTGVVDMYAKFGKMGCARNVFDEM 139

Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ-KDAISWSIMIDGYRKKKGDISSARIL 232
             +  VSW  ++ G+V  GE+  A ++FD+MPQ KD + ++ M+DG+  K GD++SAR L
Sbjct: 140 PQRSEVSWTALICGYVRFGELDLASKLFDQMPQVKDVVIYNAMMDGF-VKSGDMTSARRL 198

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
           F+ M  K +I+W +MI GY    D+ +A++LF+ MPERN+ SW+ MI GY Q+  P+EA+
Sbjct: 199 FDEMTHKTVITWTTMIHGYCNSNDIDSARKLFDAMPERNLVSWNTMIGGYCQNKQPQEAI 258

Query: 293 YLFREM-LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
            LF+EM     + PD ++++  + A +  GAL LG+W H F++R  +   + V TA++DM
Sbjct: 259 RLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKNLDKKVKVCTAILDM 318

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y KCG +++A+RIF  M +K V S+N MI G  +NG    AL  F  M  E  P D++  
Sbjct: 319 YSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNAHAALDLFLTMAKEEKP-DEITM 377

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           L V+ AC+H GL  EG + FQ M++  G+  K+EHY C+VDLL RAG L+QA +++ +MP
Sbjct: 378 LAVISACNHGGLVEEGRKWFQMMRKF-GLNAKIEHYGCMVDLLGRAGNLKQAEHLITNMP 436

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
            KPN  +  + L AC  ++++  AE +++  VEL+  + G YVLL N+YA    W+    
Sbjct: 437 FKPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGM 496

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFV 580
           ++ MMRK + KKE G S+IEI+  + EF+SG+      + + LV++  +
Sbjct: 497 VKNMMRKNEAKKEVGCSLIEINYIVSEFISGDTTHPHRQSIHLVLEKLL 545


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/602 (38%), Positives = 345/602 (57%), Gaps = 43/602 (7%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERLFNQ 71
           +P +SLL   KT   +  I AQ+    L    + LS+LL   + SPN   +  A  +F  
Sbjct: 3   HPSLSLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFET 62

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           I +PN  + NTM RG+  SS+P  A+  YV M   GLL ++YT+PF+LK+C  L    EG
Sbjct: 63  IQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEG 122

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            +IHG V+K+G+  D++V   LI MY K G    A  VF+GS  +D+VS+  ++ G+   
Sbjct: 123 QQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASR 182

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM------PIKDLI--- 242
           G +  A+++FDE+P KD +SW+ +I GY    G+   A  LF+ M      P +  +   
Sbjct: 183 GYIESAQKMFDEIPVKDVVSWNAIISGY-ADTGNNKEALDLFKEMMKTNVKPDESTMVTV 241

Query: 243 -----------------SW-------------NSMIDGYAKIGDLVAAQQLFNEMPERNV 272
                            SW             N++ID Y+K G++  A  LF  +  ++V
Sbjct: 242 VSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDV 301

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
            SW+ MI GY      KEAL LF+EML  G  P+ ++++  + ACAQ+GA+D G+WIHV+
Sbjct: 302 ISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVY 361

Query: 333 M-KRSR-ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
           + KR + +T    ++T+LIDMY KCG ++ A ++F SM  + + + N MI G  M+G   
Sbjct: 362 IDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRAN 421

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
            A   F++M   GI  DD+ F+G+L ACSHSG+   G RIF+SM ++  I PKLEHY C+
Sbjct: 422 AAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCM 481

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           +DLL   G  ++A  ++ +M M+P+  +W +LL AC+ H NV L E   + L++++ ++ 
Sbjct: 482 IDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENP 541

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570
           G YVLLSNIYA AG W     IR ++  + +KK  G S IEID  + EF+ G+ F  ++ 
Sbjct: 542 GSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNR 601

Query: 571 EL 572
           E+
Sbjct: 602 EI 603


>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 566

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/559 (38%), Positives = 338/559 (60%), Gaps = 43/559 (7%)

Query: 35  LTTNDLITEPFTLSQLLMSLT-SPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNP 93
           +   +L T+P T+  L+ S   SP+T+   +A  LF QI++P     N MIRG++ S  P
Sbjct: 1   MVNPNLRTDPSTIYNLIKSYALSPSTIL--KAHNLFQQIHRPTLPFWNIMIRGWSVSDQP 58

Query: 94  QKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGL 153
            +A+  Y  M R+GLL +N TY F+ KAC  +  +  G+ IH  V+K+GF   ++V N L
Sbjct: 59  NEAIRMYNLMYRQGLLGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNAL 118

Query: 154 IGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDA 209
           I MY  CGH+G A+ VF+    +DLVSWN ++ G+ +C    +   VF+ M     + DA
Sbjct: 119 INMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDA 178

Query: 210 IS-------------WSI----------------------MIDGYRKKKGDISSARILFE 234
           ++             W +                      +ID Y  ++G +  AR +F+
Sbjct: 179 VTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMY-GRRGLVHLARGVFD 237

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
            M  ++L+SWN+MI GY K G+LVAA++LF+ M +R+V SW+ MI  Y+Q G   EAL L
Sbjct: 238 QMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRL 297

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           F+EM+   V+PD I+V   +SACA  G+LD+G+  H ++++  +  D+ V  ALIDMY K
Sbjct: 298 FKEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCK 357

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG +++A  +F  M KK+ +S+  +I+GL +NGF + AL  F++M  E +      F+G+
Sbjct: 358 CGVVEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGI 417

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L+AC+H+GL  +G   F+SM++  G++P+++HY C+VDLLSR+G L++A   ++ MP+ P
Sbjct: 418 LLACAHAGLVDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTP 477

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           ++ +W  LL A + H N+ LAE+  + L+EL   + G YVL SN YA +  WE A+++R+
Sbjct: 478 DVVIWRILLSASQVHGNIPLAEIATKKLLELDPSNSGNYVLSSNTYAGSNRWEDAVKMRE 537

Query: 535 MMRKRKIKKETGRSVIEID 553
           +M K  ++K +G S IE++
Sbjct: 538 LMEKSNVQKPSGSSCIEME 556


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/593 (36%), Positives = 342/593 (57%), Gaps = 41/593 (6%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           K   +  L+  K+   + QI +Q+    L  +  T+++L+      +  N+  AE++FN 
Sbjct: 143 KKSCIECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNY 202

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           +  P+ +++N M++ Y +    +K L  +  ++  GL  D +TYPFVLKA G L  + +G
Sbjct: 203 VQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQG 262

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            ++ G +VK G   D +V N LI MY +  ++  A+ +F+    +D VSWN+++ G+V C
Sbjct: 263 EKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRC 322

Query: 192 GEMGKAREVFDEMPQ----------------------------------KDAISWSIMID 217
                A   F EM Q                                  +  + ++  ID
Sbjct: 323 RRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRID 382

Query: 218 G----YRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
                   K G ++ AR +F+ M +K++I W SMI GY   GDL  A+ LF++ P R+V 
Sbjct: 383 NALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVV 442

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
            W+ MI+GY Q  +  +A+ LFREM  Q V+PD  +V+  ++ CAQ+GAL+ GKWIH ++
Sbjct: 443 LWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYL 502

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
             +RITMD++V TALI+MY KCG +D++  IFY +  K+  S+  +I GL MNG   EAL
Sbjct: 503 DENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEAL 562

Query: 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
           + F++ME  G   DD+ F+GVL ACSH GL  EG R F SMK+   IEPK+EHY C++DL
Sbjct: 563 RLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDL 622

Query: 454 LSRAGELEQALNIVESMPMKPN---LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           L RAG L++A  +++ +P++     + L+G LL ACR H NV + E + + L  +++ D 
Sbjct: 623 LGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDS 682

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
            ++ LL+NIYA    WE A ++R+ M++  +KK  G S+IE+DG + EF+ G+
Sbjct: 683 SIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVGD 735


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/593 (36%), Positives = 342/593 (57%), Gaps = 41/593 (6%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           K   +  L+  K+   + QI +Q+    L  +  T+++L+      +  N+  AE++FN 
Sbjct: 97  KKSCIECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNY 156

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           +  P+ +++N M++ Y +    +K L  +  ++  GL  D +TYPFVLKA G L  + +G
Sbjct: 157 VQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQG 216

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            ++ G +VK G   D +V N LI MY +  ++  A+ +F+    +D VSWN+++ G+V C
Sbjct: 217 EKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRC 276

Query: 192 GEMGKAREVFDEMPQ----------------------------------KDAISWSIMID 217
                A   F EM Q                                  +  + ++  ID
Sbjct: 277 RRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRID 336

Query: 218 G----YRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
                   K G ++ AR +F+ M +K++I W SMI GY   GDL  A+ LF++ P R+V 
Sbjct: 337 NALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVV 396

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
            W+ MI+GY Q  +  +A+ LFREM  Q ++PD  +V+  ++ CAQ+GAL+ GKWIH ++
Sbjct: 397 LWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYL 456

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
             +RITMD++V TALI+MY KCG +D++  IFY +  K+  S+  +I GL MNG   EAL
Sbjct: 457 DENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEAL 516

Query: 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
           + F++ME  G   DD+ F+GVL ACSH GL  EG R F SMK+   IEPK+EHY C++DL
Sbjct: 517 RLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDL 576

Query: 454 LSRAGELEQALNIVESMPMKPN---LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           L RAG L++A  +++ +P++     + L+G LL ACR H NV + E + + L  +++ D 
Sbjct: 577 LGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDS 636

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
            ++ LL+NIYA    WE A ++R+ M++  +KK  G S+IE+DG + EF+ G+
Sbjct: 637 SIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFLVGD 689


>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
 gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
 gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
 gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
 gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
 gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
          Length = 681

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/605 (36%), Positives = 345/605 (57%), Gaps = 41/605 (6%)

Query: 9   FSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERL 68
           F L NPL+SLL+  K   H+ QI AQ+  N LI +PF  S+L+       +  +D + ++
Sbjct: 50  FVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKI 109

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL---VDNYTYPFVLKACGVL 125
              I  PN +  N  IRG+++S NP+++   Y  M R G      D++TYP + K C  L
Sbjct: 110 LKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADL 169

Query: 126 MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL 185
                G  I G V+K+       V N  I M++ CG M  AR VF+ S ++DLVSWN ++
Sbjct: 170 RLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLI 229

Query: 186 RGFVECGEMGKAREVFDEMPQK----DAI-------SWSIMIDGYRKKK----------- 223
            G+ + GE  KA  V+  M  +    D +       S S++ D  R K+           
Sbjct: 230 NGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLR 289

Query: 224 ----------------GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
                           GDI  AR +F+++  + ++SW +MI GYA+ G L  +++LF++M
Sbjct: 290 MTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDM 349

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK 327
            E++V  W+ MI G  Q    ++AL LF+EM     +PD I+++  +SAC+Q+GALD+G 
Sbjct: 350 EEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGI 409

Query: 328 WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
           WIH ++++  +++++ + T+L+DMY KCG++ EA  +F+ +  +N ++Y  +I GL ++G
Sbjct: 410 WIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHG 469

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
               A+  F +M   GI  D++ F+G+L AC H G+   G   F  MK    + P+L+HY
Sbjct: 470 DASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHY 529

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
           S +VDLL RAG LE+A  ++ESMPM+ + A+WG LL  CR H NV L E   + L+EL  
Sbjct: 530 SIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDP 589

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDV 567
            D G+YVLL  +Y +A MWE A R R+MM +R ++K  G S IE++G + EF+  +    
Sbjct: 590 SDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRP 649

Query: 568 QSEEL 572
           +SE++
Sbjct: 650 ESEKI 654


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/521 (39%), Positives = 326/521 (62%), Gaps = 7/521 (1%)

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           LF+QI QPN ++ NTMIRG   +     A+ FY  M+ +G L +N+T+PFVLKAC  L+ 
Sbjct: 68  LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLD 127

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
           L  G +IH  VVK GF CDVFV   L+ +Y+KCG++  A  VF+    K++VSW  ++ G
Sbjct: 128 LQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISG 187

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMID---GYRKKKGDISSA----RILFEHMPIKD 240
           ++  G+  +A ++F  + + +    S  I        + GD++S     + + E   +++
Sbjct: 188 YIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRN 247

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
           +    S++D YAK G++  A+ +F+ MPE+++ SW  MI GYA +G PKEA+ LF +M  
Sbjct: 248 VFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQR 307

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
           + V+PD  +V+G +SACA++GAL+LG+W+   + R+    + ++ TALID+Y KCGS+  
Sbjct: 308 ENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSR 367

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           A  +F  M +K+ + +N +I+GL MNG+ + +   F Q+E  GI  D   F+G+L  C+H
Sbjct: 368 AWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTH 427

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
           +GL  EG R F SM R   + P +EHY C+VDLL RAG L++A  ++ +MPM+ N  +WG
Sbjct: 428 AGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWG 487

Query: 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540
            LL ACR H++  LAE+ ++ L+EL+  + G YVLLSNIY+    W+ A ++R  M +++
Sbjct: 488 ALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKR 547

Query: 541 IKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
           I+K  G S IE+DG + EF+ G+ +   SE++   +    K
Sbjct: 548 IQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTK 588


>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g44880-like [Glycine max]
          Length = 599

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/569 (37%), Positives = 332/569 (58%), Gaps = 12/569 (2%)

Query: 17  SLLQISKTTTHILQILAQLTTNDLITEPF--TLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           +LLQI     H   +   L +N  +   F  T + L  S   P  + ++ A R FN  + 
Sbjct: 32  TLLQI-----HAFILRHSLHSNLNLLTAFVTTCASLAASAKRPLAI-INHARRFFNATHT 85

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKG--LLVDNYTYPFVLKACGVLMGLVEGT 132
            +T++ N+MI  +  +    +  + + +++R+      D YT+  ++K C   +   EGT
Sbjct: 86  RDTFLCNSMIAAHFAARQFSQPFTLFRDLRRQAPPFTPDGYTFTALVKGCATRVATGEGT 145

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
            +HG V+K G   D++V   L+ MY K G +G AR VF+   ++  VSW  V+ G+  CG
Sbjct: 146 LLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKVFDEMSVRSKVSWTAVIVGYARCG 205

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA 252
           +M +AR +FDEM  +D ++++ MIDGY  K G +  AR LF  M  ++++SW SM+ GY 
Sbjct: 206 DMSEARRLFDEMEDRDIVAFNAMIDGY-VKMGCVGLARELFNEMRERNVVSWTSMVSGYC 264

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
             GD+  A+ +F+ MPE+NVF+W+ MI GY Q+    +AL LFREM    V P+ ++V+ 
Sbjct: 265 GNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQTASVEPNEVTVVC 324

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
            + A A +GALDLG+WIH F  R ++     + TALIDMY KCG + +A+  F  MT++ 
Sbjct: 325 VLPAVADLGALDLGRWIHRFALRKKLDRSARIGTALIDMYAKCGEITKAKLAFEGMTERE 384

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
             S+N +I G  +NG  +EAL+ FA+M  EG   +++  +GVL AC+H GL  EG R F 
Sbjct: 385 TASWNALINGFAVNGCAKEALEVFARMIEEGFGPNEVTMIGVLSACNHCGLVEEGRRWFN 444

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV 492
           +M+R  GI P++EHY C+VDLL RAG L++A N++++MP   N  +  + L AC    +V
Sbjct: 445 AMERF-GIAPQVEHYGCMVDLLGRAGCLDEAENLIQTMPYDANGIILSSFLFACGYFNDV 503

Query: 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
             AE V++ +V++  D  G YV+L N+YA    W     +++MM+KR   KE   SVIEI
Sbjct: 504 LRAERVLKEVVKMDEDVAGNYVMLRNLYATRQRWTDVEDVKQMMKKRGTSKEVACSVIEI 563

Query: 553 DGNIKEFVSGEIFDVQSEELELVIQSFVK 581
            G+  EF +G+      E ++L +    K
Sbjct: 564 GGSFIEFAAGDYLHSHLEVIQLTLGQLSK 592


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/568 (36%), Positives = 347/568 (61%), Gaps = 12/568 (2%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           +P +  L+   T + + QI AQ+    L  +PF+ S+++      ++ ++  A  +FNQI
Sbjct: 41  HPCLLSLEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQI 100

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
             P T+  N++IRGYT  + P++A+ FY  M  +GL  D +T+P + K+CGV   L EG 
Sbjct: 101 PNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGV---LCEGK 157

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           ++H    K+GF  D ++ N L+ MYS CG +  AR VF+    K +VSW  ++  + +  
Sbjct: 158 QLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWD 217

Query: 193 EMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL----ISW 244
              +A ++F  M     + + I+   ++    + + D+ +A+ + +++    +    +  
Sbjct: 218 LPHEAIKLFRRMEIASVKPNEITLVNVLTACARSR-DLETAKQVHKYIDETGIGFHTVLT 276

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           ++++D Y K G    A+ LFN+MPE+N+F W+IMI+G+ +  + +EAL LF EM   GV+
Sbjct: 277 SALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVK 336

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
            D +++   + AC  +GAL+LGKW+HV++++ +I +D+ + TAL+DMY KCGS++ A R+
Sbjct: 337 GDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRV 396

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F  M +K+V+++  +I GL M G G +AL+ F +M+   +  D + F+GVL ACSH+GL 
Sbjct: 397 FQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLV 456

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            EG   F SM    GI+P +EHY C+VD+L RAG + +A +++++MPM P+  +   LL 
Sbjct: 457 NEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLS 516

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           ACR H N+ +AE   + L+EL   + G YVLLSNIY+    WE A ++R++M +R IKK 
Sbjct: 517 ACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKP 576

Query: 545 TGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            G S IE+ G + EFV G++   QS E+
Sbjct: 577 PGCSAIEVGGVVHEFVKGDVSHPQSSEI 604


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/626 (34%), Positives = 351/626 (56%), Gaps = 66/626 (10%)

Query: 14  PLVSLLQISKTTTHILQILAQL-TTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           P++ ++   KT   +  I A+L   + + +  F +++LL   +       D A ++F++I
Sbjct: 4   PILHIIHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGA--TDYAHKVFDEI 61

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
            QPN Y+  ++I GY ++    +A S ++ M+R+ + V N+T   VLKA   L     G 
Sbjct: 62  TQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQ 121

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF---- 188
            ++G V+K GF  D+ V N ++ ++ +C  +  AR  F+    KD+VSWN+++ G+    
Sbjct: 122 AVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNND 181

Query: 189 ---------------------------VECGEMGKAREVFDEMPQKDAISWSIMIDGYRK 221
                                      V+ G+M +A+ +FD MP KD  SW++M+ GY  
Sbjct: 182 RVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMD 241

Query: 222 ------------------------------KKGDISSARILFEHMPIKDLISWNSMIDGY 251
                                         K G++ SA+  F+ MP K++ISW  M+DGY
Sbjct: 242 IGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGIMLDGY 301

Query: 252 AKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
            K GD   A+ LF++MP +N+ +WS MI GYA++G P +AL LF     Q ++PD   ++
Sbjct: 302 IKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFIL 361

Query: 312 GAISACAQVGALDLGK-WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
           G ISAC+Q+G +D  +  IH ++  S ++ D+ V T+LIDMY KCGS+++A ++F     
Sbjct: 362 GIISACSQLGIIDAAESIIHNYVGPSLLS-DLRVFTSLIDMYAKCGSIEKALQMFEMAHP 420

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           K+++ Y+ MIA L  +G G +A+  F +M+   I  D + FLGVL AC+H GL  EG + 
Sbjct: 421 KDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKY 480

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
           F+ M    GI+P  +HY+C+VDLL R G LE+A N++ +MP+ P+  +WG LL ACR H 
Sbjct: 481 FKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVHC 540

Query: 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           NV LAEV    L +++ D+ G Y+LLSNIYA AG W    ++R  +R+ +++K  G S I
Sbjct: 541 NVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRGSSWI 600

Query: 551 EIDGNIKEFVSGEIFDVQSEELELVI 576
           E+   + EFV G++    S+ + L++
Sbjct: 601 ELSHVVHEFVMGDMSHTDSDSISLIL 626


>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 595

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/550 (37%), Positives = 339/550 (61%), Gaps = 6/550 (1%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           L + L+  K    + Q+L+QL  + L   P   +  +  L S +++   +A  LF+ ++ 
Sbjct: 10  LFAALESWKNLHELNQVLSQLIVSGLSQHPLFATSAIKKLCS-HSVTFPRATFLFDHLHH 68

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFY-VNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
           P+ +  NT+IR Y +  +   AL FY   M  + +  ++YT+P ++K C  +    EG +
Sbjct: 69  PDAFHCNTIIRAYARKPDFPAALRFYYCKMLARSVPPNHYTFPLLIKVCTDIGSFREGLK 128

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
            H  +VK GF  D+F  N LI MYS  G +G AR VF+ S   DLVS+N ++ G+V+ GE
Sbjct: 129 GHARIVKFGFGSDLFARNSLIRMYSVFGRIGNARMVFDESCWLDLVSYNSMIDGYVKNGE 188

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAK 253
           +G AR+VF+EMP +D +SW+ +I GY    GD+ +A  LFE +P +D +SWN MIDG A+
Sbjct: 189 IGAARKVFNEMPDRDVLSWNCLIAGY-VGVGDLDAANELFETIPERDAVSWNCMIDGCAR 247

Query: 254 IGDLVAAQQLFNEMPE--RNVFSWSIMIDGYAQHGNPKEALYLFREML-CQGVRPDVISV 310
           +G++  A + F+ MP   RNV SW+ ++  +A+  N  E L LF +M+  +   P+  ++
Sbjct: 248 VGNVSLAVKFFDRMPAAVRNVVSWNSVLALHARVKNYGECLMLFGKMVEGREAVPNEATL 307

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
           +  ++ACA +G L +G W+H F++ + I  D+++ T L+ MY KCG++D A+ +F  M  
Sbjct: 308 VSVLTACANLGKLSMGMWVHSFIRSNNIKPDVLLLTCLLTMYAKCGAMDLAKGVFDEMPV 367

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           ++V+S+N MI G G++G G++AL+ F +ME  G   +D  F+ VL AC+H+G+  EG+  
Sbjct: 368 RSVVSWNSMIMGYGLHGIGDKALELFLEMEKAGQQPNDATFISVLSACTHAGMVMEGWWY 427

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
           F  M+R   IEPK+EHY C+VDLL+RAG +E +  ++  +P+K   A+WG LL  C NH 
Sbjct: 428 FDLMQRVYKIEPKVEHYGCMVDLLARAGLVENSEELIRMVPVKAGSAIWGALLSGCSNHL 487

Query: 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           +  L E+V +  +EL+  D G Y+LLSN+YA  G W+    +R M++++ ++KE   S++
Sbjct: 488 DSELGEIVAKRFIELEPQDIGPYILLSNMYAAKGRWDDVEHVRLMIKEKGLQKEAASSLV 547

Query: 551 EIDGNIKEFV 560
            ++    ++V
Sbjct: 548 HLEDFESKYV 557


>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
          Length = 617

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/597 (37%), Positives = 337/597 (56%), Gaps = 45/597 (7%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLT-SPNTLNMDQAERLFNQ 71
           +P + LL   K +  + +I A+L TN  I  P   ++++++   S     ++ A  +F++
Sbjct: 15  SPTIKLLGSCKNSEDVNKIHARLVTNGFIKNPNLTTRIVLAFAASRRPYXVEFARFVFHE 74

Query: 72  I----YQP------NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
                + P      + Y+ N +I+ ++  ++P++AL  +  M   G+ VD ++   VLKA
Sbjct: 75  YXIRSFSPGGGDXEDXYLWNAVIKSHSHGTDPRRALLLFCLMLENGVSVDKFSLSLVLKA 134

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  + EG +IHG + K G   D+F+ N LIG+Y KCG +G AR +F+    +D VS+
Sbjct: 135 CSRLGLVKEGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSY 194

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQ--KDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239
           N ++ G+V+CG    ARE+FD MP+  K+ ISW+ MI GY +    +  A  LF  MP K
Sbjct: 195 NSMIDGYVKCGSTESARELFDLMPEEMKNLISWNSMISGYAQTSDGVDIASKLFSEMPDK 254

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           DLISWNSMIDGY K G +  A+ LF+ MP R+V +WS MIDGYA+ G   +A  LF +M 
Sbjct: 255 DLISWNSMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMP 314

Query: 300 CQGV--------------------------------RPDVISVMGAISACAQVGALDLGK 327
            + V                                 PD  +++  +SA AQ+G L    
Sbjct: 315 HRDVVSYNSMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAM 374

Query: 328 WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
            +H+++   +  +   +  ALIDMY KCGS+  A  +F  +  K++  +N MI GL ++G
Sbjct: 375 DMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFKGIENKSIDHWNAMIGGLAIHG 434

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
            GE A     Q+E   I  DD+ F+G+L ACSHSGL  EG   F+ M+R   IEP+L+HY
Sbjct: 435 LGESAFDMLLQIERRSIKPDDITFVGLLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY 494

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
            C+VD+LSR+G +E A N++E MP++PN  +W T L AC +H+     E+V + L+    
Sbjct: 495 GCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLAACNHHKEFETGELVAKHLIWEAG 554

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEI 564
            +   YVLLSN+YA  G W+   RIR +M++RKI+K  G S IE+DG + EF    I
Sbjct: 555 YNPSSYVLLSNLYASFGKWKDVRRIRTIMKERKIEKVPGCSWIELDGRVHEFFVDSI 611


>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
 gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/542 (39%), Positives = 319/542 (58%), Gaps = 6/542 (1%)

Query: 6   AAKFSLKNPLVSLLQISKTT-THILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLN-MD 63
           A    L +P++  L+ S T      QI  QLT   L   PF  S+ +  L +   LN + 
Sbjct: 51  APTLDLNHPILQKLEQSCTNIKQFNQIHTQLTVLGLFQHPFAASRYIKKLCA--CLNSVS 108

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYV-NMKRKGLLVDNYTYPFVLKAC 122
               L+N I +P+ +M NT++R +   ++P  AL FY   M  K +L ++YT+P V K C
Sbjct: 109 HCVSLYNHIEEPDAFMCNTIMRSFVNVNDPFGALRFYYEKMIAKWVLPNHYTFPLVAKVC 168

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
             +  L EG ++H  VVK GF  D+FV N  I  YS CG    AR VF+   + DLVSWN
Sbjct: 169 ADIGSLREGQKVHALVVKFGFELDLFVRNSFIRFYSVCGRTSDARMVFDNGFVLDLVSWN 228

Query: 183 LVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLI 242
            ++ G+V+ GE+G ARE+FDEM ++D  +W+ MI GY    GD+ +AR LF+ MP +D++
Sbjct: 229 SMIDGYVKNGELGLAREIFDEMYERDIFTWNSMISGY-VGVGDMEAARGLFDKMPSRDVV 287

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
           SWN MIDG+A+I D+  A + F+EMP RNV SW++M+  Y +     + L  F  M+   
Sbjct: 288 SWNCMIDGFARIKDVSMAAKFFDEMPLRNVVSWNVMLALYLRCKKYSDCLRFFDMMVGGD 347

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
             PD  S++  ++ACA++  LD GKW+H +MK + I  DM++ TAL+ MY KCG++D AR
Sbjct: 348 FVPDEASLVSVLTACAELKMLDQGKWVHSYMKDNGIKPDMLLSTALLTMYAKCGAMDLAR 407

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
            +F  M +K+V+S+N MI G G++G G++AL+ F +ME  G   +D  F+ VL ACSHSG
Sbjct: 408 EVFDKMPEKSVVSWNSMIIGYGIHGHGDKALEMFREMEKGGPMPNDATFMSVLSACSHSG 467

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
           +   G+  F  M R   I+PK EHY CLVDLL +AG  E + ++      +    LWG L
Sbjct: 468 MVWNGWWYFDLMHRKYRIQPKPEHYGCLVDLLGQAGLKEPSEDLTRKTHTEVEPTLWGDL 527

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
           L ACR H      E++ + L++L  +    Y+LLSN Y   G W+    +R  ++ + + 
Sbjct: 528 LSACRAHCISEPGEILAKQLIKLFPNHVVPYLLLSNTYVAEGRWDDVENLRMTLKNKTLN 587

Query: 543 KE 544
            +
Sbjct: 588 SK 589


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 232/628 (36%), Positives = 360/628 (57%), Gaps = 53/628 (8%)

Query: 10  SLKN-PLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAER 67
           SL+N P +SLL   KT   +  I AQ+    L    + LS+LL + + SP+   +  A  
Sbjct: 30  SLRNHPSLSLLHNCKTLQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAIS 89

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           +F  I +PN  + NTM RG+  SS+P  AL  YV M   GLL ++YT+PF+LK+C     
Sbjct: 90  VFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKA 149

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
             EG +IHG V+K+G+  D+FV   LI +Y + G +  AR VF+ S  +D+VS+  +++G
Sbjct: 150 FKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKG 209

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM------PIKDL 241
           +   G +  A+++FDE+P KD +SW+ MI GY  + G+   A  LF+ M      P +  
Sbjct: 210 YASRGYIESAQKLFDEIPVKDVVSWNAMISGY-AETGNYKEALELFKEMMKTNIRPDEST 268

Query: 242 I--------------------SW-------------NSMIDGYAKIGDLVAAQQLFNEMP 268
           +                    SW             NS++D Y+K G+L  A  LF  + 
Sbjct: 269 MVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLL 328

Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328
            ++V SW+ +I GY      KEAL LF+EML  G RP+ ++++  + ACA +GA+D+G+W
Sbjct: 329 YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRW 388

Query: 329 IHVFMKR--SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
           IHV++ +     T    ++T+LIDMY KCG ++ A ++F S+  K++ S+N MI G  M+
Sbjct: 389 IHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMH 448

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
           G  + A   F++M   GI  DD+ F+G+L ACS SG+   G  IF++M +   I PKLEH
Sbjct: 449 GRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEH 508

Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506
           Y C++DLL  +G  ++A  ++ +M M+P+  +W +LL AC+   NV L E   + L++++
Sbjct: 509 YGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIE 568

Query: 507 ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFD 566
            ++ G YVLLSNIYA AG W    +IR ++  + +KK  G S IEID  + EF+ G+ F 
Sbjct: 569 PENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFH 628

Query: 567 VQS-------EELELVIQS--FVKTTIE 585
            ++       EE+E++++   FV  T E
Sbjct: 629 PRNREIYGMLEEMEVLLEKAGFVPDTSE 656


>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
          Length = 615

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/590 (37%), Positives = 334/590 (56%), Gaps = 43/590 (7%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           +P + LL   KT+  + +I A+  T   I      ++++++  +     + +  R     
Sbjct: 15  SPTIQLLGTCKTSEDVSKIHARKGTTGFIKNTNLTTRIVLAFAASRRSYLAEFARCVFHE 74

Query: 73  YQ---------PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           Y           + ++ N +I+ ++    P+KAL  +  M + G+ VD ++   VLKAC 
Sbjct: 75  YHVSSXXSGNVEDPFLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACS 134

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            L  + EG + HG + K G   D+F+ N LIG+Y KCG +G AR VF+    +D VS+N 
Sbjct: 135 RLGFVKEGMQXHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNS 194

Query: 184 VLRGFVECGEMGKAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
           ++ G+V+CG +  ARE+FD MP  +K+ ISW+ MI+GY ++   +  A  LF+ MP KDL
Sbjct: 195 MIDGYVKCGLIESARELFDLMPSEKKNLISWNSMINGYAQRADGVDIASNLFDEMPEKDL 254

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
           ISWNS+IDGY K G +  A+ LF++MP R+V +W+ M+DGYA+ G   +A  LF +M  +
Sbjct: 255 ISWNSLIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQR 314

Query: 302 GV--------------------------------RPDVISVMGAISACAQVGALDLGKWI 329
            V                                 PD  +++  +SA AQ+G L     +
Sbjct: 315 DVVAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDM 374

Query: 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFG 389
           H++    +  +   +  ALIDMY KCGS+ +A  +F  +  K++  +N MI GL ++G G
Sbjct: 375 HLYTVEKKFLLGGKLGVALIDMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLAIHGLG 434

Query: 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449
           E A     Q+E   I  DD+ F+GVL ACSHSGL  EG   F+ MKR   IEP+L+HY C
Sbjct: 435 ESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMKRKHKIEPRLQHYGC 494

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509
           +VD+LSR+G +E A N++E MP++PN  +W T L AC +H+     E+V + L+     +
Sbjct: 495 MVDILSRSGRIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYN 554

Query: 510 CGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEF 559
              YVLLSN+YA  GMW+   R+R MM++RKI+K  G S IE+DG++ EF
Sbjct: 555 PSSYVLLSNMYASLGMWKEVRRVRTMMKERKIQKIPGCSWIELDGSVHEF 604


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/594 (37%), Positives = 347/594 (58%), Gaps = 47/594 (7%)

Query: 25  TTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERLFNQIYQPNTYMHNTM 83
           ++ +  I AQ+    L    + LS+LL   + SP+      A  +F+ I +PN  + NTM
Sbjct: 1   SSSVRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTM 60

Query: 84  IRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGF 143
            RG+  SS+P  AL  Y+ M   GLL D+YT+PF+LK+C       EG +IHG V+K+GF
Sbjct: 61  FRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGF 120

Query: 144 LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDE 203
             D++V   LI MY++ G +  AR VF+ S  +D+VS+  ++ G+V  G +  A+++FDE
Sbjct: 121 DLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDE 180

Query: 204 MPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI------------------------- 238
           +P KD +SW+ MI GY  + G+   A  LF+ M +                         
Sbjct: 181 IPGKDVVSWNAMISGY-VETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIE 239

Query: 239 --KDLISW-------------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
             + + SW             N++ID Y+K G++  A +LF+ +  ++V SW+ +I GY 
Sbjct: 240 LGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYT 299

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR---ITM 340
                KEAL LF+EML  G  P+ ++++  + ACA +GA+D+G+WIHV++ +     +T 
Sbjct: 300 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTN 359

Query: 341 DMIVQTALIDMYMKCGSLDEARRIF-YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
              +QT+LIDMY KCG +D A+++F  SM+ +++ ++N MI+G  M+G    A   F++M
Sbjct: 360 VSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRM 419

Query: 400 ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
              GI  DD+ F+G+L ACSHSG+   G  IF+SM R   I PKLEHY C++DLL  +G 
Sbjct: 420 RMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGL 479

Query: 460 LEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519
            ++A  ++ +MPM+P+  +W +LL AC+ H N+ L E   + L++++  + G YVLLSNI
Sbjct: 480 FKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNI 539

Query: 520 YADAGMWEHALRIRKMMRKRKIKKET-GRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           YA AG W    +IR ++  + +KK+  G S IEID  + EF+ G+    Q+ E+
Sbjct: 540 YAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREI 593


>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 555

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/525 (37%), Positives = 328/525 (62%), Gaps = 7/525 (1%)

Query: 56  SPNTLNMDQAERLFNQIYQ-PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV-DNY 113
           S + + +  A +LF+Q  Q  ++++ N+MI+ Y ++     + + Y +++++     DN+
Sbjct: 20  SASAVGIGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNF 79

Query: 114 TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS 173
           T+  + K+C + M + +G ++H ++ + GF  D++V  G++ MY+K G MGCAR+ F+  
Sbjct: 80  TFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEM 139

Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ-KDAISWSIMIDGYRKKKGDISSARIL 232
             +  VSW  ++ G++ CGE+  A ++FD+MP  KD + ++ M+DG+  K GD++SAR L
Sbjct: 140 PHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGF-VKSGDMTSARRL 198

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
           F+ M  K +I+W +MI GY  I D+ AA++LF+ MPERN+ SW+ MI GY Q+  P+E +
Sbjct: 199 FDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGI 258

Query: 293 YLFREM-LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
            LF+EM     + PD ++++  + A +  GAL LG+W H F++R ++   + V TA++DM
Sbjct: 259 TLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDM 318

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y KCG +++A+RIF  M +K V S+N MI G  +NG    AL  F  M  E  P D++  
Sbjct: 319 YSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEEKP-DEITM 377

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           L V+ AC+H GL  EG + F  M R  G+  K+EHY C+VDLL RAG L++A +++ +MP
Sbjct: 378 LAVITACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMP 436

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
            +PN  +  + L AC  ++++  AE +++  VEL+  + G YVLL N+YA    W+    
Sbjct: 437 FEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGM 496

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
           ++ +MRK + KKE G S+IEI+  + EF+SG+        + LV+
Sbjct: 497 VKNVMRKNQAKKEVGCSLIEINYIVSEFISGDTTHPHRRSIHLVL 541


>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
 gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
 gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 555

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/525 (37%), Positives = 328/525 (62%), Gaps = 7/525 (1%)

Query: 56  SPNTLNMDQAERLFNQIYQ-PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV-DNY 113
           S + + +  A +LF+Q  Q  ++++ N+MI+ Y ++     + + Y +++++     DN+
Sbjct: 20  SASAVGIGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNF 79

Query: 114 TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS 173
           T+  + K+C + M + +G ++H ++ + GF  D++V  G++ MY+K G MGCAR+ F+  
Sbjct: 80  TFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEM 139

Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ-KDAISWSIMIDGYRKKKGDISSARIL 232
             +  VSW  ++ G++ CGE+  A ++FD+MP  KD + ++ M+DG+  K GD++SAR L
Sbjct: 140 PHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGF-VKSGDMTSARRL 198

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
           F+ M  K +I+W +MI GY  I D+ AA++LF+ MPERN+ SW+ MI GY Q+  P+E +
Sbjct: 199 FDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGI 258

Query: 293 YLFREM-LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
            LF+EM     + PD ++++  + A +  GAL LG+W H F++R ++   + V TA++DM
Sbjct: 259 RLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDM 318

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y KCG +++A+RIF  M +K V S+N MI G  +NG    AL  F  M  E  P D++  
Sbjct: 319 YSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEEKP-DEITM 377

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           L V+ AC+H GL  EG + F  M R  G+  K+EHY C+VDLL RAG L++A +++ +MP
Sbjct: 378 LAVITACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMP 436

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
            +PN  +  + L AC  ++++  AE +++  VEL+  + G YVLL N+YA    W+    
Sbjct: 437 FEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGM 496

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
           ++ +MRK + KKE G S+IEI+  + EF+SG+        + LV+
Sbjct: 497 VKNVMRKNQAKKEVGCSLIEINYIVSEFISGDTTHPHRRSIHLVL 541


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/561 (36%), Positives = 327/561 (58%), Gaps = 46/561 (8%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           +NP +SL +  K+  H+ QI ++     +I  P   +++L    S    +M  A +LF+ 
Sbjct: 14  ENPPLSLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDT 73

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           I +P+ +  N M +GY++ + P+  +S Y+ M  + +  D YTYPF+ K     + L  G
Sbjct: 74  IPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLG 133

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            E+H  VVK G   +VF  N LI MYS CG             + D+             
Sbjct: 134 RELHCHVVKYGLDSNVFAHNALINMYSLCG-------------LIDM------------- 167

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGY 251
                AR +FD   + D ++W+ MI GY + K               KD+ISW +++ G+
Sbjct: 168 -----ARGIFDMSCKSDVVTWNAMISGYNRIK---------------KDVISWTAIVTGF 207

Query: 252 AKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
              G + AA++ F++MPER+  SW+ MIDGY +    KEAL LFREM    ++PD  +++
Sbjct: 208 VNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMV 267

Query: 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
             ++ACAQ+GAL+LG+WI  ++ ++++  D  V  ALIDMY KCG+++ A  IF ++ ++
Sbjct: 268 SVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQR 327

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           +  ++  M+ GL +NG GEEAL  F+QM    +  D++ ++GVL AC+H+G+  EG + F
Sbjct: 328 DKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFF 387

Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN 491
            SM    GIEP + HY C+VDLL +AG L++A  I+++MPMKPN  +WG LL ACR H++
Sbjct: 388 ASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKD 447

Query: 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
             +AE  +E ++EL+ ++  +YVL  NIYA    W+    +R++M  R IKK  G S+IE
Sbjct: 448 AEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIE 507

Query: 552 IDGNIKEFVSGEIFDVQSEEL 572
           ++G + EFV+G+    Q++E+
Sbjct: 508 MNGIVHEFVAGDQSHPQTKEI 528


>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
            protein [Zea mays]
          Length = 1467

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/546 (38%), Positives = 326/546 (59%), Gaps = 41/546 (7%)

Query: 28   ILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGY 87
            + ++ A L  + L    + +S+++  L + +  ++  A ++F QI  P T++ NT++RG 
Sbjct: 857  VKKLHAHLVVSGLHNCQYAMSKVI-RLYALHQSDLVSAHKVFKQIESPTTFLWNTLLRGL 915

Query: 88   TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV 147
             QS  P+ A+ FY   + KG+  DN T+PFVLKAC       EG ++H  V+K+GFL D+
Sbjct: 916  AQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHNHVIKLGFLLDI 975

Query: 148  FVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP-- 205
            FV N LI +Y+ CG + CARSVF    +KD+VSWN ++ G+ +   + +   +F  M   
Sbjct: 976  FVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLMQAE 1035

Query: 206  --QKDAIS-------------WSI----------------------MIDGYRKKKGDISS 228
              Q D ++             WS+                      +ID Y  + G + S
Sbjct: 1036 EVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDVYLGNTLID-YYCRIGQLQS 1094

Query: 229  ARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNP 288
            A  +F  M  K+ ++ N+MI  YAK G+LV+A+++F+++P +++ SWS MI  Y+Q  + 
Sbjct: 1095 AEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHF 1154

Query: 289  KEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTAL 348
             ++L LFR+M    V+PD + +   +SACA +GALDLGKWIH +++R+ I  D I++ +L
Sbjct: 1155 SDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKADTIMENSL 1214

Query: 349  IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD 408
            IDM+ KCG + EA ++F  M +K+ +S+N +I GL  NGF +EAL  F  M TEG   ++
Sbjct: 1215 IDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEGPRPNE 1274

Query: 409  LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468
            + FLGVLIAC++  L  EG   F+ MK    +EP+++HY C+VD+LSRAG+LE+A++ + 
Sbjct: 1275 VTFLGVLIACANRQLVEEGLDHFERMKSVHNLEPQMKHYGCVVDILSRAGQLEKAVSFIS 1334

Query: 469  SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528
             MP+ P+  +W  LL ACR H NV +AE+  + L EL   +    +LLSNIYA A  W  
Sbjct: 1335 EMPLAPDPVVWRILLGACRTHGNVAVAEMATKKLSELDPGNSADSMLLSNIYASADRWSD 1394

Query: 529  ALRIRK 534
            A+ +R+
Sbjct: 1395 AMNVRR 1400



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 116/316 (36%), Positives = 197/316 (62%), Gaps = 1/316 (0%)

Query: 229 ARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNP 288
           AR +F+ MP+K+++SWN MI G+A  G++  A+ LF++MP RNV SW+ +IDGY +    
Sbjct: 533 ARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLY 592

Query: 289 KEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTAL 348
            EAL L R M+  G+ P  I+V+  I A + +G + +G+ ++ + ++  I  D  V  +L
Sbjct: 593 AEALTLLRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSL 652

Query: 349 IDMYMKCGSLDEARRIFYSM-TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407
           ID+Y K GS+  + ++F  M  ++N++S+  +I+G  M+G   EAL+ FA+M   GI  +
Sbjct: 653 IDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPN 712

Query: 408 DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467
            + FL V+ ACSH GL  +G   F+SM     I+P+++H+ C++D+L RAG L +A  I+
Sbjct: 713 RITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQII 772

Query: 468 ESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWE 527
           E +PM+ N+ +W  LL  C  +  V + E  ++ + +L+ +  G + +LSN+  + G + 
Sbjct: 773 EGLPMEVNVTVWRILLGCCSKYGEVAMGERAIKMISDLERESGGDFAVLSNVLTELGRFS 832

Query: 528 HALRIRKMMRKRKIKK 543
            A + RK++ +RKI K
Sbjct: 833 DAEQARKLLDQRKIVK 848



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 115/384 (29%), Positives = 190/384 (49%), Gaps = 53/384 (13%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A ++F+Q   P        ++ Y+    P +AL  + +  R+ L  D + + FVLKAC  
Sbjct: 437 ALKVFDQSPAP----WRAFLKAYSHGPFPLEALHLFKH-ARQHLADDTFVFTFVLKACAG 491

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMY--SKCGHMGCARSVFEGSEIKDLVSWN 182
           L     G ++H  VV+ GF    +V   LI +Y  S+C  +  AR VF+   +K++VSWN
Sbjct: 492 LGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRC--LVEARKVFDEMPVKNVVSWN 549

Query: 183 LVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK--------------KGDISS 228
           +++ GF   GE+  AR +FD+MP ++ +SW+ +IDGY +                G IS 
Sbjct: 550 VMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISP 609

Query: 229 ARI-LFEHMP-----------------------IKDLISWNSMIDGYAKIGDLVAAQQLF 264
           + I +   +P                       + D    NS+ID YAKIG +  + ++F
Sbjct: 610 SEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVF 669

Query: 265 NEM-PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL 323
           +EM   RN+ SW+ +I G+A HG   EAL LF EM   G++P+ I+ +  I+AC+  G +
Sbjct: 670 DEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLV 729

Query: 324 DLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK-NVISYNVMI- 380
           + G  +    +    I  ++     +IDM  + G L EA +I   +  + NV  + +++ 
Sbjct: 730 EQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLG 789

Query: 381 --AGLGMNGFGEEALKCFAQMETE 402
             +  G    GE A+K  + +E E
Sbjct: 790 CCSKYGEVAMGERAIKMISDLERE 813



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 102/464 (21%), Positives = 208/464 (44%), Gaps = 35/464 (7%)

Query: 62   MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
            ++ A  LF+Q+   N      +I GYT++    +AL+   +M   G+     T   V+ A
Sbjct: 561  VEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVIPA 620

Query: 122  CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF-EGSEIKDLVS 180
               L G++ G  ++G   K G + D  V N LI +Y+K G +  +  VF E  + ++LVS
Sbjct: 621  ISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVS 680

Query: 181  WNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMID----GYRKKKGDISSARIL 232
            W  ++ GF   G   +A E+F EM     + + I++  +I+    G   ++G      ++
Sbjct: 681  WTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAFFKSMV 740

Query: 233  FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN---P 288
            +E+    ++  +  +ID   + G L  A+Q+   +P E NV  W I++   +++G     
Sbjct: 741  YEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCCSKYGEVAMG 800

Query: 289  KEALYLFREMLCQ-----GVRPDVISVMGAISACAQV--------------GALDLGKWI 329
            + A+ +  ++  +      V  +V++ +G  S   Q                 ++  K +
Sbjct: 801  ERAIKMISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLDQRKIVKLQEAVMEAVKKL 860

Query: 330  HVFMKRSRITMDMIVQTALIDMY-MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
            H  +  S +       + +I +Y +    L  A ++F  +       +N ++ GL  +  
Sbjct: 861  HAHLVVSGLHNCQYAMSKVIRLYALHQSDLVSAHKVFKQIESPTTFLWNTLLRGLAQSDA 920

Query: 389  GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
             ++A+  + + + +G+  D+L F  VL AC+ +    EG ++   + +  G    +   +
Sbjct: 921  PKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHNHVIK-LGFLLDIFVSN 979

Query: 449  CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV 492
             L+ L +  G L  A ++   M +K ++  W +L+     H  +
Sbjct: 980  SLIYLYAACGALACARSVFNEMLVK-DVVSWNSLIGGYSQHNRL 1022



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 110/260 (42%), Gaps = 47/260 (18%)

Query: 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
           A ++F++ P      W   +  Y+    P EAL+LF+    Q +  D       + ACA 
Sbjct: 437 ALKVFDQSPA----PWRAFLKAYSHGPFPLEALHLFKHAR-QHLADDTFVFTFVLKACAG 491

Query: 320 VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVM 379
           +G    G  +H  + +        V TALI++Y+    L EAR++F  M  KNV+S+NVM
Sbjct: 492 LGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNVM 551

Query: 380 IAGLGMNGFGE---------------------------------EALKCFAQMETEGIPK 406
           I G    G+GE                                 EAL     M   GI  
Sbjct: 552 ITGFA--GWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISP 609

Query: 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHC---GIEPKLEHYSCLVDLLSRAGELEQA 463
            ++  L V+ A S+ G    G  + + +  +C   GI       + L+DL ++ G ++ +
Sbjct: 610 SEITVLAVIPAISNLG----GILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNS 665

Query: 464 LNIVESMPMKPNLALWGTLL 483
           L + + M  + NL  W +++
Sbjct: 666 LKVFDEMLDRRNLVSWTSII 685


>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 641

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/602 (36%), Positives = 342/602 (56%), Gaps = 55/602 (9%)

Query: 6   AAKFSLKNPLVSLLQISKTTTHILQIL-------------AQLTTNDLITEPFTLSQLLM 52
           A +  L+ P+  L   S TT    QI+             A L        P ++S ++ 
Sbjct: 38  ALQMKLRRPISRLFTSSSTTRKCQQIIKSGFSIKSIKEQHAHLIRTHHHKNPKSMSNVIK 97

Query: 53  SLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVN-MKRKGLLVD 111
           S     + ++++A   F QI QP   + N +IRG +QS NP +A+  Y + M  +G+L D
Sbjct: 98  SYALSRS-HLNKANFAFIQIGQPTLLIFNYLIRGLSQSENPNEAIVMYSDLMYNQGILGD 156

Query: 112 NYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE 171
           N T+ ++ KAC  +  ++ G   H +V+K+GF   +F+ N LI MY   G +G A+ VF+
Sbjct: 157 NLTFIYLFKACSRVKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGYFGELGYAQKVFD 216

Query: 172 GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSI----------------- 214
             + +DLVSWN ++ G+ +C    +  ++F+ M + +  + S+                 
Sbjct: 217 KMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILACSYLCEDGV 276

Query: 215 ----------------------MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA 252
                                 +ID Y  ++G +  AR +F+ M  K+++SWN+M+ GYA
Sbjct: 277 VDSMVKYIEDKHVDIDVYLGNSLIDMY-GRRGLVDLARRVFDRMQEKNIVSWNAMLTGYA 335

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
             GDLVAA++LFNEMP RNV SW+ MI G AQ     +AL LF+EM+   V+PD I+V  
Sbjct: 336 TAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSS 395

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
            +SAC+ +G LD G+ +H +M R  I  D+ V  ALIDMY KCG +D+A  +F+ M KK+
Sbjct: 396 VLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKKKD 455

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
            +S+  MI GL +NGF +   + F+QM  +G+      F+G+L+AC+H+GL  +G   F+
Sbjct: 456 SVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGILLACTHAGLVDKGLEYFE 515

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV 492
           SM+   G+ P+++HY C+VDLLSR+GEL++A   ++ MP+ P++ LW  LL AC+ H+N+
Sbjct: 516 SMEHVYGLRPEMKHYGCVVDLLSRSGELDRAYEFIKQMPVVPDVVLWRILLSACKLHRNL 575

Query: 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
            LAE+    L+EL   + G YVLLSN YA +  W+ A R+R +M    ++K +  S IE+
Sbjct: 576 VLAEIATSKLLELDPSNSGNYVLLSNTYAGSDRWDDASRMRDLMVVGDVQKPSSWSSIEV 635

Query: 553 DG 554
            G
Sbjct: 636 IG 637


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/602 (37%), Positives = 345/602 (57%), Gaps = 43/602 (7%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERLFNQ 71
           +P +SLL   KT   +  I A++    L    + LS+L+  S+ SP+   +  A  +F+ 
Sbjct: 3   HPSLSLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDS 62

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           I +PN  + NTM RG+  SS+P  AL  YV M   GL+ ++YT+PF+LKAC       EG
Sbjct: 63  IQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREG 122

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            +IHG V+K+G   D++V   LI MY K G    AR VF+ S  +D+VS+  +++G+   
Sbjct: 123 QQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASN 182

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM------PIKDLI--- 242
           G +  A+++FDE+P KD +SW+ +I GY  + G+   A  LF+ M      P +  +   
Sbjct: 183 GYIXSAQKMFDEIPVKDVVSWNALISGY-AETGNYKEALELFKEMMKTNVKPDESTMVTV 241

Query: 243 -----------------SW-------------NSMIDGYAKIGDLVAAQQLFNEMPERNV 272
                            SW             N++ID Y K G++  A  LF  +  ++V
Sbjct: 242 LSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDV 301

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
            SW+ +I GY      KEAL LF+EML  G  P+ ++++  + ACA +GA+D+G+WIHV+
Sbjct: 302 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVY 361

Query: 333 M-KRSR-ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
           + KR + ++    ++T+LIDMY KCG ++ A+++F SM  +++ S+N MI G  M+G   
Sbjct: 362 IDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRAN 421

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
            A   F++M  +GI  DD+ F+G+L ACSHSG+   G  IF+SM     I PKLEHY C+
Sbjct: 422 PAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCM 481

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           +DLL  +G  ++A  ++ SM M P+  +W +LL AC+ H NV L E   + L++++  + 
Sbjct: 482 IDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNS 541

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570
           G YVLLSNIYA AG W    + R ++  + +KK  G S IEID  + EF+ G+    ++ 
Sbjct: 542 GSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNR 601

Query: 571 EL 572
           E+
Sbjct: 602 EI 603


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/459 (43%), Positives = 297/459 (64%), Gaps = 1/459 (0%)

Query: 114 TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS 173
           TYPFV+KAC        G  +H  VVK GF CD ++VN LI +Y+    +G A+ +F   
Sbjct: 2   TYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLC 61

Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILF 233
             +D+VSWN ++ G+V+ GEMG  R VFD M  +D ISW+ +I+GY    G I  A+ LF
Sbjct: 62  SDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGY-AIVGKIDEAKRLF 120

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
           + MP ++L+SWNSM+ G+ K G++  A  LF+EMP R+V SW+ M+  YAQ G P EAL 
Sbjct: 121 DEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALA 180

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           LF +M   GV+P   +V+  +SACA +GALD G  +H ++  +RI ++ IV TAL+DMY 
Sbjct: 181 LFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYA 240

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCG +  A ++F +M  K+V+++N +IAG+ ++G  +EA + F +M+   +  +D+ F+ 
Sbjct: 241 KCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVA 300

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           +L ACSH+G+  EG ++   M    GIEPK+EHY C++DLL+RAG LE+A+ ++ +MPM+
Sbjct: 301 MLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPME 360

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
           PN +  G LL  CR H N  L E+V + L+ L+    G Y+LLSNIYA A  W+ A ++R
Sbjct: 361 PNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVR 420

Query: 534 KMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            +M+   I K  G SVIE+ G +  FV+G+    +S ++
Sbjct: 421 NLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKI 459



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 113/244 (46%), Gaps = 25/244 (10%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N+++A  LF+++   +    N+M+  Y Q   P +AL+ +  M+  G+     T   +L 
Sbjct: 143 NVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLS 202

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L +G  +H  +       +  V   L+ MY+KCG +  A  VF   E KD+++
Sbjct: 203 ACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLA 262

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQK-------------DAISWSIMIDGYRKKKGDIS 227
           WN ++ G    G + +A+++F EM +               A S + M+D  +K    +S
Sbjct: 263 WNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMS 322

Query: 228 SARIL---FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYA 283
           S+  +    EH        ++ +ID  A+ G L  A +L   MP E N  +   ++ G  
Sbjct: 323 SSYGIEPKVEH--------YDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCR 374

Query: 284 QHGN 287
            HGN
Sbjct: 375 IHGN 378


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/589 (37%), Positives = 336/589 (57%), Gaps = 43/589 (7%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
           +S L+  K+ TH+ QI AQ+    L  +  +L++L+   T P   N++ AE++F  I  P
Sbjct: 41  ISYLKSCKSMTHLKQIHAQIFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEKMFKYIRYP 100

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
              ++N +I+ + +  N ++ L  +  ++  GL  DN+TYPFV KA G L  + +  ++ 
Sbjct: 101 CLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLR 160

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
           G V K G   D +V N LI MY++       + +F+    +D++SWN+++ G+V+C    
Sbjct: 161 GLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFE 220

Query: 196 KAREVFDEMPQ----------------------------------KDAISWSIMI----- 216
            A  VF  M +                                  +D + ++ +I     
Sbjct: 221 DAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDNVKFTPIIGNALL 280

Query: 217 DGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
           D Y  K G +S AR +FE MP K++I W +M+ GYA  G+L  A++LF   P R+V  W+
Sbjct: 281 DMY-CKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWT 339

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS 336
            MI+GY Q     EA+ LFREM  + V+PD   V+  ++ CAQ GA++ GKWIH F+  +
Sbjct: 340 AMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDEN 399

Query: 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF 396
           RI +D +V TALI+MY KCG +++A  IFY +  K+  S+  +I GL MNG   +AL+ F
Sbjct: 400 RIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELF 459

Query: 397 AQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456
           ++M+  G+  DD+ F+GVL ACSH GL  EG + F SM+    I+PK+EHY CLVDLL R
Sbjct: 460 SKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGR 519

Query: 457 AGELEQALNIVESMPMKP---NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLY 513
           AG L +A  +++ +P +     + L+G+LL ACR + NV + E V + LV+ ++ D  ++
Sbjct: 520 AGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVAKQLVKFESSDSSVH 579

Query: 514 VLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
            LL+NIYA A  WE   ++R+ M+   +KK  G S IE+D  I EF SG
Sbjct: 580 TLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEVDSIIHEFFSG 628


>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
 gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
          Length = 565

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/535 (36%), Positives = 329/535 (61%), Gaps = 4/535 (0%)

Query: 17  SLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPN 76
           +LL++ KT   + Q+ A L    L  + F ++Q + +  S +  ++  +  +F+++  P+
Sbjct: 34  ALLKLCKTHIDLHQVHAHLIQKGLEQDSFLVTQFISA--SNSVAHISYSTSVFDRVLSPS 91

Query: 77  TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHG 136
           T++ N+++ GY         +S YV MKR+    D YT+P +LK C     ++EG  +HG
Sbjct: 92  TFLWNSLVSGYCAKLQFVDIISLYVRMKREDGAPDRYTFPSLLKVCASEGKMMEGMALHG 151

Query: 137 EVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGK 196
            +++ G   D++V   L+ +Y K G + CAR VF+G   +++VSW  ++ G+   G + +
Sbjct: 152 SILRCGVDEDIYVTTSLVNLYGKGGLIDCARKVFDGMSERNVVSWTAMIVGYSSIGNLVE 211

Query: 197 AREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGD 256
           A+ +FD MP+++  SW+ +I GY  K GD+ SA   F+ MP K+++S+ +MIDGYAK GD
Sbjct: 212 AKRLFDLMPERNVASWNAIIGGY-MKMGDVKSAEKAFDEMPEKNVVSFTTMIDGYAKAGD 270

Query: 257 LVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISA 316
           +++A+ LF + PER++ +WS +I GY Q+G P EA+  F EM  + V+PD   +   + A
Sbjct: 271 MLSARNLFQKAPERDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLA 330

Query: 317 CAQVGALDLGKWIHVFMKRSRITM-DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS 375
           C+Q+G LDL KW+  +  R  + +    V  ALIDM  KCG+++ A  +F  M K+++IS
Sbjct: 331 CSQLGNLDLAKWVDSYATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFEKMPKRDLIS 390

Query: 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMK 435
           Y  ++ GL ++G G++A+  F +M  E +  DD+ F  +L ACS +GL  EG+  F+ M+
Sbjct: 391 YCSVMQGLSIHGHGDQAVSLFERMLGEDLTPDDVAFTVILTACSRAGLVDEGWHYFEMMR 450

Query: 436 RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLA 495
               + P ++HY+C+VDLLSR+G L++A  +++S+P++ +   WG LL AC+ + +  LA
Sbjct: 451 CKYSMVPSVDHYACIVDLLSRSGRLKEAYELIKSVPVQSHAGAWGALLGACKLYCDSELA 510

Query: 496 EVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           EVV   L+E++ ++ G YVLLSNIYA A  W     +R  M +R ++K  G S I
Sbjct: 511 EVVASRLIEIEPENAGNYVLLSNIYAAADRWLDVSAVRNQMNERGLRKIPGCSWI 565


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/575 (36%), Positives = 337/575 (58%), Gaps = 7/575 (1%)

Query: 9   FSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERL 68
           + LK  L++ +   KT   + QI A L  + L+ + F LS++       +   +D A   
Sbjct: 2   YFLKLRLLNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKV-SEFFGKHIGFVDYAFDF 60

Query: 69  FNQI-YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
            NQ      T  +NT+I  Y  S  P+ A   Y  +   G + D YT+P VLKAC   +G
Sbjct: 61  LNQTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLG 120

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
           + EG ++HG  VKMGFLCD++V N L+  YS CG  G A  VF+   ++D+VSW  ++ G
Sbjct: 121 VQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISG 180

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR----ILFEHMPIKDLIS 243
           +V  G   +A  +F +M     ++  + +     + G +S  +    ++++      L+ 
Sbjct: 181 YVRTGLFDEAINLFLKMDVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVV 240

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
            N+++D Y K   L  A++LF+E+P+R++ SW+ +I G  Q   PK++L LF +M   GV
Sbjct: 241 GNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGV 300

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
            PD I +   +SACA +GALD G+W+  +++R  I  D+ + TAL+DMY KCG ++ A  
Sbjct: 301 EPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALH 360

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           IF  +  +N+ ++N ++ GL M+G G EALK F  M   GI  +++ FL +L AC HSGL
Sbjct: 361 IFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGL 420

Query: 424 ATEGYRIF-QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
             EG   F Q + +     P+LEHY C++DLL RAG L++A   + +MP+ P++ +WG L
Sbjct: 421 VAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGAL 480

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
           L AC+ + NV L++ ++  L+ELK+ D G+YVLLSNIYA    W+   R+R++M+ + I+
Sbjct: 481 LSACKANGNVELSQEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVRRLMKDKGIR 540

Query: 543 KETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           K  G SVIE+DG   EF+ G+    ++E++ +++ 
Sbjct: 541 KFPGSSVIEVDGEAHEFLVGDTNHSRNEDIHILLN 575


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/601 (35%), Positives = 341/601 (56%), Gaps = 39/601 (6%)

Query: 9   FSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERL 68
           F  +NPL+S+L+  K+   + QI AQ+ +  LI   F  S+L+       +  +D   R+
Sbjct: 54  FVRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRI 113

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL-VDNYTYPFVLKACGVLMG 127
             +I + N +  N  IRGY +S + +     Y  M   G L  DN+TYP +LK C     
Sbjct: 114 LYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYS 173

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
              G  + G V+K GF CD+FV N  I M   CG +  A  VF  S ++DLV+WN ++ G
Sbjct: 174 SCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITG 233

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDG-------------------YRK------- 221
            V+ G   +A +++ EM  +      I + G                   Y K       
Sbjct: 234 CVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFT 293

Query: 222 ------------KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269
                       K G++ +AR+LF++M  K L+SW +M+ GYA+ G L  A+++  ++PE
Sbjct: 294 IPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPE 353

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329
           ++V  W+ +I G  Q    KEAL LF EM  + + PD ++++  +SAC+Q+GALD+G WI
Sbjct: 354 KSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWI 413

Query: 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFG 389
           H +++R ++++D+ + TAL+DMY KCG++  A ++F  + ++N +++  +I GL ++G  
Sbjct: 414 HHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNA 473

Query: 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449
           ++AL  F++M   GI  D++ FLGVL AC H GL  EG + F  M     + PKL+HYSC
Sbjct: 474 QDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSC 533

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509
           +VDLL RAG LE+A  +V++MPM  + A+ G L  ACR + NV + E     L+E+   D
Sbjct: 534 MVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQD 593

Query: 510 CGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQS 569
            G YVLL+++Y++A MW+ A   RK+M  + ++K  G S++EI+G + EFV  ++   QS
Sbjct: 594 SGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEINGIVHEFVVRDVSHPQS 653

Query: 570 E 570
           E
Sbjct: 654 E 654


>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
           [Vitis vinifera]
 gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/550 (37%), Positives = 336/550 (61%), Gaps = 13/550 (2%)

Query: 38  NDLITEPFTLSQLLMSLTSPNTL--------NMDQAERLFN-QIYQPNTYMHNTMIRGYT 88
           N L T P   ++ + + +S   L         +  A R+F+ + ++ + ++ N+MI+ Y 
Sbjct: 4   NALETNPNLFTKFIATCSSIALLAPLYDPLAGIVHARRMFDHRPHRDDAFLCNSMIKAYV 63

Query: 89  QSSNPQKALSFYVNMKRK-GLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV 147
                 ++ + Y +++R      D++T+  + K+C + M + EG EIH  VV +GF  D+
Sbjct: 64  GMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDL 123

Query: 148 FVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK 207
           +    L+ MY+K G M CAR +F+    +  VSW  ++ G+V  G+M  A ++FD+M +K
Sbjct: 124 YAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEK 183

Query: 208 DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
           D+ +++ MID Y  K GD+ SAR LF+ MP + ++SW  MI GY+  G+L +A+ LF+ M
Sbjct: 184 DSAAFNTMIDAY-VKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAM 242

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ-GVRPDVISVMGAISACAQVGALDLG 326
           PE+N+FSW+ MI GY Q+  P EAL LF EM     + PD ++++  + A A +GALDLG
Sbjct: 243 PEKNLFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLG 302

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
            W+H F++R ++     V TALIDMY KCG + ++R +F +M +K   S+N +I    +N
Sbjct: 303 GWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAIN 362

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
           G  +EAL  F +M  +G   +++  +GVL AC+HSGL  EG R F++M+   G+ PK+EH
Sbjct: 363 GRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAMEEF-GLTPKIEH 421

Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506
           Y C+VDLL RAG L++A  ++ESMP + N  +  + L AC   ++V  AE V++  ++++
Sbjct: 422 YGCMVDLLGRAGCLQEAEKLMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAIKME 481

Query: 507 ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFD 566
           A + G Y++L N+YA+   W+ A  ++ +MR+  +KKE G S IE+D  + EFV+G+   
Sbjct: 482 AWNDGNYIMLRNLYANEKRWKEADEVKGLMRRNGVKKEAGCSAIEVDSRVWEFVAGDRVH 541

Query: 567 VQSEELELVI 576
            + E +  V+
Sbjct: 542 PKWEAIHSVL 551


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/604 (35%), Positives = 353/604 (58%), Gaps = 43/604 (7%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           +K+P +SLL+   T   I QI +Q     L +    L+++++   +  + ++  A ++F+
Sbjct: 35  VKSP-ISLLETCNTMYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFD 93

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
           +I QP+ ++ NTMI+GY++ +  +  +S Y  M    +  D +T+PF+LK     M L  
Sbjct: 94  EIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKY 153

Query: 131 GTEIHGEVVKMGFL-CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
           G  +    V  GFL  ++FV  G I ++S CG +  AR +F+  +  ++V+WN+VL G+ 
Sbjct: 154 GKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYN 213

Query: 190 ECGEMGKAREVFDEMPQK------DAISWSIMIDGYRKKK-------------------- 223
                 +++ +F EM +K      ++++  +M+    K K                    
Sbjct: 214 RFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEP 273

Query: 224 ---------------GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
                          G++ +AR +F+ M  +D+ISW S++ G+A    +  A++ F++MP
Sbjct: 274 NLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMP 333

Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328
           ER+  SW+ MIDGY +    KE L LFR+M    V+PD  +++  ++ACA +GAL+LG+W
Sbjct: 334 ERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEW 393

Query: 329 IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
              ++ +++I  D  +  ALIDMY KCG++++A++IF  M KK+  ++  MI GL  NG 
Sbjct: 394 AKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGH 453

Query: 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
           GEEAL  F+ M    +  D++ ++GV+ AC+H GL  +G   F +M    GI+P L HY 
Sbjct: 454 GEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYG 513

Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508
           C+VDLL RAG L++AL ++ +MP+KPN  +WG+LL ACR H+NV LAE+    ++EL+ +
Sbjct: 514 CMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPE 573

Query: 509 DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQ 568
           +  +YVLL NIYA    W++   +RKMM +R IKK  G S++E++G + EFV+G+    Q
Sbjct: 574 NGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQ 633

Query: 569 SEEL 572
           S+E+
Sbjct: 634 SKEI 637


>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 639

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/565 (37%), Positives = 333/565 (58%), Gaps = 11/565 (1%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           L SL    +   H+ ++ AQL  + L  +P   S+L+ S      L    + R+F     
Sbjct: 61  LASLPHGLQHLHHVQELHAQLLKHGLHLDPLAASKLISSYALQRRL--PASRRIFASFPN 118

Query: 75  P--NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
           P   T++ NT++R Y  ++ P  A+S +  M ++    D++TY F++KA     GL    
Sbjct: 119 PQATTFLPNTLLRAYALNALPHAAVSLFSAMPQR----DSFTYSFLIKALSS-SGLTPLR 173

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
            +H  VVK+G + D +V N LI  YSK G    A  VFE    +D VSWN  +   V  G
Sbjct: 174 AVHSHVVKLGSIEDTYVGNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQG 233

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA 252
           E+  AR +FDEMP KD +SW+ ++DGY  K G +  A  LF+ MP ++++SW++++ GY 
Sbjct: 234 EVASARRMFDEMPDKDTVSWNTVLDGY-TKAGKMEDAFELFQCMPERNVVSWSTVVSGYC 292

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
           K GD+  A+ +F++MP +N+ +W+IM+   AQ+G  +EA  LF +M    V  DV +V+ 
Sbjct: 293 KKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVS 352

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS-MTKK 371
            ++ACA+ G+L LGK IH +++  ++     V  A+IDM+ KCG ++ A  +F + + +K
Sbjct: 353 ILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEK 412

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           + +S+N +I G  M+G G++AL  FAQM+ +G   D +  + VL AC+H G   EG + F
Sbjct: 413 DSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGFVEEGRQHF 472

Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN 491
            +M+R  GI P++EHY C++DLL R G +E+A+ +++SMP  PN  +WG+LL ACR H+N
Sbjct: 473 SNMERDYGIVPQIEHYGCMIDLLGRGGLIEEAVGLIKSMPWDPNEVIWGSLLSACRLHKN 532

Query: 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
           V  AE+ V  L +L+  + G Y +LSNIYA+AG W    + R  M+    +K  G S IE
Sbjct: 533 VEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKSAGSSWIE 592

Query: 552 IDGNIKEFVSGEIFDVQSEELELVI 576
           +D    EF  G+     S+++  ++
Sbjct: 593 LDEAFHEFTVGDRKHSDSDQISEMV 617


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/558 (37%), Positives = 323/558 (57%), Gaps = 42/558 (7%)

Query: 56  SPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTY 115
           SP+      A  +F  I +PN  + NTM+RGY  SS+P  AL  YV M   GLL ++YT+
Sbjct: 10  SPHFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTF 69

Query: 116 PFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI 175
           PF+LK+C       EG +IHG V+K+G+  D++V   LI MY++ G +  A  VF+ S  
Sbjct: 70  PFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSH 129

Query: 176 KDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEH 235
           +D+VS+  ++ G+   G +  A+E+FDE+P KD +SW+ MI GY  + G    A  LF+ 
Sbjct: 130 RDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGY-AETGSYKEALELFKE 188

Query: 236 M------PI--------------------KDLISW-------------NSMIDGYAKIGD 256
           M      P                     + + SW             N++ID Y+K G 
Sbjct: 189 MMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQ 248

Query: 257 LVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISA 316
           +  A  LF  +  ++V SW+ +I GY      KEAL LF+EML  G  P+ ++++  + A
Sbjct: 249 VETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPA 308

Query: 317 CAQVGALDLGKWIHVFM--KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
           CA +GA+D+G+WIHV++  K   +T    ++T+LIDMY KCG ++ A ++F SM  K++ 
Sbjct: 309 CAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLS 368

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434
           S+N MI G  M+G        F++M   GI  DD+ F+G+L ACSHSG    G  IF+SM
Sbjct: 369 SWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSM 428

Query: 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTL 494
            +   I PKLEHY C++DLL  +G  ++A  ++++MPM+P+  +W +LL ACR H N+ L
Sbjct: 429 TQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLEL 488

Query: 495 AEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDG 554
           AE     L++++ ++ G YVLLSNIYA AG W+   ++R ++  + +KK  G S IEID 
Sbjct: 489 AESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDS 548

Query: 555 NIKEFVSGEIFDVQSEEL 572
            + EF+ G+    ++ E+
Sbjct: 549 EVHEFIVGDKLHPRNREI 566


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/570 (37%), Positives = 336/570 (58%), Gaps = 43/570 (7%)

Query: 45  FTLSQLL-MSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM 103
           + LS+LL   + +P    +  A  +F  I +PN    NTMIRG+  SS+P  AL+ YV M
Sbjct: 10  YALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYM 69

Query: 104 KRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHM 163
              GL  ++YT+PF+ K+C       EG +IH +++K G   D+ V   LI MY++ G +
Sbjct: 70  ISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIV 129

Query: 164 GCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK 223
             A  VF+ S  +D+VS+  ++ G+   G M KA+++FDE+P KD +SW+ MI GY  + 
Sbjct: 130 EDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGY-AEI 188

Query: 224 GDISSARILFEHMPIKD--------------------------LISW------------- 244
           G    A  LF  M   D                          + SW             
Sbjct: 189 GRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLV 248

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           N++ID Y+K G++  A  LF  +  ++V SW+ +I GYA   + KEAL +F+EML  G  
Sbjct: 249 NALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGET 308

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFM--KRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           P+ ++++  + ACA +GA+D+G+WIHV++  K   I  +  +QT+LIDMY KCG+++ A 
Sbjct: 309 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAAN 368

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
           ++F ++  K++ S N MI G  M+G  + A    ++M+ +GI  DD+ F+G+L ACSH+G
Sbjct: 369 QVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAG 428

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
           L+  G +IF+SM     IEPKLEHY C++DLL R+G  ++A  ++ SM M+P+  +WG+L
Sbjct: 429 LSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSL 488

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
           L AC+ H+N+ L E++ + L++++  + G YVLLSNIYA +  W+   R+R ++  + +K
Sbjct: 489 LKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLK 548

Query: 543 KETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           K  G S IEID  + EF+ G+ F  Q++E+
Sbjct: 549 KVPGCSSIEIDSMVHEFLIGDKFHPQNKEI 578


>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
          Length = 567

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 198/508 (38%), Positives = 310/508 (61%), Gaps = 39/508 (7%)

Query: 77  TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE-GTEIH 135
           T++HN +IR    S++P+ + + + ++ R GL+ D +T P +L + G L      G ++H
Sbjct: 59  TFLHNILIRASASSASPRLSFAAFSSLLRCGLVPDRFTLPPLLGSAGKLPAFPRTGAQVH 118

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG-SEIKDLVSWNLVLRGFVECGEM 194
            + V+ GFL DVFVVN L+ MY         R VF   + + D+VSWN V+ G+V+CGEM
Sbjct: 119 AQAVRRGFLADVFVVNALLAMYGALRDAASMREVFGSCAGVADVVSWNTVIGGYVKCGEM 178

Query: 195 GKAREVFDEMPQKDAISWSIMIDGYRK--------------------------------K 222
             A+ VFDEMP+++ +SWS M+ GY                                  +
Sbjct: 179 ESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFAR 238

Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
            G +  AR +F+ MP+++L+SWN+M+ GY+   D+  A++LF+ MPE++V SW+ MI GY
Sbjct: 239 HGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGY 298

Query: 283 AQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
           AQ G  ++ L LFR M  +  V+P+ ++++  +SACA + AL+ G+W+H F+ + ++ ++
Sbjct: 299 AQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLN 358

Query: 342 --MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
               +  ALIDMY KCG  D A +IF S+ +KNV ++N +I  L MNG  ++++  F QM
Sbjct: 359 NEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQM 418

Query: 400 ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
           +  G   +D+ F+GVL ACSH GL  EG R FQSM   CG++P+++HY C+VD+L RAG 
Sbjct: 419 KRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGL 478

Query: 460 LEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL--VELKADDCGLYVLLS 517
           LE+A  ++ SMPM P++ ++G LL ACR H+   +AE V   +  + L A   G +VL+S
Sbjct: 479 LEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLIS 538

Query: 518 NIYADAGMWEHALRIRKMMRKRKIKKET 545
           +IYA AG W   L  R+++++  I+K T
Sbjct: 539 DIYAAAGKWFDVLEARQVVQRSGIRKWT 566



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 156/364 (42%), Gaps = 85/364 (23%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           M+ A+R+F+++ + N    +TM+ GY  +     A   +  M   G              
Sbjct: 178 MESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGR------------- 224

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
                                   +V   N ++  +++ G +  AR +F+   +++LVSW
Sbjct: 225 ------------------------NVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSW 260

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
           N +LRG+    +M  ARE+FD MP+KD +SW+ MI GY  + G       LF  M  +  
Sbjct: 261 NAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGY-AQAGRYQDTLELFRAMQTESN 319

Query: 242 ISWN------------------------------------------SMIDGYAKIGDLVA 259
           +  N                                          ++ID YAK G    
Sbjct: 320 VQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDI 379

Query: 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
           A ++FN +  +NV +W+ +I   A +GN ++++  F +M   G +P+ I+ +G ++AC+ 
Sbjct: 380 AVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKPNDITFVGVLTACSH 439

Query: 320 VGALDLGKWIHVFMKRS-RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNV 378
            G +D G+     M  +  +  ++     ++DM  + G L+EA  +  SM     ++ +V
Sbjct: 440 GGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMP----MAPDV 495

Query: 379 MIAG 382
           M+ G
Sbjct: 496 MVFG 499



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 91/219 (41%), Gaps = 11/219 (5%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDN-YTYPFVL 119
           +MD A  LF+ + + +      MI GY Q+   Q  L  +  M+ +  +  N  T   VL
Sbjct: 272 DMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVL 331

Query: 120 KACGVLMGLVEGTEIHG--EVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
            AC  L  L EG  +H   +  KM    +  +   LI MY+KCG    A  +F   + K+
Sbjct: 332 SACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKN 391

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR---KKKGDISSARILFE 234
           + +WN ++      G    + + F++M +       I   G        G +   R  F+
Sbjct: 392 VSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQ 451

Query: 235 HMPI-----KDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
            M        ++  +  M+D   + G L  A++L   MP
Sbjct: 452 SMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMP 490


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/570 (37%), Positives = 334/570 (58%), Gaps = 47/570 (8%)

Query: 12  KNPLVSLLQI--SKTTT---HILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAE 66
           K P  ++L++  SK+ T   ++ Q+ A +  +    + +    LL    +P+  N D A 
Sbjct: 28  KLPQKTVLKLFDSKSITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFAL 87

Query: 67  RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVD----NYTYPFVLKAC 122
           ++F+ I  PN ++ N +I+G  +++   KA+ FY  M     ++D     +TYP + KAC
Sbjct: 88  KVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRM-----VIDARPNKFTYPTLFKAC 142

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
            V   + EG +IHG VVK G   DV + +  I MY+  G +  AR +F   E        
Sbjct: 143 SVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGE-------- 194

Query: 183 LVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLI 242
                                    D + W+ MIDGY K  G + +A+ LF  MP+K++ 
Sbjct: 195 ------------------------SDVVCWNTMIDGYLKC-GVLEAAKGLFAQMPVKNIG 229

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
           SWN MI+G AK G+L  A++LF+EM ER+  SWS M+DGY   G  KEAL +F++M  + 
Sbjct: 230 SWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREE 289

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
            RP    +   ++AC+ +GA+D G+W+H ++KR+ I +D ++ TAL+DMY KCG LD   
Sbjct: 290 TRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGW 349

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
            +F  M ++ + ++N MI GL ++G  E+AL+ F++++   +  + +  +GVL AC+H+G
Sbjct: 350 EVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAG 409

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
              +G RIFQ+M+   G++P+LEHY C+VDLL R+G   +A +++ SMPMKPN A+WG L
Sbjct: 410 FVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGAL 469

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
           L ACR H N  LAE V + L+EL+  + G YVLLSNIYA  G ++   +IRK+M+ R IK
Sbjct: 470 LGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIK 529

Query: 543 KETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
              G S+++++G + EF  G+    Q +E+
Sbjct: 530 TVPGVSIVDLNGTVHEFKMGDGSHPQMKEI 559


>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
 gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/545 (37%), Positives = 329/545 (60%), Gaps = 9/545 (1%)

Query: 9   FSLKNPLVSLLQIS-KTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAER 67
            S  NP +SLL  S KT  H+ Q  A +    L  + F +S  L   TS     +  +  
Sbjct: 5   LSSSNPSISLLIKSCKTIPHLHQFHAHIIHKGLEQDHFIISHFLSISTS-----VSYSTS 59

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGL-LVDNYTYPFVLKACGVLM 126
           +FN++  P+T+++N +++ ++++S      S +  MK+    L D YTYP ++K C   +
Sbjct: 60  IFNRLLNPSTFLYNILLKIFSKNSQFIDTFSLFYRMKQSEYALSDKYTYPLLIKVCSNEL 119

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
            L EG  +HG  ++ G   DV+V + LI  Y KC  +  AR VF+    +++VSW  ++ 
Sbjct: 120 RLKEGEIVHGSAIRCGVSDDVYVGSSLISFYGKCKEILSARKVFDEIPERNVVSWTAMVA 179

Query: 187 GFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNS 246
           G+   G++  A+ VF+ MP+++  SW+ MI G   K GD+S AR +F+ M  ++++S+  
Sbjct: 180 GYASVGDLENAKRVFERMPERNLPSWNAMISGL-GKAGDLSGARKVFDEMVERNVVSFTV 238

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           MIDGYAK+GD+ +A+ LF+E PE++V +WS +I GY+++  P EA+ +F EM+   V+PD
Sbjct: 239 MIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPD 298

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRI-TMDMIVQTALIDMYMKCGSLDEARRIF 365
              ++  +SAC+Q+G  DL KW+  ++ ++ I T    V  ALIDM+ KCG++++A ++F
Sbjct: 299 EFIMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLF 358

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
             M  +++I    +I GL ++G G EA++ F +M  EG+  D + F  +L ACS  GL  
Sbjct: 359 QDMPSRDLIPCCSLIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAFTVILTACSRGGLIE 418

Query: 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
           +G+  F +MK    + P   HY+C+VDLLSRAG+L  A ++++SMP+KP+   WG LL A
Sbjct: 419 DGWHFFDTMKNKYSVVPSPNHYACMVDLLSRAGQLRAAYDLLKSMPLKPHACAWGALLGA 478

Query: 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
           C+ H +V L E V   L+EL+ +  G YVLLSNIYA A  W     +R  M++R I+K  
Sbjct: 479 CKLHGDVELREEVANRLLELEPEKAGSYVLLSNIYASANQWLDVSIVRDEMKERGIRKIP 538

Query: 546 GRSVI 550
           G S I
Sbjct: 539 GCSYI 543


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/564 (38%), Positives = 322/564 (57%), Gaps = 36/564 (6%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           ++   VSLL    +     QI AQ+    L T+P    +LL+      +  +  A RLF+
Sbjct: 1   MEEAWVSLLSKCSSLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFH 60

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV-DNYTYPFVLKACGVLMGLV 129
               P+T+MHNT+IR  + S  P  +L  ++ ++R+  L  D++T+ F LKA      L 
Sbjct: 61  HFPNPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLR 120

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
            G ++H +  + GF   +FV   LI MY+                               
Sbjct: 121 PGIQLHSQAFRHGFDAHIFVGTTLISMYA------------------------------- 149

Query: 190 ECGEMGKAREVFDEMPQKDAISW-SIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMI 248
           ECG+ G AR VFDEM + + ++W +++   +R   GD+  A+ +F  MP+++L SWN M+
Sbjct: 150 ECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRC--GDVEGAQDVFGCMPVRNLTSWNGML 207

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
            GYAK G+L  A+++F EMP R+  SWS MI G+A +G   EA   FRE+L + +R + +
Sbjct: 208 AGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEV 267

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           S+ G +SACAQ GA + GK +H F++++       V  ALID Y KCG++  AR +F +M
Sbjct: 268 SLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNM 327

Query: 369 -TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
              ++++S+  +IAGL M+G GEEA++ F +ME  G+  D + F+ +L ACSHSGL  EG
Sbjct: 328 PVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEG 387

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
             +F  MK   GIEP +EHY C+VDL  RA  L++A   +  MP+ PN  +W TLL AC 
Sbjct: 388 CGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACS 447

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
            H N+ +AE+V   L E+  D+ G +VLLSN+YA AG W+    IR+ M +  +KK  G 
Sbjct: 448 IHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTPGW 507

Query: 548 SVIEIDGNIKEFVSGEIFDVQSEE 571
           S+IEID  I  FV+GE  +  +EE
Sbjct: 508 SMIEIDKVIYGFVAGEKPNEVTEE 531


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/608 (36%), Positives = 352/608 (57%), Gaps = 42/608 (6%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           + NP + +LQ   +   + QI A +T   L+ + F  S+LL      ++ ++  A  +F+
Sbjct: 51  ISNPTLLILQSCSSMFQLKQIQAHITCTGLMNQIFPASRLLAFCALSDSGDIHYAHLIFD 110

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
           Q   PN +  NTMI+GY ++++P    SF+  M R     D+ ++ F LKACG     + 
Sbjct: 111 QTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIV 170

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G  +H  + K GF  D+FV NGLI  Y + G +G AR +F+ S +KD+V+W  ++ G+  
Sbjct: 171 GMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYAR 230

Query: 191 CGEMGKAREVFDEMPQKDA----------------------------------ISWSI-- 214
              + +A  +F+ M   D                                   I+ S+  
Sbjct: 231 NNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNL 290

Query: 215 ---MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271
              M+D Y  K G +++AR +F +M  +D+ SW S+++GYAK GDL +A++LF+EMPERN
Sbjct: 291 LNAMLDMY-VKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERN 349

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREML-CQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           + SW+ MI GY+Q+  P EAL LF  M+   G+ P   +++  +SA  Q+G L++G+ IH
Sbjct: 350 IVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIH 409

Query: 331 V-FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFG 389
              + +  I + +I++ A++DMY KCGS+D A ++F+SM +KN++S+N MI+     G  
Sbjct: 410 CNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHA 469

Query: 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449
           ++AL  F QM   G+  D + F+GVL ACS+ G  +EG   F+SM+   G+EPK EHY+C
Sbjct: 470 KKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKREHYAC 529

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509
           +VDLLSR G L++A  ++  MPM+ +   WG LL ACR H NV +A++  E L+EL  +D
Sbjct: 530 MVDLLSRVGLLKEAYELISRMPMEASEGGWGALLDACRKHGNVEMAKLAGEKLLELDPED 589

Query: 510 CGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQS 569
            G+Y LL+NI AD   W+    +R+MMR+R +KK  G S+IEI+G   EF+  +    +S
Sbjct: 590 SGIYSLLANICADGKKWKDVRMVRRMMRERGVKKVPGHSLIEIEGKFHEFLVADTSHTRS 649

Query: 570 EELELVIQ 577
            E+  V+ 
Sbjct: 650 SEIYRVVN 657


>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
          Length = 588

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/577 (37%), Positives = 326/577 (56%), Gaps = 43/577 (7%)

Query: 31  ILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMH---------N 81
           I A+L     I      ++++++  +     + +  R   Q Y   ++ H         N
Sbjct: 6   IXARLIKTGFIXNSNLTTRIVLAFAASRRPYLAEFARCVFQNYHSCSFAHGEVEDPFLWN 65

Query: 82  TMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKM 141
            +I+ ++   +P++AL ++  M   G+ VD ++   VLKAC  L  + EG +IHG + K 
Sbjct: 66  AVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIHGFLRKT 125

Query: 142 GFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVF 201
           G   D+F+ N LIG+Y KCG +G AR +F+    +D VS+N ++ G+V+CG +G ARE+F
Sbjct: 126 GIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELF 185

Query: 202 DEMPQ--KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVA 259
           D MP+  K+ ISW+ MI GY +    ++ A  LF  MP KDLISWNS+IDGY K G +  
Sbjct: 186 DLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHGRMED 245

Query: 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV---------------- 303
           A+ LF  MP R+V +W+ MIDGYA+ G   +A  LF +M  + V                
Sbjct: 246 AKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYN 305

Query: 304 ----------------RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA 347
                            PD  +++  +SA AQ+G L     +H+++   +  +   +  A
Sbjct: 306 MEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVA 365

Query: 348 LIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407
           LIDMY KCGS+ +A  +F  +  K++  +N MI GL ++G GE A     ++E   I  D
Sbjct: 366 LIDMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLEIERRSIKPD 425

Query: 408 DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467
           D+ F+G+L ACSHSGL  EG   F+ M+R   IEP+L+HY C+VD+LSR+G +E A N++
Sbjct: 426 DITFVGILNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLI 485

Query: 468 ESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWE 527
           E MPM+PN  +W T L AC +H+     EVV + L+     +   YVLLSN+YA  GMW+
Sbjct: 486 EEMPMEPNDVIWRTFLTACSHHKEFETGEVVAKHLILQAGYNPSSYVLLSNMYASFGMWK 545

Query: 528 HALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEI 564
            A R+R MM++R+++K  G S IE+DG + EF    I
Sbjct: 546 DARRVRTMMKERELQKVPGCSWIELDGRVHEFFVDSI 582


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/571 (37%), Positives = 333/571 (58%), Gaps = 49/571 (8%)

Query: 12  KNPLVSLLQI--SKTTTHILQILAQLT----TNDLITEPFTLSQLLMSLTSPNTLNMDQA 65
           K P  ++L++  SK+ T  LQ L QL      +    + +    LL    +P+  N D A
Sbjct: 28  KLPQKTVLKLFDSKSITS-LQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFA 86

Query: 66  ERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVD----NYTYPFVLKA 121
            ++F+ I  PN ++ N +I+G  +++   KA+ FY  M     ++D     +TYP + KA
Sbjct: 87  LKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRM-----VIDARPNKFTYPTLFKA 141

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C V   + EG +IHG VVK G   DV + +  I MY+  G +  AR +F   E       
Sbjct: 142 CSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGE------- 194

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
                                     D + W+ MIDGY K  G + +A+ LF  MP+K++
Sbjct: 195 -------------------------SDVVCWNTMIDGYLKC-GVLEAAKGLFAQMPVKNI 228

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
            SWN MI+G AK G+L  A++LF+EM ER+  SWS M+DGY   G  KEAL +F++M  +
Sbjct: 229 GSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQRE 288

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
             RP    +   ++AC+ +GA+D G+W+H ++KR+ I +D ++ TAL+DMY KCG LD  
Sbjct: 289 ETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMG 348

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
             +F  M ++ + ++N MI GL ++G  E+AL+ F++++   +  + +  +GVL AC+H+
Sbjct: 349 WEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHA 408

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           G   +G RIFQ+M+   G++P+LEHY C+VDLL R+G   +A +++ SMPMKPN A+WG 
Sbjct: 409 GFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGA 468

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           LL ACR H N  LAE V + L+EL+  + G YVLLSNIYA  G ++   +IRK+M+ R I
Sbjct: 469 LLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGI 528

Query: 542 KKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           K   G S+++++G + EF  G+    Q +E+
Sbjct: 529 KTVPGVSIVDLNGTVHEFKMGDGSHPQMKEI 559


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/581 (36%), Positives = 328/581 (56%), Gaps = 42/581 (7%)

Query: 24  TTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTM 83
            T  + QI A +       +P+T S+LL +    +   +  A+ +FNQI QPN Y  NT+
Sbjct: 84  NTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTL 143

Query: 84  IRGYTQSSNPQKALSFYVNMKRK-GLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMG 142
           IRGY  SS+P ++   +++M        + +T+PF+ KA   L  L  G+ +HG V+K  
Sbjct: 144 IRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKAS 203

Query: 143 FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFD 202
              D+F++N LI  Y   G    A  VF     KD+VSWN ++  F   G   KA  +F 
Sbjct: 204 LSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQ 263

Query: 203 EMPQKDA---------------------------------------ISWSIMIDGYRKKK 223
           EM  KD                                        I  + M+D Y K  
Sbjct: 264 EMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKC- 322

Query: 224 GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
           G I+ A+ LF  M  KD++SW +M+DG+AK+G+   A  +F+ MP +   +W+ +I  Y 
Sbjct: 323 GCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYE 382

Query: 284 QHGNPKEALYLFREM-LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
           Q+G P+ AL LF EM L +  +PD ++++ A+ A AQ+GA+D G WIHV++K+  I ++ 
Sbjct: 383 QNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNC 442

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
            + T+L+DMY KCG+L++A  +F+++ +K+V  ++ MI  L M G G+ AL  F+ M   
Sbjct: 443 HLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEA 502

Query: 403 GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
            I  + + F  +L AC+H+GL  EG ++F+ M+   GI P+++HY C+VD+  RAG LE+
Sbjct: 503 YIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEK 562

Query: 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522
           A + +E MP+ P  A+WG LL AC  H NV LAE+  + L+EL+  + G +VLLSNIYA 
Sbjct: 563 AASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAK 622

Query: 523 AGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           AG WE    +RK+MR   +KKE   S I+++G + EF+ G+
Sbjct: 623 AGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGD 663


>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
 gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
          Length = 531

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/552 (36%), Positives = 320/552 (57%), Gaps = 42/552 (7%)

Query: 17  SLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPN 76
           +L +  ++   I Q+ A +     +++P  L +L+ + +         A  +F++I  P+
Sbjct: 13  ALWRRCRSLRQIKQVHALMVLRGFLSDPSALRELIFASSVGVRGGTAHARLVFDRIPHPD 72

Query: 77  TYMHNTMIRGYTQSSNPQKALSFYVNMKRK------GLLVDNYTYPFVLKACGVLMGLVE 130
            +M+NT+IRG   S  P+ A+S Y  M R       G+  D  T+PFVL+AC  +     
Sbjct: 73  RFMYNTLIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVLRACAAMGASET 132

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G ++H  VVK G   D FV N LIGM++ CG                             
Sbjct: 133 GAQVHAHVVKAGCESDAFVRNALIGMHATCG----------------------------- 163

Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDG 250
             ++G A  +FD   ++DA++WS MI G+  ++GDI +AR LF+  P+KDL+SWN MI  
Sbjct: 164 --DLGAAAALFDGEAREDAVAWSAMISGF-ARRGDIGAARELFDESPVKDLVSWNVMITA 220

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           YAK+GD+  A++LF+  P+R+V SW+ MI GY + G+ K+A+ LF +M   G +PD +++
Sbjct: 221 YAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTM 280

Query: 311 MGAISACAQVGALDLGKWIHVFM--KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           +  +SACA  G +D G+ +H F+  + SRI    ++  ALIDMY KCGS+  A  +F+ M
Sbjct: 281 LSLLSACADSGDMDAGRRLHRFLSGRFSRIGPSTVLGNALIDMYAKCGSMTSALEVFWLM 340

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
             KNV ++N +I GL ++G   EA+  F +M    +  D++ F+ VL+ACSH G+  +G+
Sbjct: 341 QDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGNVKPDEITFVAVLVACSHGGMVDKGH 400

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
             F  M++   IEP ++HY C+VD+LSRAG L++A   + +M ++PN  +W TLL ACR 
Sbjct: 401 EYFNLMQQRYMIEPNVKHYGCMVDMLSRAGLLKEAFEFIGTMKIEPNPVIWRTLLGACRI 460

Query: 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRS 548
           H  + LAE   + L++ ++D  G +VLLSNIYA  G W  +  +RK+M    + KE G +
Sbjct: 461 HGELELAEHANQELLKARSDASGDFVLLSNIYASVGEWLGSENMRKLMDDSGVNKEAGCA 520

Query: 549 VIEIDGNIKEFV 560
           V  +DG+ K+ +
Sbjct: 521 V--VDGSSKDVI 530


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/602 (36%), Positives = 343/602 (56%), Gaps = 43/602 (7%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERLFNQ 71
           +P +SLL   KT   +  I AQ+    L    + LS+LL   + SP+   +  A  +F+ 
Sbjct: 3   HPSLSLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDT 62

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           I +P   + NTM RG+  SS+P  AL  YV M   GLL ++YT+PF+LK+C       EG
Sbjct: 63  IQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEG 122

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            ++HG+V+K GF  D+++   LI MY + G +  A+ V + S  +D+VS+  ++ G+   
Sbjct: 123 QQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASR 182

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM------PIKDLI--- 242
           G +  A ++FDE+P KD +SW+  I GY  + G+   A  LF+ M      P +  +   
Sbjct: 183 GXIESAHKMFDEIPVKDVVSWNAXISGY-AETGNYKEALELFKKMMKTNVRPDESTMVTV 241

Query: 243 -----------------SW-------------NSMIDGYAKIGDLVAAQQLFNEMPERNV 272
                            SW             N++ID Y+K G+L  A  LF  +  ++V
Sbjct: 242 LSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDV 301

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
            SW+ +I GY      KEAL LF++ML  G +P+ ++++  +SACA +GA+D+G+WIHV+
Sbjct: 302 ISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVY 361

Query: 333 MKR--SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
           + +    +T    ++T+LIDMY KCG ++ A+++F SM  +++ S+N MI G  M+G   
Sbjct: 362 IDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRAN 421

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
            A   F++M   GI  DD+ F+G+L ACSHSG+   G  IF+SM R   + PKLEHY C+
Sbjct: 422 AAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCM 481

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           +DL   +G  ++A  ++ +M M+P+  +W +LL AC+ H NV L E   + L++++ ++ 
Sbjct: 482 IDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENP 541

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570
           G YVLLSNIYA A  W    + R ++  + +KK  G S IEID  + EF+ G+ F  ++ 
Sbjct: 542 GSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNR 601

Query: 571 EL 572
           E+
Sbjct: 602 EI 603


>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 640

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/634 (34%), Positives = 354/634 (55%), Gaps = 67/634 (10%)

Query: 10  SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLF 69
           SL + L+   +  KT T I   L  L +  + +   TL++LL   +    ++   A +LF
Sbjct: 4   SLISKLLKQCRSLKTLTTIHAHL--LISGSIASSDLTLNKLLRLYSKFGAVSY--AHKLF 59

Query: 70  NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV 129
           ++  +PN+++   +I G+T+++  + A +F++ M R+ ++  N+T   VLKA   L  + 
Sbjct: 60  DETPEPNSFLWTALIHGFTENNQYENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRIK 119

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
           +G  ++G  V+ G+  D+ V N +I ++ +CG MG AR +F+  E +D VSWN ++ G+ 
Sbjct: 120 DGDLVYGLAVRCGYEFDLVVKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYG 179

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM------------- 236
             G +  AR++FD M +++ ISW+ MI GY  K GD+  AR+LFE M             
Sbjct: 180 NNGRVDIARKLFDRMEERNVISWTSMIQGY-VKAGDLLEARVLFERMPEKDLASWKVMVS 238

Query: 237 ------------------PIKDLISWNSMI------------------------------ 248
                             PI D+ +WN MI                              
Sbjct: 239 AYMSVGNLVAARNLFELMPIHDVGTWNLMISGCCKAGEMDAAKEFFDRMQERNVASWVMI 298

Query: 249 -DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
            DGY K+GD+ AA+ +F++MPE+N+ +WS MI GYA+ G+P  +L L++    QG++PD 
Sbjct: 299 IDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIKPDE 358

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
              +G ISAC+Q+G  D  + +        +  ++ V T+LIDMY KCG+++ A ++F  
Sbjct: 359 TFALGIISACSQLGVPDTAESVICDFVGPSLFPNLQVVTSLIDMYAKCGNIERAVQVFEM 418

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           + +K++  Y+ +I     +G  E+A+  F++M+   I  D + FLGVL AC+H GL  EG
Sbjct: 419 VDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKANIKPDGVAFLGVLTACNHGGLVGEG 478

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
            R+F+ M    GI+P  +HY+C+VD+L RAG LE+A +++ SMP+ PN  +WG LL ACR
Sbjct: 479 RRLFRQMIDEYGIQPSEKHYACMVDILGRAGCLEEAHSLICSMPVAPNATVWGALLSACR 538

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
            H NV LAE     L +++ ++ G YVLL NIYADAG W+   ++R M+R+ +++K  G 
Sbjct: 539 VHLNVQLAEAAATELFQIEPNNSGNYVLLFNIYADAGQWDDFSKVRAMIRENRVRKNRGS 598

Query: 548 SVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
           S IE+   I EFV G+     SE +  +++   K
Sbjct: 599 SWIELGSVIHEFVMGDKSHFDSERIFFMLELLCK 632


>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
           small; Tetratricopeptide-like helical [Medicago
           truncatula]
          Length = 971

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/591 (36%), Positives = 336/591 (56%), Gaps = 39/591 (6%)

Query: 9   FSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERL 68
           F  +NPL+S+L+  K+   + QI AQ+ +  LI   F  S+L+       +  +D   R+
Sbjct: 54  FVRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRI 113

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL-VDNYTYPFVLKACGVLMG 127
             +I + N +  N  IRGY +S + +     Y  M   G L  DN+TYP +LK C     
Sbjct: 114 LYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYS 173

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
              G  + G V+K GF CD+FV N  I M   CG +  A  VF  S ++DLV+WN ++ G
Sbjct: 174 SCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITG 233

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDG-------------------YRK------- 221
            V+ G   +A +++ EM  +      I + G                   Y K       
Sbjct: 234 CVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFT 293

Query: 222 ------------KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269
                       K G++ +AR+LF++M  K L+SW +M+ GYA+ G L  A+++  ++PE
Sbjct: 294 IPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPE 353

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329
           ++V  W+ +I G  Q    KEAL LF EM  + + PD ++++  +SAC+Q+GALD+G WI
Sbjct: 354 KSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWI 413

Query: 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFG 389
           H +++R ++++D+ + TAL+DMY KCG++  A ++F  + ++N +++  +I GL ++G  
Sbjct: 414 HHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNA 473

Query: 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449
           ++AL  F++M   GI  D++ FLGVL AC H GL  EG + F  M     + PKL+HYSC
Sbjct: 474 QDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSC 533

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509
           +VDLL RAG LE+A  +V++MPM  + A+ G L  ACR + NV + E     L+E+   D
Sbjct: 534 MVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQD 593

Query: 510 CGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
            G YVLL+++Y++A MW+ A   RK+M  + ++K  G S++EI+G + EFV
Sbjct: 594 SGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEINGIVHEFV 644


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/566 (37%), Positives = 342/566 (60%), Gaps = 18/566 (3%)

Query: 9   FSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERL 68
           F   +   SLL  S    H+ QI AQL  + L+   F +++ + +  S N   +  A ++
Sbjct: 68  FDFDSFFSSLLDHSVHKRHLNQIHAQLVVSGLVESGFLVTKFVNA--SWNIGEIGYARKV 125

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           F++  +P+ ++ N +IRGY+  +    A+  Y  M+  G+  D +T P VLKAC  +  L
Sbjct: 126 FDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVL 185

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
             G  +HG++ ++GF  DVFV NGL+ +Y+KCG +  AR VFEG + +++VSW  ++ G+
Sbjct: 186 EVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGY 245

Query: 189 VECGEMGKAREVFDEMPQKDA-ISWSIMIDGYRKKKG--DISSARIL--------FEHMP 237
            + G   +A  +F +M Q++    W  ++   R      D+   + +         E  P
Sbjct: 246 GQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEP 305

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
              LIS  +M   YAK G ++ A+  F++M   NV  W+ MI GYA++G   EA+ LF+E
Sbjct: 306 -DLLISLTAM---YAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQE 361

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
           M+ + +R D I+V  AI ACAQVG+LDL KW+  ++ ++    D+ V TALIDM+ KCGS
Sbjct: 362 MISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGS 421

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
           +D AR +F     K+V+ ++ MI G G++G G++A+  F  M+  G+  +D+ F+G+L A
Sbjct: 422 VDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTA 481

Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
           C+HSGL  EG+ +F SMK + GIE + +HY+C+VDLL R+G L +A + + +MP++P ++
Sbjct: 482 CNHSGLVEEGWELFHSMKYY-GIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVS 540

Query: 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537
           +WG LL AC+ +++VTL E   E L  L   + G YV LSN+YA + +W+   ++R +MR
Sbjct: 541 VWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMR 600

Query: 538 KRKIKKETGRSVIEIDGNIKEFVSGE 563
           ++ + K+ G S+IEI+G ++ F  G+
Sbjct: 601 EKGLSKDLGYSLIEINGKLQAFRVGD 626


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/575 (36%), Positives = 344/575 (59%), Gaps = 20/575 (3%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
            SL+  S     + QI A+L    L    F +++L+ + +S   +    A ++F+ + +P
Sbjct: 25  ASLIDSSTHKAQLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITF--ARQVFDDLPRP 82

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
             +  N +IRGY+++++ Q AL  Y  M+   +  D++T+P +LKACG L  L  G  +H
Sbjct: 83  QVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVH 142

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI--KDLVSWNLVLRGFVECGE 193
            +V ++GF  DVFV NGLI +Y+KC  +GCAR+VFEG  +  + +VSW  ++  + + GE
Sbjct: 143 AQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGE 202

Query: 194 MGKAREVFDEMPQKDAI-----------SWSIMIDGYRKKKGDISSARILFEHMPIKDLI 242
             +A E+F +M + D             +++ + D  + +    S  ++  E  P   LI
Sbjct: 203 PVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEP-DLLI 261

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
           S N+M   YAK G +  A+ LF++M   N+  W+ MI GYA++G  K+A+ LF EM+ + 
Sbjct: 262 SLNTM---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKD 318

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           VRPD IS+  AISACAQVG+L+  +W+  ++ RS    D+ + +ALIDM+ KCGS++ AR
Sbjct: 319 VRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECAR 378

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
            +F     ++V+ ++ MI G G++G   EA+  +  ME +G+  +D+ FLG+LIAC+HSG
Sbjct: 379 SVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSG 438

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
           +  EG+  F  M  H  I P+ +HY+C++DLL RAG L+QA  +++ MP++P + +WG L
Sbjct: 439 MVREGWWFFNRMADH-KINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGAL 497

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
           L AC+ H++V L +   + L  +   + G YV LSN+YA A +W+    +R  M+++ + 
Sbjct: 498 LSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLN 557

Query: 543 KETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           K+ G S +E+ G ++ F  G+    + EE+E  ++
Sbjct: 558 KDVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVE 592


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/480 (41%), Positives = 303/480 (63%), Gaps = 2/480 (0%)

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           M R  +L    ++  +L++C +      G   H +++KMGF  D+ +  GL+  Y+K G 
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK 222
           + CA+ VF G   +D+V+ N ++    + G + +AR +FD M ++++ SW+ MI  Y  K
Sbjct: 61  LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCY-CK 119

Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM-PERNVFSWSIMIDG 281
            GDI+SAR++F+  P+KD++SWN++IDGY K   LVAAQ+LF  M   RN  +W+ MI  
Sbjct: 120 LGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISA 179

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
           Y Q G    A+ +F++M  + V+P  ++++  +SACA +GALD+G+WIH +++  R+ +D
Sbjct: 180 YVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKID 239

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
           +++  ALIDMY KCG+L+ A  +F+ +++KN+  +N +I GLGMNG GEEA+  F  ME 
Sbjct: 240 VVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEK 299

Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
           EGI  D + F+G+L  CSHSGL + G R F  M    G+EP +EHY C+VDLL RAG L+
Sbjct: 300 EGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLK 359

Query: 462 QALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521
           +AL ++ +MPMKPN  + G+LL AC+ H++  L E V + L+EL   D G YV LSN+YA
Sbjct: 360 EALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYA 419

Query: 522 DAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
               W+     RK+M KR + K  G S IE++  + EFV+G+    Q  ++   +    K
Sbjct: 420 SLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAK 479



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 104/248 (41%), Gaps = 38/248 (15%)

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           N+   NTMI  Y Q      A+S +  M+ + +     T   +L AC  L  L  G  IH
Sbjct: 169 NSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIH 228

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
           G +       DV + N LI MY KCG +  A  VF G   K++  WN ++ G    G  G
Sbjct: 229 GYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGL---GMNG 285

Query: 196 KAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-DLISWNSMIDGYAKI 254
           +  E                            +A I+ E   IK D +++  ++ G +  
Sbjct: 286 RGEEAI--------------------------AAFIVMEKEGIKPDGVTFVGILSGCSHS 319

Query: 255 GDLVAAQQLFNEM-----PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
           G L A Q+ F+EM      E  V  +  M+D   + G  KEAL L R M    ++P+ + 
Sbjct: 320 GLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAM---PMKPNSMV 376

Query: 310 VMGAISAC 317
           +   + AC
Sbjct: 377 LGSLLRAC 384


>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/536 (37%), Positives = 315/536 (58%), Gaps = 35/536 (6%)

Query: 9   FSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERL 68
           F L NP +SLL+  K+ + + QI +Q+    LI + F  S+L+         ++D    +
Sbjct: 47  FVLSNPFLSLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNI 106

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVN-MKRKGLLVDNYTYPFVLKACGVLMG 127
                 PNT+  N  IRG+  S NP++A+  Y   ++  G   DNYTYP + KAC  L  
Sbjct: 107 LFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSL 166

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
           +  G+EI G V+ +GF  D+FV N +I +                               
Sbjct: 167 IRMGSEILGHVLHLGFDSDIFVSNAVIHL------------------------------- 195

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM 247
            V CG++  AR++FD+   +D +SW+ MI+GY    G++ SAR LF+ M  K ++SW +M
Sbjct: 196 LVSCGDLDGARKMFDKSCVRDLVSWNSMINGY---CGNLESARKLFDSMTNKTMVSWTTM 252

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           + GYA+ G L  A +LF+EMP+++V  W+ MI GY      KEAL LF EM    + PD 
Sbjct: 253 VVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDE 312

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           ++++  +SAC+Q+GALD+G WIH ++++  +++++ + TALIDMY KCG + +A ++F  
Sbjct: 313 VTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQE 372

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           +  +N +++  +I+GL ++G    A+  F++M    +  D++ FLG+L AC H GL  EG
Sbjct: 373 LPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEG 432

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
            + F  M     + PKL+HYSC+VDLL RAG LE+A  +++SMP++ +  +WG L  ACR
Sbjct: 433 RKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACR 492

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
            H NV + E     L+++   D G+YVLL+N+Y +A MW+ A + RK+MR+R ++K
Sbjct: 493 IHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEK 548


>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 519

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/531 (39%), Positives = 321/531 (60%), Gaps = 42/531 (7%)

Query: 27  HILQILAQLTTN-----DLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHN 81
           H L I+     N     DL+    T+S  L+  T+  T+  + A +LF QI QP+T+M+N
Sbjct: 22  HALMIINGFNNNVNFLGDLV---LTISTSLVGPTATPTVT-NYAHQLFAQIPQPDTFMYN 77

Query: 82  TMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKM 141
            MIRG +QS NP +A+S Y  M R  +  D+YT+PFVLKAC  L  +  G+ +HG V+++
Sbjct: 78  VMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTRLFWVNTGSAVHGMVLRL 137

Query: 142 GFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVF 201
           GF  +  V N L+  ++KCG +  A S+F+ S   D+V+W+ ++ G+   G++  AR++F
Sbjct: 138 GFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSLIAGYARRGDLKVARKLF 197

Query: 202 DEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQ 261
           +EMP++D +SW++MI GY  K+G++ SAR+LF+  P+KD++SWN+MI GY   G    A 
Sbjct: 198 NEMPERDLVSWNVMITGY-VKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQAL 256

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
           +LFNEM    VF                               PD ++++  +SACA +G
Sbjct: 257 ELFNEMCRAGVF-------------------------------PDEVTLLSLLSACADLG 285

Query: 322 ALDLGKWIHV-FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMI 380
            L+ GK +H   M+ S   +  ++  ALIDMY KCG++ E+  +F+S+T K+VIS+N +I
Sbjct: 286 DLENGKKVHAKVMEISMGKLSTLLGNALIDMYAKCGNIKESLDVFWSITDKDVISWNSVI 345

Query: 381 AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGI 440
            G+ ++G G+E+L  F  M+   I  +++ F+GVL+ACSH+G   EGY+ F  M     I
Sbjct: 346 VGMALHGHGKESLSLFKMMQRTKICPNEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKI 405

Query: 441 EPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVE 500
           EP + H  C+VD+L RAG L++A   ++SM ++PN  +W TLL AC+ H +V LA+V  E
Sbjct: 406 EPNIRHCGCMVDMLGRAGLLKEAAKFIDSMKIEPNAIIWRTLLAACKVHGDVELAKVANE 465

Query: 501 GLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
            L  ++ D  G YVL+SN+YA  G W+ A ++RK+M    + K  G S +E
Sbjct: 466 KLFSMRKDHSGDYVLMSNLYASRGEWDGAEKVRKLMDDSGVTKIRGSSFVE 516


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/562 (37%), Positives = 330/562 (58%), Gaps = 42/562 (7%)

Query: 52  MSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVD 111
           + + SP+   +  A  +F  I +PN  + NTMIRG+  SS+P  +L+ YV M   GLL +
Sbjct: 4   LCVPSPHFDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPN 63

Query: 112 NYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE 171
           +YT+PF+LK+C       EG +IHG+V+K+GF  D++V   LI MY +   +  A  VF+
Sbjct: 64  SYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFD 123

Query: 172 GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI 231
            S  +D+VS+  ++ G+   G++  A+++FDE+P KD +SW+ MI GY  + G    A  
Sbjct: 124 RSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGY-AETGCYKEALE 182

Query: 232 LFEHM------PI--------------------KDLISW-------------NSMIDGYA 252
           LFE M      P                     + + SW             N++ID Y+
Sbjct: 183 LFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYS 242

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
           K G++  A  LF  +  ++V SW+ +I GY      KEAL LF+EML  G  P+ ++++ 
Sbjct: 243 KCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLS 302

Query: 313 AISACAQVGALDLGKWIHVFMKR--SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
            + ACA +GA+D+G+WIHV++ +    +T    ++T+LIDMY KCG ++ A ++F SM  
Sbjct: 303 VLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLH 362

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           K++ S+N MI G  M+G  + +   F++M   GI  DD+ F+G+L ACSHSG+   G  I
Sbjct: 363 KSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHI 422

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
           F+SM +   + PKLEHY C++DLL  +G  ++A  ++ +M M+P+  +W +LL AC+ H 
Sbjct: 423 FRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHG 482

Query: 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           NV LAE   + L++++ ++   Y+LLSNIYA AG WE   RIR ++  + +KK  G S I
Sbjct: 483 NVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSI 542

Query: 551 EIDGNIKEFVSGEIFDVQSEEL 572
           E+D  + EFV G+ F  Q+ E+
Sbjct: 543 EVDSVVFEFVVGDKFHPQNREI 564


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/601 (35%), Positives = 338/601 (56%), Gaps = 41/601 (6%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERLFNQ 71
           +P +SLL   KT   +  I AQ+    L    + LS+L+   + SP+   +  A  +F  
Sbjct: 3   HPSLSLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFET 62

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           I +PN  + NTM RG+  SS+P  AL  YV M   GLL + YT+PF+LK+C       EG
Sbjct: 63  IQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREG 122

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            +IHG V+K+G+  D++V   LI MY + G +  AR VF+ S  +D+VS+  ++ G+   
Sbjct: 123 QQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASK 182

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI------------- 238
           G +  A+++FDE+P KD +SW+ MI GY +   +  +  +  E M               
Sbjct: 183 GYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVV 242

Query: 239 ------------KDLISW-------------NSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
                       + + SW             N++ID Y K G++  A  LF  +  ++V 
Sbjct: 243 SACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVI 302

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
           SW+ +I GY      KEAL LF+EML  G  P+ ++++  + ACA +GA+++G+WIHV++
Sbjct: 303 SWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYI 362

Query: 334 KR--SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391
            +    +      +T+LIDMY KCG ++ A+++F S+  +++ S+N MI G  M+G    
Sbjct: 363 NKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANA 422

Query: 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
           A   F++M    I  DD+ F+G+L ACSHSG+   G  IF+SMK    I PKLEHY C++
Sbjct: 423 AFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMI 482

Query: 452 DLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511
           DLL  +G  ++A  ++ +M M+P+  +W +LL AC+ + NV L E   + L++++  + G
Sbjct: 483 DLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPG 542

Query: 512 LYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEE 571
            YVLLSNIYA AG W    +IR ++  + +KK  G S IEID  + EF+ G+ F  ++ E
Sbjct: 543 SYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNRE 602

Query: 572 L 572
           +
Sbjct: 603 I 603


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/589 (37%), Positives = 328/589 (55%), Gaps = 43/589 (7%)

Query: 4   LAAAKFSLKNPLVS---------LLQISKTTT--HILQILAQLTTNDLITEPFTLSQLLM 52
           LA+  FS +N   S         LL    +T+  H+ Q+ A         + +    L+ 
Sbjct: 11  LASKDFSTENKFTSQLSQKTILDLLNTKSSTSLHHLKQVHAVALRTGHFQDHYVSGTLVK 70

Query: 53  SLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDN 112
              +P+  N++ A ++F  +  PN ++ N +I+G  Q++ P KA+  Y  M       + 
Sbjct: 71  CYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNK 130

Query: 113 YTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG 172
           +TYP + KAC       EG ++H  V+K G   DV + +  I MY               
Sbjct: 131 FTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYG-------------- 176

Query: 173 SEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARIL 232
                              GE+  AR +  E    D I ++ MIDGY K  G++ +A+ L
Sbjct: 177 -----------------SFGEVEGARRMLGEDGNSDVICFNAMIDGYLKC-GEVEAAKEL 218

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
           F  M  K++ SWN M+ G AK G +  A++LFNEM E+N  SWS MIDGY + G  KEAL
Sbjct: 219 FWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEAL 278

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            +F  M  + +RP    +   ++ACA +GALD G+WIH ++  +  + D ++ TAL+DMY
Sbjct: 279 EVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMY 338

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCG LD A  +F  M KK V ++N MI GLGM+G  E+A++ F +M+ +    + +  L
Sbjct: 339 AKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLL 398

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
           GVL AC+HSG+  EG RIF SM+   GIEP +EHY C+VDLL RAG L +A  ++ SMPM
Sbjct: 399 GVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPM 458

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           +P+ A+WG LL ACR H +V L E V + L+EL+  + G Y LLSNIYA AG W+    +
Sbjct: 459 EPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANV 518

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
           RK+M++R +K  TG S+I+ DG + EF  G+    Q + + L++++ +K
Sbjct: 519 RKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIK 567


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/584 (36%), Positives = 335/584 (57%), Gaps = 43/584 (7%)

Query: 31  ILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           I AQ+    L    + LS+L+   + SP+   +  A  +F  I +PN  + NTM RG+  
Sbjct: 9   IHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 68

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
           SS+P  AL  YV M   GLL ++YT+PF+LK+C       EG +IHG V+K+G   D++V
Sbjct: 69  SSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYV 128

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA 209
              LI MY + G +  A  VF+ S  +D+VS+  +++G+   G +  A+++FDE+P KD 
Sbjct: 129 HTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDV 188

Query: 210 ISWSIMIDGYRKKKGDISSARILFEHM------PIKDLI--------------------S 243
           +SW+ MI GY  + G+   A  LF+ M      P +  +                    S
Sbjct: 189 VSWNAMISGY-AETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHS 247

Query: 244 W-------------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
           W             N++ID Y+K G+L  A  LF  +P ++V SW+ +I GY      KE
Sbjct: 248 WIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKE 307

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR--SRITMDMIVQTAL 348
           AL LF+EML  G  P+ ++++  + ACA +GA+D+G+WIHV++ +    +     ++T+L
Sbjct: 308 ALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSL 367

Query: 349 IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD 408
           IDMY KCG ++ A ++F S+  K++ S+N MI G  M+G  + +   F++M   GI  DD
Sbjct: 368 IDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDD 427

Query: 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468
           + F+G+L ACSHSG+   G  IF+SM +   + PKLEHY C++DLL  +G  ++A  ++ 
Sbjct: 428 ITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMIN 487

Query: 469 SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528
           +M M+P+  +W +LL AC+ H NV L E   + L++++ ++ G YVLLSNIYA AG W  
Sbjct: 488 TMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNE 547

Query: 529 ALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
               R ++  + +KK  G S IEID  + EF+ G+ F  ++ E+
Sbjct: 548 VANTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREI 591


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 232/628 (36%), Positives = 359/628 (57%), Gaps = 53/628 (8%)

Query: 10  SLKN-PLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAER 67
           S++N P +SLL   KT   +  I AQ+    L    + LS+L+   + SP+   +  A  
Sbjct: 30  SIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAIS 89

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           +F  I +PN  + NTM RG+  SS+P  AL  YV M   GLL ++YT+PFVLK+C     
Sbjct: 90  VFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKA 149

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
             EG +IHG V+K+G   D++V   LI MY + G +  A  VF+ S  +D+VS+  +++G
Sbjct: 150 FKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKG 209

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFE------------- 234
           +   G +  A+++FDE+P KD +SW+ MI GY  + G+   A  LF+             
Sbjct: 210 YASRGYIENAQKLFDEIPVKDVVSWNAMISGY-AETGNYKEALELFKDMMKTNVRPDEST 268

Query: 235 --------------------HMPIKD------LISWNSMIDGYAKIGDLVAAQQLFNEMP 268
                               H+ I D      L   N++ID Y+K G+L  A  LF  +P
Sbjct: 269 MVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLP 328

Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328
            ++V SW+ +I GY      KEAL LF+EML  G  P+ ++++  + ACA +GA+D+G+W
Sbjct: 329 YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 388

Query: 329 IHVFM-KRSR-ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
           IHV++ KR + +T    ++T+LIDMY KCG ++ A ++F S+  K++ S+N MI G  M+
Sbjct: 389 IHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMH 448

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
           G  + +   F++M   GI  DD+ F+G+L ACSHSG+   G  IF++M +   + PKLEH
Sbjct: 449 GRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEH 508

Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506
           Y C++DLL  +G  ++A  ++  M M+P+  +W +LL AC+ H NV L E   E L++++
Sbjct: 509 YGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIE 568

Query: 507 ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFD 566
            ++ G YVLLSNIYA AG W    + R ++  + +KK  G S IEID  + EF+ G+ F 
Sbjct: 569 PENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFH 628

Query: 567 VQS-------EELELVIQS--FVKTTIE 585
            ++       EE+E++++   FV  T E
Sbjct: 629 PRNREIYGMLEEMEVLLEKAGFVPDTSE 656


>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Brachypodium distachyon]
          Length = 532

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/549 (37%), Positives = 319/549 (58%), Gaps = 40/549 (7%)

Query: 18  LLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNT 77
           L +  ++   I Q+ A +     +++P  L +LL +        +  A  +F+QI +P+ 
Sbjct: 14  LWRRCRSLRQIKQVHALMVLRGFLSDPSALRELLFASAVAVRGAIAHAYLVFDQIPRPDL 73

Query: 78  YMHNTMIRGYTQSSNPQKALSFYVNMKRKG----LLVDNYTYPFVLKACGVLMGLVEGTE 133
           +M+NT+IRG   ++ P+ A+S Y  M R+G    +  D  T+PFVL+AC  +     G +
Sbjct: 74  FMYNTLIRGAAHTAAPRDAVSLYARMARRGSCGGVRPDKITFPFVLRACTAMGAGGTGAQ 133

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           +H  VVK G   D FV N LIGM++                                CGE
Sbjct: 134 VHAHVVKAGCESDAFVRNALIGMHA-------------------------------SCGE 162

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAK 253
           +G A  +FD   ++DA++WS MI G   ++GDI +AR LF+  P+KD +SWN MI  YAK
Sbjct: 163 LGVASALFDGRAREDAVAWSAMITGC-ARRGDIVAARKLFDECPVKDHVSWNVMITAYAK 221

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313
            G++  A+ LFN +PER+V SW+ MI G+ + G+   A+ LF +M   G +PDV++++  
Sbjct: 222 RGEMAPARVLFNRIPERDVVSWNAMISGHVRCGSHVYAMELFEQMQRMGQKPDVVTMLSL 281

Query: 314 ISACAQVGALDLGKWIHVFMKRS--RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
           +SACA  G +D+G+ +H  +     R    +I+  ALIDMY KCGS+  A ++F+ M  K
Sbjct: 282 LSACADSGDIDVGRRLHSSLSEMFLRTGFTVILGNALIDMYAKCGSMKSALQVFWVMRDK 341

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           +V ++N +I GL ++G   E++  F +M  E +  D++ F+ VLIACSH G+  +G   F
Sbjct: 342 DVSTWNSIIGGLALHGHVLESIDVFKKMLKEKVRPDEITFVAVLIACSHGGMVDKGREYF 401

Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN 491
             M+ H  IEP ++HY C+VD+L RAG L++A   +++M ++PN  +W TLL ACR H  
Sbjct: 402 NLMQHHYRIEPNVKHYGCMVDMLGRAGLLKEAFEFIDTMKVEPNSVIWRTLLGACRVHGE 461

Query: 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
           + LAE     L++ + D+ G YVLLSNIYA AG W  + ++RK+M    + K+ GR+V  
Sbjct: 462 IELAEHANRQLLKARNDESGDYVLLSNIYASAGEWSESEKMRKLMDDSGVNKQAGRTV-- 519

Query: 552 IDGNIKEFV 560
           +DG+ K+ +
Sbjct: 520 VDGSAKDLM 528


>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 600

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/553 (37%), Positives = 334/553 (60%), Gaps = 11/553 (1%)

Query: 27  HILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPN--TYMHNTMI 84
           H+ ++ AQL  + L  +P   S+LL S      L   +   +F     P+  T++ NT++
Sbjct: 39  HLQELHAQLLKHGLHLDPVAASKLLSSYALHRRLPASRG--VFASFPNPHATTFLPNTLL 96

Query: 85  RGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFL 144
           R Y  ++ P++A++ +  M  +    D++TY F++KA     G+     +H  VVK+G +
Sbjct: 97  RAYALNALPREAVAVFSAMPHR----DSFTYSFLIKALSS-AGVAPLRAVHSHVVKLGSI 151

Query: 145 CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM 204
            D +V N LI  YSK G    A  VFE    +D+VSWN  +   V  GE+  AR +FDEM
Sbjct: 152 EDTYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFDEM 211

Query: 205 PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
            +KD +SW+ ++DGY  K GD+  A  LF+ MP ++++SW++++ GY K GD+  A+ +F
Sbjct: 212 LEKDTVSWNTLLDGY-TKAGDVEEAFKLFQCMPERNVVSWSTVVSGYCKKGDMEMARVIF 270

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
           ++MP +N+ +W+IM+   AQ+G  +EA  LF +M    V  DV +V+  ++ACA+ G+L 
Sbjct: 271 DKMPTKNLVTWTIMVSACAQNGLVEEAGKLFTQMKEASVELDVAAVVSILAACAESGSLA 330

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS-MTKKNVISYNVMIAGL 383
           LGK IH +++  ++     V  ALIDM+ KCG ++ A  +F + + +K+ +S+N +I G 
Sbjct: 331 LGKRIHRYVRTRQLGRSTHVCNALIDMFCKCGCINRADYVFDTEIVEKDSVSWNTIIGGF 390

Query: 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443
            M+G G++AL  FAQM+ +G   D +  + VL AC+H G   EG R F +M+R  G+ P+
Sbjct: 391 AMHGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMGFVEEGRRYFANMERDYGVVPQ 450

Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLV 503
           +EHY C++DLL R G +++A+++++SMP  PN  +WG+LL ACR H+NV  AE+ V  L 
Sbjct: 451 IEHYGCMIDLLGRGGLIKEAVDLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNELS 510

Query: 504 ELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           +L+  + G Y +LS+IYA+AG W    + R  M+    +K +G S IE+D    EF  G+
Sbjct: 511 KLQPSNAGNYAVLSSIYAEAGKWSDMAKARMQMKGTGSQKSSGSSWIELDEAFHEFTVGD 570

Query: 564 IFDVQSEELELVI 576
                S+++  ++
Sbjct: 571 RKHPDSDQISEMV 583


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/570 (37%), Positives = 343/570 (60%), Gaps = 14/570 (2%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           +KN L+      K   HI   L +L  ++   + + L+++L    S N  N + + R+ +
Sbjct: 12  IKNRLIQGFSCLKHLKHIHAALLRLGLDE---DTYLLNKVLR--FSFNFGNTNYSFRILD 66

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
           Q  +PN ++ NTMIRG   +   Q+++  Y +M+++GL  D++T+PFVLKAC  ++    
Sbjct: 67  QTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSEL 126

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G ++H  VVK G   D FV   LI +Y+KCG +  A  VF+    K+  SW   + G+V 
Sbjct: 127 GVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVG 186

Query: 191 CGEMGKAREVFDEMPQ----KDAISWSIMIDGYRKKKGDISSARILFEHMP----IKDLI 242
            G+  +A ++F  + +     D+ S   ++    K+ GD+ S   + E++     ++++ 
Sbjct: 187 VGKCREAIDMFRRLLEMGLRPDSFSLVEVLSAC-KRTGDLRSGEWIDEYITENGMVRNVF 245

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
              +++D Y K G++  A+ +F+ M E+N+ SWS MI GYA +G PKEAL LF +ML +G
Sbjct: 246 VATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEG 305

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           ++PD  +++G + +CA++GAL+LG W    +  +    + ++ TALIDMY KCG +D A 
Sbjct: 306 LKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAW 365

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
            +F  M KK+ + +N  I+GL M+G  ++AL  F QME  GI  D   F+G+L AC+H+G
Sbjct: 366 EVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAG 425

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
           L  EG R F SM+    + P++EHY C+VDLL RAG L++A  +++SMPM+ N  +WG L
Sbjct: 426 LVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGAL 485

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
           L  CR H++  L EVV++ L+ L+    G YVLLSNIYA +  WE A +IR +M +R +K
Sbjct: 486 LGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVK 545

Query: 543 KETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           K  G S IE+DG + +F+ G+     SE++
Sbjct: 546 KIPGYSWIEVDGVVHQFLVGDTSHPLSEKI 575


>gi|147798551|emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]
          Length = 690

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/589 (37%), Positives = 335/589 (56%), Gaps = 52/589 (8%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAER-LFNQ 71
           +P + LL  SKT   + QI ++L T   I  P   ++++++ +S +   + +  R LF  
Sbjct: 71  HPTLILLPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLFMS 130

Query: 72  IY-------QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
            +       Q N ++ N +I+ ++   +P +A   +  M   G+ VD +++  VLKAC  
Sbjct: 131 RHFGRKHRKQDNPFLWNAIIKSFSHGEDPXEAFXIFNLMLENGVCVDKFSFSLVLKACSR 190

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L  + EG +IHG +  M    DVF+ N L+ +Y +CG +G AR +F+    +D VS+N +
Sbjct: 191 LGLIKEGMQIHGLLGXMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMXRDSVSFNSM 250

Query: 185 LRGFVECGEMGKAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLI 242
           + G+V+ G +  ARE+FD MP  QK+ ISW+ MI GY + +  +  A  LFE MP +DLI
Sbjct: 251 IDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLI 310

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA------------------- 283
           SWNSMIDG  K G +  A  LFN MP+R+V SW+ M+DGYA                   
Sbjct: 311 SWNSMIDGCVKCGKMENAHHLFNXMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERD 370

Query: 284 ------------QHGNPKEALYLFREMLC-QGVRPDVISVMGAISACAQVGALDLGKWIH 330
                       Q+G   EAL  F +ML  + + P   +++  +SA AQ+G  D G  +H
Sbjct: 371 VISCNAMMAGYVQNGXLMEALXFFHDMLSXKELFPXNATLLITLSAIAQLGHFDEGVALH 430

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
            +++ +  ++   +  ALIDMY KCGS+D A           +  +N +J GL ++G GE
Sbjct: 431 CYIEDNGFSLSEKLGXALIDMYAKCGSIDNAL----------IDHWNAIJXGLAIHGLGE 480

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
            A + F +ME   +  BD+ F+GVL AC+H+GL  EG   F  M+    +EPKL+HY C+
Sbjct: 481 VAFELFMEMEKLFVKPBDITFIGVLNACNHAGLVKEGLMXFXLMRXVHKVEPKLQHYGCM 540

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           VD+L RAG +E+    VE MP++PN  +W TLL ACRNH+N T+ E V + L+ + + + 
Sbjct: 541 VDILGRAGHVEEXKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYNP 600

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEF 559
             YVLLSNIYA  GMW    RIR MM++R +KK  G S IE++GN+ EF
Sbjct: 601 SSYVLLSNIYAXFGMWNDVYRIRMMMKQRDLKKIPGCSQIELEGNVHEF 649


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/557 (36%), Positives = 328/557 (58%), Gaps = 38/557 (6%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           L+   + L+  S +T  + QI  QL   ++ +    ++Q + S +S N++  D A  +F 
Sbjct: 41  LETHFIDLIHASNSTHKLRQIHGQLYRCNVFSSSRVVTQFISSCSSLNSV--DYAISIFQ 98

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
           +    N+Y+ N +IRG  ++S  + ++SF+V M +  +  D  T+PFVLK+   L     
Sbjct: 99  RFELKNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGV 158

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G  +H  ++K G   D FV   L+ MY                               V+
Sbjct: 159 GRALHCGILKFGLEFDSFVRVSLVDMY-------------------------------VK 187

Query: 191 CGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNS 246
             E+G A +VFDE P+       + W+++I GY  + GD+  A  LF+ MP KD  SWNS
Sbjct: 188 VEELGSALKVFDESPESVKNGSVLIWNVLIHGY-CRMGDLVKATELFDSMPKKDTGSWNS 246

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           +I+G+ K+GD+  A++LF +MPE+NV SW+ M++G++Q+G+P++AL  F  ML +G RP+
Sbjct: 247 LINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPN 306

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
             +++ A+SACA++GALD G  IH ++  +   +++++ TAL+DMY KCG+++ A ++F+
Sbjct: 307 DYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFH 366

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
              +K ++ ++VMI G  ++G   +AL+ F  M+  G   D ++FL VL ACSHSG   E
Sbjct: 367 ETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNE 426

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G + F +M+R   IEP ++HY+ +VD+L RAG L++AL  + +MP+ P+  +WG L  AC
Sbjct: 427 GLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFCAC 486

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           R H+NV +AE+  + L++L+    G YV LSN YA  G W+ A R+R  MR     K+ G
Sbjct: 487 RTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGAHKDPG 546

Query: 547 RSVIEIDGNIKEFVSGE 563
            S IE+D  +  FV+G+
Sbjct: 547 WSFIEVDHKLHRFVAGD 563


>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
          Length = 587

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/573 (37%), Positives = 325/573 (56%), Gaps = 43/573 (7%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMH--------- 80
           QI A+L     I      ++++++  +     + +  R   Q Y   ++ H         
Sbjct: 8   QIHARLIKTGFIQNSNLTTRIVLAFAASRRPYLAEFARCVFQNYHSCSFAHGEVEDPFLW 67

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N +I+ ++   +P++AL ++  M   G+ VD ++   VLKAC  L  + EG +IHG + K
Sbjct: 68  NAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQIHGFLRK 127

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
            G   D+F+ N LIG+Y KCG +G AR +F+    +D VS+N ++ G+V+CG +G ARE+
Sbjct: 128 TGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSAREL 187

Query: 201 FDEMPQ--KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLV 258
           FD MP+  K+ ISW+ MI GY +    ++ A  LF  MP KDLISWNS+IDGY K G + 
Sbjct: 188 FDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHGRME 247

Query: 259 AAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV--------------- 303
            A+ LF  MP R+V +W+ MIDGYA+ G   +A  LF +M  + V               
Sbjct: 248 DAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKY 307

Query: 304 -----------------RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
                             PD  +++  +SA AQ+G L     ++ ++      +   +  
Sbjct: 308 HMEALEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMNKYIVEKSFPLGGKLGV 367

Query: 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK 406
           ALIDM+ KCGS+ +A  +F  +  K++  +N MI GL ++G GE A     Q+E   I  
Sbjct: 368 ALIDMHSKCGSIQQAISVFEGIKNKSIDHWNAMIGGLAIHGHGELAFDMLMQIERCSIKP 427

Query: 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466
           DD+ F+GVL ACSHSGL  EG   F+ M+R   IEP+L+HY C+VD+LSR+G +E A ++
Sbjct: 428 DDITFIGVLNACSHSGLVKEGLLSFELMRRKHKIEPRLQHYGCIVDILSRSGSIELAKHL 487

Query: 467 VESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMW 526
           +E MPM+PN  +W T L+ACRN +   + E+V + L+     +   YVLLSN+YA  GMW
Sbjct: 488 IEDMPMEPNDVIWRTFLIACRNRKEFEIGELVAKHLILQAGYNPSSYVLLSNMYASLGMW 547

Query: 527 EHALRIRKMMRKRKIKKETGRSVIEIDGNIKEF 559
           +   R+R MM++RK+ K  G S IE+DGN+ EF
Sbjct: 548 KDVRRVRMMMKQRKLHKIPGCSWIELDGNVHEF 580


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/559 (39%), Positives = 322/559 (57%), Gaps = 46/559 (8%)

Query: 15  LVSLLQISKTTTHILQILAQL-TTNDLITEPFTLSQLLMSLTSPNTLNMDQ--AERLFNQ 71
            +S LQ  K+   + QI A +  T        T+S  L +L +  +L +D   A  L  Q
Sbjct: 40  FLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCA-QSLPIDPRYALSLLAQ 98

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQ-KALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
           +  PN  ++N +IRG   S+N   + L  Y  M  KG++ DNYT PFVLKAC     + E
Sbjct: 99  LRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVRE 158

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G E+HG+ +KMG   DV+V N L+ MY+                                
Sbjct: 159 GEEVHGQAIKMGLASDVYVSNTLMRMYAV------------------------------- 187

Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR------ILFEHMPIKDLISW 244
           C  +  AR+VFD  PQ+D +SW+ MI GY K    +  AR      I+       D+   
Sbjct: 188 CDVIRSARKVFDTSPQRDLVSWTTMIQGYVK----MGFAREGVGLYIIRNSNVNLDVFVG 243

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           N+++D Y K GD   A+++F EMP +NV SW+ MI G AQ G  KE+LY+FR+M   GV+
Sbjct: 244 NALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVK 303

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           PD ++++  +++CA +G L+LGKW+H ++ R++I  D  +  AL+DMY KCGS+D+A  +
Sbjct: 304 PDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWV 363

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F +M +K+V SY  MI GL M+G G +AL  F++M   GI  D++ F+GVL ACSH GL 
Sbjct: 364 FQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLV 423

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            EG + F+ M     + P+LEHY C+VDLL RAG + +A   + +MP++P+  + G LL 
Sbjct: 424 EEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLG 483

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           AC+ H  V L E V++ + +++    G YVL+SNIY+ A  W  AL++RK M++R ++K 
Sbjct: 484 ACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKT 543

Query: 545 TGRSVIEIDGNIKEFVSGE 563
            G S IE+DG I EF  G+
Sbjct: 544 PGCSSIELDGVIHEFQKGD 562


>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/566 (36%), Positives = 332/566 (58%), Gaps = 38/566 (6%)

Query: 14  PLVSLLQISKTTTHILQILAQL-TTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           P++ ++   KT   +  I A+L   + + +  F +++LL   +       D A ++F++I
Sbjct: 4   PILHIIHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGA--TDYAHKVFDEI 61

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
            QPN Y+  ++I GY ++    +A S ++ M+R+ + V N+T   VLKA   L     G 
Sbjct: 62  TQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQ 121

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
            ++G       +C+                             KD+VSWN+++ G+    
Sbjct: 122 AVYG--FAFDEMCE-----------------------------KDIVSWNMMISGYGNND 150

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA 252
            +  AR+ FD MP+++ +SW+ MI GY  K GD++ A++LF+ MP+KDL SWN M+ GY 
Sbjct: 151 RVDIARKFFDRMPERNVVSWTSMICGY-VKAGDMAEAQVLFDSMPVKDLASWNVMVSGYM 209

Query: 253 KIGDLV-AAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
            IGD    A+ LF++MP +N+ +WS MI GYA++G P +AL LF     Q ++PD   ++
Sbjct: 210 DIGDYTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFIL 269

Query: 312 GAISACAQVGALDLGK-WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
           G ISAC+Q+G +D  +  IH ++  S ++ D+ V T+LIDMY KCGS+++A ++F     
Sbjct: 270 GIISACSQLGIIDAAESIIHNYVGPSLLS-DLRVFTSLIDMYAKCGSIEKALQMFEMAHP 328

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           K+++ Y+ MIA L  +G G +A+  F +M+   I  D + FLGVL AC+H GL  EG + 
Sbjct: 329 KDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKY 388

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
           F+ M    GI+P  +HY+C+VDLL R G LE+A N++ +MP+ P+  +WG LL ACR H 
Sbjct: 389 FKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVHC 448

Query: 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           NV LAEV    L +++ D+ G Y+LLSNIYA AG W    ++R  +R+ +++K  G S I
Sbjct: 449 NVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRGSSWI 508

Query: 551 EIDGNIKEFVSGEIFDVQSEELELVI 576
           E+   + EFV G++    S+ + L++
Sbjct: 509 ELSHVVHEFVMGDMSHTDSDSISLIL 534


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/559 (38%), Positives = 327/559 (58%), Gaps = 38/559 (6%)

Query: 17  SLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLM--SLTSPNTLNMDQAERLFNQIYQ 74
           SLL   ++  ++ Q+ A +    L T+P    +LL+  +++ P+ L  D A RLF     
Sbjct: 10  SLLTNCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDAL--DYARRLFLHFPN 67

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK-GLLVDNYTYPFVLKACGVLMGLVEGTE 133
           P+ +MHNT+IRG  +S  PQ +L  +V M+R+    +D++++ F+LKA      L  G +
Sbjct: 68  PDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQ 127

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           +H + +  G    +FV   L+ MYS                               ECG 
Sbjct: 128 LHCQAIVHGLDTHLFVGTTLVSMYS-------------------------------ECGF 156

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAK 253
           +  A++VF+EM + + ++W+ ++    +  GD+  A ++F  MP ++L SWN M+ GY K
Sbjct: 157 VAFAKKVFEEMFEPNVVAWNAVVTACFRC-GDVKGADMMFNRMPFRNLTSWNVMLAGYTK 215

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313
            G+L  A++LF EMP ++  SWS MI G+A +G   EA   FRE+   G+RP+ +S+ GA
Sbjct: 216 AGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGA 275

Query: 314 ISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKN 372
           +SACA  GA++ GK +H F+++S     + V  AL+D Y KCG++  AR +F  M  K++
Sbjct: 276 LSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRS 335

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
           ++S+  MIAGL M+G+GEEA++ F +ME  GI  D + F+ +L ACSH+GL  +GY  F 
Sbjct: 336 IVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFY 395

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV 492
            MK    IEP +EHY C+VDL  RAG+L++A   +  MP+ P   +W TLL AC  H NV
Sbjct: 396 KMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNV 455

Query: 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
            LAE V E L EL  ++ G +VLLSNIYA AG W+    +R+ M  +++ K  G S+IE+
Sbjct: 456 KLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEV 515

Query: 553 DGNIKEFVSGEIFDVQSEE 571
           D  +  FV+GE+ +  +EE
Sbjct: 516 DKIMYSFVAGEVQNSITEE 534


>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
 gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/504 (40%), Positives = 305/504 (60%), Gaps = 18/504 (3%)

Query: 62  MDQAERLFNQIYQPNT---YMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFV 118
           MD +  +F+Q+   ++    + N MIRGY  +   Q+ +  +  M ++GL   N+TYP+V
Sbjct: 1   MDYSNLIFSQMGHDSSAEIVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYV 60

Query: 119 LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMY------------SKCGHMGCA 166
           + +C  L     G  +H E+VK GF     V N L  MY            S C  +  A
Sbjct: 61  INSCCELEWYGRGKRVHCEIVKSGFESSYAVANSLFNMYLKMPASFDVGLASNC-KLDYA 119

Query: 167 RSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDI 226
           R +F+   ++ +  WN ++  +V  G++  ARE+FD MP++D +SW+ MI GY  K G +
Sbjct: 120 RKIFDDMCVRPVELWNQMIGKYVNIGDVKSARELFDIMPERDIVSWNSMILGY-AKGGKV 178

Query: 227 SSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
           ++AR LFE MP K++ISW SMI  YA   DL  A+  F  MP+RNV SW+ MI  YA+HG
Sbjct: 179 ANARGLFEKMPEKNVISWTSMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKHG 238

Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
              E+L LF +M  +GV PD  + +  +SAC+ +G L+ GK+IH ++       +++V T
Sbjct: 239 KFVESLNLFVQMQSEGVTPDGYTFVSVLSACSNLGDLEFGKYIH-YLSGDLSQSEVMVGT 297

Query: 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK 406
           AL +MY +CG +D+A  +F  + K++V  +NV+I  L ++G  EEA+K F  M   G+  
Sbjct: 298 ALTEMYAQCGDVDKAFAVFIKIGKRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLKP 357

Query: 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466
           +D  F   L ACSH GL  EG+ IF SM++   I PK+ HY CL+D+L R G+LE+A+ +
Sbjct: 358 NDFTFTSALFACSHGGLVEEGHIIFNSMEKDYKIIPKITHYGCLIDMLCRNGQLEEAMLL 417

Query: 467 VESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMW 526
           VE MP +P++A+WG LL  CR   ++ LAE VVE   E++ ++ G+YVLLSNI+A AG W
Sbjct: 418 VEDMPFQPDVAIWGALLGGCRVTGDLKLAEKVVEKATEMETNESGVYVLLSNIHASAGQW 477

Query: 527 EHALRIRKMMRKRKIKKETGRSVI 550
             A   RK M ++KI K+TG SV+
Sbjct: 478 IEAADARKKMDEKKISKKTGSSVV 501



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 111/249 (44%), Gaps = 22/249 (8%)

Query: 58  NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF 117
           +T +++ A   F  + Q N    N+MI  Y +     ++L+ +V M+ +G+  D YT+  
Sbjct: 205 DTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKFVESLNLFVQMQSEGVTPDGYTFVS 264

Query: 118 VLKACGVLMGLVEGTEIH---GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174
           VL AC  L  L  G  IH   G++ +     +V V   L  MY++CG +  A +VF    
Sbjct: 265 VLSACSNLGDLEFGKYIHYLSGDLSQ----SEVMVGTALTEMYAQCGDVDKAFAVFIKIG 320

Query: 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEM------PQKDAISWSIMIDGYRKKKGDISS 228
            +D+  WN++++     G   +A ++F  M      P     + ++    +    G +  
Sbjct: 321 KRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLKPNDFTFTSALFACSH---GGLVEE 377

Query: 229 ARILFEHMP-----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGY 282
             I+F  M      I  +  +  +ID   + G L  A  L  +MP + +V  W  ++ G 
Sbjct: 378 GHIIFNSMEKDYKIIPKITHYGCLIDMLCRNGQLEEAMLLVEDMPFQPDVAIWGALLGGC 437

Query: 283 AQHGNPKEA 291
              G+ K A
Sbjct: 438 RVTGDLKLA 446


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/525 (36%), Positives = 323/525 (61%), Gaps = 9/525 (1%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A ++F+++ + +    N +I GY+Q+  P +AL+ +  M+  G+  ++ T   V+ 
Sbjct: 170 SLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMP 229

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C  L+ L +G +IH   ++ G   DV VVNGL+ MY+KCG++  A  +FE   I+D+ S
Sbjct: 230 VCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVAS 289

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDG--------YRKKKGDISSARIL 232
           WN ++ G+    +  +A   F+ M  +     SI +          +  ++G       +
Sbjct: 290 WNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAI 349

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
                  D++  N++++ YAK G++ +A +LF  MP++NV +W+ +I GY+QHG+P EAL
Sbjct: 350 RSGFESNDVVG-NALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEAL 408

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            LF EM  QG++PD  +++  + ACA   AL+ GK IH +  RS    +++V T L+D+Y
Sbjct: 409 ALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIY 468

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCG+++ A+++F  M +++V+S+  MI   G++G GE+AL  F++M+  G   D + F 
Sbjct: 469 AKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFT 528

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            +L ACSH+GL  +G + FQ MK   G+ PKLEHY+CLVDLL RAG L++A  I+++M +
Sbjct: 529 AILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSL 588

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           +P+  +WG LL ACR H N+ L E   + L EL  D+ G YVLLSNIYA+A  WE   ++
Sbjct: 589 EPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKL 648

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           RKMM+++ +KK+ G SV+ +  +++ F+ G+    QSE++  +++
Sbjct: 649 RKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLE 693



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 146/489 (29%), Positives = 240/489 (49%), Gaps = 35/489 (7%)

Query: 20  QISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYM 79
           QIS   TH+  I   +        P   S ++  L         +     NQ     T +
Sbjct: 22  QISFHHTHLHSISYHVCFYFYGPSPLPTSTVVAQLRRNKVKTTREVSACANQTQFTQTDI 81

Query: 80  HNT------MIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
            N        I GY ++    KAL  Y  M+R G+  D   +  V+KACG    L  G +
Sbjct: 82  RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRK 141

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           +H +++  GF  DV V   L  MY+KCG +  AR VF+    +D+VSWN ++ G+ + G+
Sbjct: 142 VHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQ 201

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI--------------- 238
             +A  +F EM           ++G +     + S   +  H+                 
Sbjct: 202 PYEALALFSEM----------QVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSG 251

Query: 239 --KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
              D++  N +++ YAK G++  A +LF  MP R+V SW+ +I GY+ +    EAL  F 
Sbjct: 252 IESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFN 311

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
            M  +G++P+ I+++  + ACA + AL+ G+ IH +  RS    + +V  AL++MY KCG
Sbjct: 312 RMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCG 371

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
           +++ A ++F  M KKNV+++N +I+G   +G   EAL  F +M+ +GI  D    + VL 
Sbjct: 372 NVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLP 431

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
           AC+H     +G +I     R  G E  +   + LVD+ ++ G +  A  + E MP + ++
Sbjct: 432 ACAHFLALEQGKQIHGYTIR-SGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP-EQDV 489

Query: 477 ALWGTLLLA 485
             W T++LA
Sbjct: 490 VSWTTMILA 498



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 177/338 (52%), Gaps = 17/338 (5%)

Query: 164 GCA-RSVFEGSEIKD-LVSWNLVLRGFVECGEMGKAREVFDEM------PQKDAISWSIM 215
            CA ++ F  ++I++  V W   + G+V+ G   KA  ++ +M      P K      I 
Sbjct: 69  ACANQTQFTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIK 128

Query: 216 IDGYRKKKGDISSARILFEHMPIK----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271
             G    + D+ + R + E +  +    D+I   ++   Y K G L  A+Q+F+ MP+R+
Sbjct: 129 ACG---SQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRD 185

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV 331
           V SW+ +I GY+Q+G P EAL LF EM   G++P+  +++  +  CA + AL+ GK IH 
Sbjct: 186 VVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHC 245

Query: 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391
           +  RS I  D++V   L++MY KCG+++ A ++F  M  ++V S+N +I G  +N    E
Sbjct: 246 YAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHE 305

Query: 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
           AL  F +M+  GI  + +  + VL AC+H     +G +I     R  G E      + LV
Sbjct: 306 ALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIR-SGFESNDVVGNALV 364

Query: 452 DLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
           ++ ++ G +  A  + E MP K N+  W  ++     H
Sbjct: 365 NMYAKCGNVNSAYKLFERMP-KKNVVAWNAIISGYSQH 401


>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
 gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
          Length = 546

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/526 (38%), Positives = 315/526 (59%), Gaps = 34/526 (6%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           QI A L      +    L +L+ +     +  ++ A ++F QI +P+ +M NTM+RG +Q
Sbjct: 31  QIHATLIIKGFNSNRAALRELIFAGAMTISGAINYAHQVFAQITEPDIFMWNTMMRGSSQ 90

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
           S NP K +  Y  M+ +G+  D +T+ F+LK C  L     G  +HG+V+K GF  + FV
Sbjct: 91  SKNPSKVVLLYTQMENRGVKPDKFTFSFLLKGCTRLEWRKTGFCVHGKVLKYGFEVNSFV 150

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA 209
            N LI  +S CG               DLV                 AR +F ++P++  
Sbjct: 151 RNTLIYFHSNCG---------------DLVI----------------ARSIFYDLPERSV 179

Query: 210 ISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269
           +SWS +  GY  ++G++  AR +F+ MP+KDL+SWN MI GY K G++  A+ LF+E PE
Sbjct: 180 VSWSALTAGY-ARRGELGVARQIFDEMPVKDLVSWNVMITGYVKNGEMENARTLFDEAPE 238

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329
           ++V +W+ MI GY   G  ++AL +F EM   G  PD ++++  +SACA +G L +G+ +
Sbjct: 239 KDVVTWNTMIAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKL 298

Query: 330 HVFMKR-SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
           H  +   +R  + +++  AL+DMY KCGS++ A ++F  M +K+V ++N +I GL  +G 
Sbjct: 299 HCSISEMTRGDLSVLLGNALVDMYAKCGSIEIALQVFKKMREKDVTTWNSVIGGLAFHGH 358

Query: 389 GEEALKCFAQMET-EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
            EE++K FA+M+  + I  +++ F+GV++ACSH+G   EG R F+ M+    IEP + H+
Sbjct: 359 AEESIKLFAEMQALKNIKPNEITFVGVIVACSHAGNVEEGRRYFKLMRERYDIEPNMIHH 418

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
            C+VDLL RAG L +A  ++  M ++PN  +W TLL ACR H NV L  +  E L++L+ 
Sbjct: 419 GCMVDLLGRAGLLSEAFELIAKMEIEPNAIIWRTLLGACRVHGNVELGRLANERLLKLRR 478

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEID 553
           D+ G YVLLSNIYA AG W+ A  +RK+M    ++KE GRS+IE D
Sbjct: 479 DESGDYVLLSNIYASAGEWDGAEEVRKLMDDGGVRKEAGRSLIEAD 524


>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
          Length = 537

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/544 (37%), Positives = 311/544 (57%), Gaps = 41/544 (7%)

Query: 17  SLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPN 76
           +L +  ++   I Q+ A +     +++   L +L+ +           A  +F++I  P+
Sbjct: 13  ALWRRCRSLRQIKQVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFDRIPHPD 72

Query: 77  TYMHNTMIRGYTQSSNPQKALSFYVNMKRKG-------LLVDNYTYPFVLKACGVLMGLV 129
            +M+NT+IRG   S  P+ A+S Y  M R         L  D  T+PFVL+AC  +    
Sbjct: 73  RFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGE 132

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
            G ++H  VVK G   D FV N LIGM++  G +G A ++F+G                 
Sbjct: 133 TGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDG----------------- 175

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMID 249
                 +ARE        DA++WS MI G+  ++GDI +AR LF+  P+KDL+SWN MI 
Sbjct: 176 ------EARE--------DAVAWSAMISGF-ARRGDIGAARELFDESPVKDLVSWNVMIT 220

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
            YAK+GD+  A++LF+  P+R+V SW+ MI GY + G+ K+A+ LF +M   G +PD ++
Sbjct: 221 AYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVT 280

Query: 310 VMGAISACAQVGALDLGKWIHVFM--KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           ++  +SACA  G LD G+ +H F+  + SRI     +  ALIDMY KCGS+  A  +F+ 
Sbjct: 281 MLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWL 340

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           M  KNV ++N +I GL ++G   E++  F +M    +  D++ F+ VL ACSH G+  +G
Sbjct: 341 MQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKG 400

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
           +  F  M++   IEP ++HY C+VD+LSR G L++A   + +M ++PN  +W TLL ACR
Sbjct: 401 HEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACR 460

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
            H  + LAE     L++ ++D  G +VLLSNIYA  G W  +  +RK+M    + KE GR
Sbjct: 461 IHGEIELAEHANRELLKARSDASGDFVLLSNIYASVGEWPGSENMRKLMDDSGVNKEAGR 520

Query: 548 SVIE 551
           +VI+
Sbjct: 521 AVID 524


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/564 (38%), Positives = 329/564 (58%), Gaps = 42/564 (7%)

Query: 7   AKFSLKNPLVSLLQISKTTT--HILQILAQLTTNDLITEPFTLSQLLMSLTSPNT---LN 61
           +K S K  ++ LL    TT+  H+ Q  A +     + + +    L+ S  + +T   L+
Sbjct: 28  SKLSHK-AILHLLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLS 86

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
            + + R+F+ + +PN ++ N MI+   +++ P KA+  Y  M       + YTYP VLKA
Sbjct: 87  FESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKA 146

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C     + EG ++H  +VK G   D  +++  I MY+  G +  AR + +          
Sbjct: 147 CSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILD---------- 196

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
                               D+  + DA+ W+ MIDGY +  G++ +AR LFE MP + +
Sbjct: 197 --------------------DKGGEVDAVCWNAMIDGYLRF-GEVEAARELFEGMPDRSM 235

Query: 242 IS-WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
           IS WN+MI G+++ G +  A++ F+EM ER+  SWS MIDGY Q G   EAL +F +M  
Sbjct: 236 ISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQK 295

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
           + +RP    +   +SACA +GALD G+WIH + KR+ I +D ++ T+L+DMY KCG +D 
Sbjct: 296 EKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDL 355

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           A  +F  M+ K V S+N MI GL M+G  E+A+  F++M+   I  +++ F+GVL AC+H
Sbjct: 356 AWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPNEITFVGVLNACAH 412

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
            GL  +G  IF SM++  G+EP++EHY C+VDLL RAG L +A  +V S+P +P  A+WG
Sbjct: 413 GGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWG 472

Query: 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540
            LL ACR H NV L E V + L+EL+  + G Y LLSNIYA AG WE    +RK+M++R 
Sbjct: 473 ALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERG 532

Query: 541 IKKETGRSVIEID-GNIKEFVSGE 563
           IK   G S+I++  G + +F+ G+
Sbjct: 533 IKTTPGTSIIDLGRGEVHKFIIGD 556


>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
          Length = 584

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/568 (37%), Positives = 322/568 (56%), Gaps = 41/568 (7%)

Query: 33  AQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTY-------MHNTMIR 85
           A+  T   I  P   +++++S ++     + +  R     Y  ++Y       + N +I+
Sbjct: 7   ARXITTGFIKNPNLTTRIVLSFSASRRSYLAEFARCIFHEYHVSSYSVEEDPFLWNAVIK 66

Query: 86  GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC 145
            ++   +P+ AL  +  M    + VD ++   VLKAC  L  +  G ++HG + K G   
Sbjct: 67  SFSHGVDPRNALLLFCLMIENSVSVDKFSISLVLKACSRLGFVDFGMQVHGFLRKTGIYS 126

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D+F+ N LIG+Y KCG +G AR VF+    +D VS+N ++ G+V+CG +  ARE+FD MP
Sbjct: 127 DLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMP 186

Query: 206 --QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQL 263
             +K+ ISW+ MI GY + +  ++ A  LF+ MP KDLISWNS+IDGY K   +  A+ L
Sbjct: 187 REKKNLISWNCMISGYTQSEDGVNVASKLFDEMPEKDLISWNSLIDGYVKHRRIEDAKSL 246

Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV-------------------- 303
           F+ MP ++V +W+ MIDGYA+ G   +A  LF EM  + V                    
Sbjct: 247 FDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQRDVVAYNSMMAGYVQNKYHAEAI 306

Query: 304 ------------RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
                        PD  +++  +SA AQ+G L     IH+++  ++  +   +  ALID 
Sbjct: 307 GIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALIDT 366

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y KCGS+ ++ R+F  +  K++  +N MI GL ++G GE A     Q+E   I  DD+ F
Sbjct: 367 YSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPDDITF 426

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           +GVL ACSHSGL  EG   F+ M+R   IEPKL+HY C+VD+LSR+G +E A N++E MP
Sbjct: 427 IGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAKNLIEEMP 486

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           ++PN  +W T L AC NH+     E+V + L      +   +VLLSN+YA  GMW+   R
Sbjct: 487 IEPNDVIWRTFLTACSNHKEFETGELVAKHLFLQGGYNPSSFVLLSNMYASFGMWKEVRR 546

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEF 559
           +R  M++RK++K  G S IE+DGN+ EF
Sbjct: 547 VRTTMKERKLRKIPGCSWIELDGNVHEF 574


>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
 gi|219886289|gb|ACL53519.1| unknown [Zea mays]
          Length = 537

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/544 (37%), Positives = 311/544 (57%), Gaps = 41/544 (7%)

Query: 17  SLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPN 76
           +L +  ++   I Q+ A +     +++   L +L+ +           A  +F++I  P+
Sbjct: 13  ALWRRCRSLRQIKQVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFDRIPHPD 72

Query: 77  TYMHNTMIRGYTQSSNPQKALSFYVNMKRKG-------LLVDNYTYPFVLKACGVLMGLV 129
            +M+NT+IRG   S  P+ A+S Y  M R         L  D  T+PFVL+AC  +    
Sbjct: 73  RFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGE 132

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
            G ++H  VVK G   D FV N LIGM++  G +G A ++F+G                 
Sbjct: 133 TGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDG----------------- 175

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMID 249
                 +ARE        DA++WS MI G+  ++GDI +AR LF+  P+KDL+SWN MI 
Sbjct: 176 ------EARE--------DAVAWSAMISGF-ARRGDIGAARELFDESPVKDLVSWNVMIT 220

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
            YAK+GD+  A++LF+  P+R+V SW+ MI GY + G+ K+A+ LF +M   G +PD ++
Sbjct: 221 AYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVT 280

Query: 310 VMGAISACAQVGALDLGKWIHVFM--KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           ++  +SACA  G LD G+ +H F+  + SRI     +  ALIDMY KCGS+  A  +F+ 
Sbjct: 281 MLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWL 340

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           M  KNV ++N +I GL ++G   E++  F +M    +  D++ F+ VL ACSH G+  +G
Sbjct: 341 MQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKG 400

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
           +  F  M++   IEP ++HY C+VD+LSR G L++A   + +M ++PN  +W TLL ACR
Sbjct: 401 HEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACR 460

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
            H  + LAE     L++ ++D  G +VLLSNIYA  G W  +  +RK+M    + KE GR
Sbjct: 461 IHGEIELAEHANRELLKARSDASGDFVLLSNIYASVGEWPGSENMRKLMDDSGVNKEAGR 520

Query: 548 SVIE 551
           +VI+
Sbjct: 521 AVID 524


>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
          Length = 567

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/508 (38%), Positives = 306/508 (60%), Gaps = 39/508 (7%)

Query: 77  TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE-GTEIH 135
           T++   +IR    S++P  + + + ++ R GL+ D +T P +L + G L      G ++H
Sbjct: 59  TFLQKILIRASASSASPGLSFAAFSSLLRCGLVPDRFTLPPLLGSAGKLPAFPRTGAQVH 118

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG-SEIKDLVSWNLVLRGFVECGEM 194
            + V+ GFL DVFVVN L+ MY         R VF   + + D+VSWN V+ G+V+CGEM
Sbjct: 119 AQAVRRGFLADVFVVNALLAMYGALRDAASMREVFGSCAGVADVVSWNTVIGGYVKCGEM 178

Query: 195 GKAREVFDEMPQKDAISWSIMIDGYRK--------------------------------K 222
             A+ VFDEMP+++ +SWS M+ GY                                  +
Sbjct: 179 ESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFAR 238

Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
            G +  AR +F+ MP+++L+SWN+M+ GY+   D+  A++LF+ MPE++V SW+ MI GY
Sbjct: 239 HGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGY 298

Query: 283 AQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM- 340
           AQ G  ++ L LFR M  +  V+P+ ++++  +SACA + AL+ G+W+H F+ + ++ + 
Sbjct: 299 AQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLN 358

Query: 341 -DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
            +  +  ALIDMY KCG  D A +IF S+ +KNV ++N +I  L MNG   +++  F QM
Sbjct: 359 NEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQM 418

Query: 400 ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
           +  G   +D+ F+GVL ACSH GL  EG R FQSM   CG++P+++HY C+VD+L RAG 
Sbjct: 419 KRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGL 478

Query: 460 LEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL--VELKADDCGLYVLLS 517
           LE+A  ++ SMPM P++ ++G LL ACR H+   +AE V   +  + L A   G +VL+S
Sbjct: 479 LEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLIS 538

Query: 518 NIYADAGMWEHALRIRKMMRKRKIKKET 545
           +IYA AG W   L  R+++++  I+K T
Sbjct: 539 DIYAAAGKWFDVLEARQVVQRSGIRKWT 566



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 156/364 (42%), Gaps = 85/364 (23%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           M+ A+R+F+++ + N    +TM+ GY  +     A   +  M   G              
Sbjct: 178 MESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGR------------- 224

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
                                   +V   N ++  +++ G +  AR +F+   +++LVSW
Sbjct: 225 ------------------------NVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSW 260

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
           N +LRG+    +M  ARE+FD MP+KD +SW+ MI GY  + G       LF  M  +  
Sbjct: 261 NAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGY-AQAGRYQDTLELFRAMQTESN 319

Query: 242 ISWN------------------------------------------SMIDGYAKIGDLVA 259
           +  N                                          ++ID YAK G    
Sbjct: 320 VQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDI 379

Query: 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
           A ++FN +  +NV +W+ +I   A +GN ++++  F +M   G +P+ I+ +G ++AC+ 
Sbjct: 380 AVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSH 439

Query: 320 VGALDLGKWIHVFMKRS-RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNV 378
            G +D G+     M  +  +  ++     ++DM  + G L+EA  +  SM     ++ +V
Sbjct: 440 GGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMP----MAPDV 495

Query: 379 MIAG 382
           M+ G
Sbjct: 496 MVFG 499



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 91/219 (41%), Gaps = 11/219 (5%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDN-YTYPFVL 119
           +MD A  LF+ + + +      MI GY Q+   Q  L  +  M+ +  +  N  T   VL
Sbjct: 272 DMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVL 331

Query: 120 KACGVLMGLVEGTEIHG--EVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
            AC  L  L EG  +H   +  KM    +  +   LI MY+KCG    A  +F   + K+
Sbjct: 332 SACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKN 391

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR---KKKGDISSARILFE 234
           + +WN ++      G    + + F++M +       I   G        G +   R  F+
Sbjct: 392 VSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQ 451

Query: 235 HMPI-----KDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
            M        ++  +  M+D   + G L  A++L   MP
Sbjct: 452 SMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMP 490


>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
           Japonica Group]
          Length = 545

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/544 (37%), Positives = 321/544 (59%), Gaps = 40/544 (7%)

Query: 23  KTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNT 82
           ++  HI Q+ A +     +++P  L +LL +        +  A  +F+QI +P+ +M+NT
Sbjct: 19  RSLRHIKQMHAVMALRGFLSDPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNT 78

Query: 83  MIRGYTQSSNPQKALSFYVNM----KRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEV 138
           +IRG   ++ P+ A+S Y  M       G+  D  T+PFVL+AC  +     G ++H  V
Sbjct: 79  LIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHV 138

Query: 139 VKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAR 198
           VK G   D FV N LIGM++ CG++G A ++F+                       G+AR
Sbjct: 139 VKAGCESDAFVKNALIGMHASCGNLGIAAALFD-----------------------GRAR 175

Query: 199 EVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLV 258
           E        DA++WS MI G   ++GDI +AR LF+  P+KDL+SWN MI  YAK GD+ 
Sbjct: 176 E--------DAVAWSAMITGC-ARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMA 226

Query: 259 AAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACA 318
            A++LF+++PER+V SW++MI GY + G+   AL LF +M   G +PD+++++  +SACA
Sbjct: 227 LARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACA 286

Query: 319 QVGALDLGKWIHVFMKR--SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISY 376
             G LD+G+ +H  +    SR    +++  ALIDMY KCGS+  A  +F+SM  K+V ++
Sbjct: 287 DSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTW 346

Query: 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436
           N ++ GL ++G   E++  F +M    +  D++ F+ VLIACSH G+  +G   F  M+ 
Sbjct: 347 NSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQH 406

Query: 437 HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAE 496
              +EP ++HY C+VD+L RAG L++A   +++M  +PN  +W TLL ACR H  + LA+
Sbjct: 407 KYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAK 466

Query: 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNI 556
                L++ + D+ G YVLLSNIYA  G W  + ++RK+M    + KE G++   +DG++
Sbjct: 467 HANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDDSGVNKEAGQTF--VDGSV 524

Query: 557 KEFV 560
           K+ +
Sbjct: 525 KDII 528


>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
          Length = 594

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 219/576 (38%), Positives = 324/576 (56%), Gaps = 43/576 (7%)

Query: 33  AQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAER-LFNQIY--------QPNTYMHNTM 83
           A+L T  LI  P   ++++++  +     + +  R +F + Y          + Y+ N +
Sbjct: 13  ARLITTGLIKNPNLTTRIVLAFVASRRSYLAEFARCVFYEYYLCSFSAGEGEDPYLWNAV 72

Query: 84  IRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGF 143
           I+ Y+   +P++AL  +  M   G+ VD ++   VLKAC  L  L EG +IHG + K G 
Sbjct: 73  IKSYSHGIDPRRALLLFCLMIENGVCVDKFSLSLVLKACSRLEFLKEGMQIHGFLRKTGI 132

Query: 144 LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDE 203
             D+F+ N LIG+Y KCG +G AR VF+    +D VS+N ++ G+V+CG M  A ++FD 
Sbjct: 133 WSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLMKSAHKLFDL 192

Query: 204 MPQ--KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQ 261
           MP+  K+ ISW+ MI GY +    +++A  LF  MP KDLISWNSMI+G  K G +  A+
Sbjct: 193 MPREIKNLISWNSMISGYAQTADGLNTASKLFSEMPEKDLISWNSMINGCVKHGRIEDAK 252

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV------------------ 303
            LF+ MP R+V +W+ MIDGYA+ G    A  LF +M  + V                  
Sbjct: 253 GLFDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQRDVVACNSMMAGYVQNKYHME 312

Query: 304 --------------RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
                          PD  +++  +SA AQ+G L     +HV++   R  +   +  ALI
Sbjct: 313 ALEIFNDMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMHVYIVEKRFPLGGKLGVALI 372

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           DM+ KCGS+  A  +F  +  K++  +N MI GL ++G GE A     Q+E   I  D +
Sbjct: 373 DMHSKCGSIQHAISVFEGIENKSIDHWNAMIGGLAIHGLGELAFDMLMQIERCSIQPDXI 432

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            F+GVL ACSHSGL  EG   F+ M+R   IEP+L+HY CLVD+LSR+G +E A +++E 
Sbjct: 433 TFIGVLNACSHSGLVKEGLLCFELMRRKHXIEPRLQHYGCLVDVLSRSGSIELAKHLIED 492

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           MPM+PN  +W + L AC  H+     E+V + L+     +   YVLLSN+YA  GMW+  
Sbjct: 493 MPMEPNDVIWRSFLSACSTHEEFETGELVAKHLILQAGYNPSSYVLLSNMYASLGMWKDV 552

Query: 530 LRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIF 565
            R+R MM++RK+ K  G S IE+DGN+ EF   + F
Sbjct: 553 RRVRMMMKQRKLHKIPGCSWIELDGNVHEFFVQDKF 588


>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 614

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/593 (35%), Positives = 334/593 (56%), Gaps = 43/593 (7%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           +K   +SLL+  K+ + + QI A +    L  +  TL++L+      +  + + A R+FN
Sbjct: 7   MKGTYISLLKSCKSMSQLKQIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIFN 66

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
            I+ P+ +++N MI+ + +S + + A+S +  ++  G+  DNYTYP+VLK  G +  + E
Sbjct: 67  YIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVRE 126

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G ++H  VVK G   D +V N  + MY++ G +     VFE    +D VSWN+++ G+V 
Sbjct: 127 GEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVR 186

Query: 191 CGEMGKAREVF-------DEMPQKDAISWSI----------------------------- 214
           C    +A +V+       +E P +  +  ++                             
Sbjct: 187 CKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASELDLTTIM 246

Query: 215 ---MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271
              ++D Y  K G +S AR +F+ M +K++  W SM+ GY   G L  A+ LF   P R+
Sbjct: 247 GNALLDMY-CKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRD 305

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV 331
           +  W+ MI+GY Q    +E + LF EM  +GV+PD   V+  ++ CAQ GAL+ GKWIH 
Sbjct: 306 IVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHN 365

Query: 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391
           ++  +RI +D +V TALI+MY KCG ++++  IF  + +K+  S+  +I GL MNG   E
Sbjct: 366 YIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSE 425

Query: 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
           AL+ F  M+T G+  DD+ F+ VL ACSH+GL  EG ++F SM     IEP LEHY C +
Sbjct: 426 ALELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGCFI 485

Query: 452 DLLSRAGELEQALNIVESMPMKPN---LALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508
           DLL RAG L++A  +V+ +P + N   + L+G LL ACR + N+ + E +   L ++K+ 
Sbjct: 486 DLLGRAGLLQEAEELVKKLPAQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSS 545

Query: 509 DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
           D  L+ LL++IYA A  WE   ++R  M+   IKK  G S IE+DG  ++ +S
Sbjct: 546 DSSLHTLLASIYASADRWEDVRKVRNKMKDLGIKKVPGYSAIEVDGKWQQRLS 598


>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
          Length = 617

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 219/596 (36%), Positives = 332/596 (55%), Gaps = 44/596 (7%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           +P + LL   KT+  + +I A+L T  LI      ++++++  +     + +  RL  + 
Sbjct: 16  SPTIQLLGRCKTSEDVSKIHARLITTGLIKNSNLSTRIVLAFAASPRPYLAEFARLVFRE 75

Query: 73  YQ----------PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
           Y            + ++ N +I+ ++   +P++AL  +  M   G+ VD ++   VLKAC
Sbjct: 76  YHVCSSSPGGEVEDPFLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKAC 135

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
             L  +  G +IHG + K G   D+F+ N LIG+Y KCG +G AR +F+    +D VS+N
Sbjct: 136 SRLGFVKGGLQIHGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFN 195

Query: 183 LVLRGFVECGEMGKAREVFDEMPQ--KDAISWSIMIDGYRKKKGDISSARILFEHMPIKD 240
            ++ G+V+ G +  ARE+FD MP+  K+ ISW+ +I GY +    +  A  LF  MP KD
Sbjct: 196 SMIDGYVKRGLIESARELFDLMPREVKNLISWNSIISGYAQTSDGVDIASNLFAEMPEKD 255

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
           LISWNSMIDGY K G +  A+ LF+ MP R+V +W+ MIDGYA+ G   +A  LF +M  
Sbjct: 256 LISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPH 315

Query: 301 QGV--------------------------------RPDVISVMGAISACAQVGALDLGKW 328
           + V                                 PD  +++  +SA AQ+G L     
Sbjct: 316 RDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMD 375

Query: 329 IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
           +H+++   +  +   +  ALIDMY KCGS+  A  +F  +  K++  +N MI GL ++G 
Sbjct: 376 MHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGL 435

Query: 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
           GE A     Q+E   I  DD+ F+GVL ACSHSGL  EG   F+ M+R   IEP+L+HY 
Sbjct: 436 GESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYG 495

Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508
           C+VD+LSR+G +E A N+++ MP++PN  +W T L AC +H+     E+V + L+     
Sbjct: 496 CMVDILSRSGSIELAKNLIQEMPIEPNDVIWRTFLTACNHHKEFETGELVGKHLILQAGY 555

Query: 509 DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEI 564
           +   YVLLSN+YA  G W+   RIR MM++RKI+K  G S IE+DG + EF    I
Sbjct: 556 NPSSYVLLSNMYASFGKWKDVRRIRTMMKERKIEKIPGCSWIELDGRVHEFFVDSI 611


>gi|359474320|ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
          Length = 580

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/545 (37%), Positives = 309/545 (56%), Gaps = 38/545 (6%)

Query: 43  EPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVN 102
           EP    Q+L+S ++ +         + +    P+++     IR  TQ    ++A + YV 
Sbjct: 36  EPILARQILISASNYSATVAQYVHSVLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYVQ 95

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCD---VFVVNGLIGMYSK 159
           M+R GL    +     LKAC  +   + G  IHG+V K GF C    ++V   L+  Y K
Sbjct: 96  MQRWGLCPTTFALSSALKACARIAYRMGGISIHGQVQKFGFSCGGDGIYVETALVDFYCK 155

Query: 160 CGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY 219
            G M  AR +F+    +++VSWN +L G+++ G++  A+ VFDE+PQKD ISW+ MI GY
Sbjct: 156 LGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGY 215

Query: 220 RKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMI 279
             + GD+  A  LF+ MP ++  SWN+MI G+ + GD+ +A+  F+ MP++N  SW  MI
Sbjct: 216 -ARAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTMI 274

Query: 280 DGY-------------------------------AQHGNPKEALYLFREMLCQ--GVRPD 306
            GY                               AQ+  P EAL LF  ML     V+PD
Sbjct: 275 SGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPD 334

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
            +++   ISAC+Q+G L  G WI  +M+R  I MD  + TAL+D+Y KCGS+D+A  +F+
Sbjct: 335 EMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFH 394

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            + KK++++Y  MI G G+NG   +A+K F +M    I  + + F+G+L A +H+GL  E
Sbjct: 395 GLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEE 454

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           GYR F SMK++  + P ++HY  +VDL  RAG L++AL +++SMPM+P+  +WG LLLAC
Sbjct: 455 GYRCFTSMKKY-NLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLAC 513

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           R H NV   E+  +   EL+ D  G   LLSNIYA    W+   R+RK+ +++   K  G
Sbjct: 514 RLHNNVEFGEIAAQHCFELEPDTTGYRSLLSNIYASGERWDDVKRLRKVTKEKGFSKIPG 573

Query: 547 RSVIE 551
            S +E
Sbjct: 574 CSWME 578


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/562 (36%), Positives = 326/562 (58%), Gaps = 42/562 (7%)

Query: 52  MSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVD 111
            S+ SP+   +  A  +F  I +PN  + NTM RG+  +S+   AL  YV M   GLL +
Sbjct: 5   FSVLSPHFDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPN 64

Query: 112 NYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE 171
           +Y++PF+LK+C     L+EG +IHG V+K+G+  D++V   LI MY++ G +  A  VF+
Sbjct: 65  SYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFD 124

Query: 172 GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI 231
            S  + +VS+  ++ G+   G +  AR++FDE+  KD +SW+ MI GY  +  +   A  
Sbjct: 125 RSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGY-VETCNFKEALE 183

Query: 232 LFEHM------PI--------------------KDLISW-------------NSMIDGYA 252
           L++ M      P                     + L SW             N +ID Y+
Sbjct: 184 LYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYS 243

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
           K G++  A  LF  + +++V SW+ +I G+      KEAL LF+EML  G  P+ ++++ 
Sbjct: 244 KCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLS 303

Query: 313 AISACAQVGALDLGKWIHVFMKR--SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
            + ACA +GA+D+G+WIHV++ +    +T    + T+LIDMY KCG ++ A+++F SM  
Sbjct: 304 VLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLT 363

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           +++ S+N MI G  M+G    A   F++M   GI  DD+ F+G+L ACSHSG+   G  I
Sbjct: 364 RSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHI 423

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
           F+SM +   I PKLEHY C++DLL   G  ++A  ++ +MPM+P+  +W +LL AC+ H 
Sbjct: 424 FRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHN 483

Query: 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           NV L E   + L++++ ++ G YVLLSNIYA AG W+   +IR ++  + IKK  G S I
Sbjct: 484 NVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSI 543

Query: 551 EIDGNIKEFVSGEIFDVQSEEL 572
           EID  + EF+ G+ F  ++ E+
Sbjct: 544 EIDSVVHEFIIGDKFHPRNREI 565


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/565 (36%), Positives = 335/565 (59%), Gaps = 15/565 (2%)

Query: 26  THILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIR 85
           + + QI AQ+    L  +PFT S+++   +   + ++  A  +F+QI  P +Y  N++IR
Sbjct: 2   SQLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIR 61

Query: 86  GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC 145
           G T  +  Q+AL FY  M  +GL+ D YT+P + K+C       EG +IH    K+GF  
Sbjct: 62  GCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSC---RNSSEGKQIHCHSTKLGFAS 118

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D +  N L+ MYS CG +  AR VF+  E K +VSW  ++    +  +  +A  +FD M 
Sbjct: 119 DTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMM 178

Query: 206 QKDAIS------WSIMIDGYRKKKGDISSARILFEHMPI----KDLISWNSMIDGYAKIG 255
           + + +        +++    R +  D++  + + E++      + ++    ++D Y K G
Sbjct: 179 KSENVKPNEVTLVNVLTACARAR--DLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCG 236

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
            +  A+ LF++  E+N+FSW+IMI+G+ +  N +EAL LFREM  +G++ D +++   + 
Sbjct: 237 CVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLL 296

Query: 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS 375
           AC  +GAL+LGKW+H ++K+ RI +D+ + TAL+DMY KCGS++ A ++F+ M +K+V++
Sbjct: 297 ACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMT 356

Query: 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMK 435
           +  +I GL M G  E AL+ F +M  +G+  D + F+GVL ACSH+G   EG   F SM 
Sbjct: 357 WTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMS 416

Query: 436 RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLA 495
              GI+P +EHY  LVD+L RAG + +A  +++SMPM P+  + G LL ACR H N+  A
Sbjct: 417 DTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAA 476

Query: 496 EVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGN 555
           E   + L+E+     G YVLLSNIY  +  WE A R R++M +R ++K  G S IE+ G 
Sbjct: 477 ERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGV 536

Query: 556 IKEFVSGEIFDVQSEELELVIQSFV 580
           + EFV G+    QS E+  +++  +
Sbjct: 537 VHEFVKGDSSHRQSSEINEMLEDMI 561


>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Glycine max]
          Length = 566

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/539 (38%), Positives = 326/539 (60%), Gaps = 7/539 (1%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           + +LL+  K   H+ Q+ A +    L  + F L  L +S        +  A  +F+++  
Sbjct: 32  ITTLLKACKKREHLEQVHACIIHRGLEQDHF-LVFLFISRAHTLLSTLSYASSVFHRVLA 90

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           P+T + NT+I+ + Q +     LS +  MK  G L D++TYP V+KAC       EG  +
Sbjct: 91  PSTVLWNTLIKSHCQKNLFSHTLSAFARMKAHGALPDSFTYPSVIKACSGTCKAREGKSL 150

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           HG   + G   D++V   LI MY KCG +  AR VF+G   +++VSW  +L G+V  G++
Sbjct: 151 HGSAFRCGVDQDLYVGTSLIDMYGKCGEIADARKVFDGMSDRNVVSWTAMLVGYVAVGDV 210

Query: 195 GKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKI 254
            +AR++FDEMP ++  SW+ M+ G+  K GD+S AR +F+ MP K+++S+ +MIDGYAK 
Sbjct: 211 VEARKLFDEMPHRNVASWNSMLQGF-VKMGDLSGARGVFDAMPEKNVVSFTTMIDGYAKA 269

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
           GD+ AA+ LF+   E++V +WS +I GY Q+G P +AL +F EM    V+PD   ++  +
Sbjct: 270 GDMAAARFLFDCSLEKDVVAWSALISGYVQNGLPNQALRVFLEMELMNVKPDEFILVSLM 329

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMI---VQTALIDMYMKCGSLDEARRIFYSMTKK 371
           SA AQ+G L+L +W+  ++  S+I +D+    V  AL+DM  KCG+++ A ++F    ++
Sbjct: 330 SASAQLGHLELAQWVDSYV--SKICIDLQQDHVIAALLDMNAKCGNMERALKLFDEKPRR 387

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           +V+ Y  MI GL ++G GEEA+  F +M  EG+  D++ F  +L ACS +GL  EG   F
Sbjct: 388 DVVLYCSMIQGLSIHGRGEEAVNLFNRMLMEGLTPDEVAFTVILTACSRAGLVDEGRNYF 447

Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN 491
           QSMK+   I P  +HY+C+VDLLSR+G +  A  +++ +P +P+   WG LL AC+ + +
Sbjct: 448 QSMKQKYCISPLPDHYACMVDLLSRSGHIRDAYELIKLIPWEPHAGAWGALLGACKLYGD 507

Query: 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
             L E+V   L EL+  +   YVLLS+IYA A  W     +R  MR+R+++K  G S I
Sbjct: 508 SELGEIVANRLFELEPLNAANYVLLSDIYAAAERWIDVSLVRSKMRERRVRKIPGSSKI 566


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/564 (38%), Positives = 329/564 (58%), Gaps = 42/564 (7%)

Query: 7   AKFSLKNPLVSLLQISKTTT--HILQILAQLTTNDLITEPFTLSQLLMSLTSPNT---LN 61
           +K S K  ++ LL    TT+  H+ Q  A +     + + +    L+ S  + +T   L+
Sbjct: 29  SKLSHK-AILHLLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLS 87

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
            + + R+F+ + +PN ++ N MI+   +++ P KA+  Y  M       + YTYP VLKA
Sbjct: 88  FESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKA 147

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C     + EG ++H  +VK G   D  +++  I MY+  G +  AR + +          
Sbjct: 148 CSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILD---------- 197

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
                               D+  + DA+ W+ MIDGY +  G++ +AR LFE MP + +
Sbjct: 198 --------------------DKGGEVDAVCWNAMIDGYLRF-GEVEAARELFEGMPDRSM 236

Query: 242 IS-WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
           IS WN+MI G+++ G +  A++ F+EM ER+  SWS MIDGY Q G   EAL +F +M  
Sbjct: 237 ISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQK 296

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
           + +RP    +   +SACA +GALD G+WIH + KR+ I +D ++ T+L+DMY KCG +D 
Sbjct: 297 EKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDL 356

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           A  +F  M+ K V S+N MI GL M+G  E+A+  F++M+   I  +++ F+GVL AC+H
Sbjct: 357 AWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---IYPNEITFVGVLNACAH 413

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
            GL  +G  IF SM++  G+EP++EHY C+VDLL RAG L +A  +V S+P +P  A+WG
Sbjct: 414 GGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWG 473

Query: 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540
            LL ACR H NV L E V + L+EL+  + G Y LLSNIYA AG WE    +RK+M++R 
Sbjct: 474 ALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERG 533

Query: 541 IKKETGRSVIEID-GNIKEFVSGE 563
           IK   G S+I++  G + +F+ G+
Sbjct: 534 IKTTPGTSIIDLGRGEVHKFIIGD 557


>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Brachypodium distachyon]
          Length = 555

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/509 (38%), Positives = 302/509 (59%), Gaps = 37/509 (7%)

Query: 77  TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE-GTEIH 135
           T++HN +IR    S +P+ A + + ++ R G   D +T+P +LK+   L      G ++H
Sbjct: 43  TFLHNLLIRASATSPSPRLAFAAFSSILRSGDTPDRFTFPSLLKSASRLASFPRTGAQVH 102

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG-SEIKDLVSWNLVLRGFVECGEM 194
            + V+ G L DVFVVN L+ MY+        R VF+  + + DLV+WN +L G+V+CGE+
Sbjct: 103 AQAVRRGLLVDVFVVNTLLAMYAAFRDTRSMREVFDSCAGVADLVTWNTMLGGYVKCGEI 162

Query: 195 GKAREVFDEMPQKDAISWSIMIDGYR--------------------------------KK 222
           G+AR VF++MPQ++ +SWS M+  Y                                  +
Sbjct: 163 GEARRVFEQMPQRNGVSWSAMVGAYAGAGELDVAREMFDEMPAIGRNVVSWNSMITGFAR 222

Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
            G +  AR +F+ MP+++L+SWN+M+ GYA  G++  A++LF+ MPE++V SW+ MI GY
Sbjct: 223 HGLLPLARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKDVVSWTCMISGY 282

Query: 283 AQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
           AQ     E L LFR M  +  V P+ ++++  +SACA + AL+ G+W H F+ + ++ +D
Sbjct: 283 AQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFIDKHKMVLD 342

Query: 342 --MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
               +  ALIDMY KCG  D A +IF+S+ +KNV ++N +I GL +NG    ++  F QM
Sbjct: 343 SEFNLGAALIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQM 402

Query: 400 ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
              G   + + F+GVL AC+H GL  EG R FQSM   CG++P+ +HY C+VD+L RAG 
Sbjct: 403 RRSGEKPNGITFVGVLTACAHGGLVDEGRRCFQSMASTCGVQPEAKHYGCMVDMLGRAGL 462

Query: 460 LEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519
           LE+A  ++ SMPM P++ + G LL ACR H+ V +A  V   ++ L     G +VL+S+I
Sbjct: 463 LEEAEELIRSMPMVPDVMILGALLGACRMHKRVDVAARVQNEILGLSTQQSGCHVLISDI 522

Query: 520 YADAGMWEHALRIRKMMRKRKIKKETGRS 548
           YA AG W  AL  R +++K  I K  G S
Sbjct: 523 YAAAGKWADALYARGVLQKFGISKLRGSS 551



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 94/218 (43%), Gaps = 11/218 (5%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKG-LLVDNYTYPFVLK 120
           M+ A  LF+++ + +      MI GY Q+    + L  +  M+ +  +L +  T   VL 
Sbjct: 257 MNDARELFDRMPEKDVVSWTCMISGYAQARCYTETLELFRAMQSESNVLPNEVTMVSVLS 316

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNG--LIGMYSKCGHMGCARSVFEGSEIKDL 178
           AC  L  L EG   H  + K   + D     G  LI MYSKCG    A  +F   + K++
Sbjct: 317 ACAHLTALEEGRWAHAFIDKHKMVLDSEFNLGAALIDMYSKCGRTDLAVKIFHSLDQKNV 376

Query: 179 VSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR---KKKGDISSARILFEH 235
            +WN ++ G    G++  + +VF++M +       I   G        G +   R  F+ 
Sbjct: 377 SAWNALITGLAVNGDVRSSIDVFEQMRRSGEKPNGITFVGVLTACAHGGLVDEGRRCFQS 436

Query: 236 MPI-----KDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
           M        +   +  M+D   + G L  A++L   MP
Sbjct: 437 MASTCGVQPEAKHYGCMVDMLGRAGLLEEAEELIRSMP 474


>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
          Length = 687

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/574 (37%), Positives = 339/574 (59%), Gaps = 21/574 (3%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAER-LFNQ-I 72
           L SL        H+ ++ AQL    L  +P T S+L+ S      L    A R +F+  +
Sbjct: 101 LASLPHGLPRLRHVQELHAQLLKQGLHRDPHTASKLIASYA---LLRRVPACRCVFSAAV 157

Query: 73  YQPNTYMHNTMI-------RGYTQSSNPQKALSFY--VNMKRKGLLVDNYTYPFVLKACG 123
             PN+   ++         R Y  +S P  AL+ +  V ++++G     +TY F++KA  
Sbjct: 158 ALPNSPFPSSTTLLTKTLLRAYALNSLPHAALAVFLDVPLRQRG----TFTYSFLIKALA 213

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
              GL      H  VVK+G   D FV N LI  YSK   +  A+ VF+    +D+VSWN 
Sbjct: 214 A-AGLTPVRGAHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNT 272

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243
            +   V  GE+  AR +FDEMP+KD +SW+ M+DGY  K G+   A  LF+ MP ++++S
Sbjct: 273 AMAAMVRQGEVDAARSMFDEMPEKDTVSWNTMLDGY-AKAGEAEKAFELFQRMPGRNVVS 331

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
           W++++  Y K GD+  A+ +F++MP +N+ +W+IM+   AQ G  +EA  LF EM+   +
Sbjct: 332 WSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAI 391

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
             DVI+V+  ++ACA+ G+L LGK IH  +++ +++   +V  AL+DM+ KCG ++ A  
Sbjct: 392 ELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADY 451

Query: 364 IFYS-MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
           IF + + +K+++S+N++I G  M+G GE+AL+ FAQM+ +G   D +  + VL AC+H G
Sbjct: 452 IFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMG 511

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
           L  EG R F +M+   GI+P++EHY C+VDLL R G +++A+++++ MP +PN  +WG+L
Sbjct: 512 LVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSL 571

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
           L ACR H+NV  AE+ V  L  L+    G Y +LSNIYA+AG W    + R  M+    +
Sbjct: 572 LSACRLHKNVEYAELAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQ 631

Query: 543 KETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
           K  G S IE++    EF  G+    +S+++  +I
Sbjct: 632 KTAGSSWIELNEAFHEFTVGDRKHPESDQISDMI 665


>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
 gi|194696634|gb|ACF82401.1| unknown [Zea mays]
          Length = 615

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/574 (37%), Positives = 339/574 (59%), Gaps = 21/574 (3%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAER-LFNQ-I 72
           L SL        H+ ++ AQL    L  +P T S+L+ S      L    A R +F+  +
Sbjct: 29  LASLPHGLPRLRHVQELHAQLLKQGLHRDPHTASKLIASYA---LLRRVPACRCVFSAAV 85

Query: 73  YQPNTYMHNTMI-------RGYTQSSNPQKALSFY--VNMKRKGLLVDNYTYPFVLKACG 123
             PN+   ++         R Y  +S P  AL+ +  V ++++G     +TY F++KA  
Sbjct: 86  ALPNSPFPSSTTLLTKTLLRAYALNSLPHAALAVFLDVPLRQRG----TFTYSFLIKALA 141

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
              GL      H  VVK+G   D FV N LI  YSK   +  A+ VF+    +D+VSWN 
Sbjct: 142 A-AGLTPVRGAHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNT 200

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243
            +   V  GE+  AR +FDEMP+KD +SW+ M+DGY  K G+   A  LF+ MP ++++S
Sbjct: 201 AMAAMVRQGEVDAARSMFDEMPEKDTVSWNTMLDGY-AKAGEAEKAFELFQRMPGRNVVS 259

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
           W++++  Y K GD+  A+ +F++MP +N+ +W+IM+   AQ G  +EA  LF EM+   +
Sbjct: 260 WSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAI 319

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
             DVI+V+  ++ACA+ G+L LGK IH  +++ +++   +V  AL+DM+ KCG ++ A  
Sbjct: 320 ELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADY 379

Query: 364 IFYS-MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
           IF + + +K+++S+N++I G  M+G GE+AL+ FAQM+ +G   D +  + VL AC+H G
Sbjct: 380 IFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMG 439

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
           L  EG R F +M+   GI+P++EHY C+VDLL R G +++A+++++ MP +PN  +WG+L
Sbjct: 440 LVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSL 499

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
           L ACR H+NV  AE+ V  L  L+    G Y +LSNIYA+AG W    + R  M+    +
Sbjct: 500 LSACRLHKNVEYAELAVNELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQ 559

Query: 543 KETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
           K  G S IE++    EF  G+    +S+++  +I
Sbjct: 560 KTAGSSWIELNEAFHEFTVGDRKHPESDQISDMI 593


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/568 (36%), Positives = 327/568 (57%), Gaps = 46/568 (8%)

Query: 50  LLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL 109
           L + + SP+   +  A  +F  I +PN  + NTM+RG+  SS+P  AL  YV M   G L
Sbjct: 2   LELCVVSPHFDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHL 61

Query: 110 VDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSV 169
            ++Y++PF+LK+C       EG +IH +V+K+G   D +V   LI MY++ G +  AR V
Sbjct: 62  PNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKV 121

Query: 170 FEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSA 229
           F+ S  +D+VS   ++ G+   G+   AR+VFDE+ ++D +SW+ MI GY  + G    A
Sbjct: 122 FDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGY-VENGRYEEA 180

Query: 230 RILFEHM------PI--------------------KDLISW-----------------NS 246
             LF+ M      P                     + + SW                 N+
Sbjct: 181 LELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNA 240

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           +ID Y+K GD+  A  LF  +  ++V SW+ +I GY      KEAL LF+EML  G  P+
Sbjct: 241 LIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPN 300

Query: 307 VISVMGAISACAQVGALDLGKWIHVFM--KRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
            ++++  + ACA +GA+D+G+WIHV++  K   +T +  ++T+LIDMY KCG ++ A ++
Sbjct: 301 DVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQV 360

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F SM  +++ S+N MI G  M+G    A   F++M    +  DD+ F+G+L ACSHSGL 
Sbjct: 361 FNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLL 420

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
             G +IF+SM +   + PKLEHY C++DLL  +G  ++A  ++ +MPM+P+  +W +LL 
Sbjct: 421 DLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLK 480

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           AC+ H N+ LAE   + L++++ ++ G YVLLSNIYA AG WE   R+R ++  + +KK 
Sbjct: 481 ACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKV 540

Query: 545 TGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            G S IE+D  + EF+ G+    +  E+
Sbjct: 541 PGCSSIEVDSVVHEFIIGDKLHPRRREI 568


>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 535

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/561 (35%), Positives = 321/561 (57%), Gaps = 32/561 (5%)

Query: 4   LAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNM 62
           ++A   +   P++S  + +K+   I Q  A +    L  + F+ S+L+  + T+P    +
Sbjct: 1   MSACSSTTPVPILSFTERAKSLLEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTV 60

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
             A  + N+I  PN + HN++IR Y  SS P+ AL+ +  M    +  D Y++ FVLKAC
Sbjct: 61  SYAHSILNRIESPNGFTHNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKAC 120

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
               G  EG +IHG  +K   + DVFV N LI +Y + G+   AR V +   ++D VSWN
Sbjct: 121 AAFCGFEEGRQIHGLFMKSDLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWN 180

Query: 183 LVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLI 242
            +L  +++ G + +AR +FDEM +++  SW+ MI GY    G +  AR +F+ MP+KD++
Sbjct: 181 SLLSAYLDKGLVEEARALFDEMEERNVESWNFMISGY-AAAGLVKEAREVFDSMPVKDVV 239

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
           SWN+M+  YA +G      ++FN           +M+D  A+                  
Sbjct: 240 SWNAMVTAYAHVGCYNEVLEVFN-----------MMLDDSAE------------------ 270

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
            RPD  +++  +SACA +G+L  G+W+HV++ +  I ++  V TAL+DMY KCG +D+A 
Sbjct: 271 -RPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGKIDKAL 329

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
            +F   +K++V ++N +I GL ++G G++AL+ F++M  EG   + + F+GVL AC+H G
Sbjct: 330 EVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVG 389

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
           L  +  ++F+ M    GIEP +EHY C+VDLL R G+ E+A  +V  +P      L  +L
Sbjct: 390 LLDQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELVNEVPADEASILLESL 449

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
           L AC+    +  AE +   L+E    +   YV +SN+YA  G W+ A+ +R  MR  ++K
Sbjct: 450 LGACKRFGKLEQAERIANRLLESNPRESSGYVQMSNLYASHGRWDEAMEVRGKMRAERVK 509

Query: 543 KETGRSVIEIDGNIKEFVSGE 563
           K  G S+IE+DG + EF++GE
Sbjct: 510 KNPGCSMIEVDGVVHEFLAGE 530


>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
          Length = 579

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/567 (37%), Positives = 327/567 (57%), Gaps = 41/567 (7%)

Query: 33  AQLTTNDLITEPFTLSQLLMSLT-SPNTLNMDQAERLFNQIYQ----PNTYMHNTMIRGY 87
           A+L    +I      ++++++   SP     + A  +F++ +      + Y+ N MI+ +
Sbjct: 3   ARLIKTGIIKNSNLTTRIVLAFAASPRPYLAEFARFVFHEYHYGGEVEDPYLWNAMIKSH 62

Query: 88  TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV 147
           +  ++P++AL  +  M   G+ VD ++   V+KAC  L  +  G +IHG + K G   D+
Sbjct: 63  SHGTDPRRALLLFCLMLEIGVPVDKFSLSLVMKACSRLGFVKGGLQIHGFLKKTGLWSDL 122

Query: 148 FVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ- 206
           F+ N LIG+Y KCG +G AR +F+    +D VS+N ++ G+V+CG +  A E+FD MP+ 
Sbjct: 123 FLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIESASELFDLMPRE 182

Query: 207 -KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
            K+ ISW+ +I GY +    +  A  LF  MP KDLISWNSMIDGY K G +  A+ LF+
Sbjct: 183 MKNLISWNSLISGYAQTSEGVDIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFD 242

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV---------------------- 303
            +P R+V +W+ MIDGYA+ G   +A  LF +M  + V                      
Sbjct: 243 MVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGYVQNRFHMEALEI 302

Query: 304 ----------RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
                      PD  +++  +SA AQ+G L     +H+++   +  +   +  ALIDMY 
Sbjct: 303 FSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFLLGGKLGVALIDMYS 362

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCGS+  A  +F  +  K++  +N MI GL ++G GE A     Q+E   I  DD+ F+G
Sbjct: 363 KCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVG 422

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           VL ACSHSGL  EG   F+ M+R   IEP+L+HY C+VD+LSR+G +E A N++E MP++
Sbjct: 423 VLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIE 482

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD-DCGLYVLLSNIYADAGMWEHALRI 532
           PN  +W T L AC +H+     E+V + L+ L+AD +   YVLLSN+YA  GMW+   R+
Sbjct: 483 PNDVIWRTFLTACSHHKEFETGELVAKHLI-LQADYNPSSYVLLSNMYASFGMWKDVRRV 541

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEF 559
           R MM++RKI+K  G S IE+DG + EF
Sbjct: 542 RTMMKERKIEKIPGCSWIELDGXVHEF 568


>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1288

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/582 (35%), Positives = 339/582 (58%), Gaps = 49/582 (8%)

Query: 11   LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
            L+ P   +  +S + +++++ L       L T+P ++  LL S     T N+ +A  LF 
Sbjct: 703  LRTPRRFIFSLSCSFSNMIKEL-------LPTDPISIFNLLKSYALSPT-NILKANELFR 754

Query: 71   QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
            QI +P     N MIRG++Q++ P +A+  Y  M  + L  +N TYPF+LKAC  +   V 
Sbjct: 755  QIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFLLKACARISN-VS 813

Query: 131  GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
             T +H  V+K+GF  D+FV N LI  Y+    +G AR VF+    +DLVSWN ++ G+  
Sbjct: 814  CTTVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGR 873

Query: 191  CGEMGKAREVFDEMP----QKDAIS-------------WSI------------------- 214
            C    +   VF+EM     + DA++             W +                   
Sbjct: 874  CRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYL 933

Query: 215  ---MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271
               +ID Y  ++  +  AR +F+ M  ++++SWN+MI GY K G+LVAA++LF++MP R+
Sbjct: 934  GNTLIDMY-GRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRD 992

Query: 272  VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV 331
            V SW+ MI  Y+Q G   +A+ LF+EM+   V+PD I+V   +SACA +GALD+G+ +H 
Sbjct: 993  VISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHE 1052

Query: 332  FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391
            ++++  +  D+ V  ALIDMY KCG++++   +F  M K++ +S+  +IAGL +NG  + 
Sbjct: 1053 YIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADS 1112

Query: 392  ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
            AL  F+ M  EG+      F+GVL+AC+H+G+  +G   F+SM+R  G+ P+++HY C+V
Sbjct: 1113 ALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGLTPEMKHYGCVV 1172

Query: 452  DLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511
            DLLSR+G L +A   ++ MPM P++ +W  LL A + H N+ LAE+  + L+E    + G
Sbjct: 1173 DLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQVHGNLHLAEIATKKLLETDPSNSG 1232

Query: 512  LYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEID 553
             Y+L SN YA +  WE  +++R++M +  + K +  S +EI+
Sbjct: 1233 NYILSSNTYAGSNRWEDVIKMRRLMEESNVHKPSASSSVEIN 1274



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 161/343 (46%), Gaps = 16/343 (4%)

Query: 227  SSARILFEHMPIKDLISWNSMIDGYA-KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
            S + ++ E +P  D IS  +++  YA    +++ A +LF ++P   +  W+IMI G++Q 
Sbjct: 716  SFSNMIKELLPT-DPISIFNLLKSYALSPTNILKANELFRQIPRPTLSHWNIMIRGWSQT 774

Query: 286  GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
              P EA+  +  M  Q +  + ++    + ACA++  +     +H  + +     D+ V 
Sbjct: 775  NQPIEAIRNYNLMYSQALFGNNLTYPFLLKACARISNVSCTT-VHARVLKLGFDSDLFVS 833

Query: 346  TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
             ALI  Y     L  AR++F  M++++++S+N +I G G      E L  F +M    + 
Sbjct: 834  NALIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVK 893

Query: 406  KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC---GIEPKLEHYSCLVDLLSRAGELEQ 462
             D +  + V++AC+  G     + +  +M  +     +E  +   + L+D+  R   ++ 
Sbjct: 894  GDAVTMVKVVLACTVLG----EWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDL 949

Query: 463  ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522
            A  + + M  + N+  W  +++      N+  A  + +   ++   D   +  + + Y+ 
Sbjct: 950  ARRVFDRMRDR-NMVSWNAMIMGYGKAGNLVAARKLFD---DMPHRDVISWTSMISSYSQ 1005

Query: 523  AGMWEHALRIRKMMRKRKIKKE--TGRSVIEIDGNIKEFVSGE 563
            AG +  A+R+ + M   K+K +  T  SV+    +I     GE
Sbjct: 1006 AGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGE 1048


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/556 (38%), Positives = 323/556 (58%), Gaps = 35/556 (6%)

Query: 10  SLKNPL-VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERL 68
           S   PL +SLL I K+ T   QI A +    L ++PF   +LL       + ++D A RL
Sbjct: 2   SKTEPLCLSLLNICKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRL 61

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGL-LVDNYTYPFVLKACGVLMG 127
           F     P+ +MHNT+IRG  +S  PQ +L  ++ M+R      D++++ F++KA   L  
Sbjct: 62  FRYTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRS 121

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
           +  G ++H + +  G    +FV   LI MY                              
Sbjct: 122 VRVGIQLHCQALVHGLDTHLFVGTTLISMYG----------------------------- 152

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM 247
             ECG +G AR+VFDEMP+ +AI+W+ M+     + GD+   R LF+ MP+++L+SWN M
Sbjct: 153 --ECGFVGFARKVFDEMPEPNAIAWNAMVTAC-CRGGDMKGGRELFDLMPVRNLMSWNVM 209

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           + GY K G+L  A+++F EMP ++  SWS MI G+A +G  +EA   FRE+  +G+RP+ 
Sbjct: 210 LAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNE 269

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
            S+ G +SACAQ GAL+ GK +H F+++S +   + V  AL+D Y KCG++  A+ +F  
Sbjct: 270 TSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFER 329

Query: 368 -MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            M ++N++S+  M+A L M+G GEEA+  F +ME  GI  D++ F+ +L ACSH+GL  +
Sbjct: 330 IMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQ 389

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G   F  MK    IEP +EHY C+VDL  RAG+L++A   V  MP+     +W TLL AC
Sbjct: 390 GCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGAC 449

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
             H +V LAE V E L EL  ++   +VLLSN YA AG W+ A  +R+ M +++I K  G
Sbjct: 450 SMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITKTPG 509

Query: 547 RSVIEIDGNIKEFVSG 562
            S+IE+D  +  F++G
Sbjct: 510 WSMIEVDKIMYTFLAG 525


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/524 (38%), Positives = 303/524 (57%), Gaps = 42/524 (8%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N +I  YT+ + P+ AL+ Y  +++    VDN+  P VLKACG +     G EIHG V+K
Sbjct: 93  NFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLK 152

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
            G   DVFV N L+ MY +C  +  AR VF+    +D+VSW+ ++R      E   A E+
Sbjct: 153 KGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALEL 212

Query: 201 FDEM------PQKDAI-----------------------------------SWSIMIDGY 219
             EM      P + A+                                   + + ++D Y
Sbjct: 213 IREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMY 272

Query: 220 RKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMI 279
             K G +  AR LF  +  K ++SW +MI G  +   L  A+ LF+    R+V  W+ M+
Sbjct: 273 -AKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAML 331

Query: 280 DGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRIT 339
             YAQ     +A  LF +M   GVRP  ++++  +S CA  GALDLGKW+H ++ + R+ 
Sbjct: 332 SAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVE 391

Query: 340 MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
           +D I+ TAL+DMY KCG ++ A R+F     +++  +N +I G  M+G+GEEAL  FA+M
Sbjct: 392 VDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEM 451

Query: 400 ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
           E +G+  +D+ F+G+L ACSH+GL TEG ++F+ M    G+ P++EHY C+VDLL RAG 
Sbjct: 452 ERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGL 511

Query: 460 LEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519
           L++A  +++SMP+KPN  +WG L+ ACR H+N  L E+    L+E++ ++CG  VL+SNI
Sbjct: 512 LDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNI 571

Query: 520 YADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           YA A  W  A  +RK M+   +KKE G SVIE++G + EF+ G+
Sbjct: 572 YAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGD 615



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 116/273 (42%), Gaps = 13/273 (4%)

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W+ +I  Y +   P+ AL ++ ++       D       + AC QV    LGK IH F+ 
Sbjct: 92  WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
           +  +  D+ V  AL+ MY +C  ++ AR +F  M +++V+S++ MI  L  N   + AL+
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211

Query: 395 C-----FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449
                 F Q+    +    ++ L    A    G A   Y I  S   H G+       + 
Sbjct: 212 LIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTT----TA 267

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509
           L+D+ ++ G L  A  +   +  K  +  W  ++  C     +  A  + +     +  D
Sbjct: 268 LLDMYAKCGHLGLARQLFNGLTQK-TVVSWTAMIAGCIRSNRLEEARALFDS---TQNRD 323

Query: 510 CGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
             ++  + + YA A   + A  +   MR   ++
Sbjct: 324 VMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVR 356



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 101/237 (42%), Gaps = 9/237 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +++A  LF+     +  +   M+  Y Q++   +A + +  M+  G+     T   +L  
Sbjct: 309 LEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSL 368

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C V   L  G  +H  + K     D  +   L+ MY+KCG +  A  +F  +  +D+  W
Sbjct: 369 CAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMW 428

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR---KKKGDISSARILFEHMP- 237
           N ++ GF   G   +A ++F EM ++      I   G        G ++  + LFE M  
Sbjct: 429 NAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVH 488

Query: 238 ----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPK 289
               +  +  +  M+D   + G L  A ++   MP + N   W  ++     H NP+
Sbjct: 489 TFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQ 545


>gi|359497527|ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
 gi|296083555|emb|CBI23551.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/545 (37%), Positives = 308/545 (56%), Gaps = 38/545 (6%)

Query: 43  EPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVN 102
           EP    Q+L+S ++ +         + +    P+++     IR  TQ    ++A + YV 
Sbjct: 36  EPILARQILLSASNYSATVAQYVHSVLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYVQ 95

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCD---VFVVNGLIGMYSK 159
           M+R GL    +     LKAC  +   + G  IHG+V K GF      ++V   L+  Y K
Sbjct: 96  MQRWGLWPTTFALSSALKACARIAYRMGGLSIHGQVQKFGFSGGGDGIYVETALVDFYCK 155

Query: 160 CGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY 219
            G M  AR +F+    +++VSWN +L G+++ G++  A+ VFDE+PQKD ISW+ MI GY
Sbjct: 156 LGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGY 215

Query: 220 RKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMI 279
             + GD+  A  LF+ MP ++  SWN+MI GY + GD+ +A+  F+ MP+RN  SW  MI
Sbjct: 216 -ARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSARSFFDAMPQRNNVSWMTMI 274

Query: 280 DGY-------------------------------AQHGNPKEALYLFREMLCQ--GVRPD 306
            GY                               AQ+  PKEAL LF  ML     V+PD
Sbjct: 275 SGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPD 334

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
            +++   ISAC+Q+G L  G WI  +M+R  I MD  + TAL+D+Y KCGS+D+A  +F+
Sbjct: 335 EMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFH 394

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            + KK++++Y  MI G G+NG   +A+K F +M    I  + + F+G+L A +H+GL  E
Sbjct: 395 GLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEE 454

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           GY  F SMK++  + P ++HY  +VDL  RAG L++AL +++SMPM+P+  +WG LLLAC
Sbjct: 455 GYHCFTSMKKY-NLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLAC 513

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           R H NV   E+  +   EL+ D  G   LLSNIYA    W+   R+RK+ +++   K  G
Sbjct: 514 RLHNNVEFGEIAAQHCFELEPDTTGYCSLLSNIYASGERWDDVKRLRKVTKEKGFSKIPG 573

Query: 547 RSVIE 551
            S +E
Sbjct: 574 CSWME 578


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/563 (37%), Positives = 328/563 (58%), Gaps = 49/563 (8%)

Query: 23  KTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNT 82
           KT   + Q+ AQ+     I +P   ++LL      +  ++D A ++F  +++PN + +NT
Sbjct: 22  KTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNT 81

Query: 83  MIRGYTQSSNPQKALSFYVNMKRKGLLVDN-YTYPFVLKACGVLMGLVEGTEIHGEVVKM 141
           +IR  ++S++P  AL  ++ M     +  N +T+P V KACG    L EG ++HG  VK 
Sbjct: 82  LIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKF 141

Query: 142 GFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVF 201
           G   D FVV+ ++ MY  CG M  A  +F                           R VF
Sbjct: 142 GLDSDEFVVSNVVRMYLSCGVMEDAHRLF--------------------------YRRVF 175

Query: 202 DEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQ 261
            +             DG R KK  +             D++ WN MIDGY +IG+L  A+
Sbjct: 176 VDG-----------CDGIRDKKRRVDG-----------DVVLWNVMIDGYVRIGELEVAR 213

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
            LF+EMP+R+V SW++MI GYAQ G+ KEA+ +FREM    V P+ ++++  + A +++G
Sbjct: 214 NLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLG 273

Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
           AL+LGKW+H++  R+ I +D ++ +ALIDMY KCGS+++A ++F  + K+NV++++ +IA
Sbjct: 274 ALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIA 333

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
           GL M+G  ++ L  F  ME  G+   D+ ++G+L ACSH+GL  EG   F  M R  G+E
Sbjct: 334 GLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLE 393

Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEG 501
           P++EHY C+VDLL RAG LE++  ++ +MP+KP+  +W  LL AC+ H NV + + V E 
Sbjct: 394 PRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEH 453

Query: 502 LVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
           L+EL   D G YV LSNIYA  G WE   ++R MM++  ++K+ G S IE+DG I EF+ 
Sbjct: 454 LMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLV 513

Query: 562 GEIFDVQSEELELVIQSFVKTTI 584
            +    +S+++  ++Q   +  I
Sbjct: 514 EDDSHPKSKKIHSMLQEMSRNLI 536


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/583 (36%), Positives = 329/583 (56%), Gaps = 41/583 (7%)

Query: 31  ILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           I AQ+    L    + LS+L+   + SP+   +  A  +F  I +PN  + NTM RG+  
Sbjct: 6   IHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 65

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
           SS+P  AL  YV M   GLL + YT+PF+LK+C       EG +IHG V+K+G+  D++V
Sbjct: 66  SSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYV 125

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA 209
              LI MY + G +  AR VF+ S  +D+VS+  ++ G+   G +  A+++FDE+P KD 
Sbjct: 126 HTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDV 185

Query: 210 ISWSIMIDGYRKKKGDISSARILFEHMPI-------------------------KDLISW 244
           +SW+ MI GY +   +  +  +  E M                           + + SW
Sbjct: 186 VSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSW 245

Query: 245 -------------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
                        N++ID Y K G++  A  LF  +  ++V SW+ +I GY      KEA
Sbjct: 246 IDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEA 305

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR--SRITMDMIVQTALI 349
           L LF+EML  G  P+ ++++  + ACA +GA+++G+WIHV++ +    +      +T+LI
Sbjct: 306 LLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLI 365

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           DMY KCG ++ A+++F S+  +++ S+N MI G  M+G    A   F++M    I  DD+
Sbjct: 366 DMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDI 425

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            F+G+L ACSHSG+   G  IF+SMK    I PKLEHY C++DLL  +G  ++A  ++ +
Sbjct: 426 TFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINT 485

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           M M+P+  +W +LL AC+ H NV L E   + L++++  + G YVLLSNIYA AG W   
Sbjct: 486 MEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEV 545

Query: 530 LRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            +IR ++  + +KK  G S IEID  + EF+ G+ F  ++ E+
Sbjct: 546 AKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREI 588


>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
 gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
          Length = 638

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/617 (35%), Positives = 351/617 (56%), Gaps = 45/617 (7%)

Query: 14  PLVSLLQISKTTTHILQILAQL-TTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           P + LL+  +T   + Q+ A++  T  L     T   +L S++SP+   ++ A  +F   
Sbjct: 16  PTLLLLRHCETQNDVNQVHARIIKTGYLKNSSLTTKIILNSISSPHKPLVEFARYVFFTR 75

Query: 73  Y----------QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
           Y            + ++ N +I+ Y+  + P +AL  +  M   G  VD +++  +LKAC
Sbjct: 76  YAVQRIRRNHLDDDPFLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKAC 135

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
             +  + EG +IHG ++K+    ++F++N LI MY +CG +  AR VF+   I+D VS+N
Sbjct: 136 ARVCLVEEGKQIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYN 195

Query: 183 LVLRGFVECGEMGKAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKD 240
            ++ G+V+ G +  ARE+FD MP   K+ ISW+ M+ G+ + K  I  A  LFE MP +D
Sbjct: 196 SMIDGYVKSGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGIGLALELFEKMPERD 255

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK----------- 289
           L+SWN++I G+AK G +  A  LFN MP+R+V SWS MIDGYA+ G+ K           
Sbjct: 256 LVSWNTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPD 315

Query: 290 --------------------EALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKW 328
                               EAL +F EM  Q  + PD  +++ A+SA +Q+G ++    
Sbjct: 316 KDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAAS 375

Query: 329 IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
           +H +   + I++   V  ALIDMY KCGS++ A  IF  + +K +  +N MI+G+  NG 
Sbjct: 376 MHNYFLENGISVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMARNGL 435

Query: 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
           G+ A     +M    +  D + F+GVL AC+H+GL  EG   F+ M++   +EPKL+HY 
Sbjct: 436 GKLAFGMLLEMHRLSVKPDGITFIGVLNACAHAGLVKEGLICFELMRKVHKLEPKLQHYG 495

Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508
           C+VD+L +AG +E AL  +E MP++PN  +W TLL AC+NH+N T+ E++ + L+ + + 
Sbjct: 496 CMVDILGKAGLVEGALKFIEEMPIEPNDIIWRTLLSACQNHENFTIGELIAKHLMTMDSC 555

Query: 509 DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQ 568
           +   YVLLSNIYA  G+W  A ++R MM+K+ + K  G S IE++G + EF+  +     
Sbjct: 556 NSSSYVLLSNIYARLGLWSAASKVRMMMKKQNLTKVPGCSWIELEGVVHEFLVRDKSHPY 615

Query: 569 SEELELVIQSFVKTTIE 585
             E+  V+  F  + ++
Sbjct: 616 VSEIYSVLDGFGASNLQ 632


>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
 gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
          Length = 594

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/570 (37%), Positives = 332/570 (58%), Gaps = 39/570 (6%)

Query: 8   KFSLKNP--LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL-NMDQ 64
           K  L+ P   +SLLQ  K    ++Q+   L    LI E +   +LL+S  S + L +++ 
Sbjct: 25  KQHLRKPDHAISLLQNCKNPKDLIQLHTLLIKTSLIKEKYAFGRLLLSFASFDNLGSLNY 84

Query: 65  AERLFNQIYQP-NTYMHNTMIRGYTQSSNPQKALSFYVNM--KRKGLLVDNYTYPFVLKA 121
           A++LF+ +  P N++M+ TMI+ Y    NP++A +FY  M   ++ +  +++T+ +V  A
Sbjct: 85  AQKLFDTVDIPRNSFMYTTMIKAYANFGNPREAFAFYSRMLCDQRYVYPNDFTFTYVFSA 144

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C    G+ EG + H +++K  F   V                                SW
Sbjct: 145 CSKFNGVFEGKQAHAQMIKFPFEFGVH-------------------------------SW 173

Query: 182 NLVLRGFVECGEMG-KAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKD 240
           N +L  + + GE+G   R VFD++   D +SW+ +I+GY  K GD+  AR LF+ MP +D
Sbjct: 174 NSLLDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGY-VKSGDLDEARRLFDEMPERD 232

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
           ++SW  M+ GYA  G L  A  LF+EMP+RN+ SWS +I GY Q G   +AL LF+EM  
Sbjct: 233 VVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQV 292

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
             V+ D + V   +SACA++GALD G+W+H+++ +  I +D  + TALIDMY KCG +D 
Sbjct: 293 AKVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDM 352

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           A ++F     K V  ++ MI GL M+ FGE+A++ FA+M   GI   ++ ++ +L AC+H
Sbjct: 353 AWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINILAACTH 412

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
           SGL   G +IF  M  +   +P+++HY C+VDLL RAG L  A  +VE+MP+K + A+W 
Sbjct: 413 SGLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADPAIWR 472

Query: 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540
            LL AC+ H+NV L E V   L++++  +   YVL SN+YA    W+ + ++R+ M+ R 
Sbjct: 473 ALLSACKLHRNVELGEQVGRILIKMEPQNDMNYVLFSNVYAAVNRWDISGKLRREMKVRG 532

Query: 541 IKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570
           ++K  G S IE++G + EFVS +    QS+
Sbjct: 533 MQKNPGCSSIELNGAVHEFVSRDHSHPQSQ 562


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/567 (37%), Positives = 328/567 (57%), Gaps = 26/567 (4%)

Query: 10  SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLM-SLTSPNTLNMDQAERL 68
           S  N  +SLLQ         QIL+    + +  +P   S+LL  SL+  +     +   L
Sbjct: 26  SYHNFSLSLLQNLSHPRSFNQILSHAIASGVFRDPVVSSKLLYYSLSHDHDFAFSRT--L 83

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           F QI++PN +  N M R Y++SS P + ++ Y  M R G L DNY++PFVLKAC  L  L
Sbjct: 84  FFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLL 143

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE--GSEIKDLVSWNLVLR 186
            +G EIH   +K+G   DVFV N LI  +S CG +  AR+VF+   + ++D+VSWN ++ 
Sbjct: 144 HKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMIS 203

Query: 187 GFVECGEMGKAREVFDEM-------PQKDAISWSI-------MIDGYRKKKGDISSARIL 232
           G+++      A +VF E+       P +  +  ++       ++D  +K  G  + +  +
Sbjct: 204 GYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFV 263

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
                  D+   +S+ID Y+K G +  A+++F+ +P RN   W+ MI GYAQ    KEA+
Sbjct: 264 L------DVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAI 317

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            LFREM   G   D  ++   +SAC   GAL  G+WIH++ +R+ I MD+  + ALI MY
Sbjct: 318 ELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMY 377

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME-TEGIPKDDLIF 411
            KCG + +A  IF+ +T+ ++ S++ +I+GL MNG  ++AL  F+QME    I  +++ F
Sbjct: 378 SKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITF 437

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           LGVL AC+H G   +G   F +M +   + P +EHY C+VDLL RA  L +A   + ++P
Sbjct: 438 LGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLP 497

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           ++P++ +W +LL ACRNH N+ LAE   + + EL+   CG  VLLSN+YA A  W    R
Sbjct: 498 IQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDVKR 557

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKE 558
           +RK M  ++IKK+ G S +EIDG + E
Sbjct: 558 VRKDMATQRIKKQPGCSFVEIDGLVHE 584


>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
          Length = 612

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/595 (36%), Positives = 338/595 (56%), Gaps = 47/595 (7%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQ-------A 65
           +P + LL   KT+  + ++ A+L T  LI  P   ++++++  S +     +       A
Sbjct: 16  SPTIHLLGTCKTSHDLNKLHARLITTGLIKNPDLTTRIVLAFASASASASSRRPFLAEFA 75

Query: 66  ERLFNQIYQPNT------YMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVL 119
             +F++ +  ++      ++ N +I+ ++   +P+KAL     M   G+ VD +++   L
Sbjct: 76  RCVFHEHHVSSSGEVEDPFLWNVVIKSHSHGVDPRKALFLLCLMLENGVPVDKFSFSLAL 135

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           KAC  L  + EGT++HG ++K G   D+F+ N LIG+Y KCG +G AR VF+    +D V
Sbjct: 136 KACSRLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDRMPQRDSV 195

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHMP 237
           S+N ++ G+++CG +  A E+F  MP  +++ I+W+ MI GY ++   ++ A  LF+ MP
Sbjct: 196 SYNSMIDGYLKCGLVESAGELFGLMPREKRNLITWNSMIGGYAQRADGVNVAAKLFDEMP 255

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
            KDLISWNSMI GY K G +  A+ LF+ MP R+V +W+IMIDGY + G   EA  LF +
Sbjct: 256 EKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHEAKTLFDQ 315

Query: 298 MLCQGV--------------------------------RPDVISVMGAISACAQVGALDL 325
           M  + V                                 PD  S++  +SA AQ+G L  
Sbjct: 316 MPHRDVVVYNSMMSGXVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAXAQLGRLSK 375

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
              +H+++   +      +  ALIDMY KCGS+  A R+F  +  K++  +N MI GL +
Sbjct: 376 AIDMHLYIVEKQFPSSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAV 435

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           +G GE A     Q+E   I  D + F+GVL ACSHSGL  EG   F+ M+R   IEP+L+
Sbjct: 436 HGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQ 495

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
           HY C+VD+L+R+G +E A N++E MP++PN  +W T L AC +H+     E+V + L+  
Sbjct: 496 HYGCMVDILARSGSIELAKNLIEGMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQ 555

Query: 506 KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
              +   YVLLSN+YA  GMW+   R+R MM+++ I+K  G S IE+DG + EF+
Sbjct: 556 AGYNPSSYVLLSNMYASNGMWKDVRRVRTMMKEKNIEKIPGCSWIELDGRVHEFL 610


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/582 (37%), Positives = 334/582 (57%), Gaps = 51/582 (8%)

Query: 54  LTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNY 113
           + SP+   +  A  +F  I +PN  + NTM RG+  S +P  AL  YV M   GLL ++Y
Sbjct: 5   ILSPHFEGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSY 64

Query: 114 TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS 173
           T+PF+LK+C  L    EG +IHG V+K+G+  D++V   LI MY +   +  A  VF+ S
Sbjct: 65  TFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRS 124

Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILF 233
             +D+VS+  ++ G+   G +  AR +FDE+P KD +SW+ MI GY  + G+   A  LF
Sbjct: 125 SHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGY-VETGNYKEALELF 183

Query: 234 EHM------PIKDLI--------------------SW-------------NSMIDGYAKI 254
           + M      P +  +                    SW             N++ID Y+K 
Sbjct: 184 KEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKC 243

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
           G++  A  LF  +  ++V SW+I+I GY      KEAL LF+EML  G  P+ ++++  +
Sbjct: 244 GEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSIL 303

Query: 315 SACAQVGALDLGKWIHVFM-KRSR-ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
            ACA +GA+D+G+WIHV++ KR + +T    ++T+LIDMY KCG ++ A ++F SM  K+
Sbjct: 304 HACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKS 363

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
           + ++N MI G  M+G    A   F++M    I  DD+ F+G+L ACSH+G+   G  IF+
Sbjct: 364 LPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFR 423

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV 492
           SM  +  I PKLEHY C++DLL  +G  ++A  ++ +M M+P+  +W +LL AC+ H NV
Sbjct: 424 SMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNV 483

Query: 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
            L E   + L +++ ++ G YVLLSNIYA AG W    RIR ++  + +KK  G S IEI
Sbjct: 484 ELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEI 543

Query: 553 DGNIKEFVSGEIFDVQS-------EELELVIQS--FVKTTIE 585
           D  + EF+ G+ F  ++       EE+E+++Q   FV  T E
Sbjct: 544 DSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSE 585


>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
          Length = 597

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/590 (36%), Positives = 330/590 (55%), Gaps = 43/590 (7%)

Query: 18  LLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLF---NQIYQ 74
           LL   KT   + +I A+L T  +I      ++++++  S     + +  R     + +Y 
Sbjct: 2   LLGSCKTADDVNKIHARLITTGVIKNSNLTTRIVLAFASSRRQYLAEFARCVFEEHHVYS 61

Query: 75  ------PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
                  + ++ N +I+ ++  ++P+++L  +  M   G+ VD ++   VLKAC  L  +
Sbjct: 62  LPYGETEDPFLWNAVIKSHSHGTDPRRSLFLFCLMLENGVSVDKFSLSLVLKACSRLGFV 121

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
             G  IHG + K G   D+F+ N LIG+Y KCG +G +R VF+    +D VS+N ++ G+
Sbjct: 122 KAGMXIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMIDGY 181

Query: 189 VECGEMGKAREVFDEMPQ--KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNS 246
           V+CG +  ARE+FD MP+  K+ ISW+ +I GY +    ++ A  LF  MP KDLISWNS
Sbjct: 182 VKCGLIESARELFDLMPKEMKNLISWNCLISGYAQTSDGVNIASKLFSEMPEKDLISWNS 241

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV--- 303
           MIDGY K G +  A+ LF+ MP R+V +W+ MIDGYA+ G   +A  LF ++  + V   
Sbjct: 242 MIDGYVKHGRIEDAKDLFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFDQIPHRDVVAY 301

Query: 304 -----------------------------RPDVISVMGAISACAQVGALDLGKWIHVFMK 334
                                         PD  +++  +SA AQ+G L     +H ++ 
Sbjct: 302 NSMMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHFYIV 361

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
           + +  +   +  ALIDMY KCGS+  A  +F  +  KN+  +N +I GL ++G G  A  
Sbjct: 362 KKQFFIGGKLGVALIDMYSKCGSIQHAMLVFKGLENKNIDHWNAIIGGLAIHGLGGPAFD 421

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
              Q+E   I  DD+ F+GVL ACSHSGL  EG   F+ M+R   IEP+L+HY C+VD+L
Sbjct: 422 MLLQIERLSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDIL 481

Query: 455 SRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYV 514
           SR+G +E A  ++E MP++PN  +W T L AC +H+   + E+V + L+     +   YV
Sbjct: 482 SRSGSIELAKILIEKMPIEPNDVIWRTFLTACSHHKEFEMGELVAKHLILQAGYNPSSYV 541

Query: 515 LLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEI 564
           LLSN+YA  GMW+   R+R MM++RKI+K  G S IE+DG + EF    I
Sbjct: 542 LLSNMYASCGMWKDVRRVRTMMKERKIQKIPGCSWIELDGRVHEFFVDSI 591


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/551 (38%), Positives = 322/551 (58%), Gaps = 37/551 (6%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLM--SLTSPNTLNMDQAERLFNQIY 73
           ++L    K+   + QI A +    L + P    +LL+  ++T P++L+   A RLF  I 
Sbjct: 9   LALFSKCKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHY--ARRLFLDIR 66

Query: 74  QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGL-LVDNYTYPFVLKACGVLMGLVEGT 132
            P+ +M+NT+IRG + S  P  AL  +V M+RK + L D++++ F+LKA      L  G 
Sbjct: 67  NPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGL 126

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           ++H   V  G    +FV   LI MY++C  +     VF                      
Sbjct: 127 QLHCLAVGYGLDSHLFVGTTLISMYAECACL-----VF---------------------- 159

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA 252
               AR+VFDEM + + ++W+ ++    + +G +  A  +F  MPI++L SWN M+ GY 
Sbjct: 160 ----ARKVFDEMIEPNIVAWNAIVAACFRCEG-VKDAEQVFRCMPIRNLTSWNIMLAGYT 214

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
           K G+L  A+++F +MP ++  SWS MI G+A +GN  +A   FRE+  +G+RP+ +S+ G
Sbjct: 215 KAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTG 274

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
            +SACAQ GA + G+ +H F+++S     + V  ALID Y KCG+LD AR +F +M +++
Sbjct: 275 VLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRS 334

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
            +S+  MIAG+ M+G+GEEA++ F +ME   I  D + F+ +L ACSH+GL   G   F 
Sbjct: 335 AVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFS 394

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV 492
            M    GIEP +EHY C+VDL  RAG+L+QA + V  MP+ PN  +W TLL AC  H N+
Sbjct: 395 RMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNL 454

Query: 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
            LA  V   L EL  ++ G +VLLSNIYA AG W+    +R+ M  +++KK  G S+IE+
Sbjct: 455 YLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEV 514

Query: 553 DGNIKEFVSGE 563
           +  I  FV+GE
Sbjct: 515 NRIIYSFVAGE 525


>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
 gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
          Length = 690

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/566 (36%), Positives = 326/566 (57%), Gaps = 8/566 (1%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMS---LTSPNTLNMDQAERLFNQ 71
           L SL        H+ ++ AQ+    L  +P   S+L+ S   L          +      
Sbjct: 107 LASLPHGLPRLRHVQELHAQVLRQGLHRDPRAASKLIASYALLRRVPACRCVFSAAAAPP 166

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
                  + NT++R Y  +S P  AL+ +V+M  +    D +TY F++KA     G+   
Sbjct: 167 FAPSTALLANTLLRAYALNSLPHAALAVFVDMPLRQR--DTFTYSFLIKALAT-AGVTPV 223

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
              H  V K+G + D FV N LI  YSK   +  A+ VF+    +D+VSWN  +   V  
Sbjct: 224 RAAHTHVFKLGSVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRK 283

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGY 251
           GE+  AR +FDEMP+KD +SW+ M+DGY  K G+   A  LF+ MP ++++SW++++  Y
Sbjct: 284 GEVDAARSMFDEMPEKDTVSWNTMLDGY-AKAGEAEEAFELFQRMPGRNVVSWSTVVSAY 342

Query: 252 AKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
            K GD+  A+ +F++MP +N+ +W+IM+   AQ G   EA  LF EM    +  DV++V+
Sbjct: 343 CKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVV 402

Query: 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS-MTK 370
             ++ACA+ G L LGK IH  +++ ++    +V  AL+DM+ KCG ++ A  IF + + +
Sbjct: 403 SILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIFDTEIVE 462

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           K+ +S+N++I G  M+G GE+AL  F QM+ +G   D +  + VL AC+H GL  EG R 
Sbjct: 463 KDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRF 522

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
           F +M+   GI+P++EHY C+VDLL R G +++A+++++SMP +PN  +WG+LL ACR H+
Sbjct: 523 FANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLLSACRLHK 582

Query: 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           NV  AE+    L  L+  + G Y +LSNIYA+AG W    + R  M+    +K  G S I
Sbjct: 583 NVEYAELAANELSNLQPSNAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWI 642

Query: 551 EIDGNIKEFVSGEIFDVQSEELELVI 576
           E+D    EF  G+    +S+++  +I
Sbjct: 643 ELDEAFHEFTVGDRKHPESDQISDMI 668


>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/592 (35%), Positives = 343/592 (57%), Gaps = 29/592 (4%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTT-----NDLITEPFTLSQLLMSLTSPNTLNMDQA 65
           +++  +SLL+   T   + QI AQ+ T     ND +T  F  +   +         + +A
Sbjct: 21  VEDKFISLLRTCGTCVRLHQIQAQIVTHGLEGNDYVTPSFITACARLG-------GIRRA 73

Query: 66  ERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVL 125
            R+F++  QPN    N M RGY Q++     +  +  M R G   + +T+P V+K+C   
Sbjct: 74  RRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATA 133

Query: 126 MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARS--VFEGSEIKDLVSWNL 183
               EG E+H  V K GF  + FV   LI MYS  G +  A +  VF     K++ +W  
Sbjct: 134 NAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTA 193

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243
           ++   V C +M  AR +FD  PQ+D + W++++ GY  + GD+ +AR LF+ MP +D++S
Sbjct: 194 IVAAHVACRDMVSARRLFDLAPQRDVVLWNVVVSGY-IELGDMVAARELFDRMPDRDVMS 252

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC--- 300
           WN+++ GYA  G++ +  +LF EMP RNV+SW+ +I GY ++G  KEAL  F+ ML    
Sbjct: 253 WNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLVE 312

Query: 301 ----QG----VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
               +G    V P+  +V+  ++AC+++G L++GKW+HV+ +      ++ V  ALIDMY
Sbjct: 313 GEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVYAESIGYKGNLFVGNALIDMY 372

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCG +++A  +F  +  K++I++N +I GL M+G   +AL  F +M+  G   D + F+
Sbjct: 373 AKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVADALSLFERMKRAGERPDGVTFV 432

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
           G+L AC+H GL   G   FQSM     I P++EHY C+VDLL RAG +++A++IV  MPM
Sbjct: 433 GILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVRKMPM 492

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           +P+  +W  LL ACR ++NV +AE+ ++ L+EL+ ++ G +V++SNIY D G  +   R+
Sbjct: 493 EPDAVIWAALLGACRMYKNVEMAELALQRLIELEPNNPGNFVMVSNIYKDLGRSQDVARL 552

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTI 584
           +  MR    +K  G SVI  + ++ EF S    D +  E + + ++    TI
Sbjct: 553 KVAMRDTGFRKVPGCSVIGCNDSMVEFYS---LDERHPETDSIYRALQGLTI 601


>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/558 (37%), Positives = 332/558 (59%), Gaps = 21/558 (3%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           N ++SLL+  KT   + ++   + T  +I +   LS+L+      ++ N++ A+ +FNQI
Sbjct: 6   NSILSLLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQI 65

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
            +P+ Y+ N+MI+GY+ S +P +AL+ Y  M++KG   D++T+PFVLKAC ++ G   G 
Sbjct: 66  DRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQ 125

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
            +H  +VK GF  DV+    L+ MY+ CG M  A  VF+     ++V+W  ++ G +   
Sbjct: 126 CVHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISND 185

Query: 193 EMGKAREVFDEM-----PQKDAISWSIMIDGYRKKKGDISSARILFEHM------PIKDL 241
              +A  V+ +M        +    ++++   R +  D+++ R + +        P +  
Sbjct: 186 CPSEAVRVYKDMELWSVAPNEITMVNVLVACARSR--DLNAGRWVHDRTGQMGLDPFQSN 243

Query: 242 ISWN-----SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
            ++N     +++D YAK G L  A+ LFN+MP RN+ +W+ MI  Y Q+G   EAL LF 
Sbjct: 244 SNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFS 303

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
           +M   G  PD  + +  I ACA +GAL  G+ +H ++ ++ +T D  + TAL+DMY K G
Sbjct: 304 DMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSG 363

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME--TEGIPKDDLIFLGV 414
             + A+++F  + KK+V ++  +I GL M+G GEEAL  F +M+  T  IP D++ ++GV
Sbjct: 364 DAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIP-DEITYIGV 422

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L ACSH G   +G   F SMK   GIEP  +HY C+VDLLSRAG L +A  +VE MP++P
Sbjct: 423 LSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEP 482

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           N A+W  LL  C+ +QN+ +A+ V   + EL+ D  G+YVLLSNIYA A  WE     R+
Sbjct: 483 NTAIWSALLNGCKIYQNIDVADRVRRRVRELEVDGSGVYVLLSNIYAGACRWEEVKMARE 542

Query: 535 MMRKRKIKKETGRSVIEI 552
           +M++RKI+K  G S +E+
Sbjct: 543 LMKERKIQKSLGHSSVEM 560


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/554 (36%), Positives = 323/554 (58%), Gaps = 39/554 (7%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
            +SL+  SKT   + QI AQ+  ++L +     +QL+ S +   ++N   A  +FN    
Sbjct: 84  FISLIHGSKTILQLHQIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLA--VFNHHKP 141

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
            N +  N +IRG T +S+   A+  +  M R G+  D  TYPFVLK+   L     G  I
Sbjct: 142 KNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAI 201

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           H  +++ G   D FV   L+ MY                               V+  ++
Sbjct: 202 HCMILRCGIELDSFVRVSLVDMY-------------------------------VKVEKL 230

Query: 195 GKAREVFDEMPQK-----DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMID 249
           G A +VFDE P++      A+ W+++I G   K G +  A  LF+ MP K+ +SW+++ID
Sbjct: 231 GSAFKVFDESPERFDSGSSALLWNVLIKGC-CKAGSMKKAVKLFKAMPKKENVSWSTLID 289

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
           G+AK GD+  A +LF++MPE+NV SW+ M+DG++++G+ ++AL +F +ML +GVRP+  +
Sbjct: 290 GFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFT 349

Query: 310 VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369
           ++ A+SACA++G L+ G  IH ++K + + +   + TAL+DMY KCG+++ A  +F    
Sbjct: 350 IVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETE 409

Query: 370 KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR 429
           +K++ ++ VMI G  ++G  E+A+ CF QM   GI  D+++FL +L AC HSG    G  
Sbjct: 410 QKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLN 469

Query: 430 IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
            F SM+    IEP ++HY+ +VD+L R+G+L++AL  +E MPM P+  +WG L  ACR H
Sbjct: 470 FFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAH 529

Query: 490 QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSV 549
           +   +A+  +  L++L+    G Y+ LSN YA  G WE A R+R +M+ R + K +G S 
Sbjct: 530 KKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNSGWSC 589

Query: 550 IEIDGNIKEFVSGE 563
           IE++G +  FVSG+
Sbjct: 590 IEVEGQVHRFVSGD 603


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/574 (35%), Positives = 342/574 (59%), Gaps = 18/574 (3%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
            SL+  +     + QI A+L    L    F +++L+ + +S   +    A ++F+ + +P
Sbjct: 25  ASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITF--ARQVFDDLPRP 82

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
             +  N +IRGY+++++ Q AL  Y NM+   +  D++T+P +LKAC  L  L  G  +H
Sbjct: 83  QIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVH 142

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI--KDLVSWNLVLRGFVECGE 193
            +V ++GF  DVFV NGLI +Y+KC  +G AR+VFEG  +  + +VSW  ++  + + GE
Sbjct: 143 AQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGE 202

Query: 194 MGKAREVFDEMPQKDA-ISWSIMIDGYRK-------KKGDISSARILFEHMPIKD--LIS 243
             +A E+F +M + D    W  ++            K+G    A ++   + I+   LIS
Sbjct: 203 PMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLIS 262

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
            N+M   YAK G +  A+ LF++M   N+  W+ MI GYA++G  +EA+ +F EM+ + V
Sbjct: 263 LNTM---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDV 319

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
           RPD IS+  AISACAQVG+L+  + ++ ++ RS    D+ + +ALIDM+ KCGS++ AR 
Sbjct: 320 RPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARL 379

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           +F     ++V+ ++ MI G G++G   EA+  +  ME  G+  +D+ FLG+L+AC+HSG+
Sbjct: 380 VFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGM 439

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             EG+  F  M  H  I P+ +HY+C++DLL RAG L+QA  +++ MP++P + +WG LL
Sbjct: 440 VREGWWFFNRMADH-KINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALL 498

Query: 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
            AC+ H++V L E   + L  +   + G YV LSN+YA A +W+    +R  M+++ + K
Sbjct: 499 SACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNK 558

Query: 544 ETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           + G S +E+ G ++ F  G+    + EE+E  ++
Sbjct: 559 DVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVE 592


>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 591

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/586 (35%), Positives = 329/586 (56%), Gaps = 43/586 (7%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           LK   +SLL+  K+ + + QI A +    L  +   L++L+      +  + + A R+FN
Sbjct: 7   LKGTYISLLKSCKSMSQLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFN 66

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
            I+ P+ +++N MI+ + +  + + A+S +  ++ +G+  DNYTYP+VLK  G +  + E
Sbjct: 67  HIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVRE 126

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G +IH  VVK G   D +V N L+ MY++ G +     VFE    +D VSWN+++ G+V 
Sbjct: 127 GEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVR 186

Query: 191 CGEMGKAREVF-------DEMPQKDAISWSI----------------------------- 214
           C    +A +V+       +E P +  +  ++                             
Sbjct: 187 CKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTPIM 246

Query: 215 ---MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271
              ++D Y  K G +S AR +F+ M +K++  W SM+ GY   G L  A+ LF   P R+
Sbjct: 247 GNALLDMY-CKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRD 305

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV 331
           V  W+ MI+GY Q  + ++A+ LF EM  +GV PD   V+  ++ CAQ+GAL+ GKWIH 
Sbjct: 306 VVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHN 365

Query: 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391
           ++  +RI MD +V TALI+MY KCG ++++  IF  +   +  S+  +I GL MNG   E
Sbjct: 366 YIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSE 425

Query: 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
           AL+ F  M+T G+  DD+ F+ VL AC H+GL  EG ++F SM     IEP LEHY C +
Sbjct: 426 ALELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFI 485

Query: 452 DLLSRAGELEQALNIVESMPMKPN---LALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508
           DLL RAG L++A  +V+ +P + N   + L+G LL ACR + N+ + E +   L ++K+ 
Sbjct: 486 DLLGRAGLLQEAEELVKKLPDQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSS 545

Query: 509 DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDG 554
           D  L+ LL++IYA A  WE   ++R  M+   IKK  G S IE+DG
Sbjct: 546 DSSLHTLLASIYASADRWEDVRKVRSKMKDLGIKKVPGYSAIEVDG 591


>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
 gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
          Length = 614

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/485 (39%), Positives = 303/485 (62%), Gaps = 7/485 (1%)

Query: 93  PQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNG 152
           P+ AL+ +  M R+    D++TY F++KA     G+     +H  VVK+G + D FV N 
Sbjct: 114 PRDALAAFSAMPRR----DSFTYSFLIKALSA-AGVAPVRAVHSHVVKLGSVEDTFVGNA 168

Query: 153 LIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISW 212
           LI  YSK G    AR VF+    +D+VSWN  +   V  GE+   R++FDEMP+KD +SW
Sbjct: 169 LIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSW 228

Query: 213 SIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
           + ++DGY  K G++ +A  LF+ MP ++++SW++M+ GY K GDL  A+ +F++MP +N+
Sbjct: 229 NTILDGY-TKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNL 287

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
            +W+IM+   AQ G   EA  LF +M    V  DV +V+  ++ACA+ G+L LGK IH +
Sbjct: 288 VTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRY 347

Query: 333 MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNGFGEE 391
           +++  +     V  ALIDM+ KCG ++ A  +F + T +K+ +S+N +I G  M+G G++
Sbjct: 348 VRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDK 407

Query: 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
           AL+ FAQM+ +G   D +  + VL AC+H G   EG R F +M+R  GI P++EHY C++
Sbjct: 408 ALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMI 467

Query: 452 DLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511
           DLL R G +++A+++++SMP +PN  +WG+LL ACR H+NV  AE+ V  L +L+  + G
Sbjct: 468 DLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAG 527

Query: 512 LYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEE 571
            Y +LSNIYA+AG W    + R  M+    +K  G S +E++    EF  G+     S++
Sbjct: 528 NYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQ 587

Query: 572 LELVI 576
           +  ++
Sbjct: 588 ISEMV 592



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 98/238 (41%), Gaps = 12/238 (5%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A  +F+++   N      M+    Q     +A   +  MK   + +D      +L 
Sbjct: 271 DLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILA 330

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI-KDLV 179
           AC     L  G  IH  V K        V N LI M+ KCG +  A  VF+   + KD V
Sbjct: 331 ACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSV 390

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEH 235
           SWN ++ GF   G   KA E+F +M Q+    DA++  I +       G +   R  F +
Sbjct: 391 SWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVT-MINVLSACTHMGFVDEGRRHFSN 449

Query: 236 MP-----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
           M      +  +  +  MID   + G +  A  L   MP E N   W  ++     H N
Sbjct: 450 MERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKN 507


>gi|345505234|gb|AEN99841.1| chlororespiratory reduction 4, partial [Raphanus sativus]
          Length = 577

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/519 (39%), Positives = 307/519 (59%), Gaps = 34/519 (6%)

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           + ++ N +I+ ++  ++P+KAL  +  M   G+LVD ++   VLKAC  L    EG ++H
Sbjct: 57  DPFLWNAVIKSHSHGADPRKALLLFCLMLENGVLVDKFSMSLVLKACSRLGFAKEGMQVH 116

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
           G ++K     D+F+ N LIG+Y KCG +G AR VF+    +D VS+N ++ G+V+CG + 
Sbjct: 117 GFLIKSRTWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLVE 176

Query: 196 KAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAK 253
            A E+FD MP  +++ I+W+ MI GY ++   ++ A  LF+ MP KDLISWNSMI GY K
Sbjct: 177 SAGELFDLMPREKRNLITWNSMIGGYAQRADGVNVASKLFDEMPEKDLISWNSMIGGYVK 236

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV---------- 303
            G +  A+ LF+ MP R+V +W+IMIDGY + G   +A  LF +M  + V          
Sbjct: 237 HGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHQAKTLFDQMPHRDVVAYNSMMSGF 296

Query: 304 ----------------------RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
                                  PD  +++  +SA AQ+G L     +H+++   R  + 
Sbjct: 297 VQNRYHIEALEVFNHMEKESHLSPDETTLVIVLSAIAQLGRLTKAIDMHLYIVEKRFLLS 356

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
             +  ALIDMY KCGS+  A R+F  +  K++  +N MI GL ++G GE A     Q+E 
Sbjct: 357 GKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIER 416

Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
             I  D + F+GVL ACSHSGL  EG   F+ M+R   IEP+L+HY C+VD+L+R+G +E
Sbjct: 417 RSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIE 476

Query: 462 QALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521
            A N++E MP++PN  +W T L AC +H+     E+V + L+     +   YVLLSN+YA
Sbjct: 477 LAKNLIEEMPIEPNDVIWRTFLNACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYA 536

Query: 522 DAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
             GMW+   R+R MM+++KI+K  G S IE+DG + EF+
Sbjct: 537 SNGMWKDVRRVRTMMKEKKIEKLPGCSWIELDGRVHEFL 575


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/571 (37%), Positives = 325/571 (56%), Gaps = 39/571 (6%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           L N   SL  +S+   H L +      N L++    ++   ++ T      MD A ++F+
Sbjct: 35  LLNCCSSLPDLSRI--HALVVTNGCGQNLLLSTKLIITACCLAPT------MDYARKMFD 86

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
           Q+ + + ++ NT+IRGY  +   ++AL+ Y NM   GL  DNYT+PFV+++C VL  L E
Sbjct: 87  QMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALRE 146

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G E+H  +VK GF  DVFV + L+ MYS+ G       VF    ++++VSW  V+ G+V+
Sbjct: 147 GKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQ 206

Query: 191 CGEMGKAREVFDEM----PQKDAISW---------------SIMIDGYRKKKGDISSARI 231
                +   VF EM     Q +A++                  +I GY  K G       
Sbjct: 207 NRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLG------- 259

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
                   D+   N++I  Y K G++  A+ LF+ M  +N+ SW+ MI  Y Q+     A
Sbjct: 260 -----VDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANA 314

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           + LFR M  + V  D I+++  ISACA +GAL+ G+W+H  +KR  + +++ +  ALIDM
Sbjct: 315 VKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDM 374

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y KCG++D AR +F  +  ++V+S+  MI     +G GE+ALK F++M+ EG+  +   F
Sbjct: 375 YAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTF 434

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
             V  AC HSGL  EG + F+SM R   I P +EH +C+VDLL RAG L +A   ++ MP
Sbjct: 435 AAVFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMP 494

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           ++P++++WG LL +CR H N+ LAE+V E L  L       YVL+SNIYA+AG WE A R
Sbjct: 495 VEPDVSVWGALLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAAR 554

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
           +RK+M +R++KK  G S++E++     F+SG
Sbjct: 555 LRKLMEERELKKIPGHSLVEVNRRFHTFLSG 585


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/605 (34%), Positives = 336/605 (55%), Gaps = 44/605 (7%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
            +P ++LL        + QI + +  + L    F  S+L+       + ++  A  LF+ 
Sbjct: 25  NHPHLNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHS 84

Query: 72  IYQ--PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV 129
           I+   PN ++ NT+IR ++ +  P  +L  +  M   GL  +++T+P + K+C       
Sbjct: 85  IHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATH 144

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
           E  ++H   +K+       V   LI MYS+ G +  AR VF+ S ++D VS+  ++ G+V
Sbjct: 145 EAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYV 204

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGY--------------RKKKGDISSARILF-- 233
             G +  AR +FDE+P KD +SW+ MI GY              R ++ D+S  +     
Sbjct: 205 SEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVS 264

Query: 234 -----EHMPIKDLISW-----------------NSMIDGYAKIGDLVAAQQLFNEMPERN 271
                 H+   +L  W                 N+++D Y+K G++  A++LF+ M +++
Sbjct: 265 VLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKD 324

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV 331
           V  W+ MI GY      +EAL LF  ML + V P+ ++ +  + ACA +GALDLGKW+H 
Sbjct: 325 VILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHA 384

Query: 332 F----MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
           +    +K +    ++ + T++I MY KCG ++ A ++F SM  +++ S+N MI+GL MNG
Sbjct: 385 YIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNG 444

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
             E AL  F +M  EG   DD+ F+GVL AC+ +G    G+R F SM +  GI PKL+HY
Sbjct: 445 HAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHY 504

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
            C++DLL+R+G+ ++A  ++ +M M+P+ A+WG+LL ACR H  V   E V E L EL+ 
Sbjct: 505 GCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEP 564

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDV 567
           ++ G YVLLSNIYA AG W+   +IR  +  + +KK  G + IEIDG + EF+ G+ F  
Sbjct: 565 ENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHP 624

Query: 568 QSEEL 572
           QSE +
Sbjct: 625 QSENI 629


>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
          Length = 921

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/485 (39%), Positives = 303/485 (62%), Gaps = 7/485 (1%)

Query: 93  PQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNG 152
           P+ AL+ +  M R+    D++TY F++KA     G+     +H  VVK+G + D FV N 
Sbjct: 421 PRDALAAFSAMPRR----DSFTYSFLIKALSA-AGVAPVRAVHSHVVKLGSVEDTFVGNA 475

Query: 153 LIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISW 212
           LI  YSK G    AR VF+    +D+VSWN  +   V  GE+   R++FDEMP+KD +SW
Sbjct: 476 LIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSW 535

Query: 213 SIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
           + ++DGY  K G++ +A  LF+ MP ++++SW++M+ GY K GDL  A+ +F++MP +N+
Sbjct: 536 NTILDGY-TKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNL 594

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
            +W+IM+   AQ G   EA  LF +M    V  DV +V+  ++ACA+ G+L LGK IH +
Sbjct: 595 VTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRY 654

Query: 333 MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNGFGEE 391
           +++  +     V  ALIDM+ KCG ++ A  +F + T +K+ +S+N +I G  M+G G++
Sbjct: 655 VRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDK 714

Query: 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
           AL+ FAQM+ +G   D +  + VL AC+H G   EG R F +M+R  GI P++EHY C++
Sbjct: 715 ALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMI 774

Query: 452 DLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511
           DLL R G +++A+++++SMP +PN  +WG+LL ACR H+NV  AE+ V  L +L+  + G
Sbjct: 775 DLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAG 834

Query: 512 LYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEE 571
            Y +LSNIYA+AG W    + R  M+    +K  G S +E++    EF  G+     S++
Sbjct: 835 NYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQ 894

Query: 572 LELVI 576
           +  ++
Sbjct: 895 ISEMV 899



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 98/238 (41%), Gaps = 12/238 (5%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A  +F+++   N      M+    Q     +A   +  MK   + +D      +L 
Sbjct: 578 DLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILA 637

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI-KDLV 179
           AC     L  G  IH  V K        V N LI M+ KCG +  A  VF+   + KD V
Sbjct: 638 ACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSV 697

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEH 235
           SWN ++ GF   G   KA E+F +M Q+    DA++  I +       G +   R  F +
Sbjct: 698 SWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTM-INVLSACTHMGFVDEGRRHFSN 756

Query: 236 MP-----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
           M      +  +  +  MID   + G +  A  L   MP E N   W  ++     H N
Sbjct: 757 MERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKN 814


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/574 (35%), Positives = 341/574 (59%), Gaps = 18/574 (3%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
            SL+  +     + QI A+L    L    F +++L+ + +S   +    A ++F+ + +P
Sbjct: 25  ASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITF--ARQVFDDLPRP 82

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
             +  N +IRGY+++++ Q AL  Y NM+   +  D++T+P +LKAC  L  L  G  +H
Sbjct: 83  QIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVH 142

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI--KDLVSWNLVLRGFVECGE 193
            +V ++GF  DVFV NGLI +Y+KC  +G AR+VFEG  +  + +VSW  ++  + + GE
Sbjct: 143 AQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGE 202

Query: 194 MGKAREVFDEMPQKDA-ISWSIMIDGYRK-------KKGDISSARILFEHMPIKD--LIS 243
             +A E+F  M + D    W  ++            K+G    A ++   + I+   LIS
Sbjct: 203 PMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLIS 262

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
            N+M   YAK G +  A+ LF++M   N+  W+ MI GYA++G  +EA+ +F EM+ + V
Sbjct: 263 LNTM---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDV 319

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
           RPD IS+  AISACAQVG+L+  + ++ ++ RS    D+ + +ALIDM+ KCGS++ AR 
Sbjct: 320 RPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARL 379

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           +F     ++V+ ++ MI G G++G   EA+  +  ME  G+  +D+ FLG+L+AC+HSG+
Sbjct: 380 VFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGM 439

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             EG+  F  M  H  I P+ +HY+C++DLL RAG L+QA  +++ MP++P + +WG LL
Sbjct: 440 VREGWWFFNLMADH-KINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALL 498

Query: 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
            AC+ H++V L E   + L  +   + G YV LSN+YA A +W+    +R  M+++ + K
Sbjct: 499 SACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNK 558

Query: 544 ETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           + G S +E+ G ++ F  G+    + EE+E  ++
Sbjct: 559 DVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVE 592


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/582 (36%), Positives = 326/582 (56%), Gaps = 42/582 (7%)

Query: 33  AQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSS 91
           AQ+    L    + LS+LL + + SP+   +  A  +F    +PN  + NTM+RG   SS
Sbjct: 3   AQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASSS 62

Query: 92  NPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVN 151
           +    L  YV M   G + + YT+PF+LK+C       EG +IH +V+K+G   D +   
Sbjct: 63  DLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHT 122

Query: 152 GLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAIS 211
            LI MY++ G +  AR VF+ S  +D+VS   ++ G+   G++  AR+VFD + ++D +S
Sbjct: 123 SLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVS 182

Query: 212 WSIMIDGYRKKKGDISSARILFE--------------------------------HMPIK 239
           W+ MI GY +  G   +  +  E                                H  + 
Sbjct: 183 WNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVD 242

Query: 240 DLISW-------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
           D   +       N+ I  Y+K GD+  A  LF  +  ++V SW+ +I GY      KEAL
Sbjct: 243 DHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEAL 302

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM-KRSR-ITMDMIVQTALID 350
            LF+EML  G  P+ ++++  + ACA +GA+D+G+WIHV++ KR + +T    ++T+LID
Sbjct: 303 LLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLID 362

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           MY KCG ++ A ++F SM  K++ S+N MI G  M+G    A   F++M   GI  DD+ 
Sbjct: 363 MYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDIT 422

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
            +G+L ACSHSGL   G  IF+S+ +   I PKLEHY C++DLL  AG  ++A  I+  M
Sbjct: 423 LVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMM 482

Query: 471 PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530
           PM+P+  +W +LL AC+ H N+ LAE   + L+E++ ++ G YVLLSNIYA AG WE   
Sbjct: 483 PMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVA 542

Query: 531 RIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           RIR+++  + +KK  G S IEID  + EF+ G+    QS E+
Sbjct: 543 RIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREI 584


>gi|224071603|ref|XP_002303536.1| predicted protein [Populus trichocarpa]
 gi|222840968|gb|EEE78515.1| predicted protein [Populus trichocarpa]
          Length = 596

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/542 (37%), Positives = 306/542 (56%), Gaps = 35/542 (6%)

Query: 43  EPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVN 102
           EP  + Q+L+S  +           +   +  P+++     IR ++Q    ++AL  YV 
Sbjct: 55  EPLLVRQILLSARNNPRRISQYVHSILYHLPHPDSFSWGWAIRYFSQQGQFKEALYLYVQ 114

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           M+R+GL    +     L+A       + G  IH E  K GF   V+V   L+ +YSK G 
Sbjct: 115 MQRQGLCPSTFAVSSALRAYARTTYKMGGMSIHAESYKYGFSNCVYVQTALVDLYSKLGD 174

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK 222
           M  A+ VF+    K++VSWN +L G ++ G + +A+ VFD++ +KD ISW+ MI GY  K
Sbjct: 175 MNTAQKVFDELAEKNVVSWNSILSGHLKSGNLLEAQRVFDQISKKDVISWNSMISGY-AK 233

Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
            GD+  A +LF+ MP K+  SWN++I GY   GD+ +A + F+ MPERN  SW  MI GY
Sbjct: 234 IGDMDRACVLFQQMPEKNYSSWNALISGYVNCGDIKSAWRFFDAMPERNSVSWITMIAGY 293

Query: 283 -------------------------------AQHGNPKEALYLFREML--CQGVRPDVIS 309
                                          AQ+  P++AL+LF EML     ++PD ++
Sbjct: 294 SKCGDVDSASKLFDQIAKKDLLTFNAMISCFAQNSQPRKALWLFSEMLKAYANIQPDQMT 353

Query: 310 VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369
           +   +SAC+Q+G L    WI  ++      +D  + TAL+D+Y KCGS+D+A  +F+ + 
Sbjct: 354 LASVVSACSQLGDLRFASWIESYVNDLGTEIDDQLVTALLDLYAKCGSVDKAYELFHGLN 413

Query: 370 KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR 429
           KK+V++Y+ MI+G G+NG   +A+K F  M    I  +   F G+L AC+H+GL  EGYR
Sbjct: 414 KKDVVAYSAMISGCGINGKVADAIKLFDMMVDAQIHPNLATFTGLLTACNHAGLVKEGYR 473

Query: 430 IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
            F SMK H G+ P  +HY+ +VDLL RAG L+ A  +++SMPM+P+  +WG LLLAC  H
Sbjct: 474 FFSSMKDH-GLVPSTDHYAIMVDLLGRAGRLQDAYELIKSMPMQPHSGVWGALLLACNVH 532

Query: 490 QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSV 549
            NV L E+  +    L+ +    Y LL+NIY+ AG W+   R+RK+ +++K+ K +G S 
Sbjct: 533 NNVELGEIAAQHCFNLETNATAYYSLLANIYSSAGRWDDVGRLRKLWKEKKLAKLSGCSW 592

Query: 550 IE 551
            E
Sbjct: 593 TE 594


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/599 (34%), Positives = 332/599 (55%), Gaps = 44/599 (7%)

Query: 4   LAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMD 63
           LA A       ++ LL+  ++  H+ QI A L  +         SQL+ S  + +  + D
Sbjct: 2   LAPAAVVASRHVLELLRQCRSIQHLDQIHAHLVVHGFSDVSSVASQLIASYCTLSAGDRD 61

Query: 64  ----QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVL 119
                A RLF++I +P+ +M+NT++R Y+ S  PQ+AL  +  + ++G+L + +T PFVL
Sbjct: 62  GGLCHARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVL 121

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           KAC  +  +      HG VVK+GF+  +FV N L+  ++  G +  +R  F     +++V
Sbjct: 122 KACTTVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVV 181

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQK-------------------------------- 207
           SWN ++ G+ + GE+ +A  +F EM  +                                
Sbjct: 182 SWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHM 241

Query: 208 -------DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAA 260
                  D I  + ++D Y  K GD+  A   F+ MPIK++++W SM+   AK G + A 
Sbjct: 242 LVSGSRVDRILGNALLDMY-GKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAV 300

Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
           +  F +MPERN+ SW+ MI  Y Q G   E L L+  M   G+ PD  ++ G +SAC Q 
Sbjct: 301 RDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQN 360

Query: 321 GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMI 380
           G L  GK IH +++ +     + +  +L+DMY +CG +D A  +F  M  KNVIS+NV+I
Sbjct: 361 GDLASGKMIHCYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVII 420

Query: 381 AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGI 440
             L M+G  +E +  F  M ++    D++ F+G+L ACSH GL   G   F++M R   +
Sbjct: 421 GALAMHGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNV 480

Query: 441 EPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVE 500
           EP++EHY C+VDLL R G L +A+N+++ M +KP++ +WG LL ACR H NV + ++V++
Sbjct: 481 EPEVEHYGCMVDLLGRRGHLAKAVNLIKDMSIKPDVVVWGALLGACRIHGNVEIGKLVIK 540

Query: 501 GLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEF 559
            L+EL+    GL+VL+ N++ +   WE   ++RK+M+++  KK+ G S IE+   I EF
Sbjct: 541 QLLELEGITGGLFVLICNLFYETNQWEDMKKLRKLMKEQGTKKDMGVSSIEVKNIIHEF 599


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 224/611 (36%), Positives = 335/611 (54%), Gaps = 50/611 (8%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLM--SLTSPNTLNMDQAERL 68
           + +PL+SLL+   +   +LQ+ A LT   L    F  S+LL   +L++P  L    A   
Sbjct: 34  VTHPLLSLLESCASFRRLLQLHALLTVTGLAAHRFPASRLLAFCALSTPPRLAHAAAILA 93

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM-- 126
                 PN YM  TM+RG+ ++  P +AL  +  + R  L  D  T+ F +KA       
Sbjct: 94  RASP-GPNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAES 152

Query: 127 ---GLVEGTE-IHGEVVKMGFLCD-VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
              G   G E IH   +K GF+ + V V N L+  Y+    +  A  VF+    +D+VSW
Sbjct: 153 EHGGTPSGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSW 212

Query: 182 NLVLRGFVECGEMGKAREVFDEM--------------------PQKDAISWSIMIDGYRK 221
             ++ G+   G   +A  +F  M                     Q   +++ IM+  Y  
Sbjct: 213 TTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVT 272

Query: 222 -------------------KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQ 262
                              K G +  AR +F+ M +KD+ SW SM++ YAK GDL +A+Q
Sbjct: 273 EGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQ 332

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           LF +MP RNV SWS MI  Y+Q   P+EA++LFREM+  GV P   +++  +SACAQ+G 
Sbjct: 333 LFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGC 392

Query: 323 LDLGKWIHV-FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
           LDLG+WI+  ++  ++I + + +  ALIDM+ KCG + EA ++F  M ++NV+S+N MI 
Sbjct: 393 LDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIM 452

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
              ++G  EEA++ F Q++ E I  D + FLG+L +CSHSGL +EG R F+ M+    IE
Sbjct: 453 AHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIE 512

Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEG 501
           P++EHY+C++DLL + G LE+A  +   MPM+ + A WG LL ACR H NV +   V + 
Sbjct: 513 PRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACVADK 572

Query: 502 LVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
           LVEL   D G+YVL+S IYA    W+    +R  MR R +KK  G S IE++G   +F+ 
Sbjct: 573 LVELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNPGCSSIEVEGKFHDFLV 632

Query: 562 GEIFDVQSEEL 572
            ++    SEE+
Sbjct: 633 ADVSHACSEEI 643


>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/523 (36%), Positives = 312/523 (59%), Gaps = 34/523 (6%)

Query: 94  QKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGL 153
           ++AL  Y  MK   +  +++T+ F+LK       L +G  IHGE++K+GF   VFV N L
Sbjct: 56  KEALRVYSRMKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSL 115

Query: 154 IGMYSKCG-HMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISW 212
           +G Y+ C  ++G A  VFE    +D++SWN ++  ++  GE+  A  + D+MP+++ ++W
Sbjct: 116 LGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTW 175

Query: 213 SIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
           + ++ G   K G++  A  +FE MP+++ +SWNSMI GY +IGD+ AAQ +F +MPE+ V
Sbjct: 176 NSVVCGL-SKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTV 234

Query: 273 FSWSIMIDGYAQHGNPK-------------------------------EALYLFREMLCQ 301
            SW+ MI GYA +G+ K                               +AL +F  ML  
Sbjct: 235 VSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLIN 294

Query: 302 G-VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
           G  RPD  +++  +SACA +G+L+ GKWI+ ++K++++ + + +  ALIDM+ KCG ++ 
Sbjct: 295 GECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVEN 354

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           A+ +F+ M+K+ +I++  M++GL +NG   EA+  F +M  EG   DD+IF+ VL AC+H
Sbjct: 355 AKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTH 414

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
            GL  EG R+F  M +  GI+P++EHY C+VDLL RAG+LE+A+     M +KPN  +W 
Sbjct: 415 GGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFTARMHLKPNAVIWA 474

Query: 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540
           TLL  C+ H N  L + V E +++ +  +     L+SN+ A  G WE  L  R  MR+++
Sbjct: 475 TLLFCCKIHGNGDLLKSVTEKIMDQEPSNPSYLTLVSNLSASFGRWEDVLSFRVAMRQQR 534

Query: 541 IKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTT 583
           ++K  G S I++   + EF++ +   VQ +E+   +  +   T
Sbjct: 535 MEKVPGCSSIQVGNRVHEFLAKDTRHVQRKEIYRALSHYKNAT 577



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 103/238 (43%), Gaps = 12/238 (5%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKG-LLVDNYTYPFVL 119
           ++  AE +FN +   N    N MI GY  +    +AL  + +M   G    D  T   +L
Sbjct: 249 DLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISIL 308

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
            AC  L  L  G  I+  + K      + + N LI M++KCG +  A+ VF     + ++
Sbjct: 309 SACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCII 368

Query: 180 SWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARILFEH 235
           +W  ++ G    G+  +A  +FD+M     + D + + I +       G +   + +F+ 
Sbjct: 369 TWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIF-IAVLSACTHGGLVEEGKRVFDQ 427

Query: 236 M----PIKDLIS-WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
           M     IK  I  +  M+D   + G L  A +    M  + N   W+ ++     HGN
Sbjct: 428 MVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFTARMHLKPNAVIWATLLFCCKIHGN 485


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/565 (36%), Positives = 326/565 (57%), Gaps = 40/565 (7%)

Query: 1   MKTLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL 60
           M  L A K + K+      Q  K    + QI      + + T+ + + +L++      + 
Sbjct: 167 MNALFAWKITRKD------QYCKNLRALTQIHGFFIKSGVDTDSYFIGKLILHCAISISD 220

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV-DNYTYPFVL 119
            +  A RL     +P+ +M NT++RGY++S  P  +++ +V M RKG +  D++++ FV+
Sbjct: 221 ALPYARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVV 280

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           KA      L  G ++H + +K G    +FV   LIGMY                      
Sbjct: 281 KAAANFRSLRTGFQMHCQALKHGLDSHLFVATTLIGMYG--------------------- 319

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239
                     ECG +G AR+VFDEMPQ + ++W+ ++    +   D+S AR +F+ M ++
Sbjct: 320 ----------ECGCVGFARKVFDEMPQPNLVAWNAVVTACFRG-NDVSGAREIFDKMLVR 368

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           +  SWN M+ GY K G+L  A+++F+EMP R+  SWS MI G++ +G+  E+   FRE+L
Sbjct: 369 NHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFRELL 428

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
              +RP+ +S+ G +SAC+Q GA + GK +H F+++S  +  + V  ALIDMY +CG++ 
Sbjct: 429 RAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVP 488

Query: 360 EARRIFYSMT-KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
            AR +F  M  K++++S+  MIAGL M+G GEEA++ F +M   G+  D++ F+ +L AC
Sbjct: 489 MARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYAC 548

Query: 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
           SH+GL  EG   F  MKR   IEP +EHY C+VDL  R+G+L++A + +  MP+ P   +
Sbjct: 549 SHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIV 608

Query: 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
           W TLL AC +H N+ LAE V + L EL  ++ G  VLLSN+YA AG W+    IRK M  
Sbjct: 609 WRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKWKDVASIRKSMIV 668

Query: 539 RKIKKETGRSVIEIDGNIKEFVSGE 563
           ++IKK T  S++E+   + +F + E
Sbjct: 669 QRIKKITAWSLVEVGKTMYKFTACE 693


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/608 (33%), Positives = 344/608 (56%), Gaps = 39/608 (6%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
            +S+L + KTT    Q+ +Q  T  +   P    +L +   S    ++  A +LF +I +
Sbjct: 37  FISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPE 96

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG-LVEGTE 133
           P+  + N MI+G+++     + +  Y+NM ++G+  D++T+PF+L       G L  G +
Sbjct: 97  PDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKK 156

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           +H  VVK G   +++V N L+ MYS CG M  AR VF+    +D+ SWNL++ G+    E
Sbjct: 157 LHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKE 216

Query: 194 MGKAREVFDEMPQK----DAISWSIMIDGYRKKK-------------------------- 223
             ++ E+  EM +      +++  +++    K K                          
Sbjct: 217 YEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENA 276

Query: 224 --------GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
                   G++  A  +F  M  +D+ISW S++ GY + G+L  A+  F++MP R+  SW
Sbjct: 277 LVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISW 336

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
           +IMIDGY + G   E+L +FREM   G+ PD  +++  ++ACA +G+L++G+WI  ++ +
Sbjct: 337 TIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDK 396

Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
           ++I  D++V  ALIDMY KCG  ++A+++F+ M +++  ++  M+ GL  NG G+EA+K 
Sbjct: 397 NKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKV 456

Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           F QM+   I  DD+ +LGVL AC+HSG+  +  + F  M+    IEP L HY C+VD+L 
Sbjct: 457 FFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLG 516

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515
           RAG +++A  I+  MPM PN  +WG LL A R H +  +AE+  + ++EL+ D+  +Y L
Sbjct: 517 RAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYAL 576

Query: 516 LSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELV 575
           L NIYA    W+    +R+ +    IKK  G S+IE++G   EFV+G+   +QSEE+ + 
Sbjct: 577 LCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMK 636

Query: 576 IQSFVKTT 583
           ++   + +
Sbjct: 637 LEELAQES 644


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/608 (33%), Positives = 344/608 (56%), Gaps = 39/608 (6%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
            +S+L + KTT    Q+ +Q  T  +   P    +L +   S    ++  A +LF +I +
Sbjct: 37  FISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPE 96

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG-LVEGTE 133
           P+  + N MI+G+++     + +  Y+NM ++G+  D++T+PF+L       G L  G +
Sbjct: 97  PDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKK 156

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           +H  VVK G   +++V N L+ MYS CG M  AR VF+    +D+ SWNL++ G+    E
Sbjct: 157 LHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKE 216

Query: 194 MGKAREVFDEMPQK----DAISWSIMIDGYRKKK-------------------------- 223
             ++ E+  EM +      +++  +++    K K                          
Sbjct: 217 YEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENA 276

Query: 224 --------GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
                   G++  A  +F  M  +D+ISW S++ GY + G+L  A+  F++MP R+  SW
Sbjct: 277 LVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISW 336

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
           +IMIDGY + G   E+L +FREM   G+ PD  +++  ++ACA +G+L++G+WI  ++ +
Sbjct: 337 TIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDK 396

Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
           ++I  D++V  ALIDMY KCG  ++A+++F+ M +++  ++  M+ GL  NG G+EA+K 
Sbjct: 397 NKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKV 456

Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           F QM+   I  DD+ +LGVL AC+HSG+  +  + F  M+    IEP L HY C+VD+L 
Sbjct: 457 FFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLG 516

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515
           RAG +++A  I+  MPM PN  +WG LL A R H +  +AE+  + ++EL+ D+  +Y L
Sbjct: 517 RAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYAL 576

Query: 516 LSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELV 575
           L NIYA    W+    +R+ +    IKK  G S+IE++G   EFV+G+   +QSEE+ + 
Sbjct: 577 LCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMK 636

Query: 576 IQSFVKTT 583
           ++   + +
Sbjct: 637 LEELAQES 644


>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 601

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/561 (37%), Positives = 333/561 (59%), Gaps = 17/561 (3%)

Query: 17  SLLQISKTTTH--ILQILAQLTTNDLITEPFTLSQLLMSLTSP--------NTLNMDQAE 66
           ++LQ SKT T   +L+I A +  N L      L++ + S TS         + +++ Q  
Sbjct: 14  NILQSSKTKTFKTLLEIHAFILRNSLHNNLHLLTKFISSSTSLALSTPRRNDAVSIVQHA 73

Query: 67  RLFNQIYQP---NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL-VDNYTYPFVLKAC 122
           RLF     P   + ++ NT+I  +          + Y    +       +YT+  +LK C
Sbjct: 74  RLFFNHTPPHKCDEFLCNTIINAHFSLRQFNHGFTLYNQFSKDCFFRPSSYTFTLILKGC 133

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
            V     +G +IHG V+K  F  D++V   L+ MY K G +G AR VF+   ++ LVSW 
Sbjct: 134 SVSDAKRQGFQIHGVVLKNWFCLDLYVGTSLVDMYVKFGDVGFARKVFDEMSVRSLVSWT 193

Query: 183 LVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLI 242
            V+ G+  CG+M +AR++FD M  +D  ++++MIDGY  K G +  AR LF+ M +K++I
Sbjct: 194 AVIVGYARCGDMVEARKLFDGMVDRDVAAFNVMIDGY-VKMGRMDLARDLFDKMRVKNVI 252

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ- 301
           SW SM+ GY++ GD+  A+ LF+ MPE+NV SW+ MI GY Q+G   +AL LF EM    
Sbjct: 253 SWTSMVHGYSEDGDVDEARFLFDCMPEKNVLSWNAMIRGYCQNGRSHDALKLFCEMRGNV 312

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
            V  + ++V+  + A A + ALDLG W+H F++R+++   + V  AL+DMY KCG + +A
Sbjct: 313 DVEMNEVTVVSVLPAVADLSALDLGGWVHGFVQRNQLDGSVHVCNALVDMYAKCGEIGKA 372

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
           + +F  MT+K+  S+N +I G G+NG  +EAL+ FA M  EG   + +    VL AC+H 
Sbjct: 373 KLVFEEMTEKDTGSWNALINGYGVNGCAKEALEVFAMMLREGFEPNQITMTSVLSACNHC 432

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           GL  EG R F++M+R  GI P++EHY C++DLL RAG L++A  ++++MP  PN  +  +
Sbjct: 433 GLVEEGRRCFEAMERF-GIVPQIEHYGCMIDLLGRAGRLDEAEKLIQAMPYDPNEIILTS 491

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
            L AC   ++V+ AE +++  V+++ +  G YV+L N+YA    W     +++MM+KR  
Sbjct: 492 FLFACCYFEDVSRAERILKVAVKMEKEGAGDYVMLRNLYATERRWADVEDVKEMMKKRGS 551

Query: 542 KKETGRSVIEIDGNIKEFVSG 562
            KE   SVIE+DG  +EFV+G
Sbjct: 552 NKEVAWSVIEVDGRFREFVAG 572


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/549 (36%), Positives = 319/549 (58%), Gaps = 48/549 (8%)

Query: 53  SLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDN 112
           S T  N L +DQ ++L   I + + + H   +      S+P+ AL+ Y  M++  + VD+
Sbjct: 51  SFTPNNHLCLDQTQQLHAHITRTH-FNHAQQVSFSPFESHPRYALNTYTYMRKLDIEVDS 109

Query: 113 YTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG 172
           +  P VLKAC  +     G EIHG  VK G + DVFVVN L+ MYS+CG +  AR +F+ 
Sbjct: 110 FIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDK 169

Query: 173 SEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK----KKGDISS 228
              +D+VSW+ ++R ++          +F    Q+  +SW+ MI GY +    ++G+   
Sbjct: 170 MSERDVVSWSTMIRAYIT---------LFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLF 220

Query: 229 ARILFEHMPIKDLISWN----------------------------------SMIDGYAKI 254
            R++ E++   D+   +                                  +++D Y K 
Sbjct: 221 VRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKC 280

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
           G++ +A+ +F+ M  ++V +W+ MI  YAQ      A  LF +M   GVRP+ ++++  +
Sbjct: 281 GEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLL 340

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
           S CA  GALD+GKW H ++ +  + +D+I++TALIDMY KCG +  A+R+F     +++ 
Sbjct: 341 SLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDIC 400

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434
           ++NVM+AG GM+G+GE+ALK F +MET G+  +D+ F+G L ACSH+GL  EG  +F+ M
Sbjct: 401 TWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKM 460

Query: 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTL 494
               G+ PK+EHY C+VDLL RAG L++A  ++ESMP+ PN+A+WG +L AC+ H+N  +
Sbjct: 461 IHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNM 520

Query: 495 AEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDG 554
            E+    L+ L+  +CG  VL+SNIYA A  W     +RK ++   IKKE G S IE++G
Sbjct: 521 GELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNG 580

Query: 555 NIKEFVSGE 563
            + +F  G+
Sbjct: 581 LVHDFKMGD 589


>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Vitis vinifera]
          Length = 550

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/539 (37%), Positives = 312/539 (57%), Gaps = 34/539 (6%)

Query: 17  SLLQISKTTTHIL-QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
           S L  S TT   L QI A +      +    L +L+ + +   +  M  A +LF  I +P
Sbjct: 17  SQLWRSCTTIGTLKQIHASMIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEP 76

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           +T+M NTMIRG  QS +P  A+S Y  M+   +  D +T+PFVLKAC  L  +  G  +H
Sbjct: 77  DTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVH 136

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
           G V ++GF  + FV N LI  ++ CG                               ++ 
Sbjct: 137 GRVFRLGFESNTFVRNTLIYFHANCG-------------------------------DLA 165

Query: 196 KAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIG 255
            AR +FD   ++D ++WS +  GY  ++G++  AR LF+ MP+KDL+SWN MI GYAK G
Sbjct: 166 VARALFDGSAKRDVVAWSALTAGY-ARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRG 224

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
           ++ +A++LF+E+P+R+V +W+ MI GY   G+ ++AL +F EM   G  PD ++++  +S
Sbjct: 225 EMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLS 284

Query: 316 ACAQVGALDLGKWIHVFMKRSRI-TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
           AC  +G LD G+ IH  +       + +++  ALIDMY KCGS+  A  +F  M +K+V 
Sbjct: 285 ACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVS 344

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434
           ++N ++ GL  +G  E+++  F +M    I  D++ F+GVL+ACSH+G   EG + F  M
Sbjct: 345 TWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLM 404

Query: 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTL 494
           +    IEP + HY C+VDLL RAG L +A + +++M ++PN  +W TLL ACR H NV L
Sbjct: 405 RDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVEL 464

Query: 495 AEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEID 553
                  L++++ D+ G YVLLSNIYA  G W+   ++RK+M    ++KE G S+IE D
Sbjct: 465 GRRANMQLLKMRHDESGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRKEAGCSLIEGD 523


>gi|147828480|emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera]
          Length = 841

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/528 (38%), Positives = 300/528 (56%), Gaps = 38/528 (7%)

Query: 43  EPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVN 102
           EP    Q+L+S ++ +         + +    P+++     IR  TQ    ++A + YV 
Sbjct: 32  EPILARQILJSASNYSATVAQYVHSVLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYVQ 91

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCD---VFVVNGLIGMYSK 159
           M+R GL    +     LKAC  +   + G  IHG+V K GF      ++V   L+  Y K
Sbjct: 92  MQRWGLWPTTFALSSALKACARIAYRMGGLSIHGQVQKFGFSGGGDGIYVETALVDFYCK 151

Query: 160 CGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY 219
            G M  AR +F+    +++VSWN +L G+++ G++  A+ VFDE+PQKD ISW+ MI GY
Sbjct: 152 LGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGY 211

Query: 220 RKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMI 279
             + GD+  A  LF+ MP ++  SWN+MI GY + GD+ +A+  F+ MP+ N  SW  MI
Sbjct: 212 -ARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSARSFFDAMPQXNNVSWMTMI 270

Query: 280 DGY-------------------------------AQHGNPKEALYLFREMLCQ--GVRPD 306
            GY                               AQ+  PKEAL LF  ML     V+PD
Sbjct: 271 SGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPD 330

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
            +++   ISAC+Q+G L  G WI  +M+R  I MD  + TAL+D+Y KCGS+D+A  +F+
Sbjct: 331 EMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFH 390

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            + KK++++Y  MI G G+NG   +A+K F +M    I  + + F+G+L A +H+GL  E
Sbjct: 391 GLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNLITFIGLLTAYNHAGLVEE 450

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           GYR F SMK++  + P ++HY  +VDLL RAG L++AL +++SMPM+P+  +WG LLLAC
Sbjct: 451 GYRCFTSMKKY-NLVPSVDHYGIMVDLLGRAGRLQEALELIKSMPMQPHAGVWGALLLAC 509

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           R H NV   E+  +   EL+ D  G   LLSNIYA    W+   R+RK
Sbjct: 510 RLHNNVEFGEIAAQHCFELEPDTTGYXSLLSNIYASGERWDDVKRLRK 557


>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Glycine max]
          Length = 518

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/528 (37%), Positives = 314/528 (59%), Gaps = 36/528 (6%)

Query: 27  HILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLN--MDQAERLFNQIYQPNTYMHNTMI 84
           H L I+  LT+N        L+   MS+  PN  +  +  A ++F QI QP+T+M NT I
Sbjct: 21  HALMIVNGLTSNVGFLRKLVLTTA-MSMVGPNATSAVIRYALQMFAQIPQPDTFMWNTYI 79

Query: 85  RGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFL 144
           RG +QS +P  A++ Y  M ++ +  DN+T+PFVLKAC  L  +  G+ +HG V+++GF 
Sbjct: 80  RGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLFWVNTGSAVHGRVLRLGFG 139

Query: 145 CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM 204
            +V V N L+  ++KCG                               ++  A ++FD+ 
Sbjct: 140 SNVVVRNTLLVFHAKCG-------------------------------DLKVATDIFDDS 168

Query: 205 PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
            + D ++WS +I GY  ++GD+S AR LF+ MP +DL+SWN MI  Y K G++ +A++LF
Sbjct: 169 DKGDVVAWSALIAGY-AQRGDLSVARKLFDEMPKRDLVSWNVMITVYTKHGEMESARRLF 227

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
           +E P +++ SW+ +I GY      +EAL LF EM   G  PD ++++  +SACA +G L+
Sbjct: 228 DEAPMKDIVSWNALIGGYVLRNLNREALELFDEMCGVGECPDEVTMLSLLSACADLGDLE 287

Query: 325 LGKWIHV-FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383
            G+ +H   ++ ++  +  ++  AL+DMY KCG++ +A R+F+ +  K+V+S+N +I+GL
Sbjct: 288 SGEKVHAKIIEMNKGKLSTLLGNALVDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGL 347

Query: 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443
             +G  EE+L  F +M+   +  D++ F+GVL ACSH+G   EG R F  MK    IEP 
Sbjct: 348 AFHGHAEESLGLFREMKMTKVCPDEVTFVGVLAACSHAGNVDEGNRYFHLMKNKYKIEPT 407

Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLV 503
           + H  C+VD+L RAG L++A N + SM ++PN  +W +LL AC+ H +V LA+   E L+
Sbjct: 408 IRHCGCVVDMLGRAGLLKEAFNFIASMKIEPNAIVWRSLLGACKVHGDVELAKRANEQLL 467

Query: 504 ELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
            ++ D  G YVLLSN+YA  G W+ A  +RK+M    + K  G S +E
Sbjct: 468 RMRGDQSGDYVLLSNVYASQGEWDGAENVRKLMDDNGVTKNRGSSFVE 515


>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 537

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/562 (37%), Positives = 317/562 (56%), Gaps = 63/562 (11%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           ++SLL    T  HI QI + LT +  + +PF   +++         ++  A  LF  + +
Sbjct: 16  VLSLLDQCVTMAHIKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPR 75

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
             +++ NTM+R +T    P   LS Y  M   G L +NYT+ F+L+AC  L  L  G  +
Sbjct: 76  RTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILL 135

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           H + V++G+                              E  D V  N +L  +  C  M
Sbjct: 136 HAQAVRLGW------------------------------EAYDFVQ-NGLLHLYASCNCM 164

Query: 195 GKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKI 254
             AR +FD                     G ++           +D+++W ++I+GYAK 
Sbjct: 165 DSARRLFD---------------------GSVN-----------RDVVTWTAVINGYAKS 192

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
           G +V A+QLF+EMPE+N  SWS MI GYAQ G  +EAL LF +M   G RP+  +++GA+
Sbjct: 193 GQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGAL 252

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
           +ACA +GALD G+WIH ++ R+R+ +D I+ TALIDMY KCG ++ A R+F  M  ++V 
Sbjct: 253 TACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVF 312

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434
           ++  +I+GL  +G    A++ F +M+ EG+  +++ F+ +L ACS  GL  EG RIF+SM
Sbjct: 313 AFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSM 372

Query: 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTL 494
               GIEP ++HY CLVDLL RAG LE A  +V  MP++P+  + G LL ACR H +V L
Sbjct: 373 TNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVEL 432

Query: 495 AEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDG 554
            +  VE L E   D  G++VLLSN+YA A  WE   ++RK M ++K+KK  G S+IE+DG
Sbjct: 433 GKETVECLAERSLDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDG 492

Query: 555 NIKEFVSGEIFDVQSEELELVI 576
            + EFV+G++  V  +E+ L++
Sbjct: 493 AVFEFVAGDMSHVFMDEIVLLL 514


>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 606

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/523 (39%), Positives = 304/523 (58%), Gaps = 34/523 (6%)

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           + ++ N +I+ ++   +P++AL  +  M   G+ VD ++   VLKAC  L  +  G +IH
Sbjct: 78  DPFLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIH 137

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
           G + K G   D+F+ N LIG+Y KCG +G AR +F+    +D VS+N ++ G+V+CG + 
Sbjct: 138 GFLRKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSMINGYVKCGLIE 197

Query: 196 KAREVFDEMPQ--KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAK 253
            ARE+FD MP+  K+ ISW+ MI GY +    ++ A  LF  MP KDLISWNSMIDGY K
Sbjct: 198 SARELFDLMPREMKNLISWNSMISGYAQTSEGVNIASKLFAEMPEKDLISWNSMIDGYVK 257

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV---------- 303
            G +  A+ LF+ MP R+V + + MIDGYA+ G   +A  LF +M  + V          
Sbjct: 258 HGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGY 317

Query: 304 ----------------------RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
                                  PD  +++  +SA AQ+G L     +H+++   +  + 
Sbjct: 318 VQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLG 377

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
             +  ALIDMY KCGS+  A  +F  +  K++  +N MI GL ++G GE A     Q+E 
Sbjct: 378 GKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQIER 437

Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
             I  DD+ F+GVL ACSHSGL  EG   F+ M+R   IEP+L+HY C+VD+LSR+G +E
Sbjct: 438 LSIIPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIE 497

Query: 462 QALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521
            A N++E MP++PN  +W T L AC +H+     E+V + L+     +   YVLLSN+YA
Sbjct: 498 LAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYA 557

Query: 522 DAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEI 564
             GMW+   R+R MM++RKI+K  G S IE+DG + EF    I
Sbjct: 558 SFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFVDSI 600



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 104/232 (44%), Gaps = 10/232 (4%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV-DNYTYPFVLKAC 122
           QA+ LF+Q+   +   +N+M+ GY Q+    +AL  + +M+++  L  D  T   +L A 
Sbjct: 294 QAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAI 353

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
             L  L + T++H  +V+  F     +   LI MYSKCG +  A  VFEG E K +  WN
Sbjct: 354 AQLGRLSKATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWN 413

Query: 183 LVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK---KKGDISSARILFEHMPIK 239
            ++ G    G    A  +  ++ +   I   I   G        G +    + FE M  K
Sbjct: 414 AMIGGLAVHGLGESAFNMLLQIERLSIIPDDITFVGVLNACSHSGLVKEGLLCFELMRRK 473

Query: 240 DLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQH 285
             I      +  M+D  ++ G +  A+ L  EMP E N   W   +   + H
Sbjct: 474 HKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSHH 525


>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]
          Length = 614

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/595 (35%), Positives = 330/595 (55%), Gaps = 43/595 (7%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           + ++ L+   K +  + +I A+L T   I      ++++++        + +  R   + 
Sbjct: 14  SSIIQLVGSCKNSNDVGKIHARLITTGFIKNSNLTTKIVVAFADSRRPYLAEFARYVFRE 73

Query: 73  YQ---------PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           Y           + ++ N +I+ ++   +P++AL ++  M   G+ VD +++  VLKAC 
Sbjct: 74  YHVCSFAPGDVKDPFLWNLVIKSHSHGVDPRRALLWFCLMLENGISVDKFSFSLVLKACS 133

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            L  L  G +IHG + K G   D+F+ N LIG+Y KCG +G AR +F+    +D VS+N 
Sbjct: 134 RLGFLKGGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNS 193

Query: 184 VLRGFVECGEMGKAREVFDEMPQ--KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
           ++ G+++CG +  ARE+FD MP+  K+ ISW+ MI GY +    ++ A  LF  MP KDL
Sbjct: 194 MIDGYIKCGLIESARELFDLMPREMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDL 253

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
           ISWNS+I GY K G +  A+ LF+ MP R+V +W+ MIDGYA+ G   +A  LF +M  +
Sbjct: 254 ISWNSLIYGYVKHGRMEDAKDLFHVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHR 313

Query: 302 GV--------------------------------RPDVISVMGAISACAQVGALDLGKWI 329
            V                                 PD  +++  +SA AQ+G L     +
Sbjct: 314 DVVAYNSMMAGYVQNRHHMEALEIFSDMEKESHLTPDETTLVIVLSAIAQLGQLSKAMDM 373

Query: 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFG 389
           H+++   +  +   +  ALIDMY KCGS+ +A  +F  +  K++  +N MI GL ++G G
Sbjct: 374 HLYIVEKQFYLGGKLGVALIDMYSKCGSIQQAMCVFEGIENKSIDHWNAMIGGLAIHGLG 433

Query: 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449
           E A     ++E   I  D + F+GVL ACSHSGL  EG   F+ M+R   IEP+L+HY C
Sbjct: 434 ESAFNILLEIERRSIEPDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGC 493

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509
           +VDLLSR G +E A N++E MP++PN  +W T L AC +H+   + E+V + L+     +
Sbjct: 494 MVDLLSRCGSIELAKNLIEEMPIEPNDVIWRTFLTACNHHKEFEIGELVAKHLILQAGYN 553

Query: 510 CGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEI 564
              YVLLSN+YA  G W+    +R MM++RK++K  G S IE+DG + EF    I
Sbjct: 554 PSSYVLLSNMYASFGRWKDVRNVRTMMKERKLQKVPGCSWIELDGRVHEFFVDSI 608


>gi|345505212|gb|AEN99830.1| chlororespiratory reduction 4, partial [Brassica oleracea]
          Length = 590

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/583 (36%), Positives = 332/583 (56%), Gaps = 45/583 (7%)

Query: 23  KTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLN-----MDQAERLFNQIYQPNT 77
           KT+  + ++ A+L T  LI  P   ++++++  S +  +      + A  +F++ +  ++
Sbjct: 6   KTSHDLNKLHARLITTGLIKNPDLTTRIVLAFASASASSRRPFLAEFARCVFHEHHVSSS 65

Query: 78  ------YMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
                 ++ N +I+ ++   +P+KAL     M    + VD ++    LKAC  L  + EG
Sbjct: 66  GEVEDPFLWNVVIKSHSHGVDPRKALFLLCLMLESSVPVDKFSLSLALKACSRLGFVKEG 125

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
           T++HG ++K G   D+F+ N LIG+Y KCG +G AR VF+    +D VS+N ++ G+V+C
Sbjct: 126 TQVHGFLIKTGTWSDLFLQNCLIGLYIKCGFLGFARQVFDRMPERDSVSYNSMIDGYVKC 185

Query: 192 GEMGKAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMID 249
           G +  A E+FD MP  +++ I+W+ MI GY ++   +  A  LF+ MP KDLISWNSMI 
Sbjct: 186 GLVESAGELFDLMPREKRNLITWNSMIGGYAQRADGVDVAEKLFDEMPEKDLISWNSMIG 245

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV------ 303
           GY K G +  A+ LFN MP R+V +W+IMIDGY + G    A  LF +M  + V      
Sbjct: 246 GYVKHGRIEDAKGLFNVMPRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHRDVVAYNSM 305

Query: 304 --------------------------RPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337
                                      PD  S++  +SA AQ+G L     +H+++   +
Sbjct: 306 MSGYVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDMHLYIVEKQ 365

Query: 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFA 397
             +   +  ALIDMY KCGS+  A R+F  +  K++  +N MI GL ++G GE A     
Sbjct: 366 FPLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLF 425

Query: 398 QMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA 457
           Q+E   I  D + F+GVL ACSHSGL  EG   F+ M+R   IEP+L+HY C+VD+L+R+
Sbjct: 426 QIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARS 485

Query: 458 GELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517
           G ++ A N++E MP++PN  +W T L AC +H+     E+V + L+     +   YVLLS
Sbjct: 486 GSIKLARNLIEGMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILXGGYNPSSYVLLS 545

Query: 518 NIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
           N+YA  GMW+   R+R MM+++ I+K  G S IE+DG + EF+
Sbjct: 546 NMYASNGMWKDVRRVRTMMKEKNIEKIPGCSWIELDGRVHEFL 588


>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/563 (36%), Positives = 324/563 (57%), Gaps = 45/563 (7%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLT-SPNTLNMDQAERLFNQ 71
           NP+VS+L   K+   + QI AQ+   +L+   FT+S+L+   + S  +  +D A  +F++
Sbjct: 7   NPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSR 66

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYT------YPFVLKACGVL 125
           I  PN+++   +I+G++ +SNP ++L  Y  M    L   NY+       P VLKACG L
Sbjct: 67  IQHPNSFIFFALIKGFSDTSNPVESLILYARM----LSCLNYSSGVEFSIPSVLKACGKL 122

Query: 126 MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL 185
           +   EG ++HG+V+K     D FV N ++ MY   G +  AR VF+    +D+VSWN ++
Sbjct: 123 LAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMI 182

Query: 186 RGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWN 245
            G+++ GE+  A E+FDEMP++D +S + MIDGY  K G    A  +FE M  KD+++W 
Sbjct: 183 AGYLKAGEIELASELFDEMPERDLVSCNAMIDGY-GKCGRCELAEKVFETMSDKDVVTWT 241

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           SM                               I  Y Q+  P +AL LFREML  G+RP
Sbjct: 242 SM-------------------------------ISAYVQNRCPMKALDLFREMLSLGLRP 270

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM-IVQTALIDMYMKCGSLDEARRI 364
           D  +++  +SA A +G ++ GKW+H ++  ++I +    + +ALIDMY KCG ++ A  +
Sbjct: 271 DGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHV 330

Query: 365 FYSMT-KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           F S++ ++N+  +N MI+GL ++G   EAL  F +ME   I  +++ FLG+L  CSH GL
Sbjct: 331 FRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGL 390

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             EG   F+SM     I P+++HY C++DL  RAG LE AL ++++MP + +L  W  +L
Sbjct: 391 VEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAIL 450

Query: 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
            A   H ++ + +      +EL  DD   YVLLSNIYA AG W+   +IR MMR+R +KK
Sbjct: 451 SASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKK 510

Query: 544 ETGRSVIEIDGNIKEFVSGEIFD 566
             G S + +BG + EF+ G+  D
Sbjct: 511 IAGCSSMLVBGKVHEFLXGKELD 533


>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 550

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/541 (38%), Positives = 321/541 (59%), Gaps = 37/541 (6%)

Query: 11  LKNPLVS-LLQISKTTTHILQILAQLTTNDLITEPFTLSQLLM-SLTSPNTLNMDQAERL 68
           L +P +S  L     T+H+ Q  A L  + L + PFT+++LL  +  SP+  ++  A+ +
Sbjct: 9   LHHPSLSQALTALTATSHLHQAHAHLIVSGLASHPFTVTRLLACAALSPSASDLPHAKTI 68

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           F   + P+ +M NT+I     SS    +++FYV M   G   DN+T+PF++K+       
Sbjct: 69  FLHTHNPSPFMFNTIIMA---SSRTLDSVTFYVCMLHAGHFPDNFTFPFLIKSSSASPTS 125

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
           + G ++H  VVK G   DVFVVN +I +YS    +  AR VF+        S++LV    
Sbjct: 126 LLGHQLHAHVVKFGLDRDVFVVNNMIALYSSFRELRSARKVFD-------ESYSLV---- 174

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMI 248
                              D +SW+ +I G+    G I  AR +F+ MP+K+ +SWN+MI
Sbjct: 175 -------------------DVVSWTTLITGF-SNSGQIDEARKIFDLMPLKNTVSWNAMI 214

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC-QGVRPDV 307
            GYA    +  A++LF+EMP+R+  SWS M+ GY+Q G   EAL LF EM+    + P+ 
Sbjct: 215 SGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNEALDLFMEMVTGDKMIPNE 274

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
            +++ A+SACAQ+ AL+ G+W+H ++K  ++ +++ + T L+DMY KCGS+ +A  +F  
Sbjct: 275 AALVSAVSACAQLRALEEGRWLHSYIKEKKLRINVTLGTVLLDMYGKCGSILDAAGVFNL 334

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           M+++NV S+N MIAGL +NG G+EAL  F +M+  G   + + F+ +L  CSHSGL TEG
Sbjct: 335 MSERNVNSWNSMIAGLALNGCGKEALALFWKMQFVGPSPNAITFIALLTGCSHSGLITEG 394

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
             +F  M +  GI+P+L+HY C+VDLL RAG +++AL+ VE MPMKP+  LWG L+ ACR
Sbjct: 395 RWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKEALDFVEKMPMKPHSELWGALVGACR 454

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
            H  V L E + + L++L+    G Y LL NI+A A  W+    +R + + RK+ K  G 
Sbjct: 455 IHGQVELGEELGKRLIDLEPHHGGRYALLCNIFAAAQRWDDVAMVRDLEKGRKVLKNPGN 514

Query: 548 S 548
           +
Sbjct: 515 N 515


>gi|356564579|ref|XP_003550529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Glycine max]
          Length = 576

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/559 (37%), Positives = 318/559 (56%), Gaps = 36/559 (6%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDL-ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIY 73
           L++L++   T     QI A +  N      P  + ++L+   +      + A  + + ++
Sbjct: 6   LITLMKKCSTVKQAKQIHAHILINGFTFLRPLLIHRMLLWDVTNYRTMANYAYSMLHHLH 65

Query: 74  QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
            P+++    +IR ++Q     +A+S YV M R  L   ++     LK+C  +  ++ G  
Sbjct: 66  IPDSFSWGCVIRFFSQKCLFTEAVSLYVQMHRTSLCPTSHAVSSALKSCARIHDMLCGMS 125

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           IHG+V   GF   V+V   L+ +YSK G MG AR VF+    K +VSWN +L G+V+ G 
Sbjct: 126 IHGQVHVFGFNTCVYVQTALLDLYSKIGDMGTARKVFDEMANKSVVSWNSLLSGYVKAGN 185

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAK 253
           + +A+ +F E+P KD ISW+ MI GY  K G++  A  LF+ MP ++L SWN+MI G+  
Sbjct: 186 LDEAQYLFSEIPGKDVISWNSMISGY-AKAGNVGQACTLFQRMPERNLSSWNAMIAGFID 244

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGY------------------------------- 282
            G LV+A++ F+ MP RN  SW  MI GY                               
Sbjct: 245 CGSLVSAREFFDTMPRRNCVSWITMIAGYSKGGDVDSARKLFDQMDHKDLLSYNAMIACY 304

Query: 283 AQHGNPKEALYLFREMLCQG--VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM 340
           AQ+  PKEAL LF +ML Q   V PD +++   ISAC+Q+G L+   WI   M    I +
Sbjct: 305 AQNSKPKEALELFNDMLKQDIYVHPDKMTLASVISACSQLGDLEHWWWIESHMNDFGIVL 364

Query: 341 DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME 400
           D  + TALID+Y KCGS+D+A  +F+++ K+++++Y+ MI G G+NG   +A+K F QM 
Sbjct: 365 DDHLATALIDLYAKCGSIDKAYELFHNLRKRDLVAYSAMIYGCGINGKASDAIKLFEQML 424

Query: 401 TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460
            E I  + + + G+L A +H+GL  +GY+ F SMK + G+ P ++HY  +VDL  RAG L
Sbjct: 425 AECIGPNLVTYTGLLTAYNHAGLVEKGYQCFNSMKDY-GLVPSIDHYGIMVDLFGRAGYL 483

Query: 461 EQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520
           ++A  ++ +MPM+PN  +WG LLLACR H NV L E+ V+  ++L+ D  G   LLS+IY
Sbjct: 484 DEAYKLILNMPMQPNAGVWGALLLACRLHNNVELGEIAVQHCIKLETDTTGYCSLLSSIY 543

Query: 521 ADAGMWEHALRIRKMMRKR 539
           A    W+ A ++RK M  +
Sbjct: 544 ATVEKWDDAKKLRKGMEGK 562


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/574 (36%), Positives = 330/574 (57%), Gaps = 47/574 (8%)

Query: 45  FTLSQLL-MSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM 103
           +  SQLL   + SP+   +  A  +F  I +PN  + N M RG+  SS+P  AL  YV M
Sbjct: 7   YAXSQLLEFCILSPHFDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVM 66

Query: 104 KRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHM 163
              GLL + +T+PF+LK+C       EG +IHG V+K+GF  D++V   LI MY++ G +
Sbjct: 67  ISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRL 126

Query: 164 GCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK 223
             A+ VF+ S  +D+VS+  ++ G+   G +  A+++FDE+P KD +SW+ MI GY  + 
Sbjct: 127 EDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGY-AET 185

Query: 224 GDISSARILFEHM------PIKDLI--------------------SW------------- 244
           G+   A  LF+ M      P +  +                    SW             
Sbjct: 186 GNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIV 245

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           N++ID Y+K G++  A +L   +  ++V SW+ +I GY      KEAL LF+EML  G  
Sbjct: 246 NALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 305

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSR----ITMDMIVQTALIDMYMKCGSLDE 360
           P+ ++++  + ACA +GA+D+G+WIHV++ +      +T    ++T+LIDMY KCG +D 
Sbjct: 306 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDA 365

Query: 361 ARRIFYSMT-KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           A ++  S    +++ ++N MI G  M+G    A   F++M   GI  DD+ F+G+L ACS
Sbjct: 366 APQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACS 425

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           HSG+   G  IF+SM++   I PKLEHY C++DLL  +G  ++A  ++ +MPM+P+  +W
Sbjct: 426 HSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIW 485

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
            +LL AC+ H N+ L E   + L++++ ++ G YVLLSNIYA AG W    +IR ++  +
Sbjct: 486 CSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDK 545

Query: 540 KIKKET-GRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            +KK+  G S IEID  + EF+ G+    Q+ E+
Sbjct: 546 GMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREI 579


>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
          Length = 606

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/592 (36%), Positives = 328/592 (55%), Gaps = 43/592 (7%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNM-DQAERLFNQIYQ 74
           + +L   KT+  + QI  +L    +I      ++++++  S     + D A  +F++ + 
Sbjct: 9   IHVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYHV 68

Query: 75  --------PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
                    + ++ N +I+ ++   +P++AL     M   G+ VD ++   VLKAC  L 
Sbjct: 69  CSFSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLG 128

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
            +  G +IHG + K G   D+F+ N LIG+Y KCG +G +R +F+    +D VS+N ++ 
Sbjct: 129 FVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMID 188

Query: 187 GFVECGEMGKAREVFDEMPQ--KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
           G+V+CG +  ARE+FD MP   K+ ISW+ MI GY +    +  A  LF  MP KDLISW
Sbjct: 189 GYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISW 248

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV- 303
           NSMIDGY K G +  A+ LF+ MP R+V +W+ MIDGYA+ G    A  LF +M  + V 
Sbjct: 249 NSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVV 308

Query: 304 -------------------------------RPDVISVMGAISACAQVGALDLGKWIHVF 332
                                           PD  +++  + A AQ+G L     +H++
Sbjct: 309 AYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLY 368

Query: 333 MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
           +   +  +   +  ALIDMY KCGS+  A  +F  +  K++  +N MI GL ++G GE A
Sbjct: 369 IVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESA 428

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
                Q+E   +  DD+ F+GVL ACSHSGL  EG   F+ M+R   IEP+L+HY C+VD
Sbjct: 429 FDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVD 488

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
           +LSR+G +E A N++E MP++PN  +W T L AC +H+     E+V + L+     +   
Sbjct: 489 ILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSS 548

Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEI 564
           YVLLSN+YA  GMW+   R+R MM++RKI+K  G S IE+DG + EF    I
Sbjct: 549 YVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFVDSI 600


>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
 gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g45350, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
 gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
          Length = 613

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/592 (36%), Positives = 328/592 (55%), Gaps = 43/592 (7%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNM-DQAERLFNQIYQ 74
           + +L   KT+  + QI  +L    +I      ++++++  S     + D A  +F++ + 
Sbjct: 16  IHVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYHV 75

Query: 75  --------PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
                    + ++ N +I+ ++   +P++AL     M   G+ VD ++   VLKAC  L 
Sbjct: 76  CSFSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLG 135

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
            +  G +IHG + K G   D+F+ N LIG+Y KCG +G +R +F+    +D VS+N ++ 
Sbjct: 136 FVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMID 195

Query: 187 GFVECGEMGKAREVFDEMPQ--KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
           G+V+CG +  ARE+FD MP   K+ ISW+ MI GY +    +  A  LF  MP KDLISW
Sbjct: 196 GYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISW 255

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV- 303
           NSMIDGY K G +  A+ LF+ MP R+V +W+ MIDGYA+ G    A  LF +M  + V 
Sbjct: 256 NSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVV 315

Query: 304 -------------------------------RPDVISVMGAISACAQVGALDLGKWIHVF 332
                                           PD  +++  + A AQ+G L     +H++
Sbjct: 316 AYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLY 375

Query: 333 MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
           +   +  +   +  ALIDMY KCGS+  A  +F  +  K++  +N MI GL ++G GE A
Sbjct: 376 IVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESA 435

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
                Q+E   +  DD+ F+GVL ACSHSGL  EG   F+ M+R   IEP+L+HY C+VD
Sbjct: 436 FDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVD 495

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
           +LSR+G +E A N++E MP++PN  +W T L AC +H+     E+V + L+     +   
Sbjct: 496 ILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSS 555

Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEI 564
           YVLLSN+YA  GMW+   R+R MM++RKI+K  G S IE+DG + EF    I
Sbjct: 556 YVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFVDSI 607


>gi|357478647|ref|XP_003609609.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510664|gb|AES91806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 576

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/573 (36%), Positives = 330/573 (57%), Gaps = 38/573 (6%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLIT-EPFTLSQLLM-SLTSPNTLNMDQAERLFNQI 72
           L +L++   T  H  QI AQ+ TN+L   EP  + ++L+  +T+  T++ +    + + +
Sbjct: 6   LTTLMKKCSTVKHAKQIHAQIITNNLTHLEPIFIHRILLCDITNYKTIS-NYILSILHHL 64

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
             P+++    +IR ++Q     +A+S YV M+R GL   ++    +LK+C  +   + G 
Sbjct: 65  RNPDSFSWGCVIRFFSQKGQFVEAVSLYVQMRRIGLCPSSHAVSSILKSCARVEDDLCGL 124

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
            IHG V K GF   V+V   L+ +Y K G +  AR VF+    K++VSWN +L G+++ G
Sbjct: 125 LIHGHVHKFGFDACVYVQTALLDLYCKIGDVVTARKVFDEMPDKNVVSWNSLLSGYIKGG 184

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA 252
            + + +  FDE+P KD ISW+ M+ GY  K G +  A  LF+ MP ++  SWN+MI GY 
Sbjct: 185 NLDEGQRFFDEIPLKDVISWNCMVSGY-AKAGKMDRACYLFQQMPERNFASWNTMITGYV 243

Query: 253 KIGDLVAAQQLFNEMPERN-------------------------------VFSWSIMIDG 281
             G +V A++LF+ MP RN                               + S++ MI  
Sbjct: 244 DCGSIVEARELFDAMPRRNSVSLITMIAGYSKSGDVHSARELFDQMDDKDLLSYNAMIAC 303

Query: 282 YAQHGNPKEALYLFREMLC--QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRIT 339
           YAQ   PKEAL LF  ML     + PD +++   ISAC+Q+G L+  +WI   +    I 
Sbjct: 304 YAQSSKPKEALDLFNVMLKPDSSLHPDKMTLASVISACSQLGNLEHWRWIESQINNFGIV 363

Query: 340 MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
           +D  + TALID+Y KCGS+D+A  +F+ + K++V++Y+ MI G G+NG   +A++ F +M
Sbjct: 364 LDDHLATALIDLYAKCGSIDKAYELFHGLRKRDVVAYSAMIYGCGINGRASDAVELFERM 423

Query: 400 ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
             E I  + + + G+L A +H+GLA EGYR F SMK + GI P ++HY  +VDLL RAG 
Sbjct: 424 AGECIIPNLVTYTGILTAYNHAGLAEEGYRCFISMKDN-GIVPSVDHYGIMVDLLGRAGW 482

Query: 460 LEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519
           L++A  ++  MPM+PN+ +WG LLLACR H N+ L E+ V+  ++L+++  G Y LLS I
Sbjct: 483 LDEAYKLIMKMPMQPNVGVWGALLLACRLHDNLKLGEIAVQHCIKLESETAGYYSLLSGI 542

Query: 520 YADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
           YA  G W  A ++   +  +KI K  G S  ++
Sbjct: 543 YATVGKWNDAKKLTTGVEGKKIIKIPGCSWTQL 575


>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 491

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/467 (40%), Positives = 294/467 (62%), Gaps = 3/467 (0%)

Query: 111 DNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF 170
           D++TY F++KA     G+     +H  VVK+G + D FV N LI  YSK G    AR VF
Sbjct: 5   DSFTYSFLIKALSA-AGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVF 63

Query: 171 EGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR 230
           +    +D+VSWN  +   V  GE+   R++FDEMP+KD +SW+ ++DGY  K G++ +A 
Sbjct: 64  DEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGY-TKAGEVEAAF 122

Query: 231 ILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
            LF+ MP ++++SW++M+ GY K GDL  A+ +F++MP +N+ +W+IM+   AQ G   E
Sbjct: 123 ELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDE 182

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
           A  LF +M    V  DV +V+  ++ACA+ G+L LGK IH ++++  +     V  ALID
Sbjct: 183 AGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALID 242

Query: 351 MYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           M+ KCG ++ A  +F + T +K+ +S+N +I G  M+G G++AL+ FAQM+ +G   D +
Sbjct: 243 MFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAV 302

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
             + VL AC+H G   EG R F +M+R  GI P++EHY C++DLL R G +++A+++++S
Sbjct: 303 TMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKS 362

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           MP +PN  +WG+LL ACR H+NV  AE+ V  L +L+  + G Y +LSNIYA+AG W   
Sbjct: 363 MPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDM 422

Query: 530 LRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
            + R  M+    +K  G S +E++    EF  G+     S+++  ++
Sbjct: 423 AKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMV 469



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 102/249 (40%), Gaps = 12/249 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A  +F+++   N      M+    Q     +A   +  MK   + +D      +L 
Sbjct: 148 DLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILA 207

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI-KDLV 179
           AC     L  G  IH  V K        V N LI M+ KCG +  A  VF+   + KD V
Sbjct: 208 ACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSV 267

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEH 235
           SWN ++ GF   G   KA E+F +M Q+    DA++  I +       G +   R  F +
Sbjct: 268 SWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVT-MINVLSACTHMGFVDEGRRHFSN 326

Query: 236 MP-----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPK 289
           M      +  +  +  MID   + G +  A  L   MP E N   W  ++     H N +
Sbjct: 327 MERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVE 386

Query: 290 EALYLFREM 298
            A     E+
Sbjct: 387 YAEIAVNEL 395


>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/509 (38%), Positives = 301/509 (59%), Gaps = 33/509 (6%)

Query: 46  TLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKR 105
            L +L+ + +   +  M  A +LF  I +P+T+M NTMIRG  QS +P  A+S Y  M+ 
Sbjct: 12  ALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMEN 71

Query: 106 KGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGC 165
             +  D +T+PFVLKAC  L  +  G  +HG V ++GF  + FV N LI  ++ CG    
Sbjct: 72  GCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCG---- 127

Query: 166 ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGD 225
                                      ++  AR +FD   ++D ++WS +  GY  ++G+
Sbjct: 128 ---------------------------DLAVARALFDGSAKRDVVAWSALTAGY-ARRGE 159

Query: 226 ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
           +  AR LF+ MP+KDL+SWN MI GYAK G++ +A++LF+E+P+R+V +W+ MI GY   
Sbjct: 160 LGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLC 219

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI-TMDMIV 344
           G+ ++AL +F EM   G  PD ++++  +SAC  +G LD G+ IH  +       + +++
Sbjct: 220 GSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLL 279

Query: 345 QTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGI 404
             ALIDMY KCGS+  A  +F  M +K+V ++N ++ GL  +G  E+++  F +M    I
Sbjct: 280 GNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKI 339

Query: 405 PKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL 464
             D++ F+GVL+ACSH+G   EG + F  M+    IEP + HY C+VDLL RAG L +A 
Sbjct: 340 RPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAF 399

Query: 465 NIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524
           + +++M ++PN  +W TLL ACR H NV L       L++++ D+ G YVLLSNIYA  G
Sbjct: 400 DFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRG 459

Query: 525 MWEHALRIRKMMRKRKIKKETGRSVIEID 553
            W+   ++RK+M    ++KE G S+IE D
Sbjct: 460 EWDGVEKVRKLMDDSGVRKEAGCSLIEGD 488


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/530 (38%), Positives = 308/530 (58%), Gaps = 35/530 (6%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           +A R+F+++   N      MI  Y +  + Q+AL F+  M+  G+  +++T+  +L AC 
Sbjct: 118 EARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACT 177

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            L  L    E H E+VK GF  +VFV NGL+ MY+K G +  AR +F+    +D+VSWN 
Sbjct: 178 DLEVL---GEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNA 234

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243
           ++ G+V+ G +  A ++F E+P++D I+W+ M+ GY  + GD+ +A  LFE MP ++L+S
Sbjct: 235 MIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGY-AQCGDVENAVELFEKMPEQNLVS 293

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML-CQG 302
           WN+MI GY + G +  A +LF  MPERNV SW+ +I G+AQ+G  +EAL LF+ M  C  
Sbjct: 294 WNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNV 353

Query: 303 V------------------------------RPDVISVMGAISACAQVGALDLGKWIHVF 332
           V                              +P+  +    + ACA +  L+ G   H  
Sbjct: 354 VSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEV 413

Query: 333 MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
           + RS    D++V   L+ MY KCGS+++AR++F  M +++  S + MI G  +NG  +E+
Sbjct: 414 VIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKES 473

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
           L+ F QM+  G+  D + F+GVL AC H+GL  EG + F  M R   I P +EHY C++D
Sbjct: 474 LELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMID 533

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
           LL RAG  ++A +++  MP+KP+  +WG+LL ACR H N+ L E V + L+ L   +   
Sbjct: 534 LLGRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAP 593

Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
           YVLLSNIYA AG W+    +R  M+ RK+KK+ G S I I   +  F+ G
Sbjct: 594 YVLLSNIYAAAGRWDDIGSVRNRMKDRKVKKKLGCSWIVIKKQVHAFLVG 643



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 192/421 (45%), Gaps = 82/421 (19%)

Query: 80  HNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVV 139
           ++ +++   +    ++AL    +M   G+   + TY  +L+ C     L +   +H  ++
Sbjct: 32  NDGLVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMI 91

Query: 140 KMGFLC-DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAR 198
           +  F C D+ + N L+ +Y                               V+ G + +AR
Sbjct: 92  QTQFECQDISLGNKLVSIY-------------------------------VKLGSLVEAR 120

Query: 199 EVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI-------------------- 238
            VFDEMP K+ +SW+ MI  Y + +    +    +E   +                    
Sbjct: 121 RVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLE 180

Query: 239 ---------------KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
                           ++   N ++D YAK G +  A++LF++MP+R+V SW+ MI GY 
Sbjct: 181 VLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYV 240

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
           Q+G  ++AL LF+E+     + DVI+    ++  AQ G  D+   + +F K      +++
Sbjct: 241 QNGLIEDALKLFQEI----PKRDVITWNTMMAGYAQCG--DVENAVELFEKMPE--QNLV 292

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
               +I  Y++ GS+ EA ++F  M ++NVIS+N +I+G   NG  EEALK F  M    
Sbjct: 293 SWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTM---- 348

Query: 404 IPKDDLIFLGVLIAC-SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
            P+ +++    +IA  S +G A    ++F  M+    ++P  E ++ ++   +    LEQ
Sbjct: 349 -PECNVVSWNAMIAGYSQNGQAENALKLFGQMQM-VDMKPNTETFAIVLPACAALAVLEQ 406

Query: 463 A 463
            
Sbjct: 407 G 407



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 165/328 (50%), Gaps = 27/328 (8%)

Query: 226 ISSARILFEHM-----PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMID 280
           +  A++L  HM       +D+   N ++  Y K+G LV A+++F+EMP +NV SW+ MI 
Sbjct: 80  LPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIA 139

Query: 281 GYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM 340
            YA+H + +EAL  F EM   G++P+  +    + AC  +    LG++ H  + +     
Sbjct: 140 AYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEV--LGEF-HDEIVKGGFES 196

Query: 341 DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME 400
           ++ V   L+DMY K G ++ AR +F  M +++V+S+N MIAG   NG  E+ALK F +  
Sbjct: 197 NVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQE-- 254

Query: 401 TEGIPKDDLIFLGVLIAC-SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
              IPK D+I    ++A  +  G       +F+ M      E  L  ++ ++    + G 
Sbjct: 255 ---IPKRDVITWNTMMAGYAQCGDVENAVELFEKMP-----EQNLVSWNTMIAGYVQNGS 306

Query: 460 LEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519
           +++A  + + MP + N+  W  ++     +  V  A  + + + E     C +    + I
Sbjct: 307 VKEAFKLFQIMPER-NVISWNAVISGFAQNGQVEEALKLFKTMPE-----CNVVSWNAMI 360

Query: 520 --YADAGMWEHALRIRKMMRKRKIKKET 545
             Y+  G  E+AL++   M+   +K  T
Sbjct: 361 AGYSQNGQAENALKLFGQMQMVDMKPNT 388



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 151/350 (43%), Gaps = 80/350 (22%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ A +LF +I + +    NTM+ GY Q  + + A+  +  M  + L+            
Sbjct: 245 IEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLV------------ 292

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
                                        N +I  Y + G +  A  +F+    ++++SW
Sbjct: 293 ---------------------------SWNTMIAGYVQNGSVKEAFKLFQIMPERNVISW 325

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI--- 238
           N V+ GF + G++ +A ++F  MP+ + +SW+ MI GY  + G   +A  LF  M +   
Sbjct: 326 NAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGY-SQNGQAENALKLFGQMQMVDM 384

Query: 239 ------------------------------------KDLISWNSMIDGYAKIGDLVAAQQ 262
                                                D++  N+++  YAK G +  A++
Sbjct: 385 KPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARK 444

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F+ M +++  S S MI GYA +G  KE+L LF +M   G++PD ++ +G +SAC   G 
Sbjct: 445 VFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGL 504

Query: 323 LDLGKWIHVFMKR-SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
           +D G+     M R   IT  M     +ID+  + G  DEA  +   M  K
Sbjct: 505 VDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIK 554



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 128/277 (46%), Gaps = 21/277 (7%)

Query: 31  ILAQLTTNDLITEPFTLSQLL--MSLTSPNTL--------NMDQAERLFNQIYQPNTYMH 80
           ++A    N  + E F L Q++   ++ S N +         +++A +LF  + + N    
Sbjct: 297 MIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSW 356

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N MI GY+Q+   + AL  +  M+   +  +  T+  VL AC  L  L +G E H  V++
Sbjct: 357 NAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIR 416

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
            GF  DV V N L+GMY+KCG +  AR VF+    +D  S + ++ G+   G   ++ E+
Sbjct: 417 SGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLEL 476

Query: 201 FDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHMP-----IKDLISWNSMIDGY 251
           F++M     + D +++  ++       G +   R  F+ M         +  +  MID  
Sbjct: 477 FEQMQFTGLKPDRVTFVGVLSAC-CHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLL 535

Query: 252 AKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
            + G    A  L N+MP + +   W  ++     H N
Sbjct: 536 GRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNN 572


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/610 (35%), Positives = 328/610 (53%), Gaps = 73/610 (11%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMS--LTSPNTLNMDQAERLF 69
           +NP   +LQ  KT   + Q+ A L     + +P     +L S  L  P+T+  D A  +F
Sbjct: 21  ENPKSLILQQCKTPKDLQQVHAHLLKTRRLLDPIITEAVLESAALLLPDTI--DYALSIF 78

Query: 70  NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV 129
           N I +P +  +N MIRG     +P  AL  +  M  K +  D +T+  VLKAC  +  L 
Sbjct: 79  NHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALR 138

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
           EG ++H  ++K GF  + FV N LI MY+ C                             
Sbjct: 139 EGEQVHALILKSGFKSNEFVENTLIQMYANC----------------------------- 169

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK---------GDISSARILFE------ 234
             G++G AR VFD MP++  ++W+ M+ GY K             I   RI F+      
Sbjct: 170 --GQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMIS 227

Query: 235 ---------HMPIKDLIS--------------WNSMIDGYAKIGDLVAAQQLFNEMPERN 271
                    ++ I +LI                 S+ID YAK G +  A++LF+EM +R+
Sbjct: 228 VLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRD 287

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV 331
           V +WS MI GYAQ    KEAL LF EM    V P+ ++++  + +CA +GA + GKW+H 
Sbjct: 288 VVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHF 347

Query: 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391
           ++K+ ++ + + + T LID Y KCG +D +  +F  M+ KNV ++  +I GL  NG G+ 
Sbjct: 348 YIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKM 407

Query: 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
           AL+ F+ M    +  +D+ F+GVL ACSH+ L  +G  +F SM+R   IEP++EHY C+V
Sbjct: 408 ALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMV 467

Query: 452 DLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511
           D+L RAG LE+A   +++MP  PN  +W TLL +CR H+N+ +AE  +E +  L+    G
Sbjct: 468 DILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSG 527

Query: 512 LYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEE 571
            Y+LLSN YA  G  E A+R+R ++++++IKK  G S+IE+DG + EF S +     S+E
Sbjct: 528 DYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKE 587

Query: 572 LELVIQSFVK 581
           +   +   +K
Sbjct: 588 IHDALDKMMK 597


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/595 (35%), Positives = 346/595 (58%), Gaps = 27/595 (4%)

Query: 9   FSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERL 68
           F+  +   SL+  S    H+ QI  +L  + L    F +++L+    S N   +  A +L
Sbjct: 53  FNSDSFYASLIDNSTHKRHLDQIHNRLVISGLQHNGFLMTKLVNG--SSNLGQICYARKL 110

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           F++   P+ +M N +IR Y++++  +  +  Y  M+  G+  D +T+P+VLKAC  L+  
Sbjct: 111 FDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDF 170

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
                IHG+++K GF  DVFV NGL+ +Y+KCGH+G A+ VF+G   + +VSW  ++ G+
Sbjct: 171 GLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGY 230

Query: 189 VECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFE---HMPIKD- 240
            + G+  +A  +F +M     + D I+   ++  Y     D+   R +      M ++D 
Sbjct: 231 AQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVD-DLEQGRSIHGFVIKMGLEDE 289

Query: 241 ---LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
              LIS  +    YAK G +  A+  F++M   NV  W+ MI GYA++G+ +EA+ LF  
Sbjct: 290 PALLISLTAF---YAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHY 346

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
           M+ + ++PD ++V  A+ A AQVG+L+L +W+  ++ +S    D+ V T+LIDMY KCGS
Sbjct: 347 MISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGS 406

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
           ++ ARR+F   + K+V+ ++ MI G G++G G EA+  +  M+  G+  +D+ F+G+L A
Sbjct: 407 VEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTA 466

Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
           C+HSGL  EG+ +F  MK    I P+ EHYSC+VDLL RAG L +A   +  +P++P ++
Sbjct: 467 CNHSGLVKEGWELFHCMKDF-EIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVS 525

Query: 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537
           +WG LL AC+ ++ VTL E     L  L   + G YV LSN+YA + +W+    +R +MR
Sbjct: 526 VWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMR 585

Query: 538 KRKIKKETGRSVIEIDGNIKEFVSG--------EIFD-VQSEELELVIQSFVKTT 583
           ++ + K+ G SVIEI+G ++ F  G        EIFD +Q  E  L    FV  T
Sbjct: 586 EKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYT 640


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/597 (34%), Positives = 325/597 (54%), Gaps = 42/597 (7%)

Query: 18  LLQISKTTTHILQILAQLTTNDLITE---PFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           LL   KT  H+ QI AQ+  + +         L     +L SP+   +D A  LF+ I  
Sbjct: 18  LLASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHIPN 77

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           P T   N ++R +++   P+  LS Y++++R G  +D +++P +LKA   L  L  G EI
Sbjct: 78  PPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEI 137

Query: 135 HGEVVKMGFL-CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           HG   K GF   D F+ + LI MY+ CG +  AR +F+    +D+V+WN+++ G+ +   
Sbjct: 138 HGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAH 197

Query: 194 MGKAREVFDEMPQK-------------------------DAISWSIMIDGYR-------- 220
                ++++EM                             AI   I  +G+R        
Sbjct: 198 YDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTS 257

Query: 221 -----KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
                   G +  AR +++ +P K ++   +M+ GYAK+G +  A+ +F+ M E+++  W
Sbjct: 258 LVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCW 317

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
           S MI GYA+   P EAL LF EM  + + PD I+++  ISACA VGAL   KWIH +  +
Sbjct: 318 SAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADK 377

Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
           +     + +  ALIDMY KCG+L +AR +F +M +KNVIS++ MI    M+G  + A+  
Sbjct: 378 NGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIAL 437

Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           F +M+ + I  + + F+GVL ACSH+GL  EG + F SM     I P+ EHY C+VDL  
Sbjct: 438 FHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYC 497

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515
           RA  L +A+ ++E+MP  PN+ +WG+L+ AC+NH  + L E     L+EL+ D  G  V+
Sbjct: 498 RANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVV 557

Query: 516 LSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           LSNIYA    W+    +RK+M+ + + KE   S IE++  +  F+  + +  QS+E+
Sbjct: 558 LSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDEI 614


>gi|354805159|gb|AER41579.1| CRR4 [Oryza brachyantha]
          Length = 626

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/604 (34%), Positives = 331/604 (54%), Gaps = 46/604 (7%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           ++  L+ +L+   +  H+ Q  A+L    L   P  L  L+ +  S ++     +  L  
Sbjct: 1   MEQELLRILRTLGSPHHLRQAHARLVAAGLSASPRLLPALVAAAFSAHSPR-HASAALRA 59

Query: 71  QIYQPNTYMHNTMI------RGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
                ++  HNT+I      RG+     P  AL+ Y  M   G+  + +T+ F+L+AC +
Sbjct: 60  AGPAASSVSHNTLIERLAGARGHRPV--PADALAAYTAMLAAGVPPNGFTFTFLLRACAL 117

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG---CARSVF----------- 170
           L        +HG++V+ GF  +VFV N L+ +Y +CG  G    AR VF           
Sbjct: 118 LGFPRPCRCVHGQIVRWGFGSEVFVQNTLLDVYYRCGGPGRVAAARQVFDEMVDRDVVSW 177

Query: 171 --------------------EGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAI 210
                               E    +++VSWN ++ GF   G+M  A+ VFD MP ++AI
Sbjct: 178 NSIIGVYMSSGDYTGAMELFEAMPERNVVSWNTLVAGFARVGDMVTAQTVFDRMPSRNAI 237

Query: 211 SWSIMIDGYRKKKGDISSARILFEHMP-IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269
           SW++MI GY    GD+ +AR +F+ M   KD++SW +M+  YAKIGDL  A++LF+ MP 
Sbjct: 238 SWNLMISGY-ASSGDVEAARSMFDRMDQKKDVVSWTAMVSAYAKIGDLDTAKELFDHMPL 296

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKW 328
           +N+ SW+ MI GY  +    EAL  F+ M+ +G  RPD  +++  +SACAQ+G+++   W
Sbjct: 297 KNLVSWNAMITGYNHNSRYGEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNW 356

Query: 329 IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
           I  F+++S + + + +  ALIDM+ KCG +  A+ IFY M  + +I++  MI+G   NG 
Sbjct: 357 ISSFIRKSNVHLTIALGNALIDMFAKCGDVGRAQSIFYEMKTRCIITWTTMISGFAFNGL 416

Query: 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
             EAL  +  M  EG+  DD++F+  L AC H GL  EG+ IF  M     I+P++EHY 
Sbjct: 417 CREALLVYNNMCREGVELDDMVFIAALAACVHGGLLQEGWSIFNEMVEQYNIQPRMEHYG 476

Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508
           C+VDLL RAG L++A+  +ESMP++P++ +W TLL +C  H N    + V + + EL+  
Sbjct: 477 CVVDLLGRAGNLQEAVLFIESMPLEPSVVIWATLLSSCVAHGNAEFIDYVSKKITELEPF 536

Query: 509 DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQ 568
           +    VL+SN  A  G W+  +  R +MR   I+K  G S I++   + EF++ +    +
Sbjct: 537 NSSYQVLVSNSSALEGRWDGVIGARTIMRNWGIEKVPGSSSIQVGSEVHEFLAKDTMHER 596

Query: 569 SEEL 572
            +E+
Sbjct: 597 RKEI 600


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/567 (35%), Positives = 333/567 (58%), Gaps = 16/567 (2%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
            SL+  S   TH+ QI A+L    L    F +++L+   +  N   +  A +LF++   P
Sbjct: 79  ASLIDDSIHKTHLNQIYAKLLVTGLQYGGFLIAKLVNKAS--NIGEVSCARKLFDKFPDP 136

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           + ++ N ++R Y++      A+  Y  M+   +  D +++P VLKAC  L  L  G  +H
Sbjct: 137 DVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVH 196

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
           G++ + GF  DVFV NGL+ +Y+KCG +  A +VF     + +VSW  ++ G+ + G+  
Sbjct: 197 GQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPI 256

Query: 196 KAREVFDEMPQKDA-ISWSIMIDGYRKKKG--DISSARILFE-------HMPIKDLISWN 245
           +A  +F EM + +    W  ++   R      D+   + +               LIS  
Sbjct: 257 EALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLT 316

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           S+   YAK G ++ A+  FN++   ++  W+ MI GY ++G  +EA+ LFR M  + +RP
Sbjct: 317 SL---YAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRP 373

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D I+V  +I+ACAQ+G+L+L +W+  ++  S    D+IV T+LID Y KCGS+D AR +F
Sbjct: 374 DSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVF 433

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
             +  K+V+ ++ M+ G G++G G E++  F  M   G+  +D+ F+G+L AC +SGL  
Sbjct: 434 DRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVE 493

Query: 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
           EG+ +F  M+ + GIEP+ +HY+C+VDLL RAG L++A N V +MP++P +++WG LL A
Sbjct: 494 EGWDLFHRMRDY-GIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSA 552

Query: 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
           C+ H++VTL E   E L  L   + G YV LSN+YA + +W+   ++R +MR++ + K  
Sbjct: 553 CKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHL 612

Query: 546 GRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           G SVIEI+G ++ F +G+    +S+E+
Sbjct: 613 GYSVIEINGKLQAFQAGDKTHPRSKEI 639


>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
          Length = 512

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/551 (37%), Positives = 311/551 (56%), Gaps = 63/551 (11%)

Query: 26  THILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIR 85
            HI QI + LT +  + +PF   +++         ++  A  LF  + +  +++ NTM+R
Sbjct: 2   AHIKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLR 61

Query: 86  GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC 145
            +T    P   LS Y  M   G L +NYT+ F+L+AC  L  L  G  +H + V++G+  
Sbjct: 62  AFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGW-- 119

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
                                       E  D V  N +L  +  C  M  AR +FD   
Sbjct: 120 ----------------------------EAYDFVQ-NGLLHLYASCNCMDSARRLFD--- 147

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
                             G ++           +D+++W ++I+GYAK G +V A+QLF+
Sbjct: 148 ------------------GSVN-----------RDVVTWTAVINGYAKSGQVVVARQLFD 178

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
           EMPE+N  SWS MI GYAQ G  +EAL LF +M   G RP+  +++GA++ACA +GALD 
Sbjct: 179 EMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQ 238

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
           G+WIH ++ R+R+ +D I+ TALIDMY KCG ++ A R+F  M  ++V ++  +I+GL  
Sbjct: 239 GRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLAN 298

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           +G    A++ F +M+ EG+  +++ F+ +L ACS  GL  EG RIF+SM    GIEP ++
Sbjct: 299 HGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQ 358

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
           HY CLVDLL RAG LE A  +V  MP++P+  + G LL ACR H +V L +  VE L E 
Sbjct: 359 HYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAER 418

Query: 506 KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIF 565
             D  G++VLLSN+YA A  WE   ++RK M ++K+KK  G S+IE+DG + EFV+G++ 
Sbjct: 419 SLDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVAGDMS 478

Query: 566 DVQSEELELVI 576
            V  +E+ L++
Sbjct: 479 HVFMDEIVLLL 489


>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/547 (37%), Positives = 310/547 (56%), Gaps = 63/547 (11%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
           +SLL+       + QI  QL     I    T+S+LL +  S    N+  A  +F++I  P
Sbjct: 15  MSLLERCSNIGELKQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSP 74

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           NT M NTMIR Y+ S++P++AL  Y  M    +  + YT+PF+LKAC  L  L E  +IH
Sbjct: 75  NTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIH 134

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
            +++K GF                            GSE+    + N +LR +       
Sbjct: 135 VQIIKRGF----------------------------GSEV---YATNSLLRVY------- 156

Query: 196 KAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIG 255
                        AIS            G I SA +LF+ +P +D++SWN+MIDGY K G
Sbjct: 157 -------------AIS------------GSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCG 191

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
           ++  A ++F  MPE+NV SW+ MI G+ + G  KEAL L ++ML  G++PD I++  ++S
Sbjct: 192 NVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLS 251

Query: 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS 375
           ACA +GAL+ GKWIH ++ +++I +D ++  ALIDMY+KCG + +A  +F  + KK V +
Sbjct: 252 ACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYT 311

Query: 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMK 435
           +  +I G  ++G G EAL  F QM+  GI      F  VL ACSH+GL  EG  +F+SM 
Sbjct: 312 WTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMS 371

Query: 436 RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLA 495
               ++P +EHY C+VDLL RAG L++A   VESMP+KPN A+WG+LL AC  H+++ L 
Sbjct: 372 TFYNMKPVMEHYGCMVDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLNACHLHKHLELG 431

Query: 496 EVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGN 555
           + + + L+EL  +  G Y+ L++I+A AG W+ A ++R  ++ + +    G S I ++G 
Sbjct: 432 KEIGKFLIELDPEHDGRYIHLASIHAAAGEWDEASQVRSHIKNKGLLNLPGCSTITLNGV 491

Query: 556 IKEFVSG 562
             EF +G
Sbjct: 492 AHEFFAG 498


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/617 (35%), Positives = 335/617 (54%), Gaps = 78/617 (12%)

Query: 2   KTLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLN 61
           K+   A+ +L + L+SLL+   +T  + QI  Q+  N +    F L + +      +  +
Sbjct: 21  KSQRHAQQTLTDKLLSLLKQCTSTKSLQQIHTQMIINAIHKPNFLLHRFI------DLKD 74

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNP-QKALSFYVNMKRKGLLVDNYTYPFVLK 120
            + A  LF+QI  PN Y  N MIRG T +       + FY  MK  G+  +N+TYPFV  
Sbjct: 75  FNNASLLFSQIPYPNEYAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFI 134

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L+ L  G   H  V+K G   D  V + LI MYS+CG                   
Sbjct: 135 ACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCG------------------- 175

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK---------GDISSARI 231
                       E+G AR VFDE+ +KD +SW+ MI GY +           G++  A  
Sbjct: 176 ------------ELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGF 223

Query: 232 LFEHMPIKDLI------------SW-----------------NSMIDGYAKIGDLVAAQQ 262
             + M +  ++            SW                 +++I  Y K GDL +A++
Sbjct: 224 EPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARR 283

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F+ M +++V +W+ MI GYAQ+G   EA+ LF  M   GV PD I+++G +SACA +GA
Sbjct: 284 VFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGA 343

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
           LD GKW+  +     +  D+ V TALIDMY KCGSLD+A R+F  M +KN +S+N MI+ 
Sbjct: 344 LDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISA 403

Query: 383 LGMNGFGEEALKCFAQMETEG--IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGI 440
           L  +G  +E+L  F +M  EG  +  +D+ F+GVL AC H+GL  EG ++F  M    G+
Sbjct: 404 LAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSSFGL 463

Query: 441 EPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVE 500
            PK+EH+SC+VDLL+RAG + +A + +E MP KP+  + G LL AC+  +NV ++E V+ 
Sbjct: 464 VPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEVVLGALLGACQKRRNVDVSERVMH 523

Query: 501 GLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
            L+E++  + G Y++ S I+A+   W+ + R+R +MR+R + K  G S IEI+  + EF 
Sbjct: 524 MLLEMEPLNSGNYIISSKIFANMKRWDDSARMRVLMRQRGVTKTPGCSWIEIENQVHEFH 583

Query: 561 SGEIFDVQSEELELVIQ 577
           +G++    S+++  VI 
Sbjct: 584 AGDVLHFISQDMCQVIN 600


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/598 (35%), Positives = 344/598 (57%), Gaps = 45/598 (7%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLF-- 69
           ++P ++LL+  K      QI + +    L    F  S+L+       + ++  A  LF  
Sbjct: 28  QHPYLNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEE 87

Query: 70  -NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
             Q ++ N ++ N++IRGY+ SS+P  +L  +  M   G+  +++T+PF+ K+C      
Sbjct: 88  NQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKAT 147

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
            EG ++H   +K+    +  V   +I MY+  G M  AR VF+ S ++D VS+  ++ G+
Sbjct: 148 HEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGY 207

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM------PIKDLI 242
           V  G +  AR +FDE+P KD +SW+ MI GY  + G    A + F  M      P K  +
Sbjct: 208 VSQGCLDDARRLFDEIPVKDVVSWNAMISGY-VQSGRFEEAIVCFYEMQEANVLPNKSTM 266

Query: 243 --------------------SW-------------NSMIDGYAKIGDLVAAQQLFNEMPE 269
                               SW             N++ID Y K G+   A++LF+ + E
Sbjct: 267 VVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEE 326

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329
           ++V SW+ MI GY+     +EAL LF  ML   V+P+ ++ +G + ACA +GALDLGKW+
Sbjct: 327 KDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWV 386

Query: 330 HVFMKRS-RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
           H ++ ++ R + +  + T+LIDMY KCG ++ A R+F SM  +N+ S+N M++G  M+G 
Sbjct: 387 HAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGH 446

Query: 389 GEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
            E AL  F++M  +G+ + DD+ F+GVL AC+ +GL   G++ F+SM +  GI PKL+HY
Sbjct: 447 AERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHY 506

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
            C++DLL+RA + E+A  ++++M M+P+ A+WG+LL AC+ H  V   E V E L +L+ 
Sbjct: 507 GCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEP 566

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIF 565
           ++ G +VLLSNIYA AG W+   RIR  +  + +KK  G + IEIDG++ EF+ G+ F
Sbjct: 567 ENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKF 624


>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
          Length = 639

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/612 (35%), Positives = 342/612 (55%), Gaps = 45/612 (7%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           KN  V LLQ  ++  H+ QI A++    L     TL+++++  T P+  ++  AER+   
Sbjct: 16  KNYCVDLLQSCESMAHLTQIHAKIFRVGLQDNMDTLTKIVLFCTDPSRGSIRYAERVLGF 75

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           +  P   M+N MI+   +  N +K L  +  ++++GL  DN+T P V KA G L  +VEG
Sbjct: 76  VQSPCLVMYNLMIKAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPVFKAMGCLGKVVEG 135

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            ++HG VVK GF  D  V N ++GMY   G M  A+ VF+    +D+VSWN+++  +V  
Sbjct: 136 EKVHGYVVKSGF--DACVCNSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGH 193

Query: 192 GEMGKAREVFDEMPQKDAIS---------------------------------------W 212
            +   A  VF  M ++  +                                         
Sbjct: 194 RKFEDAIAVFRRMRRESNLKADEATVVSTLSACSVLRNQEVGEEIHRYVDAELEMTTKIG 253

Query: 213 SIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
           + ++D Y  K G +  AR +F+ M  K++I W SM+ GYA  G L  A++LF   P R++
Sbjct: 254 NALLDMY-CKCGCVDKARAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFERSPVRDI 312

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
             W+ MI+GY Q     EAL LFR+M  Q +RPD   ++  +  CAQ GAL+ GKW+H +
Sbjct: 313 VLWTAMINGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTLLKGCAQTGALEQGKWLHGY 372

Query: 333 MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
           +  + IT+D +V TAL+D+Y KCG +++A  +FY M +++  S+  +I GL +NG   +A
Sbjct: 373 IHENSITLDRVVGTALVDVYAKCGCVEKALEVFYEMKERDTASWTSVIYGLAVNGMTSKA 432

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
           L  F+QME  G   DD+ F+GVL AC+H GL  EG R F SM +   I+PK EHYSCL+D
Sbjct: 433 LDFFSQMEEAGFRPDDITFIGVLTACNHGGLVEEGRRYFDSMTKTYKIQPKSEHYSCLID 492

Query: 453 LLSRAGELEQALNIVESMPMKPN---LALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509
           LL RAG L++A  ++E +P++ +   + L+ +LL ACRN+ N+ ++E V   L  ++  D
Sbjct: 493 LLCRAGLLDEAELLLEMIPIESSDIVVPLYCSLLSACRNYGNLKMSERVGRRLERVEVKD 552

Query: 510 CGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQS 569
             ++ LL+++YA A  WE    +R+ M++  I+K  G S IE++G + EF+ G    ++ 
Sbjct: 553 SSVHTLLASVYASANRWEDVTTVRRKMKELGIRKFPGCSSIEVNGVLHEFMVGGPSHMEM 612

Query: 570 EELELVIQSFVK 581
           +++  V+    K
Sbjct: 613 DDIHSVLGQVTK 624


>gi|6729034|gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
          Length = 548

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/545 (38%), Positives = 316/545 (57%), Gaps = 14/545 (2%)

Query: 14  PLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERLFNQI 72
           P++S L+  ++   + Q+   +  + +I     LS+L+    T P T+N+  A  +F  I
Sbjct: 8   PILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESI 67

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
             P+ Y+ N+MIRGY+ S NP KAL FY  M RKG   D +T+P+VLKAC  L  +  G+
Sbjct: 68  DCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGS 127

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
            +HG VVK GF  +++V   L+ MY  CG +     VFE     ++V+W  ++ GFV   
Sbjct: 128 CVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNN 187

Query: 193 EMGKAREVFDEMPQKDAI--SWSIMIDGYRKKKGDISSARILFEHMPIK---DLISWNSM 247
               A E F EM Q + +  + +IM+D        ++  R    +   K   ++I   S+
Sbjct: 188 RFSDAIEAFREM-QSNGVKANETIMVDLL------VACGRCFDPYFQSKVGFNVILATSL 240

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           ID YAK GDL  A+ LF+ MPER + SW+ +I GY+Q+G+ +EAL +F +ML  G+ PD 
Sbjct: 241 IDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDK 300

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           ++ +  I A    G   LG+ IH ++ ++    D  +  AL++MY K G  + A++ F  
Sbjct: 301 VTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFED 360

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKDDLIFLGVLIACSHSGLATE 426
           + KK+ I++ V+I GL  +G G EAL  F +M+ +G    D + +LGVL ACSH GL  E
Sbjct: 361 LEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYACSHIGLVEE 420

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G R F  M+   G+EP +EHY C+VD+LSRAG  E+A  +V++MP+KPN+ +WG LL  C
Sbjct: 421 GQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNVNIWGALLNGC 480

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
             H+N+ L + +   + E +    G+YVLLSNIYA AG W     IR+ M+ +++ K  G
Sbjct: 481 DIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLIRESMKSKRVDKVLG 540

Query: 547 RSVIE 551
            S +E
Sbjct: 541 HSSVE 545


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/518 (38%), Positives = 309/518 (59%), Gaps = 9/518 (1%)

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
           + ++ +F+Q+ +PN ++ NTMIRG         A+  Y +M+  G L +N+T PFVLKAC
Sbjct: 65  NYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKAC 124

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
              + +  G +IH  +VK G+  DVFV   L+ +Y KC +   A  VF+    K++VSW 
Sbjct: 125 ARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWT 184

Query: 183 LVLRGFVECGEMGKAREVFDEMPQ----KDAISWSIMIDGYRKKKGDISSA----RILFE 234
            ++ G++  G   +A   F ++ +     D+ S  + +     + GD +S     R + +
Sbjct: 185 AIITGYISSGHFREAIGAFKKLLEMGLKPDSFSL-VKVLAACARLGDCTSGEWIDRYISD 243

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
               +++    S++D Y K G+L  A  +F+ MPE+++ SWS MI GYA +G P++AL L
Sbjct: 244 SGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDL 303

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           F +M  + ++PD  +++G +SACA +GALDLG W    M R+    + ++ TALIDMY K
Sbjct: 304 FFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSK 363

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CGS+ +A  IF +M KK+ + +N M+ GL MNG  +     F+ +E  GI  D+  F+G+
Sbjct: 364 CGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGL 423

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L  C+H G   EG + F +MKR   + P +EHY C+VDLL RAG L +A  ++ +MPMKP
Sbjct: 424 LCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKP 483

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           N  +WG LL  C+ H++  LAE V++ L+EL+  + G YV LSNIY+    WE A +IR 
Sbjct: 484 NAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRS 543

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            M++++I+K    S IEIDG + EF+ G+     SE++
Sbjct: 544 TMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKI 581


>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
 gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
          Length = 638

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/555 (35%), Positives = 315/555 (56%), Gaps = 40/555 (7%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            A RLF+ I  P+  M+NT+IR Y  SS P++AL  +  M R+G+L + +T PFV+KAC 
Sbjct: 64  HARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACT 123

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
           +         +HG  +++G +  VFV N L+  Y+  G +G +R  F+    +++VSWN 
Sbjct: 124 IAQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNS 183

Query: 184 VLRGFVECGEMGKAREVFDEMPQK------------------------------------ 207
           ++ G+ + G+  +   +F EM ++                                    
Sbjct: 184 MIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSG 243

Query: 208 ---DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
              D I  S ++D Y  K GD+  AR  FE MPIK ++SW SM+    K G + AA+  F
Sbjct: 244 SRVDLILESALVDMY-GKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWF 302

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
           + MPERN+ SW+ MI  Y Q G   EAL L+ +M  QG+ PD I+++  +SA  ++G L 
Sbjct: 303 DHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLT 362

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
           +GK +H++++ +    D+ +  +L+DMY KCG +D A  +F  M  +NV+S+NV+I GL 
Sbjct: 363 VGKMVHLYIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLA 422

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444
           M+G   + +  F  M T+    D + F+ +L ACSH GL   G   F+SM+    ++ ++
Sbjct: 423 MHGRALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEV 482

Query: 445 EHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE 504
           EHY+C+VDLL R G LE+A+ +++ MPMKP++ +WG LL ACR H NV +   V++ L+E
Sbjct: 483 EHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGRQVIKQLLE 542

Query: 505 LKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEI 564
           L+    GL+VL+SN+  +   WE   R+RK+M++   +K+ G S IEI+ +I EF   +I
Sbjct: 543 LEGISGGLFVLISNLLYETHQWEDMKRLRKLMKEWGTRKDMGVSSIEINNSIHEFGVEDI 602

Query: 565 FDVQSEELELVIQSF 579
              +S E+  V+   
Sbjct: 603 RHERSSEIYAVVDQL 617



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 209/451 (46%), Gaps = 51/451 (11%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           +V    I++   H L +        L+ + F  + LL S  S  +L    + R F+++  
Sbjct: 118 VVKACTIAQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLG--DSRRFFDEMVD 175

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
            N    N+MI GY Q+ + ++  S +  M+R+G L D +T   +L AC     L  G  +
Sbjct: 176 RNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLV 235

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           H  ++  G   D+ + + L+ MY KCG +  AR  FE   IK +VSW  +L    + G +
Sbjct: 236 HCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSV 295

Query: 195 GKAREVFDEMPQKDAISWSIMIDGYRKKK------------------------------- 223
             AR  FD MP+++ +SW+ MI  Y ++                                
Sbjct: 296 NAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSAS 355

Query: 224 ---GDISSARILFEHMPIKDLIS------WNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
              GD++  +++  H+ I+D I        NS++D YAK G +  A  LF+EM  RNV S
Sbjct: 356 GRIGDLTVGKMV--HLYIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVS 413

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W+++I G A HG   + +  FR M+     PD I+ +  +SAC+  G L+ G+     M+
Sbjct: 414 WNVIIGGLAMHGRALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMR 473

Query: 335 R-SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG---FG 389
               +  ++     ++D+  + G L++A  +   M  K +V+ +  ++    ++G    G
Sbjct: 474 HVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIG 533

Query: 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
            + +K    +E EGI     + +  L+  +H
Sbjct: 534 RQVIKQL--LELEGISGGLFVLISNLLYETH 562



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 142/315 (45%), Gaps = 7/315 (2%)

Query: 252 AKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
           A  G L  A++LF+ +P  +   ++ +I  Y     P+EAL L R ML +G+ P+  ++ 
Sbjct: 57  AGHGVLCHARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLP 116

Query: 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
             + AC    A +    +H    R  +   + V  AL+  Y   GSL ++RR F  M  +
Sbjct: 117 FVVKACTIAQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDR 176

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           NV+S+N MI G    G   E    F +M  +G  +D+   + +LIACS  G    G R+ 
Sbjct: 177 NVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIG-RLV 235

Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN 491
                  G    L   S LVD+  + G+L  A    E MP+K  ++ W ++L A   H +
Sbjct: 236 HCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVS-WTSMLCAQTKHGS 294

Query: 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE--TGRSV 549
           V  A    + + E        +  + + Y   G    AL +   M+ + +  +  T  +V
Sbjct: 295 VNAARCWFDHMPERNIVS---WNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAV 351

Query: 550 IEIDGNIKEFVSGEI 564
           +   G I +   G++
Sbjct: 352 LSASGRIGDLTVGKM 366


>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Cucumis sativus]
          Length = 542

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/562 (37%), Positives = 317/562 (56%), Gaps = 44/562 (7%)

Query: 17  SLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPN 76
           SL Q       + Q+ A L  N L +    L +L+       +  MD A +LF QI QP+
Sbjct: 18  SLWQKCTNFRSLKQLHAFLIVNGLNSTTSVLRELIFVSAIVVSGTMDYAHQLFAQISQPD 77

Query: 77  TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHG 136
            +M NTMIRG  Q+  P  A+S Y  M+ +G+  D +T+ FVLKAC  L  +  G  IHG
Sbjct: 78  IFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHG 137

Query: 137 EVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGK 196
           +V+K GF  + FV N LI  ++                                CG++  
Sbjct: 138 KVLKSGFQSNTFVRNTLIYFHA-------------------------------NCGDLAT 166

Query: 197 AREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGD 256
           AR +FD   +++ + WS +  GY  ++G +  AR LF+ MP+KDL+SWN MI  YAK G+
Sbjct: 167 ARALFDASAKREVVPWSALTAGY-ARRGKLDVARQLFDEMPMKDLVSWNVMITAYAKHGE 225

Query: 257 LVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISA 316
           +  A++LF+E+P+++V +W+ MI GY      KEAL +F  M   G RPD ++++  +SA
Sbjct: 226 MEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSA 285

Query: 317 CAQVGALDLGKWIHVFMKRSRITM-----DMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
            A +G L++GK IH    RS   M      +++  ALIDMY KCGS+  A  +F  M KK
Sbjct: 286 SADLGDLEIGKKIH----RSIFDMCCGDLSVLLSNALIDMYAKCGSIGNALEVFQGMRKK 341

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           +  S+N +I GL ++G  EE++  F +M    +  +++ F+ VL+ACSH+G   EG   F
Sbjct: 342 DTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPNEITFVAVLVACSHAGKVREGRMYF 401

Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN 491
             MK    IEP ++HY C+VD+L RAG L +A + +++M ++PN  +W TLL ACR H +
Sbjct: 402 NLMKNVFKIEPNIKHYGCMVDILGRAGLLIEAFDFIDTMEIEPNAIIWRTLLGACRVHGD 461

Query: 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
           V L     E L++++ D+ G YVLLSNIYA  G W+   ++RK+M    +KK+ G S+I+
Sbjct: 462 VELGRRANEQLLKMRKDESGDYVLLSNIYASQGEWDGVQKVRKLMDDGGVKKKVGHSLID 521

Query: 552 IDGNIKEFVSGEIFDVQSEELE 573
            D +   F+   +FD +   +E
Sbjct: 522 SDNS---FLMHFLFDSKPNFVE 540


>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
          Length = 560

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/546 (37%), Positives = 312/546 (57%), Gaps = 59/546 (10%)

Query: 9   FSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL-NMDQAER 67
           F   + + +LL+   TT+ + Q+ A++    L  + F +SQ L   T  N+L N      
Sbjct: 70  FDTTSSISTLLKACTTTSTLEQVHARIIRKGLHQDHFIISQFL---TLCNSLSNFSYTTS 126

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           +FN +  P+T + NT I+GY+++ +    +S ++ MKR   + D +TYP ++KAC  + G
Sbjct: 127 VFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCG 186

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
           + EG   HG  V+ G   DVFV+  LI +Y KCG + CA                     
Sbjct: 187 VKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCA--------------------- 225

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM 247
                     R+VFDEM +++ +SW+ MI GY     D+  AR LF+ MP K+ +SWN++
Sbjct: 226 ----------RKVFDEMGERNVVSWTAMIAGY-ASFSDLVEARKLFDEMPEKNAVSWNAI 274

Query: 248 IDGYAKIGDLVAAQQLFNEMPERN--VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           I GY K GDL +A+++F+EMP RN  V +WS +I G                     V+P
Sbjct: 275 ISGYVKCGDLRSARKMFDEMPHRNRDVVAWSALISG--------------------NVKP 314

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI-VQTALIDMYMKCGSLDEARRI 364
           D   ++  +SAC+Q+G+L+L KW+  ++++S I +    V  ALIDM  KCGS+D A ++
Sbjct: 315 DEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKL 374

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F  M K+++ISY  M+ GL ++G G +A+  F++M  EG+  DD+ F  +L ACS +GL 
Sbjct: 375 FEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLV 434

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            EG   F+SMK    I P  +HY+C+VDLL RAG L++A  +++SMP++P+   WG LL 
Sbjct: 435 DEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLG 494

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           AC+ H ++ L EVV + L EL+  + G YVLLSNIYA A  W     +R  MR+R I+K 
Sbjct: 495 ACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKI 554

Query: 545 TGRSVI 550
            G S I
Sbjct: 555 PGCSWI 560


>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 823

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/512 (37%), Positives = 302/512 (58%), Gaps = 38/512 (7%)

Query: 40  LITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSF 99
            +++P  L +LL +        +  A  +F+QI +P+ +M+NT+IRG   ++ P+ A+S 
Sbjct: 6   FLSDPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSL 65

Query: 100 YVNM----KRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIG 155
           Y  M       G+  D  T+PFVL+AC  +     G ++H  VVK G   D FV N LIG
Sbjct: 66  YTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIG 125

Query: 156 MYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIM 215
           M++ CG++G A ++F+                       G+ARE        DA++WS M
Sbjct: 126 MHASCGNLGIAAALFD-----------------------GRARE--------DAVAWSAM 154

Query: 216 IDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
           I G   ++GDI +AR LF+  P+KDL+SWN MI  YAK GD+  A++LF+++PER+V SW
Sbjct: 155 ITGC-ARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSW 213

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
           ++MI GY + G+   AL LF +M   G +PD+++++  +SACA  G LD+G+ +H  +  
Sbjct: 214 NVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSD 273

Query: 336 --SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
             SR    +++  ALIDMY KCGS+  A  +F+SM  K+V ++N ++ GL ++G   E++
Sbjct: 274 MFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESI 333

Query: 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
             F +M    +  D++ F+ VLIACSH G+  +G   F  M+    +EP ++HY C+VD+
Sbjct: 334 DMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDM 393

Query: 454 LSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLY 513
           L RAG L++A   +++M  +PN  +W TLL ACR H  + LA+     L++ + D+ G Y
Sbjct: 394 LGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDY 453

Query: 514 VLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
           VLLSNIYA  G W  + ++RK+M    + KE 
Sbjct: 454 VLLSNIYASVGEWFGSEKMRKLMDDSGVNKEA 485


>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
 gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/545 (36%), Positives = 315/545 (57%), Gaps = 42/545 (7%)

Query: 18  LLQISKTTTHILQILAQLTTNDLITEPFTLSQLL--MSLTSPNTLNMDQAERLFNQIYQP 75
           L Q  K    + QI A +  N L++    + +L+   SL+ P  L    A +LF++I +P
Sbjct: 18  LWQNCKNIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKY--AHKLFDEIPKP 75

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           +  + N ++RG  QS  P+K +S Y  M+++G+  D YT+ FVLKAC  L     G   H
Sbjct: 76  DVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFH 135

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
           G+VV+ GF+ + +V N LI  ++ CG                               ++G
Sbjct: 136 GKVVRHGFVLNEYVKNALILFHANCG-------------------------------DLG 164

Query: 196 KAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIG 255
            A E+FD+  +   ++WS M  GY  K+G I  A  LF+ MP KD ++WN MI G  K  
Sbjct: 165 IASELFDDSAKAHKVAWSSMTSGY-AKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCK 223

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
           ++ +A++LF+   E++V +W+ MI GY   G PKEAL +F+EM   G  PDV++++  +S
Sbjct: 224 EMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLS 283

Query: 316 ACAQVGALDLGKWIHVFMKR-----SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
           ACA +G L+ GK +H+++       S I +   +  ALIDMY KCGS+D A  +F  +  
Sbjct: 284 ACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKD 343

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           +++ ++N +I GL ++   E +++ F +M+   +  +++ F+GV++ACSHSG   EG + 
Sbjct: 344 RDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKY 402

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
           F  M+    IEP ++HY C+VD+L RAG+LE+A   VESM ++PN  +W TLL AC+ + 
Sbjct: 403 FSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYG 462

Query: 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           NV L +   E L+ ++ D+ G YVLLSNIYA  G W+   ++RKM    ++KK TG S+I
Sbjct: 463 NVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLI 522

Query: 551 EIDGN 555
           E D +
Sbjct: 523 EEDDD 527


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/579 (34%), Positives = 325/579 (56%), Gaps = 57/579 (9%)

Query: 40  LITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSF 99
           LI + F  S+L+         ++D    +      PNT+  N  IRG+  S NP++A+  
Sbjct: 6   LIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVL 65

Query: 100 YVN-MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYS 158
           Y   ++  G   DNYTYP + KAC  L  +  G+EI G V+ +GF  D+FV N +I +  
Sbjct: 66  YKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLV 125

Query: 159 KCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP------------- 205
            CG +  AR +F+ S ++DLVSWN ++ G+V  G   +A   + EM              
Sbjct: 126 SCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIG 185

Query: 206 ---------------------QKDAISWSI-----MIDGYRKKKGDISSARILFEHMPIK 239
                                +++ +  ++     ++D Y  K G++ SAR LF+ M  K
Sbjct: 186 VVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMY-MKCGNLESARKLFDSMTNK 244

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
            ++SW +M               LF+EMP+++V  W+ MI GY      KEAL LF EM 
Sbjct: 245 TMVSWTTM---------------LFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQ 289

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
              + PD ++++  +SAC+Q+GALD+G WIH ++++  +++++ + TALIDMY KCG + 
Sbjct: 290 AMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKIT 349

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           +A ++F  +  +N +++  +I+GL ++G    A+  F++M    +  D++ FLG+L AC 
Sbjct: 350 KAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACC 409

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           H GL  EG + F  M     + PKL+HYSC+VDLL RAG LE+A  +++SMP++ +  +W
Sbjct: 410 HGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVW 469

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
           G L  ACR H NV + E     L+++   D G+YVLL+N+Y +A MW+ A + RK+MR+R
Sbjct: 470 GALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQR 529

Query: 540 KIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL-ELVIQ 577
            ++K  G S IE++G + EF+  +    QSE++ E +IQ
Sbjct: 530 GVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQ 568


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/518 (38%), Positives = 309/518 (59%), Gaps = 9/518 (1%)

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
           + ++ +F+Q+ +PN ++ NTMIRG         A+  Y +M+  G L +N+T PFVLKAC
Sbjct: 65  NYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKAC 124

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
              + +  G +IH  +VK G+  DVFV   L+ +Y KC +   A  VF+    K++VSW 
Sbjct: 125 ARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWT 184

Query: 183 LVLRGFVECGEMGKAREVFDEMPQ----KDAISWSIMIDGYRKKKGDISSA----RILFE 234
            ++ G++  G   +A   F ++ +     D+ S  + +     + GD +S     R + +
Sbjct: 185 AIITGYISSGHFREAIGAFKKLLEMGLKPDSFSL-VKVLAACARLGDCTSGEWIDRYISD 243

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
               +++    S++D Y K G+L  A  +F+ MPE+++ SWS MI GYA +G P++AL L
Sbjct: 244 SGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDL 303

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           F +M  + ++PD  +++G +SACA +GALDLG W    M R+    + ++ TALIDMY K
Sbjct: 304 FFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSK 363

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CGS+ +A  IF +M +K+ + +N M+ GL MNG  +     F+ +E  GI  D+  F+G+
Sbjct: 364 CGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGL 423

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L  C+H G   EG + F +MKR   + P +EHY C+VDLL RAG L +A  ++ +MPMKP
Sbjct: 424 LCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKP 483

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           N  +WG LL  C+ H++  LAE V++ L+EL+  + G YV LSNIY+    WE A +IR 
Sbjct: 484 NAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRS 543

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            M++++I+K    S IEIDG + EF+ G+     SE++
Sbjct: 544 TMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKI 581


>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
          Length = 523

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/512 (37%), Positives = 302/512 (58%), Gaps = 38/512 (7%)

Query: 40  LITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSF 99
            +++P  L +LL +        +  A  +F+QI +P+ +M+NT+IRG   ++ P+ A+S 
Sbjct: 6   FLSDPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSL 65

Query: 100 YVNM----KRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIG 155
           Y  M       G+  D  T+PFVL+AC  +     G ++H  VVK G   D FV N LIG
Sbjct: 66  YTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIG 125

Query: 156 MYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIM 215
           M++ CG++G A ++F+                       G+ARE        DA++WS M
Sbjct: 126 MHASCGNLGIAAALFD-----------------------GRARE--------DAVAWSAM 154

Query: 216 IDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
           I G   ++GDI +AR LF+  P+KDL+SWN MI  YAK GD+  A++LF+++PER+V SW
Sbjct: 155 ITGC-ARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSW 213

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
           ++MI GY + G+   AL LF +M   G +PD+++++  +SACA  G LD+G+ +H  +  
Sbjct: 214 NVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSD 273

Query: 336 --SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
             SR    +++  ALIDMY KCGS+  A  +F+SM  K+V ++N ++ GL ++G   E++
Sbjct: 274 MFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESI 333

Query: 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
             F +M    +  D++ F+ VLIACSH G+  +G   F  M+    +EP ++HY C+VD+
Sbjct: 334 DMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDM 393

Query: 454 LSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLY 513
           L RAG L++A   +++M  +PN  +W TLL ACR H  + LA+     L++ + D+ G Y
Sbjct: 394 LGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDY 453

Query: 514 VLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
           VLLSNIYA  G W  + ++RK+M    + KE 
Sbjct: 454 VLLSNIYASVGEWFGSEKMRKLMDDSGVNKEA 485


>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 548

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/545 (37%), Positives = 315/545 (57%), Gaps = 42/545 (7%)

Query: 18  LLQISKTTTHILQILAQLTTNDLITEPFTLSQLL--MSLTSPNTLNMDQAERLFNQIYQP 75
           L Q  K    ++QI A +  N L++    + +L+   SL+ P  L    A +LF +I +P
Sbjct: 18  LWQNCKNFRTLMQIHAFMVVNGLMSNLSVVGELIYSASLSVPGALKY--AHKLFEEIPKP 75

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           +  + N ++RG  QS  P+K ++ Y  M+++G+  D YT+ FVLKAC  L     G  IH
Sbjct: 76  DVSICNHVLRGSAQSLKPEKTVALYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAIH 135

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
           G+VV+ GFL + +V N LI  ++ CG                               ++G
Sbjct: 136 GKVVRHGFLLNEYVKNALILFHANCG-------------------------------DLG 164

Query: 196 KAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIG 255
            A E+FD+  +   ++WS M  GY  K+G I  A  LF+ MP KD ++WN MI G  K  
Sbjct: 165 IASELFDDSAKAHKVAWSSMTSGY-AKRGKIDEAMRLFDEMPDKDQVAWNVMITGCLKCR 223

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
           ++ +A++LF+   E++V +W+ MI GY   G PKEAL +F+EM   G  PDV++++  +S
Sbjct: 224 EMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALSIFKEMRDAGEHPDVVTILSLLS 283

Query: 316 ACAQVGALDLGKWIHVFMKR-----SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
           ACA +G L+ GK +H+++       S I +   +  ALIDMY KCGS+D A  +F  M  
Sbjct: 284 ACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGMKD 343

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           +++ ++N +I GL ++   E +++ F +M+   +  +++ F+GV++ACSHSG   EG + 
Sbjct: 344 RDLSTWNTLIVGLALH-HAEGSVEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKY 402

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
           F  M+    IEP ++HY C+VD+L RAG LE+A   VESM ++PN  +W TLL AC+ + 
Sbjct: 403 FSLMRDMYNIEPNIKHYGCMVDMLGRAGLLEEAFMFVESMKIEPNAIVWRTLLGACKIYG 462

Query: 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           NV L +   E L+ ++ D+ G YVLLSNIYA  G W+   ++RKM    ++KK TG S+I
Sbjct: 463 NVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGISLI 522

Query: 551 EIDGN 555
           E D +
Sbjct: 523 EEDDD 527


>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
          Length = 523

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/512 (37%), Positives = 302/512 (58%), Gaps = 38/512 (7%)

Query: 40  LITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSF 99
            +++P  L +LL +        +  A  +F+QI +P+ +M+NT+IRG   ++ P+ A+S 
Sbjct: 6   FLSDPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSL 65

Query: 100 YVNM----KRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIG 155
           Y  M       G+  D  T+PFVL+AC  +     G ++H  VVK G   D FV N LIG
Sbjct: 66  YTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIG 125

Query: 156 MYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIM 215
           M++ CG++G A ++F+                       G+ARE        DA++WS M
Sbjct: 126 MHASCGNLGIAAALFD-----------------------GRARE--------DAVAWSAM 154

Query: 216 IDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
           I G   ++GDI +AR LF+  P+KDL+SWN MI  YAK GD+  A++LF+++PER+V SW
Sbjct: 155 ITGC-ARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSW 213

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
           ++MI GY + G+   AL LF +M   G +PD+++++  +SACA  G LD+G+ +H  +  
Sbjct: 214 NVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSD 273

Query: 336 --SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
             SR    +++  ALIDMY KCGS+  A  +F+SM  K+V ++N ++ GL ++G   E++
Sbjct: 274 MFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESI 333

Query: 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
             F +M    +  D++ F+ VLIACSH G+  +G   F  M+    +EP ++HY C+VD+
Sbjct: 334 DMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCIVDM 393

Query: 454 LSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLY 513
           L RAG L++A   +++M  +PN  +W TLL ACR H  + LA+     L++ + D+ G Y
Sbjct: 394 LGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDY 453

Query: 514 VLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
           VLLSNIYA  G W  + ++RK+M    + KE 
Sbjct: 454 VLLSNIYASVGEWFGSEKMRKLMDDSGVNKEA 485


>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 593

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/571 (36%), Positives = 329/571 (57%), Gaps = 43/571 (7%)

Query: 22  SKTTTHILQILAQLTTNDLITEPFTLSQLLMSLT-SPNTLNMDQAERLFNQIYQPNTYMH 80
           S +   I ++ AQL    +  +P ++S+++     SP +L   +A  +FNQI +P   + 
Sbjct: 24  STSLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSPQSL--PKAHFVFNQIQRPTLLVW 81

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N MI G ++S  P  A+ FY  M  KG+   + T+ F+ K+C  +  + +G  +    +K
Sbjct: 82  NHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMK 141

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
           +GF   +FV N LI MY   G +  A+ VF+G   +D+VSWN ++ G+ +     K  ++
Sbjct: 142 LGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDL 201

Query: 201 FDEMP----QKDAIS-------------WSI----------------------MIDGYRK 221
           F EM     + D+++             W +                      +ID Y  
Sbjct: 202 FREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMY-G 260

Query: 222 KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           ++G I  A  +F  M  K+++SWN+MI GYAK+G+LVAA++LFNEMP R+V SW+ MI G
Sbjct: 261 RRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIG 320

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
           Y+      EA+ LF+EM+   V+PD I+V  A+SACA +G+LD G+ +H ++++  I  D
Sbjct: 321 YSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSD 380

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
           + V  +LIDMY KCG +++A ++F  M  ++ +S+  +I+GL +NGF E AL  F QM  
Sbjct: 381 VFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLK 440

Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
           EGI      F+GVL+AC+H GL  +G   F+SM+    + P+++HY C+VDLL R+G L+
Sbjct: 441 EGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLD 500

Query: 462 QALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521
            A N ++ MP+ P++ +W  LL AC+ H N+ LAE+V + L+ L   + G YVL S+ YA
Sbjct: 501 MAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPSNNGNYVLSSSTYA 560

Query: 522 DAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
            +  W+  ++IRK+M    ++K    S IE+
Sbjct: 561 GSDRWDDVIKIRKLMEVTNLQKPCAYSSIEV 591


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/558 (35%), Positives = 309/558 (55%), Gaps = 70/558 (12%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           +++  V +L+       + +I A +    L    F +++  M     +    + A  LF 
Sbjct: 13  MEDIFVPILKNCPNIVELKKIHAHIVKFSLSQSSFLVTK--MVDVCNHHAETEYANLLFK 70

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM-----KRKGLLVDNYTYPFVLKACGVL 125
           ++  PN +++N MIR Y  +     A++ Y  M         +  D +T+PFV+K+C  L
Sbjct: 71  RVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGL 130

Query: 126 MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL 185
           M    G ++HG V K G   +  V N L+ MY                            
Sbjct: 131 MCYDLGKQVHGHVFKFGQKSNTVVENSLVEMY---------------------------- 162

Query: 186 RGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWN 245
              V+C  +  A +VF+EM ++                                D +SWN
Sbjct: 163 ---VKCDSLDDAHKVFEEMTER--------------------------------DAVSWN 187

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           ++I G+ ++G +  A+ +F EM ++ +FSW+ ++ GYA+ G   +AL  FR M   G+ P
Sbjct: 188 TLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEP 247

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D IS++  + ACAQ+GAL+LGKWIH +  ++    ++ V  ALI+MY KCGS+DE RR+F
Sbjct: 248 DEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLF 307

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
             M +++VIS++ MI GL  +G   EA++ F +M+   I  + + F+G+L AC+H+GL  
Sbjct: 308 DQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLN 367

Query: 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
           EG R F+SMKR   IEP +EHY CLV+LL  +G L+QAL +++ MPMKP+ A+WG+LL +
Sbjct: 368 EGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSS 427

Query: 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
           CR+H N+ +A + +E L+EL+  D G YVLLSN+YAD G W+   R+RK+MR + +KK  
Sbjct: 428 CRSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTP 487

Query: 546 GRSVIEIDGNIKEFVSGE 563
           G S IE+D  ++EF SG+
Sbjct: 488 GCSSIEVDNMVQEFASGD 505


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/567 (37%), Positives = 322/567 (56%), Gaps = 40/567 (7%)

Query: 33  AQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSN 92
           AQ+  + L  E  TL +L+      +  ++  A+R+F+QI QPN +M+N++IRGY+ S +
Sbjct: 9   AQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDD 68

Query: 93  PQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNG 152
           P  A+  +  M   GL  + +T PFVLKACG      E   +HG  +K+G    VFV N 
Sbjct: 69  PIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNA 128

Query: 153 LIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----- 207
           LI +Y  CG + CAR +F+    K LVSWN ++ G+   G   +A  +F +M +      
Sbjct: 129 LIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPD 188

Query: 208 ----------------------------------DAISWSIMIDGYRKKKGDISSARILF 233
                                             D I  + ++D Y  K G++ SA+ +F
Sbjct: 189 GFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMY-AKCGNLHSAQAIF 247

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
           +    K+++SW SMI  YA+ G +  A+Q+F++MP +NV SW+ MI  Y + G  +EAL 
Sbjct: 248 DRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALD 307

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           LF +M    V PD  +++  ++AC+Q+G L +GK IH ++  ++    + +  +LIDMY 
Sbjct: 308 LFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYA 367

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCG +  A  IF  M  KN++S+NV+I  L ++G G EA+K F +M+ +G   D++   G
Sbjct: 368 KCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTG 427

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           +L ACSHSGL   G   F  M     +  ++EHY+C+VDLL R G L +A+ ++  MPMK
Sbjct: 428 LLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMPMK 487

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
           P++ +WG LL ACR H NV + + +++ L+EL+    GLYVL+SNIY +A  WE   +IR
Sbjct: 488 PDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIR 547

Query: 534 KMMRKRKIKKETGRSVIEIDGNIKEFV 560
           K+M  R IKK    S IEIDG I EF+
Sbjct: 548 KLMIDRGIKKGRAISSIEIDGCIYEFM 574


>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/584 (35%), Positives = 320/584 (54%), Gaps = 62/584 (10%)

Query: 4   LAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMD 63
           L+ +    K   + LL+  K+  H+ QI  Q+          TL++ ++  T P+  N+ 
Sbjct: 24  LSTSSHFTKKSCIFLLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLH 83

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            AER+FN I  P  +++N +I+ +T++ + +KA+  +  ++ +GL  DN+TYPFV KA G
Sbjct: 84  YAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIG 143

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            L  + EG +++G VVK G   D +V N L+ MY+                         
Sbjct: 144 CLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYA------------------------- 178

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY---RKKKGDISSARILFEHMPIKD 240
                 E G +   R+VF+EMPQ+D +SW+++I GY   R+ +  +   R +F  MPIK 
Sbjct: 179 ------EVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRQIFNDMPIKT 232

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
           +I W SM+ GY   G L  A++LF   P R+V  W+ MI+GY Q     +A+ LFREM  
Sbjct: 233 VICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQI 292

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
           + V PD  +++  ++                         D +V TALI+MY KCG +++
Sbjct: 293 KRVSPDRFTLVALLT-------------------------DAVVGTALIEMYAKCGFIEK 327

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           +  IF  + +K+  S+  +I GL MNG   +AL+ FA+M   G+  DD+ F+GVL ACSH
Sbjct: 328 SLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSH 387

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN---LA 477
            GL  EG + F+SM     IEPKLEHY CL+DLL RAG+L++A  ++E  P   N   + 
Sbjct: 388 GGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVP 447

Query: 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537
           L+G LL ACR H NV + E V + LV +++ D  ++ LL+NIYA A  WE   ++R+ M+
Sbjct: 448 LYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMK 507

Query: 538 KRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
              +KK  G S +E++G + EF+ G+    +  E+  ++ S  K
Sbjct: 508 DLGVKKVPGCSSVEVNGIVHEFLVGDASHPEMREIYSMLDSIAK 551


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/601 (35%), Positives = 339/601 (56%), Gaps = 55/601 (9%)

Query: 14  PLVSLLQISKTTT--HILQILAQLTTNDLITE--PFTL-SQLLMSLT-------SPNTLN 61
           PL+++L      +   +LQ+ A L T  L++   PF L S+L+ +L        SP  L 
Sbjct: 8   PLLAILSTRHPPSAGRLLQLHAHLLTAGLMSSRSPFPLASRLVEALAHSDDPRHSPRPLL 67

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNP---QKALSFYVNMKRKGLLVDNYTYPFV 118
              A          +   +N  +R  +  ++     + L  Y ++ R     D+ T+PF+
Sbjct: 68  HALALLASLPTPPDSASPYNAALRALSLCTDRGLVTRCLPLYCSLLRSAR-PDHLTFPFL 126

Query: 119 LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDL 178
           LKAC  L     G  + G V+ +GF  DVFVVN  +   + C  M  AR +F+GS ++DL
Sbjct: 127 LKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDL 186

Query: 179 VSWNLVLRGFVECGEMGKAREVF-----------DEMPQKDAISWSIMI---------DG 218
           VSWN ++ G+V  G   +A E+F           DE+     +S S  +          G
Sbjct: 187 VSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHG 246

Query: 219 YRK-------------------KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVA 259
           Y +                   K GD+  A+ +FE +  K ++SW +MI GYA+ G +  
Sbjct: 247 YVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDD 306

Query: 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
           A+++F+EMPER+VF W+ ++ GY Q    KEAL LF +M    V PD I+++  +SAC+Q
Sbjct: 307 ARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQ 366

Query: 320 VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVM 379
           +GAL++G W+H ++ R R+++ +++ T L+DMY KCG++++A R+F  + +KN +++  M
Sbjct: 367 LGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAM 426

Query: 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439
           I+GL  +G  + A+K F +M   G+  D++ F+GVL AC H+GL  EG   F  M     
Sbjct: 427 ISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYH 486

Query: 440 IEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVV 499
           +E K++HYSC+VDLL RAG L++A ++V +MPM+P+  +WG L  ACR H N+TL E   
Sbjct: 487 LERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGALFFACRMHGNITLGEKAA 546

Query: 500 EGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEF 559
             LVEL   D G+YVLL+N+YA+A M + A ++R MMR   ++K  G S IE++G + EF
Sbjct: 547 MKLVELDPGDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEF 606

Query: 560 V 560
           +
Sbjct: 607 I 607


>gi|224092607|ref|XP_002309680.1| predicted protein [Populus trichocarpa]
 gi|222855656|gb|EEE93203.1| predicted protein [Populus trichocarpa]
          Length = 500

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/490 (39%), Positives = 289/490 (58%), Gaps = 4/490 (0%)

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           P     N +I+ +  + +  +A+  YVN++  G   DN+T+P +LKA G       G  +
Sbjct: 13  PEMRQWNEIIKKHVLNGDAVQAMVTYVNVQEIGFHADNFTFPILLKAAGSWSSPCIGLAL 72

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           HG+ +K GF   VFV   L+ MY     +  A  VFE   +KD+V+WN +L  +    +M
Sbjct: 73  HGQTIKAGFSSHVFVQTALLNMYRSHSCVADACKVFEKMPVKDVVAWNSILDAYASTDQM 132

Query: 195 GKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKI 254
             A +VF+ MP KD  S++IMI GY    G   SAR +F++M  KD++SWNSMI  Y + 
Sbjct: 133 DDALKVFNSMPLKDLSSFNIMISGY-SSIGKTLSARSIFDNMAEKDIVSWNSMISAYIQG 191

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
            D+  A  LF EMP +N+ +W+ M+ G+ Q+    E L LF EM      PD ++V G +
Sbjct: 192 EDMERACDLFREMPAKNIITWNTMVKGFLQNQLYAEVLDLFDEMKTTNCLPDYLTVTGVL 251

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
           SACA  G+L  G  +H++   + +     V TALIDMY KCGS+ +  ++FY    K++ 
Sbjct: 252 SACAHSGSLKKGTEVHIYAIDNGLASSPHVTTALIDMYAKCGSIQQGLQVFYKSQVKDIY 311

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434
            +N +I+GL ++G G  AL  F +M       DD+ F+G+L ACSHSGL  EG ++F SM
Sbjct: 312 CWNALISGLALHGHGYAALNIFNKMRKNHTRPDDITFIGLLSACSHSGLVQEGSQLFYSM 371

Query: 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTL 494
           ++  GI PK+EHY C+VDLLSRA  L+ AL ++++MP KP  A+ G LL AC  HQ++ +
Sbjct: 372 QKEFGISPKIEHYGCMVDLLSRARHLDCALQLIKTMPFKPGEAILGALLSACIVHQDLEV 431

Query: 495 AEVVVEGLVELKAD--DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
            E VV+ LV  + +    G  ++ SN+YA  G WE A + R+MM    I K  G SV+E+
Sbjct: 432 GERVVK-LVSSRGNYLSDGELMMFSNLYASCGQWEEANKWREMMNDTGIVKTAGFSVVEV 490

Query: 553 DGNIKEFVSG 562
           +G   +F++G
Sbjct: 491 NGKFHKFLAG 500



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 134/323 (41%), Gaps = 49/323 (15%)

Query: 58  NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF 117
           +T  MD A ++FN +   +    N MI GY+       A S + NM  K           
Sbjct: 128 STDQMDDALKVFNSMPLKDLSSFNIMISGYSSIGKTLSARSIFDNMAEK----------- 176

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
                                       D+   N +I  Y +   M  A  +F     K+
Sbjct: 177 ----------------------------DIVSWNSMISAYIQGEDMERACDLFREMPAKN 208

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK--------KKGDISSA 229
           +++WN +++GF++     +  ++FDEM   + +   + + G           KKG     
Sbjct: 209 IITWNTMVKGFLQNQLYAEVLDLFDEMKTTNCLPDYLTVTGVLSACAHSGSLKKGTEVHI 268

Query: 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
             +   +     ++  ++ID YAK G +    Q+F +   ++++ W+ +I G A HG+  
Sbjct: 269 YAIDNGLASSPHVT-TALIDMYAKCGSIQQGLQVFYKSQVKDIYCWNALISGLALHGHGY 327

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS-RITMDMIVQTAL 348
            AL +F +M     RPD I+ +G +SAC+  G +  G  +   M++   I+  +     +
Sbjct: 328 AALNIFNKMRKNHTRPDDITFIGLLSACSHSGLVQEGSQLFYSMQKEFGISPKIEHYGCM 387

Query: 349 IDMYMKCGSLDEARRIFYSMTKK 371
           +D+  +   LD A ++  +M  K
Sbjct: 388 VDLLSRARHLDCALQLIKTMPFK 410



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 68/324 (20%), Positives = 119/324 (36%), Gaps = 68/324 (20%)

Query: 236 MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE--------------RNVFSWSIMIDG 281
           +P  ++  WN +I  +   GD V A   +  + E              +   SWS    G
Sbjct: 10  LPSPEMRQWNEIIKKHVLNGDAVQAMVTYVNVQEIGFHADNFTFPILLKAAGSWSSPCIG 69

Query: 282 YAQHGNPKEA------------LYLFREMLCQGVR---------PDVISVMGAISACAQV 320
            A HG   +A            L ++R   C              DV++    + A A  
Sbjct: 70  LALHGQTIKAGFSSHVFVQTALLNMYRSHSCVADACKVFEKMPVKDVVAWNSILDAYAST 129

Query: 321 GALDLGKWIHVFMKRSRIT---------------------------MDMIVQTALIDMYM 353
             +D    +   M    ++                            D++   ++I  Y+
Sbjct: 130 DQMDDALKVFNSMPLKDLSSFNIMISGYSSIGKTLSARSIFDNMAEKDIVSWNSMISAYI 189

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           +   ++ A  +F  M  KN+I++N M+ G   N    E L  F +M+T     D L   G
Sbjct: 190 QGEDMERACDLFREMPAKNIITWNTMVKGFLQNQLYAEVLDLFDEMKTTNCLPDYLTVTG 249

Query: 414 VLIACSHSGLATEGYRI-FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
           VL AC+HSG   +G  +   ++       P +   + L+D+ ++ G ++Q L +     +
Sbjct: 250 VLSACAHSGSLKKGTEVHIYAIDNGLASSPHVT--TALIDMYAKCGSIQQGLQVFYKSQV 307

Query: 473 KPNLALWGTLL--LACRNHQNVTL 494
           K ++  W  L+  LA   H    L
Sbjct: 308 K-DIYCWNALISGLALHGHGYAAL 330



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 110/245 (44%), Gaps = 15/245 (6%)

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326
           +P   +  W+ +I  +  +G+  +A+  +  +   G   D  +    + A     +  +G
Sbjct: 10  LPSPEMRQWNEIIKKHVLNGDAVQAMVTYVNVQEIGFHADNFTFPILLKAAGSWSSPCIG 69

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
             +H    ++  +  + VQTAL++MY     + +A ++F  M  K+V+++N ++      
Sbjct: 70  LALHGQTIKAGFSSHVFVQTALLNMYRSHSCVADACKVFEKMPVKDVVAWNSILDAYAST 129

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS-GLATEGYRIFQSMKRHCGIEPKLE 445
              ++ALK F  M     P  DL    ++I+   S G       IF +M      E  + 
Sbjct: 130 DQMDDALKVFNSM-----PLKDLSSFNIMISGYSSIGKTLSARSIFDNMA-----EKDIV 179

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
            ++ ++    +  ++E+A ++   MP K N+  W T++      QN   AE V++   E+
Sbjct: 180 SWNSMISAYIQGEDMERACDLFREMPAK-NIITWNTMVKGFL--QNQLYAE-VLDLFDEM 235

Query: 506 KADDC 510
           K  +C
Sbjct: 236 KTTNC 240


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/552 (35%), Positives = 312/552 (56%), Gaps = 65/552 (11%)

Query: 14  PLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSL-TSPNTLNMDQAERLFNQI 72
           P++S  +++ + + + Q  A +  + LI   F  S+L+ S+ T+ +   +  A  +F++I
Sbjct: 9   PILSFAEMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRI 68

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
             PN+YM NT+IR Y  S  P+ AL+ +  M    +L D YT+ F LK+CG   G+ EG 
Sbjct: 69  PNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGR 128

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           +IHG V+K G L D                              DL   N ++  +  CG
Sbjct: 129 QIHGHVLKTG-LGD------------------------------DLFIQNTLIHLYASCG 157

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA 252
            +  AR + D M ++                                D++SWN+++  YA
Sbjct: 158 CIEDARHLLDRMLER--------------------------------DVVSWNALLSAYA 185

Query: 253 KIGDL-VAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
           + G + +A++++F E P +NV SW+ MI GY+  G   E L LF +M   GV+PD  +++
Sbjct: 186 ERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLV 245

Query: 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
             +SACA VGAL  G+W+H ++ ++ I++D  V TAL+DMY KCGS+++A  +F S  +K
Sbjct: 246 SVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRK 305

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           ++ ++N +I+GL  +G G+ AL+ F++M  EG   +++ F+ VL ACS +GL  EG  +F
Sbjct: 306 DISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMF 365

Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN 491
             M    GI+P +EHY C+VDLL R G LE+A  +V+ MP K    +W +LL ACRNH N
Sbjct: 366 NLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGN 425

Query: 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
           V LAE V + L+EL   +   +V LSN+YA  G W+  + +R+ MR + ++K+ G S+IE
Sbjct: 426 VELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIE 485

Query: 552 IDGNIKEFVSGE 563
           +DG + EF++GE
Sbjct: 486 VDGTVYEFLAGE 497


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/529 (35%), Positives = 307/529 (58%), Gaps = 35/529 (6%)

Query: 45  FTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMK 104
           + ++Q + +L++ N   MD A   + Q+  PN +++N MI+G+ QS  P +AL  YV M 
Sbjct: 15  YLMNQFISALSTFN--RMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQML 72

Query: 105 RKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG 164
           R  +   +YT+P ++KACG++  L     +HG V + GF   VFV   L+  YS  G + 
Sbjct: 73  RANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRIE 132

Query: 165 CARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKG 224
            +  VF+    +D+ +W  ++ G V  G+M  A  +FD MP ++  +W+ +IDGY + + 
Sbjct: 133 ESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLR- 191

Query: 225 DISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQ 284
           ++  A +LF  MP +D+ISW +MI+ Y                               +Q
Sbjct: 192 EVDVAELLFNQMPARDIISWTTMINCY-------------------------------SQ 220

Query: 285 HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIV 344
           +   +EAL +F EM   G+ PD +++   ISACA +GALDLGK IH ++ +    +D+ +
Sbjct: 221 NKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYI 280

Query: 345 QTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGI 404
            +ALIDMY KCGSLD +  +F+ + +KN+  +N +I GL ++G+ EEAL  F +ME E I
Sbjct: 281 GSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKI 340

Query: 405 PKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL 464
             + + F+ VL AC+H+GL  EG + F SM R   I P +EHY C+VDLLS+AG LE+AL
Sbjct: 341 KPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEAL 400

Query: 465 NIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524
            ++ +M ++PN  +WG LL  C+ H+N+ +A+V    L+ L+  + G Y LL N+ A+  
Sbjct: 401 QLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAANKLMVLEPGNSGYYTLLVNMNAEVN 460

Query: 525 MWEHALRIRKMMRKRKIKKE-TGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            W  A +IR  M+++ ++K   G S IE++  + +F + +     S+E+
Sbjct: 461 RWGEAAKIRLTMKEQGVEKRCPGSSWIEMESQVHQFAASDKSHAASDEI 509


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/591 (34%), Positives = 333/591 (56%), Gaps = 31/591 (5%)

Query: 1   MKTLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL 60
           +K+ A    S  + +++L  +     H+LQ    LTT  LI    +    L  L +P+ L
Sbjct: 4   LKSRALHHLSHTHKVLALPSLHHFYDHLLQCCTSLTTLKLIHSSLSTRGFL--LHTPHFL 61

Query: 61  -----------NMDQAERLFNQ--------IYQPNTYMHNTMIRGYTQSSNPQKALSFYV 101
                      ++  A  LF+            PN+++ NTM+R Y  +    +A+  Y+
Sbjct: 62  ARLIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYI 121

Query: 102 NMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCG 161
            M+R G+ V+N+TYPFVLK C   +G V G  +HG+VV+ GF  D+FV   L+ MY+KCG
Sbjct: 122 YMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCG 181

Query: 162 HMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK 221
            +G A  VF+   I+D+V W  ++  + +     KA  +F +M ++  +   I       
Sbjct: 182 EIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVAS 241

Query: 222 KKGDISSARILFE-------HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
             G +   R+          +  I D+   NS++  YAK G++  A+ +F+ M ERN  S
Sbjct: 242 AVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGIS 301

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W+ M+ GY Q+G P +AL LF +M      P+ ++ +  +SAC+ +G+  LG+ +H F+ 
Sbjct: 302 WNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVI 361

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYS--MTKKNVISYNVMIAGLGMNGFGEEA 392
            S++ +D  ++ A++DMYMKCG LD A  +F +  + +++V S+NV+I+G G++G G+EA
Sbjct: 362 SSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEA 421

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
           L+ F++M+ EG+  +D+ F  +L ACSH+GL  EG + F  M +   + P+++HY+C+VD
Sbjct: 422 LELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTK-LSVRPEMKHYACMVD 480

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
           +L RAG L +A  +++ +P +P+  +WG LLLACR H N  L E+    L +L+ +  G 
Sbjct: 481 MLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGY 540

Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           YVL+SNIYA +  W+    +R+ M+ R +KK    SVIE    +  F + +
Sbjct: 541 YVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTAD 591


>gi|225430506|ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 517

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/486 (39%), Positives = 286/486 (58%), Gaps = 4/486 (0%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N +I+      NP +A+  YV MKR G   DN+T+P +LKA   L     G  +HG+ +K
Sbjct: 23  NKVIKRRVSQGNPDQAILAYVEMKRVGFDADNFTFPVLLKAASSLSSCCIGFALHGQAMK 82

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
            GF    FV   L+ MYS  G +  A  VFE   +KD+V WN +L  +  CG+M  A ++
Sbjct: 83  TGFSGHCFVGTALLDMYSAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASCGQMDNAMKL 142

Query: 201 FDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAA 260
           FD MP KD  S++IMI GY  K G  ++AR +F+ +  KD++SWNSMI     +GD+  A
Sbjct: 143 FDNMPLKDLASFNIMISGY-AKIGKKAAARSIFDRIHAKDIVSWNSMILACTNVGDMGNA 201

Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
           + LF+ MP++NV +W+ MI GY       EA+ LF EM       D ++V   +SACA +
Sbjct: 202 RNLFDVMPKKNVITWNTMISGYLHAQLYAEAVDLFDEMKAGNHEADHLTVTLVLSACAHL 261

Query: 321 GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMI 380
           G L  G  +HV+ +  R+     V T+LIDMY KCG++  +  +FY    K++  +N +I
Sbjct: 262 GWLGKGTEMHVYAQDHRLASSPHVATSLIDMYAKCGTIQRSLEVFYKSQVKDIYCWNAII 321

Query: 381 AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGI 440
           +GL ++G+G  A+K   +M   G+  D++ F+G+L ACSH  L  EG R+F  M++  G+
Sbjct: 322 SGLALHGYGHAAVKLLDKMRDNGVRPDEITFIGLLSACSHRSLVQEGCRLFDCMEKEFGL 381

Query: 441 EPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVE 500
            PKLEHY C+VDLL RAG L+ A  ++++MP +P  ++ G LL AC  HQ++   E V+ 
Sbjct: 382 PPKLEHYGCMVDLLGRAGFLDPAFQLIKAMPFEPGESILGALLGACVIHQDLETGEKVIN 441

Query: 501 GLVELKADDC--GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKE 558
            L+  KA     G +++  N+YA  G W+ A R R+ M +  I K  G S IE+DG    
Sbjct: 442 -LITSKAHHVSDGEFMMFVNLYASCGQWKEANRWRERMNESGIAKTAGGSTIEVDGKFYR 500

Query: 559 FVSGEI 564
           F++G+I
Sbjct: 501 FLAGDI 506



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 99/227 (43%), Gaps = 12/227 (5%)

Query: 52  MSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVD 111
           M L   N  +M  A  LF+ + + N    NTMI GY  +    +A+  +  MK      D
Sbjct: 188 MILACTNVGDMGNARNLFDVMPKKNVITWNTMISGYLHAQLYAEAVDLFDEMKAGNHEAD 247

Query: 112 NYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE 171
           + T   VL AC  L  L +GTE+H             V   LI MY+KCG +  +  VF 
Sbjct: 248 HLTVTLVLSACAHLGWLGKGTEMHVYAQDHRLASSPHVATSLIDMYAKCGTIQRSLEVFY 307

Query: 172 GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDIS 227
            S++KD+  WN ++ G    G    A ++ D+M     + D I++  ++     +     
Sbjct: 308 KSQVKDIYCWNAIISGLALHGYGHAAVKLLDKMRDNGVRPDEITFIGLLSACSHRSLVQE 367

Query: 228 SARILFEHM------PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
             R LF+ M      P K L  +  M+D   + G L  A QL   MP
Sbjct: 368 GCR-LFDCMEKEFGLPPK-LEHYGCMVDLLGRAGFLDPAFQLIKAMP 412



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 79/378 (20%), Positives = 156/378 (41%), Gaps = 57/378 (15%)

Query: 1   MKTLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL 60
           MKT  +    +   L+ +        H  ++  ++   D++      + +L +  S    
Sbjct: 81  MKTGFSGHCFVGTALLDMYSAFGAIDHATKVFEEMGVKDVVV----WNSMLAAYASCG-- 134

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            MD A +LF+ +   +    N MI GY +      A S +                    
Sbjct: 135 QMDNAMKLFDNMPLKDLASFNIMISGYAKIGKKAAARSIF-------------------- 174

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
                        IH +        D+   N +I   +  G MG AR++F+    K++++
Sbjct: 175 -----------DRIHAK--------DIVSWNSMILACTNVGDMGNARNLFDVMPKKNVIT 215

Query: 181 WNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMID-----GYRKKKGDISSARI 231
           WN ++ G++      +A ++FDEM     + D ++ ++++      G+  K  ++     
Sbjct: 216 WNTMISGYLHAQLYAEAVDLFDEMKAGNHEADHLTVTLVLSACAHLGWLGKGTEMHV--Y 273

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
             +H          S+ID YAK G +  + ++F +   ++++ W+ +I G A HG    A
Sbjct: 274 AQDHRLASSPHVATSLIDMYAKCGTIQRSLEVFYKSQVKDIYCWNAIISGLALHGYGHAA 333

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALID 350
           + L  +M   GVRPD I+ +G +SAC+    +  G +      K   +   +     ++D
Sbjct: 334 VKLLDKMRDNGVRPDEITFIGLLSACSHRSLVQEGCRLFDCMEKEFGLPPKLEHYGCMVD 393

Query: 351 MYMKCGSLDEARRIFYSM 368
           +  + G LD A ++  +M
Sbjct: 394 LLGRAGFLDPAFQLIKAM 411



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 20/214 (9%)

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W+ +I      GNP +A+  + EM   G   D  +    + A + + +  +G  +H    
Sbjct: 22  WNKVIKRRVSQGNPDQAILAYVEMKRVGFDADNFTFPVLLKAASSLSSCCIGFALHGQAM 81

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
           ++  +    V TAL+DMY   G++D A ++F  M  K+V+ +N M+A     G  + A+K
Sbjct: 82  KTGFSGHCFVGTALLDMYSAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASCGQMDNAMK 141

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR-----IFQSMKRHCGIEPKLEHYSC 449
            F  M     P  DL    ++I    SG A  G +     IF  +         +  ++ 
Sbjct: 142 LFDNM-----PLKDLASFNIMI----SGYAKIGKKAAARSIFDRIH-----AKDIVSWNS 187

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
           ++   +  G++  A N+ + MP K N+  W T++
Sbjct: 188 MILACTNVGDMGNARNLFDVMP-KKNVITWNTMI 220


>gi|345505226|gb|AEN99837.1| chlororespiratory reduction 4, partial [Lobularia maritima]
          Length = 570

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/520 (39%), Positives = 301/520 (57%), Gaps = 35/520 (6%)

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           + ++ N +I+ ++   +P++AL    +M    + VD ++   V KAC  L    EG +IH
Sbjct: 49  DPFLWNAVIKSHSHGVDPRQALFLLCSMIENNVPVDKFSLSLVTKACSRLGFAKEGMQIH 108

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
           G + K     D+F+ N LIG+Y KC  +G AR VF+    +D VS+N ++ G+V+CG + 
Sbjct: 109 GFLTKTVICSDLFLQNCLIGLYIKCSCLGYARQVFDRMPQRDSVSYNSMIDGYVKCGLIE 168

Query: 196 KAREVFDEMPQ--KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAK 253
            ARE+FD MP+  K+ ISW+ MI GY +++  +  A  LF  MP KDLISWNS+IDGY K
Sbjct: 169 SARELFDLMPKEKKNLISWNSMIGGYAQREDGVDIASKLFAEMPEKDLISWNSLIDGYVK 228

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV---------- 303
            G +  A+ LF+ MP R+V +W+ MIDGYA+ G   +A  LF  M  + V          
Sbjct: 229 HGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHKAKSLFDVMPHRDVVAYNSMMGGY 288

Query: 304 ----------------------RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
                                  PD  +++  +SA AQ+G L     IH+++   R  +D
Sbjct: 289 VQNKYHMEALEVFYDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIVEKRFLLD 348

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
             +  ALIDMY KCGS+ +A  +F  +  K++  +N MI GL ++G GE A     ++E 
Sbjct: 349 GKLGVALIDMYSKCGSIQQAMAVFEGIENKSIDHWNAMIGGLAVHGLGEAAFDMLMEIEK 408

Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
             I  D + F+GVL ACSHSGL  EG   F+ M+R   IEP+L+HY C+VDLL+R+G +E
Sbjct: 409 RFIKPDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDLLARSGSIE 468

Query: 462 QALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVV-EGLVELKADDCGLYVLLSNIY 520
            A +++  MP++PN  +W T L AC +H+     E+VV E L+     +   YVLLSN+Y
Sbjct: 469 LAKHLISEMPIEPNDVIWRTFLNACSHHKEFETRELVVAENLILQAGYNPSSYVLLSNMY 528

Query: 521 ADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
           A   MWE   R+R MM++RKI+K  G S IE+DG + EF+
Sbjct: 529 ASFEMWEDVRRVRTMMKERKIEKVPGCSWIELDGKVHEFL 568


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/570 (35%), Positives = 327/570 (57%), Gaps = 46/570 (8%)

Query: 19  LQISKTTTHILQILAQLTTNDLITEPFTLSQLLMS---LTSPNTLN-MDQAERLFNQIYQ 74
           L+  KT   + Q+  Q+T N L   P TL++L+ +   + SP +L+   +A  LF +  +
Sbjct: 32  LRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVR 91

Query: 75  PNT--YMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
            +   +M N++IRGY+ +   ++A+  YV M   G+  ++YT+PFVL  C  +    EG 
Sbjct: 92  SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGI 151

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           ++HG VVKMG   DVF+ N LI  Y+                               ECG
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYA-------------------------------ECG 180

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA 252
            M    +VF+ M +++ +SW+ +I GY +      +  + FE +   + +  N+++D Y 
Sbjct: 181 HMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEML---NKVMVNALVDMYM 237

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
           K G + AA++LF+E  +RN+  ++ ++  YA+ G  +EAL +  EML QG RPD ++++ 
Sbjct: 238 KCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLS 297

Query: 313 AISACAQVGALDLGK-----WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           AISA AQ+  L  GK     W+H +++++ I  DM + TAL+DM+ +CG    A ++F  
Sbjct: 298 AISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNK 357

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           MT+++V ++   I  + M G GE A   F QM  +G+  D ++F+ VL ACSH G   +G
Sbjct: 358 MTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQG 417

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
             IF  M+ H GI P++EHY C+VDLL RAG L +A ++++SMPM+PN  +WG+LL ACR
Sbjct: 418 LHIFSLMEDH-GISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACR 476

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
            H+NV +A    E + EL     G++VLLSNIYA AG W    R+R  +R++ ++K  G 
Sbjct: 477 VHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGS 536

Query: 548 SVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           S ++++G I EF SG+    +   + L++Q
Sbjct: 537 SSVQVNGVIHEFTSGDESHPEMTHIALMLQ 566


>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 661

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/614 (34%), Positives = 331/614 (53%), Gaps = 48/614 (7%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           + +PL++LL+   +    LQ+ A LT + L    F  S+LL          +D A  +  
Sbjct: 36  VTHPLLALLESCASFPRFLQLHALLTVSGLAAHRFPASRLLAFCALSTPPRVDHAAAILA 95

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV---LMG 127
           +   PN YM  TM+R + ++  P +A + +  + R+ L  D  T  F +KA         
Sbjct: 96  RASAPNAYMLATMMRAFLRARLPSRASALFRRVIRESLPADARTLVFAIKAAASEHEHHS 155

Query: 128 LVEGTEIHGEVVKMGFLC-DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
              G  +H   +K G +   V V N L+  Y+    +  AR++F+    +D+VSW  ++ 
Sbjct: 156 PSGGEGVHCVALKWGHVAQSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVD 215

Query: 187 GFVECGEMGKAREVF--------------------DEMPQKDAISWSIMIDGYRK----- 221
           G+   G   +A  VF                      M Q   +++  M+  Y       
Sbjct: 216 GYARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVG 275

Query: 222 --------------KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
                         K G  +SAR +F+ M +KD+ SW +M++ YAK GDL +A +LF++M
Sbjct: 276 RSVNLENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDM 335

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK 327
           P RN  SWS MI  Y+Q   P+EA+ LF+ M+ +GV P    ++  +SACAQ+G LDLG+
Sbjct: 336 PRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGR 395

Query: 328 WIH---VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
           WI+   V   ++ +T+++    A ID+Y KCG  D A ++F  M ++NV+S+N MI    
Sbjct: 396 WIYDNYVISGKAVLTVNL--GNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHA 453

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444
           ++G  EE L+ F Q++   I  D++ FLG+L ACSHSGL +EG R F+ MK   GIEPK 
Sbjct: 454 VHGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKS 513

Query: 445 EHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE 504
           EHY+C++DLL + G LE+A  + + MPM+ + A WG LL ACR + NV + E   + LV+
Sbjct: 514 EHYACMIDLLGKIGLLEEAFEVAKGMPMETDEAGWGALLNACRMYGNVEIGEFAADKLVQ 573

Query: 505 LKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEI 564
           L   D G+YVL+S IYA    W+    +R +MR+R +KK  G S IE+DG   EF+  ++
Sbjct: 574 LNPLDSGIYVLMSQIYASKNKWDQVKILRVLMRERGVKKNPGCSSIEVDGKFHEFLVADV 633

Query: 565 FDVQSEELELVIQS 578
             V SE++   +++
Sbjct: 634 SHVHSEDIYAALKN 647


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/592 (35%), Positives = 333/592 (56%), Gaps = 48/592 (8%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           L +P + LL+   + T   QIL  +  N+L+ + F +S+LL      +  N++ A  LFN
Sbjct: 30  LNHPSLILLEKCNSRTQFKQILGHMMRNNLVGQTFPMSRLLFFSAVSHPENLELAILLFN 89

Query: 71  QIYQ-PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV 129
                PN Y+ NTMI G+  S+  +KA + Y +M + G   D  T+ ++L+    +    
Sbjct: 90  HFTPYPNLYIFNTMILGFPFSN--EKAFTIYRSMLQNGTYPDRQTFLYLLQTTKFV---A 144

Query: 130 EGTEIHGEVVKMGFLC-DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
           E  +IH   +  G L  + ++ N LI  Y   G   CAR +F+    +++VS+N ++ GF
Sbjct: 145 EVKQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGF 204

Query: 189 VECGEMGKAREVFDEMPQ---------------------------------------KDA 209
            + G +    E+F +M                                          + 
Sbjct: 205 AKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNL 264

Query: 210 ISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269
           I ++ ++D Y  K  ++  AR +F+    KD +SWN++I GYAK+G+L  A  LFN++P 
Sbjct: 265 ILYNALLDMY-VKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPT 323

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329
           R++ SW+ +I GYAQ+G+      LF  M  + V+PD ++++  ISA A++GALD G+WI
Sbjct: 324 RDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWI 383

Query: 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFG 389
           H    +    ++    +ALIDMY KCGS++ A  IF  + +K+V ++  MI G   +GFG
Sbjct: 384 HGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFG 443

Query: 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449
            +AL+ F+ M+ E  P +D+ F+ VL ACSHSGL  EG +IF SMK+   IEP +EHY C
Sbjct: 444 NKALELFSVMQAETKP-NDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGC 502

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509
           LVDLL R+G L  A+ ++E MPM+P+ ++WG +L ACR H+N+ LAE  +  L++L+ + 
Sbjct: 503 LVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEK 562

Query: 510 CGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
            G Y+LLSN+YA  G W ++  IR++M  R +KK  G S + +DG + +F +
Sbjct: 563 EGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVDGMVHDFTA 614


>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
 gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/558 (36%), Positives = 306/558 (54%), Gaps = 72/558 (12%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           L+N  V +LQ  K    +  I A +    L    F +++  M      T ++  A  LF 
Sbjct: 13  LENFFVPILQNCKNIVELKSIHAHVIKYSLSQSSFLVTK--MVDVCDKTEDLGYASLLFK 70

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKR-------KGLLVDNYTYPFVLKACG 123
           Q+ +PN Y++N MIR +T +     A+ FY  M R         +  D +T+PFV+K+C 
Sbjct: 71  QVKEPNGYLYNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCS 130

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            L+    G ++H  + K G   ++ + N LI MY+K                        
Sbjct: 131 GLVCYNLGKQVHAHLCKFGPKSNITMENALIDMYTK------------------------ 166

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243
                  C  +  A +VFD M ++DA                                IS
Sbjct: 167 -------CASLLDAHKVFDGMVERDA--------------------------------IS 187

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
           WNS+I G+  +G +  A  LF+ MP R + SW+ MI GY + G+  +ALY+FR+M   GV
Sbjct: 188 WNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGV 247

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
            PD IS++  + ACAQ+GAL++GKWIH++  R+ +     +  AL++MY KCG + +A +
Sbjct: 248 EPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQ 307

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           +F  M+K +VIS++ MI GL  +G   EA++ F +M+   I  + + FLG+L AC+H+G 
Sbjct: 308 LFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGF 367

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             EG   F SM +   IEP++EHY CLVD+L RAG L QAL+++E MPMKP+  +WG+LL
Sbjct: 368 WNEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLL 427

Query: 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
            +CR H N+ +A + +E L EL+ DD G YVLLSNIYAD   W+   R+RK+++ + +KK
Sbjct: 428 SSCRTHSNLDIAIIAMEHLEELEPDDTGNYVLLSNIYADLAKWDGVSRMRKLIKSKSMKK 487

Query: 544 ETGRSVIEIDGNIKEFVS 561
             G S+I+I+  ++EFVS
Sbjct: 488 TPGSSLIDINNVVQEFVS 505


>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
 gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/502 (37%), Positives = 304/502 (60%), Gaps = 5/502 (0%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N ++ GY     P+ A   Y  + + G L D +T+P VLK+C   +G+ EG ++HG ++K
Sbjct: 3   NALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVIIK 62

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
           MGF+C+++V N L+  YS C   G A  VF+   ++D+VSW  V+ G+V  G   +A  +
Sbjct: 63  MGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVGL 122

Query: 201 FDEMPQKDAISWSIMIDGYRKKKGDISSAR----ILFEHMPIKDLISWNSMIDGYAKIGD 256
           F  M  +   +  + +     +KG +S  +    + F+      L   N+++D Y K G 
Sbjct: 123 FLRMDVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGC 182

Query: 257 LVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISA 316
           L  A+Q+F+E+ E+++ SW+ +I G  Q   PKEAL LF++M   G+ PD I +   +SA
Sbjct: 183 LPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSA 242

Query: 317 CAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISY 376
           CA++GALD G+W+H  + R  I  D+ + TA++DMY KCG ++ + +IF  M  KNV+++
Sbjct: 243 CARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTW 302

Query: 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMK- 435
           N ++ GL M+G   + L+ F +M   G+  +++ FL +L AC H GL  EG + F  MK 
Sbjct: 303 NALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQYFNWMKG 362

Query: 436 RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLA 495
           +   + P+LEHY C+VDLL RA  L++AL + ++MPM P++ + G LL AC+ + N  L 
Sbjct: 363 QQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKENGNTELP 422

Query: 496 EVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGN 555
           + +++  VEL + D G+YVLLSNI+A    W+   RIR++M+++ IKK  G +VIE+DG 
Sbjct: 423 QEILDRFVELDSHDSGVYVLLSNIHAINQRWDDVTRIRRLMKEKGIKKPPGSTVIELDGK 482

Query: 556 IKEFVSGEIFDVQSEELELVIQ 577
             EF+ G+    Q + + L+++
Sbjct: 483 AHEFIVGDTRHPQDKRIRLLLK 504



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 104/210 (49%), Gaps = 7/210 (3%)

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           ++ ++ GYA    PK A  ++R ++  G  PD+ +    + +CA+   +  G+ +H  + 
Sbjct: 2   FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
           +     ++ V+ +L+  Y  C    +A R+F  M  ++V+S+  +I+G    G  +EA+ 
Sbjct: 62  KMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVG 121

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ-SMKRHCGIEPKLEHYSCLVDL 453
            F +M+ E    +   F+ VL+AC   G  + G  I   S K   G+   LE  + L+D+
Sbjct: 122 LFLRMDVE---PNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGV--GLEVSNALMDM 176

Query: 454 LSRAGELEQALNIVESMPMKPNLALWGTLL 483
             + G L  A  + + +  K ++  W +++
Sbjct: 177 YVKCGCLPGAKQVFDELAEK-DIVSWTSII 205



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 73/140 (52%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A+++F+++ + +     ++I G  Q + P++AL  + +M+  G+  D      VL AC  
Sbjct: 186 AKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACAR 245

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L  L  G  +H  + +     D+ +   ++ MY+KCG +  +  +F G   K++++WN +
Sbjct: 246 LGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNAL 305

Query: 185 LRGFVECGEMGKAREVFDEM 204
           L G    G   K  E+F+EM
Sbjct: 306 LNGLAMHGHAYKVLELFEEM 325


>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
          Length = 914

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/577 (35%), Positives = 325/577 (56%), Gaps = 54/577 (9%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           L SL +      H+ ++ AQ+    L   P   ++L+ +      L    + R+F+ I  
Sbjct: 355 LASLPRGLPRAAHVRELHAQVLKQGLHLNPRAAARLVSAYALLRLL--PSSRRVFDAIRD 412

Query: 75  P--NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
           P  + ++ NTM+R Y     P+ AL+ +  M R+    D++TY F++KA     G+    
Sbjct: 413 PHADAFLANTMLRAYALGGAPRDALAAFSAMPRR----DSFTYSFLIKALSA-AGVAPVR 467

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
            +H  VVK+G + D FV N LI  YSK G                         GF +  
Sbjct: 468 AVHSHVVKLGSVEDTFVGNALIDAYSKNG-------------------------GFSD-- 500

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA 252
               AR+VFDEMP++D +SW+  +     ++G+++ AR LF+ MP KD +SWN+++DGY 
Sbjct: 501 ----ARKVFDEMPERDVVSWNTAMAAM-VREGELAGARKLFDEMPEKDTVSWNTILDGYT 555

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ----------- 301
           K G++ AA +LF  MPERNV SWS M+ GY + G+ + A  +F +M  +           
Sbjct: 556 KAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPGKNLVTWTIMMKE 615

Query: 302 -GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
             V  DV +V+  ++ACA+ G+L LGK IH ++++  +     V  ALIDM+ KCG ++ 
Sbjct: 616 ASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNR 675

Query: 361 ARRIFYSMT-KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           A  +F + T +K+ +S+N +I G  M+G G++AL+ FAQM+ +G   D +  + VL AC+
Sbjct: 676 ADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACT 735

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           H G   EG R F +M+R  GI P++EHY C++DLL R G +++A+++++SMP +PN  +W
Sbjct: 736 HMGFVDEGRRYFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIW 795

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
           G+LL ACR H+NV  AE+ V  L +L+  + G Y +LSNIYA+AG W    + R  M+  
Sbjct: 796 GSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGT 855

Query: 540 KIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
             +K  G S +E++    EF  G+     S+++  ++
Sbjct: 856 GSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMV 892


>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/545 (37%), Positives = 315/545 (57%), Gaps = 14/545 (2%)

Query: 14  PLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERLFNQI 72
           P++S L+  ++   + Q+   +  + +I     LS+L+    T P T+N+  A  +F  I
Sbjct: 7   PILSQLENCRSMVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESI 66

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
             P+ Y+ N+MIRGY+ S NP KAL FY  M RKG   D +T+P+VLKAC  L  +  G+
Sbjct: 67  DCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGS 126

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
            +HG VVK GF  +++V   L+ MY  CG +     VFE     ++V+W  ++ GFV   
Sbjct: 127 CVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVVAWGSLISGFVNNN 186

Query: 193 EMGKAREVFDEMPQKDAI--SWSIMIDGYRKKKGDISSARILFEHMPIK---DLISWNSM 247
               A E F EM Q   +  + +IM+D        ++  R    +   K   ++I   S+
Sbjct: 187 RFSDAIEAFREM-QSIGVKPNETIMVDLL------VACGRCFDPYCQSKFEFNVILATSL 239

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           ID YAK GD+  A+ LF+ MPERN+ SW+ +I GY+Q+G+ +EA+ +F +ML  G+ PD 
Sbjct: 240 IDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDLGIAPDK 299

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           ++    I A    G   LG+ IH ++ ++    D  +  AL++MY K G+ + A+++F  
Sbjct: 300 VTFFSVIRASMIQGCSQLGQTIHAYVSKTGFVKDAAIVCALVNMYAKTGNAESAKKMFED 359

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKDDLIFLGVLIACSHSGLATE 426
           + KK+ I++ V+I GL  +G G +AL  F +M+ EG    D + +LGVL ACSH GL  E
Sbjct: 360 LEKKDTIAWTVVIIGLASHGHGNKALSIFQRMQEEGNATPDGITYLGVLYACSHIGLVEE 419

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G R F  M+   G+EP +EHY C+VD+LSRAG  E+A  +V++MP++P   +WG LL  C
Sbjct: 420 GQRYFAEMRDLYGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVQPTANIWGALLNGC 479

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
             H+N+ LA+ +   + E +    G+YVLLSNIYA AG W     IR+ M+ +++ K   
Sbjct: 480 EIHENLDLADRIRSMVSESEELGSGIYVLLSNIYAKAGRWADVKLIRESMKSKRVDKLLA 539

Query: 547 RSVIE 551
            S +E
Sbjct: 540 HSSVE 544


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/568 (37%), Positives = 321/568 (56%), Gaps = 11/568 (1%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           L+  L  SK+ T  LQ+ A +TT   +     L+  L +  +    +M  A+ +F+QI  
Sbjct: 28  LLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCG-HMPYAQHIFDQIVL 86

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
            N+++ N+MIRGY  +++P +AL  Y+ M   G   DN+TYPFVLKACG L+    G ++
Sbjct: 87  KNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKV 146

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           H  VV  G   DV+V N ++ MY K G +  AR VF+   ++DL SWN ++ GFV+ GE 
Sbjct: 147 HALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEA 206

Query: 195 GKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI----------LFEHMPIKDLISW 244
             A EVF +M +   +     +       GD+   ++            E   + +    
Sbjct: 207 RGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLM 266

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           NS+ID Y     +  A++LF  +  ++V SW+ +I GY + G+  +AL LF  M+  G  
Sbjct: 267 NSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAV 326

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           PD ++V+  ++AC Q+ AL LG  +  ++ +    ++++V TALI MY  CGSL  A R+
Sbjct: 327 PDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRV 386

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F  M +KN+ +  VM+ G G++G G EA+  F +M  +G+  D+ IF  VL ACSHSGL 
Sbjct: 387 FDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLV 446

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            EG  IF  M R   +EP+  HYSCLVDLL RAG L++A  ++E+M +KPN  +W  LL 
Sbjct: 447 DEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLS 506

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           ACR H+NV LA +  + L EL  D    YV LSNIYA    WE    +R ++ KR+++K 
Sbjct: 507 ACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKP 566

Query: 545 TGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
              S +E++  + +F  G+    QS+++
Sbjct: 567 PSYSFVELNKMVHQFFVGDTSHEQSDDI 594


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/548 (37%), Positives = 328/548 (59%), Gaps = 38/548 (6%)

Query: 27  HILQILAQLTTNDLIT-EPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ-PNTYMHNTMI 84
            + +I AQ+  + + + +P  ++   + ++S +  N+  +  +FN     PN + +N ++
Sbjct: 39  QLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHG-NLRHSVLIFNHFLSFPNIFAYNALL 97

Query: 85  RGYTQSSNPQKALSFYVN--MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMG 142
           + ++Q +     +S++ N  +       D YT+  VLKAC  L  ++EG ++H  V K G
Sbjct: 98  KAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYG 157

Query: 143 FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFD 202
              ++FV N L+ +Y K   +GC                N +            A+++FD
Sbjct: 158 CESNLFVRNSLVDLYFK---VGC----------------NCI------------AQKLFD 186

Query: 203 EMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQ 262
           EM  +D +SW+ +I GY    G +  AR++F+ M  K+L+SW++MI GYA++G+L  A+Q
Sbjct: 187 EMVVRDVVSWNTLISGY-CFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQ 245

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVG 321
           LF  MP RNV SW+ MI GYAQ+    +A+ LFR+M  +G + P+ ++++  +SACA +G
Sbjct: 246 LFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLG 305

Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
           ALDLGKWIH F++R++I + + +  AL DMY KCG + EA+ +F+ M +++VIS++++I 
Sbjct: 306 ALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIM 365

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
           GL M G+  EA   FA+M  +G+  +D+ F+G+L AC+H+GL  +G   F  M +  GI 
Sbjct: 366 GLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGIT 425

Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEG 501
           PK+EHY C+VDLLSRAG L+QA +++ SMPM+PN+ +WG LL  CR +++    E VV  
Sbjct: 426 PKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWR 485

Query: 502 LVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
           ++EL ++  G  V L+N+YA  G  + A   R  MR  K  K  G S IEI+ ++ EF  
Sbjct: 486 ILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFM 545

Query: 562 GEIFDVQS 569
           G+    QS
Sbjct: 546 GDSSHPQS 553


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/529 (37%), Positives = 312/529 (58%), Gaps = 8/529 (1%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A  +F Q   PN +++NT+IRG   +   + A+S Y +M++ G   DN+T+PFVLKAC  
Sbjct: 54  ATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTR 113

Query: 125 LMGLVE-GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
           L      G  +H  V+K GF  DVFV  GL+ +YSK G +  AR VF+    K++VSW  
Sbjct: 114 LPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTA 173

Query: 184 VLRGFVECGEMGKAREVFD---EMPQKDAISWSIMIDGYRKKKGDISSARILFEHM---- 236
           ++ G++E G  G+A  +F    EM  +      + I     + GD++S R +  +M    
Sbjct: 174 IICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESG 233

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
            + ++    S++D YAK G +  A+++F+ M E++V  WS +I GYA +G PKEAL +F 
Sbjct: 234 SVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFF 293

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
           EM  + VRPD  +++G  SAC+++GAL+LG W    M       + ++ TALID Y KCG
Sbjct: 294 EMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCG 353

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
           S+ +A+ +F  M +K+ + +N +I+GL M G    A   F QM   G+  D   F+G+L 
Sbjct: 354 SVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLC 413

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
            C+H+GL  +G+R F  M     + P +EHY C+VDL +RAG L +A +++ SMPM+ N 
Sbjct: 414 GCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANS 473

Query: 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
            +WG LL  CR H++  LAE V++ L+EL+  + G YVLLSNIY+ +  W+ A +IR  +
Sbjct: 474 IVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSL 533

Query: 537 RKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
            ++ ++K  G S +E+DG + EF+ G+     S ++   ++S  K   E
Sbjct: 534 NQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLESLFKDLRE 582



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 175/362 (48%), Gaps = 13/362 (3%)

Query: 51  LMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV 110
           L+ L S N    D A ++F++I + N      +I GY +S    +AL  +  +   GL  
Sbjct: 143 LVCLYSKNGFLTD-ARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRP 201

Query: 111 DNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF 170
           D++T   +L AC  +  L  G  I G + + G + +VFV   L+ MY+KCG M  AR VF
Sbjct: 202 DSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVF 261

Query: 171 EGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS-- 228
           +G   KD+V W+ +++G+   G   +A +VF EM +++       + G       + +  
Sbjct: 262 DGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALE 321

Query: 229 ----ARILFEHMP-IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
               AR L +    + + +   ++ID YAK G +  A+++F  M  ++   ++ +I G A
Sbjct: 322 LGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLA 381

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDM 342
             G+   A  +F +M+  G++PD  + +G +  C   G +D G ++         +T  +
Sbjct: 382 MCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTI 441

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG---FGEEALKCFAQ 398
                ++D+  + G L EA+ +  SM  + N I +  ++ G  ++      E  LK   +
Sbjct: 442 EHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIE 501

Query: 399 ME 400
           +E
Sbjct: 502 LE 503


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/561 (36%), Positives = 321/561 (57%), Gaps = 37/561 (6%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
           +SLL   K    + QI        + T+ +   +L++      +  +  A RL     +P
Sbjct: 1   LSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEP 60

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV-DNYTYPFVLKACGVLMGLVEGTEI 134
           + +M NT++RGY++S  P  +++ +V M RKG +  D++++ FV+KA      L  G ++
Sbjct: 61  DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 120

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           H + +K G    +FV   LIGMY  CG                             C E 
Sbjct: 121 HCQALKHGLESHLFVGTTLIGMYGGCG-----------------------------CVEF 151

Query: 195 GKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKI 254
             AR+VFDEM Q + ++W+ +I    +   D++ AR +F+ M +++  SWN M+ GY K 
Sbjct: 152 --ARKVFDEMHQPNLVAWNAVITACFRGN-DVAGAREIFDKMLVRNHTSWNVMLAGYIKA 208

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
           G+L +A+++F+EMP R+  SWS MI G A +G+  E+   FRE+   G+ P+ +S+ G +
Sbjct: 209 GELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVL 268

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN-V 373
           SAC+Q G+ + GK +H F++++  +  + V  ALIDMY +CG++  AR +F  M +K  +
Sbjct: 269 SACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCI 328

Query: 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433
           +S+  MIAGL M+G GEEA++ F +M   G+  D + F+ +L ACSH+GL  EG   F  
Sbjct: 329 VSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSE 388

Query: 434 MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT 493
           MKR   IEP++EHY C+VDL  R+G+L++A + +  MP+ P   +W TLL AC +H N+ 
Sbjct: 389 MKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIE 448

Query: 494 LAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEID 553
           LAE V + L EL  ++ G  VLLSN YA AG W+    IRK M  ++IKK T  S++E+ 
Sbjct: 449 LAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVG 508

Query: 554 GNIKEFVSGEI---FDVQSEE 571
             + +F +GE     D+++ E
Sbjct: 509 KTMYKFTAGEKKKGIDIEAHE 529


>gi|354805230|gb|AER41645.1| CRR4 [Oryza punctata]
          Length = 632

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/511 (36%), Positives = 293/511 (57%), Gaps = 40/511 (7%)

Query: 100 YVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE-IHGEVVKMGFLCDVFVVNGLIGMYS 158
           YV M+ +G+  + +T+ F+L+AC  L+GL      +HG++V+ GF  DVFV N L+ +Y 
Sbjct: 98  YVAMRAQGVPPNGFTFTFLLRACA-LLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYY 156

Query: 159 KC------------------------------------GHMGCARSVFEGSEIKDLVSWN 182
           +C                                    G    A  +FE    +++VSWN
Sbjct: 157 RCGGGGAGGVGAARQVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWN 216

Query: 183 LVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLI 242
            V+ GF   G+M  AR VFD MP ++A+SW++MI GY    GD+ +AR +F+ M  KD++
Sbjct: 217 TVVAGFARTGDMVTARTVFDRMPSRNAVSWNLMISGY-ATSGDVEAARSVFDRMDQKDVV 275

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
           SW +M+  YAKIGDL  A++LF+ MP +N+ SW+ MI GY  +    EAL  F+ M+ +G
Sbjct: 276 SWTAMVSAYAKIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEG 335

Query: 303 -VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
             RPD  +++  +SACAQ+G+++   WI  F+ +S   + + +  ALIDM+ KCG +  A
Sbjct: 336 RFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNTHLTVALGNALIDMFAKCGDVGRA 395

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
           + IFY M  + +I++  MI+G   NG   EAL  +  M  EG+  D  +F+  L AC+H 
Sbjct: 396 QSIFYKMETRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAALAACTHG 455

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           GL  EG+ IF  M     I+P++EHY C+VDLL RAG L++A+  +ESMP++P++ +W T
Sbjct: 456 GLLQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAILFIESMPLEPSVVIWVT 515

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           LL +C  H N  L E V + + EL+  +    VL+SN  A  G W+  +  R  MR   I
Sbjct: 516 LLSSCVAHGNAELIEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIGARTSMRNWGI 575

Query: 542 KKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           +K  G S+I++   + EF++ +    + +E+
Sbjct: 576 EKVPGSSLIQVGSEVHEFLAKDTRHERRKEI 606


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/561 (36%), Positives = 321/561 (57%), Gaps = 37/561 (6%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
           +SLL   K    + QI        + T+ +   +L++      +  +  A RL     +P
Sbjct: 9   LSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEP 68

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV-DNYTYPFVLKACGVLMGLVEGTEI 134
           + +M NT++RGY++S  P  +++ +V M RKG +  D++++ FV+KA      L  G ++
Sbjct: 69  DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 128

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           H + +K G    +FV   LIGMY  CG                             C E 
Sbjct: 129 HCQALKHGLESHLFVGTTLIGMYGGCG-----------------------------CVEF 159

Query: 195 GKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKI 254
             AR+VFDEM Q + ++W+ +I    +   D++ AR +F+ M +++  SWN M+ GY K 
Sbjct: 160 --ARKVFDEMHQPNLVAWNAVITACFRGN-DVAGAREIFDKMLVRNHTSWNVMLAGYIKA 216

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
           G+L +A+++F+EMP R+  SWS MI G A +G+  E+   FRE+   G+ P+ +S+ G +
Sbjct: 217 GELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVL 276

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN-V 373
           SAC+Q G+ + GK +H F++++  +  + V  ALIDMY +CG++  AR +F  M +K  +
Sbjct: 277 SACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCI 336

Query: 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433
           +S+  MIAGL M+G GEEA++ F +M   G+  D + F+ +L ACSH+GL  EG   F  
Sbjct: 337 VSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSE 396

Query: 434 MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT 493
           MKR   IEP++EHY C+VDL  R+G+L++A + +  MP+ P   +W TLL AC +H N+ 
Sbjct: 397 MKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIE 456

Query: 494 LAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEID 553
           LAE V + L EL  ++ G  VLLSN YA AG W+    IRK M  ++IKK T  S++E+ 
Sbjct: 457 LAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVG 516

Query: 554 GNIKEFVSGEI---FDVQSEE 571
             + +F +GE     D+++ E
Sbjct: 517 KTMYKFTAGEKKKGIDIEAHE 537


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/608 (35%), Positives = 329/608 (54%), Gaps = 78/608 (12%)

Query: 10  SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLF 69
           +L +   SLLQ   +   + QI AQL TN  I +P +    +  L      +   A   F
Sbjct: 30  ALSDKFNSLLQQCLSIKQLKQIHAQLLTNS-IHKPNSFLYKIADLK-----DFAYASVFF 83

Query: 70  NQIYQPNTYMHNTMIRGYTQSSNPQK-ALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           + I  P  Y  N MIRG + + N    AL FY  MK  GL  +N TYPF+  AC  L+ +
Sbjct: 84  SNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAV 143

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
             G   H  V++ G   D  V + LI MY++CG                           
Sbjct: 144 ENGRMGHCSVIRRGLDEDGHVSHSLITMYARCG--------------------------- 176

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK------------------------- 223
               +MG AR+VFDE+ QKD +SW+ MI GY K +                         
Sbjct: 177 ----KMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLV 232

Query: 224 ------GDISSARI--LFEHMPIKDLISWN-----SMIDGYAKIGDLVAAQQLFNEMPER 270
                 G++   ++    E   +++ ++ N     ++I  Y K GDLV+A+++F+ M ++
Sbjct: 233 SVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKK 292

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           +  +W+ MI GYAQ+G  +EA+ LF++M      PD I+++G +SACA +GALDLGK + 
Sbjct: 293 DKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVE 352

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
           ++        D+ V TAL+DMY KCGSLD A R+FY M KKN +S+N MI+ L  +G  +
Sbjct: 353 IYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQ 412

Query: 391 EALKCFAQMETEG--IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
           EAL  F  M  EG  +  +D+ F+GVL AC H+GL  EG R+F  M    G+ PK+EHYS
Sbjct: 413 EALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYS 472

Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508
           C+VDL SRAG LE+A + V +MP KP+  + G LL AC+  +N+ ++E V++ L+EL+  
Sbjct: 473 CMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPS 532

Query: 509 DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQ 568
           + G YV+ S +YA+   W+ + R+R +M+++ + K  G S I+I+  + EF +G++   +
Sbjct: 533 NSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQLHEFHAGDVLHQE 592

Query: 569 SEELELVI 576
             E+  ++
Sbjct: 593 WIEIHQIL 600


>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 697

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/569 (34%), Positives = 328/569 (57%), Gaps = 36/569 (6%)

Query: 10  SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLF 69
           S K  L++ ++   T   +  + A +   + I + F + Q + +  + N+++       F
Sbjct: 134 SFKQTLLNRIKNCSTINELHGLCASMIKTNAIQDCFLVHQFISASFALNSVHYPVFA--F 191

Query: 70  NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM-KRKGLLVDNYTYPFVLKACGVLMGL 128
            Q+  PN +++N MI+G+     P +AL  YV+M +   +L  +YT+  ++KAC  +  +
Sbjct: 192 TQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAV 251

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
             G  +H  + K GF   +FV   L+  YSK              EI             
Sbjct: 252 ELGQMVHCHIWKKGFESHLFVQTALVDFYSKL-------------EI------------- 285

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMI 248
                + +AR+VFDEM ++DA +W+ M+     + GD+ SAR LFE MP ++  +WN+MI
Sbjct: 286 -----LSEARKVFDEMCERDAFAWTAMVSAL-ARVGDMDSARKLFEEMPERNTATWNTMI 339

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
           DGYA++G++ +A+ LFN+MP +++ SW+ MI  Y+Q+   ++AL ++ EM   G+ PD +
Sbjct: 340 DGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEV 399

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           ++    SACA +GAL+LGK IH ++    + +D+ + +AL+DMY KCGSLD +  IF+ +
Sbjct: 400 TMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKL 459

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
           T KN+  +N +I GL ++G+ E+AL+ FA ME E I  + + F+ +L AC+H+GL  EG 
Sbjct: 460 TDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGR 519

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
             F SM R   I P + HY C+VD+LS++G L +AL +++SM  +PN  +WG LL  C+ 
Sbjct: 520 SRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKL 579

Query: 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI-KKETGR 547
           H N  +AE  VE L+ L+  + G Y LL ++YA+   W     IR MM+++ + KK  G 
Sbjct: 580 HGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGS 639

Query: 548 SVIEIDGNIKEFVSGEIFDVQSEELELVI 576
           S IE++G I +F +       S+++  V+
Sbjct: 640 SWIELEGTIHQFSASADSHPDSDKIYFVL 668


>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
 gi|194706828|gb|ACF87498.1| unknown [Zea mays]
          Length = 570

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/551 (35%), Positives = 311/551 (56%), Gaps = 41/551 (7%)

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           +F+ I  P+  M+NT+ R Y  S  P++AL  +  M R+G+L + +T PFV+KAC     
Sbjct: 1   MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
                 +HG  +K+GF+  VFV N L+  Y+  G +G +R  F+    +++VSWN ++ G
Sbjct: 61  WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGG 120

Query: 188 FVECGEMGKAREVFDEMPQK---------------------------------------D 208
           + + G+  +A  +F EM ++                                       D
Sbjct: 121 YAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVD 180

Query: 209 AISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
            I    ++D Y  K GD+  AR  FE MPIK ++SW SM+    K G + AA+  F+ MP
Sbjct: 181 LILGGALVDMY-SKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMP 239

Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328
           ERN  SW+ MI  Y Q G   EAL L+++M   G  PD  +++  +SAC ++G L +GK 
Sbjct: 240 ERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKM 299

Query: 329 IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
           +H++++ +    D+ +  +L+DMY KCG +D A R+F  M  +NV+S+NV+I GL M+G 
Sbjct: 300 VHLYIRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGR 359

Query: 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
             +A+  F  M     P D + F+ +L +CSH GL   G   F+SM+    ++ ++EHY+
Sbjct: 360 ALDAITFFRSMVRNTSP-DGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKHEVEHYA 418

Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508
           C+VDLL R G LE+A+ +++ MPMKP++ +WG LL ACR H NV + + V++ L+EL+  
Sbjct: 419 CMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGKQVIKQLLELEGI 478

Query: 509 DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQ 568
             GL+VL+SN+  +   WE   R+RK+M++R  +K+ G S IEI+ +I EF   +I    
Sbjct: 479 SGGLFVLISNLLYETNQWEDMKRLRKLMKERGTRKDMGVSSIEINNSIHEFGVEDIRHES 538

Query: 569 SEELELVIQSF 579
           S E+  V+   
Sbjct: 539 SSEIYAVVDQL 549



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/422 (27%), Positives = 202/422 (47%), Gaps = 52/422 (12%)

Query: 40  LITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSF 99
            + + F  + LL S  S  +L    + R F+++   N    N+MI GY Q+ + ++A + 
Sbjct: 76  FVGQVFVANALLHSYASAGSLG--DSRRFFDEMAGRNVVSWNSMIGGYAQAGDTREACAL 133

Query: 100 YVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSK 159
           +  M+R+G L D +T   +L AC     L  G  +H  ++  G   D+ +   L+ MYSK
Sbjct: 134 FGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSK 193

Query: 160 CGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY 219
           CG +  AR  FE   IK +VSW  +L    + G +  AR  FD MP+++ +SW+ MI  Y
Sbjct: 194 CGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCY 253

Query: 220 RKKK----------------------------------GDISSARILFEHMPIKDLIS-- 243
            ++                                   GD++  +++  H+ I+D I   
Sbjct: 254 VQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMV--HLYIRDNIHNP 311

Query: 244 ----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
                NS++D YAK G +  A +LF EM  RNV SW+++I G A HG   +A+  FR M+
Sbjct: 312 DISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGRALDAITFFRSMV 371

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR-SRITMDMIVQTALIDMYMKCGSL 358
            +   PD I+ +  +S+C+  G L+ G+     M+    +  ++     ++D+  + G L
Sbjct: 372 -RNTSPDGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRGHL 430

Query: 359 DEARRIFYSMT-KKNVISYNVMIAGLGMNG---FGEEALKCFAQMETEGIPKDDLIFLGV 414
           ++A  +   M  K +V+ +  ++    ++G    G++ +K    +E EGI     + +  
Sbjct: 431 EKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGKQVIK--QLLELEGISGGLFVLISN 488

Query: 415 LI 416
           L+
Sbjct: 489 LL 490


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/593 (36%), Positives = 325/593 (54%), Gaps = 46/593 (7%)

Query: 11  LKNP----LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAE 66
           LK+P    L  LL    +   +  + AQ+  + L  +  TL +LL        L    A 
Sbjct: 34  LKSPTHQTLHHLLDQCSSMKRLKLVHAQIILHGLAAQVVTLGKLLSLCVQEGDLRY--AH 91

Query: 67  RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
            LF+QI QPN +M+N +IRGY+ S++P K+L  +  M   G + + +T+PFVLKAC    
Sbjct: 92  LLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKP 151

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
              E   +H + +K+G      V N ++  Y  C  +  AR VF+    + +VSWN ++ 
Sbjct: 152 FYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIA 211

Query: 187 GFVECGEMGKAREVFDEMPQK--------------------------------------- 207
           G+ + G   +A  +F EM Q                                        
Sbjct: 212 GYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEI 271

Query: 208 DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
           D+I  + +ID Y  K G +  A+ +F+ M  KD++SW SM++ YA  G +  A Q+FN M
Sbjct: 272 DSIVTNALIDMY-AKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHM 330

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK 327
           P +NV SW+ +I    Q G   EA+ LF  M   GV PD  +++  +S C+  G L LGK
Sbjct: 331 PVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGK 390

Query: 328 WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
             H ++  + IT+ + +  +LIDMY KCG+L  A  IF+ M +KNV+S+NV+I  L ++G
Sbjct: 391 QAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHG 450

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
           FGEEA++ F  M+  G+  D++ F G+L ACSHSGL   G   F  M     I P +EHY
Sbjct: 451 FGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHY 510

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
           +C+VDLL R G L +A+ +++ MP+KP++ +WG LL ACR + N+ +A+ +++ L+EL  
Sbjct: 511 ACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLELGR 570

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
            + GLYVLLSN+Y+++  W+   +IRK+M    IKK    S IEIDG   +F+
Sbjct: 571 FNSGLYVLLSNMYSESQRWDDMKKIRKIMDDSGIKKCRAISFIEIDGCCYQFM 623


>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Glycine max]
          Length = 529

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/533 (34%), Positives = 313/533 (58%), Gaps = 35/533 (6%)

Query: 45  FTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMK 104
           F ++Q + + ++ + +N+  A   F  +  PN  + N +IRG       ++AL  Y++M 
Sbjct: 11  FLVNQFISACSNLSCINL--AASAFANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHML 68

Query: 105 RKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG 164
           R  ++  +Y++  ++KAC +L+    G  +HG V K GF   VFV   LI  YS  G   
Sbjct: 69  RNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFG--- 125

Query: 165 CARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKG 224
                                       ++G +R VFD+MP++D  +W+ MI  +  + G
Sbjct: 126 ----------------------------DVGGSRRVFDDMPERDVFAWTTMISAH-VRDG 156

Query: 225 DISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQ 284
           D++SA  LF+ MP K++ +WN+MIDGY K+G+  +A+ LFN+MP R++ SW+ M++ Y++
Sbjct: 157 DMASAGRLFDEMPEKNVATWNAMIDGYGKLGNAESAEFLFNQMPARDIISWTTMMNCYSR 216

Query: 285 HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIV 344
           +   KE + LF +++ +G+ PD +++   ISACA +GAL LGK +H+++      +D+ +
Sbjct: 217 NKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYI 276

Query: 345 QTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGI 404
            ++LIDMY KCGS+D A  +FY +  KN+  +N +I GL  +G+ EEAL+ F +ME + I
Sbjct: 277 GSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRI 336

Query: 405 PKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL 464
             + + F+ +L AC+H+G   EG R F SM +   I P++EHY C+VDLLS+AG LE AL
Sbjct: 337 RPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDAL 396

Query: 465 NIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524
            ++ +M ++PN  +WG LL  C+ H+N+ +A + V+ L+ L+  + G Y LL N+YA+  
Sbjct: 397 EMIRNMTVEPNSFIWGALLNGCKLHKNLEIAHIAVQNLMVLEPSNSGHYSLLVNMYAEEN 456

Query: 525 MWEHALRIRKMMRKRKIKKET-GRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
            W    +IR  M+   ++K   G S +EI+  +  F + + +     +L L++
Sbjct: 457 RWNEVAKIRTTMKDLGVEKRCPGSSWVEINKTVHLFAASDTYHPSYSQLHLLL 509



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 89/401 (22%), Positives = 144/401 (35%), Gaps = 110/401 (27%)

Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
           +D    N  I   + +  +  A   F  +   NV  ++ +I G       ++AL  +  M
Sbjct: 8   QDCFLVNQFISACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHM 67

Query: 299 LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
           L   V P   S    I AC  +     G+ +H  + +      + VQT LI+ Y   G +
Sbjct: 68  LRNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDV 127

Query: 359 DEARRIFYS-------------------------------MTKKNVISYNVMIAGLGMNG 387
             +RR+F                                 M +KNV ++N MI G G  G
Sbjct: 128 GGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNVATWNAMIDGYGKLG 187

Query: 388 FGEEALKCFAQMET-------------------------------EGIPKDDLIFLGVLI 416
             E A   F QM                                 +G+  D++    V+ 
Sbjct: 188 NAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVIS 247

Query: 417 ACSHSGLATEG-----YRIFQ-------------SMKRHCG-------IEPKLEH----- 446
           AC+H G    G     Y + Q              M   CG       +  KL+      
Sbjct: 248 ACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFC 307

Query: 447 YSCLVDLLSRAGELEQALNI---VESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEG-- 501
           ++C++D L+  G +E+AL +   +E   ++PN   + ++L AC      T A  + EG  
Sbjct: 308 WNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISILTAC------THAGFIEEGRR 361

Query: 502 -LVELKADDC-----GLYVLLSNIYADAGMWEHALR-IRKM 535
             + +  D C       Y  + ++ + AG+ E AL  IR M
Sbjct: 362 WFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNM 402


>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
          Length = 514

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/528 (36%), Positives = 308/528 (58%), Gaps = 42/528 (7%)

Query: 35  LTTNDLITEPFTLSQLL--MSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSN 92
           +  N L++    + +L+   SL+ P  L    A +LF++I +P+  + N ++RG  QS  
Sbjct: 1   MVVNGLMSNLSVVGELIYSASLSVPGALKY--AHKLFDEIPKPDVSICNHVLRGSAQSMK 58

Query: 93  PQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNG 152
           P+K +S Y  M+++G+  D YT+ FVLKAC  L     G   HG+VV+ GF+ + +V N 
Sbjct: 59  PEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNA 118

Query: 153 LIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISW 212
           LI  ++ CG                               ++G A E+FD+  +   ++W
Sbjct: 119 LILFHANCG-------------------------------DLGIASELFDDSAKAHKVAW 147

Query: 213 SIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
           S M  GY  K+G I  A  LF+ MP KD ++WN MI G  K  ++ +A++LF+   E++V
Sbjct: 148 SSMTSGY-AKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDV 206

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
            +W+ MI GY   G PKEAL +F+EM   G  PDV++++  +SACA +G L+ GK +H++
Sbjct: 207 VTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIY 266

Query: 333 MKR-----SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
           +       S I +   +  ALIDMY KCGS+D A  +F  +  +++ ++N +I GL ++ 
Sbjct: 267 ILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH- 325

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
             E +++ F +M+   +  +++ F+GV++ACSHSG   EG + F  M+    IEP ++HY
Sbjct: 326 HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHY 385

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
            C+VD+L RAG+LE+A   VESM ++PN  +W TLL AC+ + NV L +   E L+ ++ 
Sbjct: 386 GCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRK 445

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGN 555
           D+ G YVLLSNIYA  G W+   ++RKM    ++KK TG S+IE D +
Sbjct: 446 DESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIEEDDD 493


>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/564 (36%), Positives = 314/564 (55%), Gaps = 57/564 (10%)

Query: 3   TLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNM 62
           TL   ++   +P +SL+     T  + QI AQ+    L  +PF+ S+L+ +       ++
Sbjct: 26  TLNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSL 85

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGL-LVDNYTYPFVLKA 121
           D A+++F+QI  PN Y  NT+IR Y  SSNP ++L  ++ M  +     D +T+PF++KA
Sbjct: 86  DYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKA 145

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
              L  L  G   HG V+K+    DVF++N LI  Y+KCG +G    VF     +D+VSW
Sbjct: 146 ASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSW 205

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWS-IMIDGYRKKKGDISSARILFEHMPIKD 240
           N ++  FV+ G   +A E+F EM  +++++ S  M+D Y  K G +  A+ LF+ MP KD
Sbjct: 206 NSMITAFVQGGCPEEALELFQEMETQNSLTLSNAMLDMY-TKCGSVEDAKRLFDKMPEKD 264

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM-L 299
           ++SW +M+ GYAKIG+  AAQ +F+ MP +++ +W+ +I  Y Q G PKEAL LF E+ L
Sbjct: 265 IVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQL 324

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
            +  +PD +++                        +  + ++  + T+LIDMY KCG L 
Sbjct: 325 SKTAKPDEVTL------------------------KQGMKLNCHLTTSLIDMYCKCGDLQ 360

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           +A  +F+S+ +K+V  ++ MIAGL M+G G++A+  F++M+ + +  + + F  +L ACS
Sbjct: 361 KALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACS 420

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           H GL  EG   F  M+   G                              MPM P  ++W
Sbjct: 421 HVGLVEEGRTFFNQMELVYG-----------------------------KMPMAPAASVW 451

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
           G LL AC  H+NV LAE     L+EL+  + G YVLLSNIYA AG W+    +RK+MR  
Sbjct: 452 GALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDV 511

Query: 540 KIKKETGRSVIEIDGNIKEFVSGE 563
            +KKE G S IE+DG + EF+ G+
Sbjct: 512 GLKKEPGCSSIEVDGIVHEFLVGD 535


>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 552

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/550 (36%), Positives = 319/550 (58%), Gaps = 43/550 (7%)

Query: 43  EPFTLSQLLMSLT-SPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYV 101
           +P ++S+++     SP +L   +A  +FNQI +P   + N MI G ++S  P  A+ FY 
Sbjct: 4   DPSSISEVIKHYALSPQSL--PKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYN 61

Query: 102 NMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCG 161
            M  KG+   + T+ F+ K+C  +  + +G  +    +K+GF    FV N LI MY   G
Sbjct: 62  TMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFG 121

Query: 162 HMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAIS------ 211
            +  A+ VF+G   +D+VSWN ++ G+ +     K  ++F EM     + D+++      
Sbjct: 122 ELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAIS 181

Query: 212 -------WSI----------------------MIDGYRKKKGDISSARILFEHMPIKDLI 242
                  W +                      +ID Y  ++G I  A  +F  M  K+++
Sbjct: 182 ATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMY-GRRGMIDFAGRVFYQMKEKNIV 240

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
           SWN+MI GYAK+G+LVAA++LFNEMP R+V SW+ MI GY+      EA+ LF+EM+   
Sbjct: 241 SWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSM 300

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           V+PD I+V  A+SACA +G+LD G+ +H ++++  I  D+ V  +LIDMY KCG +++A 
Sbjct: 301 VKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKAL 360

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
           ++F  M  ++ +S+  +I+GL +NGF E AL  F QM  EGI      F+GVL+AC+H G
Sbjct: 361 QVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVG 420

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
           L  +G   F+SM+    + P+++HY C+VDLL R+G L+ A N ++ MP+ P++ +W  L
Sbjct: 421 LVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRIL 480

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
           L AC+ H N+ LAE+V + L+ L   + G YVL S+ YA +  W+  ++IRK+M    ++
Sbjct: 481 LSACKLHGNLVLAEIVSKKLLVLDPSNNGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQ 540

Query: 543 KETGRSVIEI 552
           K    S IE+
Sbjct: 541 KPCAYSSIEV 550


>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g15300-like [Glycine max]
          Length = 555

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/528 (37%), Positives = 305/528 (57%), Gaps = 38/528 (7%)

Query: 27  HILQILAQLTTNDLITEPFTLSQLLMSLTSP--NTLNMDQAERLFNQIYQPNTYMHNTMI 84
           H L I+   T+N        L+   MS+  P   T     A ++F QI QP+T+M NT I
Sbjct: 21  HALMIVNGFTSNVGFLRKLVLTTA-MSMVGPAATTAVTQYAVQMFAQIPQPDTFMWNTYI 79

Query: 85  RGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFL 144
           RG +QS +P  A++ Y  M  + +  DN+T+P VLKAC  L  +  G+ +HG V ++GF 
Sbjct: 80  RGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKACTKLFWVNTGSVVHGRVFRLGFG 139

Query: 145 CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM 204
            +V V N L+  ++KCG                               ++  A ++FD+ 
Sbjct: 140 SNVVVRNTLLVFHAKCG-------------------------------DLKVANDIFDDS 168

Query: 205 PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
            + D ++WS +I GY  ++GD+S AR LF+ MP +DL+SWN MI  Y K G++  A++LF
Sbjct: 169 DKGDVVAWSALIAGY-AQRGDLSVARKLFDEMPKRDLVSWNVMITAYTKHGEMECARRLF 227

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
           +E P ++V SW+ M+ GY  H   +EAL LF EM   G  PD ++++  +SACA +G  D
Sbjct: 228 DEAPMKDVVSWNAMVGGYVLHNLNQEALELFDEMCEVGECPDEVTMLSLLSACADLG--D 285

Query: 325 LGKWIHV-FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383
            G+ +H   M+ ++  +  ++  AL+DMY KCG++ +   +F+ +  K+++S+N +I GL
Sbjct: 286 XGEKVHAKIMELNKGKLSTLLGNALVDMYAKCGNIGKGVCVFWLIRDKDMVSWNSVIGGL 345

Query: 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443
             +G  EE+L  F +M+   +  D++ F+GVL ACSH+G   EG R F  MK    IEP 
Sbjct: 346 AFHGHAEESLGLFREMQRTKVCPDEITFVGVLAACSHTGNVDEGNRYFYLMKNKYKIEPN 405

Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLV 503
           + H  C+VD+L+RAG L++A + + SM ++PN  +W +LL AC+ H +V LA+   E L+
Sbjct: 406 IRHCGCVVDMLARAGLLKEAFDFIASMKIEPNAIVWRSLLGACKVHGDVELAKRATEQLL 465

Query: 504 ELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
            ++ D  G YVLLSN+YA  G W+ A  +RK+M    + K  G S +E
Sbjct: 466 RMRVDQSGDYVLLSNVYASHGEWDGAENVRKLMDDNGVTKTRGSSFVE 513


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/573 (36%), Positives = 315/573 (54%), Gaps = 72/573 (12%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
           + L Q   +  H+  + A L    L  + + L+++L    S N  N + + R+F+Q  +P
Sbjct: 14  IRLFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLR--FSFNFGNTNYSHRIFHQTKEP 71

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           N ++ NTMI G   + + Q+++  Y +M+++GL  D++T+PF+LKAC  L+    G ++H
Sbjct: 72  NIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLH 131

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
           G VVK G   D FV   L+ +Y K                               CG + 
Sbjct: 132 GLVVKAGCESDAFVNTSLVSLYGK-------------------------------CGFID 160

Query: 196 KAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIG 255
            A +VFD++P+                                K++ +W ++I GY  +G
Sbjct: 161 NAFKVFDDIPE--------------------------------KNVAAWTAIISGYIGVG 188

Query: 256 D-------LVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
                      A  +F+ M E+++ SWS MI GYA +G PKEAL LF +ML +G RPD  
Sbjct: 189 KCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCY 248

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           +++G + ACA++GAL+LG W    M R+    + ++ TALIDMY KCG +D A  +F  M
Sbjct: 249 AMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGM 308

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
            KK+++ +N  I+GL M+G  + A   F QME  GI  D   F+G+L AC+H+GL  EG 
Sbjct: 309 RKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGR 368

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
           + F SM+R   + P++EHY C+VDLL RAG L++A  +V+SMPM+ N  +WG LL  CR 
Sbjct: 369 QYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRL 428

Query: 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRS 548
           H++  L E V++ L+ L+  + G YVLLSNIY+ +  WE A +IR +M +R IKK  G S
Sbjct: 429 HRDTQLVEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYS 488

Query: 549 VIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
            IE+DG + EF+ G+     SE++   +   VK
Sbjct: 489 WIEVDGVVHEFLVGDTSHPLSEKIYAKLGELVK 521


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/599 (33%), Positives = 325/599 (54%), Gaps = 41/599 (6%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           N ++  L   K+  HI Q+ A +    +I      S L     S +++N+  A  +F+ I
Sbjct: 13  NTILEKLSFCKSLNHIKQLHAHILRT-VINHKLN-SFLFNLSVSSSSINLSYALNVFSSI 70

Query: 73  -YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
              P + + N  +R  ++SS P+  + FY  ++  G  +D +++  +LKA   +  L EG
Sbjct: 71  PSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEG 130

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            E+HG   K+  LCD FV  G + MY+ CG +  AR+VF+    +D+V+WN ++  +   
Sbjct: 131 MELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRF 190

Query: 192 GEMGKAREVFDEMPQKDA------------------------------ISWSIMIDGY-- 219
           G + +A ++F+EM   +                               I   + +D +  
Sbjct: 191 GLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLL 250

Query: 220 ------RKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
                     G +  AR  F  M +++L    +M+ GY+K G L  AQ +F++  ++++ 
Sbjct: 251 TALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLV 310

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
            W+ MI  Y +   P+EAL +F EM C G++PDV+S+   ISACA +G LD  KW+H  +
Sbjct: 311 CWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCI 370

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
             + +  ++ +  ALI+MY KCG LD  R +F  M ++NV+S++ MI  L M+G   +AL
Sbjct: 371 HVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDAL 430

Query: 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
             FA+M+ E +  +++ F+GVL  CSHSGL  EG +IF SM     I PKLEHY C+VDL
Sbjct: 431 SLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDL 490

Query: 454 LSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLY 513
             RA  L +AL ++ESMP+  N+ +WG+L+ ACR H  + L +   + ++EL+ D  G  
Sbjct: 491 FGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGAL 550

Query: 514 VLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           VL+SNIYA    WE    IR++M ++ + KE G S I+ +G   EF+ G+    QS E+
Sbjct: 551 VLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEI 609


>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
 gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
          Length = 611

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/564 (37%), Positives = 323/564 (57%), Gaps = 29/564 (5%)

Query: 13  NPLVSLLQISKT-----TTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAE 66
           N ++SLL   KT     T+H L +    T N   T+   LS+L+   + S      + A 
Sbjct: 5   NTILSLLPKCKTLLQFKTSHALILTTPTTIN---TKIIPLSKLIDFCVDSHFDEYFNYAN 61

Query: 67  RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
            LF QI+ PN Y+ N+MI+GY +S+NP  +L  Y  M + G   D++T+PFVLKAC  + 
Sbjct: 62  LLFRQIHSPNVYIFNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPFVLKACSFIY 121

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
             V G  +H  ++K GF  +V+V  GL+ MY +C +M     VF+     ++V+W  ++ 
Sbjct: 122 DQVSGKCVHSCILKSGFEANVYVATGLLNMYVECKNMESGLKVFDKIPKWNVVAWTCLIN 181

Query: 187 GFVECGEMGKAREVFDEMPQ-----KDAISWSIMIDGYRKKKGDISSARILFEHM----- 236
           G+V   +  +A EVF EM +      +    + +I   R +  D+ + R + E +     
Sbjct: 182 GYVINDQPREALEVFKEMGRWGVEANEVTMVNALIACARCR--DVDTGRWVHERVCKAGY 239

Query: 237 -PI-----KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
            P       ++I   ++++ YAK G L  A++LFN+MPERN+ +W+ MI+ Y Q+    E
Sbjct: 240 DPFVFASNSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYNQYERYNE 299

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
           AL LF  ML  G  PD  + +  +S CA+   L LG+ +H ++ +S +  D+ + TAL+D
Sbjct: 300 ALGLFFYMLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNMAKDIALATALLD 359

Query: 351 MYMKCGSLDEARRIFY-SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM-ETEGIPKDD 408
           MY K G L  A++IF  S+ KK+V+ +  MI  L ++G G EAL  F  M E   +  D 
Sbjct: 360 MYAKNGELGSAQKIFNNSLEKKDVVMWTSMINALAIHGHGNEALSLFQIMQEDSSLVPDH 419

Query: 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468
           + ++GVL ACSH GL  E  + F  M +  GI P+ EHYSC+VDLLSRAG   +A  ++E
Sbjct: 420 ITYIGVLFACSHVGLVEEAQKQFNLMTKSYGILPEKEHYSCMVDLLSRAGHFREAEKLME 479

Query: 469 SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528
           +M ++PN+A+WG LL  C+ H+N+ +A  V   L EL+    G+Y LLSNIYA++G WE 
Sbjct: 480 TMSIRPNIAIWGALLNGCQIHENIPVASQVKVRLAELEPIQSGIYALLSNIYANSGKWEE 539

Query: 529 ALRIRKMMRKRKIKKETGRSVIEI 552
             R RKMM+ ++I K  G S +E+
Sbjct: 540 VNRTRKMMKHKRIAKTIGHSSVEM 563


>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
 gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/593 (36%), Positives = 333/593 (56%), Gaps = 48/593 (8%)

Query: 14  PLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSL-TSPNTLNMDQAERLFNQI 72
           P + LL+  K  + I QI A+L T   I   F  +++++S  TS +   ++ A  +F + 
Sbjct: 17  PTLVLLKKCKRLSDINQIHARLLTTGFIKNTFLTTKIILSFSTSLHAPLIEFARFIFFRH 76

Query: 73  YQPN-----------TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +               ++ N +I+ Y+   +P++A+     M   G   D +T   VLKA
Sbjct: 77  HAFEFDEKEEEEEKDPFLWNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKA 136

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  +  + EG +IHG + K+ F  D+F+ N LI  Y KCG +  A  VF+    +D VS+
Sbjct: 137 CSRVGLVKEGMQIHGLLKKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSY 196

Query: 182 NLVLRGFVECGEMGKAREVFD----------------------------------EMPQK 207
           N ++ G+V+ G +  AR VFD                                  +MP++
Sbjct: 197 NSMIDGYVKGGRIDLARVVFDCIPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPER 256

Query: 208 DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
           D ISW+ MIDG   K G +  A+ LF+ MP +D++SW +MIDGYAK G +  A+ LF+EM
Sbjct: 257 DLISWNSMIDGC-VKCGRMEDAQGLFDRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEM 315

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLG 326
           PER+V +++ M+ GY Q+G   EAL +F  M   G    D  +++ A+SA AQ+G +D G
Sbjct: 316 PERDVVAYNAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKG 375

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
             IH F++    ++D  +  ALIDMY KCGS++ A  +F ++ +K+V  +N +I GL ++
Sbjct: 376 VAIHRFIEEIGFSLDGRLGVALIDMYSKCGSIENAMMVFENIKEKSVDHWNAIIGGLAIH 435

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
           G GE A     +ME   +  DD+ F+G+L AC H+GL  EG   F+ M+R   +EPKL+H
Sbjct: 436 GLGELAFDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRRVHKVEPKLQH 495

Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506
           Y C+VD+L RAG +E+A N VE MP +PN  +W +LL AC+ H++  + + V E L+ L 
Sbjct: 496 YGCMVDILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACKTHESFNVGQPVAENLMRLD 555

Query: 507 ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEF 559
           +     YVL SN+YA  G W    ++R MM+++ +KK  G S IE++G++  F
Sbjct: 556 SPSPSSYVLASNMYAGLGKWNDVRKVRAMMKQKNLKKIPGCSWIELEGHVYAF 608


>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 634

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/593 (34%), Positives = 331/593 (55%), Gaps = 47/593 (7%)

Query: 13  NP--LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTS----PNTLNMDQAE 66
           NP  ++ LLQ  ++  H+ Q+ A L  +        + QL+ S  +       + +  A 
Sbjct: 2   NPCHVLELLQQCRSIRHLDQLHAHLLAHGPSAVASVVPQLVASYCALSGRAGDVALCHAR 61

Query: 67  RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
           R+F+++  P+ + +N++IR Y+ S  PQ+AL  + ++ R+G+L + +T PFVLKAC    
Sbjct: 62  RMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSRAR 121

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF-EGSEIKDLVSWNLVL 185
                   HG  +K+G++  VFV N L+   +  G +  +R +F E +  +++VSWN ++
Sbjct: 122 AAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMI 181

Query: 186 RGFVECGEMGKAREVFDEMPQK-------------------------------------- 207
            G  + GE  +A  +F EM ++                                      
Sbjct: 182 GGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSR 241

Query: 208 -DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNE 266
            D I  + ++D Y  K GD+  A   F+ MPIK+++SW SM+   AK G + AA+  F +
Sbjct: 242 VDLILGNALVDMY-GKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQ 300

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326
           MPERN+ SW+ MI  Y Q G   E L L+  M   G+ PD +++ G +S   Q G L  G
Sbjct: 301 MPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASG 360

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
           + IH +++ S     + V  +LIDMY +CG +D +  +F  M  KN IS+NV+I  L M+
Sbjct: 361 RMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAMH 420

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
           G  +EA+  F  M ++    D++ F+G+L ACSH GL  +G   F++M+    ++P++EH
Sbjct: 421 GRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEVEH 480

Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506
           Y+C+VDLL R G L +A+++++ MPMKP++ +WG L+ ACR H +V + ++ ++ L+EL+
Sbjct: 481 YACMVDLLGRHGHLAKAVDLIKDMPMKPDVVVWGALIGACRIHGHVEIGKLAIKQLLELE 540

Query: 507 ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEF 559
             + GL+VL+SN+  +   WE   R+RK+MR R  KK+ G S IEI+ +I EF
Sbjct: 541 GINGGLFVLISNLLYETRQWEDMKRLRKLMRDRGTKKDMGVSSIEINNSIHEF 593


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/561 (36%), Positives = 312/561 (55%), Gaps = 71/561 (12%)

Query: 16  VSLLQISKTTTHILQILAQL--TTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI- 72
           + LL+   +   + Q+ AQ+  T   L   P T   L+ + T     +   A+++F  + 
Sbjct: 32  IDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTP----SFHYAQQIFKCVE 87

Query: 73  -YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
             +P T++ N+ ++   +  +P  A+  +  +++  +  D +T   VL+AC  L+ L  G
Sbjct: 88  KQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNG 147

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
             +HG V K+GF  ++++ N ++ +Y+                                C
Sbjct: 148 RILHGVVEKVGFRSNLYLQNMIVHLYAS-------------------------------C 176

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGY 251
           GEMG+AR                                +LFE MP +D+++WN MI   
Sbjct: 177 GEMGEAR--------------------------------LLFEKMPQRDVVTWNIMIAQL 204

Query: 252 AKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
            K GD   A  LF+ MPERNV SW+ MI GY Q G  KEA++LF +M   GV+ + ++V+
Sbjct: 205 IKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVV 264

Query: 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
             ++ACA +GALDLG  IH +  R     ++ +   LIDMY+KCG L+EA ++F  M ++
Sbjct: 265 AVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEER 324

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
            V+S++ MI GL M+G  EEAL+ F+ M   GI  + + F+G+L ACSH GL +EG R F
Sbjct: 325 TVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFF 384

Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN 491
            SM R  GI P++EHY C+VDLLSRAG L +A   + +MPMKPN  +WG LL ACR H+N
Sbjct: 385 ASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKN 444

Query: 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
           V +AE  ++ L+EL   + G YV+LSNIYA+AG WE   R+RK M+ R++KK  G S I 
Sbjct: 445 VEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSIT 504

Query: 552 IDGNIKEFVSGEIFDVQSEEL 572
           +DG + EFV+GE     +E++
Sbjct: 505 VDGVVHEFVAGEESHPDTEQI 525


>gi|449446173|ref|XP_004140846.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 488

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/479 (38%), Positives = 289/479 (60%), Gaps = 13/479 (2%)

Query: 83  MIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMG 142
           MIRGY  +    +++S Y ++ ++GL   ++TYPFVLK+C  L    +G ++H  ++K G
Sbjct: 1   MIRGYAFNGPAHQSVSLYGDLLQRGLKPHSFTYPFVLKSCADLGWFWDGKKVHCRILKTG 60

Query: 143 FLCDVFVVNGLIGMY-----------SKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
           F  +  V + L  +Y           +  G    AR VF+   ++ +  WN ++  +   
Sbjct: 61  FSLNSSVSDALFHLYVNFSKFTGPKDAADGMASDARKVFDEMCVRSVEVWNRMILRYTST 120

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGY 251
           G++  A+++F+ M  +D +SW+ MI GY  K G++  AR LFE MP K+++SW SMI  Y
Sbjct: 121 GDVSGAQKLFNTMEDRDTVSWNTMISGY-IKVGEVMKARELFEKMPEKNVVSWTSMISAY 179

Query: 252 AKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
           AK GDL  A+  FN+MP+RNV SW+ MI  Y QHG+ +EAL LF +ML +G+ PD  + +
Sbjct: 180 AKAGDLATARMFFNKMPQRNVVSWNSMISSYVQHGDFQEALDLFNQMLSEGITPDGYTFV 239

Query: 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
              SAC+ +G L LG  IH +       + +I  TALI+MY KCG ++ A  +F  + KK
Sbjct: 240 SVFSACSHLGNLMLGTKIH-YAIDDFSQLGVIAATALIEMYAKCGDINRAFNLFIKIGKK 298

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           +V  +NVM+  L ++G  ++ALK F+ M+ +G+  +D  FLG L ACSH G+  EG  IF
Sbjct: 299 DVFFWNVMLKSLALHGQAQDALKLFSLMQKQGLKPNDFTFLGALFACSHGGMVEEGQTIF 358

Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN 491
             M++   I P++EH+ C+VDLLSR G LE+AL++V+ MP + ++A+WG LL  C+   +
Sbjct: 359 DMMEKEYKIRPRIEHFGCIVDLLSRNGRLEEALDVVDKMPFEADVAIWGALLGGCKLRGD 418

Query: 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
              A  +VE   +L++ + G++V  SN+YA    W  A+  R+ M    I K+TG+S +
Sbjct: 419 FKRAGEIVERARKLRSKEGGIHVSFSNMYASVEQWAEAVNAREKMENENILKKTGQSSV 477



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 156/351 (44%), Gaps = 61/351 (17%)

Query: 52  MSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVD 111
           M L   +T ++  A++LFN +   +T   NTMI GY +     KA   +  M  K     
Sbjct: 113 MILRYTSTGDVSGAQKLFNTMEDRDTVSWNTMISGYIKVGEVMKARELFEKMPEK----- 167

Query: 112 NYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE 171
                                             +V     +I  Y+K G +  AR  F 
Sbjct: 168 ----------------------------------NVVSWTSMISAYAKAGDLATARMFFN 193

Query: 172 GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR--------KKK 223
               +++VSWN ++  +V+ G+  +A ++F++M     +S  I  DGY            
Sbjct: 194 KMPQRNVVSWNSMISSYVQHGDFQEALDLFNQM-----LSEGITPDGYTFVSVFSACSHL 248

Query: 224 GDISSARILFEHMPIKDL-----ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM 278
           G++     +  H  I D      I+  ++I+ YAK GD+  A  LF ++ +++VF W++M
Sbjct: 249 GNLMLGTKI--HYAIDDFSQLGVIAATALIEMYAKCGDINRAFNLFIKIGKKDVFFWNVM 306

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338
           +   A HG  ++AL LF  M  QG++P+  + +GA+ AC+  G ++ G+ I   M++   
Sbjct: 307 LKSLALHGQAQDALKLFSLMQKQGLKPNDFTFLGALFACSHGGMVEEGQTIFDMMEKEYK 366

Query: 339 TMDMIVQTA-LIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG 387
               I     ++D+  + G L+EA  +   M  + +V  +  ++ G  + G
Sbjct: 367 IRPRIEHFGCIVDLLSRNGRLEEALDVVDKMPFEADVAIWGALLGGCKLRG 417



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 110/240 (45%), Gaps = 10/240 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  A   FN++ Q N    N+MI  Y Q  + Q+AL  +  M  +G+  D YT+  V  
Sbjct: 184 DLATARMFFNKMPQRNVVSWNSMISSYVQHGDFQEALDLFNQMLSEGITPDGYTFVSVFS 243

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L+ GT+IH  +     L  V     LI MY+KCG +  A ++F     KD+  
Sbjct: 244 ACSHLGNLMLGTKIHYAIDDFSQL-GVIAATALIEMYAKCGDINRAFNLFIKIGKKDVFF 302

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR---KKKGDISSARILFEHM- 236
           WN++L+     G+   A ++F  M ++          G        G +   + +F+ M 
Sbjct: 303 WNVMLKSLALHGQAQDALKLFSLMQKQGLKPNDFTFLGALFACSHGGMVEEGQTIFDMME 362

Query: 237 ---PIKDLIS-WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEA 291
               I+  I  +  ++D  ++ G L  A  + ++MP E +V  W  ++ G    G+ K A
Sbjct: 363 KEYKIRPRIEHFGCIVDLLSRNGRLEEALDVVDKMPFEADVAIWGALLGGCKLRGDFKRA 422


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  370 bits (951), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 201/562 (35%), Positives = 320/562 (56%), Gaps = 50/562 (8%)

Query: 45  FTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMK 104
           FT + L+  LT    L  D+A RLF  + +P+    N+M+ G+ Q    +++L ++V M 
Sbjct: 82  FTWNSLISVLTKSGFL--DEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMH 139

Query: 105 RKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG 164
           R+  L++ Y++   L AC  LM L  GT++H  V K  +  DV++ + LI MYSKCG + 
Sbjct: 140 REDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVA 199

Query: 165 CARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVF----------DEMP--------- 205
           CA  VF G   ++LV+WN ++  + + G   +A EVF          DE+          
Sbjct: 200 CAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACA 259

Query: 206 ---------------------QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
                                + D +  + ++D Y  K   ++ AR +F+ M I++++S 
Sbjct: 260 SLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMY-AKCSKVNEARRVFDRMSIRNVVSE 318

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
            SM+ GYA+   + AA+ +F++M +RNV SW+ +I GY Q+G  +EAL LFR +  + + 
Sbjct: 319 TSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIW 378

Query: 305 PDVISVMGAISACAQVGALDLGKWIHV------FMKRSRITMDMIVQTALIDMYMKCGSL 358
           P   +    +SACA +  L LG+  H       F  +S    D+ V  +LIDMYMKCGS+
Sbjct: 379 PTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSI 438

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
           ++  R+F  M +++ +S+N +I G   NG+G EAL+ F +M   G   D +  +GVL AC
Sbjct: 439 EDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCAC 498

Query: 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
           SH+GL  EG   F SM+ H G+ P  +HY+C+VDLL RAG L +A N++E+MP+ P+  +
Sbjct: 499 SHAGLVEEGRHYFFSMEEH-GLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVV 557

Query: 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
           WG+LL AC+ H N+ + +   E L+E+   + G YVLLSN+YA+ G W   +R+RK+MR+
Sbjct: 558 WGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQ 617

Query: 539 RKIKKETGRSVIEIDGNIKEFV 560
           + + K+ G S IE++  +  F+
Sbjct: 618 QGVTKQPGCSWIEVESRVHVFL 639



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/470 (25%), Positives = 215/470 (45%), Gaps = 95/470 (20%)

Query: 103 MKRKGLLVDNY---TYPF--VLKACGVLMGLVEGTE-IHGEVVKMGFLCDVFVVNGLIGM 156
           M + GL+ D Y   + PF  +L +C +      GT  +H  ++   F  ++F+ N LI +
Sbjct: 1   MAKHGLVRDLYLPNSSPFAKLLDSC-LRSRSARGTRLVHARILMTQFSMEIFIQNRLIDV 59

Query: 157 YSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMI 216
           Y KC  +  AR +F+    ++  +WN ++    + G + +A  +F  MP+ D  SW+ M+
Sbjct: 60  YGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMV 119

Query: 217 DGYRKKK------------------------GDISSA--------------RILFEHMPI 238
            G+ +                          G   SA               ++ +    
Sbjct: 120 SGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYS 179

Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
            D+   +++ID Y+K G +  A+++F+ M ERN+ +W+ +I  Y Q+G   EAL +F  M
Sbjct: 180 TDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRM 239

Query: 299 LCQGVRPDVISVMGAISACAQVGALDLGKWIHV-FMKRSRITMDMIVQTALIDMYMKCGS 357
           +  G+ PD +++   +SACA + AL  G  IH   +K ++   D+++  AL+DMY KC  
Sbjct: 240 MDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSK 299

Query: 358 LDEARRI-------------------------------FYSMTKKNVISYNVMIAGLGMN 386
           ++EARR+                               F  MT++NV+S+N +IAG   N
Sbjct: 300 VNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQN 359

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIAC-----------SHSGLATEGYRIFQSMK 435
           G  EEAL+ F  ++ E I      F  +L AC           +H+ +  +G+  FQS  
Sbjct: 360 GENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFE-FQS-- 416

Query: 436 RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
              G E  +   + L+D+  + G +E    + E M  +  ++ W  +++ 
Sbjct: 417 ---GAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVS-WNAIIVG 462



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 167/327 (51%), Gaps = 5/327 (1%)

Query: 215 MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
           +ID Y K    +  AR LF+ MP ++  +WNS+I    K G L  A +LF  MPE +  S
Sbjct: 56  LIDVYGKCDC-LDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCS 114

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W+ M+ G+AQH   +E+L  F +M  +    +  S   A+SACA +  L++G  +H  + 
Sbjct: 115 WNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVS 174

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
           +SR + D+ + +ALIDMY KCGS+  A  +F  M ++N++++N +I     NG   EAL+
Sbjct: 175 KSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALE 234

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
            F +M   G+  D++    V+ AC+      EG +I   + +       L   + LVD+ 
Sbjct: 235 VFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMY 294

Query: 455 SRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYV 514
           ++  ++ +A  + + M ++ N+    +++       +V  A  +   + +        + 
Sbjct: 295 AKCSKVNEARRVFDRMSIR-NVVSETSMVSGYARAASVKAARFMFSKMTQRNVVS---WN 350

Query: 515 LLSNIYADAGMWEHALRIRKMMRKRKI 541
            L   Y   G  E ALR+ +++++  I
Sbjct: 351 ALIAGYTQNGENEEALRLFRLLKRESI 377


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  370 bits (950), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 215/608 (35%), Positives = 328/608 (53%), Gaps = 78/608 (12%)

Query: 10  SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLF 69
           +L +   SLLQ   +   + QI AQL TN  I +P +    +  L      +   A   F
Sbjct: 30  ALSDKFNSLLQQCLSIKQLKQIHAQLLTNS-IHKPNSFLYKIADLK-----DFAYASVFF 83

Query: 70  NQIYQPNTYMHNTMIRGYTQSSNPQK-ALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           + I  P  Y  N MIRG + + N    AL FY  MK  GL  +N TYPF+  AC  L+ +
Sbjct: 84  SNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAV 143

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
             G   H  V++ G   D  V + LI MY++CG                           
Sbjct: 144 ENGRMGHCSVIRRGLDEDGHVSHSLITMYARCG--------------------------- 176

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK------------------------- 223
               +MG AR+VFDE+ QKD +SW+ MI GY K +                         
Sbjct: 177 ----KMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLV 232

Query: 224 ------GDISSARI--LFEHMPIKDLISWN-----SMIDGYAKIGDLVAAQQLFNEMPER 270
                 G++   ++    E   +++ ++ N     ++I  Y K GDLV+A+++F+ M ++
Sbjct: 233 SVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKK 292

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           +  +W+ MI GYAQ+G  +EA+ LF++M      PD I+++G +SACA +GALDLGK + 
Sbjct: 293 DKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVE 352

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
           ++        D+ V TAL+DMY KCGSLD A R+FY M  KN +S+N MI+ L  +G  +
Sbjct: 353 IYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQ 412

Query: 391 EALKCFAQMETEG--IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
           EAL  F  M  EG  +  +D+ F+GVL AC H+GL  EG R+F  M    G+ PK+EHYS
Sbjct: 413 EALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYS 472

Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508
           C+VDL SRAG LE+A + V +MP KP+  + G LL AC+  +N+ ++E V++ L+EL+  
Sbjct: 473 CMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPS 532

Query: 509 DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQ 568
           + G YV+ S +YA+   W+ + R+R +M+++ + K  G S I+I+  + EF +G++   +
Sbjct: 533 NSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQLHEFHAGDVLHQE 592

Query: 569 SEELELVI 576
             E+  ++
Sbjct: 593 WIEIHQIL 600


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 201/602 (33%), Positives = 329/602 (54%), Gaps = 41/602 (6%)

Query: 10  SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLF 69
           S  N ++  L   K+  HI Q+ A +     +      S L     S +++N+  A  LF
Sbjct: 13  SAANTILEKLSFCKSLNHIKQLHAHILRT--VINHKLNSFLFNLSFSSSSINLSYALNLF 70

Query: 70  NQIYQ-PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           + I   P + + N+++R  ++S  P+  + FY  ++  G   D  ++P +LKA   +  L
Sbjct: 71  SSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSAL 130

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
            EG E+HG   K+  L D FV  GL+ MY+ CG +  AR+VF+    +D+V+WN ++  +
Sbjct: 131 FEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERY 190

Query: 189 VECGEMGKAREVFDEMPQKDAIS------------------------WSIMIDGYRKKKG 224
              G + +A ++F+EM   + +                         +  +I+   +   
Sbjct: 191 CRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDT 250

Query: 225 DISSARI--------------LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER 270
            + +A +               F  M +++L    +M+ GY+K G L  A+ +F++   +
Sbjct: 251 HLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMK 310

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           ++  W+ MI  YA+  +P+EAL +F EM C G++PDV++++  ISAC  +G LD  KW+H
Sbjct: 311 DLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVH 370

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
            +   + +   + +  ALI+MY KCG LD AR +F  M  +NV+S++ MI    M+G   
Sbjct: 371 RYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEAS 430

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
           ++L  FAQM+ E +  +++ F+GVL  CSHSGL  EG +IF SM     I PK+EHY C+
Sbjct: 431 DSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCM 490

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           VDL  RA  L +AL ++ESMPM PN+ +WG+L+ ACR H  + L E+  + +++L+ D  
Sbjct: 491 VDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHD 550

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570
           G  VL+SNIYA    W++   IR +M K+K+ KE G S I+++G   EF+ G+    QS 
Sbjct: 551 GALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRHKQSN 610

Query: 571 EL 572
           E+
Sbjct: 611 EI 612


>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 600

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 198/578 (34%), Positives = 330/578 (57%), Gaps = 36/578 (6%)

Query: 1   MKTLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL 60
           M     ++ S K  L++ ++   T   +  + A +   + I + F + Q + +  + N++
Sbjct: 28  MPLQPPSRPSFKQTLLNRIKNCSTINELHGLCASMIKTNAIQDCFLVHQFISASFALNSV 87

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM-KRKGLLVDNYTYPFVL 119
           +       F Q+  PN +++N MI+G+     P +AL  YV+M +   +L  +YT+  ++
Sbjct: 88  HYPVFA--FTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLV 145

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           KAC  +  +  G  +H  + K GF   +FV   L+  YSK              EI    
Sbjct: 146 KACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKL-------------EI---- 188

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239
                         + +AR+VFDEM ++DA +W+ M+     + GD+ SAR LFE MP +
Sbjct: 189 --------------LSEARKVFDEMCERDAFAWTAMLSAL-ARVGDMDSARKLFEEMPER 233

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           +  +WN+MIDGY ++G++ +A+ LFN+MP +++ SW+ MI  Y+Q+   ++AL ++ EM 
Sbjct: 234 NTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMR 293

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
             G+ PD +++    SACA +GAL+LGK IH ++    + +D+ + +AL+DMY KCGSLD
Sbjct: 294 LNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLD 353

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
            +  IF+ +T KN+  +N +I GL ++G+ E+AL+ FA ME E I  + + F+ +L AC+
Sbjct: 354 LSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACT 413

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           H+GL  EG   F SM R   I P + HY C+VD+LS++G L +AL +++SM  +PN  +W
Sbjct: 414 HAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIW 473

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
           G LL  C+ H N  +AE  VE L+ L+  + G Y LL ++YA+   W     IR MM+++
Sbjct: 474 GALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEK 533

Query: 540 KI-KKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
            + KK  G S IE++G I +F +       S+++  ++
Sbjct: 534 GVEKKYPGSSWIELEGTIHQFSASADSHPDSDKIYFIL 571


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 207/561 (36%), Positives = 312/561 (55%), Gaps = 71/561 (12%)

Query: 16  VSLLQISKTTTHILQILAQL--TTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI- 72
           + LL+   +   + Q+ AQ+  T   L   P T   L+ + T     +   A+++F  + 
Sbjct: 32  IDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTP----SFHYAQQIFECVE 87

Query: 73  -YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
             +P T++ N+ ++   +  +P  A+  +  +++  +  D +T   VL+AC  L+ L  G
Sbjct: 88  KQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNG 147

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
             +HG V K+GF  ++++ N ++ +Y+                                C
Sbjct: 148 RILHGVVEKVGFRSNLYLQNMIVHLYAS-------------------------------C 176

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGY 251
           GEMG+AR                                +LFE MP +D+++WN MI   
Sbjct: 177 GEMGEAR--------------------------------LLFEKMPQRDVVTWNIMIAQL 204

Query: 252 AKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
            K GD   A  LF+ MPERNV SW+ MI GY Q G  KEA++LF +M   GV+ + ++V+
Sbjct: 205 IKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVV 264

Query: 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
             ++ACA +GALDLG  IH +  R     ++ +   LIDMY+KCG L+EA ++F  M ++
Sbjct: 265 AVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEER 324

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
            V+S++ MI GL M+G  EEAL+ F+ M   GI  + + F+G+L ACSH GL +EG R F
Sbjct: 325 TVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFF 384

Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN 491
            SM R  GI P++EHY C+VDLLSRAG L +A   + +MPMKPN  +WG LL ACR H+N
Sbjct: 385 ASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKN 444

Query: 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
           V +AE  ++ L+EL   + G YV+LSNIYA+AG WE   R+RK M+ R++KK  G S I 
Sbjct: 445 VEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSIT 504

Query: 552 IDGNIKEFVSGEIFDVQSEEL 572
           +DG + EFV+GE     +E++
Sbjct: 505 VDGVVHEFVAGEESHPDTEQI 525


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 201/574 (35%), Positives = 333/574 (58%), Gaps = 54/574 (9%)

Query: 9   FSLKNPLV--SLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAE 66
           FS + PL+        KT   + Q+ A       I +P T ++++    + ++ ++D A 
Sbjct: 14  FSPQPPLILSKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVI-KFCAFSSRDIDYAR 72

Query: 67  RLFNQIYQPNTYMHNTMIRGYTQSSNPQ---KALSFYVNMKRKGLLVDN-YTYPFVLKAC 122
            +F Q+ +PN +  NT++R   ++++     +AL  +  M   G +  N +T+P VLKAC
Sbjct: 73  AVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKAC 132

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
                L EG +IHG +VK GF  D FV++ L+ MY  C  M  A S+F     K++V ++
Sbjct: 133 ARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLF----CKNVVDFD 188

Query: 183 LVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLI 242
                       G  +   D+                RK+ G++               +
Sbjct: 189 ------------GSCQMELDK----------------RKQDGNV---------------V 205

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
            WN MIDG  ++GD+ +A+ LF+EMP+R+V SW++MI GYAQ+G+  EA+ LF+EM    
Sbjct: 206 LWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSN 265

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           + P+ ++++  + A A++GAL+LGKWIH++  +++I +D ++ +AL+DMY KCGS+DEA 
Sbjct: 266 IDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEAL 325

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
           ++F ++ K+N I+++ +I    M+G  E+A+  F  M   G+  +D+ ++G+L ACSH+G
Sbjct: 326 QVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAG 385

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
           L  EG   F  M +  G++P++EHY C+VDLL RAG LE+A  ++ +MP++P+  +W  L
Sbjct: 386 LVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKAL 445

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
           L AC+ H+N+ + E V E L+EL   D G YV LSN+YA  G WE   R+R  M+   I+
Sbjct: 446 LGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIR 505

Query: 543 KETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
           K+ G S IEI G I EF+  +    +++E++ ++
Sbjct: 506 KDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAML 539


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 194/519 (37%), Positives = 298/519 (57%), Gaps = 8/519 (1%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           M QAE +F+ I   N+++ N MIRGY  +  P K+L  Y  M   G   DN+TYPFVLKA
Sbjct: 111 MSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKA 170

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           CG L+ +  G  +H EVV  G   D++V N L+ MY+K G MG AR VF+    +DL SW
Sbjct: 171 CGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSW 230

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR--ILFEHMPIK 239
           N ++ G+ +  + G A  VFD M +    +    + G      D+ + +   +     ++
Sbjct: 231 NTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVR 290

Query: 240 DLIS------WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
           + I        NS+I+ Y     +V A++LF  +  ++  SW+ MI GYA++G+  E+L 
Sbjct: 291 NSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLR 350

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           LFR M   G  PD ++ +  + AC Q+ AL  G  IH ++ +     + IV TAL+DMY 
Sbjct: 351 LFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYS 410

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCGSL  +RR+F  M  K+++S++ M+AG G++G G EA+     M+   +  D+ +F  
Sbjct: 411 KCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTS 470

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           +L ACSH+GL  EG  IF  M++   ++P L HYSC+VDLL RAG L++A  I+ +M +K
Sbjct: 471 ILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIK 530

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
           P   +W  LL A R H+N+ LAE+  + + ++       Y+ LSNIYA    W+   R+R
Sbjct: 531 PTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVR 590

Query: 534 KMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            M+R++ +KK  G S IE+D  +  F+ G+    Q+E++
Sbjct: 591 AMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQTEDI 629



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 196/408 (48%), Gaps = 26/408 (6%)

Query: 115 YPFVLKACGVLM-------GLVEGTEIHGEVVKMGFL-CDVFVVNGLIGMYSKCGHMGCA 166
           YP     CG L+          +G ++H  ++    L  + ++   L   Y+ CG M  A
Sbjct: 55  YPLTSLQCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQA 114

Query: 167 RSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKK 222
             +F+G  +K+   WN ++RG+   G   K+  ++ EM     + D  ++  ++    K 
Sbjct: 115 EVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVL----KA 170

Query: 223 KGD---ISSARILFEHMPI----KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
            GD   +   R +   + +     D+   NS++  YAK GD+  A+ +F+ M ER++ SW
Sbjct: 171 CGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSW 230

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
           + MI GYA++ +   A  +F  M   G+  D  +++G +SACA + A+  GK IH +  R
Sbjct: 231 NTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVR 290

Query: 336 SRI-TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
           + I   +     +LI+MY  C  + +ARR+F  +  K+ +S+N MI G   NG   E+L+
Sbjct: 291 NSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLR 350

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
            F +M  +G   D + F+ VL AC        G  I   + +  G +      + LVD+ 
Sbjct: 351 LFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKK-GFDANTIVGTALVDMY 409

Query: 455 SRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
           S+ G L  +  + + MP K +L  W  ++     H     A  +++G+
Sbjct: 410 SKCGSLACSRRVFDEMPDK-SLVSWSAMVAGYGLHGRGREAISILDGM 456



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 155/332 (46%), Gaps = 33/332 (9%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +M  A  +F+++ + +    NTMI GY ++++   A   +  M + GL  D  T   +L 
Sbjct: 211 DMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLS 270

Query: 121 ACGVLMGLVEGTEIHGEVVKMGF-LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           AC  L  + EG  IHG  V+      + F  N LI MY  C  M  AR +FE    KD V
Sbjct: 271 ACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTV 330

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMP-------------------QKDAISWSIMIDGYR 220
           SWN ++ G+   G+  ++  +F  M                    Q  A+ + + I  Y 
Sbjct: 331 SWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYL 390

Query: 221 KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMID 280
            KKG        F+     + I   +++D Y+K G L  ++++F+EMP++++ SWS M+ 
Sbjct: 391 VKKG--------FD----ANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVA 438

Query: 281 GYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM-KRSRIT 339
           GY  HG  +EA+ +   M    V PD       +SAC+  G +  GK I   M K   + 
Sbjct: 439 GYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVK 498

Query: 340 MDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
             +   + ++D+  + G LDEA  I  +M  K
Sbjct: 499 PALSHYSCMVDLLGRAGHLDEAYVIIRTMEIK 530



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 5/195 (2%)

Query: 326 GKWIHVFM-KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
           G+ +H  M   S +  +  + T L   Y  CG + +A  IF  +  KN   +N MI G  
Sbjct: 78  GQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYA 137

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444
            NG   ++L  + +M   G   D+  +  VL AC    L   G R+   +   CG+E  +
Sbjct: 138 SNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVV-CGLESDI 196

Query: 445 EHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVE--GL 502
              + L+ + ++ G++  A  + + M  + +L  W T++     + +   A +V +  G 
Sbjct: 197 YVGNSLLAMYAKFGDMGTARMVFDRMAER-DLTSWNTMISGYAKNADSGTAFLVFDLMGK 255

Query: 503 VELKADDCGLYVLLS 517
             L AD   L  LLS
Sbjct: 256 AGLFADCTTLLGLLS 270


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 207/578 (35%), Positives = 318/578 (55%), Gaps = 20/578 (3%)

Query: 14  PLVSLLQISKTTTHILQILAQL----TTNDLITEPF-TLSQLLMSLTSPNT------LNM 62
           P + LL   K+   I QI A +    TT    T P  +L   + SL   +        N+
Sbjct: 28  PQLLLLSSCKSVREIKQIHASIIKANTTRSTTTLPIISLCTKITSLLQQDVHLADSIQNL 87

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNP-QKALSFYVNMKRKGLLVDNYTYPFVLKA 121
             A  L N  +Q   Y+ N +I+  + S+N      S Y  M   GL  D YT P++LKA
Sbjct: 88  WYASSLANFCHQNPVYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLPYLLKA 147

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C      +E  +IH   +K G   ++FV N L+  Y+  G +     VF+     DL+SW
Sbjct: 148 CSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISW 207

Query: 182 NLVLRGFVECGEMGKAREVFDEMP-QKDAISWSIMIDGYRKKKGDISSARILFEHMPI-- 238
             +++ + + G   +A   F  M    D ++  +++     + GD +  + +  +M    
Sbjct: 208 TTLIQAYSKMGYPSEAIAAFFRMNCTADRMTLVVVLSAC-SQLGDFTLGKKILAYMDHHL 266

Query: 239 ----KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
                D+   N+++D Y K G    A+QLF+ MP +N+ SW+ MI G A  G  KEAL++
Sbjct: 267 FDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHM 326

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           FR M   G++PD ++++G +++CA +G L+LGKW+H ++ ++ +  D  V  AL+DMY K
Sbjct: 327 FRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAK 386

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CGS+D+A  +F +M  K+V SY  MI G  M+G  + AL  F++M   G+  D +  +GV
Sbjct: 387 CGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGV 446

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L ACSH+GL  EG R FQ M R   ++P+ EHY C+VDLL RAG + +A      MP+ P
Sbjct: 447 LSACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPIVP 506

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           + ++WG+LL AC+ H  V L E V++ L+E++ +  G Y+L+SNIY+ A  W  AL+ RK
Sbjct: 507 DASVWGSLLGACKIHAKVELGETVIQKLIEMEPERDGAYILMSNIYSSANRWRDALKWRK 566

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            M++  IKK  G S IE+DG + EF  GE    +S E+
Sbjct: 567 AMKQNNIKKTPGCSSIEVDGMVHEFRKGEKSHPKSREM 604


>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 212/598 (35%), Positives = 342/598 (57%), Gaps = 53/598 (8%)

Query: 10  SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLM--SLTSPNTLNMDQAER 67
           +LK+  + LL+   T  H  QILAQ+   +LI + F +S+L++  ++T P   N+D A  
Sbjct: 29  ALKHATLILLEKCSTRDHFKQILAQIMRINLIGQTFPMSRLILFSAITHPE--NLDMAVL 86

Query: 68  LF-NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
           LF +    PN Y++NTMI   + S N  ++ +FY ++    +  +  T+ F+L+A   L 
Sbjct: 87  LFRHHTPHPNLYIYNTMISALSLSLN--QSFAFYNSLLSSCIYPNRSTFLFLLQASKFLS 144

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
            +++   IH   +  G     ++ N L+ +Y +   MG A  VF+     D VS+N+++ 
Sbjct: 145 QVMQ---IHCHAIITGSFYYGYLQNTLMKIYLENEKMGLAYQVFQQMAAPDAVSFNIMIF 201

Query: 187 GFVE--------------------------------CGEMGKA---REVFDEMPQKDAIS 211
           G+ +                                CG +G A   + V   + ++  I 
Sbjct: 202 GYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIK 261

Query: 212 WSIMI------DGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
            S +I      D Y K K ++  A+ +F  +  KD ISWN+MI GYAK+G+L  A   F 
Sbjct: 262 SSNLILNNALLDMYVKCK-ELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFE 320

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
           +MP R++ SW+ +I GYAQ G+      LF  M+ + + PD ++++  +SA A++GAL  
Sbjct: 321 DMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHH 380

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
           G+WIH ++ R ++ +D  + +A IDMY KCGS+  A  +F  +T+K+V  +  MI G   
Sbjct: 381 GRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAF 440

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           +G+G +AL+ F +M+   +P + + F+ VL ACSHSG  ++G RIF SMK   GIEP +E
Sbjct: 441 HGYGSKALQLFYEMQEYVMP-NQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVE 499

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
           HY CLVDLL R+G   +  +++E MPMKP+ ++WG +L ACR + N+ +AE+  + L++L
Sbjct: 500 HYGCLVDLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSACRAYGNIEIAEIAGKELLKL 559

Query: 506 KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           + +  G YVLLSNIYA +G W+H+ +IR++M  R +KK  G S + +DG I EFV+ +
Sbjct: 560 EPEKEGGYVLLSNIYATSGRWKHSDKIREIMESRGVKKTAGCSSVVVDGIIHEFVAAD 617


>gi|359486281|ref|XP_003633424.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g45350, chloroplastic-like [Vitis vinifera]
          Length = 704

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 207/551 (37%), Positives = 321/551 (58%), Gaps = 40/551 (7%)

Query: 67  RLFNQIY--QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           R F + Y  Q N+++ N +I+ ++   +P++    +  M   G+ VD +++  VLKAC  
Sbjct: 69  RHFGRKYRKQDNSFIWNAIIKSFSHKEDPREVFVIFNLMLESGVCVDKFSFSLVLKACSR 128

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L  + EG +IHG + KM    DVF+ N L+ +Y +CG +G  R +F+    KD VS+N +
Sbjct: 129 LGLIKEGMQIHGLLGKMEIGSDVFLQNCLMCLYLRCGCLGIVRQLFDRMMKKDSVSFNSM 188

Query: 185 LRGFVECGEMGKAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLI 242
           + G+V+ G +  A E+FD MP  QK  ISW+ MI  Y + +  +  A  LFE MP KDLI
Sbjct: 189 IDGYVKHGMVKSAWELFDVMPMEQKILISWNSMISEYARSEERLKVAWELFEEMPKKDLI 248

Query: 243 SWNSMIDG-------------------------------YAKIGDLVAAQQLFNEMPERN 271
           SWNSMI+G                               +AK+G++  A+ LF EMPE +
Sbjct: 249 SWNSMINGCVKCGKMENDHHLFNRMPKRXVVSXANMVNGHAKLGEIDIARGLFVEMPEMD 308

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV 331
           V S + M+  Y Q+G   E+L  F +ML + +  D  +++  +SA AQ+G  D G  +H 
Sbjct: 309 VISCNAMMARYVQNGYLMESLKNFHDMLSKELFLDNATLLITLSAIAQLGHFDEGVALHC 368

Query: 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391
           +++ +  ++   +  ALID Y KCGS+D A  +F  +  K++  +N +++GL ++G GE 
Sbjct: 369 YIEDNGFSLSEKLGVALIDTYAKCGSIDNALSVFEDIDNKSIDHWNAILSGLAIHGLGEV 428

Query: 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
           A + F +ME   +  +D+ F+GVL AC+H+GL  EG   F+ MKR   +EPKL+HY C+V
Sbjct: 429 AFELFMEMEKLFVKPNDITFIGVLNACNHAGLVKEGLMCFELMKRVDKVEPKLQHYVCMV 488

Query: 452 DLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511
           D+L +AG +E+    VE M ++PN  +W TLL ACRNH+N T+ E V + L+ + + +  
Sbjct: 489 DILGQAGHVEETKKFVEKMSIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYNLS 548

Query: 512 LYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQS-- 569
            YVLLSNIYA  G+W    RIR MM++R +KK  G S IE++GN+ +F   +    Q+  
Sbjct: 549 SYVLLSNIYAGFGIWNDVHRIRMMMKQRDLKKIPGCSQIELEGNVHKFFVRDKSHPQAKT 608

Query: 570 ---EELELVIQ 577
              +ELE+ +Q
Sbjct: 609 GREKELEVALQ 619



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 95/235 (40%), Gaps = 9/235 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A  LF ++ + +    N M+  Y Q+    ++L  + +M  K L +DN T    L A
Sbjct: 294 IDIARGLFVEMPEMDVISCNAMMARYVQNGYLMESLKNFHDMLSKELFLDNATLLITLSA 353

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
              L    EG  +H  +   GF     +   LI  Y+KCG +  A SVFE  + K +  W
Sbjct: 354 IAQLGHFDEGVALHCYIEDNGFSLSEKLGVALIDTYAKCGSIDNALSVFEDIDNKSIDHW 413

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR---KKKGDISSARILFEHMPI 238
           N +L G    G    A E+F EM +       I   G        G +    + FE M  
Sbjct: 414 NAILSGLAIHGLGEVAFELFMEMEKLFVKPNDITFIGVLNACNHAGLVKEGLMCFELMKR 473

Query: 239 KD-----LISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
            D     L  +  M+D   + G +   ++   +M  E N   W  ++     H N
Sbjct: 474 VDKVEPKLQHYVCMVDILGQAGHVEETKKFVEKMSIEPNDVVWRTLLSACRNHEN 528


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 189/513 (36%), Positives = 312/513 (60%), Gaps = 29/513 (5%)

Query: 83  MIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMG 142
           M+R Y+   +  K +  Y  M+  G+  D + YP ++K+ G       G   H  V+K+G
Sbjct: 1   MLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGT-----GGIGFHAHVLKLG 55

Query: 143 FLCDVFVVNGLIGMYSK---------CGHM-----GCARSVFEGSEIKDLVSWNLVLRGF 188
              D FV N +I MY++          G+      G A+ +F+    +++++W  ++ G+
Sbjct: 56  HGSDAFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGY 115

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM--PIKDLISWNS 246
            +  ++  AR  FD MP++  +SW+ M+ GY  + G    A  LF+ M    ++ ++WN+
Sbjct: 116 AKVKDLEAARRYFDCMPERSVVSWNAMLSGY-AQNGLAEEALRLFDEMLGAYRNSVTWNA 174

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML-CQGVRP 305
           MI  Y ++GDL +A++LFN MP RNV +W+ MI GYAQ+G    A+ LF+EM+  + + P
Sbjct: 175 MISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTP 234

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D ++++  ISAC  +GAL+LG W+  F+  ++I + +    A+I MY +CGS+++A+R+F
Sbjct: 235 DEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVF 294

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
             M  ++V+SYN +I+G   +G G EA+   + M+  GI  D + F+GVL ACSH+GL  
Sbjct: 295 QEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLE 354

Query: 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
           EG ++F+S+K     +P ++HY+C+VDLL R GELE A   +E MPM+P+  ++G+LL A
Sbjct: 355 EGRKVFESIK-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNA 409

Query: 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
            R H+ V L E+    L EL+ D+ G ++LLSNIYA AG W+   RIR+ M+K  +KK T
Sbjct: 410 SRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTT 469

Query: 546 GRSVIEIDGNIKEFVSGEIFDVQSEEL-ELVIQ 577
           G S +E  G + +F+  +    +S+++ +L+I+
Sbjct: 470 GWSWVEYGGKLHKFIVADRSHERSDDIYQLLIE 502



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 147/314 (46%), Gaps = 20/314 (6%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           QA+ LF+ + + N      M+ GY +  + + A  ++  M  + ++  N      + +  
Sbjct: 92  QAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWN-----AMLSGY 146

Query: 124 VLMGLV-EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
              GL  E   +  E+  +G   +    N +I  Y + G +  AR +F     +++V+WN
Sbjct: 147 AQNGLAEEALRLFDEM--LGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWN 204

Query: 183 LVLRGFVECGEMGKAREVFDEM-PQKDAISWSIMIDGYRKKKGDISS-------ARILFE 234
            ++ G+ + G+   A E+F EM   K      + +       G + +        R L E
Sbjct: 205 SMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTE 264

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
           +     +   N+MI  Y++ G +  A+++F EM  R+V S++ +I G+A HG+  EA+ L
Sbjct: 265 NQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINL 324

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
              M   G+ PD ++ +G ++AC+  G L+ G+ +   +K   I         ++D+  +
Sbjct: 325 MSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDH----YACMVDLLGR 380

Query: 355 CGSLDEARRIFYSM 368
            G L++A+R    M
Sbjct: 381 VGELEDAKRTMERM 394



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 6/213 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM-KRKGLLVDNYTYPFVL 119
           ++D A +LFN +   N    N+MI GY Q+     A+  +  M   K L  D  T   V+
Sbjct: 184 DLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVI 243

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
            ACG L  L  G  +   + +      +   N +I MYS+CG M  A+ VF+    +D+V
Sbjct: 244 SACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVV 303

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEH 235
           S+N ++ GF   G   +A  +   M     + D +++ I +       G +   R +FE 
Sbjct: 304 SYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTF-IGVLTACSHAGLLEEGRKVFES 362

Query: 236 MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
           +    +  +  M+D   ++G+L  A++    MP
Sbjct: 363 IKDPAIDHYACMVDLLGRVGELEDAKRTMERMP 395



 Score = 44.3 bits (103), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 8/111 (7%)

Query: 32  LAQLTTNDLITEPFTLSQLLMSLTSPNTL--------NMDQAERLFNQIYQPNTYMHNTM 83
           L  L   + +    T +Q+ +S++  N +        +M+ A+R+F ++   +   +NT+
Sbjct: 249 LGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTL 308

Query: 84  IRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           I G+    +  +A++    MK  G+  D  T+  VL AC     L EG ++
Sbjct: 309 ISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKV 359


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 200/578 (34%), Positives = 330/578 (57%), Gaps = 47/578 (8%)

Query: 45  FTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMK 104
           F+ + +L  LT    L  D+A  +F  + +P+    N M+ G+ Q    ++AL F+V+M 
Sbjct: 86  FSYNAVLSVLTKFGKL--DEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMH 143

Query: 105 RKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG 164
            +  +++ Y++   L AC  L  L  G +IH  + K  +L DV++ + L+ MYSKCG + 
Sbjct: 144 SEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVA 203

Query: 165 CARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVF----DEMPQKDAI---------- 210
           CA+  F+G  ++++VSWN ++  + + G  GKA EVF    D   + D I          
Sbjct: 204 CAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACA 263

Query: 211 SWSIMIDGYR---------KKKGD----------------ISSARILFEHMPIKDLISWN 245
           SWS + +G +         K + D                ++ AR++F+ MP+++++S  
Sbjct: 264 SWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSET 323

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           SM+ GYA+   + AA+ +F+ M E+NV SW+ +I GY Q+G  +EA+ LF  +  + + P
Sbjct: 324 SMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWP 383

Query: 306 DVISVMGAISACAQVGALDLGKWIHV------FMKRSRITMDMIVQTALIDMYMKCGSLD 359
              +    ++ACA +  L LG+  H       F  +S    D+ V  +LIDMYMKCG ++
Sbjct: 384 THYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVE 443

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           +   +F  M +++V+S+N MI G   NG+G  AL+ F +M   G   D +  +GVL ACS
Sbjct: 444 DGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACS 503

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           H+GL  EG R F SM+   G+ P  +H++C+VDLL RAG L++A +++++MPM+P+  +W
Sbjct: 504 HAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVW 563

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
           G+LL AC+ H N+ L + V E L+E+   + G YVLLSN+YA+ G W+  +R+RK MR+R
Sbjct: 564 GSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQR 623

Query: 540 KIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
            + K+ G S IEI   +  F+  +      +++ LV++
Sbjct: 624 GVIKQPGCSWIEIQSRVHVFMVKDKRHPLKKDIHLVLK 661



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 127/505 (25%), Positives = 225/505 (44%), Gaps = 77/505 (15%)

Query: 109 LVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARS 168
            +D+  +  +L +C      ++   IH  ++K  F  ++F+ N L+  Y KCG+   AR 
Sbjct: 16  FLDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARK 75

Query: 169 VFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS 228
           VF+    ++  S+N VL    + G++ +A  VF  MP+ D  SW+ M+ G+ +      +
Sbjct: 76  VFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEA 135

Query: 229 ARILFE--------------------------HMPIK------------DLISWNSMIDG 250
            R   +                          +M I+            D+   ++++D 
Sbjct: 136 LRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDM 195

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           Y+K G +  AQ+ F+ M  RN+ SW+ +I  Y Q+G   +AL +F  M+  GV PD I++
Sbjct: 196 YSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITL 255

Query: 311 MGAISACAQVGALDLGKWIHV-FMKRSRITMDMIVQTALIDMYMKCGSLDEARRI----- 364
              +SACA   A+  G  IH   +KR +   D+++  AL+DMY KC  ++EAR +     
Sbjct: 256 ASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMP 315

Query: 365 --------------------------FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
                                     F +M +KNV+S+N +IAG   NG  EEA++ F  
Sbjct: 316 LRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLL 375

Query: 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRH-----CGIEPKLEHYSCLVDL 453
           ++ E I      F  +L AC++      G +    + +H      G E  +   + L+D+
Sbjct: 376 LKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDM 435

Query: 454 LSRAGELEQALNIVESMPMKPNLALWGTLLLA-CRNHQNVTLAEVVVEGLVELKADDCGL 512
             + G +E    + E M ++ ++  W  +++   +N       E+  + LV  +  D   
Sbjct: 436 YMKCGMVEDGCLVFERM-VERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVT 494

Query: 513 YVLLSNIYADAGMWEHALRIRKMMR 537
            + + +  + AG+ E   R    MR
Sbjct: 495 MIGVLSACSHAGLVEEGRRYFHSMR 519


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 211/576 (36%), Positives = 321/576 (55%), Gaps = 20/576 (3%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIY- 73
           L+SLL+   +T  + QI  Q T + +      LSQ      S +  +   +  +F+ I  
Sbjct: 24  LLSLLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQ------SISLKDFTYSTLIFSHITP 77

Query: 74  QPNTYMHNTMIRGYTQSSNPQK-ALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
            PN Y  N M+R  T + +     L  Y  MK   +  +N+T+PFV  AC  L  +    
Sbjct: 78  HPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMAR 137

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
             H EV K+G   D   VN ++ MY +CG  G AR VF+    KDLVSWN +L G+ + G
Sbjct: 138 LAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLG 197

Query: 193 EMGKAREVFDEMPQKDAISWSIM----IDGYRKKKGDISSAR-----ILFEHMPIKDLIS 243
              +A EVF  + ++       M    + G   + GD+   R     ++   M +   I 
Sbjct: 198 FAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIG 257

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
            +++I  Y+K G+LV+++++F+ MP R+  +W+  I  YAQ+G   EA+ LF  M   GV
Sbjct: 258 -SALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGV 316

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
            P+ +++   +SACA +GALDLGK +  +     +  D+ V TALIDMY KCGSL+ A+R
Sbjct: 317 DPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQR 376

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG--IPKDDLIFLGVLIACSHS 421
           +F  M +KN  S+N MI+ L  +G  +EAL  F +M  EG     +D+ F+ +L AC H+
Sbjct: 377 VFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHA 436

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           GL  EGYR+F  M    G+ PK+EHYSC+VDLLSRAG L +A +++E MP KP+    G 
Sbjct: 437 GLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGA 496

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           L  AC+  +NV + E V++ L+EL   + G Y++ S IY +  MW+ A R+R +MR+  +
Sbjct: 497 LHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMRENGV 556

Query: 542 KKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
            K  G S IE+   ++EF+SG+   + S ++  +I 
Sbjct: 557 TKTPGCSWIEVGNQLREFLSGDGLTLDSIDVRNIID 592


>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
 gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
          Length = 427

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 177/409 (43%), Positives = 270/409 (66%), Gaps = 4/409 (0%)

Query: 169 VFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS 228
           +F+  + +D+VSWN ++RG ++ GE+ +A ++FDEMP KDA+SW+ ++DGY  K G+++ 
Sbjct: 3   LFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGY-VKAGEMNK 61

Query: 229 ARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNP 288
           A  LFE MP ++++SW++M+ GY K GD+  A+ LF+ MP +N+ SW+I++ GYA  G  
Sbjct: 62  AFGLFESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLA 121

Query: 289 KEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTAL 348
           K+A+  F +M   G++PD  +V+  +++CA+ G L LGK +H  ++R R    + V  AL
Sbjct: 122 KDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNAL 181

Query: 349 IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD 408
           +DMY KCG +D A  +F  M+KK+++S+N M+ GL M+G GE+AL+ F+ M  EG   D 
Sbjct: 182 VDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDK 241

Query: 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468
           +  + VL AC H+G   EG R F +M+R  GI P +EHY C+VDLL R G L++A  +V+
Sbjct: 242 VTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQ 301

Query: 469 SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528
           SMP++PN+ +WGTLL ACR H  V LAE V++ L +L+  D G Y LLSNI+A AG W  
Sbjct: 302 SMPVEPNVVIWGTLLGACRMHNAVGLAEEVLDCLFKLEPSDPGNYSLLSNIFASAGDWSS 361

Query: 529 ALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
              +R  M+   I+K +G S IE+D  + EF    +FD    + + + Q
Sbjct: 362 VANVRLQMKNFGIQKPSGASSIEVDDEVHEFT---VFDKSHPKSDKIYQ 407



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 159/378 (42%), Gaps = 84/378 (22%)

Query: 67  RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
           RLF  + + +    N+MIRG  +     +A   +  M  K                    
Sbjct: 2   RLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMK-------------------- 41

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
                              D    N ++  Y K G M  A  +FE    +++VSW+ ++ 
Sbjct: 42  -------------------DAVSWNTILDGYVKAGEMNKAFGLFESMPERNVVSWSTMVS 82

Query: 187 GFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMP--------- 237
           G+ + G+M  AR +FD MP K+ +SW+I++ GY   KG    A   FE M          
Sbjct: 83  GYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGY-AVKGLAKDAIRSFEQMEEAGLKPDDG 141

Query: 238 --IKDLISW----------------------------NSMIDGYAKIGDLVAAQQLFNEM 267
             I  L S                             N+++D YAK G +  A  +FN M
Sbjct: 142 TVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGM 201

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK 327
            ++++ SW+ M+ G A HG+ ++AL LF  M  +G RPD ++++  + AC   G +D G 
Sbjct: 202 SKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGI 261

Query: 328 WIHVFMKRSRITMDMIVQTA-LIDMYMKCGSLDEARRIFYSM-TKKNVISYNVMIAGLGM 385
                M+R    +  I     ++D+  + G L EA R+  SM  + NV+ +  ++    M
Sbjct: 262 RYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGTLLGACRM 321

Query: 386 N---GFGEEALKCFAQME 400
           +   G  EE L C  ++E
Sbjct: 322 HNAVGLAEEVLDCLFKLE 339



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 122/238 (51%), Gaps = 18/238 (7%)

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
           +LF  M ER+V SW+ MI G  + G   EA  LF EM  +    D +S    +    + G
Sbjct: 2   RLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMK----DAVSWNTILDGYVKAG 57

Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
             ++ K   +F   S    +++  + ++  Y K G ++ AR +F  M  KN++S+ ++++
Sbjct: 58  --EMNKAFGLF--ESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVS 113

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR---HC 438
           G  + G  ++A++ F QME  G+  DD   + +L +C+ SGL   G R+  S++R    C
Sbjct: 114 GYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKC 173

Query: 439 GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL--LACRNHQNVTL 494
            +       + LVD+ ++ G++++AL++   M  K +L  W  +L  LA   H    L
Sbjct: 174 SVNVS----NALVDMYAKCGQVDRALSVFNGMS-KKDLVSWNCMLQGLAMHGHGEKAL 226



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 108/246 (43%), Gaps = 33/246 (13%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +M+ A  LF+++   N      ++ GY      + A+  +  M+  GL  D+ T   +L 
Sbjct: 89  DMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILA 148

Query: 121 ACGV--LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDL 178
           +C    L+GL  G  +H  + ++ + C V V N L+ MY+KCG +  A SVF G   KDL
Sbjct: 149 SCAESGLLGL--GKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDL 206

Query: 179 VSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK-------------GD 225
           VSWN +L+G    G   KA ++F  M Q          +G+R  K             G 
Sbjct: 207 VSWNCMLQGLAMHGHGEKALQLFSIMRQ----------EGFRPDKVTLVAVLCACVHAGF 256

Query: 226 ISSARILFEHMP-----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMI 279
           +      F +M      +  +  +  M+D   + G L  A +L   MP E NV  W  ++
Sbjct: 257 VDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGTLL 316

Query: 280 DGYAQH 285
                H
Sbjct: 317 GACRMH 322


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 211/576 (36%), Positives = 321/576 (55%), Gaps = 20/576 (3%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIY- 73
           L+SLL+   +T  + QI  Q T + +      LSQ      S +  +   +  +F+ I  
Sbjct: 24  LLSLLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQ------SISLKDFTYSTLIFSHITP 77

Query: 74  QPNTYMHNTMIRGYTQSSNPQK-ALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
            PN Y  N M+R  T + +     L  Y  MK   +  +N+T+PFV  AC  L  +    
Sbjct: 78  HPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMAR 137

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
             H EV K+G   D   VN ++ MY +CG  G AR VF+    KDLVSWN +L G+ + G
Sbjct: 138 LAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLG 197

Query: 193 EMGKAREVFDEMPQKDAISWSIM----IDGYRKKKGDISSAR-----ILFEHMPIKDLIS 243
              +A EVF  + ++       M    + G   + GD+   R     ++   M +   I 
Sbjct: 198 FAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIG 257

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
            +++I  Y+K G+LV+++++F+ MP R+  +W+  I  YAQ+G   EA+ LF  M   GV
Sbjct: 258 -SALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGV 316

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
            P+ +++   +SACA +GALDLGK +  +     +  D+ V TALIDMY KCGSL+ A+R
Sbjct: 317 DPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQR 376

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG--IPKDDLIFLGVLIACSHS 421
           +F  M +KN  S+N MI+ L  +G  +EAL  F +M  EG     +D+ F+ +L AC H+
Sbjct: 377 VFNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHA 436

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           GL  EGYR+F  M    G+ PK+EHYSC+VDLLSRAG L +A +++E MP KP+    G 
Sbjct: 437 GLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGA 496

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           L  AC+  +NV + E V++ L+EL   + G Y++ S IY +  MW+ A R+R +MR+  +
Sbjct: 497 LHSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMRENGV 556

Query: 542 KKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
            K  G S IE+   ++EF+SG+   + S ++  +I 
Sbjct: 557 TKTPGCSWIEVGNQLREFLSGDGLTLDSIDVRNIID 592


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 201/570 (35%), Positives = 322/570 (56%), Gaps = 42/570 (7%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
            + AQ+  + L T+  TL +L+ S  S    ++  A +LF+QI QPN +M N +I+GY+ 
Sbjct: 54  HVHAQIILHGLATQVLTLGKLVSS--SVQLRDLRYAHKLFDQIPQPNKFMFNHLIKGYSN 111

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
           SS+P K+L  Y  M   G+L + +T PFVLKAC        G  +H +  K+G      V
Sbjct: 112 SSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACV 171

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK-- 207
            N ++ +Y  CG +  AR VF+    + LVSWN ++ G+ + G   +A  +F EM +   
Sbjct: 172 QNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGL 231

Query: 208 -------------------------------------DAISWSIMIDGYRKKKGDISSAR 230
                                                D+I  + ++D Y  K G++  A+
Sbjct: 232 EPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMY-AKCGNLKCAK 290

Query: 231 ILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
            +F+ M  KD++SW  MI+ YA  G +  A + FN+MP +NV SW+ +I  + Q G   E
Sbjct: 291 SVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAE 350

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
           A+ LF  M   GV  +  +++  +S+C+ +G L LGK  H ++  + IT+   +  A+ID
Sbjct: 351 AVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIID 410

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           MY KCG+L  A  +F+ M +KN +S+NV+I  L ++G+G+EA++ F +M+  G+  D++ 
Sbjct: 411 MYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEIT 470

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
           F G+L ACSHSGL   G   F+ M    GI P +EHY+C+VDLL R G L +A+++++ M
Sbjct: 471 FTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKM 530

Query: 471 PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530
           P+KP++ +W  LL ACR + N+ + + +++ L+EL   + GLYVLLSN+Y+++  W+   
Sbjct: 531 PVKPDVVVWSALLGACRTYGNLAIGKQIMKQLLELGRYNSGLYVLLSNMYSESQRWDDMK 590

Query: 531 RIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
            I K++ +  IKK    S IEIDG   +F+
Sbjct: 591 NIWKILDQNGIKKCRAISFIEIDGCCYQFM 620


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 209/632 (33%), Positives = 338/632 (53%), Gaps = 98/632 (15%)

Query: 26  THILQILAQLTTNDLITEPFTLSQLLMSLT----SPNTLNMDQAERLFNQIYQPNTYMHN 81
            H+ Q+ AQ+  N L    + ++ L+   T     P+  ++     LFN    PN ++  
Sbjct: 15  NHLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHL-----LFNSTLNPNVFVFT 69

Query: 82  TMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKM 141
           +M+R Y+   +  K +  Y  M+  G+  D + YP ++K+ G       G   H  V+K+
Sbjct: 70  SMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGT-----GGIGFHAHVLKL 124

Query: 142 GFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD------------------------ 177
           G   D FV N +I MY++ G +G AR VF+  EI D                        
Sbjct: 125 GHGSDAFVRNAVIDMYARLGPIGHARKVFD--EIPDYERKVADWNAMVSGYWKWESEGQA 182

Query: 178 -----------LVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDI 226
                      +++W  ++ G+ +  ++  AR  FD MP++  +SW+ M+ GY  + G  
Sbjct: 183 QWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGY-AQNGLA 241

Query: 227 SSARILFEHMPIK----DLISW-----------------------------------NSM 247
             A  LF+ M       D  +W                                    ++
Sbjct: 242 EEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTAL 301

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML-CQGVRPD 306
           +D YAK GDL +A++LFN MP RNV +W+ MI GYAQ+G    A+ LF+EM+  + + PD
Sbjct: 302 LDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPD 361

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
            ++++  ISAC  +GAL+LG W+  F+  ++I + +    A+I MY +CGS+++A+R+F 
Sbjct: 362 EVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQ 421

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            M  ++V+SYN +I+G   +G G EA+   + M+  GI  D + F+GVL ACSH+GL  E
Sbjct: 422 EMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEE 481

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G ++F+S+K     +P ++HY+C+VDLL R GELE A   +E MPM+P+  ++G+LL A 
Sbjct: 482 GRKVFESIK-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNAS 536

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           R H+ V L E+    L EL+ D+ G ++LLSNIYA AG W+   RIR+ M+K  +KK TG
Sbjct: 537 RIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTG 596

Query: 547 RSVIEIDGNIKEFVSGEIFDVQSEEL-ELVIQ 577
            S +E  G + +F+  +    +S+++ +L+I+
Sbjct: 597 WSWVEYGGKLHKFIVADRSHERSDDIYQLLIE 628


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 199/521 (38%), Positives = 310/521 (59%), Gaps = 9/521 (1%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A++LF+++   +    N+MI GY ++    + +  ++ M   G+ +D  T   V  AC  
Sbjct: 305 AQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACAN 364

Query: 125 LMGLVEGTEIHGEVVKMGFL-CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
           +  L+ G  +H   +K   L  +V   N L+ MYSKCG +  A  VFE  + K +VSW  
Sbjct: 365 IGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTS 424

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK---KGDISSARILFEHMPIKD 240
           ++ G+V  G    A ++FDEM  +  +     +          G++ S +I+ +++   +
Sbjct: 425 MITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENN 484

Query: 241 LIS----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
           L +     N++ D YAK G +  A  +F+ M +++V SW+ MI GY ++  P EAL LF 
Sbjct: 485 LETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFA 544

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
           EM  +  +PD  +V   + ACA + ALD G+ IH +  R+  + D  V  A++DMY+KCG
Sbjct: 545 EMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCG 603

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
            L  AR +F  +  K+++S+ VMIAG GM+G+G EA+  F QM   GI  D++ F+ +L 
Sbjct: 604 LLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILY 663

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
           ACSHSGL  EG++IF  MK+ C IEP LEHY+C+VDLL+R G L +A   +++MP+KP+ 
Sbjct: 664 ACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDA 723

Query: 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
            +WG LL  CR H +V LAE V E + EL+ ++ G YVLL+NIYA+A  WE   ++RK +
Sbjct: 724 TIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKI 783

Query: 537 RKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
            +R +KK  G S IEI G I  FV+G+    Q++++EL+++
Sbjct: 784 GQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLK 824



 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 130/431 (30%), Positives = 226/431 (52%), Gaps = 11/431 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++ +   +F+++ +   ++ N MI  Y+ S N  ++++ +  M   G+  ++YT+  +LK
Sbjct: 200 DLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILK 259

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
               +  + EG ++HG + K+GF     VVN LI  Y     + CA+ +F+    +D++S
Sbjct: 260 CFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVIS 319

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDA-ISWSIMIDGYR--KKKGDISSARILFEH-- 235
           WN ++ G+V+ G   +  E+F +M      I  + M++ +      G +   ++L  +  
Sbjct: 320 WNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSI 379

Query: 236 ---MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
                 +++   N+++D Y+K GDL +A ++F  M E+ V SW+ MI GY + G    A+
Sbjct: 380 KAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAI 439

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            LF EM  +GV PDV +V   ++ACA  G L  GK +H +++ + +  +  V  AL DMY
Sbjct: 440 KLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMY 499

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCGS+ +A  +F  M KK+VIS+N MI G   N    EAL  FA+M+ E  P D     
Sbjct: 500 AKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRESKP-DGTTVA 558

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            +L AC+      +G  I     R+   E K    + +VD+  + G L  A ++ + +P 
Sbjct: 559 CILPACASLAALDKGREIHGYALRNGYSEDKYVT-NAVVDMYVKCGLLVLARSLFDMIPN 617

Query: 473 KPNLALWGTLL 483
           K +L  W  ++
Sbjct: 618 K-DLVSWTVMI 627



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 190/385 (49%), Gaps = 24/385 (6%)

Query: 114 TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS 173
            Y  +L+ C     + +G  +   +   G + D  +   L+ MY KCG +   R VF+  
Sbjct: 152 AYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKL 211

Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ----KDAISWSIMIDGYRKKKGDISSA 229
               +  WNL++  +   G  G++  +F +M +     ++ ++S ++  +       + A
Sbjct: 212 SESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCF------AAVA 265

Query: 230 RILFEHMPIKDLI------SWNSMID---GYAKIGDLVAAQQ-LFNEMPERNVFSWSIMI 279
           R+  E   +  LI      S+N++++    +  +G  V   Q LF+E+ +R+V SW+ MI
Sbjct: 266 RVE-EGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMI 324

Query: 280 DGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF-MKRSRI 338
            GY ++G     + +F +ML  GV  D+ +++    ACA +G L LGK +H + +K + +
Sbjct: 325 SGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATL 384

Query: 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
             ++     L+DMY KCG L+ A R+F  M +K V+S+  MI G    G  + A+K F +
Sbjct: 385 DREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDE 444

Query: 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458
           M++ G+  D      +L AC+ +G    G +I     R   +E      + L D+ ++ G
Sbjct: 445 MKSRGVVPDVYAVTSILNACAINGNLKSG-KIVHDYIRENNLETNSFVSNALTDMYAKCG 503

Query: 459 ELEQALNIVESMPMKPNLALWGTLL 483
            ++ A ++   M  K ++  W T++
Sbjct: 504 SMKDAHDVFSHMK-KKDVISWNTMI 527



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 156/330 (47%), Gaps = 31/330 (9%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A R+F ++ +       +MI GY +      A+  +  MK +G++ D Y    +L 
Sbjct: 403 DLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILN 462

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC +   L  G  +H  + +     + FV N L  MY+KCG M  A  VF   + KD++S
Sbjct: 463 ACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVIS 522

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKD------------------AISWSIMIDGYRKK 222
           WN ++ G+ +     +A  +F EM ++                   A+     I GY  +
Sbjct: 523 WNTMIGGYTKNSLPNEALTLFAEMQRESKPDGTTVACILPACASLAALDKGREIHGYALR 582

Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
            G              +D    N+++D Y K G LV A+ LF+ +P +++ SW++MI GY
Sbjct: 583 NG------------YSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGY 630

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMD 341
             HG   EA+  F +M   G+ PD +S +  + AC+  G LD G K  ++  K  +I  +
Sbjct: 631 GMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPN 690

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
           +     ++D+  + G+L +A +   +M  K
Sbjct: 691 LEHYACMVDLLARTGNLVKAHKFIKAMPIK 720


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 220/578 (38%), Positives = 306/578 (52%), Gaps = 77/578 (13%)

Query: 5   AAAKFSLKN--PLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNM 62
             + FSL +    V LL+   + T I QI AQ+ T+ L      L  L+ S       N+
Sbjct: 46  GTSSFSLPSHSTFVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYI--GCRNL 103

Query: 63  DQAERLFNQIYQ-PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKG--LLVDNYTYPFVL 119
             A  +F+Q    P T + N MI+ Y+++ + Q++L  +  M   G     D YT+ FV 
Sbjct: 104 SFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVF 163

Query: 120 KACG---VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK 176
            AC     L G   G  +HG VVK G+  D+FV N L+ MY          S+F      
Sbjct: 164 TACSRHPTLRGY--GENVHGMVVKDGYESDIFVGNSLVNMY----------SIFS----- 206

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
                            M  A+ VFDEM                                
Sbjct: 207 ----------------RMVDAKRVFDEM-------------------------------- 218

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
           P +D+I+W S++ GYA  G+LV A++LF+ MP RN  SW++M+ GY  H    EAL  F 
Sbjct: 219 PQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFN 278

Query: 297 EMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
           +MLC   V+P+   ++  +SACA +GALD GKWIHV++ ++RI +   + TALIDMY KC
Sbjct: 279 DMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKC 338

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
           G +D ARR+F  + K++++++  MI+GL M+G G E L  F++M  EG   DD+  LGVL
Sbjct: 339 GRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVL 398

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
             CSHSGL  EG  IF  M    GI PKLEHY CL+DLL RAG LE A   ++SMPM+P+
Sbjct: 399 NGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPD 458

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVEL-KADDCGLYVLLSNIYADAGMWEHALRIRK 534
           +  W  LL ACR H +V L E ++  + EL      G YVLLSN+YA  G WE   ++RK
Sbjct: 459 VVAWRALLSACRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRK 518

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            M +R  +   G S IEIDG + EF++ +    +  E+
Sbjct: 519 AMSQRGSEGCPGCSWIEIDGVVHEFLAADKLHPRISEI 556


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 187/506 (36%), Positives = 285/506 (56%), Gaps = 68/506 (13%)

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM-----KRKGLLVDNYTYPF 117
           + A  LF  +  PN +++N MIR Y  +     A++ Y  M         +  D +T+PF
Sbjct: 63  EYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPF 122

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           V+K+C  LM    G ++HG V K G   +  V N L+ MY                    
Sbjct: 123 VVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMY-------------------- 162

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMP 237
                      V+C  +  A  VF+EM ++                              
Sbjct: 163 -----------VKCDSLDDAHRVFEEMTER------------------------------ 181

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
             D +SWN++I G+ ++G +  A+ +F EM ++ +FSW+ ++ GYA+ G   +AL  FR 
Sbjct: 182 --DAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRR 239

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
           M   G+ PD IS++  +  CAQ+GAL+LGKWIH++  ++    ++ V  ALI+MY KCGS
Sbjct: 240 MQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGS 299

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
           +D+ RR+F  M +++VIS++ MI GL  +G   EA++ F +M+   I    + F+G+L A
Sbjct: 300 IDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTA 359

Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
           C+H+GL  EG R F+SMKR   IEP +EHY CLV+LL  +G L+QAL +V+ MP KP+  
Sbjct: 360 CAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSP 419

Query: 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537
           +WG+LL +CR+H N+ +A + +E L+EL+  D G YVLLSN+YAD G W+   R+RK+MR
Sbjct: 420 IWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMR 479

Query: 538 KRKIKKETGRSVIEIDGNIKEFVSGE 563
            + +KK  G S IE+D  ++EF SG+
Sbjct: 480 SKSMKKTPGCSSIEVDNMVQEFASGD 505



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 152/329 (46%), Gaps = 39/329 (11%)

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC-----Q 301
           M+D     G+   A  LF  + + N F ++ MI  Y  +     A+ ++++ML       
Sbjct: 52  MVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGEN 111

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
            + PD  +    + +CA +   DLGK +H  + +     + +V+ +L++MY+KC SLD+A
Sbjct: 112 PIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDA 171

Query: 362 RRIFYSMTKKNVISYNVMIAG---LG-----------------------MNGFGE----- 390
            R+F  MT+++ +S+N +I+G   LG                       ++G+       
Sbjct: 172 HRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYA 231

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
           +AL+ F +M+  GI  D++  + VL  C+  G A E  +         G    +   + L
Sbjct: 232 DALEFFRRMQMVGIEPDEISLVSVLPDCAQLG-ALELGKWIHIYADKAGFLRNICVCNAL 290

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           +++ ++ G ++Q   + + M  + ++  W T+++   NH     A  + + + + K +  
Sbjct: 291 IEMYAKCGSIDQGRRLFDQMKER-DVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPS 349

Query: 511 GL-YVLLSNIYADAGMWEHALRIRKMMRK 538
            + +V L    A AG+    LR  + M++
Sbjct: 350 IITFVGLLTACAHAGLLNEGLRYFESMKR 378



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 110/249 (44%), Gaps = 11/249 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            M +A  +F ++     +    ++ GY +      AL F+  M+  G+  D  +   VL 
Sbjct: 198 QMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLP 257

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C  L  L  G  IH    K GFL ++ V N LI MY+KCG +   R +F+  + +D++S
Sbjct: 258 DCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVIS 317

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIM----IDGYRKKKGDISSARILFEHM 236
           W+ ++ G    G   +A E+F EM QK  I  SI+    +       G ++     FE M
Sbjct: 318 WSTMIVGLANHGRAREAIELFQEM-QKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESM 376

Query: 237 PIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQHGNPKE 290
                I      +  +++     G L  A +L  +MP + +   W  ++     HGN K 
Sbjct: 377 KRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKI 436

Query: 291 ALYLFREML 299
           A+     +L
Sbjct: 437 AVIAMEHLL 445


>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 203/555 (36%), Positives = 301/555 (54%), Gaps = 77/555 (13%)

Query: 32  LAQLTTNDLITEPFTLSQLLMSLTS-----PNTLNMDQAERLFNQIYQPNTYMHNTMIRG 86
           +A+L  N  +   + LSQ    +T          +MD A  LF ++  PN Y++N MIR 
Sbjct: 1   MAELKKNHALVIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRA 60

Query: 87  YTQSSNPQKALSFYVNMKRKG---------LLVDNYTYPFVLKACGVLMGLVEGTEIHGE 137
            T +S     + FY  M R+          +L D +T+PFV+KAC  L     G ++H +
Sbjct: 61  CTHNSMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQ 120

Query: 138 VVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKA 197
             K G    +   N LI MY+K                               C  +  A
Sbjct: 121 FFKFGKKSHLITENALIDMYTK-------------------------------CDNLLDA 149

Query: 198 REVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDL 257
             +FDEM ++ AI                                SWN +I G+ ++G +
Sbjct: 150 HNLFDEMHERGAI--------------------------------SWNGIISGHVRLGQM 177

Query: 258 VAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISAC 317
             A+ LF+EMP R + SW+ +I GY + G+  +AL +FREM   G+ PD  S++  + AC
Sbjct: 178 RRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPAC 237

Query: 318 AQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYN 377
           A++GAL+ GKWIH+F  R+ +     +  ALI+MY KCG +D+A ++F  M  ++VIS++
Sbjct: 238 AKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWS 297

Query: 378 VMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRH 437
            MI GL  +G   EA+  F +M+   I  + + F+G+L AC+H+G   EG   F +MK+ 
Sbjct: 298 TMIGGLANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKD 357

Query: 438 CGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEV 497
             IEP++EHY  LVDLL RAG L QAL+IVE MPMKP+  +WG+LL +CR H N+ +A +
Sbjct: 358 FHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIEVAVI 417

Query: 498 VVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIK 557
            +E L EL+ DD G YVLLSNIYAD G W+   R+RK++R +++KK  G S+IE++   +
Sbjct: 418 AMEHLEELEPDDTGNYVLLSNIYADLGKWDDVSRMRKLVRSKRMKKTPGCSLIEVNNVAQ 477

Query: 558 EFVSGEIFDVQSEEL 572
           EFVSG+     S+E+
Sbjct: 478 EFVSGDDSKPYSKEI 492


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 208/596 (34%), Positives = 325/596 (54%), Gaps = 80/596 (13%)

Query: 10  SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLF 69
           +L   L+SL++  K+   + QI AQ+  N +    F LS+++      +  ++  A  +F
Sbjct: 31  TLTEKLLSLIKQCKSKNLLKQIHAQMLINSIPKPNFLLSKII------DLKDLAYASLVF 84

Query: 70  NQIYQPNTYMHNTMIRGYTQSSNPQK-ALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           NQ+ +PN Y  N M+RG   +       +  Y  +K  GL  +N+TYPF+  ACG + GL
Sbjct: 85  NQLTKPNIYAFNVMLRGLATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGL 144

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
           V G   H  V K G   D +V + LI MY++CG                           
Sbjct: 145 VHGKIGHCLVFKAGLDGDEYVNHSLITMYARCG--------------------------- 177

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRK--------------------------- 221
               EMG AR+VFDEM  +D +SW+ MI GY K                           
Sbjct: 178 ----EMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLV 233

Query: 222 -------KKGDISSAR-----ILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269
                    GD+   R     +L + M +   +  +++ID Y K GDL++A+++F+ MP 
Sbjct: 234 SVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMG-SALIDMYGKCGDLISARRVFDSMPN 292

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329
           ++V +W+ +I GYAQ+G   EA+ LF  M   G  PD ++++  +SAC+ +GALDLGKW+
Sbjct: 293 KDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWV 352

Query: 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFG 389
                   +  D+ V +ALIDMY KCGSLD+A R+F SM  KN +S+N MI+ L  +G  
Sbjct: 353 ETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQA 412

Query: 390 EEALKCFAQMETEG--IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
           +EAL  F +M  +   +  +D+ F+GVL AC H+GL  EG ++F+SM    G+ PK+EHY
Sbjct: 413 QEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVPKVEHY 472

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
           SC+VDL +RAG L +A ++++ MP KP+  + G+LL AC+  +N  + E V++  +E++ 
Sbjct: 473 SCMVDLCARAGLLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERVIQLFLEMEL 532

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
            + G YV+ S IYA+   W+ + ++R +MR+  + K  G S I+I  ++ EF +G+
Sbjct: 533 SNSGNYVISSKIYANMRRWDDSAKMRVLMRQCGVSKTPGCSWIDIGAHVHEFHAGD 588


>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
          Length = 613

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 194/510 (38%), Positives = 299/510 (58%), Gaps = 49/510 (9%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           Q+ AQ+     I +P   ++LL      +  ++D A ++F  +++PN + +NT+IR  ++
Sbjct: 6   QLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIRALSE 65

Query: 90  SSNPQKALSFYVNMKRKGLLVDN-YTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF 148
           S++P  AL  ++ M     +  N +T+P V KACG    L EG ++HG  VK G   D F
Sbjct: 66  SNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEF 125

Query: 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKD 208
           VV+ ++ MY  CG M  A  +F                           R VF +     
Sbjct: 126 VVSNVVRMYLSCGVMEDAHRLF--------------------------YRRVFVDG---- 155

Query: 209 AISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
                   DG R KK  +             D++ WN MIDGY +IG+L  A+ LF+EMP
Sbjct: 156 -------CDGIRDKKRRVDG-----------DVVLWNVMIDGYVRIGELEVARNLFDEMP 197

Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328
           +R+V SW++MI GYAQ G+ KEA+ +FREM    V P+ ++++  + A +++GAL+LGKW
Sbjct: 198 QRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKW 257

Query: 329 IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
           +H++  R+ I +D ++ +ALIDMY KCGS+++A ++F  + K+NV++++ +IAGL M+G 
Sbjct: 258 VHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGR 317

Query: 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
            ++ L  F  ME  G+   D+ ++G+L ACSH+GL  EG   F  M R  G+EP++EHY 
Sbjct: 318 AKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYG 377

Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508
           C+VDLL RAG LE++  ++ +MP+KP+  +W  LL AC+ H NV + + V E L+EL   
Sbjct: 378 CMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPH 437

Query: 509 DCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
           D G YV LSNIYA  G WE   ++R MM++
Sbjct: 438 DSGSYVALSNIYASLGNWEGVAKVRLMMKE 467


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 199/566 (35%), Positives = 321/566 (56%), Gaps = 47/566 (8%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D++  LF+ + + +    N+MI G+ Q    ++AL ++V M R   ++++Y++   L A
Sbjct: 106 VDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSA 165

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G +IHG + K  +  DVF+ +GLI  YSKCG +GCAR VF+G E K++VSW
Sbjct: 166 CSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSW 225

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQ----------------------------------- 206
           N ++  + + G   +A E F  M +                                   
Sbjct: 226 NCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVK 285

Query: 207 -----KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQ 261
                 D I  + ++D Y  K G ++ AR +F+ MP+++ +S  +M+ GYAK   + AA+
Sbjct: 286 SDKFRNDLILGNALVDMY-AKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAAR 344

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
            +F  + ++++ SW+ +I GY Q+G  +EAL LFR +  + V P   +    ++A A + 
Sbjct: 345 SMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLA 404

Query: 322 ALDLGKWIHV------FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS 375
            L+LG+  H       F  +S    D+ V  +LIDMYMKCGS++E  R+F +M +K+ +S
Sbjct: 405 DLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVS 464

Query: 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMK 435
           +N MI G   NG+G EAL+ F +M   G   D +  +G L ACSH+GL  EG R F SM 
Sbjct: 465 WNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMT 524

Query: 436 RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLA 495
           +  G+ P  +HY+C+VDLL RAG LE+A +++ESMP +P+  +W +LL AC+ H+N+TL 
Sbjct: 525 KEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLG 584

Query: 496 EVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGN 555
           + V E + E+     G YVLL+N+Y++ G W  A+ +RK+MR+R + K+ G S I+I  N
Sbjct: 585 KYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDIQSN 644

Query: 556 IKEFVSGEIFDVQSEELELVIQSFVK 581
           +  F+  +    Q +E+  +++   K
Sbjct: 645 VHVFMVKDKRHPQKKEIYSILKLLTK 670



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 125/459 (27%), Positives = 209/459 (45%), Gaps = 88/459 (19%)

Query: 108 LLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCAR 167
              D+  +  +L  C  L    +   +HG +++  F  +VF+ N LI +Y KCG++  AR
Sbjct: 20  FFTDSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYAR 79

Query: 168 SVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK---- 223
            VF+    +++ S+N ++   +  G + ++  +F  MP+KD  SW+ MI G+ +      
Sbjct: 80  KVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEE 139

Query: 224 ---------------GDISSARILFEHMPIKDL-------------------ISWNSMID 249
                           D S    L     +KDL                      + +ID
Sbjct: 140 ALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLID 199

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
            Y+K G +  A+++F+ M E+NV SW+ +I  Y Q+G   EAL  F  M   G +PD ++
Sbjct: 200 FYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVT 259

Query: 310 VMGAISACAQVGALDLGKWIHV-FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           +   +SACA + A   G  IH   +K  +   D+I+  AL+DMY KCG ++EAR +F  M
Sbjct: 260 LASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRM 319

Query: 369 -------------------------------TKKNVISYNVMIAGLGMNGFGEEALKCFA 397
                                           +K+++S+N +IAG   NG  EEAL  F 
Sbjct: 320 PVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFR 379

Query: 398 QMETEGIPKDDLIFLGVLIAC-----------SHSGLATEGYRIFQSMKRHCGIEPKLEH 446
            ++ E +      F  +L A            +HS +   G+R FQS     G EP +  
Sbjct: 380 MLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFR-FQS-----GEEPDIFV 433

Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
            + L+D+  + G +E+ L + E+M  K +++ W T+++ 
Sbjct: 434 GNSLIDMYMKCGSVEEGLRVFENMVEKDHVS-WNTMIIG 471



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 119/259 (45%), Gaps = 19/259 (7%)

Query: 46  TLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKR 105
            +S+  M      + ++  A  +F  I Q +    N +I GYTQ+   ++AL  +  +KR
Sbjct: 324 AVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKR 383

Query: 106 KGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC------DVFVVNGLIGMYSK 159
           + +   +YT+  +L A   L  L  G + H  VVK GF        D+FV N LI MY K
Sbjct: 384 ESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMK 443

Query: 160 CGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY 219
           CG +     VFE    KD VSWN ++ G+ + G   +A E+F +M +       + + G 
Sbjct: 444 CGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGT 503

Query: 220 R---KKKGDISSARILF-----EH--MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269
                  G +   R  F     EH  +P+KD   +  M+D   + G L  A+ L   MP+
Sbjct: 504 LCACSHAGLVEEGRRYFFSMTKEHGLLPVKD--HYTCMVDLLGRAGCLEEAKDLIESMPK 561

Query: 270 R-NVFSWSIMIDGYAQHGN 287
           + +   WS ++     H N
Sbjct: 562 QPDAVVWSSLLSACKVHRN 580


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 207/591 (35%), Positives = 317/591 (53%), Gaps = 47/591 (7%)

Query: 27  HILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAER------LFNQIYQPNTYMH 80
           H+ QI AQ+  ++  T P   + LL  L          +        +F+QI  P+T+  
Sbjct: 31  HLKQIHAQILHSN--TTPENTNTLLSKLALSICTLSSSSSSLHYALSVFSQIPNPHTHFS 88

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKR-KGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVV 139
           N ++R  ++SS P+K +  Y N++      +D +++P +LKA   +     G EIHG   
Sbjct: 89  NQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNHGLEIHGLAS 148

Query: 140 KMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKARE 199
           K+GF+ D F+  GLI MY+ C  +  AR +F+     D V+WN+++ G+ + G    A  
Sbjct: 149 KLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALR 208

Query: 200 VFDEMPQKDAISWSIMI-------------------------DGYRKKK----------- 223
           +F++M   D    S+++                         +GY               
Sbjct: 209 LFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYA 268

Query: 224 --GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
             G +  AR +++ +  K LI   +M+ GYAK+G +  A+ +F++M ER++  WS MI G
Sbjct: 269 NCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISG 328

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
           YA+   P+EAL LF EML +   PD I+++  ISAC+ VGAL    WIH ++ RS     
Sbjct: 329 YAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRA 388

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
           + V  ALIDMY KCG+L +AR +F +M +KNVIS++ MI    M+G  + A+K F +M+ 
Sbjct: 389 LSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKE 448

Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
             I  + + F+GVL AC H+GL  EG ++F SM    GI P  EHY C+VDL  RA  L 
Sbjct: 449 VNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLR 508

Query: 462 QALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521
           +A+ ++E+MP  PN+ +WG+L+ AC+ H    L E   + L+EL+ D  G  V+LSNIYA
Sbjct: 509 KAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYA 568

Query: 522 DAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
               W     IRK M  + I KE   S IEI+  +  F+  + +  QS+E+
Sbjct: 569 KEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEI 619


>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
 gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
          Length = 655

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 214/610 (35%), Positives = 325/610 (53%), Gaps = 44/610 (7%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           + +PL+SLL+   +   +LQ+ A LT + L    F  S+LL      +   +  A  +  
Sbjct: 30  VTHPLLSLLESCASFRRLLQLQALLTVSGLAAHRFPASRLLAFCALSDPPRLAHAAAVLA 89

Query: 71  QIYQ-PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV 129
           Q  + PN YM  TM+RG+ ++  P  AL+ +  + R  L  D  T  F +KA        
Sbjct: 90  QCAEGPNAYMLATMMRGFLRAGKPAHALALFRRVLRDRLPADARTIVFAVKAATTSSSPA 149

Query: 130 EGTEIHGEVVKMGFLC-DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
           E   IH    K GF+   V V N L+ MY+    +  AR +F+    +D+VSW  ++ G+
Sbjct: 150 EA--IHCVAFKRGFIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGY 207

Query: 189 VECGEMGKAREVFDEM-------PQK-------------------DAISWSIMIDGYR-- 220
              G   +A  VF  M       P +                     +   ++  G R  
Sbjct: 208 ARGGLPDEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMS 267

Query: 221 -----------KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269
                       K G ++SA+ +F+ MPIKD+ SW SM+  YAK GDL  A +LF E+P 
Sbjct: 268 VNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPN 327

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329
           RN  SWS M+  Y+Q   P+EA+ +F +M+  GV P   +++  +SACAQ+G LD+G+ +
Sbjct: 328 RNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCL 387

Query: 330 H-VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
           +  ++   ++ + + +  A IDM+ KCG +  A R+F +M  KNV+S+N MI    ++G 
Sbjct: 388 YDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQ 447

Query: 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
            EEAL  F + +  GI  D++ ++GVL ACSHSGL +EG   F+ MK   GIEP+ EHY+
Sbjct: 448 SEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIEPRAEHYA 507

Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508
           C++DLL + G LE+A  +  SMP+  + A WG LL ACR H NV + +   + LV L   
Sbjct: 508 CMIDLLGKVGLLEEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLVGLDPS 567

Query: 509 DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQ 568
           D G+YVL+S IYA    W     IR +MR R +KK  G S IE+DG   EF++ ++    
Sbjct: 568 DSGIYVLMSQIYASKSKWGQVKMIRTVMRDRGVKKNPGCSSIEVDGKFHEFLAADVSHAH 627

Query: 569 SEELELVIQS 578
           SE++   +++
Sbjct: 628 SEDIYAALEN 637


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 199/574 (34%), Positives = 332/574 (57%), Gaps = 54/574 (9%)

Query: 9   FSLKNPLV--SLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAE 66
           FS + PL+        KT   + Q+ A       I +P T ++++    + ++ ++D A 
Sbjct: 14  FSPQPPLILSKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVI-KFCAFSSRDIDYAR 72

Query: 67  RLFNQIYQPNTYMHNTMIRGYTQSSNPQ---KALSFYVNMKRKGLLVDN-YTYPFVLKAC 122
            +F Q+ +PN +  NT++R   ++++     +AL  +  M   G +  N +T+P VLKAC
Sbjct: 73  AVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKAC 132

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
                L EG +IHG +VK GF  D FV++ L+ MY  C  M  A S+F     K++V ++
Sbjct: 133 ARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLF----CKNVVDFD 188

Query: 183 LVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLI 242
                       G  +   D+                RK+ G++               +
Sbjct: 189 ------------GSCQMELDK----------------RKQDGNV---------------V 205

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
            WN MIDG  ++GD+ +A+ LF+EMP R+V SW++MI GYAQ+G+  EA+ LF+EM    
Sbjct: 206 LWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSN 265

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           + P+ ++++  + A A++GAL+LGKWIH++  ++++ +D ++ +AL+DMY KCGS+D+A 
Sbjct: 266 IDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKAL 325

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
           ++F ++ K+N I+++ +I    M+G  E+A+  F  M   G+  +D+ ++G+L ACSH+G
Sbjct: 326 QVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAG 385

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
           L  EG   F  M +  G++P++EHY C+VDLL RAG LE+A  ++ +MP++P+  +W  L
Sbjct: 386 LVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKAL 445

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
           L AC+ H+N+ + E V E L+EL   D G YV LSN+YA  G WE   R+R  M+   I+
Sbjct: 446 LGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIR 505

Query: 543 KETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
           K+ G S IEI G I EF+  +    +++E++ ++
Sbjct: 506 KDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAML 539


>gi|345505224|gb|AEN99836.1| chlororespiratory reduction 4, partial [Lepidium virginicum]
          Length = 594

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 207/587 (35%), Positives = 328/587 (55%), Gaps = 47/587 (8%)

Query: 23  KTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAER-LFNQIY-------- 73
           KT+  + +I AQL T   I      ++++++  S    ++ +  R +F + Y        
Sbjct: 4   KTSDDVNKIHAQLITTGFIKNTNLTTRIVLAFASSRHQHLAEFARCVFEEHYVYSFPYGE 63

Query: 74  QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
             + ++ N +++ ++  ++P++AL  +  M   G+ VD ++   VLKAC  L  +  G +
Sbjct: 64  TEDPFLWNAVMKSHSHGTDPRRALLLFCLMLENGVSVDKFSSSLVLKACSRLGFVKGGMQ 123

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           IHG + K G   D+F+ N LI +Y KCG +G AR +F+    +D VS+N    G V+CG 
Sbjct: 124 IHGFLRKTGLWSDLFLQNCLIALYLKCGCLGFARQIFDRMPKRDSVSYNPXXEGXVKCGL 183

Query: 194 MGKAREVF----------------------------------DEMPQKDAISWSIMIDGY 219
           +  ARE+F                                   EMP+KD ISW+ +IDGY
Sbjct: 184 IESARELFXLXXXEXKNXXSXXCMXSGYAQTSDGLXIASKLFSEMPEKDLISWNSIIDGY 243

Query: 220 RKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMI 279
             K G    A+ L++ MP +D+I+W +MIDGY K+G +  A+ L + +P R+V +++ M+
Sbjct: 244 -VKHGRXEDAKDLYDVMPRRDVITWATMIDGYVKLGFVHQAKTLLDXIPHRDVVAYNSMM 302

Query: 280 DGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338
            GY Q+    EAL LF +M  +  + PD  +++  +SA AQ+G L     +++++ + + 
Sbjct: 303 AGYVQNKYHMEALELFGDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDMYLYVVKKQF 362

Query: 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
            +   +  +LIDMY KCGS+  A  +F  +  K +  +N +I GL ++G G  A     Q
Sbjct: 363 FLGGKLWVSLIDMYSKCGSIQHAMLVFEGLENKTIDHWNAIIGGLAIHGRGGPAFNMLLQ 422

Query: 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458
           +E   I  DD+ F GVL ACSHSG   EG   F+ M+R   IEP+L+HY C+VD+LSR+G
Sbjct: 423 IERSSIKPDDITFTGVLNACSHSGFVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSG 482

Query: 459 ELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD-DCGLYVLLS 517
            +E A N++E MP++PN  +W T L AC +H+   + E+V + L+ L+AD +   YVLLS
Sbjct: 483 SIELAKNLIEKMPIEPNDVIWRTFLTACSHHKEFEMGELVAKHLI-LQADYNPSSYVLLS 541

Query: 518 NIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEI 564
           N+YA  GMW+    +R MM++RKI K  G S IE+DG + EF    I
Sbjct: 542 NMYASFGMWKDVRGVRTMMKERKIPKIPGCSSIELDGRVHEFFVDSI 588


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 196/588 (33%), Positives = 323/588 (54%), Gaps = 35/588 (5%)

Query: 10  SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLF 69
           +L++ ++       T  H+ Q  + L T+ L    F LS +L S T     ++     LF
Sbjct: 6   TLRHSILCCFHKCGTFDHLKQTTSILITSGLAHHTFFLSDILRSATK----DLGYTLLLF 61

Query: 70  NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV 129
           +++  P  ++ NT+IRG++ SS PQ  L  Y  ++  G++ D +T+P +LKA   L    
Sbjct: 62  DRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN-E 120

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
              + +  +VK G   D FV N L+  ++ CG++ C+R +F  +  KD+VSW  ++ G +
Sbjct: 121 NPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCL 180

Query: 190 ECGEMGKAREVFDEMPQKDA-------------------ISWSIMIDGYRKKKGDISSAR 230
             G   +A E F EM                        + +   + G+  + G +    
Sbjct: 181 RNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRV---- 236

Query: 231 ILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
                  I D+   ++++D Y+K G    A ++FNEMP RN+ SW  +I GY Q    KE
Sbjct: 237 -------IWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKE 289

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
           AL +F+EM+ +G+ P+  +V  A++ACAQ+G+LD G+W+H ++ RS++ ++  + TAL+D
Sbjct: 290 ALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVD 349

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           MY KCG +DEA  +F  +  K+V  +  MI GL M G    +L  F+QM    +  + + 
Sbjct: 350 MYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVT 409

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
           FLGVL AC+H GL  EG  +F+ M     +EP ++HY C+VDLL RAG LE+A+  +ESM
Sbjct: 410 FLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESM 469

Query: 471 PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530
           PM+P   +WG L   C  H+   L E +   L++L+    G Y+LL+N+Y+    WE A 
Sbjct: 470 PMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAA 529

Query: 531 RIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQS 578
            +R++M+ + + K  G S IE++G I EF++ +    +S  + ++++S
Sbjct: 530 NVRRLMKGKGVDKSPGCSWIEVNGVIHEFIAFDKSHTESINVYMMLES 577


>gi|334186821|ref|NP_194007.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635615|sp|P0C8Q5.1|PP336_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g22760
 gi|332659255|gb|AEE84655.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 578

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 195/556 (35%), Positives = 308/556 (55%), Gaps = 36/556 (6%)

Query: 30  QILAQLTTNDL-ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYT 88
           Q+ AQL  N     EP  + Q L      +   +   +R+       +++    ++R  +
Sbjct: 21  QVHAQLVVNRYNHLEPILVHQTLHFTKEFSRNIVTYVKRILKGFNGHDSFSWGCLVRFLS 80

Query: 89  QSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF 148
           Q    ++ +  Y++M   G+   ++    VL+ACG +  +V+G  IH + +K G    V+
Sbjct: 81  QHRKFKETVDVYIDMHNSGIPPSSHAVTSVLRACGKMENMVDGKPIHAQALKNGLCGCVY 140

Query: 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKD 208
           V  GL+G+YS+ G++  A+  F+    K+ VSWN +L G++E GE+ +AR VFD++P+KD
Sbjct: 141 VQTGLVGLYSRLGYIELAKKAFDDIAEKNTVSWNSLLHGYLESGELDEARRVFDKIPEKD 200

Query: 209 AISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
           A+SW+++I  Y  KKGD+ +A  LF  MP+K   SWN +I GY    ++  A+  F+ MP
Sbjct: 201 AVSWNLIISSY-AKKGDMGNACSLFSAMPLKSPASWNILIGGYVNCREMKLARTYFDAMP 259

Query: 269 ERNVFSWSIMIDGYA-------------------------------QHGNPKEALYLFRE 297
           ++N  SW  MI GY                                Q+G PK+AL LF +
Sbjct: 260 QKNGVSWITMISGYTKLGDVQSAEELFRLMSKKDKLVYDAMIACYTQNGKPKDALKLFAQ 319

Query: 298 MLCQG--VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
           ML +   ++PD I++   +SA +Q+G    G W+  ++    I +D ++ T+LID+YMK 
Sbjct: 320 MLERNSYIQPDEITLSSVVSANSQLGNTSFGTWVESYITEHGIKIDDLLSTSLIDLYMKG 379

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
           G   +A ++F ++ KK+ +SY+ MI G G+NG   EA   F  M  + IP + + F G+L
Sbjct: 380 GDFAKAFKMFSNLNKKDTVSYSAMIMGCGINGMATEANSLFTAMIEKKIPPNVVTFTGLL 439

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
            A SHSGL  EGY+ F SMK H  +EP  +HY  +VD+L RAG LE+A  +++SMPM+PN
Sbjct: 440 SAYSHSGLVQEGYKCFNSMKDH-NLEPSADHYGIMVDMLGRAGRLEEAYELIKSMPMQPN 498

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535
             +WG LLLA   H NV   E+     V+L+ D  G    L+ IY+  G W+ A  +R  
Sbjct: 499 AGVWGALLLASGLHNNVEFGEIACSHCVKLETDPTGYLSHLAMIYSSVGRWDDARTVRDS 558

Query: 536 MRKRKIKKETGRSVIE 551
           ++++K+ K  G S +E
Sbjct: 559 IKEKKLCKTLGCSWVE 574


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 191/597 (31%), Positives = 336/597 (56%), Gaps = 46/597 (7%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           L+ LL  S     + QI A +    L   P  + +LL      N   +  A ++F+QI  
Sbjct: 5   LIDLLHCSLPINQLKQIQALIIIKYLSLTPLFIRRLL------NASFIQYARQVFDQIPH 58

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           P+  +H + I  Y++ S   +AL  +V+M +  + +  +T P + K+C  L+ +  G ++
Sbjct: 59  PDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQV 118

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           H  V++ GF   VF  N LI  Y+K   +G A  +F+G  +KD +++N ++  +   GE+
Sbjct: 119 HSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGEV 178

Query: 195 GKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMP----------------- 237
             ARE+FD+M  +  +SW+ MI  Y  + GD     I+F+ M                  
Sbjct: 179 LAARELFDKMRDRSIVSWNAMISCY-AQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSI 237

Query: 238 ------------IK----------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
                       IK          ++I   +M++ Y K G +   + +F+ M  R+V +W
Sbjct: 238 CAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTW 297

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
           S MI GYAQ+G   EAL LF  M    ++P+ ++++  +SACAQ+G+++ G+ I  +++ 
Sbjct: 298 SAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVES 357

Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
             +  ++ V +AL+ MY KCG++ +AR+IF  + +++ +++N MI GL +NGF E+A+  
Sbjct: 358 RGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIAL 417

Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           + +M+   +  +++ F+G++ AC+H+G    G   F+SM+    I P +EH++C+VDL  
Sbjct: 418 YNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFC 477

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515
           R+G L  A   +  M ++PN+ +WGTLL A R H NV LAE+  + L+EL+ D+ G YV+
Sbjct: 478 RSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVELAELAGKKLLELEPDNSGNYVI 537

Query: 516 LSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           LSNIYA AG W+ AL++RK+M+ ++++K    S +E++  + +F+ G+    +S+E+
Sbjct: 538 LSNIYASAGRWQEALKVRKLMKDKRVQKAAAYSWVEVEDRVHKFLVGDTSHPRSDEV 594


>gi|15240281|ref|NP_198573.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170664|sp|Q9FHR3.1|PP403_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g37570
 gi|9757967|dbj|BAB08303.1| unnamed protein product [Arabidopsis thaliana]
 gi|332006824|gb|AED94207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 550

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 200/538 (37%), Positives = 318/538 (59%), Gaps = 4/538 (0%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           L +L ++ K+  H+ QI A++    L  +   L  + +S +S ++ ++  +  +F ++  
Sbjct: 13  LETLFKLCKSEIHLNQIHARIIRKGLEQDQ-NLISIFISSSSSSSSSLSYSSSVFERVPS 71

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL-VDNYTYPFVLKACGVLMGLVEGTE 133
           P TY+ N +I+GY+      + +S  + M R GL   D YT+P V+K C     +  G+ 
Sbjct: 72  PGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVGSS 131

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           +HG V+++GF  DV V    +  Y KC  +  AR VF     ++ VSW  ++  +V+ GE
Sbjct: 132 VHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVAYVKSGE 191

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAK 253
           + +A+ +FD MP+++  SW+ ++DG   K GD+ +A+ LF+ MP +D+IS+ SMIDGYAK
Sbjct: 192 LEEAKSMFDLMPERNLGSWNALVDGL-VKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAK 250

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313
            GD+V+A+ LF E    +V +WS +I GYAQ+G P EA  +F EM  + V+PD   ++G 
Sbjct: 251 GGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGL 310

Query: 314 ISACAQVGALDLGKWIHVFM-KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
           +SAC+Q+G  +L + +  ++ +R        V  ALIDM  KCG +D A ++F  M +++
Sbjct: 311 MSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRD 370

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
           ++SY  M+ G+ ++G G EA++ F +M  EGI  D++ F  +L  C  S L  EG R F+
Sbjct: 371 LVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLRYFE 430

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV 492
            M++   I    +HYSC+V+LLSR G+L++A  +++SMP + + + WG+LL  C  H N 
Sbjct: 431 LMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNT 490

Query: 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
            +AEVV   L EL+    G YVLLSNIYA    W     +R  M +  I K  GRS I
Sbjct: 491 EIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKICGRSWI 548


>gi|22293716|dbj|BAC10060.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
          Length = 631

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 186/505 (36%), Positives = 286/505 (56%), Gaps = 40/505 (7%)

Query: 106 KGLLVDNYTYPFVLKACGVLMGLVEGTE-IHGEVVKMGFLCDVFVVNGLIGMYSKC---- 160
           +G+  + +T+ F+L+AC  L+GL      +HG++V+ GF  DVFV N L+ +Y +C    
Sbjct: 105 QGVPPNGFTFTFLLRACA-LLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGG 163

Query: 161 --------------------------------GHMGCARSVFEGSEIKDLVSWNLVLRGF 188
                                           G    A   FE    +++VSWN V+ GF
Sbjct: 164 GGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGF 223

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMI 248
              G+M  AR VFD MP ++A+SW++MI GY    GD+ +AR +F+ M  KD++SW +M+
Sbjct: 224 ARMGDMVTARAVFDRMPSRNAVSWNLMISGY-AMSGDVEAARSVFDRMDQKDVVSWTAMV 282

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDV 307
             YAKIGDL    +LF+ MP +N+ SW+ MI GY  +    EAL  F+ M+ +G  RPD 
Sbjct: 283 SAYAKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDE 342

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
            +++  +SACAQ+G+++   WI  F+ +S I + + +  ALIDM+ KCG +  A  IFY 
Sbjct: 343 ATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYK 402

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           M  + +I++  MI+G   NG   +AL  +  M  EG+  DD +F+  L AC+H GL  EG
Sbjct: 403 METRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEG 462

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
           + IF  M     I+P++EHY C+VDLL RAG L++A+  +ESMP++P++ +W TLL +C 
Sbjct: 463 WSIFNEMVERYNIQPRMEHYGCMVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLCSCV 522

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
            H N  L E V + + EL+  +    VL+SN  A  G W+  +  R  MR   I+K  G 
Sbjct: 523 AHGNAELIEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGIEKVPGS 582

Query: 548 SVIEIDGNIKEFVSGEIFDVQSEEL 572
           S I++   + EF++ +    + +E+
Sbjct: 583 SSIQVGSEVHEFLAKDTRHKRRKEI 607


>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1329

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 200/580 (34%), Positives = 327/580 (56%), Gaps = 40/580 (6%)

Query: 1    MKTLAAAKFSLKNPLVSLLQISK--TTTHILQ-ILAQLTTNDLITEPFTLSQLLMSLTSP 57
            ++ L     SL   L  L QI K  +T  +L+  LA +         + ++Q + + +S 
Sbjct: 766  LRLLRDCSTSLSPYLPILKQIIKQCSTPKLLESALAAMIKTSQTQNCYLMNQFITACSSF 825

Query: 58   NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF 117
            N L  D A     Q+ +PN +++N +I+G+   S+P ++L FYV M R  +   +YTY  
Sbjct: 826  NRL--DLAVSFMTQMQKPNVFVYNALIKGFVTCSHPIRSLEFYVRMLRDSVSPSSYTYSS 883

Query: 118  VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
            +++A     G  E  + H  + K GF   V +   LIG YS  G                
Sbjct: 884  LVQASAFASGFGESLQAH--IWKFGFGFHVQIQTTLIGFYSASG---------------- 925

Query: 178  LVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMP 237
                            + +AR+VFDEMP++D ++W+ M+  YR+   D+ SA  L   MP
Sbjct: 926  ---------------RIREARKVFDEMPERDDVTWTTMVSAYRQVL-DMDSANSLANQMP 969

Query: 238  IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
             K+  +WN +IDGY ++G+L  A+ LFN+MP +++ SW+ MI+GY+++   +EA+ +F +
Sbjct: 970  EKNEATWNCLIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKRYREAIAVFYK 1029

Query: 298  MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
            M+ +G+ PD +++   ISACA +G L++GK +H++  ++   +D+ + +AL+DMY KCGS
Sbjct: 1030 MMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQNGFVLDVYIGSALVDMYSKCGS 1089

Query: 358  LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
            L+ A  +F+++ KKN+  +N +I GL  +GF +EALK FA+ME E +  + + F+ V  A
Sbjct: 1090 LERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNTVTFVSVFTA 1149

Query: 418  CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
            C+H+GL  EG RI++SM     I   +EHY C+V L S+AG + +AL ++ SM  +PN  
Sbjct: 1150 CTHAGLVEEGRRIYRSMIDDYSIVSNVEHYGCMVHLFSKAGLIYEALELIGSMEFEPNAV 1209

Query: 478  LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537
            +WG LL  CR H+N+ +AE+    L+ L+  + G Y LL ++YA+   W     IR  MR
Sbjct: 1210 IWGALLDGCRIHKNLEIAEIAFNKLMILEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMR 1269

Query: 538  KRKIKKE-TGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
            +  I+K   G S I ID     F + +     S+E+ L++
Sbjct: 1270 ELGIEKICPGTSSIRIDKRDHLFAAADKSHSASDEVCLLL 1309


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  364 bits (935), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 204/559 (36%), Positives = 323/559 (57%), Gaps = 22/559 (3%)

Query: 27  HILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRG 86
           H+ Q+  QL  + L    F + + + +      +N   A + F ++ +P+  + N +I+G
Sbjct: 17  HLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNY--AHKAFREVSEPDILLWNAIIKG 74

Query: 87  YTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCD 146
           YTQ +     +  Y++M+   +  + +T+ +VLKACG       G +IHG+  K GF  +
Sbjct: 75  YTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSN 134

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
           VFV N L+ MY+K G +  AR VF+    + +VSW  ++ G+V+ G+  +A  VF EM Q
Sbjct: 135 VFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQ 194

Query: 207 ----KDAISWSIMIDGY---------RKKKGDISSARILFEHMPIKDLISWNSMIDGYAK 253
                D I+   ++  Y         +   G ++   + FE     D++   S+   YAK
Sbjct: 195 CNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFE----PDIVI--SLTTMYAK 248

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313
            G +  A+  FN M + N+  W+ MI GYA +G  +EA+ LFREM+ + +R D I++  A
Sbjct: 249 RGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSA 308

Query: 314 ISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNV 373
           + A AQVG+L+L +W+  ++ +S    D  V T LIDMY KCGS+  AR +F  +  K+V
Sbjct: 309 VLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDV 368

Query: 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433
           + ++VMI G G++G G+EA+  + +M+  G+  +D  F+G+L AC +SGL  EG+ +F  
Sbjct: 369 VLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHL 428

Query: 434 MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT 493
           M  H GIEP  +HYSC+VDLL RAG L QA + + SMP+KP +++WG LL AC+ H+ V 
Sbjct: 429 MPDH-GIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVR 487

Query: 494 LAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEID 553
           L E+  E L  L   + G YV LSN+YA A +W     +R MM ++ + K+ G S IEI+
Sbjct: 488 LGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEIN 547

Query: 554 GNIKEFVSGEIFDVQSEEL 572
           GN++ F  G+    +S+E+
Sbjct: 548 GNLETFQVGDRSHPKSKEI 566


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 204/559 (36%), Positives = 323/559 (57%), Gaps = 22/559 (3%)

Query: 27  HILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRG 86
           H+ Q+  QL  + L    F + + + +      +N   A + F ++ +P+  + N +I+G
Sbjct: 2   HLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNY--AHKAFREVSEPDILLWNAIIKG 59

Query: 87  YTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCD 146
           YTQ +     +  Y++M+   +  + +T+ +VLKACG       G +IHG+  K GF  +
Sbjct: 60  YTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSN 119

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
           VFV N L+ MY+K G +  AR VF+    + +VSW  ++ G+V+ G+  +A  VF EM Q
Sbjct: 120 VFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQ 179

Query: 207 ----KDAISWSIMIDGY---------RKKKGDISSARILFEHMPIKDLISWNSMIDGYAK 253
                D I+   ++  Y         +   G ++   + FE     D++   S+   YAK
Sbjct: 180 CNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFE----PDIVI--SLTTMYAK 233

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313
            G +  A+  FN M + N+  W+ MI GYA +G  +EA+ LFREM+ + +R D I++  A
Sbjct: 234 RGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSA 293

Query: 314 ISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNV 373
           + A AQVG+L+L +W+  ++ +S    D  V T LIDMY KCGS+  AR +F  +  K+V
Sbjct: 294 VLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDV 353

Query: 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433
           + ++VMI G G++G G+EA+  + +M+  G+  +D  F+G+L AC +SGL  EG+ +F  
Sbjct: 354 VLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHL 413

Query: 434 MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT 493
           M  H GIEP  +HYSC+VDLL RAG L QA + + SMP+KP +++WG LL AC+ H+ V 
Sbjct: 414 MPDH-GIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVR 472

Query: 494 LAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEID 553
           L E+  E L  L   + G YV LSN+YA A +W     +R MM ++ + K+ G S IEI+
Sbjct: 473 LGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEIN 532

Query: 554 GNIKEFVSGEIFDVQSEEL 572
           GN++ F  G+    +S+E+
Sbjct: 533 GNLETFQVGDRSHPKSKEI 551


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 187/493 (37%), Positives = 299/493 (60%), Gaps = 11/493 (2%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N +IR  +++S     + F   M   GL  D +T P VLKA  ++ G+ EG +IH   +K
Sbjct: 79  NAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIK 138

Query: 141 MGFL-CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKARE 199
            G +  +V+V N L+ +YS CG +   + VF+    +DLVSW  +++ F + G   +A E
Sbjct: 139 TGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVE 198

Query: 200 VFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHMP-----IKDLISWNSMIDG 250
            F EM     + D  +  +++       GD++  + +  ++        D+   N+++D 
Sbjct: 199 AFMEMCDLRLRADGRTLVVVLSAC-SNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDM 257

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           Y K  DL +A ++F+EMP +NV +W+ MI G A  G  +EAL  FR M  +GV+PD +++
Sbjct: 258 YLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTL 317

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
           +G +++CA +G L++GKW+H +M+R+ I  D  V  AL+DMY KCGS+DEA R+F SM +
Sbjct: 318 VGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKR 377

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           ++V SY  MI GL ++G    A + F++M   GI  +++ FLG+L+ACSH GL  EG + 
Sbjct: 378 RDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKY 437

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
           F  M     + P+ EHY C++DLL RAG +++A  I+  M ++P++   G LL ACR H 
Sbjct: 438 FFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHG 497

Query: 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           NV + E V++ L EL  D+ G Y+L++N+Y+    W+ AL+IRK M+ +K++K  G S+I
Sbjct: 498 NVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLI 557

Query: 551 EIDGNIKEFVSGE 563
           E+DG + EF  G+
Sbjct: 558 EVDGVVHEFRKGD 570


>gi|255548718|ref|XP_002515415.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545359|gb|EEF46864.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 507

 Score =  363 bits (933), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 191/486 (39%), Positives = 279/486 (57%), Gaps = 4/486 (0%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N +IR      N  +A+  Y+ ++  G   DNYT+P +LKA G +     G  +HG+ +K
Sbjct: 19  NEIIRKQMHMGNGAQAILTYLKVQELGFHADNYTFPILLKAAGRICASKIGFALHGQTIK 78

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
            GF    FV   L+ MY     +G A  VFE   +KDL++WN +L  +    +M  A  +
Sbjct: 79  TGFCAHAFVQTALVNMYGNLHCIGDAFKVFEIMPVKDLIAWNSMLDAYASNAQMDYASNL 138

Query: 201 FDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAA 260
           F+ MP KD  S++IMI GY   +G+   AR +F+ M ++D +SWNSMI  Y + GD+   
Sbjct: 139 FNSMPLKDISSFNIMISGY-STRGEAMLARSIFDSMEVRDFVSWNSMISAYIRAGDMEKG 197

Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
             LF EMP +N  +W+ MI G  Q  +    L LF EM      PD ++V   +S C  +
Sbjct: 198 LALFREMPVKNTVTWNTMITGCLQSEHFGMVLDLFEEMKTANYIPDYLTVTSVLSTCGHL 257

Query: 321 GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMI 380
           G+L  G  IH++   + +     V TALIDMY KCGS+++   +F     K++  +N +I
Sbjct: 258 GSLGTGIKIHIYAIDNGLVSSPHVTTALIDMYSKCGSIEQGLHVFCKSQVKDIYCWNALI 317

Query: 381 AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGI 440
           + L ++G G  ALK F +M    I  DD+ F+G++ ACSHSGL  EG ++F SM+   GI
Sbjct: 318 SALALHGHGYAALKVFGKMRKNHIQPDDITFIGIINACSHSGLVQEGCQLFVSMQEDFGI 377

Query: 441 EPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVE 500
            PKLEHY C+V+LL R+G L  AL ++E+MP +P  ++ G LL AC  +Q++   E V+E
Sbjct: 378 SPKLEHYGCMVNLLGRSGHLALALQVIETMPFEPGESILGALLSACIIYQDLETGERVIE 437

Query: 501 GLVELKAD--DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKE 558
            LV  KA     G  ++ SN+YA  G WE A R R+MM    I K  G SVIE+ G  ++
Sbjct: 438 -LVCSKAHYLSDGELMMFSNLYASCGNWEEANRWREMMNSTGIVKTAGYSVIEVSGRFQK 496

Query: 559 FVSGEI 564
           F++GE+
Sbjct: 497 FLAGEV 502



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 94/217 (43%), Gaps = 10/217 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +M++   LF ++   NT   NTMI G  QS +    L  +  MK    + D  T   VL 
Sbjct: 193 DMEKGLALFREMPVKNTVTWNTMITGCLQSEHFGMVLDLFEEMKTANYIPDYLTVTSVLS 252

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            CG L  L  G +IH   +  G +    V   LI MYSKCG +     VF  S++KD+  
Sbjct: 253 TCGHLGSLGTGIKIHIYAIDNGLVSSPHVTTALIDMYSKCGSIEQGLHVFCKSQVKDIYC 312

Query: 181 WNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           WN ++      G    A +VF +M     Q D I++  +I+      G +     LF  M
Sbjct: 313 WNALISALALHGHGYAALKVFGKMRKNHIQPDDITFIGIINAC-SHSGLVQEGCQLFVSM 371

Query: 237 PIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP 268
                IS     +  M++   + G L  A Q+   MP
Sbjct: 372 QEDFGISPKLEHYGCMVNLLGRSGHLALALQVIETMP 408



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 96/220 (43%), Gaps = 10/220 (4%)

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326
           +P   V  W+ +I      GN  +A+  + ++   G   D  +    + A  ++ A  +G
Sbjct: 10  LPSSEVKKWNEIIRKQMHMGNGAQAILTYLKVQELGFHADNYTFPILLKAAGRICASKIG 69

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
             +H    ++       VQTAL++MY     + +A ++F  M  K++I++N M+     N
Sbjct: 70  FALHGQTIKTGFCAHAFVQTALVNMYGNLHCIGDAFKVFEIMPVKDLIAWNSMLDAYASN 129

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
              + A   F  M  + I   +++  G     S  G A     IF SM+           
Sbjct: 130 AQMDYASNLFNSMPLKDISSFNIMISGY----STRGEAMLARSIFDSMEVR-----DFVS 180

Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           ++ ++    RAG++E+ L +   MP+K N   W T++  C
Sbjct: 181 WNSMISAYIRAGDMEKGLALFREMPVK-NTVTWNTMITGC 219


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 208/552 (37%), Positives = 301/552 (54%), Gaps = 67/552 (12%)

Query: 34  QLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNT-YMHNTMIRGYTQSSN 92
           QL  N L   P +L  ++       + ++D A  L  +   P T ++ NT IRG++++  
Sbjct: 10  QLIINGLTHPPPSLRPIISFSALDPSGDIDYALLLLLRTSTPPTVFLFNTTIRGFSRARR 69

Query: 93  PQKALS---FYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
           P   LS    +V M    L  +N+T+ F+ + C   +    G + HG V+K  F  DVFV
Sbjct: 70  PGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIKNSFEMDVFV 129

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA 209
            N +I  YS                                CG +  AR VFDE  + D 
Sbjct: 130 RNSIIRFYSV-------------------------------CGRLNDARWVFDESSELD- 157

Query: 210 ISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269
                                          ++SWNSMIDG  + G+++ A  LF++M E
Sbjct: 158 -------------------------------VVSWNSMIDGCIRNGNILEALSLFSKMTE 186

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329
           RN  SW++MI GYAQ+G PKEAL LFREM      P+   ++  +SAC+Q+GALD G W+
Sbjct: 187 RNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWV 246

Query: 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFG 389
           H ++ +  + +D I+  ALIDMY KCGS+D A + F +  K++V +Y   I+GL MNG  
Sbjct: 247 HCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCS 306

Query: 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449
           EEAL+ F QM+ EGI  D + ++ VL ACSH+G   +G+  F SM    GI P+L+HY+C
Sbjct: 307 EEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYAC 366

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509
           +VDLL RAG LE+A   V SMP+KP+  +WG LL ACR + N  + + V   LVE   + 
Sbjct: 367 MVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQNH 426

Query: 510 CGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQS 569
            G Y+LLSNIYA++   E A ++RK MR+RK+ +  G S+IE+ G + EF SG+    ++
Sbjct: 427 DGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHEFFSGDRSHEKT 486

Query: 570 EELELVIQSFVK 581
           EE+ L+ +  VK
Sbjct: 487 EEIYLMWEEIVK 498


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 200/592 (33%), Positives = 325/592 (54%), Gaps = 64/592 (10%)

Query: 1   MKTLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL 60
           +K+ A    S  + +++L  +     H+LQ    LTT  LI    +    L  L +P+ L
Sbjct: 4   LKSRALHHLSHTHKVLALPSLHHFYDHLLQCCTSLTTLKLIHSSLSTRGFL--LHTPHFL 61

Query: 61  -----------NMDQAERLFNQ--------IYQPNTYMHNTMIRGYTQSSNPQKALSFYV 101
                      ++  A  LF+            PN+++ NTM+R Y  +    +A+  Y+
Sbjct: 62  ARLIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYI 121

Query: 102 NMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCG 161
            M+R G+ V+N+TYPFVLK C   +G V G  +HG+VV+ GF  D+FV   L+ MY+KCG
Sbjct: 122 YMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCG 181

Query: 162 HMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK 221
                                          E+G A EVFD M  +D + W+ MI  Y +
Sbjct: 182 -------------------------------EIGDAHEVFDRMLIRDVVCWTAMITLYEQ 210

Query: 222 KKGDISSARILFEHMP----IKDLISWNSMIDGYAKIGD----LVAAQQLFNEMPERNVF 273
            +  +  A +LF  M     + D I+  S+     ++GD    +  A+ +F+ M ERN  
Sbjct: 211 AERPLK-ALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGI 269

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
           SW+ M+ GY Q+G P +AL LF +M      P+ ++ +  +SAC+ +G+  LG+ +H F+
Sbjct: 270 SWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFV 329

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS--MTKKNVISYNVMIAGLGMNGFGEE 391
             S++ +D  ++ A++DMYMKCG LD A  +F +  + +++V S+NV+I+G G++G G+E
Sbjct: 330 ISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKE 389

Query: 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
           AL+ F++M+ EG+  +D+ F  +L ACSH+GL  EG + F  M +   + P+++HY+C+V
Sbjct: 390 ALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTK-LSVRPEMKHYACMV 448

Query: 452 DLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511
           D+L RAG L +A  +++ +P +P+  +WG LLLACR H N  L E+    L +L+ +  G
Sbjct: 449 DMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTG 508

Query: 512 LYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
            YVL+SNIYA +  W+    +R+ M+ R +KK    SVIE    +  F + +
Sbjct: 509 YYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTAD 560


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 197/516 (38%), Positives = 300/516 (58%), Gaps = 28/516 (5%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A ++F+ + + +T + NTMI G++++S  + ++  +V+M   GL  D+ T   VL A   
Sbjct: 167 ARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAE 226

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L     G  I     K G   DV+V+ GLI +YSKCG     R +F+  +  DL+S+N +
Sbjct: 227 LQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAM 286

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS---ARILFEHMPIKDL 241
           + G+    E   A  +F E+          +  G R     +       + F H+ +  L
Sbjct: 287 ISGYTFNHETESAVTLFREL----------LASGQRVNSSTLVGLIPVYLPFNHLQLSRL 336

Query: 242 ISWNSMIDG--------------YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN 287
           I   S+  G              Y ++ ++  A+QLF+E PE+++ SW+ MI GY Q+G 
Sbjct: 337 IQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGL 396

Query: 288 PKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA 347
              A+ LF+EM+ Q + P+ ++V   +SACAQ+GAL +GKW+H  +K  R+  ++ V TA
Sbjct: 397 TDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTA 455

Query: 348 LIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407
           L+DMY KCGS+ EAR++F  M  KNV+++N MI G G++G G+EALK F +M   GIP  
Sbjct: 456 LVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPT 515

Query: 408 DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467
            + FL +L ACSHSGL +EG  IF SM  + G +P  EHY+C+VD+L RAG+L  AL  +
Sbjct: 516 GVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFI 575

Query: 468 ESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWE 527
           E MP++P  A+WG LL AC  H+N  +A V  + L +L  ++ G YVLLSNIY+    + 
Sbjct: 576 ERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFP 635

Query: 528 HALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
            A  +R++++KRK+ K  G ++IEID     F SG+
Sbjct: 636 KAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGD 671



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/480 (24%), Positives = 225/480 (46%), Gaps = 19/480 (3%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
            ++LL  + T + +LQI AQL  + +  +  ++++L         +      +LFN++ +
Sbjct: 17  FLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVA--HVRQLFNKVSK 74

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKR-KGLLVDNYTYPFVLKACGVLMGLVEGTE 133
           P+ ++ N +IRG++ +  P+ ++  Y ++++   L  DN+TY F + A   L     G  
Sbjct: 75  PDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVL 134

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           +H   +  G   ++FV + ++ +Y K      AR VF+    +D V WN ++ GF     
Sbjct: 135 LHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSY 194

Query: 194 MGKAREVFDEMPQK----DAISWSIMIDG------YRKKKGDISSARILFEHMPIKDLIS 243
              +  VF +M       D+ + + ++        YR   G    A     H    D+  
Sbjct: 195 FEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLH---SDVYV 251

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
              +I  Y+K G     + LF+++ + ++ S++ MI GY  +   + A+ LFRE+L  G 
Sbjct: 252 LTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQ 311

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
           R +  +++G I        L L + I     +  I +   V TAL  +Y +   +  AR+
Sbjct: 312 RVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQ 371

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           +F    +K++ S+N MI+G   NG  + A+  F +M  +  P + +    +L AC+  G 
Sbjct: 372 LFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSP-NPVTVTSILSACAQLGA 430

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
            + G  +   +K    +E  +   + LVD+ ++ G + +A  + + M  K N+  W  ++
Sbjct: 431 LSIGKWVHGLIKSE-RLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDK-NVVTWNAMI 488


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 197/516 (38%), Positives = 300/516 (58%), Gaps = 28/516 (5%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A ++F+ + + +T + NTMI G++++S  + ++  +V+M   GL  D+ T   VL A   
Sbjct: 167 ARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAE 226

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L     G  I     K G   DV+V+ GLI +YSKCG     R +F+  +  DL+S+N +
Sbjct: 227 LQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAM 286

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS---ARILFEHMPIKDL 241
           + G+    E   A  +F E+          +  G R     +       + F H+ +  L
Sbjct: 287 ISGYTFNHETESAVTLFREL----------LASGQRVNSSTLVGLIPVYLPFNHLQLSRL 336

Query: 242 ISWNSMIDG--------------YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN 287
           I   S+  G              Y ++ ++  A+QLF+E PE+++ SW+ MI GY Q+G 
Sbjct: 337 IQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGL 396

Query: 288 PKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA 347
              A+ LF+EM+ Q + P+ ++V   +SACAQ+GAL +GKW+H  +K  R+  ++ V TA
Sbjct: 397 TDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTA 455

Query: 348 LIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407
           L+DMY KCGS+ EAR++F  M  KNV+++N MI G G++G G+EALK F +M   GIP  
Sbjct: 456 LVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPT 515

Query: 408 DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467
            + FL +L ACSHSGL +EG  IF SM  + G +P  EHY+C+VD+L RAG+L  AL  +
Sbjct: 516 GVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFI 575

Query: 468 ESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWE 527
           E MP++P  A+WG LL AC  H+N  +A V  + L +L  ++ G YVLLSNIY+    + 
Sbjct: 576 ERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFP 635

Query: 528 HALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
            A  +R++++KRK+ K  G ++IEID     F SG+
Sbjct: 636 KAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGD 671



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 117/480 (24%), Positives = 226/480 (47%), Gaps = 19/480 (3%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
            ++LL  + T + +LQI AQL  + +  +  ++++L         +      +LFN++ +
Sbjct: 17  FLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVA--HVRQLFNKVSK 74

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK-GLLVDNYTYPFVLKACGVLMGLVEGTE 133
           P+ ++ N +IRG++ +  P+ ++  Y ++++K  L  DN+TY F + A   L     G  
Sbjct: 75  PDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVL 134

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           +H   +  G   ++FV + ++ +Y K      AR VF+    +D V WN ++ GF     
Sbjct: 135 LHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSY 194

Query: 194 MGKAREVFDEMPQK----DAISWSIMIDG------YRKKKGDISSARILFEHMPIKDLIS 243
              +  VF +M       D+ + + ++        YR   G    A     H    D+  
Sbjct: 195 FEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLH---SDVYV 251

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
              +I  Y+K G     + LF+++ + ++ S++ MI GY  +   + A+ LFRE+L  G 
Sbjct: 252 LTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQ 311

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
           R +  +++G I        L L + I     +  I +   V TAL  +Y +   +  AR+
Sbjct: 312 RVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQ 371

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           +F    +K++ S+N MI+G   NG  + A+  F +M  +  P + +    +L AC+  G 
Sbjct: 372 LFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSP-NPVTVTSILSACAQLGA 430

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
            + G  +   +K    +E  +   + LVD+ ++ G + +A  + + M  K N+  W  ++
Sbjct: 431 LSIGKWVHGLIKSE-RLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDK-NVVTWNAMI 488


>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
          Length = 688

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 205/544 (37%), Positives = 306/544 (56%), Gaps = 48/544 (8%)

Query: 33  AQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSN 92
           AQ+  + L  E  TL +L+      +  ++  A+R+F+QI QPN +M+N++IRGY+ S +
Sbjct: 135 AQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDD 194

Query: 93  PQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNG 152
           P  A+  +  M   GL  + +T PFVLKACG      E   +HG  +K+G    VFV N 
Sbjct: 195 PIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNA 254

Query: 153 LIGMYSKCGHMGCARSVFEGSEIKDLVSWN-----------LVLRG-----FVECGEMGK 196
           LI +Y  CG + CAR +F+    K LVSWN           +++R      + +CG +  
Sbjct: 255 LIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIEITGVKIDIIVRNALXDMYAKCGNLHS 314

Query: 197 AREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGD 256
           A+ +FD   +K+ +SW+ MI  Y  + G I  AR +F+ MP K+++SWNSMI  Y +   
Sbjct: 315 AQAIFDRTQEKNVVSWTSMISAY-AQHGSIEVARQIFDQMPGKNVVSWNSMISCYLR--- 370

Query: 257 LVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISA 316
                                        G  +EAL LF +M    V PD  +++  ++A
Sbjct: 371 ----------------------------EGQYREALDLFNKMRNSRVVPDEATLVSILAA 402

Query: 317 CAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISY 376
           C+Q+G L +GK IH ++  ++    + +  +LIDMY KCG +  A  IF  M  KN++S+
Sbjct: 403 CSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSW 462

Query: 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436
           NV+I  L ++G G EA+K F +M+ +G   D++   G+L ACSHSGL   G   F  M  
Sbjct: 463 NVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGV 522

Query: 437 HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAE 496
              +  ++EHY+C+VDLL R G L +A+ ++  MPMKP++ +WG LL ACR H NV + +
Sbjct: 523 IYRVXREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGK 582

Query: 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNI 556
            +++ L+EL+    GLYVL+SNIY +A  WE   +IRK+M  R IKK    S IEIDG I
Sbjct: 583 QILKQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCI 642

Query: 557 KEFV 560
            EF+
Sbjct: 643 YEFM 646


>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Glycine max]
          Length = 563

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 200/559 (35%), Positives = 317/559 (56%), Gaps = 21/559 (3%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           +N ++SLL   K+   + ++   + T   I     LS+L+         +++ A+ +  Q
Sbjct: 4   QNTILSLLAKCKSMRELKKLHGLIVTTPTIKSIIPLSKLIDFCVDSEFGDINYADLVLRQ 63

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           I+ P+ Y+ N+MIRG+  S NP+ ++  Y  M   G   D++T+PFVLKAC V+     G
Sbjct: 64  IHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKACCVIADQDCG 123

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
             IH  +VK GF  D +   GL+ MY  C  M     VF+     ++V+W  ++ G+V+ 
Sbjct: 124 KCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVKN 183

Query: 192 GEMGKAREVFDEM------PQKDAISWSIMIDGYRKKKGDISSARILFEHM------PI- 238
            +  +A +VF++M      P +  +  +++   + +   DI + R + + +      P  
Sbjct: 184 NQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSR---DIDTGRWVHQRIRKAGYDPFM 240

Query: 239 ----KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
                ++I   ++++ YAK G L  A+ LFN+MP+RN+ SW+ MI+ Y Q+   +EAL L
Sbjct: 241 STSNSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDL 300

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           F +M   GV PD  + +  +S CA   AL LG+ +H ++ ++ I  D+ + TAL+DMY K
Sbjct: 301 FFDMWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLATALLDMYAK 360

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM-ETEGIPKDDLIFLG 413
            G L  A++IF S+ KK+V+ +  MI GL M+G G EAL  F  M E   +  D + ++G
Sbjct: 361 TGELGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPDHITYIG 420

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           VL ACSH GL  E  + F+ M    G+ P  EHY C+VDLLSRAG   +A  ++E+M ++
Sbjct: 421 VLFACSHVGLVEEAKKHFRLMTEMYGMVPGREHYGCMVDLLSRAGHFREAERLMETMTVQ 480

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
           PN+A+WG LL  C+ H+NV +A  V   L EL+    G+++LLSNIYA AG WE     R
Sbjct: 481 PNIAIWGALLNGCQIHENVCVANQVKVRLKELEPCQSGVHILLSNIYAKAGRWEEVNVTR 540

Query: 534 KMMRKRKIKKETGRSVIEI 552
           K+M+ ++I K  G S +E+
Sbjct: 541 KVMKHKRITKTIGHSSVEM 559


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 195/560 (34%), Positives = 305/560 (54%), Gaps = 53/560 (9%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           N  +SL Q       + Q+ A      +   PF  S+LL   + P   ++  A  +F++I
Sbjct: 17  NLHLSLFQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRI 76

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
            + +    NT+I+ Y ++      +  +  +  +  L DN+T P V+K C  L  + EG 
Sbjct: 77  QRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHE-YLPDNFTLPCVIKGCARLGVVQEGK 135

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           +IHG  +K+GF  DVFV   L+ MYSKCG + C                           
Sbjct: 136 QIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDC--------------------------- 168

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA 252
               AR+VFD M  KD + W+ +IDG                     +L+SWN+MI+GY 
Sbjct: 169 ----ARKVFDGMIDKDVVLWNSLIDG---------------------NLVSWNAMINGYM 203

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
           K GD  +A +LF +MP  ++ +W++MI GY  +G   +A+ +F  ML  G RP   +++ 
Sbjct: 204 KSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVS 263

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
            +SA + +  L  G+WIH +M+++   +D I+ T+LI+MY KCG ++ A  +F ++ KK 
Sbjct: 264 VLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKK 323

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
           V  +  +I GLG++G    AL  F +M   G+  + +IF+GVL AC+H+GL  +G + F 
Sbjct: 324 VGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFD 383

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV 492
            M     IEP LEHY CLVD+L RAG LE+A N +E+MP+ PN  +W +LL   RNH  +
Sbjct: 384 MMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKI 443

Query: 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
            + E   + ++E+  +  G Y+LLSN+YA +GMWE    +R+MM KR  +K+ G S +E 
Sbjct: 444 DIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEH 503

Query: 553 DGNIKEFVSGEIFDVQSEEL 572
            G + EF+ G+I   Q++E+
Sbjct: 504 KGTLHEFIVGDISHPQTKEI 523


>gi|297803844|ref|XP_002869806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315642|gb|EFH46065.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 852

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 194/549 (35%), Positives = 307/549 (55%), Gaps = 39/549 (7%)

Query: 30  QILAQLTTNDLIT-EPFTLSQLLMSLTSPNTLNMDQAERL---FNQIYQPNTYMHNTMIR 85
           Q+ AQL  N     EP  + Q L      +   ++  +R+   F      +++    ++R
Sbjct: 279 QVHAQLVVNRYNHLEPILVHQTLHFTKEFSRNVVNYVKRILHGFKSSKGMDSFSWGCLVR 338

Query: 86  GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC 145
             +Q    ++ +  Y+ M   G+   ++    VL+ACG +  +V+G  IH + +K G   
Sbjct: 339 FLSQHRKFKETVGVYIEMHYSGIPPSSHAITSVLRACGKMEDMVDGKPIHAQALKNGLCG 398

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
            V+V  GL+G+YS+ G++  A+ VF+    K+ VSWN +L G++E G + +AR VFD++P
Sbjct: 399 CVYVQTGLVGLYSRFGYIEMAKKVFDDIAEKNTVSWNSLLHGYLESGNLDEARRVFDKIP 458

Query: 206 QKDAISWSIMIDGYRKKKGDISSA-------------------------------RILFE 234
           +KD +SW+++I  Y  KKGD+S+A                               R  F+
Sbjct: 459 EKDVVSWNLIISSY-AKKGDMSNACSLFLTMPLKSSATWNILIGGYVNCREMKLARTYFD 517

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
            MP K+ +SW +MI GY K+GD+ +A++LF +M  ++   +  MI  YAQ+G PK+AL L
Sbjct: 518 TMPQKNSVSWITMISGYTKLGDVQSAEKLFRQMSRKDKLVYDAMIACYAQNGKPKDALKL 577

Query: 295 FREML--CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
           F +ML     ++PD I++   +SA +Q+G    G W+  ++    I +D ++ T+LID+Y
Sbjct: 578 FSQMLESNSDIQPDEITLSSVVSASSQLGDTSFGTWVESYITEHGIKIDDLLSTSLIDLY 637

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
           MK G   +A ++F  + KK+ +SY+ MI G G+NG   EA   F +M  + IP + + F 
Sbjct: 638 MKGGDFAKAFKLFNDLIKKDTVSYSAMIMGCGINGMATEANCLFREMIEKKIPPNLVTFT 697

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
           G+L A SHSGL  EGY+ F SMK H  +EP  +HY  +VD+L RAG LE+A  +++SMPM
Sbjct: 698 GLLSAYSHSGLVQEGYKCFNSMKDH-NLEPSADHYGIMVDMLGRAGRLEEAYELIKSMPM 756

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           +PN  +WG LLLA   H NV   E+     V+L+ D  G    L+NIY   G W+ A  +
Sbjct: 757 QPNAGVWGALLLASGLHNNVEFGEIACSHCVKLETDPTGYLSHLANIYTSVGRWDDARNV 816

Query: 533 RKMMRKRKI 541
           R  M ++K+
Sbjct: 817 RDSMEEKKL 825


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 201/562 (35%), Positives = 313/562 (55%), Gaps = 49/562 (8%)

Query: 45  FTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMK 104
           +T + ++  LT    L  D+A+ LF  + + +    N+M+ G+ Q    ++AL ++  M 
Sbjct: 87  YTWNSVVTGLTKLGFL--DEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMH 144

Query: 105 RKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG 164
           ++G +++ Y++  VL AC  L  + +G ++H  + K  FL DV++ + L+ MYSKCG++ 
Sbjct: 145 KEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVN 204

Query: 165 CARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVF----------DEMP--------- 205
            A+ VF+    +++VSWN ++  F + G   +A +VF          DE+          
Sbjct: 205 DAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACA 264

Query: 206 ---------------------QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
                                + D I  +  +D Y  K   I  AR +F+ MPI+++I+ 
Sbjct: 265 SLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMY-AKCSRIKEARFIFDSMPIRNVIAE 323

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
            SMI GYA      AA+ +F +M ERNV SW+ +I GY Q+G  +EAL LF  +  + V 
Sbjct: 324 TSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVC 383

Query: 305 PDVISVMGAISACAQVGALDLGKWIHV------FMKRSRITMDMIVQTALIDMYMKCGSL 358
           P   S    + ACA +  L LG   HV      F  +S    D+ V  +LIDMY+KCG +
Sbjct: 384 PTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCV 443

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
           +E   +F  M +++ +S+N MI G   NG+G EAL+ F +M   G   D +  +GVL AC
Sbjct: 444 EEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSAC 503

Query: 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
            H+G   EG   F SM R  G+ P  +HY+C+VDLL RAG LE+A +++E MPM+P+  +
Sbjct: 504 GHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVI 563

Query: 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
           WG+LL AC+ H+N+TL + V E L+E++  + G YVLLSN+YA+ G WE  + +RK MRK
Sbjct: 564 WGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRK 623

Query: 539 RKIKKETGRSVIEIDGNIKEFV 560
             + K+ G S I+I G+   F+
Sbjct: 624 EGVTKQPGCSWIKIQGHDHVFM 645



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 118/427 (27%), Positives = 204/427 (47%), Gaps = 76/427 (17%)

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           +H  V+K GF  ++F+ N LI  YSKCG +   R VF+    +++ +WN V+ G  + G 
Sbjct: 42  VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGF 101

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRK---------------KKG----DISSARI--- 231
           + +A  +F  MP++D  +W+ M+ G+ +               K+G    + S A +   
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSA 161

Query: 232 ---------------LFEHMP-IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
                          L    P + D+   ++++D Y+K G++  AQ++F+EM +RNV SW
Sbjct: 162 CSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSW 221

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH-VFMK 334
           + +I  + Q+G   EAL +F+ ML   V PD +++   ISACA + A+ +G+ +H   +K
Sbjct: 222 NSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVK 281

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYS--------------------------- 367
             ++  D+I+  A +DMY KC  + EAR IF S                           
Sbjct: 282 NDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARL 341

Query: 368 ----MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS---- 419
               M ++NV+S+N +IAG   NG  EEAL  F  ++ E +      F  +L AC+    
Sbjct: 342 MFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAE 401

Query: 420 -HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
            H G+    + +    K   G E  +   + L+D+  + G +E+   +   M M+ +   
Sbjct: 402 LHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM-MERDCVS 460

Query: 479 WGTLLLA 485
           W  +++ 
Sbjct: 461 WNAMIIG 467



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 115/258 (44%), Gaps = 42/258 (16%)

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
           +++H  + +S  + ++ +Q  LID Y KCGSL++ R++F  M ++N+ ++N ++ GL   
Sbjct: 40  RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99

Query: 387 GF-------------------------------GEEALKCFAQMETEGIPKDDLIFLGVL 415
           GF                                EEAL  FA M  EG   ++  F  VL
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHY---SCLVDLLSRAGELEQALNIVESMPM 472
            ACS      +G ++   + +     P L      S LVD+ S+ G +  A  + + M  
Sbjct: 160 SACSGLNDMNKGVQVHSLIAK----SPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGD 215

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           + N+  W +L+     +     A  V + ++E + +   +  L S I A A +   A+++
Sbjct: 216 R-NVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEV-TLASVISACASL--SAIKV 271

Query: 533 RKMMRKRKIKKETGRSVI 550
            + +  R +K +  R+ I
Sbjct: 272 GQEVHGRVVKNDKLRNDI 289


>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 646

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 211/605 (34%), Positives = 321/605 (53%), Gaps = 46/605 (7%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           + +PL+S+L+   +   +LQ+ A LT + L +  F  S+LL      +   +  A  +  
Sbjct: 30  VTHPLLSVLESCASFRRLLQLQALLTVSGLASNRFPASRLLAFCALSDPPRLAHAAAVLA 89

Query: 71  QIYQ-PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV 129
           Q  + PN YM  TM+RG+ ++  P  AL+ +  + R  L VD  T  F +KA        
Sbjct: 90  QCTEGPNAYMLATMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPT 149

Query: 130 EGTEIHGEVVKMGFLC-DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
           E   IH    K GF+   V   N L+ MY+    +  AR +F+    +D+VSW  ++ G+
Sbjct: 150 EA--IHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGY 207

Query: 189 VECGEMGKAREVFDEMPQKDAISWS---------------------------IMIDGYR- 220
              G   +A  VF  M   +++ W                            I+  G R 
Sbjct: 208 ARGGLPDEAWRVFCRMVVAESV-WPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRM 266

Query: 221 ------------KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
                        K G +++A+ +F+ MPIKD+ SW SM+  YAK GDL  A +LF E+P
Sbjct: 267 SVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIP 326

Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328
            RNV SWS M+  Y+    P EA+ +F +M+  GV P   +++  +SACAQ+ +LD+G W
Sbjct: 327 NRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTW 386

Query: 329 IH-VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
           ++  ++   ++ +   +  A IDM+ KCG +  A R+F +M  KNV+S+N MI   G++G
Sbjct: 387 LYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHG 446

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
             EEAL  F + +  GI  D+  ++GVL ACSH GL +EG   F+ MK   GIEP+ EHY
Sbjct: 447 QPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHY 506

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
           +C++DLL + G L++A  +  SMP+  + A WG LL ACR H NV + +   + L  L  
Sbjct: 507 ACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLAGLDP 566

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDV 567
            D G+YVL+S IYA    W     +R +MR R++KK  G S IE+DG   EF+  ++  V
Sbjct: 567 SDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEVDGKCHEFLVADVSHV 626

Query: 568 QSEEL 572
            SE++
Sbjct: 627 HSEDI 631


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 198/574 (34%), Positives = 322/574 (56%), Gaps = 67/574 (11%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           L++ +V+ L   K  T I Q+ A++  N L    + L++L+ +LT  N         +FN
Sbjct: 45  LESQIVTTLDGCKNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFN 104

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
           Q+  PN +++N +IRGY      +++  FY  M+++G++  ++T+  + KACG  M +  
Sbjct: 105 QVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGL 164

Query: 131 GTEIHGEVVKMG-FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
           G +IHG+ + +G F  D+ V N +I MY KCG                          F+
Sbjct: 165 GRQIHGQTILVGGFGEDLHVGNSMIDMYIKCG--------------------------FL 198

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMID 249
           ECG     R+VFDE                                MP +D+ISW  +I 
Sbjct: 199 ECG-----RKVFDE--------------------------------MPNRDVISWTELIS 221

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
            Y K G++ +A +LF+ +P +++ +W++M+ G+AQ+  P+EA+  F +M   GV  D I+
Sbjct: 222 AYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEIT 281

Query: 310 VMGAISACAQVGALDLGKWIHVFMKRSRI--TMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           ++G ISACAQ+GA     WI    ++S       ++V +ALIDMY KCGS+ +A R+F  
Sbjct: 282 LIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQG 341

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           M ++NV SY+ MI G  M+G   +A+K F +M    I  + + F+GVL ACSH+G+  +G
Sbjct: 342 MKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQG 401

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
           ++IF+ M++  GI+P  +HY+C+VDLL RAG L++A  +V++MP++P+  +WG LL ACR
Sbjct: 402 WQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACR 461

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
            H++  +A +    L EL+    G Y+LL+NIYA  G W     +RK+MR R ++K    
Sbjct: 462 IHKSPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAF 521

Query: 548 SVIEID-GNIKEFVSGEIFDVQSEELELVIQSFV 580
           S IE + G + EF SG++   +S E++  ++  +
Sbjct: 522 SWIESEKGMVHEFFSGDMTHPRSGEIKQALEDLL 555


>gi|2827553|emb|CAA16561.1| predicted protein [Arabidopsis thaliana]
 gi|7269122|emb|CAB79231.1| predicted protein [Arabidopsis thaliana]
          Length = 889

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 197/590 (33%), Positives = 319/590 (54%), Gaps = 49/590 (8%)

Query: 30  QILAQLTTNDLIT-EPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYT 88
           Q+ AQL  N     EP  + Q L      +   +   +R+       +++    ++R  +
Sbjct: 290 QVHAQLVVNRYNHLEPILVHQTLHFTKEFSRNIVTYVKRILKGFNGHDSFSWGCLVRFLS 349

Query: 89  QSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF 148
           Q    ++ +  Y++M   G+   ++    VL+ACG +  +V+G  IH + +K G    V+
Sbjct: 350 QHRKFKETVDVYIDMHNSGIPPSSHAVTSVLRACGKMENMVDGKPIHAQALKNGLCGCVY 409

Query: 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKD 208
           V  GL+G+YS+ G++  A+  F+    K+ VSWN +L G++E GE+ +AR VFD++P+KD
Sbjct: 410 VQTGLVGLYSRLGYIELAKKAFDDIAEKNTVSWNSLLHGYLESGELDEARRVFDKIPEKD 469

Query: 209 AISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
           A+SW+++I  Y  KKGD+ +A  LF  MP+K   SWN +I GY    ++  A+  F+ MP
Sbjct: 470 AVSWNLIISSY-AKKGDMGNACSLFSAMPLKSPASWNILIGGYVNCREMKLARTYFDAMP 528

Query: 269 ERNVFSWSIMIDGYA-------------------------------QHGNPKEALYLFRE 297
           ++N  SW  MI GY                                Q+G PK+AL LF +
Sbjct: 529 QKNGVSWITMISGYTKLGDVQSAEELFRLMSKKDKLVYDAMIACYTQNGKPKDALKLFAQ 588

Query: 298 MLCQG--VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
           ML +   ++PD I++   +SA +Q+G    G W+  ++    I +D ++ T+LID+YMK 
Sbjct: 589 MLERNSYIQPDEITLSSVVSANSQLGNTSFGTWVESYITEHGIKIDDLLSTSLIDLYMKG 648

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
           G   +A ++F ++ KK+ +SY+ MI G G+NG   EA   F  M  + IP + + F G+L
Sbjct: 649 GDFAKAFKMFSNLNKKDTVSYSAMIMGCGINGMATEANSLFTAMIEKKIPPNVVTFTGLL 708

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
            A SHSGL  EGY+ F SMK H  +EP  +HY  +VD+L RAG LE+A  +++SMPM+PN
Sbjct: 709 SAYSHSGLVQEGYKCFNSMKDH-NLEPSADHYGIMVDMLGRAGRLEEAYELIKSMPMQPN 767

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535
             +WG LLLA   H NV   E+     V+L+ D  G    L+ IY+  G W+ A  +R  
Sbjct: 768 AGVWGALLLASGLHNNVEFGEIACSHCVKLETDPTGYLSHLAMIYSSVGRWDDARTVRDS 827

Query: 536 MRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
           ++++K+             ++  F++G     +S  ++  +Q    TT++
Sbjct: 828 IKEKKL-------------SVGSFLAGSKIIDRSSRIKRCLQCQPATTLQ 864


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 193/558 (34%), Positives = 305/558 (54%), Gaps = 66/558 (11%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           ++SLLQ S+    +L I AQL  N    +PF + +LL S +  + +  D A R+F   + 
Sbjct: 52  IISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAI--DYASRIFQYTHN 109

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           PN Y++  +I G+  S N  +A+  Y  M  + +L DNY    +LKACG  + L EG E+
Sbjct: 110 PNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREV 169

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           H   +K+GF  +  V   ++ +Y K                               CGE+
Sbjct: 170 HSRALKLGFSSNRLVRLRIMELYGK-------------------------------CGEL 198

Query: 195 GKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKI 254
           G AR V                                FE MP +D+++   MI  Y+  
Sbjct: 199 GDARRV--------------------------------FEEMP-EDVVASTVMISSYSDQ 225

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
           G +  A  +F+ +  ++   W+ MIDG+ ++     AL  FR M  + VRP+  +++  +
Sbjct: 226 GLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVL 285

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
           SAC+Q+GAL++G+W+H +M++  I +++ V  ALI+MY +CGS+DEA+ +F  M  ++VI
Sbjct: 286 SACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVI 345

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434
           +YN MI+GL MNG   +A++ F  M    +   ++ F+GVL ACSH GL   G+ IF SM
Sbjct: 346 TYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSM 405

Query: 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTL 494
            R   +EP++EHY C+VDLL R G LE+A +++ +M M P+  + GTLL AC+ H+N+ L
Sbjct: 406 ARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLEL 465

Query: 495 AEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDG 554
            E V + L +    D G YVLLS++YA +G W+ A ++R  M++  ++KE G S IE++ 
Sbjct: 466 GEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNN 525

Query: 555 NIKEFVSGEIFDVQSEEL 572
            I EF+ G++   Q E +
Sbjct: 526 EIHEFLLGDLRHPQKERI 543


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 196/524 (37%), Positives = 303/524 (57%), Gaps = 17/524 (3%)

Query: 74  QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
             NT+++NTMIRG         A+  Y +M +  ++ D++T+ FVLKAC  L     G  
Sbjct: 66  NSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVM 125

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           IH  V K GF CDVFV   ++  YSKCG +  A  VF+   +K++VSW  ++ G   C E
Sbjct: 126 IHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICG---CIE 182

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYR--------KKKGDISSARILFEHMP----IKDL 241
            GK RE  D    +  +   +  DG+          + GD+ S R +   M      +++
Sbjct: 183 FGKFREAVDLF--RGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNV 240

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
               S++D Y K G +  A+ +F+ M E+++  WS MI GYA +G P+EA+ LF EM   
Sbjct: 241 FVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKV 300

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
            VRPD  +++GA+S+CA +GAL+LG W    M       + ++ T+LID Y KCGS++EA
Sbjct: 301 NVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEA 360

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
             ++  M +K+ + +N +I+GL M G    A   F QM   GIP ++  F+G+L  C+H+
Sbjct: 361 LGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHA 420

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           GL  +G   F SM     + P +EHY C+VDLL+RAG L++A N+++ MPMK N+ +WG+
Sbjct: 421 GLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGS 480

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           LL  CR H+   LAE V++ L+EL+  + G YVLLSNIY+ +  W+ A +IR  + ++ +
Sbjct: 481 LLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGM 540

Query: 542 KKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
           +K  G S +E+DG + EF+ G+     S+++   ++S  K   E
Sbjct: 541 QKLPGYSWVEVDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKE 584



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 163/354 (46%), Gaps = 18/354 (5%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +  A ++F+ +   N      MI G  +    ++A+  +  +   GL  D +    VL+A
Sbjct: 155 LRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRA 214

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G  I   + + G   +VFV   L+ MY+KCG M  AR VF+G   KD+V W
Sbjct: 215 CARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCW 274

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK--------KKGDISSARILF 233
           + +++G+   G   +A E+F EM + +       + G           + G+ +   + +
Sbjct: 275 SAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNY 334

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
           E   + + +   S+ID YAK G +  A  ++  M E++   ++ +I G A +G    A  
Sbjct: 335 EEF-LSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFG 393

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR---ITMDMIVQTALID 350
           +F +M   G+ P+  + +G +  C   G +D G+  H F   S    +T  +     ++D
Sbjct: 394 VFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGR--HYFNSMSHDFSVTPTIEHYGCMVD 451

Query: 351 MYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMN---GFGEEALKCFAQME 400
           +  + G LDEA  +   M  K NVI +  ++ G  ++      E  LK   ++E
Sbjct: 452 LLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELE 505



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 110/250 (44%), Gaps = 13/250 (5%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +M++A  +F+ + + +    + MI+GY  +  P++A+  +  M++  +  D Y     L 
Sbjct: 255 SMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALS 314

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           +C  L  L  G    G +    FL +  +   LI  Y+KCG M  A  V++  + KD V 
Sbjct: 315 SCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVV 374

Query: 181 WNLVLRGFVECGEMGKAREVFDEM-----PQKDAISWSIMIDGYRKKKGDISSARILFEH 235
           +N V+ G    G++G A  VF +M     P  +     ++        G +   R  F  
Sbjct: 375 FNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGC--THAGLVDDGRHYFNS 432

Query: 236 MP-----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQHGNPK 289
           M         +  +  M+D  A+ G L  A  L   MP + NV  W  ++ G   H   +
Sbjct: 433 MSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQ 492

Query: 290 EALYLFREML 299
            A ++ ++++
Sbjct: 493 LAEHVLKQLI 502


>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
          Length = 851

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 198/566 (34%), Positives = 306/566 (54%), Gaps = 57/566 (10%)

Query: 59  TLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK----------GL 108
           T NM+ A   F  +    T  +N ++ GY ++  P  AL  +  M  +          GL
Sbjct: 30  TGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRMPTRDLASYNALISGL 89

Query: 109 LVDNYTYPFVLKACGVLM---GLVEGTEIHGEVVKMGFLCDVFVV------------NGL 153
            +  +T P    A   +     +V  T +    V+ G L D   +              L
Sbjct: 90  SLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGLLADAIQLFRQMPERNHISYTVL 149

Query: 154 IGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWS 213
           +G +   G +  AR +F+    KD+V+W  +L G+ + G + +AR +FDEMP+++ +SW+
Sbjct: 150 LGGFLDAGRVDEARKLFDEMPAKDVVAWTAMLSGYCQVGRVDEARTLFDEMPKRNVVSWT 209

Query: 214 IMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP----- 268
            M+ GY  + G ++ AR LFE MP ++ +SW +M+ GY + G +  A++LFN MP     
Sbjct: 210 AMVSGY-AQNGQVNLARKLFEVMPERNEVSWTAMLFGYIQAGRIEDAEELFNAMPDHPLA 268

Query: 269 --------------------------ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
                                     ER+  +WS +I  Y Q+    EAL  FREML  G
Sbjct: 269 ACNGMIVGFGQQGMVDAAKSVFDRMCERDDGTWSAIIKAYEQNEFLMEALSTFREMLHIG 328

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           +RP+  SV+  ++ CA +  LD G+ +H  M R    MD+   +ALI MY+KCG+LD+A+
Sbjct: 329 IRPNYPSVISILTVCAALAVLDYGREVHGAMLRRSFDMDIYAVSALITMYIKCGNLDKAK 388

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
           R+F+    K+V+ +N MI G   +G GEEAL  F  M   G+  D + ++G L ACS++G
Sbjct: 389 RVFHMFEPKDVVMWNSMITGYAQHGLGEEALHIFDDMRLAGMVPDGITYIGALTACSYTG 448

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
              EG  IF SM+   GI+P LEHY+C+VDLL RAG +++AL ++++MP++P+  +WG L
Sbjct: 449 KVKEGRDIFNSMRTKSGIKPGLEHYACMVDLLGRAGLVDEALYLIKTMPVEPDAVIWGAL 508

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
           + ACR H+N  +AE+  + L+EL+  + G YVLLS+IY  +G WE A  +RK +  R + 
Sbjct: 509 MGACRMHKNAEIAEISAKKLLELEPGNAGPYVLLSHIYTSSGRWEDASNMRKFISSRHLN 568

Query: 543 KETGRSVIEIDGNIKEFVSGEIFDVQ 568
           K  G S IE D  +  F SG++   Q
Sbjct: 569 KSLGCSWIEYDKRVHLFKSGDVLAHQ 594



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 155/342 (45%), Gaps = 50/342 (14%)

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
           V   N  I   ++ G+M  AR+ FE   ++   S+N +L G+        A  VF  MP 
Sbjct: 17  VVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRMPT 76

Query: 207 KDAISWSIMIDGYRKKK--------------------------------GDISSARILFE 234
           +D  S++ +I G   ++                                G ++ A  LF 
Sbjct: 77  RDLASYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGLLADAIQLFR 136

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
            MP ++ IS+  ++ G+   G +  A++LF+EMP ++V +W+ M+ GY Q G   EA  L
Sbjct: 137 QMPERNHISYTVLLGGFLDAGRVDEARKLFDEMPAKDVVAWTAMLSGYCQVGRVDEARTL 196

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYM 353
           F EM     + +V+S    +S  AQ G ++L  K   V  +R+ ++      TA++  Y+
Sbjct: 197 FDEM----PKRNVVSWTAMVSGYAQNGQVNLARKLFEVMPERNEVSW-----TAMLFGYI 247

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           + G +++A  +F +M    + + N MI G G  G  + A   F +M      +DD  +  
Sbjct: 248 QAGRIEDAEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKSVFDRM----CERDDGTWSA 303

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           ++ A   +    E    F+ M  H GI P   +Y  ++ +L+
Sbjct: 304 IIKAYEQNEFLMEALSTFREML-HIGIRP---NYPSVISILT 341



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 21/211 (9%)

Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
           S  T  ++   A I    + G+++ AR  F +M  +   SYN ++AG   N   + AL+ 
Sbjct: 11  SSSTPAVVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRV 70

Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGI--EPKLEHYSCLVDL 453
           F +M     P  DL     LI    SGL+   + +  +      I   P +  ++ L+  
Sbjct: 71  FHRM-----PTRDLASYNALI----SGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRG 121

Query: 454 LSRAGELEQALNIVESMPMKPNLA---LWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
             R G L  A+ +   MP + +++   L G  L A R  +   L +       E+ A D 
Sbjct: 122 YVRHGLLADAIQLFRQMPERNHISYTVLLGGFLDAGRVDEARKLFD-------EMPAKDV 174

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
             +  + + Y   G  + A  +   M KR +
Sbjct: 175 VAWTAMLSGYCQVGRVDEARTLFDEMPKRNV 205


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 208/576 (36%), Positives = 325/576 (56%), Gaps = 21/576 (3%)

Query: 12  KNPLVSLLQISKTTTHILQ---ILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERL 68
           K   VSLL+       + Q   + A++    L TE +  + LL   T   +  M+ A  +
Sbjct: 306 KVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGS--MEDALEV 363

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           FN +   N      MI G+ Q    ++A  F+  M   G+  +  T+  +L AC     L
Sbjct: 364 FNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSAL 423

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
            +G +IH  ++K G++ D  V   L+ MY+KCG +  AR+VFE    +++V+WN ++  +
Sbjct: 424 KQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAY 483

Query: 189 VECGEMGKAREVFD----EMPQKDAISWSIMIDGYRKKK----GDISSARIL---FEHMP 237
           V+  +   A   F     E  + D+ +++ +++  +       G    + I+   FE   
Sbjct: 484 VQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFE--- 540

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
             DL   N+++  +   GDL++A  LFN+MPER++ SW+ +I G+ QHG  + A   F+ 
Sbjct: 541 -SDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKM 599

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
           M   GV+PD I+  G ++ACA   AL  G+ +H  +  + +  D++V T LI MY KCGS
Sbjct: 600 MQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGS 659

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
           +D+A  +F+++ KKNV S+  MI G   +G G+EAL+ F QM+ EG+  D + F+G L A
Sbjct: 660 IDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSA 719

Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
           C+H+GL  EG   F+SMK    IEP++EHY C+VDL  RAG L +A+  +  M +KP+  
Sbjct: 720 CAHAGLIKEGLHHFESMKDF-NIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSR 778

Query: 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537
           LWG LL AC+ H +V LAE V +  +EL  +D G+YV+LSNIYA AGMW+   ++RK+M 
Sbjct: 779 LWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVML 838

Query: 538 KRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELE 573
            R + K+ G+S IE+DG +  F S +    Q EE+ 
Sbjct: 839 DRGVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEEIH 874



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 126/439 (28%), Positives = 221/439 (50%), Gaps = 15/439 (3%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N + A+++F+++   + Y  N ++ GY Q    ++A   +  M + G+  D YT+ ++L 
Sbjct: 154 NTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLN 213

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC     + +G E+   ++  G+  D+FV   LI M+ KCG +  A  VF     +DL++
Sbjct: 214 ACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLIT 273

Query: 181 WNLVLRGFVECGEMGKAREVF----DEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           W  ++ G     +  +A  +F    +E  Q D +++  ++      +      R+   H 
Sbjct: 274 WTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRV---HA 330

Query: 237 PIK------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
            +K      ++    +++  Y K G +  A ++FN +  RNV SW+ MI G+AQHG  +E
Sbjct: 331 RMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEE 390

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
           A   F +M+  G+ P+ ++ M  + AC++  AL  G+ IH  + ++    D  V+TAL+ 
Sbjct: 391 AFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLS 450

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           MY KCGSL +AR +F  ++K+NV+++N MI     +   + A+  F  +  EGI  D   
Sbjct: 451 MYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSST 510

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
           F  +L  C  S  A E  +  QS+    G E  L   + LV +    G+L  A+N+   M
Sbjct: 511 FTSILNVCK-SPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDM 569

Query: 471 PMKPNLALWGTLLLACRNH 489
           P + +L  W T++     H
Sbjct: 570 PER-DLVSWNTIIAGFVQH 587



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 114/402 (28%), Positives = 193/402 (48%), Gaps = 48/402 (11%)

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           D+  WN+++  + +CG    A+++FDEMP KD  SW++++ GY + +    + R L E M
Sbjct: 138 DIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFR-LHEQM 196

Query: 237 ------PIK---------------------------------DLISWNSMIDGYAKIGDL 257
                 P K                                 DL    ++I+ + K G +
Sbjct: 197 VQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGV 256

Query: 258 VAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISAC 317
             A ++FN +P R++ +W+ MI G A+H   K+A  LF+ M  +GV+PD ++ +  + AC
Sbjct: 257 DDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKAC 316

Query: 318 AQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYN 377
               AL+ GK +H  MK   +  ++ V TAL+ MY KCGS+++A  +F  +  +NV+S+ 
Sbjct: 317 NHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWT 376

Query: 378 VMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRH 437
            MIAG   +G  EEA   F +M   GI  + + F+ +L ACS      +G +I   + + 
Sbjct: 377 AMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIK- 435

Query: 438 CGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEV 497
            G        + L+ + ++ G L  A N+ E +  K N+  W  ++ A   H+    A  
Sbjct: 436 AGYITDDRVRTALLSMYAKCGSLMDARNVFERIS-KQNVVAWNAMITAYVQHEKYDNAVA 494

Query: 498 VVEGLVE--LKADDCGLYVLL----SNIYADAGMWEHALRIR 533
             + L++  +K D      +L    S    + G W  +L IR
Sbjct: 495 TFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIR 536


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 195/583 (33%), Positives = 324/583 (55%), Gaps = 25/583 (4%)

Query: 10  SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLF 69
           +L++ ++       T  H+ Q  + L T+ L    F LS LL S T     ++     LF
Sbjct: 6   TLRHSILCCFHKCGTFDHLNQTTSILITSGLAHHTFFLSDLLRSATK----DLGYTLLLF 61

Query: 70  NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV 129
           +++  P  ++ NT++R ++ SS PQ  L  Y  ++  G++ D +T+P +LKA   L    
Sbjct: 62  DRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN-E 120

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
              + +  +VK G   D FV N L+  ++ CG++ C+R +F  +  KD+VSW  ++ G +
Sbjct: 121 NPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCL 180

Query: 190 ECGEMGKAREVF----------DEMPQKDAISWSIMID----GYRKKKGDISSARILFEH 235
             G   +A E F          DE+     +  + M+     G       + S R+++  
Sbjct: 181 RNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIW-- 238

Query: 236 MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
               D+   ++++D Y+K G    A ++FNEMP RN+ SW  +I GY Q    KEAL +F
Sbjct: 239 ----DVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVF 294

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
           +EM+ +G+ P+  +V  A++ACAQ+G+LD G+W+H ++ RS++ ++  + TAL+DMY KC
Sbjct: 295 QEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKC 354

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
           G +DEA  +F  +  K+V  +  MI GL M G    +L  F+QM    +  + + FLGVL
Sbjct: 355 GCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVL 414

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
            AC+H GL  EG  +F+ M     +EP ++HY C+VDLL RAG LE+A+  +ESMPM+P 
Sbjct: 415 SACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPT 474

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535
             +WG L   C  H+   L E +   L++L+    G Y+LL+N+Y+    WE A  +R++
Sbjct: 475 PGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRL 534

Query: 536 MRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQS 578
           M+ + + K    S IE++G I EF++ +   ++S  + +++ S
Sbjct: 535 MKGKGVDKSPACSWIEVNGVIHEFIAFDKSHIESINVYMMLGS 577


>gi|297805312|ref|XP_002870540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316376|gb|EFH46799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 187/486 (38%), Positives = 294/486 (60%), Gaps = 5/486 (1%)

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL-VDNYTYPFVLKACGVLM 126
           +F ++  P TY+ N +I+GY+      + +S  + M R G    D YT+P V+K C    
Sbjct: 62  VFERVPYPGTYLWNHLIKGYSNKFLFFETVSLLMRMMRTGFARPDEYTFPLVMKVCSNNA 121

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
               G+ +HG V+++GF  DV +    +  Y KC  +  AR VF     +++VSW  ++ 
Sbjct: 122 EFRVGSTVHGLVLRIGFDKDVVLGTSFVDFYGKCKDLCSARKVFGEMPERNVVSWTALIV 181

Query: 187 GFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNS 246
            +V+ GE+ +A+ +FD MP+++  +W+ ++DG   K GD+ +AR LF+ MP +D+IS+ S
Sbjct: 182 AYVKSGELEEAKRMFDLMPERNLGTWNALVDGL-VKSGDLVNARKLFDEMPKRDIISYTS 240

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           MIDGYAK GD+V+A+ LF      +V +WS +I GYAQ+G P EA  +F EM  + V+PD
Sbjct: 241 MIDGYAKGGDMVSARDLFENARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPD 300

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRS--RITMDMIVQTALIDMYMKCGSLDEARRI 364
              ++G +SAC+Q+G  +L + +  ++ +S  + +   ++  ALIDM  KCG +D A ++
Sbjct: 301 EFIMVGLMSACSQMGCFELCEKVDSYLHQSMNKFSSHYVI-PALIDMNAKCGHMDRAAKL 359

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F  M +++++SY  M+ G+ ++G G EA++ F +M  EGI  D++ F  +L  CS S L 
Sbjct: 360 FEEMPQRDLVSYCSMMEGMAIHGCGSEAVRLFEKMVDEGIVPDEVAFTVILKVCSQSRLV 419

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            EG R F+ M++   I    +HYSC+V+LLSR G+L++A  +++SMP + + + WG+LL 
Sbjct: 420 EEGLRYFELMRKEYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLG 479

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
            C  H N  +AEVV   L EL+    G YVLLSNIYA    W     +R  M +  IKK 
Sbjct: 480 GCSLHGNTEIAEVVARQLFELEPQSAGSYVLLSNIYAALDRWADLAHLRDKMNENGIKKI 539

Query: 545 TGRSVI 550
            GRS I
Sbjct: 540 CGRSWI 545


>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 794

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 211/605 (34%), Positives = 321/605 (53%), Gaps = 46/605 (7%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           + +PL+S+L+   +   +LQ+ A LT + L +  F  S+LL      +   +  A  +  
Sbjct: 30  VTHPLLSVLESCASFRRLLQLQALLTVSGLASNRFPASRLLAFCALSDPPRLAHAAAVLA 89

Query: 71  QIYQ-PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV 129
           Q  + PN YM  TM+RG+ ++  P  AL+ +  + R  L VD  T  F +KA        
Sbjct: 90  QCTEGPNAYMLATMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPT 149

Query: 130 EGTEIHGEVVKMGFLC-DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
           E   IH    K GF+   V   N L+ MY+    +  AR +F+    +D+VSW  ++ G+
Sbjct: 150 EA--IHCVAFKRGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGY 207

Query: 189 VECGEMGKAREVFDEMPQKDAISWS---------------------------IMIDGYR- 220
              G   +A  VF  M   +++ W                            I+  G R 
Sbjct: 208 ARGGLPDEAWRVFCRMVVAESV-WPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRM 266

Query: 221 ------------KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
                        K G +++A+ +F+ MPIKD+ SW SM+  YAK GDL  A +LF E+P
Sbjct: 267 SVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIP 326

Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328
            RNV SWS M+  Y+    P EA+ +F +M+  GV P   +++  +SACAQ+ +LD+G W
Sbjct: 327 NRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTW 386

Query: 329 IH-VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
           ++  ++   ++ +   +  A IDM+ KCG +  A R+F +M  KNV+S+N MI   G++G
Sbjct: 387 LYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHG 446

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
             EEAL  F + +  GI  D+  ++GVL ACSH GL +EG   F+ MK   GIEP+ EHY
Sbjct: 447 QPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRAEHY 506

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
           +C++DLL + G L++A  +  SMP+  + A WG LL ACR H NV + +   + L  L  
Sbjct: 507 ACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLAGLDP 566

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDV 567
            D G+YVL+S IYA    W     +R +MR R++KK  G S IE+DG   EF+  ++  V
Sbjct: 567 SDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEVDGKCHEFLVADVSHV 626

Query: 568 QSEEL 572
            SE++
Sbjct: 627 HSEDI 631


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 203/615 (33%), Positives = 330/615 (53%), Gaps = 77/615 (12%)

Query: 10  SLKNP--LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAER 67
           +++ P  +++L++       + QI A+   + L    F +++++ S  S   L  D A +
Sbjct: 2   TIQTPKSVLALIETCTNIQQLKQIHAKSIISSLSYTQFIITKIINSFLSHACL--DYATQ 59

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKR-KGLLVDNYTYPFVLKACGVLM 126
           +FNQ  +P+ +++N MIR Y+ S  P  A+S Y  M+  + +L D YTYPFV KAC    
Sbjct: 60  VFNQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQF 119

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
            + +G E+HG +V++G+  D F+ + L+  Y                             
Sbjct: 120 AVEKGKEVHGVIVRIGYELDGFLQSSLLNFY----------------------------- 150

Query: 187 GFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKD------ 240
             + CGE+G A++VFDE   KD + W+ +I GY ++   + S  +  E + +K+      
Sbjct: 151 --MVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEG 208

Query: 241 ---------LISWN-------------------------SMIDGYAKIGDLVAAQQLFNE 266
                    + S N                         ++I+ Y K G L  A++LF+E
Sbjct: 209 TMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDE 268

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326
           +PE+N   W+ +I GY Q G+  E + L REM    ++PD  +V G +SACAQ+GA +LG
Sbjct: 269 IPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLG 328

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
            W+H F ++  I  D+ + TALIDMY KCG +  AR++F  M ++NV ++N +++G   +
Sbjct: 329 NWVHRFAEKKGI-WDVFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASH 387

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
           G  E A++ F++M   G   D + FL VL AC+HSGL   G + F  M ++  I P++EH
Sbjct: 388 GQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEH 447

Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506
           Y C+VDLL RAG L++A  +++ M ++PN+ +WG LL AC  H N+ + E     +++L 
Sbjct: 448 YGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSACSIHGNIEIGEWAAHHMIKLN 507

Query: 507 ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFD 566
           A D G YV+L+N+YA A  +     +R+MM ++ I K  G S+IEI   + EFV  +   
Sbjct: 508 AMDGGSYVILANLYASAQRFNRVKAVREMMVEKGICKSHGCSMIEIGDVVHEFVVADKMH 567

Query: 567 VQSEELELVIQSFVK 581
            +SEE+  V+    K
Sbjct: 568 PRSEEIYSVLDELSK 582


>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
 gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
          Length = 508

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 186/515 (36%), Positives = 289/515 (56%), Gaps = 62/515 (12%)

Query: 65  AERLFNQI-YQPNTYMHNTMIRGYTQS-SNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
           A  LF  I + P+ Y++N +I+  + S ++P+ ++  Y N++  GL  D+Y++PF LKA 
Sbjct: 29  AYSLFTSITHAPDIYLYNNIIKALSSSPTHPKASIFLYNNIQLAGLRPDSYSFPFALKAV 88

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
                +  G ++H + ++ G   D+ V+   + MYS  G  GC                 
Sbjct: 89  TRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFVQMYSSFGS-GC----------------- 130

Query: 183 LVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLI 242
                      +  AR++FD M                               M   D+ 
Sbjct: 131 -----------ICDARKMFDGMS------------------------------MSTGDVA 149

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
            WN+M++GYAK GDL  A+ LF  MP+RNV SW+ +I GYAQ   P +A+ LFR M  + 
Sbjct: 150 LWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIALFRRMQLEN 209

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKR-SRITMDMIVQTALIDMYMKCGSLDEA 361
           V PD I+++ A++ACA++GAL+LG+WI  ++ R   +T ++ +  ALIDMY K G +  A
Sbjct: 210 VEPDEIAMLVALTACARLGALELGEWIRHYIDRLGLLTTNIPLNNALIDMYAKSGDIKSA 269

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
            ++F +M  K +I++  MIAGL ++G G EAL+ F++ME   +  +D+ F+ +L ACSH 
Sbjct: 270 LQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKPNDITFIAILSACSHV 329

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           GL   G   F  M    GIEPK+EHY C++DLL RAG L++A  ++  MP +PN  +WG+
Sbjct: 330 GLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTLLAQMPFEPNAVIWGS 389

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           LL AC  H +  L E+ ++ L+EL+ D+ G Y LLSNIYA  G W  +  +RK+M    +
Sbjct: 390 LLAACNTHGDPELGELALQHLLELEPDNSGNYALLSNIYASRGRWNESRVVRKVMWDAGV 449

Query: 542 KKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
           KK  G S+IE++  + EF++GEI   Q + ++ V+
Sbjct: 450 KKMPGGSLIEVNNRVHEFIAGEISHSQFDRIQEVL 484


>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Glycine max]
          Length = 595

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 197/573 (34%), Positives = 318/573 (55%), Gaps = 5/573 (0%)

Query: 10  SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLF 69
           SLK  L+ L+          QI A L T+ L+T    +++    L    T        L 
Sbjct: 7   SLKWVLLDLIHKCNDLRSFKQIHAHLLTSALVTNDLVVTKAANFLGKHITDVHYPCNFLK 66

Query: 70  NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV 129
              +  +++  N +I GY     P  A+  Y    R G + D YT+P VLK+C    G+ 
Sbjct: 67  QFDWSLSSFPCNLLISGYASGQLPWLAILIYRWTVRNGFVPDVYTFPAVLKSCAKFSGIG 126

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
           E  + H   VK G  CD++V N L+ +YS CG    A  VFE   ++D+VSW  ++ G+V
Sbjct: 127 EVRQFHSVSVKTGLWCDIYVQNTLVHVYSICGDNVGAGKVFEDMLVRDVVSWTGLISGYV 186

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR----ILFEHMPIKDLISWN 245
           + G   +A  +F  M  +  +   + I G   K G ++  +    ++F+ +  ++L+  N
Sbjct: 187 KTGLFNEAISLFLRMNVEPNVGTFVSILGACGKLGRLNLGKGIHGLVFKCLYGEELVVCN 246

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           +++D Y K   +  A+++F+EMPE+++ SW+ MI G  Q  +P+E+L LF +M   G  P
Sbjct: 247 AVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSPRESLDLFSQMQASGFEP 306

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D + +   +SACA +G LD G+W+H ++   RI  D+ + T L+DMY KCG +D A+RIF
Sbjct: 307 DGVILTSVLSACASLGLLDCGRWVHEYIDCHRIKWDVHIGTTLVDMYAKCGCIDMAQRIF 366

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
             M  KN+ ++N  I GL +NG+G+EALK F  +   G   +++ FL V  AC H+GL  
Sbjct: 367 NGMPSKNIRTWNAYIGGLAINGYGKEALKQFEDLVESGTRPNEVTFLAVFTACCHNGLVD 426

Query: 426 EGYRIFQSMKRHC-GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
           EG + F  M      + P LEHY C+VDLL RAG + +A+ ++++MPM P++ + G LL 
Sbjct: 427 EGRKYFNEMTSPLYNLSPCLEHYGCMVDLLCRAGLVGEAVELIKTMPMPPDVQILGALLS 486

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           +   + NV   + +++ L  ++  D G+YVLLSN+YA    W     +R++M+++ I K 
Sbjct: 487 SRNTYGNVGFTQEMLKSLPNVEFQDSGIYVLLSNLYATNKKWAEVRSVRRLMKQKGISKA 546

Query: 545 TGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
            G S+I +DG   EF+ G+    QSEE+ +++ 
Sbjct: 547 PGSSIIRVDGMSHEFLVGDNSHPQSEEIYVLLN 579


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 202/577 (35%), Positives = 319/577 (55%), Gaps = 16/577 (2%)

Query: 13  NPLVSLLQISKTTTHILQILAQL-TTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
            P      +    +++ Q+ A L  + +L     +   LL +  +  TL +  A  LF  
Sbjct: 17  GPAPPRAPLRADPSYLPQLHAALIKSGELTGSAKSFHSLLEAAAASPTL-LPYAVSLFRL 75

Query: 72  IYQP--NTYMHNTMIRGYTQSSNPQKALSFYVNM--KRKGLLVDNYTYPFVLKACGVLMG 127
             +P  +T  +N ++R +  + +P+ AL  ++ M         D +T    LK+C  +  
Sbjct: 76  GPRPPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCA 135

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
           L  G  +    VK G + D FV++ LI MY+ CG +  AR VF+ +E   +V WN ++  
Sbjct: 136 LDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAA 195

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI---LFEHMPIKDLIS- 243
           +++ G+  +  E+F  M +       + +       G I  A++   +  H+  + L   
Sbjct: 196 YLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARN 255

Query: 244 ---WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
                +++D YAK G++  A++LF+ M  R+V +WS MI GY Q    +EAL LF EM  
Sbjct: 256 PKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQL 315

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
             V P+ ++++  +SACA +GAL+ GKW+H +++R R+++  I+ TAL+D Y KCG +D+
Sbjct: 316 ARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDD 375

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           A   F SM  KN  ++  +I G+  NG G EAL+ F+ M   GI   D+ F+GVL+ACSH
Sbjct: 376 AVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSH 435

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
           S L  EG R F SM R  GI+P++EHY C+VDLL RAG +++A   + +MP++PN  +W 
Sbjct: 436 SCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWR 495

Query: 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540
            LL +C  H+NV + E  ++ ++ L     G YVLLSNIYA AG W+ A  +RK M+ R 
Sbjct: 496 ALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRG 555

Query: 541 IKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           I+K  G S+IE+DG + EF +    D    EL  + Q
Sbjct: 556 IEKTPGCSLIELDGVVFEFFAE---DSDHPELREIYQ 589


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 201/583 (34%), Positives = 327/583 (56%), Gaps = 49/583 (8%)

Query: 45  FTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMK 104
           F+ + ++ + T    L  D A  +F ++ Q +    N+MI G+ Q     +AL ++  M 
Sbjct: 86  FSWNSIICAFTKSGFL--DDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMH 143

Query: 105 RKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG 164
             G LV+ Y++   L AC  L  L  G++IH  V +  +L DV++ + L+ MYSKCG + 
Sbjct: 144 GHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVE 203

Query: 165 CARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM------P------------- 205
            A+SVF+   ++  VSWN ++  + + G + +A ++F EM      P             
Sbjct: 204 YAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACA 263

Query: 206 ---------------------QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
                                + D I  + ++D Y  K   I+ ARI+F+ MPI+ ++S 
Sbjct: 264 TISAIKEGQQIHARVVKCDEFRNDLILGNALLDMY-AKCNRINEARIIFDMMPIRSVVSE 322

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
            SM+ GYAK   +  A+ +F+ M  ++V +W+ +I G  Q+G  +EAL LFR +  + V 
Sbjct: 323 TSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVW 382

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM------DMIVQTALIDMYMKCGSL 358
           P   +    ++ACA +  L LG+  H  + +           D+ V  +LIDMYMKCGS+
Sbjct: 383 PTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSV 442

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
           +   R+F  M +K+ +S+N MI G   NGFG +AL+ F +M   G   D +  +GVL AC
Sbjct: 443 ENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCAC 502

Query: 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
           SH+GL  EG   F+SM    G+ P  +HY+C+VDLL RAG LE+A N++E M M+P+  +
Sbjct: 503 SHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIV 562

Query: 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
           WG+LL AC+ H+N+ L E VV+ L+E+  ++ G YVLLSN+YA+   W++ +R+RK+MR+
Sbjct: 563 WGSLLAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQ 622

Query: 539 RKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
           R + K+ G S IEI G +  F+  +    + +E+ +V+++ ++
Sbjct: 623 RGVVKQPGCSWIEIQGELNVFMVKDKRHARKKEIYMVLRTILQ 665



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 122/466 (26%), Positives = 210/466 (45%), Gaps = 90/466 (19%)

Query: 102 NMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCG 161
           ++K   L +D+  +  +L  C       + + +H  ++K  F  + F+ N LI +Y KCG
Sbjct: 9   HLKGDLLFLDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCG 68

Query: 162 HMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK 221
            +  AR +F+    +++ SWN ++  F + G +  A  +F++MPQ D  SW+ MI G+ +
Sbjct: 69  CVDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGF-E 127

Query: 222 KKGDISSARILFEHMP---------------------------------------IKDLI 242
           + G    A + F  M                                        + D+ 
Sbjct: 128 QHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVY 187

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
             ++++D Y+K G +  AQ +F+EM  R+  SW+ +I  Y Q+G   EAL +F EM+  G
Sbjct: 188 MGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCG 247

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHV-FMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
           V PD +++   +SACA + A+  G+ IH   +K      D+I+  AL+DMY KC  ++EA
Sbjct: 248 VEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEA 307

Query: 362 RRI-------------------------------FYSMTKKNVISYNVMIAGLGMNGFGE 390
           R I                               F +M  K+VI++N +IAG   NG  E
Sbjct: 308 RIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENE 367

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIAC-----------SHSGLATEGYRIFQSMKRHCG 439
           EAL  F  ++ E +      F  +L AC           +HS +   G+R FQ      G
Sbjct: 368 EALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFR-FQY-----G 421

Query: 440 IEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
            +  +   + L+D+  + G +E    + + M ++ +   W  +++ 
Sbjct: 422 EDSDVFVGNSLIDMYMKCGSVENGCRVFQHM-LEKDCVSWNAMIVG 466


>gi|413925246|gb|AFW65178.1| hypothetical protein ZEAMMB73_703358 [Zea mays]
          Length = 572

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 189/542 (34%), Positives = 289/542 (53%), Gaps = 38/542 (7%)

Query: 43  EPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVN 102
            P  L +++  L S   L    +   F       T++HN +IR    S +P+ + + + +
Sbjct: 23  SPDYLRRIIPHLPSHPKLAAAVSSLYFPLFPSSATFLHNLLIRASAASPSPRLSFAAFSS 82

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVE-GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCG 161
           + R G L D++T+P + K+          G ++H +  + G L D F VN L+ MY+   
Sbjct: 83  LLRSGHLPDHFTFPPLAKSASKFPSFPRTGAQVHAQAARRGLLADAFAVNSLLAMYAALR 142

Query: 162 HMGCARSVFEG-SEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR 220
                R V E  +E  D+VSWN V+ G+  CGE+G AR  FD MP+++  SWS M+  Y 
Sbjct: 143 DAASMRGVLESCAEAADVVSWNTVVAGYARCGELGNARRAFDGMPRRNGASWSAMVGAYA 202

Query: 221 K--------------------------------KKGDISSARILFEHMPIKDLISWNSMI 248
                                            + G +  AR +F+ MP ++L+SWN+M+
Sbjct: 203 AAGQLDVARDMFDRAPAAGRSVVTWNSMVAGLARHGLLPLARKMFDEMPARNLVSWNAMV 262

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
            GYA  GD+  A++LF+ MPE++V SW+ M+ GYA+ G   +AL LFR M    VRP+ +
Sbjct: 263 RGYAVNGDVDGARELFDAMPEKDVVSWTCMVSGYARAGRHAQALELFRTMQSGDVRPNEV 322

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMD--MIVQTALIDMYMKCGSLDEARRIFY 366
           +++   SACA++ AL  G+W H F+ +  + +D    +  ALIDMY KCG  D A ++F 
Sbjct: 323 TMVSVFSACARLAALKEGRWAHAFIGKRGMVLDDGFNLGAALIDMYAKCGRPDVAAKVFR 382

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
           S+ +KNV ++N +IAGL  NG     +  F QM+      D + F+ VL AC+ +GL  E
Sbjct: 383 SLDRKNVSAWNALIAGLAANGDARRCIDVFEQMKVSDEKPDSVTFVSVLAACARAGLVDE 442

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G R F+SM    G++P+L+HY C+VDLL RAG +++A  +V  MPM P+  +  TLL AC
Sbjct: 443 GRRCFRSMSSGFGVQPELKHYGCMVDLLGRAGLVDEAEELVRGMPMAPDDKVLATLLGAC 502

Query: 487 RNHQNVTLAEVVVEGLVEL--KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           R  +   +AE V   +  L  K      Y ++S++ A A  W  AL+ +  M K  I K 
Sbjct: 503 RVRRRPDVAERVRRRIQSLNTKQPSRESYFMISDVRATADRWAVALKAKGFMHKYNIMKL 562

Query: 545 TG 546
            G
Sbjct: 563 DG 564


>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 642

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 186/551 (33%), Positives = 311/551 (56%), Gaps = 39/551 (7%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A  LF+ + +P   + +T +   +++S+    L  + +M RKG  V +   P V K+C +
Sbjct: 72  ARNLFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCAL 131

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
                +G ++H   +  G L DVFV+  L+  Y+K G M  A SVF+   +KD +  N +
Sbjct: 132 TASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSVFDEMPVKDPIPINCL 191

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM-------- 236
           + G+ + G++ KAR +FD M ++ + SW+ MI  Y    G+   A  LF+ M        
Sbjct: 192 ITGYSKAGDVDKARRLFDGMERRTSASWNSMIACY-AHGGEFREALTLFDRMLSEGARPN 250

Query: 237 ---------------------PIKDLISWN---------SMIDGYAKIGDLVAAQQLFNE 266
                                 ++DLI  +         ++++ Y K   +  A++ F+ 
Sbjct: 251 AITITSVFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHTALMEMYVKCRAIDDARREFDR 310

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326
           M +R+V +WS MI GYAQ+G P E+L LF  M     RP+ ++++G ISACAQ+G+ +L 
Sbjct: 311 MSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELV 370

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
           + I  + +  R+ +   + +ALIDMY +CG +  AR +F  M +K VI++N MI GL MN
Sbjct: 371 EQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMN 430

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
           GF E+A+  + +M   G+  +++ F+ +L AC+H+GL  +G   F+ MKR   + P++EH
Sbjct: 431 GFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEH 490

Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506
            +C+VDLL ++G L +A   +  M ++PN  +W TLL +CR H +V LA++    L+ ++
Sbjct: 491 CACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVELAKLASRKLLAME 550

Query: 507 ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFD 566
            D+  +YVLLSNIYADAG+W  A  IR +MR + ++K +  S I++DG + +F+  + + 
Sbjct: 551 PDNSSIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYSWIKLDGEVHKFLVQDTYH 610

Query: 567 VQSEELELVIQ 577
            +S E+  VI 
Sbjct: 611 PRSAEIYDVIH 621



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 167/351 (47%), Gaps = 14/351 (3%)

Query: 41  ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFY 100
           + +P  ++ L+   +     ++D+A RLF+ + +  +   N+MI  Y      ++AL+ +
Sbjct: 182 VKDPIPINCLITGYSKAG--DVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLF 239

Query: 101 VNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC 160
             M  +G   +  T   V   C     L  G  +  +++    L +V V   L+ MY KC
Sbjct: 240 DRMLSEGARPNAITITSVFSICAKSGDLDTGKRVR-DLIGEDDLQNVIVHTALMEMYVKC 298

Query: 161 GHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR 220
             +  AR  F+    +D+V+W+ ++ G+ + G   ++ E+F+ M   D     + + G  
Sbjct: 299 RAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVI 358

Query: 221 KKKGDISSARIL--------FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
                + S  ++         + +P+   +  +++ID Y + G +  A+ +F+ M ++ V
Sbjct: 359 SACAQLGSDELVEQIGNYAENQRLPLTSYLG-SALIDMYTRCGHVGRARSVFSRMEQKGV 417

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
            +W+ MI G A +G  ++A+ L+ +M   GV+P+ I+ +  ++AC   G +D G      
Sbjct: 418 ITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEE 477

Query: 333 MKRSRITMDMIVQTA-LIDMYMKCGSLDEARRIFYSM-TKKNVISYNVMIA 381
           MKR  +    +   A ++D+  K G L EA +    M  + N + +  +++
Sbjct: 478 MKREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLS 528



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 121/261 (46%), Gaps = 17/261 (6%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A R F+++ Q +    +TMI GY Q+  P ++L  +  MK      +  T   V+ A
Sbjct: 301 IDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISA 360

Query: 122 CGVLMG--LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           C  L    LVE    + E  ++      ++ + LI MY++CGH+G ARSVF   E K ++
Sbjct: 361 CAQLGSDELVEQIGNYAENQRLPLTS--YLGSALIDMYTRCGHVGRARSVFSRMEQKGVI 418

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEH 235
           +WN ++RG    G    A  ++++M     Q + I++  ++       G +      FE 
Sbjct: 419 TWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAAC-THAGLVDQGMAFFEE 477

Query: 236 MPIKDLISWN-----SMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPK 289
           M  + L+S        ++D   K G L  A +   +M  E N   W+ ++     H + +
Sbjct: 478 MKREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVE 537

Query: 290 EALYLFREMLCQGVRPDVISV 310
            A    R++L   + PD  S+
Sbjct: 538 LAKLASRKLL--AMEPDNSSI 556



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 77/203 (37%), Gaps = 31/203 (15%)

Query: 259 AAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACA 318
           AA+ LF+ +P       S  +   ++  +  + L  F  M  +G       V     +CA
Sbjct: 71  AARNLFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCA 130

Query: 319 QVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM------------------------- 353
              +   G+ +H       +  D+ V TAL+D Y                          
Sbjct: 131 LTASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSVFDEMPVKDPIPINC 190

Query: 354 ------KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407
                 K G +D+ARR+F  M ++   S+N MIA     G   EAL  F +M +EG   +
Sbjct: 191 LITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLFDRMLSEGARPN 250

Query: 408 DLIFLGVLIACSHSGLATEGYRI 430
            +    V   C+ SG    G R+
Sbjct: 251 AITITSVFSICAKSGDLDTGKRV 273


>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
 gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
 gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
 gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 545

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 185/532 (34%), Positives = 301/532 (56%), Gaps = 34/532 (6%)

Query: 14  PLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERLFNQI 72
           P++S  + +K+ T I Q  A +    L  + F+ S+L+  + T+P    +  A  + N+I
Sbjct: 41  PILSFTERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRI 100

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
             PN + HN++IR Y  SS P+ AL+ +  M    +  D Y++ FVLKAC    G  EG 
Sbjct: 101 GSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGR 160

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           +IHG  +K G + DVFV N L+ +Y + G+           EI                 
Sbjct: 161 QIHGLFIKSGLVTDVFVENTLVNVYGRSGYF----------EI----------------- 193

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA 252
               AR+V D MP +DA+SW+ ++  Y +K G +  AR LF+ M  +++ SWN MI GYA
Sbjct: 194 ----ARKVLDRMPVRDAVSWNSLLSAYLEK-GLVDEARALFDEMEERNVESWNFMISGYA 248

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV-RPDVISVM 311
             G +  A+++F+ MP R+V SW+ M+  YA  G   E L +F +ML     +PD  +++
Sbjct: 249 AAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLV 308

Query: 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
             +SACA +G+L  G+W+HV++ +  I ++  + TAL+DMY KCG +D+A  +F + +K+
Sbjct: 309 SVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKR 368

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           +V ++N +I+ L ++G G++AL+ F++M  EG   + + F+GVL AC+H G+  +  ++F
Sbjct: 369 DVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGMLDQARKLF 428

Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN 491
           + M     +EP +EHY C+VDLL R G++E+A  +V  +P      L  +LL AC+    
Sbjct: 429 EMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPADEASILLESLLGACKRFGQ 488

Query: 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
           +  AE +   L+EL   D   Y  +SN+YA  G WE  +  R+ MR  ++ +
Sbjct: 489 LEQAERIANRLLELNLRDSSGYAQMSNLYASDGRWEKVIDGRRNMRAERVNR 540


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 190/513 (37%), Positives = 307/513 (59%), Gaps = 13/513 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A R+F+++ + N    N ++  Y Q+S  ++A   + + +   L+  N         
Sbjct: 168 VDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWN--------- 218

Query: 122 CGVLMGLVEGTEI--HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           C +L G V+  +I    +      + DV   N +I  Y++ G +  AR +F+ S + D+ 
Sbjct: 219 C-LLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVF 277

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239
           +W  ++ G+++   + +ARE+FD MP+++ +SW+ M+ GY + +  +  A+ LF+ MP +
Sbjct: 278 TWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGE-RVEMAKELFDVMPCR 336

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           ++ +WN+MI GYA+ G +  A+ LF++MP+R+  SW+ MI GY+Q G+  EAL LF  M 
Sbjct: 337 NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLME 396

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
            +G R +  S   A+S CA V AL+LGK +H  + +        V  AL+ MY KCGS++
Sbjct: 397 REGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIE 456

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           EA  +F  M  K+++S+N MIAG   +GFGEEAL+ F  M+ EG+  DD   + VL ACS
Sbjct: 457 EANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACS 516

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           H+GL  +G + F +M +  G+ P  +HY+C+VDLL RAG LE+A N++++MP +P+ A+W
Sbjct: 517 HTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIW 576

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
           GTLL A R H N  LAE   + +  ++ ++ G+YVLLSN+YA +G W    ++R  MR +
Sbjct: 577 GTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDK 636

Query: 540 KIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            +KK  G S IEI      F  G+ F  + +E+
Sbjct: 637 GVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEI 669



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 122/486 (25%), Positives = 213/486 (43%), Gaps = 81/486 (16%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           +A R+F ++ + ++  +N MI GY ++   + A   +  M  +                 
Sbjct: 77  EALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPER----------------- 119

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
                                 D+   N +I  Y +  ++G AR +FE    +D+ SWN 
Sbjct: 120 ----------------------DLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNT 157

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK---------------------- 221
           +L G+ + G +  AR VFD MP+K+ +SW+ ++  Y +                      
Sbjct: 158 ILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSW 217

Query: 222 --------KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
                   KK  I  AR  F+ M ++D++SWN++I GYA+ G++  A+QLF+E P  +VF
Sbjct: 218 NCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVF 277

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
           +W+ M+ GY Q+   +EA  LF  M       + +S    ++   Q   +++ K +   M
Sbjct: 278 TWTAMVSGYIQNRMVEEARELFDRM----PERNEVSWNAMLAGYVQGERVEMAKELFDVM 333

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
               ++        +I  Y +CG + EA+ +F  M K++ +S+  MIAG   +G   EAL
Sbjct: 334 PCRNVS----TWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEAL 389

Query: 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
           + F  ME EG   +   F   L  C+   +A E  +         G E      + L+ +
Sbjct: 390 RLFVLMEREGGRLNRSSFSSALSTCADV-VALELGKQLHGRLVKGGYETGCFVGNALLLM 448

Query: 454 LSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE--LKADDCG 511
             + G +E+A ++ + M  K ++  W T++     H     A    E +    LK DD  
Sbjct: 449 YCKCGSIEEANDLFKEMAGK-DIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDAT 507

Query: 512 LYVLLS 517
           +  +LS
Sbjct: 508 MVAVLS 513



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 162/348 (46%), Gaps = 59/348 (16%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D+   N  I  Y + G    A  VF+       VS+N ++ G++  GE   AR +FDEMP
Sbjct: 58  DIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMP 117

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
           ++D +SW++MI GY + + ++  AR LFE MP +D+ SWN+++ GYA+ G +  A+++F+
Sbjct: 118 ERDLVSWNVMIKGYVRNR-NLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFD 176

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLF---------------------------REM 298
            MPE+N  SW+ ++  Y Q+   +EA  LF                           R+ 
Sbjct: 177 RMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQF 236

Query: 299 LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
                  DV+S    I+  AQ G +D  +   +F +      D+   TA++  Y++   +
Sbjct: 237 FDSMKVRDVVSWNTIITGYAQNGEIDEAR--QLFDESP--VHDVFTWTAMVSGYIQNRMV 292

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGI-------------- 404
           +EAR +F  M ++N +S+N M+AG       E A + F  M    +              
Sbjct: 293 EEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCG 352

Query: 405 ------------PKDDLIFLGVLIA-CSHSGLATEGYRIFQSMKRHCG 439
                       PK D +    +IA  S SG + E  R+F  M+R  G
Sbjct: 353 KISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGG 400



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 180/371 (48%), Gaps = 27/371 (7%)

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           D+  WN+ +  ++  G   +A  VF  MP+  ++S++ MI GY  + G+   AR+LF+ M
Sbjct: 58  DIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGY-LRNGEFELARMLFDEM 116

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
           P +DL+SWN MI GY +  +L  A++LF  MPER+V SW+ ++ GYAQ+G   +A  +F 
Sbjct: 117 PERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFD 176

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
            M       + +S    +SA  Q   L+        +  SR    ++    L+  ++K  
Sbjct: 177 RM----PEKNDVSWNALLSAYVQNSKLEEA----CVLFGSRENWALVSWNCLLGGFVKKK 228

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
            + EAR+ F SM  ++V+S+N +I G   NG  +EA + F     E    D   +  ++ 
Sbjct: 229 KIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLF----DESPVHDVFTWTAMVS 284

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
               + +  E   +F  M     +      ++ ++    +   +E A  + + MP + N+
Sbjct: 285 GYIQNRMVEEARELFDRMPERNEVS-----WNAMLAGYVQGERVEMAKELFDVMPCR-NV 338

Query: 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
           + W T++        ++ A+ + + +   K D      +++  Y+ +G    ALR+  +M
Sbjct: 339 STWNTMITGYAQCGKISEAKNLFDKMP--KRDPVSWAAMIAG-YSQSGHSYEALRLFVLM 395

Query: 537 RKRKIKKETGR 547
                ++E GR
Sbjct: 396 -----EREGGR 401



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 101/215 (46%), Gaps = 18/215 (8%)

Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328
           + ++  W++ I  Y + G   EAL +F+ M     R   +S    IS   + G  +L + 
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRM----PRWSSVSYNAMISGYLRNGEFELARM 111

Query: 329 IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
           +   M       D++    +I  Y++  +L +AR +F  M +++V S+N +++G   NG 
Sbjct: 112 LFDEMPER----DLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGC 167

Query: 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
            ++A + F +M      K+D+ +  +L A   +    E   +F S +        L  ++
Sbjct: 168 VDDARRVFDRMP----EKNDVSWNALLSAYVQNSKLEEACVLFGSRENWA-----LVSWN 218

Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
           CL+    +  ++ +A    +SM ++ ++  W T++
Sbjct: 219 CLLGGFVKKKKIVEARQFFDSMKVR-DVVSWNTII 252



 Score = 45.4 bits (106), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++++A  LF ++   +    NTMI GY++    ++AL F+ +MKR+GL  D+ T   VL 
Sbjct: 454 SIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLS 513

Query: 121 ACGVLMGLVE 130
           AC    GLV+
Sbjct: 514 ACS-HTGLVD 522


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 193/558 (34%), Positives = 304/558 (54%), Gaps = 66/558 (11%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           ++SLLQ SK    +L I AQL  N    +PF + +LL S +  + +  D A R+F   + 
Sbjct: 52  IISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAI--DYASRIFQYTHN 109

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           PN Y++  +I G+  S N   A+  Y  M    +L DNY    +LKACG  + L EG E+
Sbjct: 110 PNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREV 169

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           H   +K+G   +  V   ++ +Y K                               CGE+
Sbjct: 170 HSRALKLGLSSNRLVRLRIMELYGK-------------------------------CGEL 198

Query: 195 GKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKI 254
           G AR V                                FE MP +D+++   MI  Y+  
Sbjct: 199 GDARRV--------------------------------FEEMP-EDVVASTVMISSYSDQ 225

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
           G +  A  +F+ +  ++   W+ MIDG+ ++     AL  FR M  + VRP+  +++  +
Sbjct: 226 GLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVL 285

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
           SAC+Q+GAL++G+W+H +M++  I +++ V  ALI+MY +CGS+DEA+ +F  M  ++VI
Sbjct: 286 SACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVI 345

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434
           +YN MI+GL MNG   +A++ F  M    +   ++ F+GVL ACSH GL   G++IF SM
Sbjct: 346 TYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSM 405

Query: 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTL 494
            R  G+EP++EHY C+VDLL R G LE+A +++ +M M P+  + GTLL AC+ H+N+ L
Sbjct: 406 TRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLEL 465

Query: 495 AEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDG 554
            E V + L +    D G YVLLS++YA +G W+ A ++R  M++  ++KE G S IE++ 
Sbjct: 466 GEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNN 525

Query: 555 NIKEFVSGEIFDVQSEEL 572
            I EF+ G++   + E +
Sbjct: 526 EIHEFLLGDLRHPRKERI 543


>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
          Length = 632

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 218/608 (35%), Positives = 323/608 (53%), Gaps = 59/608 (9%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLM--SLTSPNTLNMDQAERL 68
           + +PL+SLL+   +   +LQ+ A LT   L    F     L   +L++P  L    A   
Sbjct: 34  VTHPLLSLLESCASFRRLLQLHALLTVTGLAGNGFPAFGFLAFCALSTPPRLAHAAAILA 93

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM-- 126
                 PN YM  TM+RG+ ++  P +AL  +  + R  L  D  T+ F +KA       
Sbjct: 94  RASP-GPNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAES 152

Query: 127 ---GLVEGTE-IHGEVVKMGFLCD-VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
              G   G E IH   +K GF+ + V V N L+  Y+    +  A  VF+    +D+VSW
Sbjct: 153 EHGGTPSGGEAIHCAALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSW 212

Query: 182 NLVLRGFVECGEMGKAREVFDEM--------------------PQKDAISWSIMIDGYRK 221
             ++ G+   G   +A  +F  M                     Q   +++ IM+  Y  
Sbjct: 213 TTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVT 272

Query: 222 -------------------KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQ 262
                              K G +  AR +F+ M +KD+ SW SM++ YAK GDL +A+Q
Sbjct: 273 EGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQ 332

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           LF +MP RNV SWS MI  Y+Q   P+EA++LFREM+  GV P   +++  +SACAQ+G 
Sbjct: 333 LFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGC 392

Query: 323 LDLGKWIHV-FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
           LDLG+WI+  ++  ++I + + +  ALIDM+ KCG + EA ++F  M ++NV+S+N MI 
Sbjct: 393 LDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIM 452

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
              ++G  EEA++ F Q++ E I  D + FLG+L +CSHSGL +EG R F+ M+    IE
Sbjct: 453 AHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIE 512

Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEG 501
           P++EHY+C++DLL + G LE+A  +   MPM+ + A WG LL ACR H NV +   V + 
Sbjct: 513 PRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACVADK 572

Query: 502 LVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
           LVEL   D G+YVL+S IYA    W+    +R  MR R            +DG   E + 
Sbjct: 573 LVELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGTV---------LDGIATELLL 623

Query: 562 GEIFDVQS 569
           GE   +QS
Sbjct: 624 GEPDPLQS 631


>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 593

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 187/563 (33%), Positives = 313/563 (55%), Gaps = 39/563 (6%)

Query: 53  SLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDN 112
           S  +P       A  LF+ + +P   + +T +   +++S+    L  + +M RKG  V +
Sbjct: 11  SRRAPPATTSRAARNLFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPS 70

Query: 113 YTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG 172
              P V K+C +     +G ++H   +  G L DVFV+  L+  Y+K G M  A S F+ 
Sbjct: 71  GCVPLVFKSCALTASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSAFDE 130

Query: 173 SEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARIL 232
             +KD +  N ++ G+ + G++ KAR +FD M ++ + SW+ MI  Y    G+   A  L
Sbjct: 131 MPVKDPIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACY-AHGGEFREALAL 189

Query: 233 FEHM-----------------------------PIKDLISWN---------SMIDGYAKI 254
           F+ M                              ++DLI  +         ++++ Y K 
Sbjct: 190 FDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHTALMEMYVKC 249

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
             +  A++ F+ M +R+V +WS MI GYAQ+G P E+L LF  M     RP+ ++++G I
Sbjct: 250 RAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVI 309

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
           SACAQ+G+ +L + I  + +  R+ +   + +ALIDMY +CG +  AR +F  M +K VI
Sbjct: 310 SACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVI 369

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434
           ++N MI GL MNGF E+A+  + +M   G+  +++ F+ +L AC+H+GL  +G   F+ M
Sbjct: 370 TWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEM 429

Query: 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTL 494
           KR   + P++EH +C+VDLL ++G L +A   +  M ++PN  +W TLL +CR H +V L
Sbjct: 430 KREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVEL 489

Query: 495 AEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDG 554
           A++    L+ ++ D+  +YVLLSNIYADAG+W  A  IR +MR + ++K +  S I++DG
Sbjct: 490 AKLASRKLLAMEPDNSSIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYSWIKLDG 549

Query: 555 NIKEFVSGEIFDVQSEELELVIQ 577
            + +F+  + +  +S E+  VI 
Sbjct: 550 EVHKFLVQDTYHPRSAEIYDVIH 572


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 203/528 (38%), Positives = 303/528 (57%), Gaps = 18/528 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ A  LF+++ +P+    N+MI G   +      L  ++ M   G+ VD  T   VL A
Sbjct: 246 VESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVA 305

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  +  L  G  +HG  VK  F  +V   N L+ MYSKCG++  A  VF       +VSW
Sbjct: 306 CANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSW 365

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK---------DAISWSIMIDGYRKKKGDISSARI- 231
             ++  +V  G    A  +FDEM  K          +I  +        K  D+ S  I 
Sbjct: 366 TSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIK 425

Query: 232 --LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
             +  ++P+      N++I+ YAK G +  A+ +F+++P +++ SW+ MI GY+Q+  P 
Sbjct: 426 NGMGSNLPVT-----NALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPN 480

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           EAL LF +M  Q  +PD I++   + ACA + ALD G+ IH  + R     D+ V  AL+
Sbjct: 481 EALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALV 539

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           DMY KCG L  A+ +F  + KK++IS+ VMIAG GM+GFG EA+  F +M   GI  D+ 
Sbjct: 540 DMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDES 599

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            F  +L ACSHSGL  EG++ F SM+  CG+EPKLEHY+C+VDLL+R G L +A   +ES
Sbjct: 600 SFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIES 659

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           MP+KP+  +WG LL  CR H +V LAE V E + EL+ D+   YV+L+N+YA+A  WE  
Sbjct: 660 MPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEV 719

Query: 530 LRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
            ++RK M+KR  K+  G S IE+ G    FV+G     Q++++++++ 
Sbjct: 720 KKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLS 767



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/435 (30%), Positives = 233/435 (53%), Gaps = 14/435 (3%)

Query: 58  NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF 117
           N  ++ Q  ++F++I     ++ N ++  Y +  N ++++S +  M++ G++ + YT+  
Sbjct: 141 NCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTC 200

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           VLK    L  + E   +HG V+K+GF  +  VVN LI  Y K G +  A ++F+     D
Sbjct: 201 VLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPD 260

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEM----PQKDAISW-SIMIDGYRKKKGDISSARIL 232
           +VSWN ++ G V  G  G   E+F +M     + D  +  S+++       G++S  R L
Sbjct: 261 VVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAC--ANIGNLSLGRAL 318

Query: 233 ----FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNP 288
                +    ++++  N+++D Y+K G+L  A ++F +M +  + SW+ +I  Y + G  
Sbjct: 319 HGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLY 378

Query: 289 KEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTAL 348
            +A+ LF EM  +GVRPD+ +V   + ACA   +LD G+ +H ++ ++ +  ++ V  AL
Sbjct: 379 SDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNAL 438

Query: 349 IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD 408
           I+MY KCGS++EAR +F  +  K+++S+N MI G   N    EAL+ F  M+ +  P DD
Sbjct: 439 INMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQFKP-DD 497

Query: 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468
           +    VL AC+      +G  I   + R  G    L     LVD+ ++ G L  A  + +
Sbjct: 498 ITMACVLPACAGLAALDKGREIHGHILRR-GYFSDLHVACALVDMYAKCGLLVLAQLLFD 556

Query: 469 SMPMKPNLALWGTLL 483
            +P K +L  W  ++
Sbjct: 557 MIP-KKDLISWTVMI 570



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 102/434 (23%), Positives = 203/434 (46%), Gaps = 35/434 (8%)

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           F       T   N  I  + +  + + A+      K   L +++Y    VL+ C     L
Sbjct: 53  FTNTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCS--VLQLCAEKKSL 110

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
            +G  +H  ++  G   D  +   L+ MY  CG +   R +F+      +  WNL++  +
Sbjct: 111 EDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEY 170

Query: 189 VECGEMGKAREVFDEMPQ----KDAISWSIM---------------IDGYRKKKGDISSA 229
            + G   ++  +F +M +     +  +++ +               + GY  K G  S+ 
Sbjct: 171 AKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNT 230

Query: 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
            ++            NS+I  Y K G + +A  LF+E+ E +V SW+ MI+G   +G   
Sbjct: 231 AVV------------NSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSG 278

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
             L +F +ML  GV  D+ +++  + ACA +G L LG+ +H F  ++  + +++    L+
Sbjct: 279 NGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLL 338

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           DMY KCG+L+ A  +F  M    ++S+  +IA     G   +A+  F +M+++G+  D  
Sbjct: 339 DMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIY 398

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
               ++ AC+ S    +G  +   + ++ G+   L   + L+++ ++ G +E+A  +   
Sbjct: 399 TVTSIVHACACSSSLDKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLVFSK 457

Query: 470 MPMKPNLALWGTLL 483
           +P+K ++  W T++
Sbjct: 458 IPVK-DIVSWNTMI 470



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 174/351 (49%), Gaps = 11/351 (3%)

Query: 41  ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFY 100
            +E    S  L+ + S    N++ A  +F ++         ++I  Y +      A+  +
Sbjct: 327 FSEEVVFSNTLLDMYS-KCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLF 385

Query: 101 VNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC 160
             M+ KG+  D YT   ++ AC     L +G ++H  V+K G   ++ V N LI MY+KC
Sbjct: 386 DEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKC 445

Query: 161 GHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK---DAISWSIMID 217
           G +  AR VF    +KD+VSWN ++ G+ +     +A E+F +M ++   D I+ + ++ 
Sbjct: 446 GSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQFKPDDITMACVLP 505

Query: 218 GYRKKKGDISSARILFEHM----PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
                   +   R +  H+       DL    +++D YAK G LV AQ LF+ +P++++ 
Sbjct: 506 ACAGLAA-LDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLI 564

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVF 332
           SW++MI GY  HG   EA+  F EM   G+ PD  S    ++AC+  G L+ G K+ +  
Sbjct: 565 SWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSM 624

Query: 333 MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAG 382
                +   +     ++D+  + G+L +A +   SM  K +   + V+++G
Sbjct: 625 RNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSG 675



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 96/208 (46%), Gaps = 4/208 (1%)

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338
           I+ + + G+ + A+ L  +   +     + S    +  CA+  +L+ GK +H  +  + I
Sbjct: 68  INKFCEMGDLRNAIELLTKS--KSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGI 125

Query: 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
           ++D  +   L+ MY+ CG L + R+IF  +    V  +N++++     G   E++  F +
Sbjct: 126 SVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKK 185

Query: 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458
           M+  G+  +   F  VL   +  G   E  R+   + +  G        + L+    + G
Sbjct: 186 MQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLK-LGFGSNTAVVNSLIAAYFKFG 244

Query: 459 ELEQALNIVESMPMKPNLALWGTLLLAC 486
            +E A N+ + +  +P++  W +++  C
Sbjct: 245 GVESAHNLFDELS-EPDVVSWNSMINGC 271


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 212/576 (36%), Positives = 319/576 (55%), Gaps = 18/576 (3%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIY- 73
           LV L +   +T  + Q+  Q+  N  I  P   +  L+S  + +  N   +  LF+ I  
Sbjct: 27  LVFLAKQCSSTKTLQQVHTQMVVNSSIHTP---NNHLLS-KAIHLKNFPYSSLLFSHIAP 82

Query: 74  QPNTYMHNTMIRGYTQS-SNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
            PN Y  N MIR  T +  N   ALS +  M    L  DN+T+PF   +C  L  L    
Sbjct: 83  HPNDYAFNIMIRALTTTWHNYPLALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSHAC 142

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
             H  + K+    D    + LI  Y++CG +  AR VF+    +D VSWN ++ G+ + G
Sbjct: 143 AAHSLLFKLALHSDPHTAHSLITAYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAG 202

Query: 193 EMGKAREVFDEMPQKDAISWSIM----IDGYRKKKGDISSAR-----ILFEHMPIKDLIS 243
              +A EVF EM ++D      M    + G   + GD+   R     ++   M +   I 
Sbjct: 203 CAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVERGMTLNSYIG 262

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
            +++I  YAK G+L +A+++F+ M  R+V +W+ +I GYAQ+G   EA+ LF  M    V
Sbjct: 263 -SALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLFHGMKEDCV 321

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
             + I++   +SACA +GALDLGK I  +  +     D+ V TALIDMY K GSLD A+R
Sbjct: 322 TANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKSGSLDNAQR 381

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG--IPKDDLIFLGVLIACSHS 421
           +F  M +KN  S+N MI+ L  +G  +EAL  F  M  EG     +D+ F+G+L AC H+
Sbjct: 382 VFKDMPQKNEASWNAMISALAAHGKAKEALSLFQHMSDEGGGARPNDITFVGLLSACVHA 441

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           GL  EGYR+F  M    G+ PK+EHYSC+VDLL+RAG L +A +++  MP KP+    G 
Sbjct: 442 GLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIRKMPEKPDKVTLGA 501

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           LL ACR+ +NV + E V+  ++E+   + G Y++ S IYA+  MWE + R+R +MR++ I
Sbjct: 502 LLGACRSKKNVDIGERVMRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGI 561

Query: 542 KKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
            K  G S IE++ ++ EF +G+   + S +L  +I 
Sbjct: 562 TKTPGCSWIEVENHLHEFHAGDGLCLDSIDLSNIID 597


>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
          Length = 549

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 201/531 (37%), Positives = 303/531 (57%), Gaps = 35/531 (6%)

Query: 33  AQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSN 92
           AQ+  + L  E  TL +L+      +  ++  A+R+F+QI QPN +M+N++IRGY+ S +
Sbjct: 9   AQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDD 68

Query: 93  PQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNG 152
           P  A+  +  M   GL  + +T PFVLKACG      E   +HG  +K+G    VFV N 
Sbjct: 69  PIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNA 128

Query: 153 LIGMYSKCGHMGCARSVFEGSEIK---DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA 209
           LI +Y  CG + CAR +F+    K   D++  N ++  + +CG +  A+ +FD   +K+ 
Sbjct: 129 LIAVYVVCGLIHCARKLFDDITDKTLIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNV 188

Query: 210 ISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269
           +SW+ MI  Y  + G I  AR +F+ MP K+++SWNSMI  Y + G              
Sbjct: 189 VSWTSMISAY-AQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQY------------ 235

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329
                              +EAL LF +M    V PD  +++  ++AC+Q+G L +GK I
Sbjct: 236 -------------------REALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKI 276

Query: 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFG 389
           H ++  ++    + +  +LIDMY KCG +  A  IF  M  KN++S+NV+I  L ++G G
Sbjct: 277 HNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCG 336

Query: 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449
            EA+K F +M+ +G   D++   G+L ACSHSGL   G   F  M     +  ++EHY+C
Sbjct: 337 LEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYAC 396

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509
           +VDLL R G L +A+ ++  MPMKP++ +WG LL ACR H NV + + +++ L+EL+   
Sbjct: 397 MVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHS 456

Query: 510 CGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
            GLYVL+SNIY +A  WE   +IRK+M  R IKK    S IEIDG I EF+
Sbjct: 457 GGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFM 507


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 195/561 (34%), Positives = 302/561 (53%), Gaps = 57/561 (10%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK----------GLLV 110
           N++ A   F  +    T  +N ++ GY ++  P  AL  +  M  +          GL +
Sbjct: 32  NIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSL 91

Query: 111 DNYTYPFVLKACGVLM---GLVEGTEIHGEVVKMGFLCDVFVV------------NGLIG 155
              T P    A   +     +V  T +    V+ G L D   +              L+G
Sbjct: 92  RRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLG 151

Query: 156 MYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIM 215
                G +  AR +F+    +D+V+W  +L G+ + G + +AR +FDEMP+++ +SW+ M
Sbjct: 152 GLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAM 211

Query: 216 IDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE------ 269
           I GY  + G+++ AR LFE MP ++ +SW +M+ GY + G +  A +LFN MPE      
Sbjct: 212 ISGY-AQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAAC 270

Query: 270 ----------------RNVF---------SWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
                           + VF         +WS MI  Y Q+    EAL  FREML +GVR
Sbjct: 271 NAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVR 330

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           P+  SV+  ++ CA +  LD G+ +H  M R    MD+   +ALI MY+KCG+LD+A+R+
Sbjct: 331 PNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRV 390

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F++   K+++ +N MI G   +G GE+AL  F  M   G+  D + ++G L ACS++G  
Sbjct: 391 FHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKV 450

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            EG  IF SM  +  I P  EHYSC+VDLL R+G +E+A +++++MP++P+  +WG L+ 
Sbjct: 451 KEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMG 510

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           ACR H+N  +AEV  + L+EL+  + G YVLLS+IY   G WE A ++RK +  R + K 
Sbjct: 511 ACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKS 570

Query: 545 TGRSVIEIDGNIKEFVSGEIF 565
            G S IE D  +  F SG++ 
Sbjct: 571 PGCSWIEYDKRVHLFTSGDVL 591



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 173/403 (42%), Gaps = 75/403 (18%)

Query: 151 NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAI 210
           N  I   ++ G++  AR+ FE   ++   S+N +L G+        A  +F  MP +D  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 211 SWSIMIDGYRKKK--------------------------------GDISSARILFEHMPI 238
           S++ +I G   ++                                G ++ A  LF+ MP 
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
           ++ +S+  ++ G    G +  A++LF+EMP+R+V +W+ M+ GY Q G   EA  LF EM
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 299 LCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
                + +V+S    IS  AQ G ++L  K   V  +R+ ++      TA++  Y++ G 
Sbjct: 201 ----PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSW-----TAMLVGYIQAGH 251

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNG------------------------------ 387
           +++A  +F +M +  V + N M+ G G  G                              
Sbjct: 252 VEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQN 311

Query: 388 -FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
            F  EAL  F +M   G+  +    + +L  C+   +   G  +  +M R C  +  +  
Sbjct: 312 EFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLR-CSFDMDVFA 370

Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
            S L+ +  + G L++A  +  +   K ++ +W +++     H
Sbjct: 371 VSALITMYIKCGNLDKAKRVFHTFEPK-DIVMWNSMITGYAQH 412



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 137/318 (43%), Gaps = 50/318 (15%)

Query: 222 KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           + G+I  AR  FE MP++   S+N+++ GY +     AA  LF  MP R++ S++ +I G
Sbjct: 29  RAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISG 88

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
                     L L R+ L     PD  + + +I     V                     
Sbjct: 89  ----------LSLRRQTL-----PDAAAALASIPFPPSV--------------------- 112

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
            +  T+L+  Y++ G L +A R+F  M ++N +SY V++ GL   G   EA + F +M  
Sbjct: 113 -VSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPD 171

Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
               +D + +  +L     +G  TE   +F  M +   +      ++ ++   ++ GE+ 
Sbjct: 172 ----RDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVS-----WTAMISGYAQNGEVN 222

Query: 462 QALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521
            A  + E MP + N   W  +L+      +V  A  +   + E     C   ++    + 
Sbjct: 223 LARKLFEVMPER-NEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMV---GFG 278

Query: 522 DAGMWEHALRIRKMMRKR 539
             GM + A  + + MR+R
Sbjct: 279 QRGMVDAAKTVFEKMRER 296


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 199/579 (34%), Positives = 327/579 (56%), Gaps = 49/579 (8%)

Query: 45  FTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMK 104
           F+ + +L +LT    L  D+A  LF  + + +    N M+ G+ Q    ++AL F V+M 
Sbjct: 86  FSWNAVLGALTKFGAL--DEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMH 143

Query: 105 RKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG 164
            +  +++ Y++   L AC  LM L  G +IHG + K  +  DV++ + L+ MYSKC  + 
Sbjct: 144 SEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVA 203

Query: 165 CARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVF----------DEMP--------- 205
            A+  F+  +++++VSWN ++  + + G  GKA EVF          DE+          
Sbjct: 204 SAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACA 263

Query: 206 ---------------------QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
                                + D +  + ++D Y K +  ++ AR++F+ MP++D++S 
Sbjct: 264 SLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCR-RVNEARLVFDRMPLRDVVSE 322

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
            SM+ GYAK   + AA+ +F+ M ERNV SW+ +I GY Q+G  +EA+ LF  +  + + 
Sbjct: 323 TSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIW 382

Query: 305 PDVISVMGAISACAQVGALDLGKWIHV------FMKRSRITMDMIVQTALIDMYMKCGSL 358
           P   +    ++ACA +  L LG+  H       F  +S    D+ V  +LIDMYMKCG +
Sbjct: 383 PTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLV 442

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
           ++ R +F  M +++ +S+N MI G   NG+G EAL+ F +M   G   D +  +GVL AC
Sbjct: 443 EDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSAC 502

Query: 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
           SH+GL  EG   FQSM    G+ P  +HY+C+VDLL RAG L++A N++++MPM+P+  +
Sbjct: 503 SHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVV 562

Query: 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
           WG+LL AC+ H N+TL + V E L+E+   + G YVLLSN+YA+ G W+  +R+RK MR+
Sbjct: 563 WGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQ 622

Query: 539 RKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
             + K+ G S I I  ++  F+  +      +++ L+++
Sbjct: 623 MGVIKQPGCSWISIQSHLHVFMVKDKRHPHKKDIYLILK 661



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 118/471 (25%), Positives = 213/471 (45%), Gaps = 77/471 (16%)

Query: 109 LVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARS 168
            +D+  +  +L  C     + E   +H  ++K  F  ++F+ N L+ +Y KCG +  AR 
Sbjct: 16  FLDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARK 75

Query: 169 VFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS 228
           VF+  + ++  SWN VL    + G + +A  +F  MP++D  SW+ M+ G+ ++     +
Sbjct: 76  VFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEA 135

Query: 229 ARILFE--------------------------------HMPIK------DLISWNSMIDG 250
            R + +                                H  I       D+   ++++D 
Sbjct: 136 LRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDM 195

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           Y+K   + +AQ+ F++M  RN+ SW+ +I  Y Q+G   +AL +F  M+  G+ PD I++
Sbjct: 196 YSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITL 255

Query: 311 MGAISACAQVGALDLGKWIHV-FMKRSRITMDMIVQTALIDMYMKCGSLDEARRI----- 364
               SACA + A+  G  IH   MK  +   D+++  AL+DMY KC  ++EAR +     
Sbjct: 256 ASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMP 315

Query: 365 --------------------------FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
                                     F +M ++NV+S+N +IAG   NG  EEA++ F  
Sbjct: 316 LRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLL 375

Query: 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRH-----CGIEPKLEHYSCLVDL 453
           ++ E I      F  +L AC++      G +    + +H      G +  +   + L+D+
Sbjct: 376 LKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDM 435

Query: 454 LSRAGELEQALNIVESMPMKPNLALWGTLLLA-CRNHQNVTLAEVVVEGLV 503
             + G +E    + E M  + N++ W  +++   +N       E+  E LV
Sbjct: 436 YMKCGLVEDGRLVFERMLERDNVS-WNAMIVGYAQNGYGTEALEIFREMLV 485


>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 179/462 (38%), Positives = 279/462 (60%), Gaps = 33/462 (7%)

Query: 112 NYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE 171
           ++T+  ++KAC ++  L  G  +HG + K GF   VFV   L+  Y   G          
Sbjct: 10  SFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAG---------- 59

Query: 172 GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI 231
                                ++ +AR VFDEM ++D  +W+ MI     + GD+SSAR 
Sbjct: 60  ---------------------KIVEARRVFDEMSERDVFAWTTMIS-VHARTGDMSSARQ 97

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           LF+ MP+++  SWN+MIDGY+++ ++ +A+ LF++MP R++ SW+ MI  Y+Q+   +EA
Sbjct: 98  LFDEMPVRNTASWNAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREA 157

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           L +F EM   G+ PD +++   ISACA +GALDLGK IH++       +D+ + +ALIDM
Sbjct: 158 LAVFNEMQTNGIDPDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDM 217

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y KCGSLD++  +F+ + KKN+  +N +I GL ++G+ EEAL  F++M+ E I  + + F
Sbjct: 218 YAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTF 277

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           + VL AC+H+GL  EG + F SM R   I P++EHY C+VDLL +AG LE AL +V SM 
Sbjct: 278 ISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMR 337

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           M+PN  +WG LL  C+ H+N+ +A+V V     L+ ++ G Y LL N+YA+   W     
Sbjct: 338 MEPNSVIWGALLGGCKLHRNLKIAQVAVNESKVLEPNNSGYYTLLVNMYAEVNRWSEVAN 397

Query: 532 IRKMMRKRKIKKET-GRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           IR  M++  ++K + G S IE+D  I +F + +   + S+E+
Sbjct: 398 IRATMKELGVEKTSPGSSWIEMDRKIHQFAASDKSHLASDEI 439



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 112/241 (46%), Gaps = 11/241 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N++ AE LF+Q+   +     TMI  Y+Q+   ++AL+ +  M+  G+  D  T   ++ 
Sbjct: 122 NVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIIS 181

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L  G EIH   ++MGF  DV++ + LI MY+KCG +  +  VF     K+L  
Sbjct: 182 ACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFC 241

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWS----IMIDGYRKKKGDISSARILFEHM 236
           WN ++ G    G   +A  +F  M Q++ I  +    I + G     G +   R  F  M
Sbjct: 242 WNSIIEGLAVHGYAEEALAMFSRM-QREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSM 300

Query: 237 P-----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKE 290
                   ++  +  M+D   K G L  A +L   M  E N   W  ++ G   H N K 
Sbjct: 301 SRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNLKI 360

Query: 291 A 291
           A
Sbjct: 361 A 361



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 28/191 (14%)

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
           M+   V P   +    + AC+ V  L  G+ +H  + +      + VQTAL+D Y   G 
Sbjct: 1   MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGK 60

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG-------------- 403
           + EARR+F  M++++V ++  MI+     G    A + F +M                  
Sbjct: 61  IVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRL 120

Query: 404 ------------IPKDDLIFLGVLIAC-SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
                       +P  D+I    +IAC S +    E   +F  M+ + GI+P     + +
Sbjct: 121 RNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTN-GIDPDEVTMATI 179

Query: 451 VDLLSRAGELE 461
           +   +  G L+
Sbjct: 180 ISACAHLGALD 190


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 192/551 (34%), Positives = 309/551 (56%), Gaps = 41/551 (7%)

Query: 48  SQLLMSLTS-PNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK 106
           SQ+L S  + P    +  A +LF++I  P+ +++N++IR Y  S  PQ+AL     M R+
Sbjct: 45  SQILASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRR 104

Query: 107 GLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCA 166
           G+L + +T PF+LKAC  +         HG VVK+GF+  VFV N L+  Y+  G +G +
Sbjct: 105 GILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDS 164

Query: 167 RSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK------------------- 207
           R  F+    +++VSWN ++ G+ + G   +A  +F+ M ++                   
Sbjct: 165 RRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAE 224

Query: 208 --------------------DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM 247
                               D I  + ++D Y  K GD+  A   F+ MP K+ +SW SM
Sbjct: 225 GNLEFGKLVHSHLLVRGCRIDLILANALVDMY-GKCGDLLMAHTCFDMMPFKNAVSWTSM 283

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           +   AK   + AA+  F ++PE+++ SW+ MI  Y Q G   EAL L+  M   G+ PD 
Sbjct: 284 LCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDE 343

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
            ++   +SAC Q+G L  GK IH  ++ +     + +  +L+DMY +CG +D A  +F  
Sbjct: 344 FTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSE 403

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           M  KNVIS+N +I  L M+G  ++AL  F  M ++  P D++ F+ +L AC+H GL   G
Sbjct: 404 MPSKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAG 463

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
              FQ+M+    ++P +EHY+C+VDLL R G+L +A+++++ MPM+P++ +WG LL ACR
Sbjct: 464 QYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACR 523

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
            H ++ + + V++ L+EL+    GL+VL+SN+  +   WE   R+RK+MR+  +KK  G 
Sbjct: 524 IHGHIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGV 583

Query: 548 SVIEIDGNIKE 558
           S IE + NI E
Sbjct: 584 SSIETNSNIHE 594



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 199/419 (47%), Gaps = 49/419 (11%)

Query: 27  HILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRG 86
           H++     +     + + F  + LL S  S  +L    + R F+++   N    N+MI G
Sbjct: 128 HVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLG--DSRRFFDEMVDRNVVSWNSMING 185

Query: 87  YTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCD 146
           Y Q+ N ++A S +  M+R+GLL D +T   +L AC     L  G  +H  ++  G   D
Sbjct: 186 YAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRID 245

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
           + + N L+ MY KCG +  A + F+    K+ VSW  +L    +   +  AR+ F+++P+
Sbjct: 246 LILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPE 305

Query: 207 KDAISWSIMI-------------DGYRKKK---------------------GDISSARIL 232
           K  ISW+ MI             D Y + K                     GD++S +++
Sbjct: 306 KSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMI 365

Query: 233 FEHMPIKD------LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
             H  I+D      +  +NS++D YA+ G +  A  LF+EMP +NV SW+ +I   A HG
Sbjct: 366 --HDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHG 423

Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
             ++AL  FR M+     PD I+ +  +SAC   G L+ G++    M+        +   
Sbjct: 424 RAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHY 483

Query: 347 A-LIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG---FGEEALKCFAQME 400
           A ++D+  + G L +A  +   M  + +V+ +  ++    ++G    G++ +K   ++E
Sbjct: 484 ACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELE 542



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 146/318 (45%), Gaps = 19/318 (5%)

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
           G +  A+QLF+ +P+ + F ++ +I  Y     P+EAL L R M+ +G+ P+  ++   +
Sbjct: 58  GGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLL 117

Query: 315 SACAQVGALDLGKWIHVFMKRSRITM-----DMIVQTALIDMYMKCGSLDEARRIFYSMT 369
            ACA+V A     W HV +    +        + V  AL+  Y   GSL ++RR F  M 
Sbjct: 118 KACARVQA-----WEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMV 172

Query: 370 KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR 429
            +NV+S+N MI G    G   EA   F  M  +G+  D+   + +L ACS  G    G  
Sbjct: 173 DRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKL 232

Query: 430 IFQS-MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
           +    + R C I+  L   + LVD+  + G+L  A    + MP K N   W ++L A   
Sbjct: 233 VHSHLLVRGCRIDLILA--NALVDMYGKCGDLLMAHTCFDMMPFK-NAVSWTSMLCALAK 289

Query: 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE--TG 546
             ++  A    E + E        +  + + Y   G +  AL +   M+   +  +  T 
Sbjct: 290 RASIDAARDWFEQIPEKSIIS---WNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTL 346

Query: 547 RSVIEIDGNIKEFVSGEI 564
            +V+   G + +  SG++
Sbjct: 347 AAVLSACGQLGDLASGKM 364


>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 613

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 193/518 (37%), Positives = 291/518 (56%), Gaps = 35/518 (6%)

Query: 90  SSNPQKALSFYVNMKR--KGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV 147
           S+  + A++ Y  M R   G+    +T   VLKA      L EG ++H  V K GF  D 
Sbjct: 80  SAAARDAVALYAQMHRGCPGVRPLTFTVSSVLKAAARREMLREGEQVHVHVFKNGFQTDE 139

Query: 148 FVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK 207
            +   L+ +Y++CG +  AR VF+   +KD   +N ++  ++E GE+  A E+F+ MP++
Sbjct: 140 RIATTLVDLYARCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPER 199

Query: 208 DAISWSIMIDGYRK-------------------------------KKGDISSARILFEHM 236
           +  +   M+ GY                                 K G +  AR +F+ M
Sbjct: 200 NTHTLMEMVGGYSARGDMDSAKHVFEMANGVVNMVLCTAMISGFAKTGSVDDARSVFDGM 259

Query: 237 PIKDLISWNSMID-GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
             +D+ +WN MI   YAK G +  A+++F+ MPERNV  W+ MI GY Q G  K+A+ LF
Sbjct: 260 RQRDVATWNVMIGVMYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKLF 319

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
           R+M   GV+ D  ++   +S+C Q+GALDLG+++H +     +   + V+ +LIDMY KC
Sbjct: 320 RDMQISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGKGISVKNSLIDMYSKC 379

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKDDLIFLGV 414
           G + +A  IF  + K++  S+ VMI G  +NG   EAL  FAQME EG +  +++ FLGV
Sbjct: 380 GDIKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQMEEEGEVMPNEITFLGV 439

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L +CSH GL  +GY  F  M +  GI P++EHY C+VDLL RA  L +A   +E MP+ P
Sbjct: 440 LTSCSHGGLVEQGYHHFHRMSKVYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIEEMPIAP 499

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           ++A+W +LL ACR    V LAE V E + EL+   CG  VLLSN+YA    W    ++R 
Sbjct: 500 DVAIWRSLLFACRARGEVGLAEYVAERVEELEPSRCGGNVLLSNVYATTSRWVDVNKVRT 559

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            M + ++ K  G SVIE++G   EF+SG+   +++E +
Sbjct: 560 GMGRSRVSKRPGCSVIEVNGCAHEFLSGDETHLETEAI 597



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 157/325 (48%), Gaps = 65/325 (20%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A R+F+++   +  ++NTMI  Y ++   + A   +  M  +    + +T       
Sbjct: 155 LDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPER----NTHT------- 203

Query: 122 CGVLMGLVEGTEIHGEV--VKMGFLCDVFVVN-----GLIGMYSKCGHMGCARSVFEGSE 174
              LM +V G    G++   K  F     VVN      +I  ++K G +  ARSVF+G  
Sbjct: 204 ---LMEMVGGYSARGDMDSAKHVFEMANGVVNMVLCTAMISGFAKTGSVDDARSVFDGMR 260

Query: 175 IKDLVSWNLVLR-GFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILF 233
            +D+ +WN+++   + +CG +  AR+VFD MP+++ + W+ MI GY  + G    A  LF
Sbjct: 261 QRDVATWNVMIGVMYAKCGLVEDARKVFDAMPERNVVCWTSMISGY-TQVGKFKQAVKLF 319

Query: 234 EHMPI---------------------------------------KDLISWNSMIDGYAKI 254
             M I                                       K +   NS+ID Y+K 
Sbjct: 320 RDMQISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGKGISVKNSLIDMYSKC 379

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGA 313
           GD+  A ++F  + +R+ FSW++MI G+A +G   EAL LF +M  +G V P+ I+ +G 
Sbjct: 380 GDIKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQMEEEGEVMPNEITFLGV 439

Query: 314 ISACAQVGALDLGKWIHVFMKRSRI 338
           +++C+  G ++ G   H F + S++
Sbjct: 440 LTSCSHGGLVEQG--YHHFHRMSKV 462


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  358 bits (918), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 208/591 (35%), Positives = 326/591 (55%), Gaps = 50/591 (8%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           ++  ++   DLI+    LS  +         N+  A  LFNQ+ + +    N M+ G+ Q
Sbjct: 112 KVFEKMPDRDLISWNVMLSGYV------KNGNLSAARALFNQMPEKDVVSWNAMLSGFAQ 165

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG------TEIHGEVVKMGF 143
           +   ++A   +  M     LV N      L +  V  G +E       +++  E+V    
Sbjct: 166 NGFVEEARKIFDQM-----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNC 220

Query: 144 LCDVFV----------------------VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           L   +V                       N +I  Y++ G +  AR +FE   I+D+ +W
Sbjct: 221 LMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAW 280

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
             ++ GFV+ G + +A  +F+EMP+K+ +SW+ MI GY + +  I  AR LF+ MP ++ 
Sbjct: 281 TAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQ-QIEKARELFDQMPSRNT 339

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
            SWN+M+ GYA+ G++  A+ LF+EMP+R+  SW+ MI GYAQ G  +EAL+LF +M   
Sbjct: 340 SSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRD 399

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
           G   +  ++  A+S+CA++ AL+LGK +H  + ++      I   AL+ MY KCGS++EA
Sbjct: 400 GGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEA 459

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
             +F  +T+K+++S+N MIAG   +GFG+EAL  F  M+   I  DD+  +GVL ACSH+
Sbjct: 460 FDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHT 518

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           GL  +G   F SM ++ GI    +HY+C++DLL RAG L++ALN+++SMP  P+ A WG 
Sbjct: 519 GLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGA 578

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           LL A R H +  L E   E + E++ D+ G+YVLLSN+YA +G W     +R  MR + +
Sbjct: 579 LLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGV 638

Query: 542 KKETGRSVIEIDGNIKEFVSGEIFDVQSE---------ELELVIQSFVKTT 583
           KK  G S +EI      F  G+    ++E         +LEL    FV +T
Sbjct: 639 KKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSST 689



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 193/362 (53%), Gaps = 22/362 (6%)

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           D+V WN  +  ++  G+   A  VF+ M ++  ++++ MI GY         AR +FE M
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNN-KFDCARKVFEKM 117

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
           P +DLISWN M+ GY K G+L AA+ LFN+MPE++V SW+ M+ G+AQ+G  +EA  +F 
Sbjct: 118 PDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFD 177

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
           +ML +    + IS  G +SA  Q G ++  +   +F   S++  +++    L+  Y++  
Sbjct: 178 QMLVK----NEISWNGLLSAYVQNGRIEDAR--RLF--DSKMDWEIVSWNCLMGGYVRKK 229

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
            LD+AR +F  M  ++ IS+N+MI G   NG   EA + F ++      +D   +  ++ 
Sbjct: 230 RLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPI----RDVFAWTAMVS 285

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
               +G+  E  RIF+ M      E     ++ ++    ++ ++E+A  + + MP + N 
Sbjct: 286 GFVQNGMLDEATRIFEEMP-----EKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR-NT 339

Query: 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
           + W T++       N+  A+++ +   E+   DC  +  + + YA +G  E AL +   M
Sbjct: 340 SSWNTMVTGYAQCGNIDQAKILFD---EMPQRDCISWAAMISGYAQSGQSEEALHLFIKM 396

Query: 537 RK 538
           ++
Sbjct: 397 KR 398



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 129/481 (26%), Positives = 220/481 (45%), Gaps = 75/481 (15%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N  I  Y +    + ALS +  M+R+  +  N                     I G +  
Sbjct: 64  NRKISAYMRKGQCESALSVFNGMRRRSTVTYN-------------------AMISGYLSN 104

Query: 141 MGFLC-----------DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
             F C           D+   N ++  Y K G++  AR++F     KD+VSWN +L GF 
Sbjct: 105 NKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFA 164

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGY------------------------------ 219
           + G + +AR++FD+M  K+ ISW+ ++  Y                              
Sbjct: 165 QNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGG 224

Query: 220 --RKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSI 277
             RKK+ D   AR LF+ MP++D ISWN MI GYA+ G L  A++LF E+P R+VF+W+ 
Sbjct: 225 YVRKKRLD--DARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTA 282

Query: 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337
           M+ G+ Q+G   EA  +F EM       + +S    I+   Q   ++  + +   M  SR
Sbjct: 283 MVSGFVQNGMLDEATRIFEEM----PEKNEVSWNAMIAGYVQSQQIEKARELFDQMP-SR 337

Query: 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFA 397
            T        ++  Y +CG++D+A+ +F  M +++ IS+  MI+G   +G  EEAL  F 
Sbjct: 338 NTSSW---NTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFI 394

Query: 398 QMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA 457
           +M+ +G   +       L +C+       G ++   + +  G +      + L+ +  + 
Sbjct: 395 KMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVK-AGFQTGYIAGNALLAMYGKC 453

Query: 458 GELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL-VELKADDCGLYVLL 516
           G +E+A ++ E +  K ++  W T++     H     A  + E + + +K DD  L  +L
Sbjct: 454 GSIEEAFDVFEDITEK-DIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVL 512

Query: 517 S 517
           S
Sbjct: 513 S 513


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 202/519 (38%), Positives = 302/519 (58%), Gaps = 10/519 (1%)

Query: 62   MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
            +D A +LF+++   +    N+MI G   +     AL F+V M    + VD  T    + A
Sbjct: 604  VDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAA 663

Query: 122  CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
            C  +  L  G  +HG+ VK  F  +V   N L+ MYSKCG++  A   FE    K +VSW
Sbjct: 664  CANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSW 723

Query: 182  NLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMID----GYRKKKGDISSARILF 233
              ++  +V  G    A  +F EM  K    D  S + ++     G    KG      I  
Sbjct: 724  TSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRK 783

Query: 234  EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
             +M +   +S N+++D YAK G +  A  +F+++P +++ SW+ MI GY+++  P EAL 
Sbjct: 784  NNMALCLPVS-NALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALK 842

Query: 294  LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
            LF EM  +  RPD I++   + AC  + AL++G+ IH  + R+  + ++ V  ALIDMY+
Sbjct: 843  LFAEMQ-KESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYV 901

Query: 354  KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
            KCGSL  AR +F  + +K++I++ VMI+G GM+G G EA+  F +M   GI  D++ F  
Sbjct: 902  KCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTS 961

Query: 414  VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
            +L ACSHSGL  EG+  F SM   C +EPKLEHY+C+VDLL+R G L +A N++E+MP+K
Sbjct: 962  ILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIK 1021

Query: 474  PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
            P+  +WG LL  CR H +V LAE V E + EL+ D+ G YVLL+NIYA+A  WE   ++R
Sbjct: 1022 PDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLR 1081

Query: 534  KMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            + + KR +KK  G S IE+ G    FVS +    Q++ +
Sbjct: 1082 ERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSI 1120



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 136/463 (29%), Positives = 238/463 (51%), Gaps = 13/463 (2%)

Query: 35  LTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPN-TYMHNTMIRGYTQSSNP 93
           +++N +  E    ++L+    S   L   +  R+F+ I   N  ++ N M+  Y +  + 
Sbjct: 477 ISSNGIPIEGVLGAKLVFMYVSCGALR--EGRRIFDHILSDNKVFLWNLMMSEYAKIGDY 534

Query: 94  QKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGL 153
           ++++  +  M++ G+  ++YT+  +LK    L  + E   IHG V K+GF     VVN L
Sbjct: 535 RESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSL 594

Query: 154 IGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM-PQKDAISW 212
           I  Y K G +  A  +F+    +D+VSWN ++ G V  G    A E F +M   +  +  
Sbjct: 595 IATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDL 654

Query: 213 SIMIDGYR--KKKGDISSARILF----EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNE 266
           + +++        G +S  R L     +    ++++  N+++D Y+K G+L  A Q F +
Sbjct: 655 ATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEK 714

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326
           M ++ V SW+ +I  Y + G   +A+ LF EM  +GV PDV S+   + ACA   +LD G
Sbjct: 715 MGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKG 774

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
           + +H +++++ + + + V  AL+DMY KCGS++EA  +F  +  K+++S+N MI G   N
Sbjct: 775 RDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKN 834

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
               EALK FA+M+ E  P D +    +L AC        G  I   + R+ G   +L  
Sbjct: 835 SLPNEALKLFAEMQKESRP-DGITMACLLPACGSLAALEIGRGIHGCILRN-GYSSELHV 892

Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
            + L+D+  + G L  A  + + +P K +L  W  ++  C  H
Sbjct: 893 ANALIDMYVKCGSLVHARLLFDMIPEK-DLITWTVMISGCGMH 934



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 214/413 (51%), Gaps = 16/413 (3%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           NT I  + +  + + A+   + M +K  L D   Y  +L+ C     L EG  +H  +  
Sbjct: 422 NTKICKFCEVGDLRNAVEL-LRMSQKSEL-DLNAYSSILQLCAEHKCLQEGKMVHSVISS 479

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG--SEIKDLVSWNLVLRGFVECGEMGKAR 198
            G   +  +   L+ MY  CG +   R +F+   S+ K  + WNL++  + + G+  ++ 
Sbjct: 480 NGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFL-WNLMMSEYAKIGDYRESI 538

Query: 199 EVFDEMPQ----KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW----NSMIDG 250
            +F +M +     ++ ++S ++  +    G +   + +   +      S+    NS+I  
Sbjct: 539 YLFKKMQKLGITGNSYTFSCILKCF-ATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIAT 597

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           Y K G++ +A +LF+E+ +R+V SW+ MI G   +G    AL  F +ML   V  D+ ++
Sbjct: 598 YFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATL 657

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
           + +++ACA VG+L LG+ +H    ++  + +++    L+DMY KCG+L++A + F  M +
Sbjct: 658 VNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQ 717

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           K V+S+  +IA     G  ++A++ F +ME++G+  D      VL AC+      +G  +
Sbjct: 718 KTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDV 777

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
              ++++  +   L   + L+D+ ++ G +E+A  +   +P+K ++  W T++
Sbjct: 778 HNYIRKN-NMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVK-DIVSWNTMI 828



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 159/320 (49%), Gaps = 11/320 (3%)

Query: 61   NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            N++ A + F ++ Q       ++I  Y +      A+  +  M+ KG+  D Y+   VL 
Sbjct: 704  NLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLH 763

Query: 121  ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            AC     L +G ++H  + K      + V N L+ MY+KCG M  A  VF    +KD+VS
Sbjct: 764  ACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVS 823

Query: 181  WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI-------LF 233
            WN ++ G+ +     +A ++F EM QK++    I +       G +++  I       + 
Sbjct: 824  WNTMIGGYSKNSLPNEALKLFAEM-QKESRPDGITMACLLPACGSLAALEIGRGIHGCIL 882

Query: 234  EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
             +    +L   N++ID Y K G LV A+ LF+ +PE+++ +W++MI G   HG   EA+ 
Sbjct: 883  RNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIA 942

Query: 294  LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ--TALIDM 351
             F++M   G++PD I+    + AC+  G L+ G W       S   M+  ++    ++D+
Sbjct: 943  TFQKMRIAGIKPDEITFTSILYACSHSGLLNEG-WGFFNSMISECNMEPKLEHYACMVDL 1001

Query: 352  YMKCGSLDEARRIFYSMTKK 371
              + G+L +A  +  +M  K
Sbjct: 1002 LARTGNLSKAYNLIETMPIK 1021



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 99/210 (47%), Gaps = 13/210 (6%)

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
           + + G+ + A+ L R  + Q    D+ +    +  CA+   L  GK +H  +  + I ++
Sbjct: 428 FCEVGDLRNAVELLR--MSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIE 485

Query: 342 MIVQTALIDMYMKCGSLDEARRIF-YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME 400
            ++   L+ MY+ CG+L E RRIF + ++   V  +N+M++     G   E++  F +M+
Sbjct: 486 GVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQ 545

Query: 401 TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL----SR 456
             GI  +   F  +L   +  G   E  RI       C  +     Y+ +V+ L     +
Sbjct: 546 KLGITGNSYTFSCILKCFATLGRVGECKRI-----HGCVYKLGFGSYNTVVNSLIATYFK 600

Query: 457 AGELEQALNIVESMPMKPNLALWGTLLLAC 486
           +GE++ A  + + +  + ++  W +++  C
Sbjct: 601 SGEVDSAHKLFDELGDR-DVVSWNSMISGC 629


>gi|242082329|ref|XP_002445933.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
 gi|241942283|gb|EES15428.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
          Length = 498

 Score =  357 bits (917), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 175/474 (36%), Positives = 275/474 (58%), Gaps = 37/474 (7%)

Query: 44  PFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM 103
           P  L  ++  L S   L    +   F       T++HN +I     S +P+ + + + ++
Sbjct: 24  PDHLRLIIPHLPSHPNLAAALSSLYFPLFPSSATFLHNLLIHASAASPSPRLSFAAFSSL 83

Query: 104 KRKGLLVDNYTYPFVLKACGVLMGLVE-GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
            R G L D++T+P ++K+   L      G +++ +  + GFL D FVVN L+ MY+    
Sbjct: 84  LRSGYLPDHFTFPPLVKSASRLSSFPRTGAQVYAQAARRGFLADTFVVNSLLAMYAAFRD 143

Query: 163 MGCARSVFEG-SEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK 221
               R+VFE  +E+ D+VSWN V+ G+ +CGE+G AR VFDEMP ++ +SWS+M+  Y  
Sbjct: 144 TASMRAVFESCAEVADVVSWNTVVFGYAKCGEIGNARRVFDEMPHRNGVSWSVMVGAYAA 203

Query: 222 --------------------------------KKGDISSARILFEHMPIKDLISWNSMID 249
                                           + G +  AR +F+ MPI++++SWN+M+ 
Sbjct: 204 AGELDVAREMFDRMPAIGRNIITWNLMVTGFGRHGLLPLARKMFDEMPIRNIVSWNAMLR 263

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVI 308
           GYA  G++  A++LF+ MPE++V SW+ MI GYAQ G   + L LFR M   G +RP+ +
Sbjct: 264 GYAMNGEMDVARELFDVMPEKDVVSWTCMISGYAQAGRYAQTLELFRTMQSHGDIRPNEV 323

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMD--MIVQTALIDMYMKCGSLDEARRIFY 366
           +++  +SACA + AL+ G+W HVF+ + ++ +D    +  ALIDMY KCG  D A +IF+
Sbjct: 324 TMVSVLSACAHLTALEEGRWAHVFIDKHKMVLDNEFNLGAALIDMYAKCGRTDLATKIFH 383

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
           S+ +KNV ++N +I GL +N      +  F QM+      DD+ F+ VL AC+H+GL  E
Sbjct: 384 SLDQKNVSAWNALITGLAVNSDARRCIDVFEQMKMSEEKPDDITFVSVLTACAHAGLVDE 443

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
           G + FQSM   CG++P+L+HY C+VDLL RAG L++A  ++  MPM P++ L G
Sbjct: 444 GRQYFQSMSSACGVQPELKHYGCMVDLLGRAGLLDEAEELIRGMPMAPDVKLLG 497


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 189/556 (33%), Positives = 310/556 (55%), Gaps = 41/556 (7%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +MD   ++F  + + N     ++I GY +   P++A+S +  M   G+   + T   V+ 
Sbjct: 181 HMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVIS 240

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L  G  +   + ++G   +  +VN L+ MY KCG +  A+ +F+    ++LV 
Sbjct: 241 ACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVL 300

Query: 181 WNLVLRGFVECGEMGKAREVFDEM----PQKDAIS------------------------- 211
           +N +L  +   G   +A  + DEM    P+ D ++                         
Sbjct: 301 YNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVI 360

Query: 212 ------W----SIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQ 261
                 W    +++ID Y K      + R+ F+ M  K ++SWNS+  G+ + GD+ +A 
Sbjct: 361 RNGLEGWDSIGNVIIDMYMKCGKPEMACRV-FDLMSNKTVVSWNSLTAGFIRNGDVESAW 419

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
           ++FN++PERN   W+ MI G  Q    ++A+ LFREM  +G++ D +++MG  SAC  +G
Sbjct: 420 EVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLG 479

Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
           A +L KW+H +++++ I  DM + TAL+DM+ +CG    A ++F  MT+++V ++   I 
Sbjct: 480 APELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIG 539

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
            + M G GE A   F QM  +G+  D ++F+ VL ACSH G   +G  IF  M+ H GI 
Sbjct: 540 TMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDH-GIS 598

Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEG 501
           P++EHY C+VDLL RAG L +A ++++SMPM+PN  +WG+LL ACR H+NV +A    E 
Sbjct: 599 PQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAER 658

Query: 502 LVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
           + EL     G++VLLSNIYA AG W    R+R  +R++ ++K  G S ++++G I EF S
Sbjct: 659 INELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTS 718

Query: 562 GEIFDVQSEELELVIQ 577
           G+    +   + L++Q
Sbjct: 719 GDESHPEMTHIALMLQ 734



 Score =  231 bits (589), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 167/576 (28%), Positives = 289/576 (50%), Gaps = 57/576 (9%)

Query: 19  LQISKTTTHILQILAQLTTNDLITEPFTLSQLLMS---LTSPNTLN-MDQAERLFNQIYQ 74
           L+  KT   + Q+  Q+T N L   P TL++L+ +   + SP +L+   +A  LF +  +
Sbjct: 32  LRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVR 91

Query: 75  PNT--YMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
            +   +M N++IRGY+ +   ++A+  YV M   G+  ++YT+PFVL  C  +    EG 
Sbjct: 92  SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGI 151

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           ++HG VVKMG   DVF+ N LI  Y++CGHM     VFEG   +++VSW  ++ G+    
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGD 211

Query: 193 EMGKAREVFDEMPQ----KDAISWSIMIDGYRKKKGDISSARIL--FEHMPIK-DLISWN 245
              +A  +F EM +      +++   +I    K +      R+      + +K + +  N
Sbjct: 212 RPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVN 271

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           +++D Y K G + AA++LF+E  +RN+  ++ ++  YA+ G  +EAL +  EML QG RP
Sbjct: 272 ALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRP 331

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D ++++ AISA AQ+  L  GK  H ++ R+ +     +   +IDMYMKCG  + A R+F
Sbjct: 332 DRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVF 391

Query: 366 YSMTKKNVISYNVMIAGLGMNG-------------------------------FGEEALK 394
             M+ K V+S+N + AG   NG                                 E+A++
Sbjct: 392 DLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIE 451

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
            F +M+ EGI  D +  +G+  AC + G A E  +   +     GI   +   + LVD+ 
Sbjct: 452 LFREMQGEGIKADRVTMMGIASACGYLG-APELAKWVHTYIEKNGIPCDMRLNTALVDMF 510

Query: 455 SRAGELEQALNIVESMPMKPNLALW----GTLLLACRNHQNVT--LAEVVVEGLVELKAD 508
           +R G+ + A+ +   M  + +++ W    GT+ +   N +  T    +++++G+      
Sbjct: 511 ARCGDPQSAMQVFNKMTER-DVSAWTAAIGTMAME-GNGEGATGLFNQMLIQGV----KP 564

Query: 509 DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           D  L+V +    +  G  E  L I  +M    I  +
Sbjct: 565 DVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISPQ 600


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 199/558 (35%), Positives = 313/558 (56%), Gaps = 11/558 (1%)

Query: 33  AQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP--NTYMHNTMIRGYTQS 90
           A + + +L   P     LL +  +  TL +  A  LF    +P  +T  +N ++R    +
Sbjct: 38  ALIKSGELTGSPKCFHSLLEAAAASPTL-LPYAVSLFRLGPRPPLSTPCYNVLMRALLHA 96

Query: 91  SNPQKALSFYVNM-KRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
            +P+ AL  +V M     +  D +T    LK+C  +  L  G  I    VK G + D FV
Sbjct: 97  GHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFV 156

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA 209
           ++ LI MY+ C  +  A+ +F+  E   +V WN ++  +++ G   +  E+F  M +   
Sbjct: 157 LSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGV 216

Query: 210 ISWSIMIDGYRKKKGDISSARI---LFEHMPIKDLIS----WNSMIDGYAKIGDLVAAQQ 262
               I +       G I  A++   + E++  K L+       ++ID YAK G+L  A++
Sbjct: 217 AFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARR 276

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           LF+ M  R+V +WS MI GY Q    +EAL LF EM    V P+ ++++  +SACA +GA
Sbjct: 277 LFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGA 336

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
           L+ GKW+H +++R R+++ +I+ TAL+D Y KCG +D+A   F SM  KN  ++  +I G
Sbjct: 337 LETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKG 396

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
           +  NG G EAL+ F+ M    I   D+ F+GVL+ACSHS L  EG R F SM +  GI+P
Sbjct: 397 MATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKP 456

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
           + EHY C+VDLL RAG +++A   + +MP++PN  +W  LL +C  H+NV + E  ++ +
Sbjct: 457 RAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQI 516

Query: 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
           V L     G Y+LLSNIYA  G W++A  IRK M+ R I+K  G S+IE+DG + EF + 
Sbjct: 517 VSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAE 576

Query: 563 EIFDVQSEELELVIQSFV 580
           +    Q +E+   ++  +
Sbjct: 577 DSDHPQLKEIYQKVEEMI 594


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 194/561 (34%), Positives = 301/561 (53%), Gaps = 57/561 (10%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK----------GLLV 110
           N++ A   F  +    T  +N ++ GY ++  P  AL  +  M  +          GL +
Sbjct: 32  NIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSL 91

Query: 111 DNYTYPFVLKACGVLM---GLVEGTEIHGEVVKMGFLCDVFVV------------NGLIG 155
              T P    A   +     +V  T +    V+ G L D   +              L+G
Sbjct: 92  RRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLG 151

Query: 156 MYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIM 215
                G +  AR +F+    +D+V+W  +L G+ + G + +AR +FDEMP+++ +SW+ M
Sbjct: 152 GLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAM 211

Query: 216 IDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE------ 269
           I GY  + G+++ AR LFE MP ++ +SW +M+ GY + G +  A +LFN MPE      
Sbjct: 212 ISGY-AQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAAC 270

Query: 270 ----------------RNVF---------SWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
                           + VF         +WS MI  Y Q+    EAL  FREML +GVR
Sbjct: 271 NAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVR 330

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           P+  SV+  ++ CA +  LD G+ +H  M R    MD+   +ALI MY+KCG+LD+A+R+
Sbjct: 331 PNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRV 390

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F++   K+++ +N MI G   +G GE+AL  F  M   G+  D + ++G L ACS++G  
Sbjct: 391 FHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKV 450

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            EG  IF SM  +  I P  EHYSC+VDLL R+G +E+A +++++MP++P+  +WG L+ 
Sbjct: 451 KEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMG 510

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           ACR H+N  +AE   + L+EL+  + G YVLLS+IY   G WE A ++RK +  R + K 
Sbjct: 511 ACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKS 570

Query: 545 TGRSVIEIDGNIKEFVSGEIF 565
            G S IE D  +  F SG++ 
Sbjct: 571 PGCSWIEYDKRVHLFTSGDVL 591



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 173/403 (42%), Gaps = 75/403 (18%)

Query: 151 NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAI 210
           N  I   ++ G++  AR+ FE   ++   S+N +L G+        A  +F  MP +D  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 211 SWSIMIDGYRKKK--------------------------------GDISSARILFEHMPI 238
           S++ +I G   ++                                G ++ A  LF+ MP 
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
           ++ +S+  ++ G    G +  A++LF+EMP+R+V +W+ M+ GY Q G   EA  LF EM
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 299 LCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
                + +V+S    IS  AQ G ++L  K   V  +R+ ++      TA++  Y++ G 
Sbjct: 201 ----PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSW-----TAMLVGYIQAGH 251

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNG------------------------------ 387
           +++A  +F +M +  V + N M+ G G  G                              
Sbjct: 252 VEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQN 311

Query: 388 -FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
            F  EAL  F +M   G+  +    + +L  C+   +   G  +  +M R C  +  +  
Sbjct: 312 EFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLR-CSFDMDVFA 370

Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
            S L+ +  + G L++A  +  +   K ++ +W +++     H
Sbjct: 371 VSALITMYIKCGNLDKAKRVFHTFEPK-DIVMWNSMITGYAQH 412



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 124/289 (42%), Gaps = 47/289 (16%)

Query: 222 KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           + G+I  AR  FE MP++   S+N+++ GY +     AA  LF  MP R++ S++ +I G
Sbjct: 29  RAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISG 88

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
                     L L R+ L     PD  + + +I     V                     
Sbjct: 89  ----------LSLRRQTL-----PDAAAALASIPFPPSV--------------------- 112

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
            +  T+L+  Y++ G L +A R+F  M ++N +SY V++ GL   G   EA + F +M  
Sbjct: 113 -VSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPD 171

Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
               +D + +  +L     +G  TE   +F  M +       +  ++ ++   ++ GE+ 
Sbjct: 172 ----RDVVAWTAMLSGYCQAGRITEARALFDEMPKR-----NVVSWTAMISGYAQNGEVN 222

Query: 462 QALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
            A  + E MP + N   W  +L+      +V  A  +   + E     C
Sbjct: 223 LARKLFEVMPER-NEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAAC 270


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 200/575 (34%), Positives = 321/575 (55%), Gaps = 69/575 (12%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERL-F 69
           L++ LVS+L        + Q+ A +    L    F L++LL +LT  + + MD   RL F
Sbjct: 38  LESRLVSVLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLD-VPMDPYPRLVF 96

Query: 70  NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV 129
            Q+  PN ++   +IRGY       +++  Y +M+R+G+   ++T+  +LKAC   + + 
Sbjct: 97  QQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVN 156

Query: 130 EGTEIHGEVVKMG-FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
            G ++H + + +G F  D++V N LI MY                               
Sbjct: 157 LGRQVHTQTILIGGFGSDLYVGNTLIDMY------------------------------- 185

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMI 248
           V+CG +G    VFDEM           +D                     +D+ISW S+I
Sbjct: 186 VKCGCLGCGHRVFDEM-----------LD---------------------RDVISWTSLI 213

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
             YAK+G++ AA +LF+ +P +++ +W+ M+ GYAQ+  P+EAL +F  M   GV+ D +
Sbjct: 214 VAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEV 273

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRI--TMDMIVQTALIDMYMKCGSLDEARRIFY 366
           +++G ISACAQ+GA     W+    ++S    T +++V +ALIDMY KCGS+++A ++F 
Sbjct: 274 TLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFE 333

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            M ++NV SY+ MI G  M+G    A++ F +M    I  + + F+GVL ACSH+G+  +
Sbjct: 334 RMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQ 393

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G ++F  M+   G+ P  +HY+C+VDLL RAG LE+ALN+V+ MPM P+  +WG LL AC
Sbjct: 394 GQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGAC 453

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           R H N  +A++    L EL+ +  G Y+LLSNIYA AG W+   ++RK+MR + +KK  G
Sbjct: 454 RIHGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPG 513

Query: 547 RSVIE-IDGNIKEFVSGEIFDVQSEELELVIQSFV 580
            S +E   G I EF +G++   +S E++  ++  +
Sbjct: 514 CSWVEGKKGIIHEFFAGDMSHPKSREIKQALEDLL 548


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 192/551 (34%), Positives = 308/551 (55%), Gaps = 41/551 (7%)

Query: 48  SQLLMSLTS-PNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK 106
           SQ+L S  + P    +  A +LF++I  P+ +++N++IR Y  S  PQ+AL     M R+
Sbjct: 45  SQILASYCALPAGGGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRR 104

Query: 107 GLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCA 166
           G+L + +T PF+LKAC  +         HG VVK+GF+  VFV N L+  Y+  G +G +
Sbjct: 105 GILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDS 164

Query: 167 RSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK------------------- 207
           R  F+    +++VSWN ++ G+ + G   +A  +F+ M ++                   
Sbjct: 165 RRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAE 224

Query: 208 --------------------DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM 247
                               D I  + ++D Y  K GD+  A   F+ MP K+ +SW SM
Sbjct: 225 GNLEFGKLVHSHLLVRGCRIDLILANALVDMY-GKCGDLLMAHTCFDMMPFKNAVSWTSM 283

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           +   AK   + AA+  F ++PE+++ SW+ MI  Y Q G   EAL L+  M   G+ PD 
Sbjct: 284 LCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDE 343

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
            ++   +SAC Q+G L  GK IH  ++ +     + +  +L+DMY +CG +D A  +F  
Sbjct: 344 FTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSE 403

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           M  KNVIS+N +I  L M+G  ++AL  F  M  +  P D++ F+ +L AC+H GL   G
Sbjct: 404 MPSKNVISWNAIIGALAMHGRAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAG 463

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
              FQ+M+    ++P +EHY+C+VDLL R G+L +A+++++ MPM+P++ +WG LL ACR
Sbjct: 464 QYYFQAMRHVYNVKPGVEHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACR 523

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
            H ++ + + V++ L+EL+    GL+VL+SN+  +   WE   R+RK+MR+  +KK  G 
Sbjct: 524 IHGHIQIGKQVIKQLLELEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGV 583

Query: 548 SVIEIDGNIKE 558
           S IE + NI E
Sbjct: 584 SSIETNSNIHE 594



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/419 (26%), Positives = 199/419 (47%), Gaps = 49/419 (11%)

Query: 27  HILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRG 86
           H++     +     + + F  + LL S  S  +L    + R F+++   N    N+MI G
Sbjct: 128 HVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLG--DSRRFFDEMVDRNVVSWNSMING 185

Query: 87  YTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCD 146
           Y Q+ N ++A S +  M+R+GLL D +T   +L AC     L  G  +H  ++  G   D
Sbjct: 186 YAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRID 245

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
           + + N L+ MY KCG +  A + F+    K+ VSW  +L    +   +  AR+ F+++P+
Sbjct: 246 LILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPE 305

Query: 207 KDAISWSIMI-------------DGYRKKK---------------------GDISSARIL 232
           K  ISW+ MI             D Y + K                     GD++S +++
Sbjct: 306 KSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMI 365

Query: 233 FEHMPIKD------LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
             H  I+D      +  +NS++D YA+ G +  A  LF+EMP +NV SW+ +I   A HG
Sbjct: 366 --HDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHG 423

Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
             ++AL  FR M+     PD I+ +  +SAC   G L+ G++    M+        +   
Sbjct: 424 RAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHY 483

Query: 347 A-LIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG---FGEEALKCFAQME 400
           A ++D+  + G L +A  +   M  + +V+ +  ++    ++G    G++ +K   ++E
Sbjct: 484 ACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELE 542



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 146/318 (45%), Gaps = 19/318 (5%)

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
           G +  A+QLF+ +P+ + F ++ +I  Y     P+EAL L R M+ +G+ P+  ++   +
Sbjct: 58  GGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLL 117

Query: 315 SACAQVGALDLGKWIHVFMKRSRITM-----DMIVQTALIDMYMKCGSLDEARRIFYSMT 369
            ACA+V A     W HV +    +        + V  AL+  Y   GSL ++RR F  M 
Sbjct: 118 KACARVQA-----WEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMV 172

Query: 370 KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR 429
            +NV+S+N MI G    G   EA   F  M  +G+  D+   + +L ACS  G    G  
Sbjct: 173 DRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKL 232

Query: 430 IFQS-MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
           +    + R C I+  L   + LVD+  + G+L  A    + MP K N   W ++L A   
Sbjct: 233 VHSHLLVRGCRIDLILA--NALVDMYGKCGDLLMAHTCFDMMPFK-NAVSWTSMLCALAK 289

Query: 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE--TG 546
             ++  A    E + E        +  + + Y   G +  AL +   M+   +  +  T 
Sbjct: 290 RASIDAARDWFEQIPEKSIIS---WNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTL 346

Query: 547 RSVIEIDGNIKEFVSGEI 564
            +V+   G + +  SG++
Sbjct: 347 AAVLSACGQLGDLASGKM 364


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 207/591 (35%), Positives = 325/591 (54%), Gaps = 50/591 (8%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           ++  ++   DLI+    LS  +         N+  A  LFNQ+ + +    N M+ G+ Q
Sbjct: 112 KVFEKMPDRDLISWNVMLSGYV------KNGNLSAARALFNQMPEKDVVSWNAMLSGFAQ 165

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG------TEIHGEVVKMGF 143
           +   ++A   +  M     LV N      L +  V  G +E       +++  E+V    
Sbjct: 166 NGFVEEARKIFDQM-----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNC 220

Query: 144 LCDVFV----------------------VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           L   +V                       N +I  Y++ G +  AR +FE   I+D+ +W
Sbjct: 221 LMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAW 280

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
             ++ GFV+ G + +A  +F+EMP+K+ +SW+ MI GY + +  I  AR LF+ MP ++ 
Sbjct: 281 TAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQ-QIEKARELFDQMPSRNT 339

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
            SWN+M+ GYA+ G++  A+ LF+EMP+R+  SW+ MI GYAQ G  +EAL+LF +M   
Sbjct: 340 SSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRD 399

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
           G   +  ++  A+S+CA++ AL+LGK +H  + ++      I   AL+ MY KCGS++EA
Sbjct: 400 GGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEA 459

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
             +F  +T+K+++S+N MIAG   +GFG+EAL  F  M+   I  DD+  +GVL ACSH+
Sbjct: 460 FDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHT 518

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           G   +G   F SM ++ GI    +HY+C++DLL RAG L++ALN+++SMP  P+ A WG 
Sbjct: 519 GFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGA 578

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           LL A R H +  L E   E + E++ D+ G+YVLLSN+YA +G W     +R  MR + +
Sbjct: 579 LLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGV 638

Query: 542 KKETGRSVIEIDGNIKEFVSGEIFDVQSE---------ELELVIQSFVKTT 583
           KK  G S +EI      F  G+    ++E         +LEL    FV +T
Sbjct: 639 KKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSST 689



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 193/362 (53%), Gaps = 22/362 (6%)

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           D+V WN  +  ++  G+   A  VF+ M ++  ++++ MI GY         AR +FE M
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNN-KFDCARKVFEKM 117

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
           P +DLISWN M+ GY K G+L AA+ LFN+MPE++V SW+ M+ G+AQ+G  +EA  +F 
Sbjct: 118 PDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFD 177

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
           +ML +    + IS  G +SA  Q G ++  +   +F   S++  +++    L+  Y++  
Sbjct: 178 QMLVK----NEISWNGLLSAYVQNGRIEDAR--RLF--DSKMDWEIVSWNCLMGGYVRKK 229

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
            LD+AR +F  M  ++ IS+N+MI G   NG   EA + F ++      +D   +  ++ 
Sbjct: 230 RLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPI----RDVFAWTAMVS 285

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
               +G+  E  RIF+ M      E     ++ ++    ++ ++E+A  + + MP + N 
Sbjct: 286 GFVQNGMLDEATRIFEEMP-----EKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR-NT 339

Query: 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
           + W T++       N+  A+++ +   E+   DC  +  + + YA +G  E AL +   M
Sbjct: 340 SSWNTMVTGYAQCGNIDQAKILFD---EMPQRDCISWAAMISGYAQSGQSEEALHLFIKM 396

Query: 537 RK 538
           ++
Sbjct: 397 KR 398



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 132/493 (26%), Positives = 224/493 (45%), Gaps = 79/493 (16%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N  I  Y +    + ALS +  M+R+  +  N                     I G +  
Sbjct: 64  NRKISAYMRKGQCESALSVFNGMRRRSTVTYN-------------------AMISGYLSN 104

Query: 141 MGFLC-----------DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
             F C           D+   N ++  Y K G++  AR++F     KD+VSWN +L GF 
Sbjct: 105 NKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFA 164

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGY------------------------------ 219
           + G + +AR++FD+M  K+ ISW+ ++  Y                              
Sbjct: 165 QNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGG 224

Query: 220 --RKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSI 277
             RKK+ D   AR LF+ MP++D ISWN MI GYA+ G L  A++LF E+P R+VF+W+ 
Sbjct: 225 YVRKKRLD--DARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTA 282

Query: 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337
           M+ G+ Q+G   EA  +F EM       + +S    I+   Q   ++  + +   M  SR
Sbjct: 283 MVSGFVQNGMLDEATRIFEEM----PEKNEVSWNAMIAGYVQSQQIEKARELFDQMP-SR 337

Query: 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFA 397
            T        ++  Y +CG++D+A+ +F  M +++ IS+  MI+G   +G  EEAL  F 
Sbjct: 338 NTSSW---NTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFI 394

Query: 398 QMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA 457
           +M+ +G   +       L +C+       G ++   + +  G +      + L+ +  + 
Sbjct: 395 KMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVK-AGFQTGYIAGNALLAMYGKC 453

Query: 458 GELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL-VELKADDCGLYVLL 516
           G +E+A ++ E +  K ++  W T++     H     A  + E + + +K DD  L  +L
Sbjct: 454 GSIEEAFDVFEDITEK-DIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVL 512

Query: 517 SNI----YADAGM 525
           S      + D GM
Sbjct: 513 SACSHTGFVDKGM 525


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 194/561 (34%), Positives = 301/561 (53%), Gaps = 57/561 (10%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK----------GLLV 110
           N++ A   F  +    T  +N ++ GY ++  P  AL  +  M  +          GL +
Sbjct: 32  NIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSL 91

Query: 111 DNYTYPFVLKACGVLM---GLVEGTEIHGEVVKMGFLCDVFVV------------NGLIG 155
              T P    A   +     +V  T +    V+ G L D   +              L+G
Sbjct: 92  RRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLG 151

Query: 156 MYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIM 215
                G +  AR +F+    +D+V+W  +L G+ + G + +AR +FDEMP+++ +SW+ M
Sbjct: 152 GLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAM 211

Query: 216 IDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE------ 269
           I GY  + G+++ AR LFE MP ++ +SW +M+ GY + G +  A +LFN MPE      
Sbjct: 212 ISGY-AQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAAC 270

Query: 270 ----------------RNVF---------SWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
                           + VF         +WS MI  Y Q+    EAL  FREML +GVR
Sbjct: 271 NAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVR 330

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           P+  SV+  ++ CA +  LD G+ +H  M R    MD+   +ALI MY+KCG+LD+A+R+
Sbjct: 331 PNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRV 390

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F++   K+++ +N MI G   +G GE+AL  F  M   G+  D + ++G L ACS++G  
Sbjct: 391 FHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKV 450

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            EG  IF SM  +  I P  EHYSC+VDLL R+G +E+A +++++MP++P+  +WG L+ 
Sbjct: 451 KEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMG 510

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           ACR H+N  +AE   + L+EL+  + G YVLLS+IY   G WE A ++RK +  R + K 
Sbjct: 511 ACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKS 570

Query: 545 TGRSVIEIDGNIKEFVSGEIF 565
            G S IE D  +  F SG++ 
Sbjct: 571 PGCSWIEYDKRVHLFTSGDVL 591



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 173/403 (42%), Gaps = 75/403 (18%)

Query: 151 NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAI 210
           N  I   ++ G++  AR+ FE   ++   S+N +L G+        A  +F  MP +D  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 211 SWSIMIDGYRKKK--------------------------------GDISSARILFEHMPI 238
           S++ +I G   ++                                G ++ A  LF+ MP 
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
           ++ +S+  ++ G    G +  A++LF+EMP+R+V +W+ M+ GY Q G   EA  LF EM
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 299 LCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
                + +V+S    IS  AQ G ++L  K   V  +R+ ++      TA++  Y++ G 
Sbjct: 201 ----PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSW-----TAMLVGYIQAGH 251

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNG------------------------------ 387
           +++A  +F +M +  V + N M+ G G  G                              
Sbjct: 252 VEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQN 311

Query: 388 -FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
            F  EAL  F +M   G+  +    + +L  C+   +   G  +  +M R C  +  +  
Sbjct: 312 EFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLR-CSFDMDVFA 370

Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
            S L+ +  + G L++A  +  +   K ++ +W +++     H
Sbjct: 371 VSALITMYIKCGNLDKAKRVFHTFEPK-DIVMWNSMITGYAQH 412



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 124/289 (42%), Gaps = 47/289 (16%)

Query: 222 KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           + G+I  AR  FE MP++   S+N+++ GY +     AA  LF  MP R++ S++ +I G
Sbjct: 29  RAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISG 88

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
                     L L R+ L     PD  + + +I     V                     
Sbjct: 89  ----------LSLRRQTL-----PDAAAALASIPFPPSV--------------------- 112

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
            +  T+L+  Y++ G L +A R+F  M ++N +SY V++ GL   G   EA + F +M  
Sbjct: 113 -VSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPD 171

Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
               +D + +  +L     +G  TE   +F  M +       +  ++ ++   ++ GE+ 
Sbjct: 172 ----RDVVAWTAMLSGYCQAGRITEARALFDEMPKR-----NVVSWTAMISGYAQNGEVN 222

Query: 462 QALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
            A  + E MP + N   W  +L+      +V  A  +   + E     C
Sbjct: 223 LARKLFEVMPER-NEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAAC 270


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 205/583 (35%), Positives = 327/583 (56%), Gaps = 52/583 (8%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
           +SLL+  K+   + QI +      L ++P   ++++    +  + NM+ A ++F+ I  P
Sbjct: 11  ISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHP 70

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           + ++ NTMI+GY++ S+P+  +S Y+ M    +  D +T+PF LK     M L  G E+ 
Sbjct: 71  SMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELL 130

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
              VK GF  ++FV    I M+S CG +  A  VF+                      MG
Sbjct: 131 NHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFD----------------------MG 168

Query: 196 KAREVFDEMPQKDAISWSIMIDGY-RKKKGDISSARILFEHMP-IKDLISWNSMIDGY-- 251
            A EV         ++W+IM+ GY R K+  IS   ++      +KDL  W   I  Y  
Sbjct: 169 DACEV---------VTWNIMLSGYNRVKQFKISKMLLVLSACSKLKDL-EWGKHIFKYIN 218

Query: 252 --------AKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
                   A  G++  AQ +F+ M  R+V SW+ MIDGY +  +   AL LFREM    V
Sbjct: 219 GGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNV 278

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
           +PD  +++  + ACA +GAL+LG+W+   + ++    D  V  AL+DMY KCG++ +A++
Sbjct: 279 KPDEFTMVSILIACALLGALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKK 338

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           +F  M +K+  ++  MI GL +NG GEEAL  F+ M    +  D++ ++GVL AC    +
Sbjct: 339 VFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYIGVLCAC----M 394

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             +G   F +M    GI+P + HY C+VDLL   G LE+AL ++ +MP+KPN  +WG+ L
Sbjct: 395 VDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSPL 454

Query: 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
            ACR H+NV LA++  + ++EL+ ++  +YVLL NIYA +  WE+  ++RK+M +R IKK
Sbjct: 455 GACRVHKNVQLADMAAKQILELEPENGAVYVLLCNIYAASKKWENLCQVRKLMMERGIKK 514

Query: 544 ETGRSVIEIDGNIKEFVSGEIFDVQSEE----LELVIQSFVKT 582
             G S++E++GN+ EFV+G+    QS+E    LE ++Q  +K 
Sbjct: 515 TPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQGLIKA 557


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 202/560 (36%), Positives = 316/560 (56%), Gaps = 36/560 (6%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           Q+  ++ T DL++    +S  +         N+  A  LF+Q+ + +    N M+ GY Q
Sbjct: 101 QLFEKMPTRDLVSWNVMISGCV------RYRNLRAARLLFDQMPERDVVSWNAMLSGYAQ 154

Query: 90  SSNPQKALSFYVNMKRK------GLL--------VDNYTYPFVLKACGVLMGLVEGTEIH 135
           +   ++A   +  M  K      G+L        +++    F  KA      L+    + 
Sbjct: 155 NGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKA---DWELISWNCMM 211

Query: 136 GEVVKMGFLCDVFVV------------NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
           G  VK   L D   +            N +I  Y++ G +  A+ +FE S ++D+ +W  
Sbjct: 212 GGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTA 271

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243
           ++ G+V+ G + +AR VFD MP+K+++SW+ +I GY + K  +  AR LFE MP +++ S
Sbjct: 272 MVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCK-RMDQARELFEAMPCQNVSS 330

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
           WN+MI GYA+ GD+  A+  F+ MP+R+  SW+ +I GYAQ G  +EAL+LF EM   G 
Sbjct: 331 WNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGE 390

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
           R +  +    +S CA++ AL+LGK +H  + ++ +     V  AL+ MY KCG++D+A  
Sbjct: 391 RLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYI 450

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           +F  + +K V+S+N MIAG   +GFG+EAL  F  M+  GI  DD+  +GVL ACSH+GL
Sbjct: 451 VFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGL 510

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             +G   F SM +  GI    +HY+C++DLL RAG L+ A N++++MP +P+ A WG LL
Sbjct: 511 VDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALL 570

Query: 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
            A R H N  L E   + + E++ D+ G+YVLLSN+YA +G W    R+R  MR R +KK
Sbjct: 571 GASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKK 630

Query: 544 ETGRSVIEIDGNIKEFVSGE 563
             G S +E+   I  F  G+
Sbjct: 631 VPGYSWVEVQNKIHTFTVGD 650



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 184/362 (50%), Gaps = 22/362 (6%)

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           D+V WN+ +   +  G+   A  +F+ MP++ +ISW+ MI G          AR LFE M
Sbjct: 48  DIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSND-KFYLARQLFEKM 106

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
           P +DL+SWN MI G  +  +L AA+ LF++MPER+V SW+ M+ GYAQ+G  KEA  +F 
Sbjct: 107 PTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFD 166

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
           EM C+    + IS  G ++A  Q G ++  +   +F   S+   ++I    ++  Y+K  
Sbjct: 167 EMPCK----NSISWNGMLAAYVQNGRIEDAR--RLF--ESKADWELISWNCMMGGYVKRN 218

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
            L +AR IF  M +++ +S+N MI+G   NG   EA + F     E   +D   +  ++ 
Sbjct: 219 RLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLF----EESPVRDVFTWTAMVS 274

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
               +G+  E  R+F  M     +      ++ ++    +   ++QA  + E+MP + N+
Sbjct: 275 GYVQNGMLDEARRVFDGMPEKNSVS-----WNAIIAGYVQCKRMDQARELFEAMPCQ-NV 328

Query: 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
           + W T++     + ++  A    +    +   D   +  +   YA +G  E AL +   M
Sbjct: 329 SSWNTMITGYAQNGDIAQARNFFD---RMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM 385

Query: 537 RK 538
           ++
Sbjct: 386 KR 387


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 188/491 (38%), Positives = 290/491 (59%), Gaps = 42/491 (8%)

Query: 111 DNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF 170
           D+ T+PF+LKAC  L     G  + G V K+GF  DVFVVN  +  +S  G M  AR +F
Sbjct: 120 DHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVLARRLF 179

Query: 171 EGSEIKDLVSWNLVLRGFVECGEMGKAREVF------------DEMPQKDAIS------- 211
           + S  +D+VSWN ++ G+V  G   +A E+F            DE+    A+S       
Sbjct: 180 DESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGD 239

Query: 212 ----------------------WSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMID 249
                                  + ++D Y  K G +  A+ +FE +  K ++SW +MI 
Sbjct: 240 LELGKRLHEFVDSKGVRCTVRLMNAVMDMY-VKCGSLELAKSVFERIDNKTVVSWTTMIV 298

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
           G+A++G +  A+ LF+EMPER+VF W+ ++ GY Q+   KEA+ LF EM    V P+ I+
Sbjct: 299 GHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEIT 358

Query: 310 VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369
           ++  +SAC+Q+GAL++G W+H ++ R ++ + + + T+L+DMY KCG++ +A  IF  + 
Sbjct: 359 MVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIP 418

Query: 370 KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR 429
            KN +++  MI GL  +G  +EA++ F +M   G+  D++ F+GVL AC H+GL  EG +
Sbjct: 419 DKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQ 478

Query: 430 IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
            F  M     +E K++HYSC++DLL RAG L++A  +V +MPM P+  +WG L  ACR H
Sbjct: 479 FFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGALFFACRMH 538

Query: 490 QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSV 549
            N+TL E     LVEL   D G+YVLL+N+YA+A M + A ++R MMR   ++K  G S 
Sbjct: 539 GNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSC 598

Query: 550 IEIDGNIKEFV 560
           IE++G + EF+
Sbjct: 599 IELNGVVHEFI 609



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 118/435 (27%), Positives = 211/435 (48%), Gaps = 51/435 (11%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV--DNYTYPFV 118
           +M  A RLF++    +    NT+I GY +S  P++AL  +  +   G  V  D  T    
Sbjct: 171 SMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGA 230

Query: 119 LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDL 178
           +  C  +  L  G  +H  V   G  C V ++N ++ MY KCG +  A+SVFE  + K +
Sbjct: 231 VSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTV 290

Query: 179 VSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY-RKKKG--------DISSA 229
           VSW  ++ G    G M  AR +FDEMP++D   W+ ++ GY + K+G        ++  +
Sbjct: 291 VSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQES 350

Query: 230 RILFEHMPIKDLIS------------W-----------------NSMIDGYAKIGDLVAA 260
           ++    + + +L+S            W                  S++D YAK G++  A
Sbjct: 351 KVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKA 410

Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
             +F E+P++N  +W+ MI G A HG+  EA+  F+ M+  G++PD I+ +G +SAC   
Sbjct: 411 ICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHA 470

Query: 321 GALDLGKWIHVFM-KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNV 378
           G +  G+     M ++  +   M   + +ID+  + G LDEA ++  +M    + + +  
Sbjct: 471 GLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGA 530

Query: 379 MIAGLGMNG---FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMK 435
           +     M+G    GE+A     +++    P D  I++ +    + + +  +  ++ + M 
Sbjct: 531 LFFACRMHGNITLGEKAAMKLVELD----PSDSGIYVLLANMYAEANMRKKADKV-RVMM 585

Query: 436 RHCGIEPKLEHYSCL 450
           RH G+E K+   SC+
Sbjct: 586 RHLGVE-KVPGCSCI 599



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 101/204 (49%), Gaps = 5/204 (2%)

Query: 284 QHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
           +H   +  L L+R +LC    RPD ++    + ACA++     G  +   +++   + D+
Sbjct: 97  RHLVDRHCLPLYRALLCSSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADV 156

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
            V  A +  +   GS+  ARR+F     ++V+S+N +I G   +G   EAL+ F ++  +
Sbjct: 157 FVVNAGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVED 216

Query: 403 G--IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460
           G  +  D++  +G +  C+  G    G R+ + +    G+   +   + ++D+  + G L
Sbjct: 217 GKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSK-GVRCTVRLMNAVMDMYVKCGSL 275

Query: 461 EQALNIVESMPMKPNLALWGTLLL 484
           E A ++ E +  K  +  W T+++
Sbjct: 276 ELAKSVFERIDNK-TVVSWTTMIV 298


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 198/576 (34%), Positives = 315/576 (54%), Gaps = 71/576 (12%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           L+S+L      + I Q+ A +  N L    + L++L+  LT  +         +F Q+  
Sbjct: 45  LMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNY 104

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           PN ++   MIRGY       ++ +FY  M+R G+   ++T+  + KACG  + +  G ++
Sbjct: 105 PNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQV 164

Query: 135 HGEVVKMG-FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           H + + +G F  D++V N +I +                               +V+CG 
Sbjct: 165 HAQTILIGGFASDLYVGNSMIDL-------------------------------YVKCGF 193

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAK 253
           +G AR+V                                F+ M  +D++SW  +I  YAK
Sbjct: 194 LGCARKV--------------------------------FDEMSERDVVSWTELIVAYAK 221

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313
            GD+ +A  LF+++P +++ +W+ M+ GYAQ+G PKEAL  F++M   G+  D +++ G 
Sbjct: 222 YGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGV 281

Query: 314 ISACAQVGALDLGKWIHVFMKRSRI--TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
           ISACAQ+GA+    WI    +RS    + +++V +ALIDMY KCGS DEA ++F  M ++
Sbjct: 282 ISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKER 341

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           NV SY+ MI G  M+G    AL+ F  M    I  + + F+G+L ACSH+GL  +G ++F
Sbjct: 342 NVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLF 401

Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN 491
             M++  G+ P  +HY+C+VDLL RAG LE+AL++V++MPM+PN  +WG LL ACR H N
Sbjct: 402 AKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGN 461

Query: 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
             +A++    L +L+ +  G Y+LLSNIYA AG WE   ++RK++R++  KK  G S  E
Sbjct: 462 PDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFE 521

Query: 552 -IDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586
             +G I +F +G+    +S E    I+  +K  IER
Sbjct: 522 GKNGEIHDFFAGDTTHPRSSE----IRQALKQLIER 553


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 195/558 (34%), Positives = 315/558 (56%), Gaps = 9/558 (1%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           +I  QL TN      F ++ ++          +D A ++F+++ + +    NT+I G++Q
Sbjct: 168 EIHGQLITNSFAANVFAMTGVVNMYA--KCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQ 225

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
           +   +KAL   + M+ +G   D+ T   VL A   +  L+ G  IHG  ++ GF   V +
Sbjct: 226 NGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNI 285

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK-- 207
              L  MYSKCG +  AR +F+G + K +VSWN ++ G+V+ GE  KA  VF++M ++  
Sbjct: 286 STALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGI 345

Query: 208 DAISWSIMIDGYR-KKKGDISSARILFEHMPI----KDLISWNSMIDGYAKIGDLVAAQQ 262
           D    +IM   +     GD+   + + + +       D+   NS+I  Y+K   +  A  
Sbjct: 346 DPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASD 405

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +FN +  R   SW+ MI GYAQ+G   EAL  F EM   G++PD  +++  I A A++  
Sbjct: 406 IFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSV 465

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
               KWIH  + RS +  ++ V TAL+DMY KCG++  AR++F  ++ ++VI++N MI G
Sbjct: 466 TRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDG 525

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
            G +G G  AL  F +M+   +  +D+ +L V+ ACSHSGL  EG R F+SMK+  G+EP
Sbjct: 526 YGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEP 585

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
            ++HY  +VDLL RAG +++A + +E+MP+ P + ++G +L AC+ H+N+ + E   + L
Sbjct: 586 SMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKL 645

Query: 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
            EL  D+ G +VLL+NIYA    W     +RK M K+ +KK  G SV+E+   +  F SG
Sbjct: 646 FELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSG 705

Query: 563 EIFDVQSEELELVIQSFV 580
                QS+ +   ++  V
Sbjct: 706 STTHPQSKRIYAFLEELV 723



 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 137/495 (27%), Positives = 241/495 (48%), Gaps = 72/495 (14%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           K+P   LL++  +   + QI+  +  N L  E    ++L+   +   ++N  +A R+F  
Sbjct: 49  KHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSIN--EAARVFEP 106

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           I      +++TM++GY ++S+ + AL+F   M+   +    Y + ++LK CG    L  G
Sbjct: 107 IDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRG 166

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            EIHG+++   F  +VF + G++ MY+KC  +  A  +F+    +DLVSWN ++ GF + 
Sbjct: 167 KEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQN 226

Query: 192 GEMGKAREVF----DEMPQKDAISWSIM---------------IDGYR------------ 220
           G   KA E+     DE  + D+I+   +               I GY             
Sbjct: 227 GFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNIS 286

Query: 221 -------KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
                   K G + +AR++F+ M  K ++SWNSM+DGY                      
Sbjct: 287 TALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGY---------------------- 324

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
                     Q+G P++A+ +F +ML +G+ P  +++M A+ ACA +G L+ GK++H F+
Sbjct: 325 ---------VQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFV 375

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
            +  +  D+ V  +LI MY KC  +D A  IF ++  +  +S+N MI G   NG   EAL
Sbjct: 376 DQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEAL 435

Query: 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
            CF++M++ G+  D    + V+ A +   +      I   + R C ++  +   + LVD+
Sbjct: 436 NCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSC-LDKNIFVTTALVDM 494

Query: 454 LSRAGELEQALNIVE 468
            S+ G +  A  + +
Sbjct: 495 YSKCGAIHMARKLFD 509



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 136/287 (47%), Gaps = 3/287 (1%)

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           ++K G +  A ++F  + ++    +  M+ GYA++ + + AL     M    V+P V + 
Sbjct: 91  FSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNF 150

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
              +  C     L  GK IH  +  +    ++   T +++MY KC  +D+A ++F  M +
Sbjct: 151 TYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPE 210

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           ++++S+N +IAG   NGF ++AL+   +M+ EG   D +  + VL A +  GL   G  I
Sbjct: 211 RDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSI 270

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
                R  G    +   + L D+ S+ G +E A  I + M  K  +  W +++     + 
Sbjct: 271 HGYAIR-AGFAKLVNISTALADMYSKCGSVETARLIFDGMDQK-TVVSWNSMMDGYVQNG 328

Query: 491 NVTLAEVVVEGLVELKADDCGLYVLLS-NIYADAGMWEHALRIRKMM 536
               A  V E ++E   D  G+ ++ + +  AD G  E    + K +
Sbjct: 329 EPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFV 375



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 2/141 (1%)

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
           + QT L+ ++ K GS++EA R+F  +  K    Y+ M+ G   N   E AL    +M  +
Sbjct: 82  LFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYD 141

Query: 403 GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
            +      F  +L  C  +     G  I   +  +      +   + +V++ ++  +++ 
Sbjct: 142 DVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITN-SFAANVFAMTGVVNMYAKCRQIDD 200

Query: 463 ALNIVESMPMKPNLALWGTLL 483
           A  + + MP + +L  W T++
Sbjct: 201 AYKMFDRMPER-DLVSWNTII 220


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 199/562 (35%), Positives = 310/562 (55%), Gaps = 49/562 (8%)

Query: 45  FTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMK 104
           FT + ++  LT    L  D+A+ LF  + + +    N+M+ G+ Q    ++AL ++  M 
Sbjct: 87  FTWNSVVTGLTKLGFL--DEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMH 144

Query: 105 RKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG 164
           ++G +++ YT+   L AC  L  +  G +IH  + K   L DV++ + L+ MYSKCG++ 
Sbjct: 145 KEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVN 204

Query: 165 CARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVF----------DEMP--------- 205
            A+ VF+    +++VSWN ++  + + G   +A +VF          DE+          
Sbjct: 205 DAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACA 264

Query: 206 ---------------------QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
                                + D I  +  +D Y  K   I  AR +F+ MPI+++I+ 
Sbjct: 265 SLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMY-AKCSRIKEARFIFDSMPIRNVIAE 323

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
            SM+ GYA      AA+ +F +M ERNV SW+ +I GY Q+G  +EAL LF  +  + V 
Sbjct: 324 TSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVC 383

Query: 305 PDVISVMGAISACAQVGALDLGKWIHV------FMKRSRITMDMIVQTALIDMYMKCGSL 358
           P   +    + ACA +  L LG   HV      F  +S    D+ V  +LIDMY+KCG +
Sbjct: 384 PTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCV 443

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
           +E   +F  M +++ +S+N MI G   NG+G EAL+ F +M   G   D +  +GVL AC
Sbjct: 444 EEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSAC 503

Query: 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
            H+G   EG   F SM R  G+ P  +HY+C+VDLL RAG LE+A +I+E MP++P+  +
Sbjct: 504 GHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVI 563

Query: 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
           WG+LL AC+ H+N+TL + V E L E++  + G YVLLSN+YA+ G W  A+ +RK+MRK
Sbjct: 564 WGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVRKLMRK 623

Query: 539 RKIKKETGRSVIEIDGNIKEFV 560
             + K+ G S I+I G+   F+
Sbjct: 624 EGVTKQPGCSWIKIPGHAHVFM 645



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/427 (27%), Positives = 203/427 (47%), Gaps = 76/427 (17%)

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           +H  V+K GF  +VF+ N LI  Y+KCG +   R +F+    +++ +WN V+ G  + G 
Sbjct: 42  VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGF 101

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRK---------------KKG-------------- 224
           + +A  +F  MP++D  +W+ M+ G+ +               K+G              
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSA 161

Query: 225 -----DISSA---RILFEHMP-IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
                D++       L    P + D+   ++++D Y+K G++  AQQ+F+EM +RNV SW
Sbjct: 162 CSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSW 221

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV-FMK 334
           + +I  Y Q+G   EAL +F+ ML   V PD +++   ISACA + A+ +G+ +H   +K
Sbjct: 222 NSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVK 281

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYS--------------------------- 367
             ++  D+I+  A +DMY KC  + EAR IF S                           
Sbjct: 282 MDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARL 341

Query: 368 ----MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS---- 419
               M ++NV+S+N +IAG   NG  EEAL  F  ++ E +      F  +L AC+    
Sbjct: 342 MFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLAD 401

Query: 420 -HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
            H G+    + +    K   G E  +   + L+D+  + G +E+   +   M M+ +   
Sbjct: 402 LHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM-MERDCVS 460

Query: 479 WGTLLLA 485
           W  +++ 
Sbjct: 461 WNAMIIG 467


>gi|449459744|ref|XP_004147606.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Cucumis sativus]
 gi|449529850|ref|XP_004171911.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Cucumis sativus]
          Length = 580

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 204/577 (35%), Positives = 309/577 (53%), Gaps = 38/577 (6%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLIT-EPFTLSQLLMSLTSPNTLNMDQAERLF 69
           L + L   L  S       QI AQ+  N L   E   + Q+  S  +   +     +R+ 
Sbjct: 2   LGSDLKFFLNSSVHVKQATQIHAQILVNGLPNLESCLVRQITRSQFTCARIVSRYLQRIL 61

Query: 70  NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV 129
           +    P+ +     +R ++Q+    +A++ YV M+R GL    +     L+ACG +M   
Sbjct: 62  HHSRNPDAFTWACAVRFFSQNGQFMEAIAHYVQMQRLGLHPSTFAVSSTLRACGRIMCKF 121

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
            G  IH +V K+GF   V+V   L+  YSK G MG A+ VF+    K++VSWN +L G+V
Sbjct: 122 RGWCIHAQVYKLGFCRCVYVQTALVDFYSKLGDMGFAQKVFDEMTEKNVVSWNSILSGYV 181

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMID 249
           + G +  A+++FDEMP KDAISW+ M+ G+    G++  A  LF+ M  K   SWN+MI 
Sbjct: 182 KIGNLVDAQKLFDEMPVKDAISWNSMLTGF-SNSGNMDRACCLFQQMGEKSSASWNAMIG 240

Query: 250 GYAKIGDLVAAQQLFNEMPERN---------------------------------VFSWS 276
           GY   GD+ AA+ LF+ MP RN                                 + S++
Sbjct: 241 GYVNCGDMKAARNLFDVMPNRNNVTRITLIAGYSKLGEVNSAYELFDKMEESEKELLSFN 300

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQ--GVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
            MI  Y+Q+  P +AL LF  ML     ++PD ++    ISAC Q+G L  G WI  +M+
Sbjct: 301 AMIACYSQNSMPNKALELFNLMLQPHVNIQPDEMTFASVISACTQLGNLSYGTWIESYME 360

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
           +  I +D  + TAL+D+Y K G+++ A  +F  + K+++++Y+ MI G G+N    EA++
Sbjct: 361 KLGIELDDHLATALVDLYAKSGNINRAFELFNGLKKRDLVAYSAMIFGCGINSKAHEAIR 420

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
            F +M    I  + + + G+L A +H+GL  EGY  F SMK H G+ P  +HY  +VDLL
Sbjct: 421 LFKEMLRVNICPNLVTYAGLLTAYNHAGLVDEGYLCFSSMKDH-GLAPLADHYGIMVDLL 479

Query: 455 SRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYV 514
            RAG LE+A  ++ SMP++PN  +WG LL AC+ H NV L E+      +L  D  G   
Sbjct: 480 GRAGRLEEAYELIHSMPVQPNAGVWGALLHACKLHNNVELGEIAARNCSKLVTDTTGYRS 539

Query: 515 LLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
           LL+NIY+    W+ A R+RK M  +   K +G S +E
Sbjct: 540 LLANIYSSMERWDDAKRMRKAMGNKIFAKISGCSWME 576


>gi|414587316|tpg|DAA37887.1| TPA: hypothetical protein ZEAMMB73_488455 [Zea mays]
          Length = 622

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 179/473 (37%), Positives = 284/473 (60%), Gaps = 3/473 (0%)

Query: 79  MHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEV 138
           + N ++    + +    AL+ + N+ R+  L D++++P +L+AC  +  L  G  +H   
Sbjct: 150 LRNAVLASLARHAPLHAALTEF-NLLRQAALPDSFSFPCLLRACARVSCLPAGRALHAAA 208

Query: 139 VKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAR 198
           +++G   D+F+   LI  Y +CG    AR++F   +I   VSW  ++  +V  G +  AR
Sbjct: 209 IRLGVHADLFIRTALIQFYGRCGVADAARALFYQIDIPSEVSWTAIIVAYVNNGGIIDAR 268

Query: 199 EVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLV 258
            +FD MPQ++ + W++M+DGY  K GD+  AR LF+ MP +   +  S+I GYAK G++ 
Sbjct: 269 ALFDTMPQRNVVHWNVMVDGY-VKCGDLEGARRLFDEMPERTATACTSLIGGYAKAGNME 327

Query: 259 AAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACA 318
           AA+ LF+++ +R+VFSWS MI GYAQ+G P EAL  F E   QG+ PD + V+G +SAC+
Sbjct: 328 AARLLFDKLEDRDVFSWSAMISGYAQNGYPGEALRTFDEFQGQGIHPDELVVVGLMSACS 387

Query: 319 QVGALDLGKWIHVFMKRSRITMDMI-VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYN 377
           Q+G + L  WI  ++ +  I M+   V   L++M  KCG+L+ A  +F SM  ++V SY 
Sbjct: 388 QLGNIRLASWIEDYITKYSIDMNNAHVLAGLVNMNAKCGNLERATFLFESMPVRDVFSYC 447

Query: 378 VMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRH 437
            ++ G  ++G  ++A+K F++M  EG+  D+ +F  VL AC H+GL  EG + F  MK  
Sbjct: 448 SLMQGYCLHGSADKAVKLFSRMLLEGLTPDNAVFTIVLTACCHAGLVEEGKKFFDIMKNV 507

Query: 438 CGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEV 497
             + P  EHY+CLV+LL R G LE A  ++ SMP KP+   WG LL  C+ H N+ L ++
Sbjct: 508 YLMVPSGEHYACLVNLLGRCGMLEDAYWLIMSMPGKPHPGAWGALLGGCKLHCNIELGKI 567

Query: 498 VVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
             + L E++ D+ G YV LSN+YA+   W     +R  M  ++I K  GR+++
Sbjct: 568 AAKKLFEIEPDNAGNYVSLSNMYANIDRWGDVSEVRAEMTGKRITKIAGRTLV 620



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 135/317 (42%), Gaps = 48/317 (15%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            A  LF+ + Q N    N M+ GY +  + + A   +  M  +              AC 
Sbjct: 266 DARALFDTMPQRNVVHWNVMVDGYVKCGDLEGARRLFDEMPER-----------TATAC- 313

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
                                        LIG Y+K G+M  AR +F+  E +D+ SW+ 
Sbjct: 314 ---------------------------TSLIGGYAKAGNMEAARLLFDKLEDRDVFSWSA 346

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARIL--FEHMPIKDL 241
           ++ G+ + G  G+A   FDE   +      +++ G       + + R+    E    K  
Sbjct: 347 MISGYAQNGYPGEALRTFDEFQGQGIHPDELVVVGLMSACSQLGNIRLASWIEDYITKYS 406

Query: 242 ISWNS------MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
           I  N+      +++  AK G+L  A  LF  MP R+VFS+  ++ GY  HG+  +A+ LF
Sbjct: 407 IDMNNAHVLAGLVNMNAKCGNLERATFLFESMPVRDVFSYCSLMQGYCLHGSADKAVKLF 466

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA-LIDMYMK 354
             ML +G+ PD       ++AC   G ++ GK     MK   + +      A L+++  +
Sbjct: 467 SRMLLEGLTPDNAVFTIVLTACCHAGLVEEGKKFFDIMKNVYLMVPSGEHYACLVNLLGR 526

Query: 355 CGSLDEARRIFYSMTKK 371
           CG L++A  +  SM  K
Sbjct: 527 CGMLEDAYWLIMSMPGK 543



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 74/145 (51%), Gaps = 1/145 (0%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           NM+ A  LF+++   + +  + MI GY Q+  P +AL  +   + +G+  D      ++ 
Sbjct: 325 NMEAARLLFDKLEDRDVFSWSAMISGYAQNGYPGEALRTFDEFQGQGIHPDELVVVGLMS 384

Query: 121 ACGVLMGLVEGTEIHGEVVKMGF-LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           AC  L  +   + I   + K    + +  V+ GL+ M +KCG++  A  +FE   ++D+ 
Sbjct: 385 ACSQLGNIRLASWIEDYITKYSIDMNNAHVLAGLVNMNAKCGNLERATFLFESMPVRDVF 444

Query: 180 SWNLVLRGFVECGEMGKAREVFDEM 204
           S+  +++G+   G   KA ++F  M
Sbjct: 445 SYCSLMQGYCLHGSADKAVKLFSRM 469



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 17/182 (9%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N+++A  LF  +   + + + ++++GY    +  KA+  +  M  +GL  DN  +  VL 
Sbjct: 427 NLERATFLFESMPVRDVFSYCSLMQGYCLHGSADKAVKLFSRMLLEGLTPDNAVFTIVLT 486

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNG-----LIGMYSKCGHMGCARSVFEGSEI 175
           AC    GLVE  +   +++K  +L    V +G     L+ +  +CG +  A  +      
Sbjct: 487 AC-CHAGLVEEGKKFFDIMKNVYL---MVPSGEHYACLVNLLGRCGMLEDAYWLIMSMPG 542

Query: 176 KDLV-SWNLVLRGF-VECG-EMGK--AREVFDEMPQK--DAISWSIMIDGYRKKKGDISS 228
           K    +W  +L G  + C  E+GK  A+++F+  P    + +S S M      + GD+S 
Sbjct: 543 KPHPGAWGALLGGCKLHCNIELGKIAAKKLFEIEPDNAGNYVSLSNMYANI-DRWGDVSE 601

Query: 229 AR 230
            R
Sbjct: 602 VR 603


>gi|255575758|ref|XP_002528778.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531781|gb|EEF33600.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 518

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 189/439 (43%), Positives = 272/439 (61%), Gaps = 5/439 (1%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           QI  QL    L   P    + +  L +     +     L++ I QP+ ++ NT+IR +  
Sbjct: 72  QIHTQLIVLGLFQHPLAAGRYIKKLCNTYFNLLSHCVYLYDYIEQPDAFICNTIIRCFVS 131

Query: 90  SSN-PQKALSFYVN-MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV 147
            +N P  AL FY + M  K +L + YT+P ++K C  +  L EG + H  VVK GF  D 
Sbjct: 132 LNNDPFGALRFYYDKMIAKWVLPNRYTFPLLVKVCADIGSLKEGQKAHACVVKFGFEFDA 191

Query: 148 FVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK 207
           +V N L+ MYS CG +  AR +FE   + DLVSWN ++ G+V+ G++G ARE+FDEMP++
Sbjct: 192 YVRNSLLHMYSACGRVLDARLLFESGFVLDLVSWNSMIIGYVKNGDIGLARELFDEMPER 251

Query: 208 DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
           DA SW+ MI GY    GD+ +A+ LF++MP +D++SWN MIDGYAKI ++  A+ LFN+M
Sbjct: 252 DAFSWNSMISGY-VGAGDVEAAKKLFDNMPSRDVVSWNCMIDGYAKIRNVSVARWLFNQM 310

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLG 326
           P RN+ SW+IM+  Y +  N  E L LF  M+ +  +RP+  S+M  ++ACA    LDLG
Sbjct: 311 PFRNIVSWNIMLALYLKCKNYGECLKLFDRMIEERELRPNKASLMSVLTACANFRRLDLG 370

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
           KWIH ++K + +  D ++ TAL+ MY KCG +D AR IF  M  K+V+S+N MI G  +N
Sbjct: 371 KWIHSYIKDNEVESDELLSTALLTMYAKCGMMDFARHIFTKMPHKSVVSWNSMIMGYAIN 430

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
           G  E+AL+ F +ME   +  +   F+ VL ACSH+ L  EG+  F  M+R   IEPK+EH
Sbjct: 431 GHAEKALETFLEMEKSSMMPNAATFVSVLSACSHAELLLEGWWYFDLMQRKYKIEPKVEH 490

Query: 447 YSCLVDLLSRA-GELEQAL 464
             C+VDLL +A   LE +L
Sbjct: 491 CGCMVDLLRQAEAVLEDSL 509



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 65/318 (20%), Positives = 133/318 (41%), Gaps = 49/318 (15%)

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGN-PKEAL-YLFREMLCQGVRPDVISVMGAISACAQV 320
           L++ + + + F  + +I  +    N P  AL + + +M+ + V P+  +    +  CA +
Sbjct: 110 LYDYIEQPDAFICNTIIRCFVSLNNDPFGALRFYYDKMIAKWVLPNRYTFPLLVKVCADI 169

Query: 321 GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMI 380
           G+L  G+  H  + +     D  V+ +L+ MY  CG + +AR +F S    +++S+N MI
Sbjct: 170 GSLKEGQKAHACVVKFGFEFDAYVRNSLLHMYSACGRVLDARLLFESGFVLDLVSWNSMI 229

Query: 381 AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGI 440
            G   NG    A + F +M      +D   +  ++     +G      ++F +M      
Sbjct: 230 IGYVKNGDIGLARELFDEMPE----RDAFSWNSMISGYVGAGDVEAAKKLFDNMPSR--- 282

Query: 441 EPKLEHYSCLVDLLSRAGELEQALNIVESMP----------------------------- 471
              +  ++C++D  ++   +  A  +   MP                             
Sbjct: 283 --DVVSWNCMIDGYAKIRNVSVARWLFNQMPFRNIVSWNIMLALYLKCKNYGECLKLFDR 340

Query: 472 ------MKPNLALWGTLLLACRNHQNVTLAEVVVEGLV--ELKADDCGLYVLLSNIYADA 523
                 ++PN A   ++L AC N + + L + +   +   E+++D+     LL+ +YA  
Sbjct: 341 MIEERELRPNKASLMSVLTACANFRRLDLGKWIHSYIKDNEVESDELLSTALLT-MYAKC 399

Query: 524 GMWEHALRIRKMMRKRKI 541
           GM + A  I   M  + +
Sbjct: 400 GMMDFARHIFTKMPHKSV 417


>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 190/583 (32%), Positives = 319/583 (54%), Gaps = 48/583 (8%)

Query: 27  HILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRG 86
           H+ Q LA L    L T P  L  LL   ++        A  LF+ + +P   +  T+I  
Sbjct: 11  HLPQHLAGL----LKTRP--LHDLLSDASTSRA-----ARHLFDAVPRPTPALCGTLISA 59

Query: 87  YTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCD 146
            ++  + Q+ L  + ++ R+G  V     P V+K+C +L    +G ++H   +  G L D
Sbjct: 60  LSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVRGLLGD 119

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
           +FV   L+  Y+K G M CA  VF+   +KD +  N ++ G+ + G++ KAR +FD M +
Sbjct: 120 IFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVR 179

Query: 207 KDAISWSIMIDGYRK----------------------------------KKGDISS---A 229
           + + SW+ MI  Y                                    K GD+ +   A
Sbjct: 180 RTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWA 239

Query: 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
           R L     ++++I   ++++ Y K   +  A++ F+ M +R+V +WS MI GYAQ+G P 
Sbjct: 240 RSLIAEQDLQNMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPH 299

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           E+L LF  M     +P+ ++++G +SACAQ+G+ +LG  I   ++   + +   + +ALI
Sbjct: 300 ESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALI 359

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           DMY KCG +  AR +F  M  K VI++N M+ GL +NGF ++A+  + +M  E +  +++
Sbjct: 360 DMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEI 419

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            F+ +L AC+H+GL  +G   F+ MK    + P++EH +C+VDLL ++G L +A   +  
Sbjct: 420 TFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICD 479

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           M ++PN  +W TLL ACR H +V LA++    L+ L+ D+  +YVLLSNIYADAG+W   
Sbjct: 480 MEVEPNAVIWSTLLSACRAHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDV 539

Query: 530 LRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
             IR +MR + ++K +  S IE+DG + +F+  + +  +S E+
Sbjct: 540 REIRDLMRSKNVQKLSAYSWIELDGEVHKFLVQDTYHPKSAEI 582


>gi|296088310|emb|CBI36755.3| unnamed protein product [Vitis vinifera]
          Length = 751

 Score =  355 bits (910), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 204/571 (35%), Positives = 321/571 (56%), Gaps = 28/571 (4%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           N ++SLL+  KT   + ++   + T  +I +   LS+L+      ++ N++ A+ +FNQI
Sbjct: 6   NSILSLLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQI 65

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
            +P+ Y+ N+MI+GY+ S +P +AL+ Y  M++KG   D++T+PFVLKAC ++ G   G 
Sbjct: 66  DRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQ 125

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
            +H  +VK GF  DV+    L+ MY+ CG M  A  VF+     ++V+W  ++ G +   
Sbjct: 126 CVHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISND 185

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA 252
              +A  V+     KD   WS+  +       +I+   +L      +DL +   + D   
Sbjct: 186 CPSEAVRVY-----KDMELWSVAPN-------EITMVNVLVACARSRDLNAGRWVHDRTG 233

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYA-----QHGNPKEALYLFREMLCQGVRPDV 307
           ++G        F      NV   + ++D YA     Q+G   EAL LF +M   G  PD 
Sbjct: 234 QMG-----LDPFQSNSNFNVILATAIVDMYAKCAYNQYGQANEALDLFSDMRIAGFDPDK 288

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
            + +  I ACA +GAL  G+ +H ++ ++ +T D  + TAL+DMY K G  + A+++F  
Sbjct: 289 ATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGDAERAQQVFSE 348

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQM-ETEGIPKDDLIFLGVLIACSHSGLATE 426
           + KK+V ++  +I GL M+G GEEAL  F +M E   +  D++ ++GVL ACSH G   +
Sbjct: 349 LQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLSACSHVGKVED 408

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G   F SMK   GIEP  +HY C+VDLLSRAG L +A  +VE MP++PN A+W  LL  C
Sbjct: 409 GKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEPNTAIWSALLNGC 468

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           + +QN+ +A+ V   + EL+ D  G+YVLLSNIYA A  WE     R++M++RKI+K  G
Sbjct: 469 KIYQNIDVADRVRRRVRELEVDGSGVYVLLSNIYAGACRWEEVKMARELMKERKIQKSLG 528

Query: 547 RSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
            S +E+     + V G + +V  +  E   Q
Sbjct: 529 HSSVEM-----KMVGGALHNVSVQRAESTGQ 554


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 199/556 (35%), Positives = 314/556 (56%), Gaps = 48/556 (8%)

Query: 47  LSQLLMSLTSPNTLNMDQAERLFNQIYQ-PNTYMHNTMIRGYTQSSNPQKALSFYVNMKR 105
           +S+LL      +  N++ A  LFN     PN Y+ NTMI G+  S+  +KA + Y +M +
Sbjct: 1   MSRLLFFSAVSHPENLELAILLFNHFTPYPNLYIFNTMILGFPFSN--EKAFTIYRSMLQ 58

Query: 106 KGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC-DVFVVNGLIGMYSKCGHMG 164
            G   D  T+ ++L+    +    E  +IH   +  G L  + ++ N LI  Y   G   
Sbjct: 59  NGTYPDRQTFLYLLQTTKFV---AEVKQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFE 115

Query: 165 CARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ------------------ 206
           CAR +F+    +++VS+N ++ GF + G +    E+F +M                    
Sbjct: 116 CARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCG 175

Query: 207 ---------------------KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWN 245
                                 + I ++ ++D Y  K  ++  AR +F+    KD +SWN
Sbjct: 176 QLGETKLGKSVHAQIEKSIGSSNLILYNALLDMY-VKCNELKLARKVFDGPMEKDTVSWN 234

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           ++I GYAK+G+L  A  LFN++P R++ SW+ +I GYAQ+G+      LF  M  + V+P
Sbjct: 235 TIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKP 294

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D ++++  ISA A++GALD G+WIH    +    ++    +ALIDMY KCGS++ A  IF
Sbjct: 295 DKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIF 354

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
             + +K+V ++  MI G   +GFG +AL+ F+ M+ E  P +D+ F+ VL ACSHSGL  
Sbjct: 355 NQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAETKP-NDVTFVSVLAACSHSGLVD 413

Query: 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
           EG +IF SMK+   IEP +EHY CLVDLL R+G L  A+ ++E MPM+P+ ++WG +L A
Sbjct: 414 EGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSA 473

Query: 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
           CR H+N+ LAE  +  L++L+ +  G Y+LLSN+YA  G W ++  IR++M  R +KK  
Sbjct: 474 CRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIA 533

Query: 546 GRSVIEIDGNIKEFVS 561
           G S + +DG + +F +
Sbjct: 534 GCSSVAVDGMVHDFTA 549



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 192/391 (49%), Gaps = 45/391 (11%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           +   + LLQ +K    + QI        L+++   L   L+     N    + A +LF++
Sbjct: 65  RQTFLYLLQTTKFVAEVKQIHCHALVFGLLSKEEYLRNSLIKRYVDNGC-FECARQLFDE 123

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           +   N   +NTMI G+ +  N    L  + +M+  GL  D++T   +L  CG L     G
Sbjct: 124 MSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLG 183

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
             +H ++ K     ++ + N L+ MY KC  +  AR VF+G   KD VSWN ++ G+ + 
Sbjct: 184 KSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKV 243

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM----------PIKDL 241
           GE+  A ++F+++P +D +SW+ +I GY  + GD  + + LF  M           I +L
Sbjct: 244 GELELACDLFNQIPTRDIVSWNSLISGY-AQNGDYVTVKCLFTRMFAENVKPDKVTIVNL 302

Query: 242 IS------------W-----------------NSMIDGYAKIGDLVAAQQLFNEMPERNV 272
           IS            W                 +++ID Y K G +  A  +FN++PE++V
Sbjct: 303 ISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDV 362

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
            +W+ MI G+A HG   +AL LF  M  +  +P+ ++ +  ++AC+  G +D G  I   
Sbjct: 363 TTWTTMITGFAFHGFGNKALELFSVMQAE-TKPNDVTFVSVLAACSHSGLVDEGLKIFSS 421

Query: 333 MKRSRITMDMIVQT--ALIDMYMKCGSLDEA 361
           MK+ R +++  V+    L+D+  + G L +A
Sbjct: 422 MKK-RYSIEPGVEHYGCLVDLLCRSGRLLDA 451


>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
          Length = 608

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 190/583 (32%), Positives = 319/583 (54%), Gaps = 48/583 (8%)

Query: 27  HILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRG 86
           H+ Q LA L    L T P  L  LL   ++        A  LF+ + +P   +  T+I  
Sbjct: 11  HLPQHLAGL----LKTRP--LHDLLSDASTSRA-----ARHLFDAVPRPTPALCGTLISA 59

Query: 87  YTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCD 146
            ++  + Q+ L  + ++ R+G  V     P V+K+C +L    +G ++H   +  G L D
Sbjct: 60  LSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAILAASRQGKQVHCHAIVRGLLGD 119

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
           +FV   L+  Y+K G M CA  VF+   +KD +  N ++ G+ + G++ KAR +FD M +
Sbjct: 120 IFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVR 179

Query: 207 KDAISWSIMIDGYRK----------------------------------KKGDISS---A 229
           + + SW+ MI  Y                                    K GD+ +   A
Sbjct: 180 RTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKWA 239

Query: 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
           R L     ++++I   ++++ Y K   +  A++ F+ M +R+V +WS MI GYAQ+G P 
Sbjct: 240 RSLIAEQDLQNMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPH 299

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           E+L LF  M     +P+ ++++G +SACAQ+G+ +LG  I   ++   + +   + +ALI
Sbjct: 300 ESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALI 359

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           DMY KCG +  AR +F  M  K VI++N M+ GL +NGF ++A+  + +M  E +  +++
Sbjct: 360 DMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEI 419

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            F+ +L AC+H+GL  +G   F+ MK    + P++EH +C+VDLL ++G L +A   +  
Sbjct: 420 TFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICD 479

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           M ++PN  +W TLL ACR H +V LA++    L+ L+ D+  +YVLLSNIYADAG+W   
Sbjct: 480 MEVEPNAVIWSTLLSACRAHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDV 539

Query: 530 LRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
             IR +MR + ++K +  S IE+DG + +F+  + +  +S E+
Sbjct: 540 REIRDLMRSKNVQKLSAYSWIELDGEVHKFLVQDTYHPKSAEI 582


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 188/524 (35%), Positives = 305/524 (58%), Gaps = 7/524 (1%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A R+F+ +   +     T+   Y +S   Q++L  Y  M ++G+     TY  VL ACG 
Sbjct: 199 ARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGS 258

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L  L +G +IH ++V+     DV V   L  MY KCG +  AR VFE    +D+++WN +
Sbjct: 259 LAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTM 318

Query: 185 LRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMP--- 237
           + G V+ G++ +A  +F  M ++    D +++  ++    +  G      I    +    
Sbjct: 319 IGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGL 378

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
           + D+   N++I+ Y+K G +  A+Q+F+ MP+R+V SW+ ++ GYA  G   E+   F++
Sbjct: 379 VSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKK 438

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
           ML QGV  + I+ M  + AC+   AL  GK IH  + ++ I  D+ V  AL+ MY KCGS
Sbjct: 439 MLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGS 498

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
           +++A R+   M+ ++V+++N +I GL  NG G EAL+ F  M++E +  +   F+ V+ A
Sbjct: 499 VEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSA 558

Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
           C    L  EG R F SM++  GI P  +HY+C+VD+L+RAG L +A +++ +MP KP+ A
Sbjct: 559 CRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAA 618

Query: 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537
           +WG LL ACR H NV + E   E  ++L+  + G YV LS IYA AGMW    ++RK+M+
Sbjct: 619 MWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMK 678

Query: 538 KRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
           +R +KKE GRS IE+ G +  FV+G+    ++EE+   +++  K
Sbjct: 679 ERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTK 722



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/431 (29%), Positives = 218/431 (50%), Gaps = 11/431 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++++A RLF++    +    N MI GY      Q+A + +  M+++GL  D +T+  +L 
Sbjct: 94  SVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILS 153

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC     L  G E+H  V++ G   +  V N LI MY+KCG +  AR VF+    +D VS
Sbjct: 154 ACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVS 213

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRK----KKGDISSARIL 232
           W  +   + E G   ++ + +  M Q+      I++  ++         +KG    A+I+
Sbjct: 214 WTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIV 273

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
            E     D+    ++   Y K G +  A+++F  +P R+V +W+ MI G    G  +EA 
Sbjct: 274 -ESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAH 332

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            +F  ML + V PD ++ +  +SACA+ G L  GK IH    +  +  D+    ALI+MY
Sbjct: 333 GMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMY 392

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            K GS+ +AR++F  M K++V+S+  ++ G    G   E+   F +M  +G+  + + ++
Sbjct: 393 SKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYM 452

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            VL ACS+      G  I   + +  GI   L   + L+ +  + G +E A+ + E M  
Sbjct: 453 CVLKACSNPVALKWGKEIHAEVVK-AGIFADLAVANALMSMYFKCGSVEDAIRVSEGMST 511

Query: 473 KPNLALWGTLL 483
           + ++  W TL+
Sbjct: 512 R-DVVTWNTLI 521



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 205/389 (52%), Gaps = 11/389 (2%)

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           + +KG  VD+Y Y  +L++C     L  G ++H  +++ G   +V+++N L+ +Y  CG 
Sbjct: 35  LHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGS 94

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDG 218
           +  AR +F+    K +VSWN+++ G+   G   +A  +F  M Q+    D  ++  ++  
Sbjct: 95  VNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSA 154

Query: 219 YRKKK----GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
                    G     R++   +     +  N++I  YAK G +  A+++F+ M  R+  S
Sbjct: 155 CSSPAALNWGREVHVRVMEAGLANNATVG-NALISMYAKCGSVRDARRVFDAMASRDEVS 213

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W+ +   YA+ G  +E+L  +  ML +GVRP  I+ M  +SAC  + AL+ GK IH  + 
Sbjct: 214 WTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIV 273

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
            S    D+ V TAL  MY+KCG++ +AR +F  +  ++VI++N MI GL  +G  EEA  
Sbjct: 274 ESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHG 333

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
            F +M  E +  D + +L +L AC+  G    G  I     +  G+   +   + L+++ 
Sbjct: 334 MFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKD-GLVSDVRFGNALINMY 392

Query: 455 SRAGELEQALNIVESMPMKPNLALWGTLL 483
           S+AG ++ A  + + MP K ++  W  L+
Sbjct: 393 SKAGSMKDARQVFDRMP-KRDVVSWTALV 420



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 115/238 (48%), Gaps = 13/238 (5%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +M  A ++F+++ + +      ++ GY       ++ S +  M ++G+  +  TY  VLK
Sbjct: 397 SMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLK 456

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC   + L  G EIH EVVK G   D+ V N L+ MY KCG +  A  V EG   +D+V+
Sbjct: 457 ACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVT 516

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKD----AISWSIMIDGYRKK------KGDISSAR 230
           WN ++ G  + G   +A + F+ M  ++    A ++  ++   R +      +   +S R
Sbjct: 517 WNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMR 576

Query: 231 ILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
             +  +P +    +  M+D  A+ G L  A+ +   MP + +   W  ++     HGN
Sbjct: 577 KDYGIVPTEK--HYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGN 632


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 198/576 (34%), Positives = 315/576 (54%), Gaps = 71/576 (12%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           L+S+L      + I Q+ A +  N L    + L++L+  LT  +         +F Q+  
Sbjct: 45  LMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNY 104

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           PN ++   MIRGY       ++ +FY  M+R G+   ++T+  + KACG  + +  G ++
Sbjct: 105 PNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQV 164

Query: 135 HGEVVKMG-FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           H + + +G F  D++V N +I +                               +V+CG 
Sbjct: 165 HAQTILIGGFASDLYVGNSMIDL-------------------------------YVKCGF 193

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAK 253
           +G AR+V                                F+ M  +D++SW  +I  YAK
Sbjct: 194 LGCARKV--------------------------------FDEMSERDVVSWTELIVAYAK 221

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313
            GD+ +A  LF+++P +++ +W+ M+ GYAQ+G PKEAL  F++M   G+  D +++ G 
Sbjct: 222 YGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGV 281

Query: 314 ISACAQVGALDLGKWIHVFMKRSRI--TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
           ISACAQ+GA+    WI    +RS    + +++V +ALIDMY KCGS DEA ++F  M ++
Sbjct: 282 ISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKER 341

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           NV SY+ MI G  M+G    AL+ F  M    I  + + F+G+L ACSH+GL  +G ++F
Sbjct: 342 NVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLF 401

Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN 491
             M++  G+ P  +HY+C+VDLL RAG LE+AL++V++MPM+PN  +WG LL ACR H N
Sbjct: 402 AKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGN 461

Query: 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
             +A++    L +L+ +  G Y+LLSNIYA AG WE   ++RK++R++  KK  G S  E
Sbjct: 462 PDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFE 521

Query: 552 -IDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586
             +G I +F +G+    +S E    I+  +K  IER
Sbjct: 522 GKNGEIHDFFAGDTTHPRSSE----IRQALKQLIER 553


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 209/578 (36%), Positives = 309/578 (53%), Gaps = 93/578 (16%)

Query: 16  VSLLQIS----KTTTHILQILAQLTTNDLITEPFTLSQL---LMSLTSP-NTLNMDQAE- 66
           +SLL +S    + +TH+L            T PF L QL   L+   SP ++L + +   
Sbjct: 5   LSLLHVSPLHHRPSTHLLHNF---------TSPFELKQLHAHLLKTNSPLSSLPLSRVAS 55

Query: 67  -----------RLFNQIYQPNTYMH-NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYT 114
                      +L  Q+   +   H NT +R + +  +P  A+S +  ++   +  D+YT
Sbjct: 56  VCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYT 115

Query: 115 YPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174
             FVLKAC  L+ +  G  +HG V K+G   ++F+                         
Sbjct: 116 CSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFL------------------------- 150

Query: 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFE 234
                  N+++  +  CGE+G AR+V                                F+
Sbjct: 151 ------QNMIVHLYALCGEIGVARKV--------------------------------FD 172

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
            MP +D+I+WN MI    K+GD   A +LF EMPERNV SW+ MI GYAQ G  KEA+ L
Sbjct: 173 KMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDL 232

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           F EM   G+ P+ ++V+  + ACA +G L LG+ IH F  RS    ++ V   LIDMY+K
Sbjct: 233 FLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVK 292

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG L++A RIF +M ++ V+S++ MIAGL  +G  E+AL  F +M   G+  + + F+G+
Sbjct: 293 CGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGI 352

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L ACSH G+  +G + F SM R  GI P++EHY C+VDL SRAG L++A   + +MP+ P
Sbjct: 353 LHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAP 412

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           N  +WG LL  C+ H+N+ LAE     L +L   + G YV+LSNIYA+AG WE   R+RK
Sbjct: 413 NGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRK 472

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           +MR R +KK  G S I ++G +  FV+G+    Q+EE+
Sbjct: 473 LMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQTEEI 510


>gi|147797709|emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]
          Length = 529

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 194/535 (36%), Positives = 313/535 (58%), Gaps = 22/535 (4%)

Query: 35  LTTNDLITEPFTLSQLLMSLTS---PNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSS 91
           + TN  +  P   S+L++S  S   P T ++  A R+ +QI   +TY  NT+IRGY + +
Sbjct: 1   MITNGHLHNPTLASKLVVSFASITLPGTTSV--ARRIADQIDGLDTYTWNTIIRGYLEGN 58

Query: 92  NPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVN 151
           +P++A+  Y ++++KGL VD YT  FV+KACG+   ++EG +IHG++ K+GF  +V +  
Sbjct: 59  DPEEAILIYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQT 118

Query: 152 GLIGMYS----KCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK 207
            L+ MY      CG     + +F+    +DLV WN ++  +       K REV  +M   
Sbjct: 119 ALLSMYGLFDEDCG----LQQIFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMVSS 174

Query: 208 D-------AISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAA 260
           +       A+S   +    R  +   +    + +++   D+   N++ID Y+K G +  A
Sbjct: 175 NVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEXDVFVHNALIDVYSKCGSIRDA 234

Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
            Q+F  MP RNV SW+ +I+GY+ +  P EAL  F++M  + +RPD I+V+G +  C+++
Sbjct: 235 VQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCSKL 294

Query: 321 GALDLGKWIHVFMKRSRITMDM-IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVM 379
            + +LG+WI  ++ ++ +  +   +   L+DM+ KCG++  A +IF  M +K ++S+ +M
Sbjct: 295 RSFELGEWISQYVVKTGLVKESPAIANVLMDMHAKCGNIKRACQIFDGMEEKTIVSWTIM 354

Query: 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439
           I GL M G G  AL  F QM+ EG   D L+FL +L ACSH+GL  EG+R F SM+    
Sbjct: 355 IQGLAMYGHGLSALVRFCQMQREGFKPDSLVFLSLLSACSHAGLVDEGWRCFSSMEADYH 414

Query: 440 IEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVV 499
           I P +EHY C+VD+L RAG +++A   V++MP+KP++ +W TLL AC    N++LA  V+
Sbjct: 415 IXPWMEHYGCMVDILCRAGLVDEAFKFVQNMPIKPDMIVWRTLLGACXXQGNISLANQVM 474

Query: 500 EGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI-KKETGRSVIEID 553
             L EL       YVLLSN++A    W++   +RK M  R + K++ G S IE D
Sbjct: 475 NXLCELGPKKSEDYVLLSNLFASNAEWDNVXEVRKEMGDRGVTKQDPGCSFIEAD 529


>gi|296082839|emb|CBI22140.3| unnamed protein product [Vitis vinifera]
          Length = 428

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 178/426 (41%), Positives = 271/426 (63%), Gaps = 7/426 (1%)

Query: 131 GTEIHGEVVKMGFLCD---VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
           G  IHG+V K GF C    ++V   L+  Y K G M  AR +F+    +++VSWN +L G
Sbjct: 3   GISIHGQVQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAG 62

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM 247
           +++ G+M KA  +F +MP+++  SW+ MI G+  + GDI SAR  F+ MP K+ +SW +M
Sbjct: 63  YLKAGDMEKASSLFQQMPERNFASWNAMISGH-VEFGDIDSARSFFDAMPQKNNVSWMTM 121

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ--GVRP 305
           I GY+K GD+ +A +LF+++  +++  ++ MI  YAQ+  P EAL LF  ML     V+P
Sbjct: 122 ISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQP 181

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D +++   ISAC+Q+G L  G WI  +M+R  I MD  + TAL+D+Y KCGS+D+A  +F
Sbjct: 182 DEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELF 241

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
           + + KK++++Y  MI G G+NG   +A+K F +M    I  + + F+G+L A +H+GL  
Sbjct: 242 HGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVE 301

Query: 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
           EGYR F SMK++  + P ++HY  +VDL  RAG L++AL +++SMPM+P+  +WG LLLA
Sbjct: 302 EGYRCFTSMKKY-NLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLA 360

Query: 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
           CR H NV   E+  +   EL+ D  G   LLSNIYA    W+   R+RK+ +++   K  
Sbjct: 361 CRLHNNVEFGEIAAQHCFELEPDTTGYRSLLSNIYASGERWDDVKRLRKVTKEKGFSKIP 420

Query: 546 GRSVIE 551
           G S +E
Sbjct: 421 GCSWME 426



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 74/349 (21%), Positives = 148/349 (42%), Gaps = 81/349 (23%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +M+ A ++F+++ + N    N+M+ GY ++ + +KA S +  M  +              
Sbjct: 37  DMEIARKMFDEMAERNVVSWNSMLAGYLKAGDMEKASSLFQQMPERNFA----------- 85

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
                                         N +I  + + G +  ARS F+    K+ VS
Sbjct: 86  ----------------------------SWNAMISGHVEFGDIDSARSFFDAMPQKNNVS 117

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILF------- 233
           W  ++ G+ +CG++  A E+FD++  KD + ++ MI  Y +     + A  LF       
Sbjct: 118 WMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNS-RPNEALNLFNNMLNPY 176

Query: 234 -----EHMPIKDLIS------------W-----------------NSMIDGYAKIGDLVA 259
                + M +  +IS            W                  +++D YAK G +  
Sbjct: 177 VNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDK 236

Query: 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
           A +LF+ + ++++ +++ MI G   +G   +A+ LF EM+   + P+ I+ +G ++A   
Sbjct: 237 AYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNH 296

Query: 320 VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
            G ++ G      MK+  +   +     ++D++ + G L EA  +  SM
Sbjct: 297 AGLVEEGYRCFTSMKKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSM 345



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 100/220 (45%), Gaps = 15/220 (6%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV--DNYTYPFV 118
           ++D A  LF+Q+   +  + N MI  Y Q+S P +AL+ + NM    + V  D  T   V
Sbjct: 130 DVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASV 189

Query: 119 LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDL 178
           + AC  L  L  G  I   + ++G   D  +   L+ +Y+KCG +  A  +F G   KDL
Sbjct: 190 ISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDL 249

Query: 179 VSWNLVLRGFVECGEMGKARE---VFDEMPQKDAISWSIMIDGY---RKKKGDISSARIL 232
           V++  ++ G   CG  GKA +   +FDEM        SI   G        G +      
Sbjct: 250 VAYTAMILG---CGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYRC 306

Query: 233 FEHMPIKDLIS----WNSMIDGYAKIGDLVAAQQLFNEMP 268
           F  M   +L+     +  M+D + + G L  A +L   MP
Sbjct: 307 FTSMKKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMP 346


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 187/513 (36%), Positives = 299/513 (58%), Gaps = 7/513 (1%)

Query: 67  RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
           ++F ++   +    NTMI G  +  N ++A   Y  M+R+G++ +  TY  +L AC    
Sbjct: 401 QVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPT 460

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
            L  G EIH  VVK GF+ D+ V N LI MY++CG +  AR +F     KD++SW  ++ 
Sbjct: 461 ALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIG 520

Query: 187 GFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARI---LFEHMPIK 239
           G  + G   +A  VF +M Q     + ++++ +++            RI   + E     
Sbjct: 521 GLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLAT 580

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           D    N++++ Y+  G +  A+Q+F+ M +R++ +++ MI GYA H   KEAL LF  + 
Sbjct: 581 DAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQ 640

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
            +G++PD ++ +  ++ACA  G+L+  K IH  + +     D  +  AL+  Y KCGS  
Sbjct: 641 EEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFS 700

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           +A  +F  M K+NVIS+N +I G   +G G++ L+ F +M+ EGI  D + F+ +L ACS
Sbjct: 701 DALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACS 760

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           H+GL  EG R F SM R  GI P +EHY C+VDLL RAG+L++   ++++MP + N  +W
Sbjct: 761 HAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIW 820

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
           G LL ACR H NV +AE   E  ++L  D+  +YV LS++YA AGMW+ A ++RK+M +R
Sbjct: 821 GALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQR 880

Query: 540 KIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            + KE GRS IE+   +  FV+ +    +SE++
Sbjct: 881 GVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKI 913



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 153/527 (29%), Positives = 260/527 (49%), Gaps = 31/527 (5%)

Query: 27  HILQ---ILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMH--N 81
           HI+Q   +L Q T N LI        +            ++A +++N++      +H  N
Sbjct: 166 HIIQHCTVLDQYTVNALINMYIQCGSI------------EEARQVWNKLNHTERTVHSWN 213

Query: 82  TMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKM 141
            M+ GY Q    ++AL     M++ GL +   T   +L +C     L  G EIH E +K 
Sbjct: 214 AMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKA 273

Query: 142 GFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVF 201
             L DV V N ++ MY+KCG +  AR VF+  E K +VSW +++ G+ +CG    A E+F
Sbjct: 274 RLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIF 333

Query: 202 DEMPQK----DAISWSIMIDGYRK----KKGDISSARILFEHMPIKDLISWNSMIDGYAK 253
            +M Q+    + I++  +++ +      K G    + IL       DL    +++  YAK
Sbjct: 334 QKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHE-SDLAVGTALVKMYAK 392

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313
            G     +Q+F ++  R++ +W+ MI G A+ GN +EA  ++ +M  +G+ P+ I+ +  
Sbjct: 393 CGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVIL 452

Query: 314 ISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNV 373
           ++AC    AL  G+ IH  + +     D+ VQ ALI MY +CGS+ +AR +F  M +K++
Sbjct: 453 LNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDI 512

Query: 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433
           IS+  MI GL  +G G EAL  F  M+  G+  + + +  +L ACS       G RI Q 
Sbjct: 513 ISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQ 572

Query: 434 MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT 493
           +    G+       + LV++ S  G ++ A  + + M  + ++  +  ++     H    
Sbjct: 573 VIE-AGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQR-DIVAYNAMIGGYAAHNLGK 630

Query: 494 LAEVVVEGLVE--LKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
            A  + + L E  LK D    Y+ + N  A++G  E A  I  ++ K
Sbjct: 631 EALKLFDRLQEEGLKPDKV-TYINMLNACANSGSLEWAKEIHSLVLK 676



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 135/524 (25%), Positives = 258/524 (49%), Gaps = 56/524 (10%)

Query: 67  RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
           R FN   + N  +H+   +     +   +A+     ++++G  V++  Y  +LK C  + 
Sbjct: 97  RYFNGRSKANK-LHSHTYKDERTITGKDRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVK 155

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE--GSEIKDLVSWNLV 184
            LV G E+H  +++   + D + VN LI MY +CG +  AR V+       + + SWN +
Sbjct: 156 DLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAM 215

Query: 185 LRGFVECGEMGKAREVFDEMPQKD-----AISWSIM--------IDGYRKKKGDISSARI 231
           + G+V+ G + +A ++  EM Q       A +  ++        ++  R+   +   AR+
Sbjct: 216 VVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARL 275

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           LF      D+   N +++ YAK G +  A+++F++M  ++V SW+I+I GYA  G+ + A
Sbjct: 276 LF------DVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIA 329

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
             +F++M  +GV P+ I+ +  ++A +   AL  GK +H  +  +    D+ V TAL+ M
Sbjct: 330 FEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKM 389

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y KCGS  + R++F  +  +++I++N MI GL   G  EEA + + QM+ EG+  + + +
Sbjct: 390 YAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITY 449

Query: 412 LGVLIACS-----------HSGLATEGY-------RIFQSMKRHCG------------IE 441
           + +L AC            HS +  +G+           SM   CG            + 
Sbjct: 450 VILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVR 509

Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMP---MKPNLALWGTLLLACRNHQNVTLAEVV 498
             +  ++ ++  L+++G   +AL + + M    +KPN   + ++L AC +   +     +
Sbjct: 510 KDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRI 569

Query: 499 VEGLVELK-ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
            + ++E   A D  +   L N+Y+  G  + A ++   M +R I
Sbjct: 570 HQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDI 613



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 131/295 (44%), Gaps = 20/295 (6%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  A ++F+++ Q +   +N MI GY   +  ++AL  +  ++ +GL  D  TY  +L 
Sbjct: 597 SVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLN 656

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC     L    EIH  V+K G+L D  + N L+  Y+KCG    A  VF+    ++++S
Sbjct: 657 ACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVIS 716

Query: 181 WNLVLRGFVECGEMGKAREV---FDEMP----QKDAISWSIMIDGYRKKKGDISSARILF 233
           WN ++ G   C + G+ ++V   F+ M     + D +++  ++       G +   R  F
Sbjct: 717 WNAIIGG---CAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSAC-SHAGLLEEGRRYF 772

Query: 234 EHMP-----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
             M         +  +  M+D   + G L   + L   MP + N   W  ++     HGN
Sbjct: 773 CSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGN 832

Query: 288 PKEALYLFREMLCQGVRPDVISVMGAISAC-AQVGALDLGKWIHVFMKRSRITMD 341
              A       L   + PD  +V  A+S   A  G  D    +   M++  +T +
Sbjct: 833 VPVAERAAESSL--KLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKE 885


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 188/513 (36%), Positives = 307/513 (59%), Gaps = 13/513 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A  +F+++ + N    N ++  Y Q+S  ++A   + + +   L+  N         
Sbjct: 173 VDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWN--------- 223

Query: 122 CGVLMGLVEGTEI--HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           C +L G V+  +I    +      + DV   N +I  Y++ G +  AR +F+ S ++D+ 
Sbjct: 224 C-LLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVF 282

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239
           +W  ++ G+++   + +ARE+FD+MP+++ +SW+ M+ GY + +  +  A+ LF+ MP +
Sbjct: 283 TWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGE-RMEMAKELFDVMPCR 341

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           ++ +WN+MI GYA+ G +  A+ LF++MP+R+  SW+ MI GY+Q G+  EAL LF +M 
Sbjct: 342 NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQME 401

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
            +G R +  S   A+S CA V AL+LGK +H  + +        V  AL+ MY KCGS++
Sbjct: 402 REGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIE 461

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           EA  +F  M  K+++S+N MIAG   +GFGE AL+ F  M+ EG+  DD   + VL ACS
Sbjct: 462 EANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACS 521

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           H+GL  +G + F +M +  G+ P  +HY+C+VDLL RAG LE A N++++MP +P+ A+W
Sbjct: 522 HTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIW 581

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
           GTLL A R H N  LAE   + +  ++ ++ G+YVLLSN+YA +G W    ++R  MR +
Sbjct: 582 GTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDK 641

Query: 540 KIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            +KK  G S IEI      F  G+ F  + +E+
Sbjct: 642 GVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEI 674



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 137/518 (26%), Positives = 248/518 (47%), Gaps = 37/518 (7%)

Query: 5   AAAKF-SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMD 63
            AA F SLK    + +Q S+T     + L +   +D+      +S  +       T   +
Sbjct: 33  GAANFHSLKRATQTQIQKSQT-----KPLLKCGDSDIKEWNVAISSYM------RTGRCN 81

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           +A R+F ++ + ++  +N MI GY ++   + A   +  M  + L+  N           
Sbjct: 82  EALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNV---------- 131

Query: 124 VLMGLVEGTEIHG--EVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           ++ G V    +    E+ ++    DV   N ++  Y++ G +  ARSVF+    K+ VSW
Sbjct: 132 MIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSW 191

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
           N +L  +V+  +M +A  +F        +SW+ ++ G+ KKK  I  AR  F+ M ++D+
Sbjct: 192 NALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKK-KIVEARQFFDSMNVRDV 250

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
           +SWN++I GYA+ G +  A+QLF+E P ++VF+W+ M+ GY Q+   +EA  LF +M   
Sbjct: 251 VSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKM--- 307

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
               + +S    ++   Q   +++ K +   M    ++        +I  Y +CG + EA
Sbjct: 308 -PERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVS----TWNTMITGYAQCGKISEA 362

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
           + +F  M K++ +S+  MIAG   +G   EAL+ F QME EG   +   F   L  C+  
Sbjct: 363 KNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADV 422

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
                G ++   + +  G E      + L+ +  + G +E+A ++ + M  K ++  W T
Sbjct: 423 VALELGKQLHGRLVKG-GYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGK-DIVSWNT 480

Query: 482 LLLACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLS 517
           ++     H    +A    E +    LK DD  +  +LS
Sbjct: 481 MIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLS 518



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++++A  LF ++   +    NTMI GY++    + AL F+ +MKR+GL  D+ T   VL 
Sbjct: 459 SIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLS 518

Query: 121 ACGVLMGLVE 130
           AC    GLV+
Sbjct: 519 ACS-HTGLVD 527


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  353 bits (907), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 202/528 (38%), Positives = 301/528 (57%), Gaps = 18/528 (3%)

Query: 62   MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
            ++ A  LF+++ +P+    N+MI G   +      L  ++ M   G+ VD  T   VL A
Sbjct: 521  VESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVA 580

Query: 122  CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
               +  L  G  +HG  VK  F  +V   N L+ MYSKCG++  A  VF       +VSW
Sbjct: 581  WANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSW 640

Query: 182  NLVLRGFVECGEMGKAREVFDEMPQK---------DAISWSIMIDGYRKKKGDISSARI- 231
               +  +V  G    A  +FDEM  K          +I  +        K  D+ S  I 
Sbjct: 641  TSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIK 700

Query: 232  --LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
              +  ++P+      N++I+ YAK G +  A+ +F+++P +++ SW+ MI GY+Q+  P 
Sbjct: 701  NGMGSNLPVT-----NALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPN 755

Query: 290  EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
            EAL LF +M  Q  +PD I++   + ACA + ALD G+ IH  + R     D+ V  AL+
Sbjct: 756  EALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALV 814

Query: 350  DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
            DMY KCG L  A+ +F  + KK++IS+ VMIAG GM+GFG EA+  F +M   GI  D+ 
Sbjct: 815  DMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDES 874

Query: 410  IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
             F  +L ACSHSGL  EG++ F SM+  CG+EPKLEHY+C+VDLL+R G L +A   +ES
Sbjct: 875  SFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIES 934

Query: 470  MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
            MP+KP+  +WG LL  CR H +V LAE V E + EL+ D+   YV+L+N+YA+A  WE  
Sbjct: 935  MPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEV 994

Query: 530  LRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
             ++RK M+KR  K+  G S IE+ G    FV+G     Q++ ++++++
Sbjct: 995  KKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLR 1042



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 143/494 (28%), Positives = 255/494 (51%), Gaps = 23/494 (4%)

Query: 58  NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF 117
           N  ++ Q  ++F++I     ++ N ++  Y +  N ++++S +  M++ G++ + YT+  
Sbjct: 416 NCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTC 475

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           VLK    L  + E   +HG V+K+GF  +  VVN LI  Y K G +  A ++F+     D
Sbjct: 476 VLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPD 535

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARILF 233
           +VSWN ++ G V  G  G   E+F +M     + D  +   ++  +    G++S  R L 
Sbjct: 536 VVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAW-ANIGNLSLGRALH 594

Query: 234 ----EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
               +    ++++  N+++D Y+K G+L  A ++F +M +  + SW+  I  Y + G   
Sbjct: 595 GFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYS 654

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           +A+ LF EM  +GVRPD+ +V   + ACA   +LD G+ +H ++ ++ +  ++ V  ALI
Sbjct: 655 DAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALI 714

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           +MY KCGS++EAR +F  +  K+++S+N MI G   N    EAL+ F  M+ +  P DD+
Sbjct: 715 NMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQFKP-DDI 773

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
               VL AC+      +G  I   + R  G    L     LVD+ ++ G L  A  + + 
Sbjct: 774 TMACVLPACAGLAALDKGREIHGHILRR-GYFSDLHVACALVDMYAKCGLLVLAQLLFDM 832

Query: 470 MPMKPNLALWGTLLLACR------NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA 523
           +P K +L  W T+++A        N    T  E+ + G   ++ D+    V+L N  + +
Sbjct: 833 IP-KKDLISW-TVMIAGYGMHGFGNEAISTFNEMRIAG---IEPDESSFSVIL-NACSHS 886

Query: 524 GMWEHALRIRKMMR 537
           G+     +    MR
Sbjct: 887 GLLNEGWKFFNSMR 900



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/434 (23%), Positives = 201/434 (46%), Gaps = 35/434 (8%)

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           F       T   N  I  + +  + + A+      K   L +++Y    VL+ C     L
Sbjct: 328 FTNTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCS--VLQLCAEKKSL 385

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
            +G  +H  ++  G   D  +   L+ MY  CG +   R +F+      +  WNL++  +
Sbjct: 386 EDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEY 445

Query: 189 VECGEMGKAREVFDEMPQ----KDAISWSIM---------------IDGYRKKKGDISSA 229
            + G   ++  +F +M +     +  +++ +               + GY  K G  S+ 
Sbjct: 446 AKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNT 505

Query: 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
            ++            NS+I  Y K G + +A  LF+E+ E +V SW+ MI+G   +G   
Sbjct: 506 AVV------------NSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSG 553

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
             L +F +ML  GV  D+ +++  + A A +G L LG+ +H F  ++  + +++    L+
Sbjct: 554 NGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLL 613

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           DMY KCG+L+ A  +F  M    ++S+   IA     G   +A+  F +M+++G+  D  
Sbjct: 614 DMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIY 673

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
               ++ AC+ S    +G  +   + ++ G+   L   + L+++ ++ G +E+A  +   
Sbjct: 674 TVTSIVHACACSSSLDKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLVFSK 732

Query: 470 MPMKPNLALWGTLL 483
           +P+K ++  W T++
Sbjct: 733 IPVK-DIVSWNTMI 745



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 83/178 (46%), Gaps = 2/178 (1%)

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           S    +  CA+  +L+ GK +H  +  + I++D  +   L+ MY+ CG L + R+IF  +
Sbjct: 371 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKI 430

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
               V  +N++++     G   E++  F +M+  G+  +   F  VL   +  G   E  
Sbjct: 431 MNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECK 490

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           R+   + +  G        + L+    + G +E A N+ + +  +P++  W +++  C
Sbjct: 491 RVHGYVLK-LGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELS-EPDVVSWNSMINGC 546


>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
 gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
          Length = 537

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 192/572 (33%), Positives = 322/572 (56%), Gaps = 72/572 (12%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLIT---EPFTLSQLLMSLTS-----PNTLNMDQAE 66
           ++ L++  KT + + Q+ A   TN  ++    P  L++ L +LT+      +T  +  A+
Sbjct: 19  IIKLIKQCKTISQLHQLHAYTITNTPLSFHSSPSLLTKFLYTLTTKAKSKSSTSLLHYAK 78

Query: 67  RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
            +FN I  P+T+ +NT+IR +T  S P  AL F+  M+R  + +D++++PF LKAC  L 
Sbjct: 79  SIFNSIQNPSTFCYNTIIRVHTLLSFPIPALHFFTQMRRLSVPLDSHSFPFTLKACAQLG 138

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
           G+     +H +V+K GFL D++V+N LI                                
Sbjct: 139 GVFSARCLHCQVLKFGFLSDLYVMNSLI-------------------------------H 167

Query: 187 GFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNS 246
           G++       A +VFDE PQ+D                                ++S+N 
Sbjct: 168 GYMVSDMSNDAYKVFDESPQRD--------------------------------VVSYNV 195

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           +IDG+ K GD+V A++LF+ MP R+  SW+ +I G A+    +EA+ LF  M+   +RPD
Sbjct: 196 LIDGFVKAGDVVKARELFDLMPVRDSVSWNTIIAGCAKGDYCEEAIELFDFMMDLEIRPD 255

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
            ++++  +SACAQ+G L+ GK IH +++R+ + +D  + T L+D Y KCG +D A +IF 
Sbjct: 256 NVALVSTLSACAQLGELEKGKKIHDYIERNAMKVDTFLSTGLVDFYAKCGCVDIALKIFD 315

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
           S + KN+ ++N M+ GL M+G+GE  L+ F++M   G+  D +  LGVL+ CSHSGL  E
Sbjct: 316 SSSDKNLFTWNAMLVGLAMHGYGELLLEYFSRMIEAGVKPDGISILGVLVGCSHSGLVDE 375

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
             ++F  M+   G+  + +HY C+ DLL RAG +++ + +++ MP   ++++W  LL  C
Sbjct: 376 ARKLFDEMESVYGVPREPKHYGCMADLLGRAGLIKKVMEMIKDMPRGGDMSVWSGLLGGC 435

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK-MMRKRKIKKET 545
           R H +V +AE   + L+ELK DD G+Y +L+N+YA+A  WE  + IR+ +   R + K  
Sbjct: 436 RIHGDVEIAEKAAKHLMELKPDDGGVYSILANVYANAERWEDVMNIRRSLSSNRVVTKIA 495

Query: 546 GRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           G S+I++DG   EF++G+    +S+++ LV+ 
Sbjct: 496 GFSLIQLDGVAHEFIAGDSLHSESDKIYLVLN 527


>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
 gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 207/570 (36%), Positives = 318/570 (55%), Gaps = 43/570 (7%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           + +P++  ++   +   + QI A +T   LI+  F +S++L      ++ +++ A  LF+
Sbjct: 49  ITHPILLAMESCTSMLQLKQIQAHMTKTALISHTFPVSRVLAFCALSDSGDINHAHLLFS 108

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
           Q+  PNTY+ NTMIRGY+++   Q    F+  M +KG+ +D  ++ F LKAC   +G++E
Sbjct: 109 QLQNPNTYIWNTMIRGYSKAKMGQTGFLFFCQMVQKGVEMDCRSFVFALKACEQFLGVLE 168

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G  +H  V KMGF+  + V NGL+  Y   G  GC                         
Sbjct: 169 GKSVHCVVWKMGFVYTLLVQNGLVHFY---GLRGC------------------------- 200

Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWN----- 245
              +G AR VFDE+ ++D +SW+ MIDGY K K     A  LF+ M +  ++  N     
Sbjct: 201 ---LGLARLVFDEISERDVVSWTSMIDGYSKHKW-CDEALKLFDSMLMYGVVEPNEVTMI 256

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVF-SWSIM---IDGYAQHGNPKEALYLFREMLCQ 301
           +++   ++ GDL+  +     +  RNV  S ++M   +D Y + G    A  +F  M   
Sbjct: 257 AVLSSCSQKGDLILGKTFLEYVKTRNVTRSLNLMNAILDMYVKCGCLDSAREIFDTM-GA 315

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRIT-MDMIVQTALIDMYMKCGSLDE 360
              P   ++   +  C Q+G LD+G+WIH    R R   + +I+  ALIDMY KCG + E
Sbjct: 316 AFAPMENTLACVLPVCGQLGCLDVGQWIHRNYVRMRYNEISVILANALIDMYAKCGVIHE 375

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           A ++F  M ++N++S+N MI     +G  ++AL  F +M + G   DD+  +GVL ACSH
Sbjct: 376 AAKVFNDMPERNLVSWNSMITAYASHGHAKQALSVFERMISGGFKPDDITLVGVLSACSH 435

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
            GL  EG   FQ+MKR  GIEPK EHY+C++DLL R G LE A  ++  MPM+P+ A WG
Sbjct: 436 GGLVAEGQEYFQNMKRKYGIEPKNEHYACMIDLLGRVGLLEDAYELITKMPMEPSAAAWG 495

Query: 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540
            L+ ACR H NV +A++    L+EL  +D G+YVLL+NI A    W      R+MMR+R+
Sbjct: 496 ALVHACRMHGNVEVAKIAAPRLLELDPEDSGIYVLLANICASGRRWGDVKMARRMMRERR 555

Query: 541 IKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570
           +KK  GRS++E++G   EF++G+    QSE
Sbjct: 556 VKKIPGRSIVEVEGQFHEFLAGDESHPQSE 585


>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 187/515 (36%), Positives = 294/515 (57%), Gaps = 10/515 (1%)

Query: 74  QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
           +PN    + +I G+ Q+   ++AL     M+  G   +  T   VL AC  L  L  G E
Sbjct: 8   KPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGKE 67

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           IHG V + GF+ + FVVNGL+ +Y +C  MG A  +F G  +K++VS+N ++ G+ E G 
Sbjct: 68  IHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGN 127

Query: 194 MGKAREVFDEMP--QKDAISWSIMIDGYRK---KKGDISSARILFEHMPIKDLISWNSMI 248
           + KA+E+FD+M    KD ISW+ MI GY     K  D+ +A++ F+ +  +D  +WN +I
Sbjct: 128 VEKAKELFDQMELVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTATWNVLI 187

Query: 249 DGYAKIGDLVAAQQLFNEMP----ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
            GYA    L   Q L  +M     E NV++W+ +I G+ ++G+ + AL LF EM    +R
Sbjct: 188 SGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLR 247

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           PD+ +V   + ACA++  +  GK +H    R    +D+ +  AL+DMY KCGS+  A ++
Sbjct: 248 PDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQV 307

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           +  ++  N++S N M+    M+G G+E +  F  M   G   D + FL VL +C H+G  
Sbjct: 308 YNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAV 367

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
             G+  F  M  +  + P L+HY+C+VDLLSRAG L++A  +V+ +P KP+  +WG LL 
Sbjct: 368 ETGHEFFDLMTYY-NVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLG 426

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
            C    NV L E+  E L+EL+ ++ G YVLL+N+YA AG W    R R+M++ R + K 
Sbjct: 427 GCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKS 486

Query: 545 TGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSF 579
            G S IE   +I  F+S +    ++E++   + + 
Sbjct: 487 PGCSWIEDREDIHVFLSCDKSHEKTEDIYTTLDNL 521



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 139/295 (47%), Gaps = 14/295 (4%)

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
           +E  + N+ SWS +I G+AQ+G  KEAL L   M   G  P+  ++   + ACA++  L+
Sbjct: 4   SENSKPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLN 63

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
           LGK IH ++ R     +  V   L+D+Y +C  +  A +IF   + KNV+SYN MI G  
Sbjct: 64  LGKEIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYC 123

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444
            NG  E+A + F QME  G  KD + +  ++   + + L  E  +  Q +      E   
Sbjct: 124 ENGNVEKAKELFDQMELVG--KDTISWNSMISGYADNLLKCEDLKAAQ-LAFDGVTERDT 180

Query: 445 EHYSCLVDLLSRAGELEQALNIVESMP---MKPNLALWGTLLLACRNHQNVTLAEVVVEG 501
             ++ L+   +   +LE   N+++ M     +PN+  W  ++     H      E+ +  
Sbjct: 181 ATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGII---SGHVENGHNELALRL 237

Query: 502 LVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNI 556
             E++        L  +IY    +     R+  + R +++   + R   E+D +I
Sbjct: 238 FTEMQTSS-----LRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHI 287



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 177/393 (45%), Gaps = 33/393 (8%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           +I   +T +  ++ PF ++ L+         +M  A ++F+     N   +NTMI GY +
Sbjct: 67  EIHGYVTRHGFMSNPFVVNGLVDVYRR--CADMGSALKIFSGFSVKNVVSYNTMIVGYCE 124

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC--DV 147
           + N +KA   +  M+    LV   T  +     G    L++  ++    +    +   D 
Sbjct: 125 NGNVEKAKELFDQME----LVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDT 180

Query: 148 FVVNGLIGMYSKCGHMGCARSVF-----EGSEIKDLVSWNLVLRGFVECGEMGKAREVFD 202
              N LI  Y+ C  +   +++      +G E  ++ +WN ++ G VE G    A  +F 
Sbjct: 181 ATWNVLISGYACCNQLENIQNLIQKMKGDGFE-PNVYTWNGIISGHVENGHNELALRLFT 239

Query: 203 EMP----QKDAISWSIMIDG-------YRKKKGDISSARILFEHMPIKDLISWNSMIDGY 251
           EM     + D  +  I++          R K+    S R  +E     D+    +++D Y
Sbjct: 240 EMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYE----LDVHIGAALVDMY 295

Query: 252 AKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
           AK G +  A Q++N +   N+ S + M+  YA HG+  E + LFR ML  G RPD ++ +
Sbjct: 296 AKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFL 355

Query: 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
             +S+C   GA++ G      M    +T  +   T ++D+  + G LDEA  +   + +K
Sbjct: 356 SVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRK 415

Query: 372 -NVISYNVMIAGLGMNG---FGEEALKCFAQME 400
            + + +  ++ G  + G    GE A +   ++E
Sbjct: 416 PDSVMWGALLGGCVIWGNVELGEIAAESLIELE 448


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 192/556 (34%), Positives = 309/556 (55%), Gaps = 42/556 (7%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D   +LF+ + + N     ++I GY+     ++A+S +  M   G+  +  T   V+ A
Sbjct: 181 VDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISA 240

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G ++   + ++G      +VN L+ MY KCG +  AR +F+    K+LV +
Sbjct: 241 CAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMY 300

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK---------------------------------- 207
           N ++  +V          + DEM QK                                  
Sbjct: 301 NTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLR 360

Query: 208 ------DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQ 261
                 D IS +I ID Y K  G   +A  +FEHMP K +++WNS+I G  + GD+  A 
Sbjct: 361 NGLEGWDNISNAI-IDMYMKC-GKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAW 418

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
           ++F+EM ER++ SW+ MI    Q    +EA+ LFREM  QG+  D ++++G  SAC  +G
Sbjct: 419 RIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLG 478

Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
           ALDL KW+  +++++ I +D+ + TAL+DM+ +CG    A  +F  M K++V ++   I 
Sbjct: 479 ALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIG 538

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
            + M G  E A++ F +M  + +  DD++F+ +L ACSH G   +G ++F SM++  GI 
Sbjct: 539 VMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIR 598

Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEG 501
           P + HY C+VDLL RAG LE+A+++++SMP++PN  +WG+LL ACR H+NV LA    E 
Sbjct: 599 PHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEK 658

Query: 502 LVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
           L +L  +  G++VLLSNIYA AG W    R+R  M+++ ++K  G S IE+ G I EF S
Sbjct: 659 LTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTS 718

Query: 562 GEIFDVQSEELELVIQ 577
           G+    ++  + L+++
Sbjct: 719 GDESHAENTHIGLMLE 734



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 159/568 (27%), Positives = 280/568 (49%), Gaps = 63/568 (11%)

Query: 3   TLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLIT-EPFT-LSQLLMSLTSPNTL 60
           +L  A    +N    LL   KT   + Q+   +    L+  +P + L++L+ S     TL
Sbjct: 16  SLKEANPITRNSSSKLLVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTL 75

Query: 61  -NMDQAERLF--NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF 117
            ++D A   F  +     + +M+N +IRGY  +    +A+  YV M   G++ D YT+PF
Sbjct: 76  ESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPF 135

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           +L AC  ++ L EG ++HG V+KMG   D+FV N LI  Y++CG +   R +F+G   ++
Sbjct: 136 LLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERN 195

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILF 233
           +VSW  ++ G+       +A  +F +M     + + ++   +I    K K D+   + + 
Sbjct: 196 VVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLK-DLELGKKVC 254

Query: 234 EHMPIKDL----ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
            ++    +    I  N+++D Y K GD+ AA+Q+F+E   +N+  ++ ++  Y  H    
Sbjct: 255 SYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWAS 314

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           + L +  EML +G RPD ++++  I+ACAQ+G L +GK  H ++ R+ +     +  A+I
Sbjct: 315 DVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAII 374

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG---------------------- 387
           DMYMKCG  + A ++F  M  K V+++N +IAGL  +G                      
Sbjct: 375 DMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNT 434

Query: 388 ---------FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC 438
                      EEA++ F +M+ +GIP D +  +G+  AC + G       +   ++++ 
Sbjct: 435 MIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKN- 493

Query: 439 GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVV 498
            I   L+  + LVD+ SR G+   A+++ + M  K +++ W   +        V   E  
Sbjct: 494 DIHVDLQLGTALVDMFSRCGDPSSAMHVFKRME-KRDVSAWTAAI-------GVMAMEGN 545

Query: 499 VEGLVEL---------KADDCGLYVLLS 517
            EG +EL         K DD     LL+
Sbjct: 546 TEGAIELFNEMLEQKVKPDDVVFVALLT 573



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 112/433 (25%), Positives = 209/433 (48%), Gaps = 29/433 (6%)

Query: 128 LVEGTEIHGEVVKMGFLCD--VFVVNGLIGMYSKCG---HMGCARSVF--EGSEIKDLVS 180
           L E  ++H +++K G LC      +N LI    + G    +  AR+ F  +   +  L  
Sbjct: 38  LKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFGDDDGNMASLFM 97

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK- 239
           +N ++RG+   G   +A  ++ +M     +   I+ D Y       + ++IL     ++ 
Sbjct: 98  YNCLIRGYASAGLGDQAILLYVQM-----LVMGIVPDKYTFPFLLSACSKILALSEGVQV 152

Query: 240 -----------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNP 288
                      D+   NS+I  YA+ G +   ++LF+ M ERNV SW+ +I+GY+     
Sbjct: 153 HGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLS 212

Query: 289 KEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTAL 348
           KEA+ LF +M   GV P+ ++++  ISACA++  L+LGK +  ++    + +  I+  AL
Sbjct: 213 KEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNAL 272

Query: 349 IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD 408
           +DMYMKCG +  AR+IF     KN++ YN +++    + +  + L    +M  +G   D 
Sbjct: 273 VDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDK 332

Query: 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468
           +  L  + AC+  G  + G      + R+ G+E      + ++D+  + G+ E A  + E
Sbjct: 333 VTMLSTIAACAQLGDLSVGKSSHAYVLRN-GLEGWDNISNAIIDMYMKCGKREAACKVFE 391

Query: 469 SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528
            MP K  +  W +L+       ++ LA  + + ++E    D   +  +        M+E 
Sbjct: 392 HMPNK-TVVTWNSLIAGLVRDGDMELAWRIFDEMLE---RDLVSWNTMIGALVQVSMFEE 447

Query: 529 ALRIRKMMRKRKI 541
           A+ + + M+ + I
Sbjct: 448 AIELFREMQNQGI 460



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 126/293 (43%), Gaps = 25/293 (8%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +M+ A R+F+++ + +    NTMI    Q S  ++A+  +  M+ +G+  D  T   +  
Sbjct: 413 DMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIAS 472

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           ACG L  L     +   + K     D+ +   L+ M+S+CG    A  VF+  E +D+ +
Sbjct: 473 ACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSA 532

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILF--- 233
           W   +      G    A E+F+EM ++    D + +  ++       G +   R LF   
Sbjct: 533 WTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTAC-SHGGSVDQGRQLFWSM 591

Query: 234 --EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKE 290
              H     ++ +  M+D   + G L  A  L   MP E N   W  ++    +H N + 
Sbjct: 592 EKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVEL 651

Query: 291 ALYLFREMLCQGVRPDVISV---MGAISACAQVGALDLGKWIHVFMKRSRITM 340
           A Y   E L Q + P+ + +   +  I A A       GKW  V   R R+ M
Sbjct: 652 AHYA-AEKLTQ-LAPERVGIHVLLSNIYASA-------GKWTDV--ARVRLQM 693


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 194/558 (34%), Positives = 313/558 (56%), Gaps = 9/558 (1%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           +I  QL TN      F ++ ++          +D A ++F+++ + +    NT+I G++Q
Sbjct: 168 EIHGQLITNSFAANVFAMTGVVNMYA--KCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQ 225

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
           +   +KAL   + M+ +G   D+ T   VL A   +  L+ G  IHG  ++ GF   V +
Sbjct: 226 NGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNI 285

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK-- 207
              L  MYSKCG +  AR +F+G + K +VSWN ++ G+V+ GE  KA  VF++M ++  
Sbjct: 286 STALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGI 345

Query: 208 DAISWSIMIDGYR-KKKGDISSARILFEHMPI----KDLISWNSMIDGYAKIGDLVAAQQ 262
           D    +IM   +     GD+   + + + +       D+   NS+I  Y+K   +  A  
Sbjct: 346 DPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASD 405

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +FN +  R   SW+ MI GYAQ+G   EAL  F EM   G++PD  +++  I A A++  
Sbjct: 406 IFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSV 465

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
               KWIH  + RS +  ++ V TAL+DMY KCG++  AR++F  ++ ++VI++N MI G
Sbjct: 466 TRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDG 525

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
            G +G G  AL  F +M+   +  +D+ +L V+ ACSHSGL  EG R F+SMK+  G+EP
Sbjct: 526 YGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEP 585

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
            ++HY  +VDLL RAG +++A + +E+MP+ P + ++G    AC+ H+N+ + E   + L
Sbjct: 586 SMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKL 645

Query: 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
            EL  D+ G +VLL+NIYA    W     +RK M K+ +KK  G SV+E+   +  F SG
Sbjct: 646 FELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSG 705

Query: 563 EIFDVQSEELELVIQSFV 580
                QS+ +   ++  V
Sbjct: 706 STTHPQSKRIYAFLEELV 723



 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 151/569 (26%), Positives = 273/569 (47%), Gaps = 80/569 (14%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           K+P   LL++  +   + QI+  +  N L  E    ++L+   +   ++N  +A R+F  
Sbjct: 49  KHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSIN--EAARVFEP 106

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           I      +++TM++GY ++S+ + AL+F   M+   +    Y + ++LK CG    L  G
Sbjct: 107 IDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRG 166

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            EIHG+++   F  +VF + G++ MY+KC  +  A  +F+    +DLVSWN ++ GF + 
Sbjct: 167 KEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQN 226

Query: 192 GEMGKAREVF----DEMPQKDAISWSIM---------------IDGYR------------ 220
           G   KA E+     DE  + D+I+   +               I GY             
Sbjct: 227 GFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNIS 286

Query: 221 -------KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
                   K G + +AR++F+ M  K ++SWNSM+DGY                      
Sbjct: 287 TALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGY---------------------- 324

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
                     Q+G P++A+ +F +ML +G+ P  +++M A+ ACA +G L+ GK++H F+
Sbjct: 325 ---------VQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFV 375

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
            +  +  D+ V  +LI MY KC  +D A  IF ++  +  +S+N MI G   NG   EAL
Sbjct: 376 DQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEAL 435

Query: 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
            CF++M++ G+  D    + V+ A +   +      I   + R C ++  +   + LVD+
Sbjct: 436 NCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSC-LDKNIFVTTALVDM 494

Query: 454 LSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH----QNVTLAEVVVEGLVELKADD 509
            S+ G +  A  + + M    ++  W  ++     H      + L + + +G VE   +D
Sbjct: 495 YSKCGAIHMARKLFD-MISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVE--PND 551

Query: 510 CGLYVLLSNIYADAGMWEHALRIRKMMRK 538
              Y+ + +  + +G+ +  LR  K M++
Sbjct: 552 I-TYLSVISACSHSGLVDEGLRHFKSMKQ 579


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 169/425 (39%), Positives = 272/425 (64%), Gaps = 14/425 (3%)

Query: 151 NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAI 210
           NGL+  Y + G +  AR VF+    +++VSW  ++RG+V+ G + +A  +F  MP+++ +
Sbjct: 29  NGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNVV 88

Query: 211 SWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER 270
           SW++M+ G   + G +  AR LF+ MP+KD+++  +MIDG    G L+ A+++F+EMP+R
Sbjct: 89  SWTVMLGGL-IEDGRVDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQR 147

Query: 271 NVFSWSIMIDG-------------YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISAC 317
           NV +W+ MI G             Y + G   EAL LF  M  +GVRP   SV+  +S C
Sbjct: 148 NVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVC 207

Query: 318 AQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYN 377
             + +LD G+ +H  + RS+  +D+ V + LI MY+KCG L  A+R+F   + K+++ +N
Sbjct: 208 GSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWN 267

Query: 378 VMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRH 437
            +IAG   +GFGE+AL+ F  M +  I  D++ F+GVL ACS++G   EG  IF+SMK  
Sbjct: 268 SIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSK 327

Query: 438 CGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEV 497
             ++PK EHY+C+VDLL RAG+L +A+N++E+MP++ +  +WG LL ACR H+N+ LAE+
Sbjct: 328 YQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEI 387

Query: 498 VVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIK 557
             + L++L+ ++ G Y+LLSN+Y+    W+  + +RK MR + ++K  G S IE+D  + 
Sbjct: 388 AAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWIEVDKKVH 447

Query: 558 EFVSG 562
            F  G
Sbjct: 448 IFSGG 452



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 128/274 (46%), Gaps = 23/274 (8%)

Query: 229 ARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNP 288
           AR LF+ MP  + ISWN ++ GY + G +  A+++F++MPERNV SW+ MI GY Q G  
Sbjct: 13  ARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLI 72

Query: 289 KEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTAL 348
           +EA  LF  M       +V+S    +    + G +D  + +   M       D++  T +
Sbjct: 73  EEAELLFWRM----PERNVVSWTVMLGGLIEDGRVDEARQLFDMMP----VKDVVASTNM 124

Query: 349 IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG-------------LGMNGFGEEALKC 395
           ID     G L EAR IF  M ++NV+++  MI+G                 GF  EAL  
Sbjct: 125 IDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALAL 184

Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           F+ M+ EG+       + VL  C        G ++   + R    +  +   S L+ +  
Sbjct: 185 FSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVR-SQFDIDIYVSSVLITMYI 243

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
           + G+L  A  + +    K ++ +W +++     H
Sbjct: 244 KCGDLVTAKRVFDRFSSK-DIVMWNSIIAGYAQH 276



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 107/246 (43%), Gaps = 22/246 (8%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRG-------------YTQSSNPQKALSFYVNMKRKGLLV 110
           +A  +F+++ Q N     +MI G             Y +     +AL+ +  M+R+G+  
Sbjct: 136 EAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRP 195

Query: 111 DNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF 170
              +   VL  CG L  L  G ++H ++V+  F  D++V + LI MY KCG +  A+ VF
Sbjct: 196 SFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVF 255

Query: 171 EGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK---KGDIS 227
           +    KD+V WN ++ G+ + G   KA EVF +M         I   G        G + 
Sbjct: 256 DRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVK 315

Query: 228 SARILFEHMPIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDG 281
               +FE M  K  +      +  M+D   + G L  A  L   MP E +   W  ++  
Sbjct: 316 EGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGA 375

Query: 282 YAQHGN 287
              H N
Sbjct: 376 CRTHKN 381



 Score = 46.2 bits (108), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 22/194 (11%)

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI-AC 418
           EAR++F  M + N IS+N +++G   NG   EA K F +M     P+ +++    +I   
Sbjct: 12  EARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKM-----PERNVVSWTAMIRGY 66

Query: 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
              GL  E   +F  M      E  +  ++ ++  L   G +++A  + + MP+K  +A 
Sbjct: 67  VQEGLIEEAELLFWRMP-----ERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVAS 121

Query: 479 WGTLLLACRNHQNVTLAEVVVE----------GLVELKADDCGLYVLLSNIYADAGMWEH 528
              +   C   + +   E+  E           ++  + DD G +  +  IY   G    
Sbjct: 122 TNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDD-GTWSTMIKIYERKGFELE 180

Query: 529 ALRIRKMMRKRKIK 542
           AL +  +M++  ++
Sbjct: 181 ALALFSLMQREGVR 194


>gi|115441777|ref|NP_001045168.1| Os01g0912900 [Oryza sativa Japonica Group]
 gi|20161377|dbj|BAB90301.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113534699|dbj|BAF07082.1| Os01g0912900 [Oryza sativa Japonica Group]
 gi|125573076|gb|EAZ14591.1| hypothetical protein OsJ_04514 [Oryza sativa Japonica Group]
          Length = 533

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 172/442 (38%), Positives = 271/442 (61%), Gaps = 2/442 (0%)

Query: 111 DNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFL-CDVFVVNGLIGMYSKCGHMGCARSV 169
           D+++ PF L A   L  L  G  +H   +++  L C + V N L+ +Y+KC  +  A + 
Sbjct: 80  DHFSLPFALNAAASLRLLPLGASLHALALRLALLPCRLPVANALVDLYAKCDDLPAAHTA 139

Query: 170 FEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSA 229
                  D VS+N +L        +  A  +F  MP +  +SW+ M+  Y    GD+SSA
Sbjct: 140 LADIAAPDAVSFNSLLCAHARLASVPDAESLFVAMPSRTQVSWNAMVVVY-VNAGDVSSA 198

Query: 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
           R +F+ MP +D  SW+ +I GY K G + +A+++F+ MP +N+ +W+ MI+GYAQ G PK
Sbjct: 199 RRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPK 258

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           E+L LFREM   G+ PD  +++G ISA +Q+G+ +L  W+  ++ + RI  +  V TAL+
Sbjct: 259 ESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTALV 318

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           DM+ KCG++DEA   F  + + +   Y  +I+GL  +G  + AL+ F +M+ + +  D +
Sbjct: 319 DMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPDPI 378

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            F+GVL ACSH+GL  +G   +++M ++ G+E + +HY+C+VD+L RAG LE+A  +V++
Sbjct: 379 TFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFEMVQT 438

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           MPM P+    G LL AC+ H NV +AE+V   L EL+  + G Y++LSNIYA+   WE A
Sbjct: 439 MPMGPHPGALGALLSACKTHGNVEIAEIVANKLFELEPHNTGNYIMLSNIYAEKEQWEEA 498

Query: 530 LRIRKMMRKRKIKKETGRSVIE 551
            RIR +MR R   K+ G S +E
Sbjct: 499 ERIRSVMRTRLPFKQPGSSWVE 520



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 136/335 (40%), Gaps = 38/335 (11%)

Query: 58  NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGL-----LVDN 112
           N  ++  A R+F+Q+   ++   + +I GY +  + + A   +  M  K L     +++ 
Sbjct: 191 NAGDVSSARRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMING 250

Query: 113 YTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG 172
           Y    V K         E   +  E+   G   D   + G+I   S+ G    A  V   
Sbjct: 251 YAQSGVPK---------ESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSY 301

Query: 173 SEIKDLVSWNLVLRGFVE----CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS 228
            + K +   + VL   V+    CG + +A   F E+ Q DA  ++ +I G     G    
Sbjct: 302 VDKKRIERNDKVLTALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGL-AAHGHAKL 360

Query: 229 ARILFEHMPIK----DLISWNSMIDGYAKIG------DLVAAQQLFNEMPERNVFSWSIM 278
           A  +FE M  +    D I++  ++   +  G      D   A   +  M ER    ++ +
Sbjct: 361 ALQVFERMQAQSVWPDPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGM-ERRADHYACV 419

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI--HVFMKRS 336
           +D   + G  +EA  + + M   G  P  +  +  +SAC   G +++ + +   +F    
Sbjct: 420 VDMLGRAGRLEEAFEMVQTM-PMGPHPGALGAL--LSACKTHGNVEIAEIVANKLFELEP 476

Query: 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
             T + I+   L ++Y +    +EA RI   M  +
Sbjct: 477 HNTGNYIM---LSNIYAEKEQWEEAERIRSVMRTR 508


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 207/594 (34%), Positives = 313/594 (52%), Gaps = 73/594 (12%)

Query: 61  NMDQAERLFNQIYQ---PNTYMHNTMIRGYTQSSNPQKALSFYVNM------KRKGLLVD 111
           ++++A  +F++I Q    +    N+++  + +SSN   AL  +  M      K      D
Sbjct: 205 SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 264

Query: 112 NYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE 171
             +   +L ACG L  + +  E+HG  ++ G   DVFV N LI  Y+KCG M  A  VF 
Sbjct: 265 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFN 324

Query: 172 GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDIS 227
             E KD+VSWN ++ G+ + G    A E+F  M ++    D ++W+ +I GY  ++G   
Sbjct: 325 MMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGY-SQRGCSH 383

Query: 228 SARILFEHMPI------------------------------------------------- 238
            A  LF  M                                                   
Sbjct: 384 EALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGED 443

Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMP--ERNVFSWSIMIDGYAQHGNPKEALYLFR 296
           +DL+ +N++ID Y+K     AA+ +F+++P  ERNV +W++MI G+AQ+G+  +AL LF 
Sbjct: 444 EDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFV 503

Query: 297 EMLCQ--GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI--TMDMIVQTALIDMY 352
           EM+ +  GV P+  ++   + ACA + A+ +GK IH ++ R     +    V   LIDMY
Sbjct: 504 EMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMY 563

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCG +D AR +F SM++K+ IS+  M+ G GM+G G EAL  F +M   G   DD+ FL
Sbjct: 564 SKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFL 623

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            VL ACSH G+  +G   F SM    G+ P+ EHY+C +DLL+R+G L++A   V+ MPM
Sbjct: 624 VVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPM 683

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           +P   +W  LL ACR H NV LAE  +  LVE+ A++ G Y L+SNIYA AG W+   RI
Sbjct: 684 EPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARI 743

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586
           R +M+K  IKK  G S ++       F  G+    +S  L   I + +++ I+R
Sbjct: 744 RHLMKKSGIKKRPGCSWVQGQKGTASFFVGD----RSHPLSPQIYALLESLIDR 793



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 158/554 (28%), Positives = 258/554 (46%), Gaps = 87/554 (15%)

Query: 15  LVSLLQISKTTTHILQILAQLTTND---------------LITEPFTLSQLLMSLTSPNT 59
             SLL+  K+   + QI  Q+  +                L +EPF   + L +    + 
Sbjct: 40  FASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVASY 99

Query: 60  LN---MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYP 116
           L     D A  +  ++        N +IR + +      A++    M R G   D++T P
Sbjct: 100 LACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLP 159

Query: 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE---GS 173
            VLKACG L     G+  HG +   GF  +VF+ N L+ MYS+CG +  A  +F+     
Sbjct: 160 HVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQR 219

Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEM----------------------------- 204
            I D++SWN ++   V+      A ++F +M                             
Sbjct: 220 GIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 279

Query: 205 --PQ--------------KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMI 248
             PQ               D    + +ID Y  K G + +A  +F  M  KD++SWN+M+
Sbjct: 280 AVPQTKEVHGNAIRNGTFPDVFVGNALIDAY-AKCGLMENAVKVFNMMEFKDVVSWNAMV 338

Query: 249 DGYAKIGDLVAAQQLFNEMPERN----VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
            GY++ G+  AA +LF  M + N    V +W+ +I GY+Q G   EAL LFR+M+  G  
Sbjct: 339 AGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSL 398

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVF-MKRSRITM---------DMIVQTALIDMYMK 354
           P+ ++++  +SACA +GA   G  IH + +K   +T+         D++V  ALIDMY K
Sbjct: 399 PNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSK 458

Query: 355 CGSLDEARRIF--YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE--GIPKDDLI 410
           C S   AR IF    + ++NV+++ VMI G    G   +ALK F +M +E  G+  +   
Sbjct: 459 CRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYT 518

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS-CLVDLLSRAGELEQALNIVES 469
              +L+AC+H      G +I   + RH   E      + CL+D+ S+ G+++ A ++ +S
Sbjct: 519 ISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDS 578

Query: 470 MPMKPNLALWGTLL 483
           M  K  ++ W +++
Sbjct: 579 MSQKSAIS-WTSMM 591


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 183/553 (33%), Positives = 327/553 (59%), Gaps = 11/553 (1%)

Query: 35  LTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQ 94
           +     I    +L++L+  + S  +L +  A  +F      +    N+M+R +  S+ P+
Sbjct: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPR 60

Query: 95  KALSFYVNM-KRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGL 153
           +AL  Y  M +R   + D +T+P +LK C +L+    G  +HG+VVK     D+++   L
Sbjct: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120

Query: 154 IGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DA 209
           + MY+ CG +  AR +FE    ++ V W  ++ G+++     +A  ++ +M +     D 
Sbjct: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180

Query: 210 ISWSIMIDGYRKKKGDISSARILFEHMPIKDL----ISWNSMIDGYAKIGDLVAAQQLFN 265
           ++ + ++    + K D+     L  H+   D+    +  +++++ YAK GDL  A+Q+F+
Sbjct: 181 VTMATLVSACAELK-DLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFD 239

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREML-CQGVRPDVISVMGAISACAQVGALD 324
           ++ +++V++WS +I GY ++    EAL LFRE+     +RP+ ++++  ISACAQ+G L+
Sbjct: 240 QLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLE 299

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
            G+W+H ++ R++    + +  +LIDM+ KCG +D A+RIF SM+ K++IS+N M+ GL 
Sbjct: 300 TGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLA 359

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444
           ++G G EAL  F  M+T  +  D++ F+GVL ACSH+GL  EG ++F  ++   G+  K 
Sbjct: 360 LHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKS 419

Query: 445 EHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE 504
           EHY C+VDLL RAG L +A   +  MP++P+ A+WG++L ACR + N+ L E     L+E
Sbjct: 420 EHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLE 479

Query: 505 LKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEI 564
           L+  + G+Y+LLSNIYA   MW    ++R++M ++ I+K  G S + ID     F++G+ 
Sbjct: 480 LEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDC 539

Query: 565 FDVQSEELELVIQ 577
              +  E+ ++++
Sbjct: 540 SHPEIAEISIMLR 552


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 192/557 (34%), Positives = 322/557 (57%), Gaps = 9/557 (1%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           +I  QL  N   +  F ++ ++ ++ +   L +++A ++F+++ + +    NT+I GY Q
Sbjct: 196 EIHCQLIVNGFASNVFAMTGVV-NMYAKCRL-VEEAYKMFDRMPERDLVCWNTIISGYAQ 253

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
           +   + AL   + M+ +G   D+ T   +L A   +  L  G  IHG  ++ GF   V V
Sbjct: 254 NGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNV 313

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA 209
              L+ MYSKCG +G AR +F+    K +VSWN ++ G+V+ G+ G A E+F +M  +  
Sbjct: 314 STALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQV 373

Query: 210 ISWSIMIDGYRK---KKGDISSARI---LFEHMPI-KDLISWNSMIDGYAKIGDLVAAQQ 262
              ++ + G        GD+   R    L + + +  D+   NS+I  Y+K   +  A +
Sbjct: 374 EMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAE 433

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F  +  + + SW+ MI GYAQ+G   EA+  F +M  Q ++PD  +++  I A A++  
Sbjct: 434 IFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSV 493

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
           L   KWIH  + R+ +  ++ V TAL+DMY KCG++  AR++F  M +++V ++N MI G
Sbjct: 494 LPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDG 553

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
            G +G G+ AL+ F +M+ E I  +++ FL VL ACSHSGL  EG++ F SMK+  G+EP
Sbjct: 554 YGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEP 613

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
            ++HY  +VDLL RA  L +A + ++ MP++P ++++G +L ACR H+NV L E     +
Sbjct: 614 AMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRI 673

Query: 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
            +L  DD G +VLL+NIYA A MW+   R+R  M K+ I+K  G SV+E+   +  F SG
Sbjct: 674 FDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSG 733

Query: 563 EIFDVQSEELELVIQSF 579
                Q++++   +++ 
Sbjct: 734 TTSHPQAKKIYAFLETL 750



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 133/479 (27%), Positives = 250/479 (52%), Gaps = 11/479 (2%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           K+P   LL++  +   + Q +  +  N L +E    ++L+       +L+  +A R+F  
Sbjct: 77  KHPSAILLELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLH--EAARVFQP 134

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           I      +++TM++GY ++S+   A+SF+  M+  G+    Y + ++LK CG    L +G
Sbjct: 135 IEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKG 194

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            EIH +++  GF  +VF + G++ MY+KC  +  A  +F+    +DLV WN ++ G+ + 
Sbjct: 195 KEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQN 254

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI---LFEHMPIKDLISW---- 244
           G    A E+   M ++     SI I        D+ S RI   +  +       S+    
Sbjct: 255 GFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVS 314

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
            +++D Y+K G +  A+ +F+ M  + V SW+ MIDGY Q+G+P  A+ +F++M+ + V 
Sbjct: 315 TALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVE 374

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
              ++VMGA+ ACA +G ++ G+++H  + +  +  D+ V  +LI MY KC  +D A  I
Sbjct: 375 MTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEI 434

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F ++  K ++S+N MI G   NG   EA+  F +M+ + I  D    + V+ A +   + 
Sbjct: 435 FENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVL 494

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
            +   I   + R C ++  +   + LVD+ ++ G +  A  + + M  + ++  W  ++
Sbjct: 495 PQAKWIHGLVIRTC-LDKNVFVATALVDMYAKCGAVHTARKLFDMMDER-HVTTWNAMI 551


>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
 gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
          Length = 695

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 195/606 (32%), Positives = 326/606 (53%), Gaps = 49/606 (8%)

Query: 8   KFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAER 67
           + S K P  S L  S T  H+   LA+L    L T P      L+S    N      A  
Sbjct: 82  RCSSKLPTASRLP-SPTEPHLPADLARL----LKTRPL---HALLS----NASTYRAARH 129

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           LF+ + +P   +    + G ++ S  Q+ +    ++ R+G  + +   P VLK+C     
Sbjct: 130 LFDVVPRPTAALCCAFLSGLSKLSLHQEFIEVVSSLHRRGGAIPSGCIPLVLKSCAQSAA 189

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
             +G++ H   +  G L DVFV   L+  Y+K G M  A   F+   +KD +  N ++ G
Sbjct: 190 SCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCLITG 249

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK-------------------------- 221
           + + G++ +AR +FD MP++ + SW+ MI  Y                            
Sbjct: 250 YSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNAITI 309

Query: 222 --------KKGDISS---ARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER 270
                   K GD+ +   AR       ++++I   ++++ Y K   +  A+  F+ MP R
Sbjct: 310 TTVFSICAKTGDLDTGRRARAWIREEDLQNVIVHTALMEMYVKCRAIDEARHEFDRMPRR 369

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           +V +WS MI GY+Q+G P E+L LF  M     +P+ ++++G +SACAQ+G+ +LG+ I 
Sbjct: 370 DVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIG 429

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
            +++   + +   + +ALIDMY KCG +  AR +F  M +K V+++N MI GL +NGF E
Sbjct: 430 NYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVVVTWNSMIRGLALNGFAE 489

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
           +A+  + +M  +GI  +++ F+ +L AC+H+GL  +G   F+ MK+   + P++EH +C+
Sbjct: 490 DAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKGIAFFEEMKKKQHVSPQVEHCACI 549

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           VDLL ++G L +A   +  M ++PN  +W TLL ACR H +V LA++    LV L+ ++ 
Sbjct: 550 VDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAAGKLVALEPNNS 609

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570
            +YVLLSNIYADAG+W     IR +MR + ++K +  S IE+DG +  F+  + +  +S 
Sbjct: 610 SIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELDGEVHRFLVQDTYHPRSA 669

Query: 571 ELELVI 576
           E+  V+
Sbjct: 670 EIYNVV 675


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 207/594 (34%), Positives = 313/594 (52%), Gaps = 73/594 (12%)

Query: 61  NMDQAERLFNQIYQ---PNTYMHNTMIRGYTQSSNPQKALSFYVNM------KRKGLLVD 111
           ++++A  +F++I Q    +    N+++  + +SSN   AL  +  M      K      D
Sbjct: 212 SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 271

Query: 112 NYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE 171
             +   +L ACG L  + +  E+HG  ++ G   DVFV N LI  Y+KCG M  A  VF 
Sbjct: 272 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFN 331

Query: 172 GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDIS 227
             E KD+VSWN ++ G+ + G    A E+F  M ++    D ++W+ +I GY  ++G   
Sbjct: 332 MMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGY-SQRGCSH 390

Query: 228 SARILFEHMPI------------------------------------------------- 238
            A  LF  M                                                   
Sbjct: 391 EALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGED 450

Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMP--ERNVFSWSIMIDGYAQHGNPKEALYLFR 296
           +DL+ +N++ID Y+K     AA+ +F+++P  ERNV +W++MI G+AQ+G+  +AL LF 
Sbjct: 451 EDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFV 510

Query: 297 EMLCQ--GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI--TMDMIVQTALIDMY 352
           EM+ +  GV P+  ++   + ACA + A+ +GK IH ++ R     +    V   LIDMY
Sbjct: 511 EMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMY 570

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCG +D AR +F SM++K+ IS+  M+ G GM+G G EAL  F +M   G   DD+ FL
Sbjct: 571 SKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFL 630

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            VL ACSH G+  +G   F SM    G+ P+ EHY+C +DLL+R+G L++A   V+ MPM
Sbjct: 631 VVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPM 690

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           +P   +W  LL ACR H NV LAE  +  LVE+ A++ G Y L+SNIYA AG W+   RI
Sbjct: 691 EPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARI 750

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586
           R +M+K  IKK  G S ++       F  G+    +S  L   I + +++ I+R
Sbjct: 751 RHLMKKSGIKKRPGCSWVQGQKGTASFFVGD----RSHPLSPQIYALLESLIDR 800



 Score =  218 bits (554), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 158/554 (28%), Positives = 258/554 (46%), Gaps = 87/554 (15%)

Query: 15  LVSLLQISKTTTHILQILAQLTTND---------------LITEPFTLSQLLMSLTSPNT 59
             SLL+  K+   + QI  Q+  +                L +EPF   + L +    + 
Sbjct: 47  FASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVASY 106

Query: 60  LN---MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYP 116
           L     D A  +  ++        N +IR + +      A++    M R G   D++T P
Sbjct: 107 LACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLP 166

Query: 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE---GS 173
            VLKACG L     G+  HG +   GF  +VF+ N L+ MYS+CG +  A  +F+     
Sbjct: 167 HVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQR 226

Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEM----------------------------- 204
            I D++SWN ++   V+      A ++F +M                             
Sbjct: 227 GIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 286

Query: 205 --PQ--------------KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMI 248
             PQ               D    + +ID Y  K G + +A  +F  M  KD++SWN+M+
Sbjct: 287 AVPQTKEVHGNAIRNGTFPDVFVGNALIDAY-AKCGLMENAVKVFNMMEFKDVVSWNAMV 345

Query: 249 DGYAKIGDLVAAQQLFNEMPERN----VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
            GY++ G+  AA +LF  M + N    V +W+ +I GY+Q G   EAL LFR+M+  G  
Sbjct: 346 AGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSL 405

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVF-MKRSRITM---------DMIVQTALIDMYMK 354
           P+ ++++  +SACA +GA   G  IH + +K   +T+         D++V  ALIDMY K
Sbjct: 406 PNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSK 465

Query: 355 CGSLDEARRIF--YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE--GIPKDDLI 410
           C S   AR IF    + ++NV+++ VMI G    G   +ALK F +M +E  G+  +   
Sbjct: 466 CRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYT 525

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS-CLVDLLSRAGELEQALNIVES 469
              +L+AC+H      G +I   + RH   E      + CL+D+ S+ G+++ A ++ +S
Sbjct: 526 ISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDS 585

Query: 470 MPMKPNLALWGTLL 483
           M  K  ++ W +++
Sbjct: 586 MSQKSAIS-WTSMM 598


>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 532

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 193/563 (34%), Positives = 314/563 (55%), Gaps = 69/563 (12%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
           +SLL+  +T + I Q+ + L  +    +PF   +++      +  ++  A +LF  +   
Sbjct: 14  LSLLEQCRTMSQIKQMHSHLIVSASRLDPFAAGKIISLFAVSSNADISHAYKLFLSLPHR 73

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC--GVLMGLVEGTE 133
            T++ NT+IR + + +    ALS Y NM + G L +NYT+ FVL+AC     +GL     
Sbjct: 74  TTFIWNTIIRIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVLRACTDNSPVGLAS--- 130

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
            H +V+K+G+                                    S++ VL G +    
Sbjct: 131 -HAQVIKLGW-----------------------------------ESYDFVLNGLIHL-- 152

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAK 253
                            +WS            + +AR LF+    +D+I+W ++I+GY K
Sbjct: 153 ---------------YANWS-----------SVEAARKLFDVSTCRDVITWTALINGYVK 186

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313
            G +  A++LF++MPERN  SWS MI GY   G  +EAL LF ++   G+RP+   ++GA
Sbjct: 187 SGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAGIVGA 246

Query: 314 ISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNV 373
           ++AC+ +G+LD G+WIH ++ R+   +D ++ TAL+DMY KCG ++ A  +F  M  K+ 
Sbjct: 247 LTACSYLGSLDHGRWIHAYVDRNGTELDRVLGTALVDMYAKCGCIEIACSVFEKMPDKDA 306

Query: 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433
            ++  +I+GL  +G   +A++ F +M++E +  +++ F+ VL ACS  GL  EG RIF  
Sbjct: 307 FAFTSLISGLANHGQSADAIQLFGRMQSEKVIPNEVTFICVLSACSRMGLVDEGLRIFNC 366

Query: 434 MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT 493
           M    GIEP ++HY C+VDLL RAG LE+A  +V  MPM+P+  + G LL +CR H +V 
Sbjct: 367 MSVVYGIEPGVQHYGCMVDLLGRAGLLEEAKRLVREMPMEPDSYVLGALLNSCRVHGDVE 426

Query: 494 LAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEID 553
           L +  VE LVE   D  G++VLLSN+YA +  W+  +++RK M  +K+KK  G S IEID
Sbjct: 427 LGKETVESLVERGLDHGGVHVLLSNMYASSNQWDWVVKVRKEMGAKKVKKVPGCSSIEID 486

Query: 554 GNIKEFVSGEIFDVQSEELELVI 576
           G++ EF++G++  ++ E++ LV+
Sbjct: 487 GSVSEFIAGDMSYLRVEDVMLVL 509


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 197/529 (37%), Positives = 304/529 (57%), Gaps = 30/529 (5%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK------GLL----- 109
           N+  A  LF+Q+ + +    N M+ GY Q+   ++A   +  M  K      G+L     
Sbjct: 45  NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQ 104

Query: 110 ---VDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVV------------NGLI 154
              +++    F  KA      L+    + G  VK   L D   +            N +I
Sbjct: 105 NGRIEDARRLFESKA---DWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMI 161

Query: 155 GMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSI 214
             Y++ G +  A+ +FE S ++D+ +W  ++ G+V+ G + +AR VFD MP+K+++SW+ 
Sbjct: 162 SGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNA 221

Query: 215 MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
           +I GY + K  +  AR LFE MP +++ SWN+MI GYA+ GD+  A+  F+ MP+R+  S
Sbjct: 222 IIAGYVQCK-RMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSIS 280

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W+ +I GYAQ G  +EAL+LF EM   G R +  +    +S CA++ AL+LGK +H  + 
Sbjct: 281 WAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVV 340

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
           ++ +     V  AL+ MY KCG++D+A  +F  + +K V+S+N MIAG   +GFG+EAL 
Sbjct: 341 KAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALM 400

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
            F  M+  GI  DD+  +GVL ACSH+GL  +G   F SM +  GI    +HY+C++DLL
Sbjct: 401 LFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLL 460

Query: 455 SRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYV 514
            RAG L+ A N++++MP +P+ A WG LL A R H N  L E   + + E++ D+ G+YV
Sbjct: 461 GRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYV 520

Query: 515 LLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           LLSN+YA +G W    R+R  MR R +KK  G S +E+   I  F  G+
Sbjct: 521 LLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGD 569



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 142/291 (48%), Gaps = 21/291 (7%)

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           + G  +  +L AA+ LF++MPER+V SW+ M+ GYAQ+G  KEA  +F EM C+    + 
Sbjct: 37  LRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NS 92

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           IS  G ++A  Q G ++  + +      S+   ++I    ++  Y+K   L +AR IF  
Sbjct: 93  ISWNGMLAAYVQNGRIEDARRLF----ESKADWELISWNCMMGGYVKRNRLVDARGIFDR 148

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           M +++ +S+N MI+G   NG   EA + F     E   +D   +  ++     +G+  E 
Sbjct: 149 MPERDEVSWNTMISGYAQNGELLEAQRLF----EESPVRDVFTWTAMVSGYVQNGMLDEA 204

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
            R+F  M     +      ++ ++    +   ++QA  + E+MP + N++ W T++    
Sbjct: 205 RRVFDGMPEKNSVS-----WNAIIAGYVQCKRMDQARELFEAMPCQ-NVSSWNTMITGYA 258

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
            + ++  A    +    +   D   +  +   YA +G  E AL +   M++
Sbjct: 259 QNGDIAQARNFFD---RMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKR 306


>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
           [Vitis vinifera]
          Length = 575

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 186/513 (36%), Positives = 292/513 (56%), Gaps = 40/513 (7%)

Query: 83  MIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMG 142
           +IR Y     P++AL  Y  ++RKG+ +     P VLKAC  L  +  G  +H E +K G
Sbjct: 66  LIRSYLSQGAPREALLVYTGLRRKGVYLLGVA-PLVLKACASLSIVKHGKALHAESIKNG 124

Query: 143 FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL----------------- 185
              DV +   L+ MY+KCG++  +R VF+    ++ V+WN ++                 
Sbjct: 125 VDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFE 184

Query: 186 --------------RGFVECGEMGKAREVFDEMPQ--KDAISWSIMIDGYRKKKGDISSA 229
                          GF   G+   AR  FD++P   ++ ++W++M+DGY  +  ++ +A
Sbjct: 185 KMSIRTAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGY-ARNAEMEAA 243

Query: 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
           R +FE MP ++  +W+SMI GY K G++  A+ +F+ +P RN+ +W+ +I GYAQ+G  +
Sbjct: 244 REVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSE 303

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           EAL  F +M  +G  PD +++   +SAC+Q+G LD GK IH  M    I ++  V   L+
Sbjct: 304 EALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLV 363

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           DMY KCG L  AR IF  M  +N   +N MI+G  ++G  +EAL+ F +ME      D++
Sbjct: 364 DMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEI 423

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            FL VL AC+H G    G  IF  M+++ G+   ++HY CL+DLL RAG +++A ++++ 
Sbjct: 424 TFLSVLSACAHGGFVNAGLEIFSRMEKY-GLTTGIKHYGCLIDLLGRAGRIKEAYDLIKR 482

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD---DC-GLYVLLSNIYADAGM 525
           MP+KPN  +WG LL ACR H ++ +A+ VVE +V++ ++    C   YVLLSNIYA +  
Sbjct: 483 MPVKPNDVVWGALLGACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLLSNIYAASDR 542

Query: 526 WEHALRIRKMMRKRKIKKETGRSVIEIDGNIKE 558
           WE A ++R  M  +  +K +G S I    N  E
Sbjct: 543 WEKAEKMRMEMANKGFQKTSGCSSIMPGNNTHE 575



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 109/234 (46%), Gaps = 10/234 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N+ +A  +F++I   N    N++I GY Q+   ++AL  +  M+ +G   D  T   VL 
Sbjct: 270 NVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLS 329

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L  G +IH  +   G   + FV+NGL+ MY+KCG +  AR +FEG   ++   
Sbjct: 330 ACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRAC 389

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHM 236
           WN ++ GF   G+  +A E F  M       D I++  ++       G +++   +F  M
Sbjct: 390 WNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSAC-AHGGFVNAGLEIFSRM 448

Query: 237 PIKDLIS----WNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQH 285
               L +    +  +ID   + G +  A  L   MP + N   W  ++     H
Sbjct: 449 EKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVH 502



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 112/231 (48%), Gaps = 17/231 (7%)

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG----AISACAQVGALDLGKWI 329
           +W  +I  Y   G P+EAL ++      G+R   + ++G     + ACA +  +  GK +
Sbjct: 62  NWCHLIRSYLSQGAPREALLVY-----TGLRRKGVYLLGVAPLVLKACASLSIVKHGKAL 116

Query: 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFG 389
           H    ++ +  D+++ T+L+ MY KCG++ ++R++F  M ++N +++N MI G   NG  
Sbjct: 117 HAESIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDS 176

Query: 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449
           + A+  F +M      +  + ++ ++   + SG      R F  +         +  ++ 
Sbjct: 177 KSAVLLFEKMSI----RTAVTWIEMIDGFARSGDTETARRFFDDVPSEL---RNVVTWTV 229

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVE 500
           +VD  +R  E+E A  + E MP + N   W +++       NV  A  + +
Sbjct: 230 MVDGYARNAEMEAAREVFEGMPQR-NFFAWSSMISGYCKKGNVKEARSIFD 279


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 187/513 (36%), Positives = 300/513 (58%), Gaps = 7/513 (1%)

Query: 67  RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
           ++F ++   +    NTMI G  +    ++A   Y  M+R+G++ +  TY  +L AC    
Sbjct: 283 QVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSA 342

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
            L  G EIH  V K GF  D+ V N LI MYS+CG +  AR VF+    KD++SW  ++ 
Sbjct: 343 ALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIG 402

Query: 187 GFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARI---LFEHMPIK 239
           G  + G   +A  V+ EM Q     + ++++ +++            RI   + E     
Sbjct: 403 GLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLAT 462

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           D    N++++ Y+  G +  A+Q+F+ M +R++ +++ MI GYA H   KEAL LF  + 
Sbjct: 463 DAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQ 522

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
            +G++PD ++ +  ++ACA  G+L+  + IH  +++     D  V  AL+  Y KCGS  
Sbjct: 523 EEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFS 582

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           +A  +F  MTK+NVIS+N +I G   +G G++AL+ F +M+ EG+  D + F+ +L ACS
Sbjct: 583 DASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACS 642

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           H+GL  EG R F SM +   I P +EHY C+VDLL RAG+L++A  ++++MP + N  +W
Sbjct: 643 HAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIW 702

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
           G LL ACR H NV +AE   E  ++L  D+  +YV LS++YA AGMW+ A ++RK+M +R
Sbjct: 703 GALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQR 762

Query: 540 KIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            + KE GRS I++   +  FV+ +    QSE++
Sbjct: 763 GVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKI 795



 Score =  221 bits (564), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 151/521 (28%), Positives = 265/521 (50%), Gaps = 18/521 (3%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMH--NTMIRGY 87
           Q+   +  +  + + +T++ L+       ++  ++A +++ ++      +H  N M+ GY
Sbjct: 44  QVHQHIIQHRTVPDQYTVNALINMYIQCGSI--EEARQVWKKLSYMERTVHSWNAMVVGY 101

Query: 88  TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV 147
            Q    +KAL     M++ GL  D  T    L +C     L  G EIH + ++ G L DV
Sbjct: 102 IQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDV 161

Query: 148 FVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK 207
            V N ++ MY+KCG +  AR VF+  E K +VSW + + G+ +CG    A E+F +M Q+
Sbjct: 162 KVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQE 221

Query: 208 ----DAISWSIMIDGYRK----KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVA 259
               + I++  +++ +      K G    +RIL       D     +++  YAK G    
Sbjct: 222 GVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHE-SDTAVGTALVKMYAKCGSYKD 280

Query: 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
            +Q+F ++  R++ +W+ MI G A+ G  +EA  ++ +M  +GV P+ I+ +  ++AC  
Sbjct: 281 CRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVN 340

Query: 320 VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVM 379
             AL  GK IH  + ++  T D+ VQ ALI MY +CGS+ +AR +F  M +K+VIS+  M
Sbjct: 341 SAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAM 400

Query: 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439
           I GL  +GFG EAL  + +M+  G+  + + +  +L ACS       G RI Q +    G
Sbjct: 401 IGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVE-AG 459

Query: 440 IEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVV 499
           +       + LV++ S  G ++ A  + + M ++ ++  +  ++     H     A  + 
Sbjct: 460 LATDAHVGNTLVNMYSMCGSVKDARQVFDRM-IQRDIVAYNAMIGGYAAHNLGKEALKLF 518

Query: 500 EGLVE--LKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
           + L E  LK D    Y+ + N  A++G  E A  I  ++RK
Sbjct: 519 DRLQEEGLKPDKV-TYINMLNACANSGSLEWAREIHTLVRK 558



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/482 (26%), Positives = 242/482 (50%), Gaps = 43/482 (8%)

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           ++++G  V++  Y  +LK C  +  LV G ++H  +++   + D + VN LI MY +CG 
Sbjct: 14  LQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGS 73

Query: 163 MGCARSVFEGSEI--KDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR 220
           +  AR V++      + + SWN ++ G+++ G + KA ++  +M Q         I  + 
Sbjct: 74  IEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFL 133

Query: 221 ---KKKGDISSAR-ILFEHMP---IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
              K  G +   R I F+ M    + D+   N +++ YAK G +  A+++F++M +++V 
Sbjct: 134 SSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVV 193

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
           SW+I I GYA  G  + A  +F++M  +GV P+ I+ +  ++A +   AL  GK +H  +
Sbjct: 194 SWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRI 253

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
             +    D  V TAL+ MY KCGS  + R++F  +  +++I++N MI GL   G+ EEA 
Sbjct: 254 LNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEAS 313

Query: 394 KCFAQMETEGIPKDDLIFLGVLIACS-----------HSGLATEGY-------RIFQSMK 435
           + + QM+ EG+  + + ++ +L AC            HS +A  G+           SM 
Sbjct: 314 EVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMY 373

Query: 436 RHCG------------IEPKLEHYSCLVDLLSRAGELEQALNIVESMP---MKPNLALWG 480
             CG            +   +  ++ ++  L+++G   +AL + + M    ++PN   + 
Sbjct: 374 SRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYT 433

Query: 481 TLLLACRNHQNVTLAEVVVEGLVELK-ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
           ++L AC +   +     + + +VE   A D  +   L N+Y+  G  + A ++   M +R
Sbjct: 434 SILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQR 493

Query: 540 KI 541
            I
Sbjct: 494 DI 495



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 11/237 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  A ++F+++ Q +   +N MI GY   +  ++AL  +  ++ +GL  D  TY  +L 
Sbjct: 479 SVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLN 538

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC     L    EIH  V K GF  D  V N L+  Y+KCG    A  VFE    ++++S
Sbjct: 539 ACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVIS 598

Query: 181 WNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           WN ++ G  + G    A ++F+ M     + D +++  ++       G +   R  F  M
Sbjct: 599 WNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSAC-SHAGLLEEGRRYFCSM 657

Query: 237 P-----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
                 I  +  +  M+D   + G L  A+ L   MP + N   W  ++     HGN
Sbjct: 658 SQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGN 714


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 186/525 (35%), Positives = 306/525 (58%), Gaps = 9/525 (1%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A R+F+ +   +     T+   Y +S   +++L  Y  M ++ +     TY  VL ACG 
Sbjct: 183 ARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGS 242

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L  L +G +IH  +V+  +  DV V   L  MY KCG    AR VFE    +D+++WN +
Sbjct: 243 LAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTM 302

Query: 185 LRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMPIKD 240
           +RGFV+ G++ +A   F  M ++    D  +++ ++     + G ++  + +        
Sbjct: 303 IRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSAC-ARPGGLARGKEIHARAAKDG 361

Query: 241 LIS----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
           L+S     N++I+ Y+K G +  A+Q+F+ MP+R+V SW+ ++  YA      E+   F+
Sbjct: 362 LVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFK 421

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
           +ML QGV+ + I+ M  + AC+   AL  GK IH  + ++ +  D+ V  AL+ MY KCG
Sbjct: 422 QMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCG 481

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
           S+++A R+F  M+ ++V+++N +I GLG NG G EAL+ +  M++EG+  +   F+ VL 
Sbjct: 482 SVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLS 541

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
           AC    L  EG R F  M +  GI P  +HY+C+VD+L+RAG L +A +++ ++P+KP+ 
Sbjct: 542 ACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSA 601

Query: 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
           A+WG LL ACR H NV + E   E  ++L+  + GLYV LS IYA AGMW    ++RK M
Sbjct: 602 AMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFM 661

Query: 537 RKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
           ++R +KKE GRS IEI G +  FV+ +    +++E+   +++  K
Sbjct: 662 KERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLKK 706



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/420 (28%), Positives = 197/420 (46%), Gaps = 73/420 (17%)

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           + RKG  VD+Y Y  +L++C     L  G ++H  +++ G   +V++ N L+ +Y+    
Sbjct: 19  LHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYA---- 74

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK 222
                                       CG + +AR++FD+   K  +SW++MI GY   
Sbjct: 75  ---------------------------HCGSVNEARQLFDKFSNKSVVSWNVMISGY-AH 106

Query: 223 KGDISSARILFEHMPIKDL-------------------ISW------------------- 244
           +G    A  LF  M  + L                   ++W                   
Sbjct: 107 RGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTV 166

Query: 245 -NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
            N++I  YAK G +  A+++F+ M  R+  SW+ +   YA+ G  +E+L  +  ML + V
Sbjct: 167 GNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERV 226

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
           RP  I+ M  +SAC  + AL+ GK IH  +  S    D+ V TAL  MYMKCG+  +AR 
Sbjct: 227 RPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDARE 286

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           +F  ++ ++VI++N MI G   +G  EEA   F +M  EG+  D   +  VL AC+  G 
Sbjct: 287 VFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGG 346

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
              G  I     +  G+   +   + L+++ S+AG ++ A  + + MP K ++  W TLL
Sbjct: 347 LARGKEIHARAAKD-GLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTTLL 404



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 124/431 (28%), Positives = 212/431 (49%), Gaps = 11/431 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++++A +LF++    +    N MI GY      Q+A + +  M+++ L  D +T+  +L 
Sbjct: 78  SVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILS 137

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC     L  G EIH  V++ G   D  V N LI MY+KCG +  AR VF+    +D VS
Sbjct: 138 ACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVS 197

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRK----KKGDISSARIL 232
           W  +   + E G   ++ + +  M Q+      I++  ++         +KG    A I+
Sbjct: 198 WTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIV 257

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
            E     D+    ++   Y K G    A+++F  +  R+V +W+ MI G+   G  +EA 
Sbjct: 258 -ESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAH 316

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
             F  ML +GV PD  +    +SACA+ G L  GK IH    +  +  D+    ALI+MY
Sbjct: 317 GTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMY 376

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            K GS+ +AR++F  M K++V+S+  ++          E+   F QM  +G+  + + ++
Sbjct: 377 SKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYM 436

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            VL ACS+      G  I   + +  G+   L   + L+ +  + G +E A+ + E M M
Sbjct: 437 CVLKACSNPVALKWGKEIHAEVVK-AGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSM 495

Query: 473 KPNLALWGTLL 483
           + ++  W TL+
Sbjct: 496 R-DVVTWNTLI 505



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 80/144 (55%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +M  A ++F+++ + +     T++  Y       ++ + +  M ++G+  +  TY  VLK
Sbjct: 381 SMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLK 440

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC   + L  G EIH EVVK G L D+ V N L+ MY KCG +  A  VFEG  ++D+V+
Sbjct: 441 ACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVT 500

Query: 181 WNLVLRGFVECGEMGKAREVFDEM 204
           WN ++ G  + G   +A + ++ M
Sbjct: 501 WNTLIGGLGQNGRGLEALQRYEVM 524


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 192/510 (37%), Positives = 301/510 (59%), Gaps = 17/510 (3%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           NT +R   +     +ALS Y  M R G   + +T+PF LK+C  L   + G++ HG++ K
Sbjct: 9   NTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITK 68

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS--EIKDLVSWNLVLRGFVECGEMGKAR 198
           +G + + FV  GLI MY K   +  AR VFE +    K  V +N ++ G+V   +   A 
Sbjct: 69  VGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAV 128

Query: 199 EVFDEMPQKDAISWSIMIDGYRK-----------KKGDISSARILFEHMPIKDLISWNSM 247
            +F +M ++     S+ + G                   S+ +  F+     D+   N  
Sbjct: 129 LLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFD----SDVSVVNCF 184

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           I  Y K G +  AQ+LF+EMP + + SW+ M+ GYAQ+G     L L+R M   GV PD 
Sbjct: 185 ITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDP 244

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           ++++G +S+CA +GA  +G  +   M+ S  T +  +  ALI+MY +CG+L +A+ +F  
Sbjct: 245 VTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDG 304

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           M ++ ++S+  +I G GM+G GE A++ F +M   GI  D   F+ VL ACSH+GL  +G
Sbjct: 305 MPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQG 364

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
              F+ MKR+  +EP  EHYSC+VDLL RAG L++A  ++ESMP+KP+ A+WG LL AC+
Sbjct: 365 LEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACK 424

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
            H+NV LAE+  E ++EL+ ++ G YVLLSNIY++A   +  LRIR MM+++K+KK+ G 
Sbjct: 425 IHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGC 484

Query: 548 SVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           S +E+ G +  F+ G+   +QS+E+  V++
Sbjct: 485 SYVELKGRVHPFIVGDRNHLQSDEIYRVLE 514



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 176/352 (50%), Gaps = 12/352 (3%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPN--TYMHNTMIRGY 87
           Q   Q+T    + EPF  + L+ S+    +L +D A ++F + +     T  +N ++ GY
Sbjct: 61  QFHGQITKVGCVFEPFVQTGLI-SMYCKGSL-VDNARKVFEENFHSRKLTVCYNALVSGY 118

Query: 88  TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV 147
             +S    A+  +  M  +G+ V++ T   ++ AC   + L  G+ +H   +K GF  DV
Sbjct: 119 VSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDV 178

Query: 148 FVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK 207
            VVN  I MY KCG +  A+ +F+   +K L+SWN ++ G+ + G      E++  M   
Sbjct: 179 SVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMN 238

Query: 208 DAISWSIMIDGYRKKKGDISSARILFE---HMPIKDLIS----WNSMIDGYAKIGDLVAA 260
                 + + G      ++ +  +  E    M      S     N++I+ YA+ G+L  A
Sbjct: 239 GVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKA 298

Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
           Q +F+ MPER + SW+ +I GY  HG+ + A+ LF+EM+  G+ PD  + +  +SAC+  
Sbjct: 299 QAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHA 358

Query: 321 GALDLGKWIHVFMKRS-RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
           G  D G      MKR+ ++       + ++D+  + G L EA+ +  SM  K
Sbjct: 359 GLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIK 410



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 100/211 (47%), Gaps = 4/211 (1%)

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W+  +   A+     +AL L+ +ML  G RP+  +   A+ +CA +    LG   H  + 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYS--MTKKNVISYNVMIAGLGMNGFGEEA 392
           +     +  VQT LI MY K   +D AR++F     ++K  + YN +++G   N    +A
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
           +  F QM  EG+P + +  LG++ AC        G  +  S  ++ G +  +   +C + 
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKY-GFDSDVSVVNCFIT 186

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLL 483
           +  + G +  A  + + MP+K  L  W  ++
Sbjct: 187 MYMKCGSVNYAQKLFDEMPVK-GLISWNAMV 216


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 192/538 (35%), Positives = 300/538 (55%), Gaps = 38/538 (7%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++ +A  LF ++ + +T   NTMI   +Q     + L+ ++ M  +G   ++ TY  VL 
Sbjct: 195 SVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLS 254

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  +  L  G  +H  +V+M    DV+   GLI MY+KCG +  AR VF+G    + VS
Sbjct: 255 ACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVS 314

Query: 181 WNLVLRGFVECGEMGKAREVFDEM--------------------PQKD------------ 208
           W  ++ G  + G   +A  +F++M                     QKD            
Sbjct: 315 WTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTI 374

Query: 209 ------AISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQ 262
                 ++  +  +     K GD+  A   FE MPI+D+ISW +MI  +++ GD+  A++
Sbjct: 375 TRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKARE 434

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
            F++MPERNV SW+ M+  Y Q G  +E L ++ +ML +GV+ D I+   +ISACA +  
Sbjct: 435 YFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAV 494

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
           L LG  I    ++   + ++ V  +++ MY +CG ++EA+++F S+  KN++S+N M+AG
Sbjct: 495 LILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAG 554

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
              NG G + ++ F +M   G   D + ++ VL  CSHSG  +EG   F SM +  GI P
Sbjct: 555 YAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYFLSMTKDHGISP 614

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
             EH+ C+VDLL RAG+LEQA N++  MP KPN A+WG LL ACR H N  LAE+ V+ L
Sbjct: 615 MSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAACRIHGNTKLAELAVKNL 674

Query: 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
           +EL A+  G Y LL+NIY+++G  +    +RK+MR + ++K  G S IE+D  +  F 
Sbjct: 675 LELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMRDKGVRKNPGCSWIEVDNRVHVFT 732



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 140/506 (27%), Positives = 235/506 (46%), Gaps = 60/506 (11%)

Query: 119 LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDL 178
           +K C  L  +    ++H +++ MG    +F+ N L+ MYS CG +  A  VF G    ++
Sbjct: 11  MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNV 70

Query: 179 VSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK----------------- 221
            SWN ++ GF + G+M +A ++F++MP++D++SW+ M+ GY                   
Sbjct: 71  YSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGYL 130

Query: 222 ------------------------------KKGDISSARILFEHMPIKDLISWNSMIDGY 251
                                         K G +  A+ +F   P   L  WNSMI GY
Sbjct: 131 KLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGY 190

Query: 252 AKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
           +K G +  A +LF +MPER+  SW+ MI   +QHG   E L  F EM  QG RP+ ++  
Sbjct: 191 SKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYA 250

Query: 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
             +SAC  +  L+ G  +H  + R    +D+     LIDMY KCG L+ AR++F  +T+ 
Sbjct: 251 SVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEH 310

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           N +S+  +I G+   GF EEAL  F QM    +  D      VL  C    L+ +   I 
Sbjct: 311 NAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVC----LSQKDISIG 366

Query: 432 QSMKRHC---GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
           + +  H    G++  +   + LV + ++ G++ +A +  E MP++ ++  W  ++ A   
Sbjct: 367 EQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIR-DIISWTAMITAFSQ 425

Query: 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE--TG 546
             +V  A    + + E        +  +   Y   G WE  L++   M +  +K +  T 
Sbjct: 426 AGDVEKAREYFDKMPERNVIS---WNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITF 482

Query: 547 RSVIEIDGNIKEFVSGEIFDVQSEEL 572
            + I    ++   + G     Q+E+L
Sbjct: 483 STSISACADLAVLILGNQILAQAEKL 508



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 140/516 (27%), Positives = 222/516 (43%), Gaps = 83/516 (16%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL---------VDN 112
           +  A R+F  I  PN Y  NTMI G+  S   ++A   +  M  +  +           N
Sbjct: 55  ISDAYRVFGGIMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHN 114

Query: 113 YTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG 172
                 +KA G L  L    ++HG   K  F  D  V   ++ MY KCG M  A+ VF  
Sbjct: 115 GELEATIKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCR 174

Query: 173 SEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMID--------------- 217
           +    L  WN ++ G+ + G + KA E+F +MP++D +SW+ MI                
Sbjct: 175 TPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTF 234

Query: 218 ------GYRKKKGDISS------------------ARILFEHMPIKDLISWNSMIDGYAK 253
                 G+R      +S                  ARI+    P  D+ +   +ID YAK
Sbjct: 235 LEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIV-RMEPCLDVYAGCGLIDMYAK 293

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313
            G L +A+Q+F+ + E N  SW+ +I G AQ G  +EAL LF +M    V  D  ++   
Sbjct: 294 CGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATV 353

Query: 314 ISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC------------------ 355
           +  C     + +G+ +H       +   + V  AL+ MY KC                  
Sbjct: 354 LGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDI 413

Query: 356 -------------GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
                        G +++AR  F  M ++NVIS+N M+A     G+ EE LK + QM  E
Sbjct: 414 ISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLRE 473

Query: 403 GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
           G+  D + F   + AC+   +   G +I    ++  G    +   + +V + SR G++E+
Sbjct: 474 GVKTDWITFSTSISACADLAVLILGNQILAQAEK-LGFSSNVSVANSVVTMYSRCGQIEE 532

Query: 463 ALNIVESMPMKPNLALWGTLLLA-CRNHQNVTLAEV 497
           A  +  S+ MK NL  W  ++    +N Q   + E+
Sbjct: 533 AQKMFSSIVMK-NLVSWNAMMAGYAQNGQGRKVIEI 567



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 88/197 (44%), Gaps = 21/197 (10%)

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
           ++  CA + ++ + + +H  +    +   + +Q  L++MY  CG + +A R+F  +   N
Sbjct: 10  SMKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPN 69

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
           V S+N MI+G   +G   EA K F +M      +D + +  ++    H+G      +   
Sbjct: 70  VYSWNTMISGFADSGQMREAEKLFEKMPE----RDSVSWNSMMSGYFHNGELEATIKASG 125

Query: 433 SM--------------KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
           S+              K   GI+  +E  + ++D+  + G ++ A  +    P  P+L  
Sbjct: 126 SLGYLKLALQLHGFAEKFDFGIDTCVE--TSVLDMYIKCGAMDFAQKVFCRTP-NPSLFC 182

Query: 479 WGTLLLACRNHQNVTLA 495
           W +++     + +V  A
Sbjct: 183 WNSMIYGYSKYGSVKKA 199


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 186/506 (36%), Positives = 295/506 (58%), Gaps = 7/506 (1%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  A R+F+ I   N      MI  +   +   +A   Y  MK  G   D  T+  +L 
Sbjct: 146 SLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLN 205

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           A      L  G ++H E+ K G   +  V   L+GMY+KCG +  A+ +F+    K++V+
Sbjct: 206 AFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVT 265

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDA----ISWSIMIDGYRKK---KGDISSARILF 233
           W L++ G+ + G++  A E+ ++M Q +     I+++ ++ G       +      R + 
Sbjct: 266 WTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYII 325

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
           +    +++   N++I  Y K G L  A++LF ++P R+V +W+ M+ GYAQ G   EA+ 
Sbjct: 326 QSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAID 385

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           LFR M  QG++PD ++   A+++C+    L  GK IH  +  +  ++D+ +Q+AL+ MY 
Sbjct: 386 LFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYA 445

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCGS+D+AR +F  M+++NV+++  MI G   +G   EAL+ F QM+ +GI  D + F  
Sbjct: 446 KCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTS 505

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           VL AC+H GL  EG + F+SM    GI+P +EHYSC VDLL RAG LE+A N++ +MP +
Sbjct: 506 VLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQ 565

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
           P  ++WG LL ACR H +V   E   E +++L  DD G YV LSNIYA AG +E A ++R
Sbjct: 566 PGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVR 625

Query: 534 KMMRKRKIKKETGRSVIEIDGNIKEF 559
           ++M KR + KE G+S IE+DG +  F
Sbjct: 626 QVMEKRDVVKEPGQSWIEVDGKVHVF 651



 Score =  201 bits (511), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 116/404 (28%), Positives = 208/404 (51%), Gaps = 11/404 (2%)

Query: 94  QKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGL 153
           ++AL     M  +G  V +  +  +L+ C  L  L +G E+H  ++K G   + ++ N L
Sbjct: 78  KEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTL 137

Query: 154 IGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDA 209
           + MY+KCG +  AR VF+G   +++VSW  ++  FV   +  +A + ++ M     + D 
Sbjct: 138 LSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDK 197

Query: 210 ISWSIMIDGYRKKK----GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
           +++  +++ +   +    G      I    + ++  +   S++  YAK GD+  AQ +F+
Sbjct: 198 VTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG-TSLVGMYAKCGDISKAQVIFD 256

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
           ++PE+NV +W+++I GYAQ G    AL L  +M    V P+ I+    +  C    AL+ 
Sbjct: 257 KLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEH 316

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
           GK +H ++ +S    ++ V  ALI MY KCG L EAR++F  +  ++V+++  M+ G   
Sbjct: 317 GKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQ 376

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
            GF +EA+  F +M+ +GI  D + F   L +CS      EG  I Q +  H G    + 
Sbjct: 377 LGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLV-HAGYSLDVY 435

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
             S LV + ++ G ++ A  +   M  + N+  W  ++  C  H
Sbjct: 436 LQSALVSMYAKCGSMDDARLVFNQMSER-NVVAWTAMITGCAQH 478



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 107/202 (52%), Gaps = 3/202 (1%)

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
           + G  KEAL +   M+ QG R       G +  CA++ +L+ G+ +H  + +S I  +  
Sbjct: 73  KQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 132

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           ++  L+ MY KCGSL +ARR+F  +  +N++S+  MI          EA KC+  M+  G
Sbjct: 133 LENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAG 192

Query: 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
              D + F+ +L A ++  L   G ++   + +  G+E +    + LV + ++ G++ +A
Sbjct: 193 CKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAK-AGLELEPRVGTSLVGMYAKCGDISKA 251

Query: 464 LNIVESMPMKPNLALWGTLLLA 485
             I + +P K N+  W TLL+A
Sbjct: 252 QVIFDKLPEK-NVVTW-TLLIA 271


>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
 gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 198/551 (35%), Positives = 306/551 (55%), Gaps = 67/551 (12%)

Query: 16  VSLL-QISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLN-MDQAERLFNQIY 73
           +SLL Q   T + + QI + LT    + +P+  ++++      N  + +  AERLF  + 
Sbjct: 14  ISLLDQKGLTISQLKQIQSHLTVTATLKDPYAAAKIISLHAHSNARSSLFYAERLFLCLQ 73

Query: 74  QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
             +T++ NTM++ + + +   +A S Y +M     L +N+T+ FV++AC  +  L  G  
Sbjct: 74  NKSTFIWNTMMQAFVEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACIDVFNLQMGLC 133

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
            HG+VVK G+    FV NGLI +Y+                                CG 
Sbjct: 134 FHGQVVKFGWESYDFVQNGLIHLYAN-------------------------------CGF 162

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-DLISWNSMIDGYA 252
           M  AR +FD                                 M IK D+++W  +I GY 
Sbjct: 163 MDLARNMFD---------------------------------MSIKRDVVTWTCLISGYL 189

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
             G ++ A++LF+ MPE+N  SW  +I GY + G  KEAL +F +M   G R +  S++G
Sbjct: 190 NSGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNRASIVG 249

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
           A++ACA +GALD G+WIH ++KR  +++D ++ TALIDMY KCG ++ A  +F  M  ++
Sbjct: 250 ALTACAFLGALDQGRWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMDDRD 309

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
           V ++  +I+GL  +   E A+  F +M+ EG+  +++ F+ VL ACS  G+  EG RIF+
Sbjct: 310 VYAFTCLISGLANHDKSEAAIDLFNRMQDEGVVPNEVTFVCVLNACSRMGMVDEGLRIFE 369

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV 492
           SM     IEP+++HY CLVDLL RAG++E+A  +V  MP++P+    G LL ACR H +V
Sbjct: 370 SMSNRYVIEPQIQHYGCLVDLLGRAGKIEEAKQVVREMPLQPDSYTLGALLDACRVHGDV 429

Query: 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
            L E +V+ LV+   D  G++VLLSN+YA A  WE A +IRK M  + I+K  G S IE+
Sbjct: 430 QLGEEMVDSLVQRCLDHGGVHVLLSNMYASADKWEDASKIRKKMEDKNIRKLPGCSSIEV 489

Query: 553 DGNIKEFVSGE 563
           +G + EFV+G+
Sbjct: 490 NGTVCEFVTGD 500


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 180/542 (33%), Positives = 325/542 (59%), Gaps = 11/542 (2%)

Query: 46  TLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM-K 104
           +L++L+  + S  +L +  A  +F    + +    N+M+R +  S+ P++AL  Y  M +
Sbjct: 12  SLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLE 71

Query: 105 RKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG 164
           R   + D +T+P +LK C +L+    G  +HG+VVK     D+++   L+ MY+ CG + 
Sbjct: 72  RSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLK 131

Query: 165 CARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYR 220
            AR +FE    ++ V W  ++ G+++     +A  ++ +M +     D ++ + ++    
Sbjct: 132 SARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACA 191

Query: 221 KKKGDISSARILFEHMPIKDL----ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
           + K D+     L  H+   D+    +  +++++ YAK GDL  A+Q+F+++ +++V++WS
Sbjct: 192 ELK-DLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWS 250

Query: 277 IMIDGYAQHGNPKEALYLFREML-CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
            +I GY ++    EAL LFRE+     +RP+ ++++  ISACAQ+G L+ G+W+H ++ R
Sbjct: 251 ALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITR 310

Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
           ++    + +  +LIDM+ KCG +D A+RIF SM+ K++IS+N M+ G  ++G G EAL  
Sbjct: 311 TQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQ 370

Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           F  M+T  +  D++ F+GVL ACSH+GL  EG ++F  ++   G+  K EHY C+VDLL 
Sbjct: 371 FRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLC 430

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515
           RAG L +A   +  MP++P+ A+WG++L ACR + N+ L E     L++L+  + G+Y+L
Sbjct: 431 RAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYIL 490

Query: 516 LSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELV 575
           LSNIYA   MW    ++R++M ++ I+K  G S + ID     F++G+    +  E+ ++
Sbjct: 491 LSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIM 550

Query: 576 IQ 577
           ++
Sbjct: 551 LR 552



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 186/359 (51%), Gaps = 17/359 (4%)

Query: 138 VVKMGFLCDVFVVNGLIGMYSKCGHMGC--ARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
           +V  GF+     +N LI      G +G   A SVF  +   D+++WN +LR FV      
Sbjct: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60

Query: 196 KAREVFDEMPQK-----DAISWSIMIDG----YRKKKGDISSARILFEHMPIKDLISWNS 246
           +A + + EM ++     D  ++  ++ G       K G +   +++ ++M   DL    +
Sbjct: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVV-KYMLHSDLYIETT 119

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           +++ YA  GDL +A+ LF  M  RN   W+ MI GY ++  P EAL L+++M   G  PD
Sbjct: 120 LLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPD 179

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
            +++   +SACA++  L +G  +H  ++   + +  ++ +AL++MY KCG L  AR++F 
Sbjct: 180 EVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFD 239

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME-TEGIPKDDLIFLGVLIACSHSGLAT 425
            ++ K+V +++ +I G   N    EAL+ F ++     +  +++  L V+ AC+  G   
Sbjct: 240 KLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLE 299

Query: 426 EGYRIFQSMKR-HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
            G  +   + R   G    L   + L+D+ S+ G+++ A  I +SM  K +L  W +++
Sbjct: 300 TGRWVHDYITRTQKGHSVSLN--NSLIDMFSKCGDIDAAKRIFDSMSYK-DLISWNSMV 355


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 197/552 (35%), Positives = 311/552 (56%), Gaps = 73/552 (13%)

Query: 20  QIS--KTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNT 77
           QIS  KTT H+ QI A       I  P   ++LL  LT      +  A + F+QI+ PN 
Sbjct: 21  QISRCKTTRHLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNC 80

Query: 78  YMHNTMIRGYTQSS-------NPQKALSFYVNMKRKGLLVDN-YTYPFVLKACGVLMGLV 129
           +  NT+IR    S        N  +AL ++ +M   GL+  N +T+P VLKAC  L  + 
Sbjct: 81  FSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIE 140

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
           EG ++HG VVK+G + D FV + L+                               R +V
Sbjct: 141 EGKQLHGFVVKLGLVSDEFVRSNLV-------------------------------RVYV 169

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMID 249
            CG M  A  +F          +   ++G                     +++ WN MID
Sbjct: 170 MCGAMKDAHVLF----------YQTRLEG---------------------NVVLWNVMID 198

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
           GY ++GDL A+++LF+ MP ++V SW++MI G AQ+G+ KEA+ +F +M    V P+ ++
Sbjct: 199 GYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVT 258

Query: 310 VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM- 368
           ++  + A +++GA++LGKW+H+F +++ I +D ++ +ALIDMY KCGS+D+A ++F  + 
Sbjct: 259 LVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIR 318

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
            KKN I+++ +I GL M+G   +AL  F +M+  G+   D++++GVL ACSH+GL  EG 
Sbjct: 319 NKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGR 378

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
            I+  M    G+ P++EHY C+VDLL RAG LE+A  ++ +MP+KP+  +   LL AC+ 
Sbjct: 379 SIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKM 438

Query: 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRS 548
           H N+ + E + + L+     D G YV LSN++A  G WE  +++R  M++  I+K+ G S
Sbjct: 439 HGNIEMGERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCS 498

Query: 549 VIEIDGNIKEFV 560
            IE+DG I EF+
Sbjct: 499 WIELDGVIHEFL 510


>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 907

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 197/571 (34%), Positives = 311/571 (54%), Gaps = 55/571 (9%)

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
           D AE++F ++   +   +N+M+ GYTQ+     A+ F+  M  + ++  N      +  C
Sbjct: 159 DDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAERNVVSWNLMVAGFVNNC 218

Query: 123 --GVLMGLVE---------------GTEIHGEVVKMGFLCD------VFVVNGLIGMYSK 159
             G    L E               G   HG++V+   L D      V   N +I  Y +
Sbjct: 219 DLGSAWELFEKIPDPNAVSWVTMLCGFARHGKIVEARKLFDRMPCKNVVSWNAMIAAYVQ 278

Query: 160 CGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP-------------- 205
              +  A  +F+ +  KD VSW  ++ G+V  G++ +AREV+++MP              
Sbjct: 279 DLQIDEAVKLFKETPYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYKDVAAKTALMSGL 338

Query: 206 -----------------QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMI 248
                            ++DAI W+ MI GY  + G +S A  LF  MP+K+ +SWN+MI
Sbjct: 339 IQNGRIDEASQVFSQLNKRDAICWNSMIAGY-CQSGRMSEALNLFRQMPVKNAVSWNTMI 397

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
            GYA+ G++  A ++F  M  RNV SW+ +I G+ Q+G   +AL     M  +G +PD  
Sbjct: 398 SGYAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQS 457

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           +   ++S+CA + AL +GK +H  + +S    D+ V  ALI MY KCG +  A ++F  +
Sbjct: 458 TFACSLSSCANLAALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDI 517

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
              ++IS+N +I+G  +NG+  EA   F QM +EG   D++ F+G+L ACSH+GL  +G 
Sbjct: 518 EGVDLISWNSLISGYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGV 577

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
            +F+ M     IEP  EHYSCLVDLL R G LE+A NIV  M +K N  LWG+LL ACR 
Sbjct: 578 DLFKCMIEGFAIEPLAEHYSCLVDLLGRMGRLEEAFNIVRGMKVKANAGLWGSLLAACRV 637

Query: 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRS 548
           H+N+ L ++    L+EL+  +   Y+ LSN++A+AG WE   R+R +MR+R+  K  G S
Sbjct: 638 HKNMELGKIAALRLLELEPHNASNYITLSNMHAEAGRWEDVERLRVLMRERRAGKLPGCS 697

Query: 549 VIEIDGNIKEFVSGEIFDVQSEELELVIQSF 579
            IE+   I+ FVS +   +++E +++++ + 
Sbjct: 698 WIEVQNQIQNFVSDDPGKLRTESIKIILNTL 728



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 124/457 (27%), Positives = 222/457 (48%), Gaps = 51/457 (11%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV----------- 110
           +D+A+R+F+ +   N   +N+M+  + ++     A   +  M ++ L+            
Sbjct: 33  IDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKMSQRNLVSWNTMIAGYLHN 92

Query: 111 ----------------DNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLI 154
                           DN+++  ++  C    G++E      E+V      D    N +I
Sbjct: 93  NMVEEAHKLFDLMAERDNFSWALMI-TCYTRKGMLEKARELFELVPDKL--DTACWNAMI 149

Query: 155 GMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSI 214
             Y+K G    A  VFE   +KDLVS+N +L G+ + G+MG A + F+ M +++ +SW++
Sbjct: 150 AGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAERNVVSWNL 209

Query: 215 MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
           M+ G+     D+ SA  LFE +P  + +SW +M+ G+A+ G +V A++LF+ MP +NV S
Sbjct: 210 MVAGF-VNNCDLGSAWELFEKIPDPNAVSWVTMLCGFARHGKIVEARKLFDRMPCKNVVS 268

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W+ MI  Y Q     EA+ LF+E   +    D +S    I+   +VG LD  + ++  M 
Sbjct: 269 WNAMIAAYVQDLQIDEAVKLFKETPYK----DCVSWTTMINGYVRVGKLDEAREVYNQMP 324

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
                 D+  +TAL+   ++ G +DEA ++F  + K++ I +N MIAG   +G   EAL 
Sbjct: 325 YK----DVAAKTALMSGLIQNGRIDEASQVFSQLNKRDAICWNSMIAGYCQSGRMSEALN 380

Query: 395 CFAQMETEGIPKDDLIFLGVLIA-CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
            F QM     P  + +    +I+  + +G       IF++M    G+   +   S +   
Sbjct: 381 LFRQM-----PVKNAVSWNTMISGYAQAGEMDRATEIFEAM----GVRNVISWNSLITGF 431

Query: 454 LSRAGELE--QALNIVESMPMKPNLALWGTLLLACRN 488
           L     L+  ++L ++     KP+ + +   L +C N
Sbjct: 432 LQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCAN 468



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 108/431 (25%), Positives = 188/431 (43%), Gaps = 111/431 (25%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           +VF  N  I    K G +  A+ VF     K+  ++N ++  F + G +  AR++FD+M 
Sbjct: 16  NVFNQNKKIIYLGKQGKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKMS 75

Query: 206 QKDAISWSIMIDGY------------------------------RKKKGDISSARILF-- 233
           Q++ +SW+ MI GY                                +KG +  AR LF  
Sbjct: 76  QRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAERDNFSWALMITCYTRKGMLEKARELFEL 135

Query: 234 ------------------------------EHMPIKDLISWNSMIDGYAKIGDLVAAQQL 263
                                         E MP+KDL+S+NSM+ GY + G +  A + 
Sbjct: 136 VPDKLDTACWNAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKF 195

Query: 264 FNEMPERNVFSWSIMID-------------------------------GYAQHGNPKEAL 292
           F  M ERNV SW++M+                                G+A+HG   EA 
Sbjct: 196 FERMAERNVVSWNLMVAGFVNNCDLGSAWELFEKIPDPNAVSWVTMLCGFARHGKIVEAR 255

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            LF  M C+    +V+S    I+A  Q   L + + + +F  +     D +  T +I+ Y
Sbjct: 256 KLFDRMPCK----NVVSWNAMIAAYVQ--DLQIDEAVKLF--KETPYKDCVSWTTMINGY 307

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
           ++ G LDEAR ++  M  K+V +   +++GL  NG  +EA + F+Q+      +D + + 
Sbjct: 308 VRVGKLDEAREVYNQMPYKDVAAKTALMSGLIQNGRIDEASQVFSQLN----KRDAICWN 363

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            ++     SG  +E   +F+ M     +      ++ ++   ++AGE+++A  I E+M +
Sbjct: 364 SMIAGYCQSGRMSEALNLFRQMPVKNAVS-----WNTMISGYAQAGEMDRATEIFEAMGV 418

Query: 473 KPNLALWGTLL 483
           + N+  W +L+
Sbjct: 419 R-NVISWNSLI 428



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 171/380 (45%), Gaps = 54/380 (14%)

Query: 167 RSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDI 226
           RS  E S  K++ + N  +    + G++ +A+ VF  +  K+  +++ M+  +  K G +
Sbjct: 8   RSTLEQS--KNVFNQNKKIIYLGKQGKIDEAKRVFSNVIHKNHATYNSMVTVF-AKNGRV 64

Query: 227 SSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
           S AR LF+ M  ++L+SWN+MI GY     +  A +LF+ M ER+ FSW++MI  Y + G
Sbjct: 65  SDARQLFDKMSQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAERDNFSWALMITCYTRKG 124

Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
             ++A  LF       + PD                LD   W                  
Sbjct: 125 MLEKARELFE------LVPD---------------KLDTACW-----------------N 146

Query: 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK 406
           A+I  Y K G  D+A ++F  M  K+++SYN M+AG   NG    A+K F +M    +  
Sbjct: 147 AMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAERNVVS 206

Query: 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466
            +L+  G +  C         + +F+ +      +P    +  ++   +R G++ +A  +
Sbjct: 207 WNLMVAGFVNNCDLG----SAWELFEKIP-----DPNAVSWVTMLCGFARHGKIVEARKL 257

Query: 467 VESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMW 526
            + MP K N+  W  ++ A    Q++ + E  V+   E    DC  +  + N Y   G  
Sbjct: 258 FDRMPCK-NVVSWNAMIAAYV--QDLQIDE-AVKLFKETPYKDCVSWTTMINGYVRVGKL 313

Query: 527 EHALRIRKMMRKRKIKKETG 546
           + A  +   M  + +  +T 
Sbjct: 314 DEAREVYNQMPYKDVAAKTA 333


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 199/535 (37%), Positives = 292/535 (54%), Gaps = 73/535 (13%)

Query: 62  MDQAERLFNQIY--QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVL 119
           +++A R+FN +   + +    + M+  Y Q+   ++AL  +V MK  G+ VD       L
Sbjct: 218 VEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSAL 277

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
            AC  ++ +  G  +HG  VK+G    V + N LI +YS C                   
Sbjct: 278 SACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSC------------------- 318

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239
                       GE+  AR +FD+  +                               + 
Sbjct: 319 ------------GEIVDARRIFDDGGE-------------------------------LL 335

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           DLISWNSMI GY + G +  A+ LF  MPE++V SWS MI GYAQH    EAL LF+EM 
Sbjct: 336 DLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQ 395

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
             GVRPD  +++ AISAC  +  LDLGKWIH ++ R+++ +++I+ T LIDMYMKCG ++
Sbjct: 396 LHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVE 455

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
            A  +FY+M +K V ++N +I GL MNG  E++L  FA M+  G   +++ F+GVL AC 
Sbjct: 456 NALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACR 515

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           H GL  +G   F SM     IE  ++HY C+VDLL RAG L++A  +++SMPM P++A W
Sbjct: 516 HMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATW 575

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
           G LL ACR H++  + E +   L++L+ D  G +VLLSNIYA  G W + L IR +M + 
Sbjct: 576 GALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQH 635

Query: 540 KIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELE---------LVIQSFVKTTIE 585
            + K  G S+IE +G + EF++G+    Q  ++E         L I+ +V TT E
Sbjct: 636 GVVKTPGCSMIEANGTVHEFLAGDKTHPQINDIEHMLDVVAAKLKIEGYVPTTSE 690



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 158/508 (31%), Positives = 259/508 (50%), Gaps = 72/508 (14%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERLFNQIY 73
           L SLLQ  K   H  Q+L+Q     LIT+P+  S+L+  S  S   +    + R+FN + 
Sbjct: 6   LDSLLQSCKCPRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLR 65

Query: 74  QPNTYMHNTMIRG--YTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
            PNT+  NT++R   Y Q+S P +AL  Y          D+YTYP +L+ C   +   EG
Sbjct: 66  NPNTFTWNTIMRAHLYLQNS-PHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEG 124

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            ++H   V  GF  DV+V N L+ +Y+ CG +G AR VFE S + DLVSWN +L G+V+ 
Sbjct: 125 RQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQA 184

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM--PIKDLISWNSMID 249
           GE+ +A  VF+ MP+++ I+ + MI  +  +KG +  AR +F  +    +D++SW++M+ 
Sbjct: 185 GEVEEAERVFEGMPERNTIASNSMIALF-GRKGCVEKARRIFNGVRGRERDMVSWSAMVS 243

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
            Y +           NEM E                    EAL LF EM   GV  D + 
Sbjct: 244 CYEQ-----------NEMGE--------------------EALVLFVEMKGSGVAVDEVV 272

Query: 310 VMGAISACAQVGALDLGKWIH-----------VFMKRSRIT------------------- 339
           V+ A+SAC++V  +++G+W+H           V +K + I                    
Sbjct: 273 VVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGG 332

Query: 340 --MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFA 397
             +D+I   ++I  Y++CGS+ +A  +FYSM +K+V+S++ MI+G   +    EAL  F 
Sbjct: 333 ELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQ 392

Query: 398 QMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA 457
           +M+  G+  D+   +  + AC+H      G  I   + R+  ++  +   + L+D+  + 
Sbjct: 393 EMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRN-KLQVNVILSTTLIDMYMKC 451

Query: 458 GELEQALNIVESMPMKPNLALWGTLLLA 485
           G +E AL +  +M  K  ++ W  ++L 
Sbjct: 452 GCVENALEVFYAMEEK-GVSTWNAVILG 478



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 114/255 (44%), Gaps = 11/255 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  AE LF  + + +    + MI GY Q     +AL+ +  M+  G+  D       + 
Sbjct: 352 SIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAIS 411

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L  G  IH  + +     +V +   LI MY KCG +  A  VF   E K + +
Sbjct: 412 ACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVST 471

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIM---IDGYRKKKGDISSARILF---- 233
           WN V+ G    G + ++  +F +M +   +   I    + G  +  G ++  R  F    
Sbjct: 472 WNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMI 531

Query: 234 -EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEA 291
            EH    ++  +  M+D   + G L  A++L + MP   +V +W  ++    +H + +  
Sbjct: 532 HEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMG 591

Query: 292 LYLFREMLCQGVRPD 306
             L R+++   ++PD
Sbjct: 592 ERLGRKLI--QLQPD 604


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 191/510 (37%), Positives = 302/510 (59%), Gaps = 17/510 (3%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           NT +R   +     +ALS Y  M R G   + +T+PF LK+C  L   + G++ HG++ K
Sbjct: 18  NTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITK 77

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS--EIKDLVSWNLVLRGFVECGEMGKAR 198
           +G + + FV  GLI MY K   +  AR VFE +    K  V +N ++ G+V   +  +A 
Sbjct: 78  VGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAV 137

Query: 199 EVFDEMPQKDAISWSIMIDGYRK-----------KKGDISSARILFEHMPIKDLISWNSM 247
            +F +M ++     S+ + G                   S+ +  F+     D+   N  
Sbjct: 138 LLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFD----SDVSVVNCF 193

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           I  Y K G +  AQ+LF+EMP + + SW+ M+ GYAQ+G     L L+R M   GV PD 
Sbjct: 194 ITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDP 253

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           ++++G +S+CA +GA  +G  +   ++ S  T +  +  ALI+MY +CG+L +A+ +F  
Sbjct: 254 VTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDG 313

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           M ++ ++S+  +I G GM+G GE A++ F +M   GI  D   F+ VL ACSH+GL  +G
Sbjct: 314 MPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQG 373

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
              F+ MKR+  +EP  EHYSC+VDLL RAG L++A  ++ESMP+KP+ A+WG LL AC+
Sbjct: 374 LEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACK 433

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
            H+NV LAE+  E ++EL+ ++ G YVLLSNIY++A   +  LRIR MM+++K+KK+ G 
Sbjct: 434 IHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGC 493

Query: 548 SVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           S +E+ G +  F+ G+   +QS+E+  V++
Sbjct: 494 SYVELKGRVHPFIVGDRNHLQSDEIYRVLE 523



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 178/353 (50%), Gaps = 14/353 (3%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPN--TYMHNTMIRGY 87
           Q   Q+T    + EPF  + L+ S+    +L +D A ++F + +     T  +N ++ GY
Sbjct: 70  QFHGQITKVGCVFEPFVQTGLI-SMYCKGSL-VDNARKVFEENFHSRKLTVCYNALVSGY 127

Query: 88  TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV 147
             +S   +A+  +  M  +G+ V++ T   ++ AC   + L  G+ +H   +K GF  DV
Sbjct: 128 VSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDV 187

Query: 148 FVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK 207
            VVN  I MY KCG +  A+ +F+   +K L+SWN ++ G+ + G      E++  M   
Sbjct: 188 SVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMN 247

Query: 208 DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW--------NSMIDGYAKIGDLVA 259
                 + + G      ++ +  +  E +  K   S         N++I+ YA+ G+L  
Sbjct: 248 GVHPDPVTLVGVLSSCANLGAQSVGHE-VEFKIQASGFTSNPFLNNALINMYARCGNLTK 306

Query: 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
           AQ +F+ MPER + SW+ +I GY  HG+ + A+ LF+EM+  G+ PD  + +  +SAC+ 
Sbjct: 307 AQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSH 366

Query: 320 VGALDLGKWIHVFMKRS-RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
            G  D G      MKR+ ++       + ++D+  + G L EA+ +  SM  K
Sbjct: 367 AGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIK 419



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 100/211 (47%), Gaps = 4/211 (1%)

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W+  +   A+     +AL L+ +ML  G RP+  +   A+ +CA +    LG   H  + 
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYS--MTKKNVISYNVMIAGLGMNGFGEEA 392
           +     +  VQT LI MY K   +D AR++F     ++K  + YN +++G   N    EA
Sbjct: 77  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
           +  F QM  EG+P + +  LG++ AC        G  +  S  ++ G +  +   +C + 
Sbjct: 137 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKY-GFDSDVSVVNCFIT 195

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLL 483
           +  + G +  A  + + MP+K  L  W  ++
Sbjct: 196 MYMKCGSVNYAQKLFDEMPVK-GLISWNAMV 225


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 192/535 (35%), Positives = 310/535 (57%), Gaps = 14/535 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A ++F+++ + +    N++I GY  +   +K LS +V M   G+ +D  T   V   
Sbjct: 246 VDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAG 305

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C     +  G  +H   VK  F  +    N L+ MYSKCG +  A+ VF     + +VS+
Sbjct: 306 CADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSY 365

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMP 237
             ++ G+   G  G+A ++F+EM ++    D  + + +++   + +      R+   H  
Sbjct: 366 TSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRV---HEW 422

Query: 238 IK------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           IK      D+   N+++D YAK G +  A+ +F+EM  +++ SW+ +I GY+++    EA
Sbjct: 423 IKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEA 482

Query: 292 LYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
           L LF  +L +    PD  +V   + ACA + A D G+ IH ++ R+    D  V  +L+D
Sbjct: 483 LSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVD 542

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           MY KCG+L  AR +F  +T K+++S+ VMIAG GM+GFG+EA+  F QM   GI  D++ 
Sbjct: 543 MYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEIS 602

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
           F+ +L ACSHSGL  EG+R F  M+  C IEP +EHY+C+VD+L+R G L +A   +E+M
Sbjct: 603 FVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENM 662

Query: 471 PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530
           P+ P+  +WG LL  CR H +V LAE V E + EL+ ++ G YVL++NIYA+A  WE   
Sbjct: 663 PIPPDATIWGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVK 722

Query: 531 RIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
           R+RK + +R ++K  G S IEI G +  FV+G+  + ++E++E  ++      IE
Sbjct: 723 RLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEKIEAFLRGVRARMIE 777



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 150/504 (29%), Positives = 247/504 (49%), Gaps = 34/504 (6%)

Query: 10  SLKNPLVSLLQIS-------KTTTHILQILAQLTT--------NDLITEPFTLSQLL--- 51
           +LKN  V LL +S       +T   +LQ+ A   +        N +    F L   L   
Sbjct: 76  NLKNA-VKLLHVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSK 134

Query: 52  MSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVD 111
           ++L   N  ++ +A R+F+Q+        N ++    +S +   ++  +  M   G+ +D
Sbjct: 135 LALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMD 194

Query: 112 NYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE 171
           +YT+  V K+   L  +  G ++HG ++K GF     V N L+  Y K   +  AR VF+
Sbjct: 195 SYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFD 254

Query: 172 GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDIS 227
               +D++SWN ++ G+V  G   K   VF +M     + D  +   +  G    +  IS
Sbjct: 255 EMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRL-IS 313

Query: 228 SARILFEHMPIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
             R +     +K   S      N+++D Y+K GDL +A+ +F EM  R+V S++ MI GY
Sbjct: 314 LGRAV-HCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGY 372

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
           A+ G   EA+ LF EM  +G+ PDV +V   ++ CA+   LD GK +H ++K + +  D+
Sbjct: 373 AREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDI 432

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
            V  AL+DMY KCGS+ EA  +F  M  K++IS+N +I G   N +  EAL  F  +  E
Sbjct: 433 FVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVE 492

Query: 403 G-IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
                D+     VL AC+      +G  I   + R+ G        + LVD+ ++ G L 
Sbjct: 493 KRFSPDERTVACVLPACASLSAFDKGREIHGYIMRN-GYFSDRHVANSLVDMYAKCGALL 551

Query: 462 QALNIVESMPMKPNLALWGTLLLA 485
            A  + + +  K +L  W T+++A
Sbjct: 552 LARLLFDDITSK-DLVSW-TVMIA 573



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 214/413 (51%), Gaps = 17/413 (4%)

Query: 81  NTMIRGYTQSSNPQKALSF-YVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVV 139
           NT +R + +S N + A+   +V+ K     +D  T   VL+ C     L +G E+   + 
Sbjct: 65  NTQLRRFCESGNLKNAVKLLHVSGKWD---IDPRTLCSVLQLCADSKSLKDGKEVDNFIR 121

Query: 140 KMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKARE 199
             GF+ D  + + L  MY+ CG +  A  VF+  +I+  + WN+++    + G+   +  
Sbjct: 122 GNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIG 181

Query: 200 VFDEM----PQKDAISWSIMIDGYRKKK----GDISSARILFEHMPIKDLISWNSMIDGY 251
           +F +M     + D+ ++S +   +   +    G+     IL      ++ +  NS++  Y
Sbjct: 182 LFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVG-NSLVAFY 240

Query: 252 AKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
            K   + +A+++F+EM ER+V SW+ +I+GY  +G  ++ L +F +ML  G+  D+ +++
Sbjct: 241 LKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIV 300

Query: 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
              + CA    + LG+ +H F  ++  + +      L+DMY KCG LD A+ +F  M+ +
Sbjct: 301 SVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGR 360

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           +V+SY  MIAG    G   EA+K F +ME EGI  D      VL  C+ + L  EG R+ 
Sbjct: 361 SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVH 420

Query: 432 QSMKRH-CGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
           + +K +  G +  + +   L+D+ ++ G + +A  +   M +K ++  W T++
Sbjct: 421 EWIKENDMGFDIFVSN--ALMDMYAKCGSMREAELVFSEMRVK-DIISWNTVI 470



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 165/333 (49%), Gaps = 41/333 (12%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D A+ +F ++   +   + +MI GY +     +A+  +  M+ +G+  D YT   VL 
Sbjct: 346 DLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLN 405

Query: 121 ACGVLMGLVEGTEIHGEVVK---MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
            C     L EG  +H E +K   MGF  D+FV N L+ MY+KCG M  A  VF    +KD
Sbjct: 406 CCARNRLLDEGKRVH-EWIKENDMGF--DIFVSNALMDMYAKCGSMREAELVFSEMRVKD 462

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEM-------PQKDAISWSI-------------MID 217
           ++SWN V+ G+ +     +A  +F+ +       P +  ++  +              I 
Sbjct: 463 IISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIH 522

Query: 218 GYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSI 277
           GY  + G  S   +             NS++D YAK G L+ A+ LF+++  +++ SW++
Sbjct: 523 GYIMRNGYFSDRHVA------------NSLVDMYAKCGALLLARLLFDDITSKDLVSWTV 570

Query: 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337
           MI GY  HG  KEA+ LF +M   G+ PD IS +  + AC+  G +D G W    + R  
Sbjct: 571 MIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEG-WRFFNIMRHE 629

Query: 338 ITMDMIVQ--TALIDMYMKCGSLDEARRIFYSM 368
             ++  V+    ++DM  + G+L +A R   +M
Sbjct: 630 CKIEPTVEHYACIVDMLARTGNLSKAYRFIENM 662


>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
          Length = 526

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 190/520 (36%), Positives = 296/520 (56%), Gaps = 43/520 (8%)

Query: 31  ILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           I AQ+    L    + LS+L+   + SP+   +  A  +F  I +PN  + NTM RG+  
Sbjct: 6   IHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 65

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
           SS+P  AL  YV M   GLL + YT+PF+LK+C       EG +IHG V+K+G+  D++V
Sbjct: 66  SSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYV 125

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA 209
              LI MY + G +  AR VF+ S  +D+VS+  +++G+   G +  A+++FDE+P KD 
Sbjct: 126 HTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDV 185

Query: 210 ISWSIMIDGYRKKKGDISSARILFE---------------------------------HM 236
           +SW+ MI GY  + G+   A  LF+                                 H+
Sbjct: 186 VSWNAMISGY-AETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHL 244

Query: 237 PIKD------LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
            I D      L   N++ID Y+K G++  A  LF  +  ++V SW+ +I GY      KE
Sbjct: 245 WIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKE 304

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR--SRITMDMIVQTAL 348
           AL LF+EML  G  P+ ++++  + ACA +GA+D+G+WIHV++ +    +T    + T+L
Sbjct: 305 ALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSL 364

Query: 349 IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD 408
           IDMY KCG ++ A+++F SM  +++ S+N MI G  M+G    A   F++M   GI  DD
Sbjct: 365 IDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDD 424

Query: 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468
           + F+G+L ACSHSG+   G  IF+SM +   I PKLEHY C++DLL   G  ++A  ++ 
Sbjct: 425 ITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIR 484

Query: 469 SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508
           +MPM+P+  +W +LL AC+ H NV L E   + L++++ +
Sbjct: 485 TMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPE 524


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 192/536 (35%), Positives = 308/536 (57%), Gaps = 26/536 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D+A  +F+++   N+   N ++  Y +S   ++A   + +              + L 
Sbjct: 141 HVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKS-----------DWELI 189

Query: 121 ACGVLMGLVEGTEIHGEVVKMGF----LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK 176
           +C  LMG      + G+  ++ F    + D+   N +I  Y++ G +  AR +FE S ++
Sbjct: 190 SCNCLMGGYVKRNMLGDARQL-FDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVR 248

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           D+ +W  ++  +V+ G + +AR VFDEMPQK  +S+++MI GY + K  +   R LFE M
Sbjct: 249 DVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYK-RMDMGRELFEEM 307

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
           P  ++ SWN MI GY + GDL  A+ LF+ MP+R+  SW+ +I GYAQ+G  +EA+ +  
Sbjct: 308 PFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLV 367

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
           EM   G   +  +   A+SACA + AL+LGK +H  + R+      +V  AL+ MY KCG
Sbjct: 368 EMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCG 427

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
            +DEA  +F  +  K+++S+N M+AG   +GFG +AL  F  M T G+  D++  +GVL 
Sbjct: 428 CIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLS 487

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
           ACSH+GL   G   F SM +  GI P  +HY+C++DLL RAG LE+A N++ +MP +P+ 
Sbjct: 488 ACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDA 547

Query: 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
           A WG LL A R H N+ L E   E + +++  + G+YVLLSN+YA +G W    ++R  M
Sbjct: 548 ATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKM 607

Query: 537 RKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQS-------EELELVI--QSFVKTT 583
           R+  ++K  G S +E+   I  F  G+ F  +        EEL+L +  + +V +T
Sbjct: 608 RQIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSST 663



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 139/513 (27%), Positives = 242/513 (47%), Gaps = 30/513 (5%)

Query: 7   AKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAE 66
            KF+L+    S+  + + T +               +P T+       T     + D A 
Sbjct: 3   GKFNLRQLHSSIFHVQRPTNY---------PKPHFEDPHTVKCTKAISTHMRNGHCDLAL 53

Query: 67  RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
            +F+ +   N+  +N MI GY +++    A   +  M  K L    +++  +L       
Sbjct: 54  CVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDL----FSWNLMLTGYARNR 109

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
            L +   +   + +     DV   N ++  Y + GH+  AR VF+    K+ +SWN +L 
Sbjct: 110 RLRDARMLFDSMPEK----DVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLA 165

Query: 187 GFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNS 246
            +V  G + +AR +F+     + IS + ++ GY K+   +  AR LF+ +P++DLISWN+
Sbjct: 166 AYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNM-LGDARQLFDQIPVRDLISWNT 224

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           MI GYA+ GDL  A++LF E P R+VF+W+ M+  Y Q G   EA  +F EM  +  R  
Sbjct: 225 MISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQK--REM 282

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
             +VM  I+  AQ   +D+G+ +   M    I    I    +I  Y + G L +AR +F 
Sbjct: 283 SYNVM--IAGYAQYKRMDMGRELFEEMPFPNIGSWNI----MISGYCQNGDLAQARNLFD 336

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            M +++ +S+  +IAG   NG  EEA+    +M+ +G   +   F   L AC+       
Sbjct: 337 MMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALEL 396

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G ++   + R  G E      + LV +  + G +++A ++ + +  K ++  W T+L   
Sbjct: 397 GKQVHGQVVR-TGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHK-DIVSWNTMLAGY 454

Query: 487 RNHQNVTLAEVVVEGLVE--LKADDCGLYVLLS 517
             H     A  V E ++   +K D+  +  +LS
Sbjct: 455 ARHGFGRQALTVFESMITAGVKPDEITMVGVLS 487



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 170/340 (50%), Gaps = 24/340 (7%)

Query: 200 VFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVA 259
           VFD MP ++++S++ MI GY +     S AR LF+ MP KDL SWN M+ GYA+   L  
Sbjct: 55  VFDAMPLRNSVSYNAMISGYLRN-AKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRD 113

Query: 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
           A+ LF+ MPE++V SW+ M+ GY + G+  EA  +F  M       + IS  G ++A  +
Sbjct: 114 ARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRM----PHKNSISWNGLLAAYVR 169

Query: 320 VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVM 379
            G L+  + +      S+   ++I    L+  Y+K   L +AR++F  +  +++IS+N M
Sbjct: 170 SGRLEEARRLF----ESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTM 225

Query: 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439
           I+G   +G   +A + F     E   +D   +  ++ A    G+  E  R+F  M     
Sbjct: 226 ISGYAQDGDLSQARRLF----EESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMP---- 277

Query: 440 IEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA-CRNHQNVTLAEVV 498
            + +   Y+ ++   ++   ++    + E MP  PN+  W  ++   C   QN  LA+  
Sbjct: 278 -QKREMSYNVMIAGYAQYKRMDMGRELFEEMPF-PNIGSWNIMISGYC---QNGDLAQAR 332

Query: 499 VEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
               +  + D      +++  YA  G++E A+ +   M++
Sbjct: 333 NLFDMMPQRDSVSWAAIIAG-YAQNGLYEEAMNMLVEMKR 371


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 168/392 (42%), Positives = 255/392 (65%), Gaps = 1/392 (0%)

Query: 186 RGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWN 245
           R +   G +  +  +F          W+ +I G+   +GD+ SA+ LF+ MP K L+S  
Sbjct: 70  RSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGH-ALRGDVVSAQQLFDTMPEKSLVSLT 128

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           +M+  YAK G+L AA+ LF+ M ER+   W++MIDGY Q+G P EAL LFR ML    +P
Sbjct: 129 AMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKP 188

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           + ++V+  +SAC Q+GAL+ G+W+H +++ + I  ++ V TAL+DMY KCGSL++AR +F
Sbjct: 189 NEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVF 248

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
             +  K+V+++N MI G  M+GF +EAL+ F  M   G+   ++ F+G+L AC HSG  T
Sbjct: 249 DKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVT 308

Query: 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
           EG+ IF  MK   GIEPK+EHY C+V+LL RAG +EQA  +V++M ++P+  LWGTLL A
Sbjct: 309 EGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGA 368

Query: 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
           CR H  + L E +VE LV+    + G Y+LLSNIYA  G W+   R+R MM+   +KKE 
Sbjct: 369 CRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEP 428

Query: 546 GRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           G S IE++  + EF++G +   + +E+ ++++
Sbjct: 429 GCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLE 460



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 143/325 (44%), Gaps = 73/325 (22%)

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
           VF    +I  ++  G +  A+ +F+    K LVS   +L  + + GE+  AR +FD M +
Sbjct: 93  VFFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEE 152

Query: 207 KDAISWSIMIDGYRKKKGDISSARILFEHM----------PIKDLIS------------W 244
           +D + W++MIDGY  + G  + A +LF  M           +  ++S            W
Sbjct: 153 RDGVCWNVMIDGY-TQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRW 211

Query: 245 -----------------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN 287
                             +++D Y+K G L  A+ +F+++ +++V +W+ MI GYA HG 
Sbjct: 212 VHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGF 271

Query: 288 PKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA 347
            +EAL LF+ M   G+ P  I+ +G +SAC   G      W+                T 
Sbjct: 272 SQEALQLFKSMCRMGLHPTNITFIGILSACGHSG------WV----------------TE 309

Query: 348 LIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407
             D++ K    DE     Y +  K +  Y  M+  LG  G  E+A +    M  E    D
Sbjct: 310 GWDIFNKMK--DE-----YGIEPK-IEHYGCMVNLLGRAGHVEQAYELVKNMNIE---PD 358

Query: 408 DLIFLGVLIACSHSGLATEGYRIFQ 432
            +++  +L AC   G    G +I +
Sbjct: 359 PVLWGTLLGACRLHGKIALGEKIVE 383



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 74/143 (51%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A  LF+ + + +    N MI GYTQ+  P +AL  +  M +     +  T   VL A
Sbjct: 140 LDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSA 199

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           CG L  L  G  +H  +   G   +V V   L+ MYSKCG +  AR VF+  + KD+V+W
Sbjct: 200 CGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAW 259

Query: 182 NLVLRGFVECGEMGKAREVFDEM 204
           N ++ G+   G   +A ++F  M
Sbjct: 260 NSMIVGYAMHGFSQEALQLFKSM 282



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A  +F++I   +    N+MI GY      Q+AL  + +M R GL   N T+  +L 
Sbjct: 240 SLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILS 299

Query: 121 ACGVLMGLVEGTEIHGEVV-KMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK-DL 178
           ACG    + EG +I  ++  + G    +     ++ +  + GH+  A  + +   I+ D 
Sbjct: 300 ACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDP 359

Query: 179 VSWNLVL 185
           V W  +L
Sbjct: 360 VLWGTLL 366


>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Glycine max]
          Length = 548

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 191/571 (33%), Positives = 316/571 (55%), Gaps = 66/571 (11%)

Query: 3   TLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNM 62
           +LA    ++ + L+SLL   K+   + Q+ A + +  L  +   +S++L      N+ ++
Sbjct: 5   SLACKITNISHNLLSLLDKCKSILELKQLHAVVISCGLSQDDPFISKILCFSALSNSGDI 64

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
           + + R+F+Q+  P  +  NT+IRGY+ S NP ++LS ++ M R G+  D  TYPF++KA 
Sbjct: 65  NYSYRVFSQLSSPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLGVAPDYLTYPFLVKAS 124

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
             L+    G  +H  ++K G   D F+ N LI MY+                        
Sbjct: 125 ARLLNQETGVSVHAHIIKTGHESDRFIQNSLIHMYAA----------------------- 161

Query: 183 LVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLI 242
                   CG    A++VFD + QK+                                ++
Sbjct: 162 --------CGNSMWAQKVFDSIQQKN--------------------------------VV 181

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
           SWNSM+DGYAK G++V AQ+ F  M E++V SWS +IDGY + G   EA+ +F +M   G
Sbjct: 182 SWNSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEYSEAMAIFEKMQSAG 241

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
            + + ++++    ACA +GAL+ G+ I+ ++  + + + +++QT+L+DMY KCG+++EA 
Sbjct: 242 PKANEVTMVSVSCACAHMGALEKGRMIYKYIVDNGLPLTLVLQTSLVDMYAKCGAIEEAL 301

Query: 363 RIFYSMTKK--NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
            IF  ++K   +V+ +N +I GL  +G  EE+LK F +M+  GI  D++ +L +L AC+H
Sbjct: 302 LIFRRVSKSQTDVLIWNAVIGGLATHGLVEESLKLFKEMQIVGICPDEVTYLCLLAACAH 361

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
            GL  E +  F+S+ + CG+ P  EHY+C+VD+L+RAG+L  A   +  MP +P  ++ G
Sbjct: 362 GGLVKEAWFFFESLSK-CGMTPTSEHYACMVDVLARAGQLTTAYQFICQMPTEPTASMLG 420

Query: 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540
            LL  C NH+N+ LAE+V   L+EL+ +  G Y+ LSN+YA    W+ A  +R+ M +R 
Sbjct: 421 ALLSGCINHRNLALAEIVGRKLIELEPNHDGRYIGLSNMYAVDKRWDDARSMREAMERRG 480

Query: 541 IKKETGRSVIEIDGNIKEFVSGEIFDVQSEE 571
           +KK  G S +EI G +  F++ +     SEE
Sbjct: 481 VKKSPGFSFVEISGVLHRFIAHDKTHPDSEE 511


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 196/532 (36%), Positives = 305/532 (57%), Gaps = 20/532 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ A  LF+++   +    N+MI G T +   +  L F++ M   G+ VD+ T   VL A
Sbjct: 209 VESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVA 268

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  +  L  G  +H   VK GF   V   N L+ MYSKCG++  A  VF       +VSW
Sbjct: 269 CANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSW 328

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK-------------DAISWSIMIDGYRKKKGDISS 228
             ++   V  G   +A  +FDEM  K              A + S  +D  R+    I  
Sbjct: 329 TSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKK 388

Query: 229 ARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNP 288
              +  ++P+      N++++ YAK G +  A  +F+++P +N+ SW+ MI GY+Q+  P
Sbjct: 389 NN-MGSNLPVS-----NALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLP 442

Query: 289 KEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTAL 348
            EAL LF +M  Q ++PD +++   + ACA + AL+ G+ IH  + R     D+ V  AL
Sbjct: 443 NEALQLFLDMQKQ-LKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACAL 501

Query: 349 IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD 408
           +DMY+KCG L  A+++F  + KK++I + VMIAG GM+GFG+EA+  F +M   GI  ++
Sbjct: 502 VDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEE 561

Query: 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468
             F  +L AC+HSGL  EG+++F SMK  C IEPKLEHY+C+VDLL R+G L +A   +E
Sbjct: 562 SSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIE 621

Query: 469 SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528
           +MP+KP+ A+WG LL  CR H +V LAE V E + EL+ ++   YVLL+N+YA+A  WE 
Sbjct: 622 TMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIFELEPENTRYYVLLANVYAEAEKWEE 681

Query: 529 ALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFV 580
             +I++ + K  +K + G S IE+ G    F +G+    Q++ ++ +++   
Sbjct: 682 VKKIQRRISKGGLKNDQGCSWIEVQGKFNIFFAGDTSHPQAKMIDSLLRKLT 733



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 131/439 (29%), Positives = 223/439 (50%), Gaps = 22/439 (5%)

Query: 58  NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF 117
           N  ++ +  R+F+ I     ++ N ++  Y +  N ++++  +  M+  G+  D+YT+  
Sbjct: 104 NCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTC 163

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           VLK       + E   +HG V+K+GF     VVN LI  Y KCG +  AR +F+    +D
Sbjct: 164 VLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRD 223

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR--------KKKGDISSA 229
           +VSWN ++ G    G      E F +M     ++  + +D              G+++  
Sbjct: 224 VVSWNSMISGCTMNGFSRNGLEFFIQM-----LNLGVDVDSATLVNVLVACANVGNLTLG 278

Query: 230 RILFEHMPIKDLISW-----NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQ 284
           R L  +  +K   S      N+++D Y+K G+L  A ++F +M E  + SW+ +I  + +
Sbjct: 279 RALHAY-GVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVR 337

Query: 285 HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIV 344
            G   EA+ LF EM  +G+RPD+ +V   + ACA   +LD G+ +H  +K++ +  ++ V
Sbjct: 338 EGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPV 397

Query: 345 QTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGI 404
             AL++MY KCGS++EA  IF  +  KN++S+N MI G   N    EAL+ F  M+ +  
Sbjct: 398 SNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQLK 457

Query: 405 PKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL 464
           P DD+    VL AC+      +G  I   + R  G    L     LVD+  + G L  A 
Sbjct: 458 P-DDVTMACVLPACAGLAALEKGREIHGHILRK-GYFSDLHVACALVDMYVKCGLLVLAQ 515

Query: 465 NIVESMPMKPNLALWGTLL 483
            + + +P K ++ LW  ++
Sbjct: 516 QLFDMIP-KKDMILWTVMI 533



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 207/411 (50%), Gaps = 13/411 (3%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N  I  + +  + + A+      +R  L ++  TY  VL+ C  L  L +G  +H  +  
Sbjct: 28  NAKICKFCEMGDLRNAMKLLSRSQRSELELN--TYCSVLQLCAELKSLEDGKRVHSIISS 85

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
            G   D  +   L+ MY  CG +   R +F+G     +  WNL++  + + G   ++  +
Sbjct: 86  NGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGL 145

Query: 201 FDEMPQ----KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWN----SMIDGYA 252
           F++M +     D+ +++ ++ G+      +   + +  ++      S+N    S+I  Y 
Sbjct: 146 FEKMQELGIRGDSYTFTCVLKGF-AASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYF 204

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
           K G++ +A+ LF+E+ +R+V SW+ MI G   +G  +  L  F +ML  GV  D  +++ 
Sbjct: 205 KCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVN 264

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
            + ACA VG L LG+ +H +  ++  +  ++    L+DMY KCG+L+ A  +F  M +  
Sbjct: 265 VLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETT 324

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
           ++S+  +IA     G   EA+  F +M+++G+  D      V+ AC+ S    +G  +  
Sbjct: 325 IVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHN 384

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
            +K++  +   L   + L+++ ++ G +E+A  I   +P+K N+  W T++
Sbjct: 385 HIKKN-NMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVK-NIVSWNTMI 433


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 194/543 (35%), Positives = 308/543 (56%), Gaps = 38/543 (6%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D A  +F+ +   +    N MI G  Q+    +A + ++ M+++G + D+ TY  +L 
Sbjct: 284 SIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLN 343

Query: 121 ACGVLMGLVEGT-EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
              V  G  E   E+H   V++G + D+ V +  + MY +CG +  A+ +F+   ++++ 
Sbjct: 344 T-HVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVT 402

Query: 180 SWNLVLRGFVE--CGEMGKAREVFDEMPQK-------------------DAISWSIMIDG 218
           +WN ++ G  +  CG   +A  +F +M ++                   +A+ W   +  
Sbjct: 403 TWNAMIGGVAQQKCGR--EALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHS 460

Query: 219 YRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM 278
           Y    G             + DL   N+++  YAK G+ + A+Q+F++M ERNV +W++M
Sbjct: 461 YAIDAG-------------LVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVM 507

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338
           I G AQHG   EA  LF +ML +G+ PD  + +  +SACA  GAL+  K +H     + +
Sbjct: 508 ISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGL 567

Query: 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
             D+ V  AL+ MY KCGS+D+ARR+F  M +++V S+ VMI GL  +G G +AL  F +
Sbjct: 568 VSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVK 627

Query: 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458
           M+ EG   +   F+ VL ACSH+GL  EG R F S+ +  GIEP +EHY+C+VDLL RAG
Sbjct: 628 MKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAG 687

Query: 459 ELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSN 518
           +LE+A + + +MP++P  A WG LL AC  + N+ +AE   +  ++LK      YVLLSN
Sbjct: 688 QLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSN 747

Query: 519 IYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQS 578
           IYA  G WE  L +R MM++R I+KE GRS IE+D  I  FV G+    +S+E+   ++ 
Sbjct: 748 IYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKD 807

Query: 579 FVK 581
            +K
Sbjct: 808 LIK 810



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/413 (30%), Positives = 213/413 (51%), Gaps = 17/413 (4%)

Query: 83  MIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMG 142
           MI GY +    + A+  Y  M+R+G   +  TY  +LKAC   + L  G +IH  +++ G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 143 FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFD 202
           F  DV V   L+ MY KCG +  A+ +F+    ++++SW +++ G    G   +A   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 203 EMPQKDAISWS---IMIDGYRKKKGDISSARILFEHMPIK----DLISWNSMIDGYAKIG 255
           +M ++  I  S   + I       G +   + +  H        DL   N+++  YAK G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
            +  A+ +F+ M ER++FSW++MI G AQHG  +EA  LF +M   G  P++ + +  ++
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240

Query: 316 ACA--QVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNV 373
           A A    GAL+  K +H    ++    D+ V  ALI MY KCGS+D+AR +F  M  ++V
Sbjct: 241 ASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDV 300

Query: 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433
           IS+N MI GL  NG G EA   F +M+ EG   D   +L +L    ++ ++T  +   + 
Sbjct: 301 ISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLL----NTHVSTGAWEWVKE 356

Query: 434 MKRHC---GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
           + +H    G+   L   S  V +  R G ++ A  I + + ++ N+  W  ++
Sbjct: 357 VHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVR-NVTTWNAMI 408



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 124/438 (28%), Positives = 212/438 (48%), Gaps = 12/438 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D A+ +F+++ + N      MI G       Q+A   ++ M+R+G + ++YTY  +L 
Sbjct: 80  SIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILN 139

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           A      L    E+H   V  G   D+ V N L+ MY+K G +  AR VF+G   +D+ S
Sbjct: 140 ANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFS 199

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAIS-----WSIMIDGYRKKKGDISSARILFEH 235
           W +++ G  + G   +A  +F +M +   +       SI+        G +   + + +H
Sbjct: 200 WTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKH 259

Query: 236 MP----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
                 I DL   N++I  YAK G +  A+ +F+ M +R+V SW+ MI G AQ+G   EA
Sbjct: 260 AGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEA 319

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
             +F +M  +G  PD  + +  ++     GA +  K +H       +  D+ V +A + M
Sbjct: 320 FTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHM 379

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y++CGS+D+A+ IF  +  +NV ++N MI G+     G EAL  F QM  EG   D   F
Sbjct: 380 YIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTF 439

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           + +L A +    A E  +   S     G+   L   + LV + ++ G    A  + + M 
Sbjct: 440 VNILSA-NVGEEALEWVKEVHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDM- 496

Query: 472 MKPNLALWGTLLLACRNH 489
           ++ N+  W  ++     H
Sbjct: 497 VERNVTTWTVMISGLAQH 514



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 145/295 (49%), Gaps = 9/295 (3%)

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
            ++++ Y K G +  AQ +F++M ERNV SW++MI G A +G  +EA + F +M  +G  
Sbjct: 69  TALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFI 128

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           P+  + +  ++A A  GAL+  K +H     + + +D+ V  AL+ MY K GS+D+AR +
Sbjct: 129 PNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVV 188

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS-HSGL 423
           F  M ++++ S+ VMI GL  +G G+EA   F QME  G   +   +L +L A +  S  
Sbjct: 189 FDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTG 248

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP----NLALW 479
           A E  +         G    L   + L+ + ++ G ++ A  + + M  +     N  + 
Sbjct: 249 ALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIG 308

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           G     C +       ++  EG V     D   Y+ L N +   G WE    + K
Sbjct: 309 GLAQNGCGHEAFTIFLKMQQEGFVP----DSTTYLSLLNTHVSTGAWEWVKEVHK 359



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 122/212 (57%), Gaps = 2/212 (0%)

Query: 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337
           MI GYA++G  ++A+ ++ +M  +G +P+ I+ +  + AC    +L  GK IH  + +S 
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFA 397
              D+ V+TAL++MY+KCGS+D+A+ IF  M ++NVIS+ VMI GL   G G+EA   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 398 QMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA 457
           QM+ EG   +   ++ +L A + +G A E  +   S   + G+   L   + LV + +++
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAG-ALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKS 179

Query: 458 GELEQALNIVESMPMKPNLALWGTLLLACRNH 489
           G ++ A  + + M ++ ++  W  ++     H
Sbjct: 180 GSIDDARVVFDGM-VERDIFSWTVMIGGLAQH 210


>gi|225456719|ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 529

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 194/535 (36%), Positives = 314/535 (58%), Gaps = 22/535 (4%)

Query: 35  LTTNDLITEPFTLSQLLMSLTS---PNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSS 91
           + TN  +  P   S+L++S  S   P T ++  A R+ +QI   +TY  NT+IRGY + +
Sbjct: 1   MITNGHLHNPTLASKLVVSFASITLPGTTSV--ARRIADQIDGLDTYTWNTIIRGYLEGN 58

Query: 92  NPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVN 151
           +P++A+  Y ++++KGL VD YT  FV+KACG+   ++EG +IHG++ K+GF  +V +  
Sbjct: 59  DPEEAILVYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQT 118

Query: 152 GLIGMYS----KCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK 207
            L+ +Y      CG     + +F+    +DLV WN ++  +       K REV  +M + 
Sbjct: 119 ALLNLYGLFDEDCG----LQQIFDEMPQRDLVMWNALIAAYAHGNCPYKVREVSYDMVRS 174

Query: 208 D-------AISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAA 260
           +       A+S   +    R  +   +    + +++   D+   N++I  Y+K G +  A
Sbjct: 175 NVKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEFDVFVHNALIVVYSKCGSIRDA 234

Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
            Q+F  MP RNV SW+ +I+GY+ +  P EAL  F++M  + +RPD I+V+G +  C+++
Sbjct: 235 VQVFQLMPMRNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGVVCMCSKL 294

Query: 321 GALDLGKWIHVFM-KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVM 379
            + +LG+WI  ++ K   +     +  AL+DM+ KCG+++ A +IF  M +K ++S+ +M
Sbjct: 295 RSFELGEWISQYVVKIGLLKESPAIANALMDMHAKCGNINRACQIFDGMEEKTIVSWTIM 354

Query: 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439
           I GL M+G G  AL  F QM+ EG   D L+FL +L ACSH+GL  EG+R F SM+    
Sbjct: 355 IQGLAMHGHGLSALVRFCQMQREGFKPDSLVFLSLLSACSHAGLVDEGWRCFSSMEADYH 414

Query: 440 IEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVV 499
           I P +EHY C+VD+L RAG +++A   V++MP+KP++ +W TLL AC    N++LA  V+
Sbjct: 415 ISPWMEHYGCMVDILCRAGLVDEAFKFVQNMPIKPDMIVWRTLLGACHTQGNISLANQVM 474

Query: 500 EGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI-KKETGRSVIEID 553
             L EL       YVLLSN++A    W++   +RK M  R + K++ G S IE D
Sbjct: 475 NYLCELGPKKSEDYVLLSNLFASNAEWDNVGEVRKEMGDRGVTKQDPGCSFIEAD 529


>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 174/417 (41%), Positives = 267/417 (64%), Gaps = 2/417 (0%)

Query: 167 RSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDI 226
           R +F     +++V+W  ++ G++   ++  AR +FD  P++D + W+IM+ GY  + GD+
Sbjct: 33  REIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGY-IEGGDM 91

Query: 227 SSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
             AR LF  MP +D++ WN+++ GYA  G++ A + LF EMPERN+FSW+ +I GYA +G
Sbjct: 92  VEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNG 151

Query: 287 NPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
              E L  F+ ML +  V P+  +++  +SACA++GALDLGKW+HV+ + S +  ++ V 
Sbjct: 152 LFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVG 211

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
            AL+DMY KCG ++ A  +F  M  K++IS+N +I GL M+  G +AL  F QM+  G  
Sbjct: 212 NALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQK 271

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
            D + F+G+L AC+H GL  +G+  FQSM     I P++EHY C+VD+L+RAG LEQA+ 
Sbjct: 272 PDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMA 331

Query: 466 IVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM 525
            V  MP++ +  +W  LL ACR ++NV LAE+ ++ L+EL+  +   YV+LSNIY DAG 
Sbjct: 332 FVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGR 391

Query: 526 WEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKT 582
           WE   R++  MR    KK  G S+IE++  + EF S +    Q EE+  V++  VK 
Sbjct: 392 WEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKV 448



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 139/291 (47%), Gaps = 46/291 (15%)

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAK 253
           M  AR++FD++P  +   W+ M  GY + +    S R +F  M  +++++W SMI+GY  
Sbjct: 1   MTYARQLFDQIPDPNIALWNSMFRGYAQSE----SYREIFCEMFERNVVAWTSMINGYIL 56

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313
             DLV+A++LF+  PER+V  W+IM+ GY + G+  EA  LF EM      P+       
Sbjct: 57  SADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEM------PN------- 103

Query: 314 ISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNV 373
                                      D++    ++  Y   G+++    +F  M ++N+
Sbjct: 104 --------------------------RDVMFWNTVLKGYATNGNVEALEGLFEEMPERNI 137

Query: 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
            S+N +I G   NG   E L  F +M +E  +P +D   + VL AC+  G    G +   
Sbjct: 138 FSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLG-KWVH 196

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
                 G++  +   + L+D+ ++ G +E A+++   M  K +L  W TL+
Sbjct: 197 VYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTK-DLISWNTLI 246



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 97/218 (44%), Gaps = 11/218 (5%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKAL-SFYVNMKRKGLLVDNYTYPFVL 119
           N++  E LF ++ + N +  N +I GY  +    + L SF   +    +  ++ T   VL
Sbjct: 121 NVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVL 180

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
            AC  L  L  G  +H      G   +V+V N L+ MY+KCG +  A SVF G + KDL+
Sbjct: 181 SACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLI 240

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEH 235
           SWN ++ G         A  +F +M     + D I++ I I       G +      F+ 
Sbjct: 241 SWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITF-IGILCACTHMGLVEDGFAYFQS 299

Query: 236 MPIKDLI-----SWNSMIDGYAKIGDLVAAQQLFNEMP 268
           M    LI      +  M+D  A+ G L  A     +MP
Sbjct: 300 MADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMP 337


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 190/554 (34%), Positives = 299/554 (53%), Gaps = 65/554 (11%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           QI AQ+    +ITEP   ++ L   TSP+  ++  A+R+FN I  PNT+M N +IR Y+ 
Sbjct: 6   QIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAIIRAYSN 65

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
           S  P+ A   Y  M    +  ++YT+PF+L+AC  L+ + E  ++HG V+K+GF      
Sbjct: 66  SDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGF------ 119

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA 209
                                 GS   D+ + N +L  +  CGE                
Sbjct: 120 ----------------------GS---DVFALNALLHVYALCGE---------------- 138

Query: 210 ISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269
                           I  AR LF+++P +D +SWN MIDGY K GD+  A  +F +MP 
Sbjct: 139 ----------------IHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPL 182

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329
           +NV SW+ +I G  + G   EAL L  EM   G   D +++   ++ACA +GALD G+W+
Sbjct: 183 KNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWL 242

Query: 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM--TKKNVISYNVMIAGLGMNG 387
           H ++  + + +D ++  AL++MY+KCG ++EA  +F  +   +K+V  +  MI G  ++G
Sbjct: 243 HFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHG 302

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
            G EAL+ F +M  EGI  + + F  VL ACS+ GL  EG  +F+SMK    + P +EHY
Sbjct: 303 RGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIEHY 362

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
            C+VDLL R+G L++A  +++ MPMKP+  +WG LL AC  H++  L   V   LVE+ +
Sbjct: 363 GCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQVGAHLVEVDS 422

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDV 567
           D  G Y+ L+ I A  G W+ A  +R  M+   +    G+S + ++G + EF++G     
Sbjct: 423 DHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHEFLAGHQDHP 482

Query: 568 QSEELELVIQSFVK 581
           Q E+++L ++   +
Sbjct: 483 QMEQIQLKLKQIAE 496


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 192/535 (35%), Positives = 299/535 (55%), Gaps = 26/535 (4%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK------GLLVDNYTY 115
           +  A RLF+ + + +    N+++ GY Q+    +A   + NM  K      GLL      
Sbjct: 127 LGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHN 186

Query: 116 PFVLKACGVLMGLVEGTEIHGEVVKMGFLC-----------------DVFVVNGLIGMYS 158
             + +AC +     +   I    +  GF+                  D    N +I  Y+
Sbjct: 187 GRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYA 246

Query: 159 KCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDG 218
           + G +  AR +F+ S  +D+ +W  ++ G+V+ G + +A+  FDEMP+K+ +S++ MI G
Sbjct: 247 QGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAG 306

Query: 219 Y-RKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSI 277
           Y + KK DI  AR LFE MP +++ SWN+MI GY +IGD+  A++ F+ MP+R+  SW+ 
Sbjct: 307 YVQTKKMDI--ARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAA 364

Query: 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337
           +I GYAQ G+ +EAL +F E+   G   +  +   A+S CA + AL+LGK IH    +  
Sbjct: 365 IIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMG 424

Query: 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFA 397
                 V  AL+ MY KCGS+DEA   F  + +K+V+S+N M+AG   +GFG +AL  F 
Sbjct: 425 YGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFE 484

Query: 398 QMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA 457
            M+T G+  D++  +GVL ACSH+GL   G   F SM +  G+ P  +HY+C++DLL RA
Sbjct: 485 SMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRA 544

Query: 458 GELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517
           G LE+A +++ +MP +P  A WG LL A R H N  L E   E + +++  + G+YVLLS
Sbjct: 545 GRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLS 604

Query: 518 NIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           N+YA +G W  A ++R  MR   ++K  G S +E+   I  F  G+    + E +
Sbjct: 605 NLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERI 659



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 130/461 (28%), Positives = 226/461 (49%), Gaps = 29/461 (6%)

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
           D A  +FN + + ++  +N MI GY ++S    A + +  M  + L   N          
Sbjct: 66  DSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNV--------- 116

Query: 123 GVLMGLVEGTEIHGEVVKMGFLC---DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
            +L G V    + G+  ++  L    DV   N L+  Y++ G++  AR VF+    K+ +
Sbjct: 117 -MLTGYVRNCRL-GDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSI 174

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239
           SWN +L  +V  G + +A  +F+     D ISW+ ++ G+ +KK  +  AR LF+ MP++
Sbjct: 175 SWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKK-KLGDARWLFDKMPVR 233

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           D ISWN+MI GYA+ G L  A++LF+E P R+VF+W+ M+ GY Q+G   EA   F EM 
Sbjct: 234 DAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM- 292

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
                 + +S    I+   Q   +D+ + +   M    I+        +I  Y + G + 
Sbjct: 293 ---PEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNIS----SWNTMITGYGQIGDIA 345

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           +AR+ F  M +++ +S+  +IAG   +G  EEAL  F +++ +G   +   F   L  C+
Sbjct: 346 QARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCA 405

Query: 420 HSGLATEGYRIF-QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
                  G +I  Q++K   G    +   + L+ +  + G +++A +  E +  K ++  
Sbjct: 406 DIAALELGKQIHGQAVKMGYGTGCFVG--NALLAMYFKCGSIDEANDTFEGIEEK-DVVS 462

Query: 479 WGTLLLACRNHQNVTLAEVVVEGL--VELKADDCGLYVLLS 517
           W T+L     H     A  V E +    +K D+  +  +LS
Sbjct: 463 WNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLS 503



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 173/372 (46%), Gaps = 46/372 (12%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D+   N  I  + + GH   A  VF     +  VS+N ++ G++   +   AR +FD+MP
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMP 107

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
           ++D  SW++M+ GY  +   +  AR LF+ MP KD++SWNS++ GYA+ G +  A+++F+
Sbjct: 108 ERDLFSWNVMLTGY-VRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFD 166

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLF---------------------------REM 298
            MPE+N  SW+ ++  Y  +G  +EA  LF                           R +
Sbjct: 167 NMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWL 226

Query: 299 LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
             +    D IS    IS  AQ G L   +   +F +    T D+   TA++  Y++ G L
Sbjct: 227 FDKMPVRDAISWNTMISGYAQGGGLSQAR--RLFDESP--TRDVFTWTAMVSGYVQNGML 282

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
           DEA+  F  M +KN +SYN MIAG       + A + F  M    I   + +  G     
Sbjct: 283 DEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGY---- 338

Query: 419 SHSGLATEGYRIFQSM-KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP--- 474
              G   +  + F  M +R C        ++ ++   +++G  E+ALN+   +       
Sbjct: 339 GQIGDIAQARKFFDMMPQRDC------VSWAAIIAGYAQSGHYEEALNMFVEIKQDGESL 392

Query: 475 NLALWGTLLLAC 486
           N A +G  L  C
Sbjct: 393 NRATFGCALSTC 404



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 174/357 (48%), Gaps = 24/357 (6%)

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY-RKKKGDISSARILFEH 235
           D++ WN  +   +  G    A  VF+ MP++ ++S++ MI GY R  K ++  AR LF+ 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNL--ARNLFDQ 105

Query: 236 MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
           MP +DL SWN M+ GY +   L  A++LF+ MPE++V SW+ ++ GYAQ+G   EA  +F
Sbjct: 106 MPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVF 165

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
             M       + IS  G ++A    G ++        +  S+   D+I    L+  +++ 
Sbjct: 166 DNM----PEKNSISWNGLLAAYVHNGRIEEA----CLLFESKSDWDLISWNCLMGGFVRK 217

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
             L +AR +F  M  ++ IS+N MI+G    G   +A + F +  T    +D   +  ++
Sbjct: 218 KKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPT----RDVFTWTAMV 273

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
                +G+  E    F  M      E     Y+ ++    +  +++ A  + ESMP + N
Sbjct: 274 SGYVQNGMLDEAKTFFDEMP-----EKNEVSYNAMIAGYVQTKKMDIARELFESMPCR-N 327

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           ++ W T++       ++  A    + + +    DC  +  +   YA +G +E AL +
Sbjct: 328 ISSWNTMITGYGQIGDIAQARKFFDMMPQ---RDCVSWAAIIAGYAQSGHYEEALNM 381



 Score = 45.8 bits (107), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 58/163 (35%), Gaps = 41/163 (25%)

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            FL V+I   ++GL   G   F  M     + P  +HY+C++DLL R   LE+       
Sbjct: 769 FFLLVVI---YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE------- 818

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
                     G LL A R H N  L E   +   ++   + G+                 
Sbjct: 819 ----------GALLGASRIHGNTELGEKAAQMFFKMGPQNSGI----------------- 851

Query: 530 LRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
                 MR   ++K  G S  E+   I  F  G     + E +
Sbjct: 852 ----SKMRDVGVQKVPGYSWFEVQNKIHTFSVGLFLSRERENI 890



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 8/157 (5%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D+A   F  I + +    NTM+ GY +    ++AL+ + +MK  G+  D  T   VL 
Sbjct: 444 SIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLS 503

Query: 121 ACGVLMGLVEGTEIHGEVVK-MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD-L 178
           AC     L  GTE    + K  G +        +I +  + G +  A+ +      +   
Sbjct: 504 ACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGA 563

Query: 179 VSWNLVL-----RGFVECGEMGKAREVFDEMPQKDAI 210
            SW  +L      G  E GE   A  VF   PQ   +
Sbjct: 564 ASWGALLGASRIHGNTELGEKA-AEMVFKMEPQNSGM 599


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 192/535 (35%), Positives = 299/535 (55%), Gaps = 26/535 (4%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK------GLLVDNYTY 115
           +  A RLF+ + + +    N+++ GY Q+    +A   + NM  K      GLL      
Sbjct: 127 LGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHN 186

Query: 116 PFVLKACGVLMGLVEGTEIHGEVVKMGFLC-----------------DVFVVNGLIGMYS 158
             + +AC +     +   I    +  GF+                  D    N +I  Y+
Sbjct: 187 GRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYA 246

Query: 159 KCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDG 218
           + G +  AR +F+ S  +D+ +W  ++ G+V+ G + +A+  FDEMP+K+ +S++ MI G
Sbjct: 247 QGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAG 306

Query: 219 Y-RKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSI 277
           Y + KK DI  AR LFE MP +++ SWN+MI GY +IGD+  A++ F+ MP+R+  SW+ 
Sbjct: 307 YVQTKKMDI--ARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAA 364

Query: 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337
           +I GYAQ G+ +EAL +F E+   G   +  +   A+S CA + AL+LGK IH    +  
Sbjct: 365 IIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMG 424

Query: 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFA 397
                 V  AL+ MY KCGS+DEA   F  + +K+V+S+N M+AG   +GFG +AL  F 
Sbjct: 425 YGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFE 484

Query: 398 QMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA 457
            M+T G+  D++  +GVL ACSH+GL   G   F SM +  G+ P  +HY+C++DLL RA
Sbjct: 485 SMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRA 544

Query: 458 GELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517
           G LE+A +++ +MP +P  A WG LL A R H N  L E   E + +++  + G+YVLLS
Sbjct: 545 GRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLS 604

Query: 518 NIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           N+YA +G W  A ++R  MR   ++K  G S +E+   I  F  G+    + E +
Sbjct: 605 NLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERI 659



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 130/461 (28%), Positives = 226/461 (49%), Gaps = 29/461 (6%)

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
           D A  +FN + + ++  +N MI GY ++S    A + +  M  + L   N          
Sbjct: 66  DSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNV--------- 116

Query: 123 GVLMGLVEGTEIHGEVVKMGFLC---DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
            +L G V    + G+  ++  L    DV   N L+  Y++ G++  AR VF+    K+ +
Sbjct: 117 -MLTGYVRNCRL-GDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSI 174

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239
           SWN +L  +V  G + +A  +F+     D ISW+ ++ G+ +KK  +  AR LF+ MP++
Sbjct: 175 SWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKK-KLGDARWLFDKMPVR 233

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           D ISWN+MI GYA+ G L  A++LF+E P R+VF+W+ M+ GY Q+G   EA   F EM 
Sbjct: 234 DAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM- 292

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
                 + +S    I+   Q   +D+ + +   M    I+        +I  Y + G + 
Sbjct: 293 ---PEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNIS----SWNTMITGYGQIGDIA 345

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           +AR+ F  M +++ +S+  +IAG   +G  EEAL  F +++ +G   +   F   L  C+
Sbjct: 346 QARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCA 405

Query: 420 HSGLATEGYRIF-QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
                  G +I  Q++K   G    +   + L+ +  + G +++A +  E +  K ++  
Sbjct: 406 DIAALELGKQIHGQAVKMGYGTGCFVG--NALLAMYFKCGSIDEANDTFEGIEEK-DVVS 462

Query: 479 WGTLLLACRNHQNVTLAEVVVEGL--VELKADDCGLYVLLS 517
           W T+L     H     A  V E +    +K D+  +  +LS
Sbjct: 463 WNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLS 503



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 173/372 (46%), Gaps = 46/372 (12%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D+   N  I  + + GH   A  VF     +  VS+N ++ G++   +   AR +FD+MP
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMP 107

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
           ++D  SW++M+ GY  +   +  AR LF+ MP KD++SWNS++ GYA+ G +  A+++F+
Sbjct: 108 ERDLFSWNVMLTGY-VRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFD 166

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLF---------------------------REM 298
            MPE+N  SW+ ++  Y  +G  +EA  LF                           R +
Sbjct: 167 NMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWL 226

Query: 299 LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
             +    D IS    IS  AQ G L   +   +F +    T D+   TA++  Y++ G L
Sbjct: 227 FDKMPVRDAISWNTMISGYAQGGGLSQAR--RLFDESP--TRDVFTWTAMVSGYVQNGML 282

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
           DEA+  F  M +KN +SYN MIAG       + A + F  M    I   + +  G     
Sbjct: 283 DEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGY---- 338

Query: 419 SHSGLATEGYRIFQSM-KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP--- 474
              G   +  + F  M +R C        ++ ++   +++G  E+ALN+   +       
Sbjct: 339 GQIGDIAQARKFFDMMPQRDC------VSWAAIIAGYAQSGHYEEALNMFVEIKQDGESL 392

Query: 475 NLALWGTLLLAC 486
           N A +G  L  C
Sbjct: 393 NRATFGCALSTC 404



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 174/357 (48%), Gaps = 24/357 (6%)

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY-RKKKGDISSARILFEH 235
           D++ WN  +   +  G    A  VF+ MP++ ++S++ MI GY R  K ++  AR LF+ 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNL--ARNLFDQ 105

Query: 236 MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
           MP +DL SWN M+ GY +   L  A++LF+ MPE++V SW+ ++ GYAQ+G   EA  +F
Sbjct: 106 MPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVF 165

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
             M       + IS  G ++A    G ++        +  S+   D+I    L+  +++ 
Sbjct: 166 DNM----PEKNSISWNGLLAAYVHNGRIEEA----CLLFESKSDWDLISWNCLMGGFVRK 217

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
             L +AR +F  M  ++ IS+N MI+G    G   +A + F +  T    +D   +  ++
Sbjct: 218 KKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPT----RDVFTWTAMV 273

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
                +G+  E    F  M      E     Y+ ++    +  +++ A  + ESMP + N
Sbjct: 274 SGYVQNGMLDEAKTFFDEMP-----EKNEVSYNAMIAGYVQTKKMDIARELFESMPCR-N 327

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           ++ W T++       ++  A    + + +    DC  +  +   YA +G +E AL +
Sbjct: 328 ISSWNTMITGYGQIGDIAQARKFFDMMPQR---DCVSWAAIIAGYAQSGHYEEALNM 381



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 8/157 (5%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D+A   F  I + +    NTM+ GY +    ++AL+ + +MK  G+  D  T   VL 
Sbjct: 444 SIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLS 503

Query: 121 ACGVLMGLVEGTEIHGEVVK-MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD-L 178
           AC     L  GTE    + K  G +        +I +  + G +  A+ +      +   
Sbjct: 504 ACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGA 563

Query: 179 VSWNLVL-----RGFVECGEMGKAREVFDEMPQKDAI 210
            SW  +L      G  E GE   A  VF   PQ   +
Sbjct: 564 ASWGALLGASRIHGNTELGEKA-AEMVFKMEPQNSGM 599


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 183/491 (37%), Positives = 288/491 (58%), Gaps = 42/491 (8%)

Query: 111 DNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF 170
           D+ T+PF++KAC  L     G  + G V K+GF  DVFVVN  +  +S  G M  AR +F
Sbjct: 120 DHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAMHFWSVRGPMAFARRLF 179

Query: 171 EGSEIKDLVSWNLVLRGFVECGEMGKAREVF------------DEMPQKDAIS------- 211
           + S ++D+VSWN ++ G+V  G   +A E+F            DE+    A+S       
Sbjct: 180 DESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGD 239

Query: 212 ----------------------WSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMID 249
                                  + ++D Y  K G +  A  +FE +  +  +SW +MI 
Sbjct: 240 LELGKRLHEFVDNKGVRCTVRLMNAVMDMY-VKCGSLELANSVFERISNRTAVSWTTMIV 298

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
           G+A++G +  A+ LF+EMPER+VF W+ ++ GY Q+   KEA+ LF EM    V P+ I+
Sbjct: 299 GHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEIT 358

Query: 310 VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369
           ++  +SAC+Q+GAL++G W+H ++ R ++ + + + T+L+DMY KCG++ +A  +F  + 
Sbjct: 359 MVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIP 418

Query: 370 KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR 429
            +N +++  MI GL  +G  +EA++ F +M   G+  D++ F+GVL AC H+GL   G +
Sbjct: 419 VQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQ 478

Query: 430 IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
            F  M     +E K++HYSC++DLL RAG L++A  +V +MPM P+  +WG L  ACR H
Sbjct: 479 FFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMDPDAVVWGALFFACRMH 538

Query: 490 QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSV 549
            N+TL E     LVEL   D G+YVLL+N+YA+A M + A ++R MMR   ++K  G S 
Sbjct: 539 GNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSC 598

Query: 550 IEIDGNIKEFV 560
           IE++G + EF+
Sbjct: 599 IELNGVVHEFI 609



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 207/434 (47%), Gaps = 51/434 (11%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV--DNYTYPFVL 119
           M  A RLF++    +    NT+I GY +S  P++AL  +  +   G  V  D  T    +
Sbjct: 172 MAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAV 231

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
             C  +  L  G  +H  V   G  C V ++N ++ MY KCG +  A SVFE    +  V
Sbjct: 232 SGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAV 291

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY-RKKKG--------DISSAR 230
           SW  ++ G    G M  AR +FDEMP++D   W+ ++ GY + K+G        ++  ++
Sbjct: 292 SWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSK 351

Query: 231 ILFEHMPIKDLIS------------W-----------------NSMIDGYAKIGDLVAAQ 261
           +    + + +L+S            W                  S++D YAK G++  A 
Sbjct: 352 VDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAI 411

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
            +FNE+P +N  +W+ MI G A HG+  EA+  F+ M+  G++PD I+ +G +SAC   G
Sbjct: 412 CVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAG 471

Query: 322 ALDLGKWIHVFMK-RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVM 379
            ++ G+     M  +  +   M   + +ID+  + G LDEA ++  +M    + + +  +
Sbjct: 472 LVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMDPDAVVWGAL 531

Query: 380 IAGLGMNG---FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436
                M+G    GE+A     +++    P D  I++ +    + + +  +  ++ + M R
Sbjct: 532 FFACRMHGNITLGEKAAMKLVELD----PSDSGIYVLLANMYAEANMRKKADKV-RVMMR 586

Query: 437 HCGIEPKLEHYSCL 450
           H G+E K+   SC+
Sbjct: 587 HLGVE-KVPGCSCI 599



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 101/204 (49%), Gaps = 5/204 (2%)

Query: 284 QHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
           QH   +  L L+R +L  G  RPD ++    I ACA++     G  +   +++   + D+
Sbjct: 97  QHLVDRHCLPLYRALLHSGSARPDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADV 156

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
            V  A +  +   G +  ARR+F     ++V+S+N +I G   +G   EAL+ F ++  +
Sbjct: 157 FVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAED 216

Query: 403 G--IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460
           G  +  D++  +G +  C+  G    G R+ + +    G+   +   + ++D+  + G L
Sbjct: 217 GNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNK-GVRCTVRLMNAVMDMYVKCGSL 275

Query: 461 EQALNIVESMPMKPNLALWGTLLL 484
           E A ++ E +  +  ++ W T+++
Sbjct: 276 ELANSVFERISNRTAVS-WTTMIV 298


>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 636

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 201/553 (36%), Positives = 298/553 (53%), Gaps = 47/553 (8%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           L+S LQ   +   + Q    +T + L   PF +S+++  L+     ++  A+ +F     
Sbjct: 115 LLSKLQQLSSVKEVEQTQCLITKSGLFNHPFVISKIISFLSLSPLGSLVYAQAIFEDTAM 174

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG--- 131
            N ++ NTMIR Y +S  P KA+  Y  M RK +  D++TYPF LKAC  ++   EG   
Sbjct: 175 DNPFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIKSDHFTYPFGLKACARVLWCNEGDIK 234

Query: 132 ----------TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
                      EIH  + ++G   D F+ N L+ +YS+CG +  AR              
Sbjct: 235 CTQLDIACKGAEIHCRLFRLGLDQDCFIQNSLVYLYSQCGFLDLARC------------- 281

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
                             VFDEM +K   SW++MI  Y  +  D  SA  L   MP K++
Sbjct: 282 ------------------VFDEMTEKTITSWNVMISAY-DQINDFDSADSLIGSMPGKNV 322

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
           +SWN +I  Y ++G +  A+ +F EMPER+  SW+ MI GY Q  +   AL LFREM   
Sbjct: 323 VSWNMLIARYIRLGKIEDAKVVFQEMPERDAVSWNSMIAGYVQIKDYARALALFREMEIA 382

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
            V    I+++  + ACA+ GAL++G+ IH+ +K+    ++  +  AL+DMY KCG L+ A
Sbjct: 383 NVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNALVDMYAKCGHLNLA 442

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME--TEGIPKDDLIFLGVLIACS 419
             +F  +  K++  +N MI  L ++G+ EEAL+ F+ ME   +G   + + F+GVLIACS
Sbjct: 443 WEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRVTFIGVLIACS 502

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           H GL  EG   F  M     I P ++HY C+VDLLSR G L++A +++++MP + N  LW
Sbjct: 503 HKGLVDEGRTFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHMIKTMPFEANSVLW 562

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
            TLL ACR H +V LAE   + L +++    G YVLLSNIYA+A  W    R+R  M   
Sbjct: 563 RTLLGACRVHHHVDLAEESFQQLGKMEPLRDGDYVLLSNIYAEAQRWNDVERVRSEMIGS 622

Query: 540 KIKKETGRSVIEI 552
            + K+ G S I I
Sbjct: 623 GVPKKPGSSHIGI 635


>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
 gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
          Length = 686

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 187/553 (33%), Positives = 301/553 (54%), Gaps = 54/553 (9%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           AERLF  + + +T  +N M+ GY  +     ALSF+ ++ R     D+++Y  +L A GV
Sbjct: 54  AERLFAAMSRRSTSTYNAMLGGYAANGRLTLALSFFRSIPRP----DSFSYNTLLHALGV 109

Query: 125 LMGLVEGTEIHGEV---------------VKMGFLC------------DVFVVNGLIGMY 157
              L +   +  E+                  G +             D    NG++  Y
Sbjct: 110 SSSLADARALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAY 169

Query: 158 SKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMID 217
            + G +  AR +F+     D +SWN ++ G+V+C ++ +A+++F+ MPQ+D +SW+ M+ 
Sbjct: 170 IRNGRIQEARDLFDSRTEWDAISWNALMAGYVQCSQIEEAQKMFNRMPQRDVVSWNTMVS 229

Query: 218 GYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSI 277
           G+  ++GD++ AR LF+  PI+D+ +W +++ GYA+ G L  A+++F+ MPE+N  SW+ 
Sbjct: 230 GH-ARRGDMAEARRLFDVAPIRDVFTWTAVVSGYAQNGMLEEAKRVFDAMPEKNAVSWNA 288

Query: 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR-- 335
           M+  Y Q    +EA  LF  M C+    +V S    ++  AQ G LD  + I   M +  
Sbjct: 289 MMAAYVQRRMMEEAKELFDAMPCR----NVASWNTMLTGYAQAGMLDEARAIFDMMPQKD 344

Query: 336 ----------------SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVM 379
                           S  T+ +  +     MY KCG+++EA   F  M +++++S+N M
Sbjct: 345 AVSWAAMLAAYSQGGFSEETLQLFKEMGRCAMYFKCGNMEEAHSAFEEMEERDIVSWNTM 404

Query: 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439
           IAG   +GFG+EAL+ F  M       DD+  +GVL ACSHSGL  +G   F SM R  G
Sbjct: 405 IAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFG 464

Query: 440 IEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVV 499
           +  K EHY+C++DLL RAG L++A+N+++ MP +P+  +WG LL A R H+N  L     
Sbjct: 465 VTAKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAA 524

Query: 500 EGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEF 559
           E + EL+ ++ G+YVLLSNIYA +G W    ++R MM +R +KK  G S IE+   +  F
Sbjct: 525 EKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRLMMHERGVKKVPGFSWIEVQNKVHTF 584

Query: 560 VSGEIFDVQSEEL 572
             G+    + E++
Sbjct: 585 SVGDSVHPEREDI 597



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 180/382 (47%), Gaps = 49/382 (12%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           +K+ +   + IS    H L  LA+    DL  E   +S   M         + +A  LF+
Sbjct: 125 VKDSVSYNVMISSHANHGLVSLARHYF-DLAPEKDAVSWNGMLAAYIRNGRIQEARDLFD 183

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
              + +    N ++ GY Q S  ++A   +  M ++ ++  N               +V 
Sbjct: 184 SRTEWDAISWNALMAGYVQCSQIEEAQKMFNRMPQRDVVSWN--------------TMVS 229

Query: 131 GTEIHGEVVK------MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           G    G++ +      +  + DVF    ++  Y++ G +  A+ VF+    K+ VSWN +
Sbjct: 230 GHARRGDMAEARRLFDVAPIRDVFTWTAVVSGYAQNGMLEEAKRVFDAMPEKNAVSWNAM 289

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
           +  +V+   M +A+E+FD MP ++  SW+ M+ GY  + G +  AR +F+ MP KD +SW
Sbjct: 290 MAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGY-AQAGMLDEARAIFDMMPQKDAVSW 348

Query: 245 NSMIDGYA----------------------KIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
            +M+  Y+                      K G++  A   F EM ER++ SW+ MI GY
Sbjct: 349 AAMLAAYSQGGFSEETLQLFKEMGRCAMYFKCGNMEEAHSAFEEMEERDIVSWNTMIAGY 408

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR---IT 339
           A+HG  KEAL +F  M     +PD I+++G ++AC+  G ++ G  I  F    R   +T
Sbjct: 409 ARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKG--ISYFYSMHRDFGVT 466

Query: 340 MDMIVQTALIDMYMKCGSLDEA 361
                 T +ID+  + G LDEA
Sbjct: 467 AKPEHYTCMIDLLGRAGRLDEA 488



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 150/347 (43%), Gaps = 54/347 (15%)

Query: 222 KKGDISSARILFEHMPIKDLISWNSMIDGYAKIG-------------------------- 255
           + G +  A  LF  M  +   ++N+M+ GYA  G                          
Sbjct: 47  RAGRVPDAERLFAAMSRRSTSTYNAMLGGYAANGRLTLALSFFRSIPRPDSFSYNTLLHA 106

Query: 256 -----DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
                 L  A+ LF+EMP ++  S+++MI  +A HG     + L R         D +S 
Sbjct: 107 LGVSSSLADARALFDEMPVKDSVSYNVMISSHANHG----LVSLARHYFDLAPEKDAVSW 162

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
            G ++A  + G +   +   +F   SR   D I   AL+  Y++C  ++EA+++F  M +
Sbjct: 163 NGMLAAYIRNGRIQEAR--DLF--DSRTEWDAISWNALMAGYVQCSQIEEAQKMFNRMPQ 218

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP-KDDLIFLGVLIACSHSGLATEGYR 429
           ++V+S+N M++G    G   EA + F     +  P +D   +  V+   + +G+  E  R
Sbjct: 219 RDVVSWNTMVSGHARRGDMAEARRLF-----DVAPIRDVFTWTAVVSGYAQNGMLEEAKR 273

Query: 430 IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
           +F +M     +      ++ ++    +   +E+A  + ++MP + N+A W T+L      
Sbjct: 274 VFDAMPEKNAVS-----WNAMMAAYVQRRMMEEAKELFDAMPCR-NVASWNTMLTGYAQA 327

Query: 490 QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
             +  A  + + + +    D   +  +   Y+  G  E  L++ K M
Sbjct: 328 GMLDEARAIFDMMPQ---KDAVSWAAMLAAYSQGGFSEETLQLFKEM 371



 Score = 42.4 bits (98), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 11/149 (7%)

Query: 341 DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME 400
           ++I +   I  +M+ G + +A R+F +M++++  +YN M+ G   NG    AL  F    
Sbjct: 34  EVIRRNKAITAHMRAGRVPDAERLFAAMSRRSTSTYNAMLGGYAANGRLTLALSFF---- 89

Query: 401 TEGIPKDDLIFLGVLI-ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
              IP+ D      L+ A   S    +   +F  M     +      Y+ ++   +  G 
Sbjct: 90  -RSIPRPDSFSYNTLLHALGVSSSLADARALFDEMPVKDSVS-----YNVMISSHANHGL 143

Query: 460 LEQALNIVESMPMKPNLALWGTLLLACRN 488
           +  A +  +  P K  ++  G L    RN
Sbjct: 144 VSLARHYFDLAPEKDAVSWNGMLAAYIRN 172


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 202/577 (35%), Positives = 316/577 (54%), Gaps = 73/577 (12%)

Query: 10  SLKNPLVS------LLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMD 63
           + K PL S       L+  K+   I Q  A L T  LI  P T ++LL  L + +  ++ 
Sbjct: 7   TFKKPLNSNQLQLFSLESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLS 66

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQ-SSNPQKALSFYVNMKR-KGLLVDNYTYPFVLKA 121
            A +LF+QI +P+ +++NTMI+ +    ++   ++  +++M R  G L + YT+ FV KA
Sbjct: 67  YAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKA 126

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           CG  +G++EG +I    +K+G   ++FV N +I MY+                     +W
Sbjct: 127 CGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYA---------------------NW 165

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
            LV           +AR VFD         WS+                        +DL
Sbjct: 166 GLV----------DEARRVFD---------WSL-----------------------DQDL 183

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
            SWN MI GY   G++  A+++F+EM ER+V SW+ +I GY Q G  KEAL LF EML  
Sbjct: 184 YSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQT 243

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
           G  P+  ++  A++ACA + ALD G+WIHV++ +S I M+  +  +L+DMY KCG +D A
Sbjct: 244 GPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFA 303

Query: 362 RRIFYSMT--KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
            ++F+     K  V  +N MI G  M+G  +EA+  F QM+ E +  + + F+ +L ACS
Sbjct: 304 AKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACS 363

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           H  L  EG   F+SM    GIEP++EHY C+VDLL R+G L++A   V +MPM P+  +W
Sbjct: 364 HGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIW 423

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
           G LL ACR H+++   + + + + EL +D  G +VLL+N+Y+ +G W+ A  +R+ +   
Sbjct: 424 GALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVS 483

Query: 540 KIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
             KK  G S IE++G   +F+ G+    Q+++L L +
Sbjct: 484 GRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFL 520


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 190/531 (35%), Positives = 298/531 (56%), Gaps = 51/531 (9%)

Query: 80  HNTMIRGYTQSSNP--------QKALSFYVNMKRKGLL-VDNYTYPFVLKACGVLMGLVE 130
           +N  IR  + S +         ++ L  Y  + R G    D+ T+PF+LKAC  L     
Sbjct: 84  YNAAIRALSLSDDGDRHGHGVVRRCLPLYRALLRSGTARPDHLTFPFLLKACARLREWGY 143

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G      V+++G   DVFVVN      S  G M  AR +F+ S ++DLVSWN ++ G+V 
Sbjct: 144 GDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVR 203

Query: 191 CGEMGKAREVFDEMPQKDAIS--------------------------------------- 211
            G   +A E+F  M  +DA+                                        
Sbjct: 204 RGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTV 263

Query: 212 --WSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269
              + ++D Y  K G +  A+ +FE +  + ++SW +MI G+AK G +  A+++F+EMPE
Sbjct: 264 RLMNALMDMY-IKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPE 322

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329
           R+VF W+ ++ GY Q    KEAL LF EM    V PD I+++  ++AC+Q+GAL++G W+
Sbjct: 323 RDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWV 382

Query: 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFG 389
           H ++++ R+   + + T+LIDMY KCG++++A  IF  + +KN +++  MI GL  +G  
Sbjct: 383 HRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHA 442

Query: 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449
            EA++ F  M   G   D++ F+GVL AC H+GL  EG   F  M+    +E K++HYSC
Sbjct: 443 NEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSC 502

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509
           ++DLL RAG L++A  +V +MPM+P+  +WG +  ACR   N++L E     LVE+   D
Sbjct: 503 MIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVEIDPSD 562

Query: 510 CGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
            G+YVLL+N+YA+A M + A ++R MMR   ++K  G S IE++G + EF+
Sbjct: 563 SGIYVLLANMYAEANMRKKADKVRAMMRHLGVEKVPGCSCIELNGVVHEFI 613



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 125/434 (28%), Positives = 215/434 (49%), Gaps = 51/434 (11%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV--DNYTYPFVL 119
           M+ A RLF++    +    NT+I GY +  NP +AL  +  M  +  +V  D  T    +
Sbjct: 176 MEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAV 235

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
             CG +  L  G  +HG V   G  C V ++N L+ MY KCG +  A+SVFE  E + +V
Sbjct: 236 SGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVV 295

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK---------GDISSAR 230
           SW  ++ GF + G M  AR+VFDEMP++D   W+ ++ GY + K          ++  A 
Sbjct: 296 SWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEAS 355

Query: 231 ILFEHMPIKDLIS------------W-----------------NSMIDGYAKIGDLVAAQ 261
           ++ + + + +L++            W                  S+ID YAK G++  A 
Sbjct: 356 VVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAI 415

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
            +F E+PE+N  +W+ MI G A HG+  EA+  FR M+  G +PD I+ +G +SAC   G
Sbjct: 416 HIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAG 475

Query: 322 ALDLGKWIHVFMK-RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVM 379
            +  G+     M+ +  +   M   + +ID+  + G LDEA ++  +M  + + + +  +
Sbjct: 476 LVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAI 535

Query: 380 IAGLGMNG---FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436
                M G    GE+A     +++    P D  I++ +    + + +  +  ++ ++M R
Sbjct: 536 FFACRMQGNISLGEKAAMKLVEID----PSDSGIYVLLANMYAEANMRKKADKV-RAMMR 590

Query: 437 HCGIEPKLEHYSCL 450
           H G+E K+   SC+
Sbjct: 591 HLGVE-KVPGCSCI 603


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 193/527 (36%), Positives = 291/527 (55%), Gaps = 29/527 (5%)

Query: 64   QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            +A+ +F      +    N+MI G+ Q  + + A   ++ MK++GL  D  T+  VL  C 
Sbjct: 539  EAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCK 598

Query: 124  VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
                L  G +IH  +++ G   DV + N LI MY +CG +  A  VF     ++++SW  
Sbjct: 599  NPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTA 658

Query: 184  VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS--------------- 228
            ++ GF + GE  KA E+F          W +  DG++  K   SS               
Sbjct: 659  MIGGFADQGEDRKAFELF----------WQMQNDGFKPVKSTFSSILKACMSSACLDEGK 708

Query: 229  ---ARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
               A IL     + D    N++I  Y+K G +  A+++F++MP R++ SW+ MI GYAQ+
Sbjct: 709  KVIAHILNSGYEL-DTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQN 767

Query: 286  GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
            G    AL    +M  QGV  +  S +  ++AC+   AL+ GK +H  + + ++  D+ V 
Sbjct: 768  GLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVG 827

Query: 346  TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
             ALI MY KCGSL+EA+ +F + T+KNV+++N MI     +G   +AL  F  M+ EGI 
Sbjct: 828  AALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIK 887

Query: 406  KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
             D   F  +L AC+HSGL  EG RIF S++   G+ P +EHY CLV LL RAG  ++A  
Sbjct: 888  PDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAET 947

Query: 466  IVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM 525
            ++  MP  P+ A+W TLL ACR H NV LAE      ++L A +  +YVLLSN+YA AG 
Sbjct: 948  LINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGR 1007

Query: 526  WEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            W+   +IR++M  R I+KE GRS IE+D  I EF++ +    ++ E+
Sbjct: 1008 WDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEI 1054



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 122/431 (28%), Positives = 221/431 (51%), Gaps = 11/431 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  A ++F+ IY+ +   +NTM+  Y Q +  ++ +  +  M  +G+  D  TY  +L 
Sbjct: 233 DLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLD 292

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           A      L EG  IH   V  G   D+ V   L  M+ +CG +  A+   E    +D+V 
Sbjct: 293 AFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVV 352

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAI----SWSIMIDGYRKKKGDISSARILFEHM 236
           +N ++    + G   +A E + +M     +    ++  +++     K  + +  ++  H+
Sbjct: 353 YNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKA-LGAGELIHSHI 411

Query: 237 P----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
                  D+   NS+I  YA+ GDL  A++LFN MP+R++ SW+ +I GYA+  +  EA+
Sbjct: 412 SEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAM 471

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            L+++M  +GV+P  ++ +  +SAC    A   GK IH  + RS I  +  +  AL++MY
Sbjct: 472 KLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMY 531

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            +CGS+ EA+ +F     +++IS+N MIAG   +G  E A K F +M+ EG+  D + F 
Sbjct: 532 RRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFA 591

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            VL+ C +   A E  R    +    G++  +   + L+++  R G L+ A  +  S+  
Sbjct: 592 SVLVGCKNPE-ALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRH 650

Query: 473 KPNLALWGTLL 483
           + N+  W  ++
Sbjct: 651 R-NVMSWTAMI 660



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 121/443 (27%), Positives = 212/443 (47%), Gaps = 71/443 (16%)

Query: 79  MHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEV 138
           ++N +I    Q  + ++A   Y  M+  G++++  TY  VL AC     L  G  IH  +
Sbjct: 352 VYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHI 411

Query: 139 VKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAR 198
            ++G   DV + N LI MY++CG                               ++ +AR
Sbjct: 412 SEVGHSSDVQIGNSLISMYARCG-------------------------------DLPRAR 440

Query: 199 EVFDEMPQKDAISWSIMIDGY--RKKKGD------------ISSARILFEH--------- 235
           E+F+ MP++D ISW+ +I GY  R+ +G+            +   R+ F H         
Sbjct: 441 ELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSS 500

Query: 236 ------MPIKDLIS---------WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMID 280
                 M  +D++           N++++ Y + G ++ AQ +F     R++ SW+ MI 
Sbjct: 501 AYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIA 560

Query: 281 GYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM 340
           G+AQHG+ + A  LF EM  +G+ PD I+    +  C    AL+LG+ IH+ +  S + +
Sbjct: 561 GHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQL 620

Query: 341 DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME 400
           D+ +  ALI+MY++CGSL +A  +F+S+  +NV+S+  MI G    G   +A + F QM+
Sbjct: 621 DVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQ 680

Query: 401 TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460
            +G       F  +L AC  S    EG ++   +  + G E      + L+   S++G +
Sbjct: 681 NDGFKPVKSTFSSILKACMSSACLDEGKKVIAHI-LNSGYELDTGVGNALISAYSKSGSM 739

Query: 461 EQALNIVESMPMKPNLALWGTLL 483
             A  + + MP + ++  W  ++
Sbjct: 740 TDARKVFDKMPNR-DIMSWNKMI 761



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/557 (24%), Positives = 259/557 (46%), Gaps = 51/557 (9%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           +I AQ+    +  + F LS LL+++      ++  A ++F ++ + +    N++I  Y Q
Sbjct: 103 RIHAQMVEAGVGPDIF-LSNLLINMYV-KCRSVSDAHQVFLKMPRRDVISWNSLISCYAQ 160

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
               +KA   +  M+  G +    TY  +L AC     L  G +IH ++++ G+  D  V
Sbjct: 161 QGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRV 220

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK-- 207
            N L+ MY KC  +  AR VF G   +D+VS+N +L  + +   + +   +F +M  +  
Sbjct: 221 QNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGI 280

Query: 208 --DAISWSIMIDGYRKKKGDISSARI---LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQ 262
             D +++  ++D +          RI           D+    ++   + + GD+  A+Q
Sbjct: 281 PPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQ 340

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
                 +R+V  ++ +I   AQHG+ +EA   + +M   GV  +  + +  ++AC+   A
Sbjct: 341 ALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKA 400

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
           L  G+ IH  +     + D+ +  +LI MY +CG L  AR +F +M K+++IS+N +IAG
Sbjct: 401 LGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAG 460

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
                   EA+K + QM++EG+    + FL +L AC++S   ++G  I + + R  GI+ 
Sbjct: 461 YARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILR-SGIKS 519

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMP------------------------------- 471
                + L+++  R G + +A N+ E                                  
Sbjct: 520 NGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMK 579

Query: 472 ---MKPNLALWGTLLLACRNHQNVTLAE----VVVEGLVELKADDCGLYVLLSNIYADAG 524
              ++P+   + ++L+ C+N + + L      +++E  ++L   D  L   L N+Y   G
Sbjct: 580 KEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQL---DVNLGNALINMYIRCG 636

Query: 525 MWEHALRIRKMMRKRKI 541
             + A  +   +R R +
Sbjct: 637 SLQDAYEVFHSLRHRNV 653



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 188/378 (49%), Gaps = 11/378 (2%)

Query: 114 TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS 173
            Y  +++ C     L E   IH ++V+ G   D+F+ N LI MY KC  +  A  VF   
Sbjct: 84  AYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKM 143

Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIM--------IDGYRKKKGD 225
             +D++SWN ++  + + G   KA ++F+EM     I   I               + G 
Sbjct: 144 PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGK 203

Query: 226 ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
              ++I+ E    +D    NS+++ Y K  DL +A+Q+F+ +  R+V S++ M+  YAQ 
Sbjct: 204 KIHSKII-EAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQK 262

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
              +E + LF +M  +G+ PD ++ +  + A      LD GK IH       +  D+ V 
Sbjct: 263 AYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVG 322

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
           TAL  M+++CG +  A++   +   ++V+ YN +IA L  +G  EEA + + QM ++G+ 
Sbjct: 323 TALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVV 382

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
            +   +L VL ACS S     G  +  S     G    ++  + L+ + +R G+L +A  
Sbjct: 383 MNRTTYLSVLNACSTSKALGAG-ELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARE 441

Query: 466 IVESMPMKPNLALWGTLL 483
           +  +MP K +L  W  ++
Sbjct: 442 LFNTMP-KRDLISWNAII 458



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 161/377 (42%), Gaps = 64/377 (16%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  A  +F+ +   N      MI G+      +KA   +  M+  G      T+  +LK
Sbjct: 637 SLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILK 696

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC     L EG ++   ++  G+  D  V N LI  YSK G M  AR VF+    +D++S
Sbjct: 697 ACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMS 756

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAI--------------SWSIMIDGYRKKKGDI 226
           WN ++ G+ + G  G A +   +M ++  +              S+S + +G R      
Sbjct: 757 WNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKR------ 810

Query: 227 SSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
             A I+   M   D+    ++I  YAK G L  AQ++F+   E+NV +W+ MI+ YAQHG
Sbjct: 811 VHAEIVKRKMQ-GDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHG 869

Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
              +AL  F  M  +G++PD  +    +SAC   G                + M      
Sbjct: 870 LASKALDFFNCMDKEGIKPDGSTFTSILSACNHSG----------------LVM------ 907

Query: 347 ALIDMYMKCGSLDEARRIFYSMTKKNVIS-----YNVMIAGLGMNGFGEEALKCFAQMET 401
                        E  RIF S+  ++ +S     Y  ++  LG  G  +EA     QM  
Sbjct: 908 -------------EGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMP- 953

Query: 402 EGIPKDDLIFLGVLIAC 418
              P D  ++  +L AC
Sbjct: 954 --FPPDAAVWETLLGAC 968



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 134/302 (44%), Gaps = 17/302 (5%)

Query: 61   NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            +M  A ++F+++   +    N MI GY Q+     AL F   M+ +G++++ +++  +L 
Sbjct: 738  SMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILN 797

Query: 121  ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            AC     L EG  +H E+VK     DV V   LI MY+KCG +  A+ VF+    K++V+
Sbjct: 798  ACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVT 857

Query: 181  WNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARIL---- 232
            WN ++  + + G   KA + F+ M ++    D  +++ ++         +   RI     
Sbjct: 858  WNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLE 917

Query: 233  FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEA 291
             +H     +  +  ++    + G    A+ L N+MP   +   W  ++     HGN   A
Sbjct: 918  SQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALA 977

Query: 292  LYLFREMLCQGVR--------PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
             +     L    R         +V +  G     A++  +  G+ I     RS I +D I
Sbjct: 978  EHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNI 1037

Query: 344  VQ 345
            + 
Sbjct: 1038 IH 1039



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 5/128 (3%)

Query: 296 REMLCQGVRPDVISVMGA-----ISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
           RE L    +P       A     +  C +  +L   K IH  M  + +  D+ +   LI+
Sbjct: 66  REDLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLIN 125

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           MY+KC S+ +A ++F  M +++VIS+N +I+     GF ++A + F +M+T G     + 
Sbjct: 126 MYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKIT 185

Query: 411 FLGVLIAC 418
           ++ +L AC
Sbjct: 186 YISILTAC 193


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 191/556 (34%), Positives = 308/556 (55%), Gaps = 68/556 (12%)

Query: 45  FTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMK 104
           FT + L+  LT    L  D+A RLF  + +P+    N+M+ G+ Q    +++L ++V M 
Sbjct: 82  FTWNSLISVLTKSGFL--DEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMH 139

Query: 105 RKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG 164
           R+  L++ Y++   L AC  LM L  GT++H  V K  +  DV++ + LI MYSKCG + 
Sbjct: 140 REDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVA 199

Query: 165 CARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVF----------DEMP--------- 205
           CA  VF G   ++LV+WN ++  + + G   +A EVF          DE+          
Sbjct: 200 CAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACA 259

Query: 206 ---------------------QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
                                + D +  + ++D Y  K   ++ AR +F+ M I++++S 
Sbjct: 260 SLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMY-AKCSKVNEARRVFDRMSIRNVVSE 318

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
            SM+ GYA+   + AA+ +F++M +RNV SW+ +I GY Q+G  +EAL LFR +  + + 
Sbjct: 319 TSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIW 378

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           P   +    + +                        D+ V  +LIDMYMKCGS+++  R+
Sbjct: 379 PTHYTFGNLLKS------------------------DIFVGNSLIDMYMKCGSIEDGSRV 414

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F  M +++ +S+N +I G   NG+G EAL+ F +M   G   D +  +GVL ACSH+GL 
Sbjct: 415 FEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLV 474

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            EG   F SM+ H G+ P  +HY+C+VDLL RAG L +A N++E+MP+ P+  +WG+LL 
Sbjct: 475 EEGRHYFFSMEEH-GLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLA 533

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           AC+ H N+ + +   E L+E+   + G YVLLSN+YA+ G W   +R+RK+MR++ + K+
Sbjct: 534 ACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQ 593

Query: 545 TGRSVIEIDGNIKEFV 560
            G S IE++  +  F+
Sbjct: 594 PGCSWIEVESRVHVFL 609



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 167/327 (51%), Gaps = 5/327 (1%)

Query: 215 MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
           +ID Y K    +  AR LF+ MP ++  +WNS+I    K G L  A +LF  MPE +  S
Sbjct: 56  LIDVYGKCDC-LDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCS 114

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W+ M+ G+AQH   +E+L  F +M  +    +  S   A+SACA +  L++G  +H  + 
Sbjct: 115 WNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVS 174

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
           +SR + D+ + +ALIDMY KCGS+  A  +F  M ++N++++N +I     NG   EAL+
Sbjct: 175 KSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALE 234

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
            F +M   G+  D++    V+ AC+      EG +I   + +       L   + LVD+ 
Sbjct: 235 VFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMY 294

Query: 455 SRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYV 514
           ++  ++ +A  + + M ++ N+    +++       +V  A  +   + +        + 
Sbjct: 295 AKCSKVNEARRVFDRMSIR-NVVSETSMVSGYARAASVKAARFMFSKMTQRNVVS---WN 350

Query: 515 LLSNIYADAGMWEHALRIRKMMRKRKI 541
            L   Y   G  E ALR+ +++++  I
Sbjct: 351 ALIAGYTQNGENEEALRLFRLLKRESI 377


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 186/517 (35%), Positives = 299/517 (57%), Gaps = 25/517 (4%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL-VDNYTYPFVLK 120
           ++ A ++F+++ + +T + NTMI GY ++    +++  + ++  +    +D  T   +L 
Sbjct: 170 VEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILP 229

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           A   L  L  G +IH    K G     +V+ G I +YSKCG +  A ++F      D+V+
Sbjct: 230 AVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVA 289

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI-- 238
           +N ++ G+   GE   +  +F E+          M+ G + K   + S   +  H+ +  
Sbjct: 290 YNAMIHGYTSNGETELSLSLFKEL----------MLSGAKLKSSTLVSLVPVSGHLMLIY 339

Query: 239 --------KDLISWNSMIDG----YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
                    + +S  S+       Y+K+ ++ +A++LF+E PE+++ SW+ MI GY Q+G
Sbjct: 340 AIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNG 399

Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
             ++A+ LFREM      P+ +++   +SACAQ+GAL LGKW+H  ++ +     + V T
Sbjct: 400 LTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVST 459

Query: 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK 406
           ALI MY KCGS+ EARR+F  M KKN +++N MI+G G++G G+EAL  F++M   GI  
Sbjct: 460 ALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAP 519

Query: 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466
             + FL VL ACSH+GL  EG  IF SM    G EP ++HY+C+VD+L RAG L++AL  
Sbjct: 520 TPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQF 579

Query: 467 VESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMW 526
           +E+MP++P  ++W TLL ACR H++  LA  V E L EL  D+ G +VLLSNI++    +
Sbjct: 580 IEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNY 639

Query: 527 EHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
             A  +R+  +KRK+ K  G ++IEI      F SG+
Sbjct: 640 PQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGD 676



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 111/485 (22%), Positives = 223/485 (45%), Gaps = 24/485 (4%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           KN  + L + S + +H+ Q  AQ+  +    +   L++L   L+    +    A  +F  
Sbjct: 20  KNNFLDLFKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYY--ARDIFLS 77

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNY-TYPFVLKACGVLMGLVE 130
           + +P+ ++ N ++RG++ + +P  +L+ + ++++   L  N  TY F + A         
Sbjct: 78  VQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRA 137

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G  IHG+ +  G   ++ + + ++ MY K   +  AR VF+    KD + WN ++ G+ +
Sbjct: 138 GCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197

Query: 191 CGEMGKAREVFDEMPQKDA--ISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS----- 243
                ++ +VF ++  +    +  + ++D       ++   R+    M I  L +     
Sbjct: 198 NEMYVESIQVFRDLINESCTRLDTTTLLD-ILPAVAELQELRL---GMQIHSLATKTGCY 253

Query: 244 -----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
                    I  Y+K G +  A  LF E    ++ +++ MI GY  +G  + +L LF+E+
Sbjct: 254 SHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKEL 313

Query: 299 LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
           +  G +   +     +S     G L L   IH +  +S       V TAL  +Y K   +
Sbjct: 314 MLSGAK---LKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEI 370

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
           + AR++F    +K++ S+N MI+G   NG  E+A+  F +M+      + +    +L AC
Sbjct: 371 ESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSAC 430

Query: 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
           +  G  + G +    + R    E  +   + L+ + ++ G + +A  + + MP K N   
Sbjct: 431 AQLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMP-KKNEVT 488

Query: 479 WGTLL 483
           W T++
Sbjct: 489 WNTMI 493


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 182/542 (33%), Positives = 301/542 (55%), Gaps = 27/542 (4%)

Query: 43  EPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVN 102
            P   + L+    S  +++   A  LF+  +  N ++ N +IR ++ + + + +L  Y  
Sbjct: 33  HPHLCTSLIAQYASLGSIS--HAYALFSTSHSSNVFLWNHIIRAFSNTPHSRNSLRLYSR 90

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           M + G+   N+T+PF+LKACG L     G   H  VV  G+  DVFV N L+ MY + G 
Sbjct: 91  MLQLGIQATNFTFPFLLKACGCLADFELGARAHAHVVVFGYESDVFVANSLMAMYGRFGC 150

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK 222
              +R VFE    +++VSW+ ++  +   G   +   +F          W ++ +G    
Sbjct: 151 FDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLF----------WRMLNEGIAPN 200

Query: 223 KGDISSA--------------RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
           +G I +A              R++ ++    D    N+ +  YA+ G +  A++ F  + 
Sbjct: 201 RGSIVNAMACIHREHEADDFCRVVIDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGIL 260

Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328
           ++++ +W+ MI+ Y Q   P  AL LF++M   G+ PD ++++  I A + + +  L ++
Sbjct: 261 DKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQLARF 320

Query: 329 IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
           +H  + RS     + + TA+ID+Y+KCG+L+ AR+ F  M+ +N+IS++ MI+G GM+G 
Sbjct: 321 VHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHGH 380

Query: 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
           G EAL  F QM+   I  D + F+ VL ACSH GL  EG+  F++M R  G+ P+ EHY+
Sbjct: 381 GREALCLFDQMKAS-IKPDHIAFVMVLSACSHGGLIAEGWECFKAMNRDFGVTPRTEHYA 439

Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508
           C+VDLL RAG L +A   +E MP+ P+  +WG LL ACR H N+  AE     L  L A+
Sbjct: 440 CMVDLLGRAGRLSEAQAFIERMPITPDAGVWGALLGACRIHSNLETAETAARHLFNLDAE 499

Query: 509 DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQ 568
           + G Y+LLSNIYA +G  + A  IR +M+ R ++K  G ++IEI   +  FV+G+  + Q
Sbjct: 500 NPGRYILLSNIYASSGKRKEADDIRALMKSRGVRKTVGHTIIEIKNKVYTFVAGDTSNPQ 559

Query: 569 SE 570
           ++
Sbjct: 560 TD 561


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 180/490 (36%), Positives = 291/490 (59%), Gaps = 41/490 (8%)

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
           + E  +IH  +VK+      F+V  ++ +     H+  A  +F+  E  ++ S+N ++R 
Sbjct: 20  IAELKKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIRT 79

Query: 188 FVECGEMGKAREVFDEM----------------------------------------PQK 207
           +    +   A  VF++M                                        P+ 
Sbjct: 80  YTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKT 139

Query: 208 DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
            AI+ + +ID Y  K GD+S A  ++E M  +D +SWNS+I G+ ++G + +A+++F+EM
Sbjct: 140 HAITENALIDMY-TKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEM 198

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK 327
           P R + SW+ MI+GYA+ G   +AL +FREM   G+ PD ISV+  + ACAQ+GAL++GK
Sbjct: 199 PCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGK 258

Query: 328 WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
           WIH + ++S    +  V  AL++MY KCG +DEA  +F  M +K+VIS++ MI GL  +G
Sbjct: 259 WIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHG 318

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
            G  A++ F  M+  G+  + + F+GVL AC+H+GL  EG R F  M+    +EP++EHY
Sbjct: 319 KGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEHY 378

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
            CLVDLL R+G++EQAL+ +  MPM+P+   W +LL +CR H N+ +A V +E L++L+ 
Sbjct: 379 GCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEIAVVAMEQLLKLEP 438

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDV 567
           ++ G YVLL+NIYA    WE    +RK++R ++IKK  G S+IE++  ++EFVSG+    
Sbjct: 439 EESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLIEVNNLVQEFVSGDDSKP 498

Query: 568 QSEELELVIQ 577
            S+E+  +++
Sbjct: 499 FSQEVFWILK 508



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 126/428 (29%), Positives = 201/428 (46%), Gaps = 56/428 (13%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           L+N  V+ L+       + +I A +    L    F ++++L      N  ++D A  +F 
Sbjct: 6   LENRFVTTLRNCPKIAELKKIHAHIVKLSLSQSNFLVTKMLD--LCDNLSHVDYATMIFQ 63

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM-KRKGLLVDNYTYPFVLKACGVLMGLV 129
           Q+  PN + +N +IR YT +     A++ +  M   K    D +T+PFV+K+C  L+   
Sbjct: 64  QLENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRR 123

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
            G ++H  V K G        N LI MY+KCG M  A  V+E    +D VSWN ++ G V
Sbjct: 124 LGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHV 183

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI----KDLIS-- 243
             G+M  AREVFDEMP +  +SW+ MI+GY  + G  + A  +F  M +     D IS  
Sbjct: 184 RLGQMKSAREVFDEMPCRTIVSWTTMINGY-ARGGCYADALGIFREMQVVGIEPDEISVI 242

Query: 244 ---------------------------------WNSMIDGYAKIGDLVAAQQLFNEMPER 270
                                            +N++++ YAK G +  A  LFN+M E+
Sbjct: 243 SVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEK 302

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWI 329
           +V SWS MI G A HG    A+ +F +M   GV P+ ++ +G +SACA  G  + G ++ 
Sbjct: 303 DVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYF 362

Query: 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEA------------RRIFYSMTKKNVISYN 377
            V      +   +     L+D+  + G +++A             R + S+     I +N
Sbjct: 363 DVMRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHN 422

Query: 378 VMIAGLGM 385
           + IA + M
Sbjct: 423 LEIAVVAM 430


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 178/446 (39%), Positives = 273/446 (61%), Gaps = 37/446 (8%)

Query: 131 GTEIHGEVVKMGFLC-DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
           G  +H   ++ GF   D+FV   L+ MY+K                              
Sbjct: 66  GASLHARALRSGFAAADLFVRTALVEMYAKTA---------------------------- 97

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMID 249
             GE+  AR  FDE P++D    ++M+  Y   +G+++ AR +F+ M  +DL+SWN+MI 
Sbjct: 98  -AGEIALARAAFDEAPRRDVFLCNVMLAAY-VARGEVAEARKVFDGMSGRDLVSWNTMIH 155

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
           GYA  GD+  A+++F+   +R+ FSWS MI  YA+    KEAL L+REM   GV PD IS
Sbjct: 156 GYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCIS 215

Query: 310 VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369
           ++  +SAC+ +GAL +G  +H F++ +R+ +DM + TAL+DMY KCG ++ + ++F++M 
Sbjct: 216 MVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMP 275

Query: 370 KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR 429
            K+V++++ MI GL  +G G +AL  F++M ++G+  +++ F+GVLIAC+H GL  +G +
Sbjct: 276 VKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKK 335

Query: 430 IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
            F SM    G+ P++EHY C+VDLL RAG +E+A+ ++ SM  KP+  +W TLL ACR H
Sbjct: 336 YFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIH 395

Query: 490 QNVTLAEVVVEGLVELKADDC---GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           +NV +AE   E + +LK  D    G YVLLSNIYA A  WE    +RK +R+  I++  G
Sbjct: 396 KNVEIAE---EAMAKLKVLDPLADGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPG 452

Query: 547 RSVIEIDGNIKEFVSGEIFDVQSEEL 572
           RS IE +  + EFVSG+    + EE+
Sbjct: 453 RSSIEWENTVHEFVSGDRSHPRIEEI 478



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 68/144 (47%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  A  +F+     + +  ++MI  Y +    ++AL  +  M+  G+  D  +   VL 
Sbjct: 162 DVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLS 221

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  +  L  G E+H  V       D+ +   L+ MY+KCG +  +  VF    +KD+++
Sbjct: 222 ACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLT 281

Query: 181 WNLVLRGFVECGEMGKAREVFDEM 204
           W+ ++ G    G    A  +F EM
Sbjct: 282 WSSMIIGLANHGLGHDALSLFSEM 305


>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
 gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 214/599 (35%), Positives = 323/599 (53%), Gaps = 50/599 (8%)

Query: 6   AAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL----- 60
           A +  L+   + LL+   +   + QI AQ+              LL S+  PN L     
Sbjct: 31  ARRGDLERDFLFLLKKCISVNQLRQIQAQM--------------LLHSVEKPNFLIPKAV 76

Query: 61  ---NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKA-LSFYVNMKRKGLLVDNYTYP 116
              + + +  LF+   +PN Y  N MIRG T + N  +A LS Y  MK  GL  D +TY 
Sbjct: 77  ELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYN 136

Query: 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK 176
           FV  AC  L  +  G  +H  + K+G   DV + + LI MY+KCG +G AR +F+    +
Sbjct: 137 FVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITER 196

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARIL 232
           D VSWN ++ G+ E G    A ++F +M ++    D  +   M+ G     GD+ + R+L
Sbjct: 197 DTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSML-GACSHLGDLRTGRLL 255

Query: 233 FEHMPIKDLISWNS-----MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN 287
            E M I   I  ++     +I  Y K GDL +A+++FN+M +++  +W+ MI  Y+Q+G 
Sbjct: 256 -EEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGK 314

Query: 288 PKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA 347
             EA  LF EM   GV PD  ++   +SAC  VGAL+LGK I        +  ++ V T 
Sbjct: 315 SSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATG 374

Query: 348 LIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407
           L+DMY KCG ++EA R+F +M  KN  ++N MI      G  +EAL  F +M    +P  
Sbjct: 375 LVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPS 431

Query: 408 DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467
           D+ F+GVL AC H+GL  +G R F  M    G+ PK+EHY+ ++DLLSRAG L++A   +
Sbjct: 432 DITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFM 491

Query: 468 ESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK-ADDCGLYVLLSNIYADAGMW 526
           E  P KP+  +   +L AC   ++V + E  +  L+E+K A + G YV+ SN+ AD  MW
Sbjct: 492 ERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLADMKMW 551

Query: 527 EHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV------------SGEIFDVQSEELE 573
           + + ++R +MR R + K  G S IEI+G + EF+            SG +FD+  EE++
Sbjct: 552 DESAKMRALMRDRGVVKTPGCSWIEIEGELMEFLAGSDYLQCGREDSGSLFDLLVEEMK 610


>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic [Vitis vinifera]
 gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
          Length = 533

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 202/572 (35%), Positives = 318/572 (55%), Gaps = 75/572 (13%)

Query: 8   KFSLKNPLVSLLQISKTTTHILQ-ILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQA 65
           KF   +P +S+L+   TT   LQ I A L    L   P  +S +L    TSP   +++ A
Sbjct: 19  KFISDHPHLSILEKHCTTMKDLQKIHAHLLKTGLAKHPLAVSPVLAFCATSPGG-DINYA 77

Query: 66  ERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDN-----YTYPFVLK 120
             +F QI+ PN +  NT+IRG++QSS P  A+S +++M    L+V +      TYP V K
Sbjct: 78  YLVFTQIHSPNLFSWNTIIRGFSQSSTPHHAISLFIDM----LIVSSVQPHRLTYPSVFK 133

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           A   L     G ++HG V+K+G   D F+                               
Sbjct: 134 AYAQLGLAHYGAQLHGRVIKLGLQFDPFIR------------------------------ 163

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKD 240
            N ++  +  CG + +  + F E                          R+ F      D
Sbjct: 164 -NTIIYMYANCGFLSEMWKAFYE--------------------------RMDF------D 190

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
           +++WNSMI G AK G++  +++LF+EMP RN  SW+ MI GY ++G  +EAL LF +M  
Sbjct: 191 IVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQE 250

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
           + ++P   +++  ++A A++GAL  G+WIH +++++   +++IV  ++IDMY KCGS+ E
Sbjct: 251 ERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGE 310

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           A ++F     K + S+N MI GL MNG   EA++ F+++E   +  DD+ F+GVL AC++
Sbjct: 311 AFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNY 370

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
           SGL  +    F  M +   IEP ++HYSC+VD L RAG LE+A  ++ +MP+ P+  +W 
Sbjct: 371 SGLVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWS 430

Query: 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540
           +LL ACR H NV LA+   + +V+L  +D   YVLLSNIYA +  +E A+  R  M++++
Sbjct: 431 SLLSACRKHGNVELAKRAAKHIVDLDGNDSCGYVLLSNIYAASDQFEEAMEQRLSMKEKQ 490

Query: 541 IKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           I+KE G S+IE++G I EFV+G     Q++E+
Sbjct: 491 IEKEPGCSLIEVNGEIHEFVAGGRLHPQAQEV 522


>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
          Length = 617

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 214/599 (35%), Positives = 323/599 (53%), Gaps = 50/599 (8%)

Query: 6   AAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL----- 60
           A +  L+   + LL+   +   + QI AQ+              LL S+  PN L     
Sbjct: 27  ARRGDLERDFLFLLKKCISVNQLRQIQAQM--------------LLHSVEKPNFLIPKAV 72

Query: 61  ---NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKA-LSFYVNMKRKGLLVDNYTYP 116
              + + +  LF+   +PN Y  N MIRG T + N  +A LS Y  MK  GL  D +TY 
Sbjct: 73  ELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYN 132

Query: 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK 176
           FV  AC  L  +  G  +H  + K+G   DV + + LI MY+KCG +G AR +F+    +
Sbjct: 133 FVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITER 192

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARIL 232
           D VSWN ++ G+ E G    A ++F +M ++    D  +   M+ G     GD+ + R+L
Sbjct: 193 DTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSML-GACSHLGDLRTGRLL 251

Query: 233 FEHMPIKDLISWNS-----MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN 287
            E M I   I  ++     +I  Y K GDL +A+++FN+M +++  +W+ MI  Y+Q+G 
Sbjct: 252 -EEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGK 310

Query: 288 PKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA 347
             EA  LF EM   GV PD  ++   +SAC  VGAL+LGK I        +  ++ V T 
Sbjct: 311 SSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATG 370

Query: 348 LIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407
           L+DMY KCG ++EA R+F +M  KN  ++N MI      G  +EAL  F +M    +P  
Sbjct: 371 LVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPS 427

Query: 408 DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467
           D+ F+GVL AC H+GL  +G R F  M    G+ PK+EHY+ ++DLLSRAG L++A   +
Sbjct: 428 DITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFM 487

Query: 468 ESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK-ADDCGLYVLLSNIYADAGMW 526
           E  P KP+  +   +L AC   ++V + E  +  L+E+K A + G YV+ SN+ AD  MW
Sbjct: 488 ERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLADMKMW 547

Query: 527 EHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV------------SGEIFDVQSEELE 573
           + + ++R +MR R + K  G S IEI+G + EF+            SG +FD+  EE++
Sbjct: 548 DESAKMRALMRDRGVVKTPGCSWIEIEGELMEFLAGSDYLQCGREDSGSLFDLLVEEMK 606


>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
 gi|219884683|gb|ACL52716.1| unknown [Zea mays]
 gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
          Length = 601

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 182/551 (33%), Positives = 305/551 (55%), Gaps = 40/551 (7%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A  LF+ + +P   +    +   ++ S  Q+ +    ++ R+G  + +   P VLK+C +
Sbjct: 31  ARHLFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLHRRGGAIPSGCIPLVLKSCAL 90

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
                +GT+ H   +  G L DVFV   L+  Y+K G+M  A   FE   IKD +  N +
Sbjct: 91  SAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCL 150

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM-------- 236
           + G+   G++ +AR +FD MP+K + SW+ MI  Y    G+   A  LF+ M        
Sbjct: 151 ITGYSRSGDVEEARRLFDSMPRKTSASWNSMIACY-AHGGEFQEALTLFDQMLREGASPN 209

Query: 237 ------------------------------PIKDLISWNSMIDGYAKIGDLVAAQQLFNE 266
                                          ++++I   ++++ Y K   +  A++ F+ 
Sbjct: 210 AITITTVFSICAKTGDLETGRRAKAWVSEEDLQNVIVHTALMEMYVKCRAIDEARREFDR 269

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326
           MP R+V +WS MI GY+ +G P E+L LF  M     +P+ ++++G +SACAQ+G+ +LG
Sbjct: 270 MPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELG 329

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
           + I  +++   + +   + +ALIDMY KCG +  AR +F+ M +K VI++N MI GL +N
Sbjct: 330 EQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRGLALN 389

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRH-CGIEPKLE 445
           GF E+A+  + +M  +G+  +++ FL +L AC+H+GL  +G   FQ MK++     P++E
Sbjct: 390 GFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASPQVE 449

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
           H +C+VDLL ++G L +A   +  M ++PN  +W TLL ACR H +V LA++    LV L
Sbjct: 450 HCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSACRAHADVELAKLAAGKLVVL 509

Query: 506 KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIF 565
           + +   +YVLLSNIYADAG+W     IR +MR + ++K +  S IE+DG +  F+  + +
Sbjct: 510 EPNSSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELDGEVHRFLVQDTY 569

Query: 566 DVQSEELELVI 576
             +S E+  V+
Sbjct: 570 HPRSAEIYNVV 580



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 167/353 (47%), Gaps = 15/353 (4%)

Query: 41  ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFY 100
           I +P  ++ L+   +     ++++A RLF+ + +  +   N+MI  Y      Q+AL+ +
Sbjct: 141 IKDPIPMNCLITGYSRSG--DVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLF 198

Query: 101 VNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC 160
             M R+G   +  T   V   C     L  G      V +   L +V V   L+ MY KC
Sbjct: 199 DQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSEED-LQNVIVHTALMEMYVKC 257

Query: 161 GHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR 220
             +  AR  F+    +D+V+W+ ++ G+   G   ++ E+F+ M   +     + + G  
Sbjct: 258 RAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVL 317

Query: 221 KKKGDISS--------ARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
                + S        + I  + +P+   +  +++ID Y K G +  A+ +F+ M ++ V
Sbjct: 318 SACAQLGSDELGEQIGSYIESQTLPLTSYLG-SALIDMYTKCGHVARARDVFHRMEQKVV 376

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
            +W+ MI G A +G  ++A+ L+ EM+  GV+P+ I+ +  ++AC   G +D G      
Sbjct: 377 IAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQE 436

Query: 333 MKRSRITMDMIVQ--TALIDMYMKCGSLDEARRIFYSM-TKKNVISYNVMIAG 382
           MK+++      V+    ++D+  K G L EA +    M  + N + +  +++ 
Sbjct: 437 MKKNKQHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSA 489


>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 491

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 193/538 (35%), Positives = 299/538 (55%), Gaps = 64/538 (11%)

Query: 18  LLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERLFNQIYQPN 76
           LL   +T + I QI   LT +  + +P+  ++++     S N  ++  A RLF  +   +
Sbjct: 16  LLDKCRTISQIKQIQTHLTVSGTLKDPYAAAKIISFCALSSNQFSLSHAYRLFLGLRHRS 75

Query: 77  TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHG 136
           T++ NT+IR + + + P+KA+  + NM     L +NYTY F+ KAC  L  L  G   H 
Sbjct: 76  TFIWNTVIRAFAEKNEPRKAIMLFKNMLYSNFLPNNYTYSFLFKACTDLNNLYLGLACHC 135

Query: 137 EVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGK 196
           + +K+                              G E  D V  N ++  F   G M  
Sbjct: 136 QSIKL------------------------------GWEFYDFVQ-NGLVHMFAIFGCMDS 164

Query: 197 AREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGD 256
           AR++FD                       +SS R         D+I+W ++I+GY + G 
Sbjct: 165 ARKLFD-----------------------LSSNR---------DVITWTALINGYVRAGQ 192

Query: 257 LVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISA 316
           ++  ++LF++MPERN  SWS MI GY + G  +EAL LF  ML  G  P+   ++ AI+A
Sbjct: 193 VLIGRELFDKMPERNSVSWSAMITGYVRVGFFEEALELFNAMLISGFWPNHAGIVCAINA 252

Query: 317 CAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISY 376
           CA +GALD G+WIH ++KR+R+ +D ++  ALIDMY KCG ++ A  IF  +  ++V  Y
Sbjct: 253 CASLGALDQGRWIHCYIKRNRMDLDRVMGAALIDMYAKCGCIEIACSIFGELRNRDVHVY 312

Query: 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436
             +I+GL  +G    A++ F +M +EG+  +++ F+ VL ACS  GL  +G RIF++M +
Sbjct: 313 TCLISGLANHGQSATAVELFERMHSEGVVPNEVTFVSVLNACSRMGLVDKGLRIFENMSK 372

Query: 437 HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAE 496
             G EP+++HY CLVDLL RAG+LE+A  +V+ MPMKP+  + G LL A R + +V L E
Sbjct: 373 IYGDEPQVQHYGCLVDLLGRAGKLEEAKKLVKEMPMKPDSYVLGALLNASRVYGDVELGE 432

Query: 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDG 554
             VE L +L  D  G++V+LSN+YA A  W+   R+R+ M  +K++K  G S+I++DG
Sbjct: 433 ETVESLAQLSLDHSGVHVVLSNMYASANKWDEVARVRRGMGDKKVRKVPGCSLIKVDG 490


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 179/489 (36%), Positives = 281/489 (57%), Gaps = 40/489 (8%)

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYS--KCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           +IHG+++K G + D    + L+   +    G +  AR+VF+     +   WN ++RG+  
Sbjct: 36  QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSN 95

Query: 191 CGEMGKAREVFDEM-------------------------PQKDAISWSIMIDGY------ 219
             E  +A  ++  M                          +   I   I+  G+      
Sbjct: 96  SKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYT 155

Query: 220 -------RKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
                    K GDI SAR+LF+ +  +D +SWNSMIDGY K G++  A ++FN MPERN+
Sbjct: 156 TNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNI 215

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
            SW+ MI G    G PKEAL LF  M   G++ D ++++  + ACA +G LD GKWIH +
Sbjct: 216 ISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAY 275

Query: 333 MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
           +K+  I +D I+   LIDMY KCG L+EA  +F  M +K V  +  MI+G  ++G G EA
Sbjct: 276 IKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREA 335

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
           L+ F +M+T G+  + + F G+L ACSH+GL  E   +F+SM+R  G +P +EHY C+VD
Sbjct: 336 LEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVD 395

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
           LL RAG L++A  ++E+MP+KPN A+WG LL AC  H N+ L + + + L+++     G 
Sbjct: 396 LLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGR 455

Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           Y+ L++I+A AG W  A R+R+ M+++ + K  G SVI ++G   EF++G+    Q +E+
Sbjct: 456 YIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEI 515

Query: 573 ELVIQSFVK 581
           + +++  V+
Sbjct: 516 DHMLEQIVE 524



 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 131/412 (31%), Positives = 210/412 (50%), Gaps = 40/412 (9%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
           + LLQ       + QI  Q+    LI +    S+LL    SPN+ ++  A  +F++I++P
Sbjct: 22  LHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRP 81

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           NT+M NTMIRGY+ S  P++AL  Y +M    +  + YT+PF+LKAC  +    E  +IH
Sbjct: 82  NTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIH 141

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
             ++KMGF  +++  N L+ +YSK G +  AR +F+  + +D VSWN ++ G+ +CGE+ 
Sbjct: 142 AHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIE 201

Query: 196 KAREVFDEMPQKDAISWSIMIDG--------------YRKKKGDISSARIL--------- 232
            A E+F+ MP+++ ISW+ MI G              +R +   I    +          
Sbjct: 202 MAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACA 261

Query: 233 ---------FEHMPIK------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSI 277
                    + H  IK      D I    +ID YAK GDL  A ++F +M E+ V  W+ 
Sbjct: 262 DLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTA 321

Query: 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337
           MI GYA HG  +EAL  F +M   GV P+ ++  G ++AC+  G +   K +   M+R  
Sbjct: 322 MISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIH 381

Query: 338 ITMDMIVQTA-LIDMYMKCGSLDEARRIFYSM-TKKNVISYNVMIAGLGMNG 387
                I     ++D+  + G L EA  +  +M  K N   +  ++    ++G
Sbjct: 382 GFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHG 433


>gi|147784564|emb|CAN70487.1| hypothetical protein VITISV_008663 [Vitis vinifera]
          Length = 1302

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 185/486 (38%), Positives = 276/486 (56%), Gaps = 23/486 (4%)

Query: 81   NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
            N +I+      NP +A+  YV MKR G   DN+T+P +LKA   L     G  +HG+ +K
Sbjct: 827  NRVIKRRVSQGNPDQAILAYVEMKRVGFHADNFTFPVLLKAASSLSSCCIGFALHGQAMK 886

Query: 141  MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
             GF    FV   L+ MY   G +  A  VFE   +KD+V WN +L  +   G+M  A ++
Sbjct: 887  TGFSGHCFVGTALLDMYXAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASXGQMDNAMKL 946

Query: 201  FDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAA 260
            FD MP KD  S++IMI GY  K G  ++AR +F+ +  KD++SWNSMI     +GD+  A
Sbjct: 947  FDNMPLKDLASFNIMISGY-AKIGRKAAARSIFDRIHAKDIVSWNSMILACTNVGDMGNA 1005

Query: 261  QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
            + LF+ MP++N                   A+ LF EM       D ++V   +SACA +
Sbjct: 1006 RNLFDVMPKKN-------------------AVDLFDEMKAGNHEADHLTVALVLSACAHL 1046

Query: 321  GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMI 380
            G L  G  +HV+ +  R+     V T+LIDMY KCG++  +  +FY    K++  +N +I
Sbjct: 1047 GWLGKGTEMHVYAQDHRLASSPHVATSLIDMYAKCGTIQRSLEVFYKSQVKDIYCWNAII 1106

Query: 381  AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGI 440
            +GL ++G+G  A+K   +M   GI  D++ F+G+L ACSH  L  EG R+F  M++  G+
Sbjct: 1107 SGLALHGYGHAAVKLLDKMRDNGIRPDEITFIGLLSACSHGSLVQEGCRLFDCMEKEFGL 1166

Query: 441  EPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVE 500
             PKLEHY C+VDLL RAG L+ A  ++++MP +P  ++ G LL AC  HQ++   E V++
Sbjct: 1167 PPKLEHYGCMVDLLGRAGFLDPAFQLIKAMPFEPGESILGALLGACVIHQDLETGEKVIB 1226

Query: 501  GLVELKADDC--GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKE 558
             L+  KA     G +++  N+YA  G W+ A R R+ M +  I K  G S IE+DG    
Sbjct: 1227 -LITSKAHHVSDGEFMMFVNLYASCGQWKEANRWRERMNESGIAKTAGGSTIEVDGKFYR 1285

Query: 559  FVSGEI 564
            F++G+I
Sbjct: 1286 FLAGDI 1291



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 100/225 (44%), Gaps = 11/225 (4%)

Query: 275  WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
            W+ +I      GNP +A+  + EM   G   D  +    + A + + +  +G  +H    
Sbjct: 826  WNRVIKRRVSQGNPDQAILAYVEMKRVGFHADNFTFPVLLKAASSLSSCCIGFALHGQAM 885

Query: 335  RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
            ++  +    V TAL+DMY   G++D A ++F  M  K+V+ +N M+A     G  + A+K
Sbjct: 886  KTGFSGHCFVGTALLDMYXAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASXGQMDNAMK 945

Query: 395  CFAQMETEGIPKDDLIFLGVLIAC-SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
             F  M     P  DL    ++I+  +  G       IF  +         +  ++ ++  
Sbjct: 946  LFDNM-----PLKDLASFNIMISGYAKIGRKAAARSIFDRIHAK-----DIVSWNSMILA 995

Query: 454  LSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVV 498
             +  G++  A N+ + MP K  + L+  +        ++T+A V+
Sbjct: 996  CTNVGDMGNARNLFDVMPKKNAVDLFDEMKAGNHEADHLTVALVL 1040



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 69/186 (37%), Gaps = 43/186 (23%)

Query: 62   MDQAERLFNQIYQPNTYMHNTMIRGYTQSSN----------------------------- 92
            MD A +LF+ +   +    N MI GY +                                
Sbjct: 940  MDNAMKLFDNMPLKDLASFNIMISGYAKIGRKAAARSIFDRIHAKDIVSWNSMILACTNV 999

Query: 93   -------------PQK-ALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEV 138
                         P+K A+  +  MK      D+ T   VL AC  L  L +GTE+H   
Sbjct: 1000 GDMGNARNLFDVMPKKNAVDLFDEMKAGNHEADHLTVALVLSACAHLGWLGKGTEMHVYA 1059

Query: 139  VKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAR 198
                      V   LI MY+KCG +  +  VF  S++KD+  WN ++ G    G    A 
Sbjct: 1060 QDHRLASSPHVATSLIDMYAKCGTIQRSLEVFYKSQVKDIYCWNAIISGLALHGYGHAAV 1119

Query: 199  EVFDEM 204
            ++ D+M
Sbjct: 1120 KLLDKM 1125


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 179/489 (36%), Positives = 281/489 (57%), Gaps = 40/489 (8%)

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYS--KCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           +IHG+++K G + D    + L+   +    G +  AR+VF+     +   WN ++RG+  
Sbjct: 36  QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSN 95

Query: 191 CGEMGKAREVFDEM-------------------------PQKDAISWSIMIDGY------ 219
             E  +A  ++  M                          +   I   I+  G+      
Sbjct: 96  SKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYT 155

Query: 220 -------RKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
                    K GDI SAR+LF+ +  +D +SWNSMIDGY K G++  A ++FN MPERN+
Sbjct: 156 TNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNI 215

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
            SW+ MI G    G PKEAL LF  M   G++ D ++++  + ACA +G LD GKWIH +
Sbjct: 216 ISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAY 275

Query: 333 MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
           +K+  I +D I+   LIDMY KCG L+EA  +F  M +K V  +  MI+G  ++G G EA
Sbjct: 276 IKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREA 335

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
           L+ F +M+T G+  + + F G+L ACSH+GL  E   +F+SM+R  G +P +EHY C+VD
Sbjct: 336 LEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVD 395

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
           LL RAG L++A  ++E+MP+KPN A+WG LL AC  H N+ L + + + L+++     G 
Sbjct: 396 LLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGR 455

Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           Y+ L++I+A AG W  A R+R+ M+++ + K  G SVI ++G   EF++G+    Q +E+
Sbjct: 456 YIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEI 515

Query: 573 ELVIQSFVK 581
           + +++  V+
Sbjct: 516 DHMLEQIVE 524



 Score =  221 bits (563), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 132/412 (32%), Positives = 211/412 (51%), Gaps = 40/412 (9%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
           + LLQ       + QI  Q+    LI +    S+LL    SPN+ ++  A  +F++I++P
Sbjct: 22  LHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRP 81

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           NT+M NTMIRGY+ S  P++AL  Y +M    +  + YT+PF+LKAC  +  L E  +IH
Sbjct: 82  NTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIH 141

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
             ++KMGF  +++  N L+ +YSK G +  AR +F+  + +D VSWN ++ G+ +CGE+ 
Sbjct: 142 AHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIE 201

Query: 196 KAREVFDEMPQKDAISWSIMIDG--------------YRKKKGDISSARIL--------- 232
            A E+F+ MP+++ ISW+ MI G              +R +   I    +          
Sbjct: 202 MAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACA 261

Query: 233 ---------FEHMPIK------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSI 277
                    + H  IK      D I    +ID YAK GDL  A ++F +M E+ V  W+ 
Sbjct: 262 DLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTA 321

Query: 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337
           MI GYA HG  +EAL  F +M   GV P+ ++  G ++AC+  G +   K +   M+R  
Sbjct: 322 MISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIH 381

Query: 338 ITMDMIVQTA-LIDMYMKCGSLDEARRIFYSM-TKKNVISYNVMIAGLGMNG 387
                I     ++D+  + G L EA  +  +M  K N   +  ++    ++G
Sbjct: 382 GFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHG 433


>gi|125528817|gb|EAY76931.1| hypothetical protein OsI_04889 [Oryza sativa Indica Group]
          Length = 565

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 169/443 (38%), Positives = 265/443 (59%), Gaps = 8/443 (1%)

Query: 111 DNYTYPFVLKACGVL----MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCA 166
           D+++ PF L A   L    +G           +  G L    V N L+ +Y+KC  +  A
Sbjct: 80  DHFSLPFALNAAASLRLLPLGASLHALALRLALLPGRLP---VANALVDLYAKCDDLPAA 136

Query: 167 RSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDI 226
            +        D VS+N +L        +  A  +F  MP +  +SW+ M+  Y    GD+
Sbjct: 137 HTALADIAAPDAVSFNSLLCAHARLASVPDAESLFAAMPSRTQVSWNAMVVVY-VNAGDV 195

Query: 227 SSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
           SSAR +F+ MP +D  SW+ +I GY K G + +A+++F+ MP +N+ +W+ MI+GYAQ G
Sbjct: 196 SSARRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSG 255

Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
            PKE+L LFREM   G+ PD  +++G ISA +Q+G+ +L  W+  ++ + RI  +  V T
Sbjct: 256 VPKESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLT 315

Query: 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK 406
           AL+DM+ KCG++DEA   F  + + +   Y  +I+GL  +G  + AL+ F +M+ + +  
Sbjct: 316 ALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWP 375

Query: 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466
           D + F+GVL ACSH+GL  +G   +++M ++ G+E + +HY+C+VD+L RAG LE+A  +
Sbjct: 376 DPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFEM 435

Query: 467 VESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMW 526
           V++MPM P+    G LL AC+ H NV +AE+V   L EL+  + G Y++LSNIYA+   W
Sbjct: 436 VQTMPMGPHPGALGALLSACKTHGNVEIAEIVANKLFELEPHNTGNYIMLSNIYAEKEQW 495

Query: 527 EHALRIRKMMRKRKIKKETGRSV 549
           E A RIR +MR R   K+ G S+
Sbjct: 496 EEAERIRSVMRTRVPFKQPGSSM 518



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 136/335 (40%), Gaps = 38/335 (11%)

Query: 58  NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGL-----LVDN 112
           N  ++  A R+F+Q+   ++   + +I GY +  + + A   +  M  K L     +++ 
Sbjct: 191 NAGDVSSARRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMING 250

Query: 113 YTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG 172
           Y    V K         E   +  E+   G   D   + G+I   S+ G    A  V   
Sbjct: 251 YAQSGVPK---------ESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSY 301

Query: 173 SEIKDLVSWNLVLRGFVE----CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS 228
            + K +   + VL   V+    CG + +A   F E+ Q DA  ++ +I G     G    
Sbjct: 302 VDKKRIERNDKVLTALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGL-AAHGHAKL 360

Query: 229 ARILFEHMPIK----DLISWNSMIDGYAKIG------DLVAAQQLFNEMPERNVFSWSIM 278
           A  +FE M  +    D I++  ++   +  G      D   A   +  M ER    ++ +
Sbjct: 361 ALQVFERMQAQSVWPDPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGM-ERRADHYACV 419

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI--HVFMKRS 336
           +D   + G  +EA  + + M   G  P  +  +  +SAC   G +++ + +   +F    
Sbjct: 420 VDMLGRAGRLEEAFEMVQTMP-MGPHPGALGAL--LSACKTHGNVEIAEIVANKLFELEP 476

Query: 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
             T + I+   L ++Y +    +EA RI   M  +
Sbjct: 477 HNTGNYIM---LSNIYAEKEQWEEAERIRSVMRTR 508


>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
 gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
          Length = 517

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 190/508 (37%), Positives = 286/508 (56%), Gaps = 36/508 (7%)

Query: 47  LSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK 106
           L +LL+S  +     M  A ++F+ I +P+ +MHN M+RGY  +  P  A + Y  M   
Sbjct: 34  LRELLLSCVATFRGRMGYARKVFDGIPRPDLFMHNAMVRGYAHAGAPGDAFAVYRRMTEA 93

Query: 107 GLL-VDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGC 165
             L  D +T+ ++L+AC  L G   G ++HG VVK+GFL D +V N LI M++KCG +  
Sbjct: 94  SRLRPDAFTFCYLLRACAGLPGSRAGRQVHGAVVKLGFLKDAYVRNALINMFAKCGDLRV 153

Query: 166 ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGD 225
           A  + + +   D+V+W+ V+ G    G+M  AR++FDE   KD + W++M+  Y  K G+
Sbjct: 154 ASVLLDEAGEGDVVAWSAVIAGHAARGDMAAARKMFDECTHKDIVCWNVMLGAY-AKHGE 212

Query: 226 ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
           + +AR LF+  P KD++SWN++I GYA  G L                            
Sbjct: 213 MENARELFDRAPEKDVVSWNTIITGYAAQGML---------------------------- 244

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH--VFMKRSRITMDMI 343
              K AL +F EM   G  PD  +++  +S CA  G LD G+ IH  + ++R R  + ++
Sbjct: 245 ---KHALEVFDEMRAAGWTPDEATIVSLLSCCANTGLLDAGRMIHHQLHLER-RPWISIV 300

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           V  AL+ MY KCG L  A   F +M   +V ++N +I GL  +G  E++++ F +M  + 
Sbjct: 301 VGNALVSMYAKCGDLHTAVEGFNTMKDTDVWTWNSVIGGLAFHGQAEQSVRFFKKMLEKR 360

Query: 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
           I  +++ FL VL ACSH+GL  +G + F  MK   GIEP   HYSC+VD+L RAG L++A
Sbjct: 361 IHPNEISFLCVLGACSHAGLVEDGQKFFYLMKDRYGIEPNARHYSCIVDMLGRAGLLDEA 420

Query: 464 LNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA 523
             IV +M  +P+  +W TLL ACR H N+TL ++V E L+ +  D    YVLLS IYA +
Sbjct: 421 YAIVSNMRCEPSAVVWRTLLGACRTHGNMTLGKLVREKLLNMNEDASADYVLLSGIYASS 480

Query: 524 GMWEHALRIRKMMRKRKIKKETGRSVIE 551
           G W      R+ M +R I+K  G + I+
Sbjct: 481 GEWLGVETERRSMDRRGIRKAAGYAQID 508


>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 215/576 (37%), Positives = 322/576 (55%), Gaps = 18/576 (3%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIY- 73
           LV L +   ++  + Q+ AQ+     I  P   +  L+S  + +  N   A  LF+ I  
Sbjct: 21  LVFLAKQCSSSKTLQQVHAQMVVKSSIHSP---NNHLLS-KAIHLKNFTYASLLFSHIAP 76

Query: 74  QPNTYMHNTMIRGYTQSSNPQK-ALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
            PN Y  N MIR  T + +    AL+ +  M    L  +N+T+PF   +C  L  L    
Sbjct: 77  HPNDYAFNIMIRALTTTWHHYPLALTLFHRMMSLSLSPNNFTFPFFFLSCANLAVLSPAR 136

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
             H  V K+    D    + LI MYS+CG +  AR VF+    +DLVSWN ++ G+ + G
Sbjct: 137 AAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAG 196

Query: 193 EMGKAREVFDEMPQKDAISWSIM----IDGYRKKKGDISSAR-----ILFEHMPIKDLIS 243
              +A EVF EM ++D      M    + G   + GD+   R     ++   M +   I 
Sbjct: 197 CAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIG 256

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
            +++I  YAK GDL +A+++F+ M  R+V +W+ +I GYAQ+G   EA+ LF  M    V
Sbjct: 257 -SALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCV 315

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
             + I++   +SACA +GALDLGK I  +  +     D+ V TALIDMY KCGSL  A+R
Sbjct: 316 TENKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQR 375

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG--IPKDDLIFLGVLIACSHS 421
           +F  M +KN  S+N MI+ L  +G  +EAL  F  M  EG     +D+ F+G+L AC H+
Sbjct: 376 VFKEMPQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHA 435

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           GL  EGYR+F  M    G+ PK+EHYSC+VDLL+RAG L +A +++E MP KP+    G 
Sbjct: 436 GLVNEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPDKVTLGA 495

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           LL ACR+ +NV + E V+  ++E+   + G Y++ S IYA+  MWE + R+R +MR++ I
Sbjct: 496 LLGACRSKKNVDIGERVIRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGI 555

Query: 542 KKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
            K  G S IE++ ++ EF +G+   + S +L  +I 
Sbjct: 556 TKTPGCSWIEVENHLHEFHAGDGLCLDSIDLSNIID 591


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 191/535 (35%), Positives = 305/535 (57%), Gaps = 26/535 (4%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D+A  +FN++   N+   N ++  Y  +   ++A   + +     L+  N         
Sbjct: 155 VDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWN--------- 205

Query: 122 CGVLMGLVEGTEIHGEVVKMGF----LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
              LMG      + G+  ++ F    + DV   N +I  Y++ G +  A+ +F  S I+D
Sbjct: 206 --CLMGGYVKRNMLGDARQL-FDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRD 262

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMP 237
           + +W  ++ G+V+ G + +AR+ FDEMP K+ IS++ M+ GY + K  + +   LFE MP
Sbjct: 263 VFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGE-LFEAMP 321

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
            +++ SWN+MI GY + G +  A++LF+ MP+R+  SW+ +I GYAQ+G+ +EAL +F E
Sbjct: 322 CRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVE 381

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
           M   G   +  +   A+S CA + AL+LGK +H  + ++       V  AL+ MY KCGS
Sbjct: 382 MKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGS 441

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
            DEA  +F  + +K+V+S+N MIAG   +GFG +AL  F  M+  G+  D++  +GVL A
Sbjct: 442 TDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSA 501

Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
           CSHSGL   G   F SM R   ++P  +HY+C++DLL RAG LE+A N++ +MP  P  A
Sbjct: 502 CSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAA 561

Query: 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537
            WG LL A R H N  L E   E + +++  + G+YVLLSN+YA +G W    ++R  MR
Sbjct: 562 SWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMR 621

Query: 538 KRKIKKETGRSVIEIDGNIKEFVSGEIFDVQS-------EELELVI--QSFVKTT 583
           +  ++K TG S +E+   I  F  G+ F  +        EEL+L +  + +V +T
Sbjct: 622 EAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSST 676



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/460 (28%), Positives = 227/460 (49%), Gaps = 27/460 (5%)

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
           D A R+FN + + ++  +N MI GY +++    A   +  M  + L   N          
Sbjct: 63  DSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLFSWNV--------- 113

Query: 123 GVLMGLVEGTEIHGEVVKMGFLC---DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
            +L G V    + GE  K+  L    DV   N ++  Y++ G +  AR VF     ++ +
Sbjct: 114 -MLTGYVRNRRL-GEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSI 171

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239
           SWN +L  +V  G + +AR +F+     + ISW+ ++ GY K+   +  AR LF+ MP++
Sbjct: 172 SWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNM-LGDARQLFDRMPVR 230

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           D+ISWN+MI GYA++GDL  A++LFNE P R+VF+W+ M+ GY Q+G   EA   F EM 
Sbjct: 231 DVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMP 290

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
            +    + IS    ++   Q   + +   +   M    I+        +I  Y + G + 
Sbjct: 291 VK----NEISYNAMLAGYVQYKKMVIAGELFEAMPCRNIS----SWNTMITGYGQNGGIA 342

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           +AR++F  M +++ +S+  +I+G   NG  EEAL  F +M+ +G   +   F   L  C+
Sbjct: 343 QARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCA 402

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
                  G ++   + +  G E      + L+ +  + G  ++A ++ E +  K ++  W
Sbjct: 403 DIAALELGKQVHGQVVK-AGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEK-DVVSW 460

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLS 517
            T++     H     A V+ E + +  +K D+  +  +LS
Sbjct: 461 NTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLS 500



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/353 (30%), Positives = 170/353 (48%), Gaps = 43/353 (12%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D+   N  I  + + GH   A  VF     +  VS+N ++ G++   +   AR++FD+MP
Sbjct: 45  DIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMP 104

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
           ++D  SW++M+ GY + +  +  A  LF+ MP KD++SWN+M+ GYA+ G +  A+++FN
Sbjct: 105 ERDLFSWNVMLTGYVRNR-RLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFN 163

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLF--------------------REMLCQGVR- 304
           +MP RN  SW+ ++  Y  +G  KEA  LF                    R ML    + 
Sbjct: 164 KMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQL 223

Query: 305 ------PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
                  DVIS    IS  AQVG L   K +      S I  D+   TA++  Y++ G +
Sbjct: 224 FDRMPVRDVISWNTMISGYAQVGDLSQAKRL---FNESPIR-DVFTWTAMVSGYVQNGMV 279

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
           DEAR+ F  M  KN ISYN M+AG         A + F  M    I   + +  G     
Sbjct: 280 DEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGY---- 335

Query: 419 SHSGLATEGYRIFQSM-KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
             +G   +  ++F  M +R C        ++ ++   ++ G  E+ALN+   M
Sbjct: 336 GQNGGIAQARKLFDMMPQRDC------VSWAAIISGYAQNGHYEEALNMFVEM 382



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 179/362 (49%), Gaps = 22/362 (6%)

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           D+V+WN  +   +  G    A  VF+ MP++ ++S++ MI GY +     S AR LF+ M
Sbjct: 45  DIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRN-AKFSLARDLFDKM 103

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
           P +DL SWN M+ GY +   L  A +LF+ MP+++V SW+ M+ GYAQ+G   EA  +F 
Sbjct: 104 PERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFN 163

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
           +M  +    + IS  G ++A    G L   + +      S+   ++I    L+  Y+K  
Sbjct: 164 KMPHR----NSISWNGLLAAYVHNGRLKEARRLF----ESQSNWELISWNCLMGGYVKRN 215

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
            L +AR++F  M  ++VIS+N MI+G    G   +A + F     E   +D   +  ++ 
Sbjct: 216 MLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLF----NESPIRDVFTWTAMVS 271

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
               +G+  E  + F  M     I      Y+ ++    +  ++  A  + E+MP + N+
Sbjct: 272 GYVQNGMVDEARKYFDEMPVKNEIS-----YNAMLAGYVQYKKMVIAGELFEAMPCR-NI 325

Query: 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
           + W T++     +  +  A  + + + +    DC  +  + + YA  G +E AL +   M
Sbjct: 326 SSWNTMITGYGQNGGIAQARKLFDMMPQ---RDCVSWAAIISGYAQNGHYEEALNMFVEM 382

Query: 537 RK 538
           ++
Sbjct: 383 KR 384



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 163/385 (42%), Gaps = 82/385 (21%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++ QA+RLFN+    + +    M+ GY Q+    +A  ++  M  K              
Sbjct: 247 DLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVK-------------- 292

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
                       EI                N ++  Y +   M  A  +FE    +++ S
Sbjct: 293 -----------NEIS--------------YNAMLAGYVQYKKMVIAGELFEAMPCRNISS 327

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK--------------KKGDI 226
           WN ++ G+ + G + +AR++FD MPQ+D +SW+ +I GY +              K+   
Sbjct: 328 WNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGE 387

Query: 227 SSARILFE------------------HMPI------KDLISWNSMIDGYAKIGDLVAAQQ 262
           SS R  F                   H  +            N+++  Y K G    A  
Sbjct: 388 SSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEAND 447

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F  + E++V SW+ MI GYA+HG  ++AL LF  M   GV+PD I+++G +SAC+  G 
Sbjct: 448 VFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGL 507

Query: 323 LDLGKWIHVFMKRS-RITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMI 380
           +D G      M R   +       T +ID+  + G L+EA  +  +M       S+  ++
Sbjct: 508 IDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALL 567

Query: 381 AGLGMNG---FGEEALKCFAQMETE 402
               ++G    GE+A +   +ME +
Sbjct: 568 GASRIHGNTELGEKAAEMVFKMEPQ 592


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 190/535 (35%), Positives = 309/535 (57%), Gaps = 14/535 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A ++F+++ + +    N++I GY  +   +K LS +V M   G+ +D  T   V   
Sbjct: 246 VDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAG 305

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C     +  G  +H   VK  F  +    N L+ MYSKCG +  A++VF     + +VS+
Sbjct: 306 CADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSY 365

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMP 237
             ++ G+   G  G+A ++F+EM ++    D  + + +++   + +      R+   H  
Sbjct: 366 TSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRV---HEW 422

Query: 238 IK------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           IK      D+   N+++D YAK G +  A+ +F+EM  +++ SW+ +I GY+++    EA
Sbjct: 423 IKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEA 482

Query: 292 LYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
           L LF  +L +    PD  +V   + ACA + A D G+ IH ++ R+    D  V  +L+D
Sbjct: 483 LSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVD 542

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           MY KCG+L  A  +F  +  K+++S+ VMIAG GM+GFG+EA+  F QM   GI  D++ 
Sbjct: 543 MYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEIS 602

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
           F+ +L ACSHSGL  EG+R F  M+  C IEP +EHY+C+VD+L+R G+L +A   +E+M
Sbjct: 603 FVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENM 662

Query: 471 PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530
           P+ P+  +WG LL  CR H +V LAE V E + EL+ ++ G YVL++NIYA+A  WE   
Sbjct: 663 PIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVK 722

Query: 531 RIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
           R+RK + +R ++K  G S IEI G +  FV+G+  + ++E +E  ++      IE
Sbjct: 723 RLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIE 777



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 133/442 (30%), Positives = 225/442 (50%), Gaps = 14/442 (3%)

Query: 52  MSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVD 111
           +SL   N  ++ +A R+F+++        N ++    +S +   ++  +  M   G+ +D
Sbjct: 135 LSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMD 194

Query: 112 NYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE 171
           +YT+  V K+   L  +  G ++HG ++K GF     V N L+  Y K   +  AR VF+
Sbjct: 195 SYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFD 254

Query: 172 GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDIS 227
               +D++SWN ++ G+V  G   K   VF +M     + D  +   +  G    +  IS
Sbjct: 255 EMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRL-IS 313

Query: 228 SARILFEHMPIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
             R +   + +K   S      N+++D Y+K GDL +A+ +F EM +R+V S++ MI GY
Sbjct: 314 LGRAV-HSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGY 372

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
           A+ G   EA+ LF EM  +G+ PDV +V   ++ CA+   LD GK +H ++K + +  D+
Sbjct: 373 AREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDI 432

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFA-QMET 401
            V  AL+DMY KCGS+ EA  +F  M  K++IS+N +I G   N +  EAL  F   +E 
Sbjct: 433 FVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEE 492

Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
           +    D+     VL AC+      +G  I   + R+ G        + LVD+ ++ G L 
Sbjct: 493 KRFSPDERTVACVLPACASLSAFDKGREIHGYIMRN-GYFSDRHVANSLVDMYAKCGALL 551

Query: 462 QALNIVESMPMKPNLALWGTLL 483
            A  + + +  K +L  W  ++
Sbjct: 552 LAHMLFDDIASK-DLVSWTVMI 572



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 210/412 (50%), Gaps = 15/412 (3%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           NT +R + +S N + A+       +    +D  T   VL+ C     L +G E+   +  
Sbjct: 65  NTQLRRFCESGNLENAVKLLCVSGKWD--IDPRTLCSVLQLCADSKSLKDGKEVDNFIRG 122

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
            GF+ D  + + L  MY+ CG +  A  VF+  +I+  + WN+++    + G+   +  +
Sbjct: 123 NGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGL 182

Query: 201 FDEM----PQKDAISWSIMIDGYRKKK----GDISSARILFEHMPIKDLISWNSMIDGYA 252
           F +M     + D+ ++S +   +   +    G+     IL      ++ +  NS++  Y 
Sbjct: 183 FKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVG-NSLVAFYL 241

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
           K   + +A+++F+EM ER+V SW+ +I+GY  +G  ++ L +F +ML  G+  D+ +++ 
Sbjct: 242 KNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVS 301

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
             + CA    + LG+ +H    ++  + +      L+DMY KCG LD A+ +F  M+ ++
Sbjct: 302 VFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRS 361

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
           V+SY  MIAG    G   EA+K F +ME EGI  D      VL  C+   L  EG R+ +
Sbjct: 362 VVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHE 421

Query: 433 SMKRH-CGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
            +K +  G +  + +   L+D+ ++ G +++A  +   M +K ++  W T++
Sbjct: 422 WIKENDLGFDIFVSN--ALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTII 470



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 158/330 (47%), Gaps = 35/330 (10%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D A+ +F ++   +   + +MI GY +     +A+  +  M+ +G+  D YT   VL 
Sbjct: 346 DLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLN 405

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C     L EG  +H  + +     D+FV N L+ MY+KCG M  A  VF    +KD++S
Sbjct: 406 CCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIIS 465

Query: 181 WNLVLRGFVECGEMGKAREVFDEM-------PQKDAISWSI-------------MIDGYR 220
           WN ++ G+ +     +A  +F+ +       P +  ++  +              I GY 
Sbjct: 466 WNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYI 525

Query: 221 KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMID 280
            + G  S   +             NS++D YAK G L+ A  LF+++  +++ SW++MI 
Sbjct: 526 MRNGYFSDRHVA------------NSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIA 573

Query: 281 GYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM 340
           GY  HG  KEA+ LF +M   G+  D IS +  + AC+  G +D G W    + R    +
Sbjct: 574 GYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEG-WRFFNIMRHECKI 632

Query: 341 DMIVQ--TALIDMYMKCGSLDEARRIFYSM 368
           +  V+    ++DM  + G L +A R   +M
Sbjct: 633 EPTVEHYACIVDMLARTGDLIKAYRFIENM 662


>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
          Length = 601

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 182/551 (33%), Positives = 305/551 (55%), Gaps = 40/551 (7%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A  LF+ + +P   +    +   ++ S  Q+ +    ++ R+G  + +   P VLK+C +
Sbjct: 31  ARHLFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLHRRGGAIPSGCIPLVLKSCAL 90

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
                +GT+ H   +  G L DVFV   L+  Y+K G+M  A   FE   IKD +  N +
Sbjct: 91  SAASCQGTQTHCHALVRGMLGDVFVQTALVDFYAKNGNMDSAVMAFEEMPIKDPIPMNCL 150

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM-------- 236
           + G+   G++ +AR +FD MP+K + SW+ MI  Y    G+   A  LF+ M        
Sbjct: 151 IIGYSRSGDVEEARRLFDSMPRKTSASWNSMIACY-AHGGEFQEALTLFDQMLREGASPN 209

Query: 237 ------------------------------PIKDLISWNSMIDGYAKIGDLVAAQQLFNE 266
                                          ++++I   ++++ Y K   +  A++ F+ 
Sbjct: 210 AITITTVFSICAKTGDLETGRRAKAWVSEEDLQNVIVHTALMEMYVKCRAIDEARREFDR 269

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326
           MP R+V +WS MI GY+ +G P E+L LF  M     +P+ ++++G +SACAQ+G+ +LG
Sbjct: 270 MPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELG 329

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
           + I  +++   + +   + +ALIDMY KCG +  AR +F+ M +K VI++N MI GL +N
Sbjct: 330 EQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRGLALN 389

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRH-CGIEPKLE 445
           GF E+A+  + +M  +G+  +++ FL +L AC+H+GL  +G   FQ MK++     P++E
Sbjct: 390 GFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASPQVE 449

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
           H +C+VDLL ++G L +A   +  M ++PN  +W TLL ACR H +V LA++    LV L
Sbjct: 450 HCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSACRAHADVELAKLAAGKLVVL 509

Query: 506 KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIF 565
           + +   +YVLLSNIYADAG+W     IR +MR + ++K +  S IE+DG +  F+  + +
Sbjct: 510 EPNSSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELDGEVHRFLVQDTY 569

Query: 566 DVQSEELELVI 576
             +S E+  V+
Sbjct: 570 HPRSAEIYNVV 580



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 168/353 (47%), Gaps = 15/353 (4%)

Query: 41  ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFY 100
           I +P  ++ L++  +     ++++A RLF+ + +  +   N+MI  Y      Q+AL+ +
Sbjct: 141 IKDPIPMNCLIIGYSRSG--DVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLF 198

Query: 101 VNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC 160
             M R+G   +  T   V   C     L  G      V +   L +V V   L+ MY KC
Sbjct: 199 DQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSEED-LQNVIVHTALMEMYVKC 257

Query: 161 GHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR 220
             +  AR  F+    +D+V+W+ ++ G+   G   ++ E+F+ M   +     + + G  
Sbjct: 258 RAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVL 317

Query: 221 KKKGDISS--------ARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
                + S        + I  + +P+   +  +++ID Y K G +  A+ +F+ M ++ V
Sbjct: 318 SACAQLGSDELGEQIGSYIESQTLPLTSYLG-SALIDMYTKCGHVARARDVFHRMEQKVV 376

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
            +W+ MI G A +G  ++A+ L+ EM+  GV+P+ I+ +  ++AC   G +D G      
Sbjct: 377 IAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQE 436

Query: 333 MKRSRITMDMIVQ--TALIDMYMKCGSLDEARRIFYSM-TKKNVISYNVMIAG 382
           MK+++      V+    ++D+  K G L EA +    M  + N + +  +++ 
Sbjct: 437 MKKNKQHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSA 489


>gi|255540011|ref|XP_002511070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550185|gb|EEF51672.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 551

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 195/579 (33%), Positives = 318/579 (54%), Gaps = 74/579 (12%)

Query: 9   FSLKNPLVSLLQISKTTTHILQILAQLTTNDLIT-----EPFTLSQLLMSLTSPNTLN-- 61
           ++L + + +L++  KT   + Q+ AQ  T  L++      P  L+++L +LT+  T    
Sbjct: 24  YNLSHSIYTLIRQCKTINQLYQVHAQAFTKGLLSLTACSSPQILTKILYALTTIPTPKSS 83

Query: 62  ---MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFV 118
              +  A   F+ I  P+T+ +N +IR +T  S+   AL F++ M+R  +  D ++YPF 
Sbjct: 84  FSLLHYAVSTFDNIQNPSTFCYNVIIRLHTLHSSALSALHFFLQMRRFSVPPDFHSYPFA 143

Query: 119 LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDL 178
           LKAC  L  L     +H +V K GF+ D++V+N LI +YS                    
Sbjct: 144 LKACAHLRVLSLAQCLHSQVFKFGFVSDLYVINSLIHVYS-------------------- 183

Query: 179 VSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI 238
                      +C  +  A +VFDE                       SS R        
Sbjct: 184 ---------LFDC--LNYACQVFDE-----------------------SSDR-------- 201

Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
            D++S+N+++DG+ K G+ V A+++F+ MP R+  SW  +I GYAQ     EA+ LF  M
Sbjct: 202 -DVVSYNALVDGFVKAGEFVKAREIFDLMPMRDSVSWGSLIAGYAQGSYCNEAIGLFDLM 260

Query: 299 LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
           +   + PD I+++ A+SACAQ+G L+ GK IH ++K++RI  D  + T L+D Y K G +
Sbjct: 261 MGLKLEPDNIALVSALSACAQLGELEKGKQIHDYIKKNRIQADSFLSTGLVDFYAKSGCI 320

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
           D A ++F     K++I++N M+ G+ M+G     L  F++M   GI  D + FLGVL+ C
Sbjct: 321 DTAIKVFELSPDKSLITWNAMLIGIAMHGNSHLLLNYFSRMMEAGIKPDGISFLGVLVGC 380

Query: 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
           SH GL  E  ++F  M+   G+  +L+HY C+ DLL+RAG +++A+ + + +PM  ++ +
Sbjct: 381 SHGGLVDEAKKLFDEMESIYGVRRELKHYGCMADLLARAGLIKEAVELTKGLPMGGDIFV 440

Query: 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK-MMR 537
           W  LL  CR H N+ +AE   + ++ELK +D G+Y +L+N+YA+A  WE  ++IR+ M  
Sbjct: 441 WSGLLGGCRIHGNIEIAEQAAKQVMELKPEDGGVYSILANVYANADRWEDVVKIRRSMSS 500

Query: 538 KRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
            R +KK  GRS I++ G   EF++GE    QS E+ +V+
Sbjct: 501 NRAVKKNAGRSSIQLGGLTHEFLAGESLHAQSSEIYMVL 539


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 184/520 (35%), Positives = 297/520 (57%), Gaps = 8/520 (1%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +M+ A  +F+ +   N      MI G+ Q     +A  F+  M   G+  +  T+  +L 
Sbjct: 362 SMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILG 421

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC     L  G +I   +++ G+  D  V   L+ MY+KCG +  A  VFE    +++V+
Sbjct: 422 ACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVA 481

Query: 181 WNLVLRGFVECGEMGKAREVFD----EMPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           WN ++  +V+  +   A   F     E  + ++ +++ +++  +          + F  M
Sbjct: 482 WNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIM 541

Query: 237 PI---KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
                 DL   N+++  +   GDL++A+ LFN+MP+R++ SW+ +I G+ QHG  + A  
Sbjct: 542 KAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFD 601

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
            F+ M   G++PD I+  G ++ACA   AL  G+ +H  +  +    D++V T LI MY 
Sbjct: 602 YFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYT 661

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCGS+++A ++F+ + KKNV S+  MIAG   +G G+EAL+ F QM+ EG+  D + F+G
Sbjct: 662 KCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVG 721

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
            L AC+H+GL  EG   FQSMK    IEP++EHY C+VDL  RAG L +A+  +  M ++
Sbjct: 722 ALSACAHAGLIEEGLHHFQSMKEF-NIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVE 780

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
           P+  +WG LL AC+ H NV LAE   +  +EL  +D G++V+LSNIYA AGMW+   ++R
Sbjct: 781 PDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMR 840

Query: 534 KMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELE 573
           K+M  R + K+ G+S IE+DG +  F S +    Q+EE+ 
Sbjct: 841 KVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIH 880



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/441 (28%), Positives = 217/441 (49%), Gaps = 19/441 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N   A+++F+ + + + Y  N ++ GY Q    ++A   +  M +  +  D  T+  +L 
Sbjct: 160 NTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLN 219

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC     + +G E++  ++K G+  D+FV   LI M+ KCG +G A  VF+    +DLV+
Sbjct: 220 ACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVT 279

Query: 181 WNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           W  ++ G    G   +A  +F  M     Q D +++  ++      +      ++   H 
Sbjct: 280 WTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKV---HA 336

Query: 237 PIKDLISWNS-------MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
            +K+ + W++       ++  Y K G +  A ++F+ +  RNV SW+ MI G+AQHG   
Sbjct: 337 RMKE-VGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRID 395

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           EA   F +M+  G+ P+ ++ M  + AC+   AL  G+ I   +  +    D  V+TAL+
Sbjct: 396 EAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALL 455

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
            MY KCGSL +A R+F  ++K+NV+++N MI     +   + AL  F  +  EGI  +  
Sbjct: 456 SMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSS 515

Query: 410 IFLGVLIACSHSGLATEGYRI-FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468
            F  +L  C  S     G  + F  MK   G+E  L   + LV +    G+L  A N+  
Sbjct: 516 TFTSILNVCKSSDSLELGKWVHFLIMK--AGLESDLHVSNALVSMFVNCGDLMSAKNLFN 573

Query: 469 SMPMKPNLALWGTLLLACRNH 489
            MP K +L  W T++     H
Sbjct: 574 DMP-KRDLVSWNTIIAGFVQH 593



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/438 (28%), Positives = 225/438 (51%), Gaps = 13/438 (2%)

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           +T   N ++   +++    +A+     +    + +   TY  +L+ C     L +G  I+
Sbjct: 74  DTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIY 133

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
             + K G   D+F+ N LI MY+KCG+   A+ +F+    KD+ SWNL+L G+V+ G   
Sbjct: 134 NHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYE 193

Query: 196 KAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMPIK-----DLISWNS 246
           +A ++ ++M Q     D  ++  M++     + ++   R L+ ++ +K     DL    +
Sbjct: 194 EAFKLHEQMVQDSVKPDKRTFVSMLNACADAR-NVDKGRELY-NLILKAGWDTDLFVGTA 251

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           +I+ + K GD+  A ++F+ +P R++ +W+ MI G A+HG  K+A  LF+ M  +GV+PD
Sbjct: 252 LINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPD 311

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
            ++ +  + AC    AL+ GK +H  MK      ++ V TA++ MY KCGS+++A  +F 
Sbjct: 312 KVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFD 371

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            +  +NV+S+  MIAG   +G  +EA   F +M   GI  + + F+ +L ACS       
Sbjct: 372 LVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKR 431

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G +I Q      G        + L+ + ++ G L+ A  + E +  K N+  W  ++ A 
Sbjct: 432 GQQI-QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAY 489

Query: 487 RNHQNVTLAEVVVEGLVE 504
             H+    A    + L++
Sbjct: 490 VQHEQYDNALATFQALLK 507



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 185/346 (53%), Gaps = 23/346 (6%)

Query: 173 SEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK----------K 222
           ++IKD    N VL    + G+  +A +V + +        S  I  YR+          K
Sbjct: 70  ADIKDTQKANAVLNRLSKAGQFNEAMQVLERVD-------SSHIQIYRQTYSALLQLCIK 122

Query: 223 KGDISSARILFEHMPIK----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM 278
             ++     ++ H+       D+   N++I+ YAK G+ ++A+Q+F++M E++V+SW+++
Sbjct: 123 FKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLL 182

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338
           + GY QHG  +EA  L  +M+   V+PD  + +  ++ACA    +D G+ ++  + ++  
Sbjct: 183 LGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGW 242

Query: 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
             D+ V TALI+M++KCG + +A ++F ++  ++++++  MI GL  +G  ++A   F +
Sbjct: 243 DTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQR 302

Query: 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458
           ME EG+  D + F+ +L AC+H     +G ++   MK   G + ++   + ++ + ++ G
Sbjct: 303 MEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKE-VGWDTEIYVGTAILSMYTKCG 361

Query: 459 ELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE 504
            +E AL + + +  + N+  W  ++     H  +  A +    ++E
Sbjct: 362 SMEDALEVFDLVKGR-NVVSWTAMIAGFAQHGRIDEAFLFFNKMIE 406



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 78/150 (52%)

Query: 58  NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF 117
           N  ++  A+ LFN + + +    NT+I G+ Q    Q A  ++  M+  G+  D  T+  
Sbjct: 561 NCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTG 620

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           +L AC     L EG  +H  + +  F CDV V  GLI MY+KCG +  A  VF     K+
Sbjct: 621 LLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKN 680

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQK 207
           + SW  ++ G+ + G   +A E+F +M Q+
Sbjct: 681 VYSWTSMIAGYAQHGRGKEALELFYQMQQE 710


>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 579

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 190/533 (35%), Positives = 311/533 (58%), Gaps = 10/533 (1%)

Query: 35  LTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQ 94
           LTT     +  +++QL+ S    N  N+  A  +F ++ Q +    N+MI  Y++++ P 
Sbjct: 9   LTTGLFFNDANSIAQLIASYGRIN--NIIPARNVFEKMPQRSINAWNSMIIAYSRTNYPD 66

Query: 95  KALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLI 154
           + L+ Y  M  +G+  D+ T+   LKAC  LM L  G  I  + V  G+  DVFVV+ ++
Sbjct: 67  EVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVSSVL 126

Query: 155 GMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSI 214
            +Y+K G M  A+ VF+    +D+VSW  ++ GF + G    A +++  M ++      +
Sbjct: 127 NLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGV 186

Query: 215 MIDGYRK---KKGDISSARILFEHMPIKDL----ISWNSMIDGYAKIGDLVAAQQLFNEM 267
           ++ G  +     GD      +  HM  +++    +   S+ID YAK G L  A ++F  +
Sbjct: 187 VMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGI 246

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK 327
           P ++V SW  +I G+AQ+G   + L    EM   G +PD++S++ ++SACAQVG L +GK
Sbjct: 247 PYKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGK 306

Query: 328 WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
            +H  + + R+ +D +  TALIDMY KCG+L  AR +F  +  +++I +N MI+  G++G
Sbjct: 307 SLHGHIVK-RLYLDKVSGTALIDMYAKCGALTFARALFDQIEPRDLILWNAMISSYGIHG 365

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
            G EAL  F +M+   I  D   F  +L ACSHSGL  EG   F  +     I+P  +HY
Sbjct: 366 DGIEALSLFLKMKETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSKIQPSEKHY 425

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
           +C+VDLLSRAG++E+A  ++ESM +KP LA+W  LL  C NH+N+ + E+V + ++E   
Sbjct: 426 ACMVDLLSRAGQVEEAYQLIESMHIKPGLAIWVALLSGCLNHKNLLIGEMVAKKILESNP 485

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
           DD G+YVL+SN ++ A  W+ A   RK+M+   ++K  G S +E++G+++ F+
Sbjct: 486 DDLGIYVLVSNFFSMAKKWDDAAVFRKIMKNTGMRKVPGYSAVEVNGDLQAFL 538



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 148/273 (54%), Gaps = 6/273 (2%)

Query: 229 ARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNP 288
           A IL   +   D  S   +I  Y +I +++ A+ +F +MP+R++ +W+ MI  Y++   P
Sbjct: 6   ALILTTGLFFNDANSIAQLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYSRTNYP 65

Query: 289 KEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTAL 348
            E L L+  M+ +G++PD  +    + AC+ +  LD+G+ I           D+ V +++
Sbjct: 66  DEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVSSV 125

Query: 349 IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD 408
           +++Y K G +D+A+ +F  M K++V+S+  MI G   +G   +A+  +  M+ E    D 
Sbjct: 126 LNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDG 185

Query: 409 LIFLGVLIACSHSGLATEGYRIFQSM-KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467
           ++ +G++ AC+  G +  G  +   M +R   ++  L+  + L+D+ ++ G+LE A  + 
Sbjct: 186 VVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQ--TSLIDMYAKNGKLELASRVF 243

Query: 468 ESMPMKPNLALWGTLL--LACRNHQNVTLAEVV 498
           E +P K  ++ WG L+   A     N TLA +V
Sbjct: 244 EGIPYKSVIS-WGALISGFAQNGFANKTLASLV 275


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 190/535 (35%), Positives = 309/535 (57%), Gaps = 14/535 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A ++F+++ + +    N++I GY  +   +K LS +V M   G+ +D  T   V   
Sbjct: 95  VDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAG 154

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C     +  G  +H   VK  F  +    N L+ MYSKCG +  A++VF     + +VS+
Sbjct: 155 CADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSY 214

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMP 237
             ++ G+   G  G+A ++F+EM ++    D  + + +++   + +      R+   H  
Sbjct: 215 TSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRV---HEW 271

Query: 238 IK------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           IK      D+   N+++D YAK G +  A+ +F+EM  +++ SW+ +I GY+++    EA
Sbjct: 272 IKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEA 331

Query: 292 LYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
           L LF  +L +    PD  +V   + ACA + A D G+ IH ++ R+    D  V  +L+D
Sbjct: 332 LSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVD 391

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           MY KCG+L  A  +F  +  K+++S+ VMIAG GM+GFG+EA+  F QM   GI  D++ 
Sbjct: 392 MYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEIS 451

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
           F+ +L ACSHSGL  EG+R F  M+  C IEP +EHY+C+VD+L+R G+L +A   +E+M
Sbjct: 452 FVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENM 511

Query: 471 PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530
           P+ P+  +WG LL  CR H +V LAE V E + EL+ ++ G YVL++NIYA+A  WE   
Sbjct: 512 PIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVK 571

Query: 531 RIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
           R+RK + +R ++K  G S IEI G +  FV+G+  + ++E +E  ++      IE
Sbjct: 572 RLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIE 626



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/427 (30%), Positives = 218/427 (51%), Gaps = 15/427 (3%)

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           F+++        N ++    +S +   ++  +  M   G+ +D+YT+  V K+   L  +
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
             G ++HG ++K GF     V N L+  Y K   +  AR VF+    +D++SWN ++ G+
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 189 VECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS- 243
           V  G   K   VF +M     + D  +   +  G    +  IS  R +   + +K   S 
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSR-LISLGRAV-HSIGVKACFSR 178

Query: 244 ----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
                N+++D Y+K GDL +A+ +F EM +R+V S++ MI GYA+ G   EA+ LF EM 
Sbjct: 179 EDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME 238

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
            +G+ PDV +V   ++ CA+   LD GK +H ++K + +  D+ V  AL+DMY KCGS+ 
Sbjct: 239 EEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQ 298

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFA-QMETEGIPKDDLIFLGVLIAC 418
           EA  +F  M  K++IS+N +I G   N +  EAL  F   +E +    D+     VL AC
Sbjct: 299 EAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPAC 358

Query: 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
           +      +G  I   + R+ G        + LVD+ ++ G L  A  + + +  K +L  
Sbjct: 359 ASLSAFDKGREIHGYIMRN-GYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASK-DLVS 416

Query: 479 WGTLLLA 485
           W T+++A
Sbjct: 417 W-TVMIA 422



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 158/330 (47%), Gaps = 35/330 (10%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D A+ +F ++   +   + +MI GY +     +A+  +  M+ +G+  D YT   VL 
Sbjct: 195 DLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLN 254

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C     L EG  +H  + +     D+FV N L+ MY+KCG M  A  VF    +KD++S
Sbjct: 255 CCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIIS 314

Query: 181 WNLVLRGFVECGEMGKAREVFDEM-------PQKDAISWSI-------------MIDGYR 220
           WN ++ G+ +     +A  +F+ +       P +  ++  +              I GY 
Sbjct: 315 WNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYI 374

Query: 221 KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMID 280
            + G  S   +             NS++D YAK G L+ A  LF+++  +++ SW++MI 
Sbjct: 375 MRNGYFSDRHVA------------NSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIA 422

Query: 281 GYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM 340
           GY  HG  KEA+ LF +M   G+  D IS +  + AC+  G +D G W    + R    +
Sbjct: 423 GYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEG-WRFFNIMRHECKI 481

Query: 341 DMIVQ--TALIDMYMKCGSLDEARRIFYSM 368
           +  V+    ++DM  + G L +A R   +M
Sbjct: 482 EPTVEHYACIVDMLARTGDLIKAYRFIENM 511


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 201/569 (35%), Positives = 316/569 (55%), Gaps = 22/569 (3%)

Query: 27  HILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRG 86
           H L + +    ++ +     L++L  +L+  N      A ++F+ +  P+T + NT++ G
Sbjct: 146 HALAVASGFAADNFVAS--ALAKLYFTLSRGN-----DARKVFDAVPSPDTVLWNTLLAG 198

Query: 87  YTQSSNPQKALSFYVNMKRKG-LLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC 145
            + S    +AL  +V M   G +  D+ T   VL A   +     G  +H    K G   
Sbjct: 199 LSGS----EALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQ 254

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDE-- 203
              VV GLI +Y+KCG M CAR +F+  E  DLV++N ++ G+   G +G + E+F E  
Sbjct: 255 HEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELV 314

Query: 204 -MPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDG-----YAKIGDL 257
            M  + + S  + +       G    A  L  H+ +K  +  N+ +       Y +  D+
Sbjct: 315 GMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHV-VKAGLDANAPVSTALTTLYCRFNDM 373

Query: 258 VAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISAC 317
            +A++ F+ MPE+ + SW+ MI GYAQ+G  + A+ LF++M    VRP+ +++  A+SAC
Sbjct: 374 DSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSAC 433

Query: 318 AQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYN 377
           AQ+GAL LGKW+H  +   ++ +++ V TALIDMY+KCGS+ EAR IF SM  KNV+S+N
Sbjct: 434 AQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWN 493

Query: 378 VMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRH 437
           VMI+G G++G G EALK +  M    +      FL VL ACSH GL  EG  +F+SM   
Sbjct: 494 VMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSD 553

Query: 438 CGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP-NLALWGTLLLACRNHQNVTLAE 496
            GI P +EH +C+VDLL RAG+L++A  ++   P       +WG LL AC  H++  LA+
Sbjct: 554 YGITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAK 613

Query: 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNI 556
           +  + L EL+ ++ G YVLLSN+Y     +  A  +R+  + RK+ K  G ++IEI    
Sbjct: 614 LASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRP 673

Query: 557 KEFVSGEIFDVQSEELELVIQSFVKTTIE 585
             F++G+    QS+ + L ++      IE
Sbjct: 674 HVFMAGDRAHPQSDAIYLYLEKLTAKMIE 702



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 7/158 (4%)

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
           + +H     S    D  V +AL  +Y      ++AR++F ++   + + +N ++AGL   
Sbjct: 143 RPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLS-- 200

Query: 387 GFGEEALKCFAQMETEG-IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
             G EAL+ F +M   G +  D      VL A +     T G R   +    CG+     
Sbjct: 201 --GSEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMG-RCVHAFGEKCGLAQHEH 257

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             + L+ L ++ G++E A ++ + M   P+L  +  L+
Sbjct: 258 VVTGLISLYAKCGDMECARHLFDRME-GPDLVTYNALI 294


>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 541

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 203/583 (34%), Positives = 316/583 (54%), Gaps = 81/583 (13%)

Query: 10  SLKNPLVSLLQISKTTTHILQILAQLTTNDLI---TEPFTLSQLLMSLTSPNTLNMDQAE 66
           +LKN L +L++  K    I  I   +  + ++    + +  ++LL   +  N  + + A 
Sbjct: 17  TLKNTLSTLIEQCKNLKEIKIIHTHILKSPILHTRDQYYLFTRLLYFCSFSNYASFNYAN 76

Query: 67  RLFNQIYQPNTYMHNTMIRGY------TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            +F+ I  P   ++N MIR Y        S+   KAL  Y  M  KG++ +N T+PF++K
Sbjct: 77  NVFHMIKYPELRVYNIMIRSYGCIEGGDDSNCCYKALMLYKQMLNKGIVPNNLTFPFLVK 136

Query: 121 ACGVLM-GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
            C  L  G   G  IH  V+K GFL DVFV N LI +                       
Sbjct: 137 GCSRLQYGGTVGEVIHAHVLKFGFLNDVFVGNSLISL----------------------- 173

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239
                   F+  G    AR+VFDEM                                 ++
Sbjct: 174 --------FMNFGLSKNARKVFDEMF--------------------------------VR 193

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM- 298
           D++SWNSM+ GY + G++  A  LF +M  RN+ +W+ +I G  Q G+ KE+L +F EM 
Sbjct: 194 DVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIFHEMQ 253

Query: 299 LCQG---VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
              G   V+PD I++   +SACA +G++D GKW+H +++++ I  D+++ TAL++MY KC
Sbjct: 254 FLSGDDVVKPDKITIASVLSACALLGSIDHGKWVHAYLRKNDIECDVVIGTALVNMYGKC 313

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
           G + +A  IF  M +K+  ++  MI+   ++GFG++A  CF +ME  G+  + + F+G+L
Sbjct: 314 GDVQQAIEIFNDMPEKDASAWTAMISVFALHGFGKKAFDCFLEMEKAGVKPNHVTFVGLL 373

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
            ACSHSGL  +G   F  MKR   IEP++ HY+C+VD+LSRA   ++AL ++ SMPMKP+
Sbjct: 374 SACSHSGLVEQGRCCFDVMKRVYSIEPQIYHYACMVDILSRARLFDEALFLIRSMPMKPD 433

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535
           + +WG LL  C+ H N+ L E V   L++L+  +   Y+ L +IY  AG ++ A RIR  
Sbjct: 434 VYVWGALLGGCQMHGNIKLGEKVAHYLIDLEPHNHAFYINLCDIYVKAGKYDAAKRIRNS 493

Query: 536 MRKRKIK-KETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           M++R I+ K  G S+IEI+G ++EF  GEI     +EL LV+ 
Sbjct: 494 MKERGIETKIPGCSIIEINGVVQEFSVGEI---PMKELPLVLD 533


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 191/526 (36%), Positives = 307/526 (58%), Gaps = 14/526 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ A +LF+++   +    N+MI GY  +   +K L  +  M   G+  D  T   V+  
Sbjct: 201 VESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAG 260

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C     L+ G  +HG  +K  F  ++ + N L+ MYSK G++  A  VFE    + +VSW
Sbjct: 261 CSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSW 320

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMI----------DGYRKKKGDISSARI 231
             ++ G+   G    +  +F EM +K+ IS  I             G  +   D+ +   
Sbjct: 321 TSMIAGYAREGLSDMSVRLFHEM-EKEGISPDIFTITTILHACACTGLLENGKDVHN--Y 377

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           + E+    DL   N+++D YAK G +  A  +F+EM  +++ SW+ MI GY+++  P EA
Sbjct: 378 IKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEA 437

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           L LF EM     +P+ I++   + ACA + AL+ G+ IH  + R+  ++D  V  AL+DM
Sbjct: 438 LNLFVEMQYNS-KPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDM 496

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y+KCG+L  AR +F  + +K+++S+ VMIAG GM+G+G EA+  F +M   GI  D++ F
Sbjct: 497 YLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSF 556

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           + +L ACSHSGL  EG+  F  M+ +C IEPK EHY+C+VDLL+RAG L +A   ++ MP
Sbjct: 557 ISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMP 616

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           ++P+  +WG LL  CR + +V LAE V E + EL+ ++ G YVLL+NIYA+A  WE   +
Sbjct: 617 IEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKK 676

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           +R+ + +R ++K  G S IEI G +  FV+G+     + ++EL+++
Sbjct: 677 LRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLK 722



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 125/427 (29%), Positives = 199/427 (46%), Gaps = 61/427 (14%)

Query: 114 TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS 173
           TY  VL+ C  L  + +G  IH  +       D  + + L+ MY  CG +   R +F+  
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 174 EIKDLVSWNLVLRGFVECG-------------EMG-----KAREVFDEMPQKDAISWSIM 215
             + +  WNL++ G+ + G             E+G      AR++FDE+  +D ISW+ M
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSM 222

Query: 216 IDGYRKKKGDISSARILFEHMPI------------------------------------- 238
           I GY    G       LFE M +                                     
Sbjct: 223 ISGY-VSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKAS 281

Query: 239 --KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
             K+L   N ++D Y+K G+L +A Q+F  M ER+V SW+ MI GYA+ G    ++ LF 
Sbjct: 282 FGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFH 341

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
           EM  +G+ PD+ ++   + ACA  G L+ GK +H ++K +++  D+ V  AL+DMY KCG
Sbjct: 342 EMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCG 401

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
           S+ +A  +F  M  K+++S+N MI G   N    EAL  F +M+    P + +    +L 
Sbjct: 402 SMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSKP-NSITMACILP 460

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
           AC+       G  I   + R+ G        + LVD+  + G L  A  + + +P K +L
Sbjct: 461 ACASLAALERGQEIHGHILRN-GFSLDRHVANALVDMYLKCGALGLARLLFDMIPEK-DL 518

Query: 477 ALWGTLL 483
             W  ++
Sbjct: 519 VSWTVMI 525



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 172/333 (51%), Gaps = 12/333 (3%)

Query: 45  FTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMK 104
            TL+  L+ + S +  N++ A ++F  + + +     +MI GY +      ++  +  M+
Sbjct: 286 LTLNNCLLDMYSKSG-NLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEME 344

Query: 105 RKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG 164
           ++G+  D +T   +L AC     L  G ++H  + +     D+FV N L+ MY+KCG MG
Sbjct: 345 KEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMG 404

Query: 165 CARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM---PQKDAISWSIMIDGYRK 221
            A SVF   ++KD+VSWN ++ G+ +     +A  +F EM    + ++I+ + ++     
Sbjct: 405 DAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSKPNSITMACILPACAS 464

Query: 222 ----KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSI 277
               ++G      IL     +   ++ N+++D Y K G L  A+ LF+ +PE+++ SW++
Sbjct: 465 LAALERGQEIHGHILRNGFSLDRHVA-NALVDMYLKCGALGLARLLFDMIPEKDLVSWTV 523

Query: 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337
           MI GY  HG   EA+  F EM   G+ PD +S +  + AC+  G LD G W    M R+ 
Sbjct: 524 MIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEG-WGFFNMMRNN 582

Query: 338 ITMDMIVQ--TALIDMYMKCGSLDEARRIFYSM 368
             ++   +    ++D+  + G+L +A +    M
Sbjct: 583 CCIEPKSEHYACIVDLLARAGNLSKAYKFIKMM 615



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 178/387 (45%), Gaps = 67/387 (17%)

Query: 156 MYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIM 215
           +Y  C  +G +    E  + K +  +N+ +  F E G + +A E+ ++ P+ D     + 
Sbjct: 47  LYHSCATIGTSVLPSETIDCK-ITDYNIEICRFCELGNLRRAMELINQSPKPD-----LE 100

Query: 216 IDGYRKKKGDISSARILFEHMPIKDLISWNSM-IDG---------YAKIGDLVAAQQLFN 265
           +  Y       +  + + +   I  +I  N + +DG         Y   GDL   +++F+
Sbjct: 101 LRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFD 160

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFR----------------------------- 296
           ++    VF W+++++GYA+ GN +E+L LF+                             
Sbjct: 161 KVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWN 220

Query: 297 --------------------EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS 336
                               +ML  G+  D+ +++  ++ C+  G L LG+ +H +  ++
Sbjct: 221 SMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKA 280

Query: 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF 396
               ++ +   L+DMY K G+L+ A ++F +M +++V+S+  MIAG    G  + +++ F
Sbjct: 281 SFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLF 340

Query: 397 AQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456
            +ME EGI  D      +L AC+ +GL   G  +   +K +  ++  L   + L+D+ ++
Sbjct: 341 HEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKEN-KMQSDLFVSNALMDMYAK 399

Query: 457 AGELEQALNIVESMPMKPNLALWGTLL 483
            G +  A ++   M +K ++  W T++
Sbjct: 400 CGSMGDAHSVFSEMQVK-DIVSWNTMI 425


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 205/595 (34%), Positives = 312/595 (52%), Gaps = 73/595 (12%)

Query: 61  NMDQAERLFNQIYQP---NTYMHNTMIRGYTQSSNPQKALSFYVNM------KRKGLLVD 111
           +++ A  +F++I +    +    N+++  + + SNP+ AL  +  M      K      D
Sbjct: 199 SLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSD 258

Query: 112 NYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE 171
             +   +L AC  L  L +  EIH   ++ G   D FV N LI  Y+KCG M  A +VF 
Sbjct: 259 IISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFN 318

Query: 172 GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMI-----DGYRKK 222
             E KD+VSWN ++ G+ + G+ G A E+F  M ++    D I+WS +I      GY ++
Sbjct: 319 VMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQE 378

Query: 223 KGDISSARILFEHMP--------------------------------------------- 237
             D     IL+   P                                             
Sbjct: 379 ALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGD 438

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMP--ERNVFSWSIMIDGYAQHGNPKEALYLF 295
            +DL+  N++ID Y+K     AA+ +FN +P  ERNV +W++MI GYAQ+G+  +AL LF
Sbjct: 439 GEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLF 498

Query: 296 REMLCQ--GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI--VQTALIDM 351
            EM+ +   V P+  ++   + ACA + +L +GK IH ++ R       +  V   LIDM
Sbjct: 499 SEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDM 558

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y KCG +D AR +F SM K+N +S+  M++G GM+G G+EAL  F +M+  G   DD+ F
Sbjct: 559 YSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISF 618

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           L +L ACSHSG+  +G   F  M+   G+    +HY+C++DLL+R+G L++A   ++ MP
Sbjct: 619 LVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMP 678

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           M+P+ A+W  LL ACR H NV LAE  +  LV +KA++ G Y L+SNIYA A  W+   R
Sbjct: 679 MEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVAR 738

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586
           IR++M+K  IKK  G S ++       F  G+    +S  L   I S ++  I R
Sbjct: 739 IRQLMKKSGIKKRPGCSWVQGKKGTASFFVGD----RSHPLSPEIYSLLERLIGR 789



 Score =  221 bits (564), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 170/612 (27%), Positives = 279/612 (45%), Gaps = 92/612 (15%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLM------SLTSPNTLNM------ 62
             SLL+  ++   + QI  ++    L++ P +L  + +      S  SP +L        
Sbjct: 34  FASLLKECRSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKSLGTGVVASY 93

Query: 63  ------DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYP 116
                   A  +  ++        N ++R + +     +A+     M R G   D++T P
Sbjct: 94  LACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLP 153

Query: 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE---GS 173
           + LKACG L     G+  HG +   GF  +VFV N L+ MYS+ G +  A  VF+     
Sbjct: 154 YALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRK 213

Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEM----------------------------- 204
            I D++SWN ++   V+      A ++F EM                             
Sbjct: 214 GIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLK 273

Query: 205 --PQ--------------KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMI 248
             PQ               DA   + +ID Y  K G +  A  +F  M  KD++SWN+M+
Sbjct: 274 ALPQTKEIHSYAIRNGTFADAFVCNALIDTY-AKCGSMKDAVNVFNVMEFKDVVSWNAMV 332

Query: 249 DGYAKIGDLVAAQQLFNEMPERN----VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
            GY + G   AA +LF  M + N    V +WS +I GYAQ G  +EAL  F++M+  G  
Sbjct: 333 TGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSE 392

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVF-MKRSRITM-----------DMIVQTALIDMY 352
           P+ ++++  +SACA +GAL  G   H + +K+  +++           D++V  ALIDMY
Sbjct: 393 PNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMY 452

Query: 353 MKCGSLDEARRIFYSMTK--KNVISYNVMIAGLGMNGFGEEALKCFAQMETE--GIPKDD 408
            KC S   AR IF S+ +  +NV+++ VMI G    G   +ALK F++M ++   +  + 
Sbjct: 453 SKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNA 512

Query: 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS-CLVDLLSRAGELEQALNIV 467
                +L+AC+H      G +I   + RH   E  +   + CL+D+ S+ G+++ A N+ 
Sbjct: 513 YTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVF 572

Query: 468 ESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLSNIYADAGM 525
           +SMP K N   W +++     H     A  + + + +     DD    VLL    + +GM
Sbjct: 573 DSMP-KRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYAC-SHSGM 630

Query: 526 WEHALRIRKMMR 537
            +  L    +MR
Sbjct: 631 VDQGLDYFDIMR 642


>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
          Length = 496

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 178/411 (43%), Positives = 260/411 (63%), Gaps = 2/411 (0%)

Query: 114 TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS 173
           TYPFV+KAC        G  +H  V K GF CD ++V+ LI +Y+    +G A+ +F   
Sbjct: 2   TYPFVIKACNESSVTWFGLLVHTHV-KSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLC 60

Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILF 233
             +DLVSWN ++ G+V+ GEMG AR VFD M  +D ISW+ MI+GY    G I  A+ LF
Sbjct: 61  SDRDLVSWNAMIDGYVKRGEMGHARMVFDRMVCRDVISWNTMINGY-AIVGKIDEAKRLF 119

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
           + MP ++L+S NSM+ G+ K G++  A  LF+EMP R+V SW+ M+  YAQ G P EAL 
Sbjct: 120 DEMPERNLVSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALA 179

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           LF +M   GV+P   +V+  +SACA +GALD G  +H ++  +RI ++ IV TAL+DMY 
Sbjct: 180 LFDQMXAVGVKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYA 239

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCG +  A ++F +M  K+V+++N +IAG+ + G  +EA + F +M+  G+  +D+ F+ 
Sbjct: 240 KCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVA 299

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           +L ACSH+G+  EG ++   M    GIEPK+EHY C++DLL+RAG LE+A+ ++ +MPM+
Sbjct: 300 MLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPME 359

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524
           PN    G LL  CR H N  L E+V + L+ L+    G         AD G
Sbjct: 360 PNPCALGALLGGCRIHGNFELGEMVGKRLINLQPCQSGRLKSAIGXSADTG 410



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 156/372 (41%), Gaps = 83/372 (22%)

Query: 58  NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF 117
           N  ++  A++LFN     +    N MI GY +                            
Sbjct: 46  NGKDLGAAKQLFNLCSDRDLVSWNAMIDGYVK---------------------------- 77

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLC-DVFVVNGLIGMYSKCGHMGCARSVFEGSEIK 176
                        G   H  +V    +C DV   N +I  Y+  G +  A+ +F+    +
Sbjct: 78  ------------RGEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPER 125

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFE-- 234
           +LVS N +L GFV+CG +  A  +F EMP +D +SW+ M+  Y  + G  + A  LF+  
Sbjct: 126 NLVSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACY-AQCGKPNEALALFDQM 184

Query: 235 -------------------------------HMPIKD------LISWNSMIDGYAKIGDL 257
                                          H  I D       I   +++D YAK G +
Sbjct: 185 XAVGVKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKI 244

Query: 258 VAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISAC 317
             A Q+FN M  ++V +W+ +I G A  G+ KEA  LF+EM   GV P+ I+ +  +SAC
Sbjct: 245 SLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAMLSAC 304

Query: 318 AQVGALDLGKWIHVFMKRSR-ITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVIS 375
           +  G +D G+ +   M  S  I   +     +ID+  + G L+EA  +  +M  + N  +
Sbjct: 305 SHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCA 364

Query: 376 YNVMIAGLGMNG 387
              ++ G  ++G
Sbjct: 365 LGALLGGCRIHG 376



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 110/244 (45%), Gaps = 25/244 (10%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N++ A  LF+++   +    N+M+  Y Q   P +AL+ +  M   G+     T   +L 
Sbjct: 142 NVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMXAVGVKPSEATVVSLLS 201

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L +G  +H  +       +  V   L+ MY+KCG +  A  VF   E KD+++
Sbjct: 202 ACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLA 261

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQK-------------DAISWSIMIDGYRKKKGDIS 227
           WN ++ G    G + +A+++F EM +               A S + M+D  +K    +S
Sbjct: 262 WNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMS 321

Query: 228 SARIL---FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYA 283
           S+  +    EH        +  +ID  A+ G L  A +L   MP E N  +   ++ G  
Sbjct: 322 SSYGIEPKVEH--------YGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCR 373

Query: 284 QHGN 287
            HGN
Sbjct: 374 IHGN 377


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 191/521 (36%), Positives = 303/521 (58%), Gaps = 12/521 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D A  +F+ +   +    N M+ G  Q+    +A + ++ M+++GL+ D+ TY  +L 
Sbjct: 473 SIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLN 532

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
             G    L    E+H   V+ G + D  V +  I MY +CG +  AR +F+   ++ + +
Sbjct: 533 THGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTT 592

Query: 181 WNLVLRGFVE--CGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFE 234
           WN ++ G  +  CG   +A  +F +M ++    DA ++ I I      +  +   + +  
Sbjct: 593 WNAMIGGAAQQRCGR--EALSLFLQMQREGFIPDATTF-INILSANVDEEALEWVKEVHS 649

Query: 235 HMP---IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           H     + DL   N+++  Y+K G++  A+Q+F++M ERNV +W++MI G AQHG   +A
Sbjct: 650 HATDAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDA 709

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
              F +ML +G+ PD  + +  +SACA  GAL+  K +H     + +  D+ V  AL+ M
Sbjct: 710 FSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHM 769

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y KCGS+D+AR +F  M +++V S+ VMI GL  +G G EAL  F +M++EG   +   +
Sbjct: 770 YAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSY 829

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           + VL ACSH+GL  EG R F SM +  GIEP +EHY+C+VDLL RAG LE+A   + +MP
Sbjct: 830 VAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMP 889

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           ++P+ A WG LL AC  + N+ +AE   +  ++LK      YVLLSNIYA  G WE  L 
Sbjct: 890 IEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLL 949

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           +R MM+++ I+KE GRS IE+D  I  FV G+    +S+E+
Sbjct: 950 VRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPESKEI 990



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 126/431 (29%), Positives = 223/431 (51%), Gaps = 17/431 (3%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A ++F+++ + N Y+  TMI GY +  + + A+  Y  M+++    +  TY  +LKAC  
Sbjct: 172 ARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCC 231

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
            + L  G +IH  +++ GF  DV V   L+ MY KCG +  A+ +F+    ++++SW ++
Sbjct: 232 PVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVM 291

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWS---IMIDGYRKKKGDISSARILFEHMPIK-- 239
           + G    G   +A  +F +M ++  I  S   + I       G +   + +  H      
Sbjct: 292 IGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGL 351

Query: 240 --DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
             DL   N+++  YAK G +  A+ +F+ M ER++FSW++MI G AQHG  +EA  LF +
Sbjct: 352 ALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQ 411

Query: 298 MLCQGVRPDVISVMGAI--SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
           M   G  P++ + +  +  SA A   AL+  K +H   + +    D+ +  ALI MY KC
Sbjct: 412 MQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKC 471

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
           GS+D+AR +F  M  ++VIS+N M+ GL  NG G EA   F QM+ EG+  D   +L +L
Sbjct: 472 GSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLL 531

Query: 416 IACSHSGLATEGYRIFQSMKRHC---GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
               ++  +T+       + +H    G+       S  + +  R G ++ A  + + + +
Sbjct: 532 ----NTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSV 587

Query: 473 KPNLALWGTLL 483
           + ++  W  ++
Sbjct: 588 R-HVTTWNAMI 597



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 121/438 (27%), Positives = 214/438 (48%), Gaps = 12/438 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A+ +F+++ + N      MI G       Q+A   ++ M+R+G + ++YTY  +L 
Sbjct: 269 SIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILN 328

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           A      L    E+H   V  G   D+ V N L+ MY+K G +  AR VF+G   +D+ S
Sbjct: 329 ANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFS 388

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAIS-----WSIMIDGYRKKKGDISSARILFEH 235
           W +++ G  + G   +A  +F +M +   +       SI+          +   +++ +H
Sbjct: 389 WTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKH 448

Query: 236 MP----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
                 I DL   N++I  YAK G +  A+ +F+ M +R+V SW+ M+ G AQ+G   EA
Sbjct: 449 AEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEA 508

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
             +F +M  +G+ PD  + +  ++      AL+    +H     + +  D  V +A I M
Sbjct: 509 FTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHM 568

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y++CGS+D+AR +F  ++ ++V ++N MI G      G EAL  F QM+ EG   D   F
Sbjct: 569 YIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTF 628

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           + +L A +    A E  +   S     G+   L   + LV   S+ G ++ A  + + M 
Sbjct: 629 INILSA-NVDEEALEWVKEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDM- 685

Query: 472 MKPNLALWGTLLLACRNH 489
           ++ N+  W  ++     H
Sbjct: 686 VERNVTTWTMMIGGLAQH 703



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 122/437 (27%), Positives = 220/437 (50%), Gaps = 20/437 (4%)

Query: 105 RKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG 164
           ++G+ +D+++Y  +L+ C     ++   ++H  ++K G   +++V N L+ +Y +CG + 
Sbjct: 111 QQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQ 170

Query: 165 CARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDG-- 218
           CAR VF+    K++  W  ++ G+ E G    A  V+D+M Q+    + I++  ++    
Sbjct: 171 CARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACC 230

Query: 219 --YRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
                K G    A I+       D+    ++++ Y K G +  AQ +F++M ERNV SW+
Sbjct: 231 CPVNLKWGKKIHAHIIQSGFQ-SDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWT 289

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS 336
           +MI G A +G  +EA +LF +M  +G  P+  + +  ++A A  GAL+  K +H     +
Sbjct: 290 VMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNA 349

Query: 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF 396
            + +D+ V  AL+ MY K GS+D+AR +F  MT++++ S+ VMI GL  +G G+EA   F
Sbjct: 350 GLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLF 409

Query: 397 AQMETEGIPKDDLIFLGVLIACS-HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
            QM+  G   +   +L +L A +  S  A E  ++        G    L   + L+ + +
Sbjct: 410 LQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYA 469

Query: 456 RAGELEQALNIVESMPMKP----NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511
           + G ++ A  + + M  +     N  + G     C +       ++  EGLV     D  
Sbjct: 470 KCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVP----DST 525

Query: 512 LYVLLSNIYA--DAGMW 526
            Y+ L N +   DA  W
Sbjct: 526 TYLSLLNTHGSTDALEW 542



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 105/209 (50%), Gaps = 6/209 (2%)

Query: 279 IDGYAQHGN----PKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           +DG A+  +     K+A+ + +  + QG+  D  S +  +  C +   + L K +HV + 
Sbjct: 86  VDGAAEQTHNVITAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCII 145

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
           +S +  ++ V   L+ +Y++CG L  AR++F  + KKN+  +  MI G    G  E+A++
Sbjct: 146 KSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMR 205

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
            + +M  E    +++ +L +L AC        G +I   + +  G +  +   + LV++ 
Sbjct: 206 VYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQ-SGFQSDVRVETALVNMY 264

Query: 455 SRAGELEQALNIVESMPMKPNLALWGTLL 483
            + G +E A  I + M ++ N+  W  ++
Sbjct: 265 VKCGSIEDAQLIFDKM-VERNVISWTVMI 292


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 164/360 (45%), Positives = 253/360 (70%), Gaps = 3/360 (0%)

Query: 215 MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
           ++D Y  K GD+ SA+ +F+ MP + L+S  +MI  YAK G++ AA+ LF+ M ER++ S
Sbjct: 167 LVDVY-AKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVS 225

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHVFM 333
           W++MIDGYAQHG P +AL LF+++L +G  +PD I+V+ A+SAC+Q+GAL+ G+WIHVF+
Sbjct: 226 WNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFV 285

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
           K SRI +++ V T LIDMY KCGSL+EA  +F    +K+++++N MIAG  M+G+ ++AL
Sbjct: 286 KSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDAL 345

Query: 394 KCFAQME-TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
           + F +M+   G+   D+ F+G L AC+H+GL  EG RIF+SM +  GI+PK+EHY CLV 
Sbjct: 346 RLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVS 405

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
           LL RAG+L++A   +++M M  +  LW ++L +C+ H +  L + + E L+ L   + G+
Sbjct: 406 LLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGI 465

Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           YVLLSNIYA  G +E   ++R +M+++ I KE G S IEI+  + EF +G+    +S+E+
Sbjct: 466 YVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEI 525



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 180/376 (47%), Gaps = 51/376 (13%)

Query: 1   MKTLAAAKFSLKNP--LVSLLQISKTTTHILQILAQLTTNDLITEP-FTLSQLLMSLTSP 57
           + T A A+F L  P  L  L+  S++   +LQI A +  ++L+  P + +  L +     
Sbjct: 16  LSTTATARFRLPPPEKLAVLIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYA 75

Query: 58  NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF 117
           +   +  +  LF+Q   P+ ++    I   + +    +A   YV +    +  + +T+  
Sbjct: 76  SHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSS 135

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           +LK+C    G +    IH  V+K G   D +V  GL+ +Y+K G +  A+ VF+    + 
Sbjct: 136 LLKSCSTKSGKL----IHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERS 191

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM- 236
           LVS   ++  + + G +  AR +FD M ++D +SW++MIDGY  + G  + A +LF+ + 
Sbjct: 192 LVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGY-AQHGFPNDALMLFQKLL 250

Query: 237 ----PIKDLIS------------------W-----------------NSMIDGYAKIGDL 257
               P  D I+                  W                   +ID Y+K G L
Sbjct: 251 AEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSL 310

Query: 258 VAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML-CQGVRPDVISVMGAISA 316
             A  +FN+ P +++ +W+ MI GYA HG  ++AL LF EM    G++P  I+ +G + A
Sbjct: 311 EEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQA 370

Query: 317 CAQVGALDLGKWIHVF 332
           CA  G ++ G  I +F
Sbjct: 371 CAHAGLVNEG--IRIF 384


>gi|147811906|emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
          Length = 633

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 196/537 (36%), Positives = 293/537 (54%), Gaps = 47/537 (8%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           L+S LQ   +   + Q    +T + L   PF +S+++  L+     ++  A+ +F     
Sbjct: 9   LLSKLQQLSSVKEVEQTQCLITKSGLFNHPFVISKIISFLSLSPLGSLVYAQAIFEDTTM 68

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG--- 131
            N ++ NTMIR Y +S  P KA+  Y  M RK +  D++ YPF LKAC  ++   EG   
Sbjct: 69  DNPFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIKSDHFMYPFGLKACARVLWCNEGDIK 128

Query: 132 ----------TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
                      EIH  + ++G   D F+ N L+ +YS+CG +             DL   
Sbjct: 129 CTQLDIACKGAEIHCRLFRLGLDQDCFIQNSLVYLYSQCGFL-------------DL--- 172

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
                          AR VFDEM +K   SW++MI  Y  +  D  SA  L   MP K++
Sbjct: 173 ---------------ARRVFDEMTEKTITSWNVMISAY-DQINDFDSADSLIGSMPGKNV 216

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
           +SWN +I  Y ++G +  A+ +F EMPER+  SW+ MI GY Q  +   AL LFREM   
Sbjct: 217 VSWNMLIARYIRLGKIEDAKAVFQEMPERDAVSWNSMIAGYVQIKDYARALALFREMEIA 276

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
            V    I+++  + ACA+ GAL++G+ IH+ +K+    ++  +  AL+DMY KCG L+ A
Sbjct: 277 NVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNALVDMYAKCGHLNLA 336

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME--TEGIPKDDLIFLGVLIACS 419
             +F  +  K++  +N MI  L ++G+ EEAL+ F+ ME   +G   + + F+GVLIACS
Sbjct: 337 WEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRVTFIGVLIACS 396

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           H GL  EG + F  M     I P ++HY C+VDLLSR G L++A +++++MP + N  LW
Sbjct: 397 HKGLVDEGRKFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHMIKTMPFEANSVLW 456

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
            TLL ACR H +V LAE   + L +++    G YVLLSNIYA+A  W    R  K++
Sbjct: 457 RTLLGACRVHHHVDLAEESFQQLGKMEPLRDGDYVLLSNIYAEAQRWNDVERASKIL 513


>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 670

 Score =  345 bits (884), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 193/566 (34%), Positives = 308/566 (54%), Gaps = 20/566 (3%)

Query: 38  NDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ----IYQPNTYMH-----------NT 82
           NDL +     +QLL S    N L + +A   F +    I  P  ++            N 
Sbjct: 95  NDLRSFKQIHAQLLRSTLVDNDLVVTKAANFFGKHVTDIRYPCNFLKQFDWSFSSFPCNL 154

Query: 83  MIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMG 142
           +I GY   + P  A+  Y  +   G + D YT P VLK+C    G+ E  +IH   VK  
Sbjct: 155 IISGYGAGNFPWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARFSGIAEVKQIHTLAVKTD 214

Query: 143 FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFD 202
             CD+FV N  + +YS CG    A  VF+   ++D+VSW  ++ G+++ G    A  +F 
Sbjct: 215 LWCDMFVQNSFVHVYSICGDTVGASKVFDFMPVRDVVSWTGLISGYMKAGLFNDAVALFL 274

Query: 203 EMPQKDAISWSIMIDGYRKKKGDISSAR----ILFEHMPIKDLISWNSMIDGYAKIGDLV 258
            M      +  + I G   K G ++  +    ++ ++   K+L+  N+++D Y K   + 
Sbjct: 275 RMDVAPNAATFVSILGACGKLGCLNLGKGIHGLVSKYPHGKELVVSNTLMDMYVKCESVT 334

Query: 259 AAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACA 318
            A++LF+E+PE+++ SW+ MI G  Q+  P+E+L LF EML  G  PD + +   +SACA
Sbjct: 335 DAKRLFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFYEMLGSGFEPDGVILTSVLSACA 394

Query: 319 QVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNV 378
            +G LD G+W+H ++  SRI  D+ + T+LIDMY KCG ++ A+++F  +  KN+ ++N 
Sbjct: 395 SLGLLDYGRWVHEYIDHSRIKWDVHIGTSLIDMYAKCGCIEMAQQMFNLLPSKNIRTWNA 454

Query: 379 MIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC 438
            I GL +NG G+EALK F  +   G   +++ FL V  AC HSGL  EG   F+ M    
Sbjct: 455 YIGGLAINGHGQEALKQFGYLVESGTRPNEITFLAVFSACCHSGLVDEGRSYFKQMTSPP 514

Query: 439 -GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEV 497
             + P LEHY C+VDLL RA  +E+A+ ++  MPM P++ + G LL A   + NV L   
Sbjct: 515 YNLSPWLEHYGCMVDLLCRAELVEEAMELINKMPMPPDVQIIGALLSASSTYGNVELTPE 574

Query: 498 VVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIK 557
           +++ +   +  + G+YVLLSN YA+   W     +R++M+++ I K  G S+I +DG   
Sbjct: 575 MLKTVRNFECQESGVYVLLSNWYANNKKWAEVRSVRRLMKEKGISKAPGSSLIRVDGKSH 634

Query: 558 EFVSGEIFDVQSEELELVIQSFVKTT 583
           +FV G+    QSE++ +++      T
Sbjct: 635 KFVVGDNNHPQSEDIHVLLNILANQT 660


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 189/542 (34%), Positives = 302/542 (55%), Gaps = 29/542 (5%)

Query: 27  HILQILAQLTTNDLITEPF-TLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIR 85
           + L++L +   + L+T  F TLS+ + S T  +  N +            N    N +I 
Sbjct: 2   YCLRLLRRKKRSPLLTSSFVTLSKYVSSHTHQHEFNNN------------NVIASNKLIA 49

Query: 86  GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGF-- 143
            Y +  +   A+  + +MK K  +  N       K  G           H E  +  F  
Sbjct: 50  SYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPG-----------HFEYARQLFEK 98

Query: 144 LCDVFVVNGLIGMYSKCGHMGC--ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVF 201
           +     V+  I +     H+G   AR  F+   +KD+ SWN ++    + G MG+AR +F
Sbjct: 99  IPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLF 158

Query: 202 DEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQ 261
             MP+K+ +SWS M+ GY    GD+ +A   F   P++ +I+W +MI GY K G +  A+
Sbjct: 159 SAMPEKNCVSWSAMVSGY-VACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVELAE 217

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
           +LF EM  R + +W+ MI GY ++G  ++ L LFR ML  GV+P+ +S+   +  C+ + 
Sbjct: 218 RLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLS 277

Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
           AL LGK +H  + +  ++ D    T+L+ MY KCG L +A  +F  + +K+V+ +N MI+
Sbjct: 278 ALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMIS 337

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
           G   +G G++AL+ F +M+ EG+  D + F+ VL+AC+H+GL   G + F +M+R  GIE
Sbjct: 338 GYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIE 397

Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEG 501
            K EHY+C+VDLL RAG+L +A+++++SMP KP+ A++GTLL ACR H+N+ LAE   + 
Sbjct: 398 TKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKN 457

Query: 502 LVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
           L+EL       YV L+N+YA    W+H   IR+ M+   + K  G S IEI+  +  F S
Sbjct: 458 LLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVHGFRS 517

Query: 562 GE 563
            +
Sbjct: 518 SD 519


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 183/520 (35%), Positives = 296/520 (56%), Gaps = 8/520 (1%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +M+ A  +F+ +   N      MI G+ Q     +A  F+  M   G+  +  T+  +L 
Sbjct: 362 SMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILG 421

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC     L  G +I   +++ G+  D  V   L+ MY+KCG +  A  VFE    +++V+
Sbjct: 422 ACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVA 481

Query: 181 WNLVLRGFVECGEMGKAREVFD----EMPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           WN ++  +V+  +   A   F     E  + ++ +++ +++  +          + F  M
Sbjct: 482 WNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIM 541

Query: 237 PI---KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
                 DL   N+++  +   GDL++A+ LFN+MP+R++ SW+ +I G+ QHG  + A  
Sbjct: 542 KAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFD 601

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
            F+ M   G++PD I+  G ++ACA   AL  G+ +H  +  +    D++V T LI MY 
Sbjct: 602 YFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYT 661

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCGS+++A ++F+ + KKNV S+  MI G   +G G+EAL+ F QM+ EG+  D + F+G
Sbjct: 662 KCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVG 721

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
            L AC+H+GL  EG   FQSMK    IEP++EHY C+VDL  RAG L +A+  +  M ++
Sbjct: 722 ALSACAHAGLIEEGLHHFQSMKEF-NIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVE 780

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
           P+  +WG LL AC+ H NV LAE   +  +EL  +D G++V+LSNIYA AGMW+   ++R
Sbjct: 781 PDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMR 840

Query: 534 KMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELE 573
           K+M  R + K+ G+S IE+DG +  F S +    Q+EE+ 
Sbjct: 841 KVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIH 880



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/441 (28%), Positives = 217/441 (49%), Gaps = 19/441 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N   A+++F+ + + + Y  N ++ GY Q    ++A   +  M +  +  D  T+  +L 
Sbjct: 160 NTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLN 219

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC     + +G E++  ++K G+  D+FV   LI M+ KCG +G A  VF+    +DLV+
Sbjct: 220 ACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVT 279

Query: 181 WNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           W  ++ G    G   +A  +F  M     Q D +++  ++      +      ++   H 
Sbjct: 280 WTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKV---HA 336

Query: 237 PIKDLISWNS-------MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
            +K+ + W++       ++  Y K G +  A ++F+ +  RNV SW+ MI G+AQHG   
Sbjct: 337 RMKE-VGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRID 395

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           EA   F +M+  G+ P+ ++ M  + AC+   AL  G+ I   +  +    D  V+TAL+
Sbjct: 396 EAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALL 455

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
            MY KCGSL +A R+F  ++K+NV+++N MI     +   + AL  F  +  EGI  +  
Sbjct: 456 SMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSS 515

Query: 410 IFLGVLIACSHSGLATEGYRI-FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468
            F  +L  C  S     G  + F  MK   G+E  L   + LV +    G+L  A N+  
Sbjct: 516 TFTSILNVCKSSDSLELGKWVHFLIMK--AGLESDLHVSNALVSMFVNCGDLMSAKNLFN 573

Query: 469 SMPMKPNLALWGTLLLACRNH 489
            MP K +L  W T++     H
Sbjct: 574 DMP-KRDLVSWNTIIAGFVQH 593



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/438 (28%), Positives = 225/438 (51%), Gaps = 13/438 (2%)

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           +T   N ++   +++    +A+     +    + +   TY  +L+ C     L +G  I+
Sbjct: 74  DTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIY 133

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
             + K G   D+F+ N LI MY+KCG+   A+ +F+    KD+ SWNL+L G+V+ G   
Sbjct: 134 NHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYE 193

Query: 196 KAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMPIK-----DLISWNS 246
           +A ++ ++M Q     D  ++  M++     + ++   R L+ ++ +K     DL    +
Sbjct: 194 EAFKLHEQMVQDSVKPDKRTFVSMLNACADAR-NVDKGRELY-NLILKAGWDTDLFVGTA 251

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           +I+ + K GD+  A ++F+ +P R++ +W+ MI G A+HG  K+A  LF+ M  +GV+PD
Sbjct: 252 LINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPD 311

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
            ++ +  + AC    AL+ GK +H  MK      ++ V TA++ MY KCGS+++A  +F 
Sbjct: 312 KVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFD 371

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            +  +NV+S+  MIAG   +G  +EA   F +M   GI  + + F+ +L ACS       
Sbjct: 372 LVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKR 431

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G +I Q      G        + L+ + ++ G L+ A  + E +  K N+  W  ++ A 
Sbjct: 432 GQQI-QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAY 489

Query: 487 RNHQNVTLAEVVVEGLVE 504
             H+    A    + L++
Sbjct: 490 VQHEQYDNALATFQALLK 507



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 186/346 (53%), Gaps = 23/346 (6%)

Query: 173 SEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK----------K 222
           ++IKD    N VL    + G+  +A +V + +        S  I  YR+          K
Sbjct: 70  ADIKDTQKANAVLNRLSKAGQFNEAMQVLERVD-------SSHIQIYRQTYSALLQLCIK 122

Query: 223 KGDISSARILFEHMPIK----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM 278
             ++     ++ H+       D+  WN++I+ YAK G+ ++A+Q+F++M E++V+SW+++
Sbjct: 123 FKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLL 182

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338
           + GY QHG  +EA  L  +M+   V+PD  + +  ++ACA    +D G+ ++  + ++  
Sbjct: 183 LGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGW 242

Query: 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
             D+ V TALI+M++KCG + +A ++F ++  ++++++  MI GL  +G  ++A   F +
Sbjct: 243 DTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQR 302

Query: 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458
           ME EG+  D + F+ +L AC+H     +G ++   MK   G + ++   + ++ + ++ G
Sbjct: 303 MEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKE-VGWDTEIYVGTAILSMYTKCG 361

Query: 459 ELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE 504
            +E AL + + +  + N+  W  ++     H  +  A +    ++E
Sbjct: 362 SMEDALEVFDLVKGR-NVVSWTAMIAGFAQHGRIDEAFLFFNKMIE 406



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 78/150 (52%)

Query: 58  NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF 117
           N  ++  A+ LFN + + +    NT+I G+ Q    Q A  ++  M+  G+  D  T+  
Sbjct: 561 NCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTG 620

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           +L AC     L EG  +H  + +  F CDV V  GLI MY+KCG +  A  VF     K+
Sbjct: 621 LLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKN 680

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQK 207
           + SW  ++ G+ + G   +A E+F +M Q+
Sbjct: 681 VYSWTSMITGYAQHGRGKEALELFYQMQQE 710


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 201/562 (35%), Positives = 306/562 (54%), Gaps = 67/562 (11%)

Query: 13  NP-LVSLLQISKTTTHILQILAQLTTNDLITEPF-TLSQLLMSLTSPNTLNMDQAERLFN 70
           NP ++SL    KT  H+ Q+ AQ+ T+     PF   +   +S  SP    +  A+ +F+
Sbjct: 67  NPQILSLFNPCKTLRHLKQVHAQIITHH--NSPFQLSALASLSALSPFPTFLAYAKTIFH 124

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
            +  P   ++N++IR  + S  P +AL  Y  M + GL  D+ TYPFV+KAC        
Sbjct: 125 HLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACN------- 177

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
                  V   G L    VV                                    GF E
Sbjct: 178 ----ESSVTWFGLLVHTHVVKS----------------------------------GF-E 198

Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDG 250
           C                D+   S +I  Y   K D+ +A+ LF     +D++SWN+MIDG
Sbjct: 199 C----------------DSYIVSSLIHLYANGK-DLGAAKQLFNLCSARDVVSWNAMIDG 241

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           Y K  ++  A+ +F+ M  R+V SW+ MI+GYA  G P EAL LF +M   GV+P   +V
Sbjct: 242 YVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATV 301

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
           +  +SACA +GALD G  +H ++  +RI ++ IV TAL+DMY KCG +  A ++F +M  
Sbjct: 302 VSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMES 361

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           K+V+++N +IAG+ ++G  +EA + F +M+  G+  +D+ F+ +L ACSH+G+  EG ++
Sbjct: 362 KDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKL 421

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
              M    GIEPK+EHY C++DLL+RAG LE+A+ ++ +MPM+PN +  G LL  CR H 
Sbjct: 422 LDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHG 481

Query: 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           N  L E+V + L+ L+    G Y+LLSNIYA A  W+ A ++R +M+   I K  G SVI
Sbjct: 482 NFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVI 541

Query: 551 EIDGNIKEFVSGEIFDVQSEEL 572
           E+ G +  FV+G+    +S ++
Sbjct: 542 ELKGMVHRFVAGDWSHPESNKI 563


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 187/526 (35%), Positives = 301/526 (57%), Gaps = 25/526 (4%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL-VDNYTYPFVLK 120
           ++ A ++F+++ + +T + NTMI GY ++    +++  + ++  +    +D  T   +L 
Sbjct: 170 VEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILP 229

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           A   L  L  G +IH    K G     +V+ G I +YSKCG +    ++F      D+V+
Sbjct: 230 AVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVA 289

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI-- 238
           +N ++ G+   GE   +  +F E+          M+ G R +   + S   +  H+ +  
Sbjct: 290 YNAMIHGYTSNGETELSLSLFKEL----------MLSGARLRSSTLVSLVPVSGHLMLIY 339

Query: 239 --------KDLISWNSMIDG----YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
                    + +S  S+       Y+K+ ++ +A++LF+E PE+++ SW+ MI GY Q+G
Sbjct: 340 AIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNG 399

Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
             ++A+ LFREM      P+ +++   +SACAQ+GAL LGKW+H  ++ +     + V T
Sbjct: 400 LTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVST 459

Query: 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK 406
           ALI MY KCGS+ EARR+F  MTKKN +++N MI+G G++G G+EAL  F +M   GI  
Sbjct: 460 ALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITP 519

Query: 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466
             + FL VL ACSH+GL  EG  IF SM    G EP ++HY+C+VD+L RAG L++AL  
Sbjct: 520 TPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQF 579

Query: 467 VESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMW 526
           +E+M ++P  ++W TLL ACR H++  LA  V E L EL  D+ G +VLLSNI++    +
Sbjct: 580 IEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNY 639

Query: 527 EHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
             A  +R+  +KRK+ K  G ++IEI      F SG+    Q +E+
Sbjct: 640 PQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEI 685



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 111/485 (22%), Positives = 221/485 (45%), Gaps = 24/485 (4%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           KN  +   + S + +H+ Q  AQ+  +    +   L++L   L+    +    A  +F  
Sbjct: 20  KNTYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYY--ARDIFLS 77

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNY-TYPFVLKACGVLMGLVE 130
           + +P+ ++ N ++RG++ + +P  +LS + ++++   L  N  TY F + A         
Sbjct: 78  VQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRA 137

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G  IHG+ V  G   ++ + + ++ MY K   +  AR VF+    KD + WN ++ G+ +
Sbjct: 138 GRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197

Query: 191 CGEMGKAREVFDEMPQKDA--ISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS----- 243
                ++ +VF ++  +    +  + ++D       ++   R+    M I  L +     
Sbjct: 198 NEMYVESIQVFRDLINESCTRLDTTTLLD-ILPAVAELQELRL---GMQIHSLATKTGCY 253

Query: 244 -----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
                    I  Y+K G +     LF E  + ++ +++ MI GY  +G  + +L LF+E+
Sbjct: 254 SHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKEL 313

Query: 299 LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
           +  G R   +     +S     G L L   IH +  +S       V TAL  +Y K   +
Sbjct: 314 MLSGAR---LRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEI 370

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
           + AR++F    +K++ S+N MI+G   NG  E+A+  F +M+      + +    +L AC
Sbjct: 371 ESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSAC 430

Query: 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
           +  G  + G +    + R    E  +   + L+ + ++ G + +A  + + M  K N   
Sbjct: 431 AQLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLM-TKKNEVT 488

Query: 479 WGTLL 483
           W T++
Sbjct: 489 WNTMI 493


>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
 gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
          Length = 429

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 168/409 (41%), Positives = 266/409 (65%), Gaps = 8/409 (1%)

Query: 144 LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDE 203
           + DV   N +IG Y KCG M  A+ VF+    ++ VSW+ ++ G+   GE+  ARE+FD 
Sbjct: 21  VADVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDR 80

Query: 204 MPQ--KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQ 261
           MP   ++ ++W+ M+ G+  + G +  AR +F+ MP+++L+SWN+M+ GY+   D+  A+
Sbjct: 81  MPAIGRNVVTWNSMVTGF-ARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGAR 139

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQV 320
           +LF+ MPE++V SW+ MI GYAQ G  ++ L LFR M  +  V+P+ ++++  +SACA +
Sbjct: 140 ELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANL 199

Query: 321 GALDLGKWIHVFMKRSRITM--DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNV 378
            AL+ G+W+H F+ + ++ +  +  +  ALIDMY KCG  D A +IF S+ +KNV ++N 
Sbjct: 200 TALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNA 259

Query: 379 MIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC 438
           +I  L MNG   +++  F QM+  G   +D+ F+GVL ACSH GL  EG R FQSM   C
Sbjct: 260 LITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTC 319

Query: 439 GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVV 498
           G++P+++HY C+VD+L RAG LE+A  ++ SMPM P++ ++G LL ACR H+   +AE V
Sbjct: 320 GVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERV 379

Query: 499 VEGL--VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
              +  + L A   G +VL+S+IYA AG W   L  R+++++  I+K T
Sbjct: 380 QSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRKWT 428



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 156/364 (42%), Gaps = 85/364 (23%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           M+ A+R+F+++ + N    +TM+ GY  +     A   +  M   G              
Sbjct: 40  MESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGR------------- 86

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
                                   +V   N ++  +++ G +  AR +F+   +++LVSW
Sbjct: 87  ------------------------NVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSW 122

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
           N +LRG+    +M  ARE+FD MP+KD +SW+ MI GY  + G       LF  M  +  
Sbjct: 123 NAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGY-AQAGRYQDTLELFRAMQTESN 181

Query: 242 ISWN------------------------------------------SMIDGYAKIGDLVA 259
           +  N                                          ++ID YAK G    
Sbjct: 182 VQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDI 241

Query: 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
           A ++FN +  +NV +W+ +I   A +GN ++++  F +M   G +P+ I+ +G ++AC+ 
Sbjct: 242 AVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSH 301

Query: 320 VGALDLGKWIHVFMKRS-RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNV 378
            G +D G+     M  +  +  ++     ++DM  + G L+EA  +  SM     ++ +V
Sbjct: 302 GGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMP----MAPDV 357

Query: 379 MIAG 382
           M+ G
Sbjct: 358 MVFG 361



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 91/219 (41%), Gaps = 11/219 (5%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDN-YTYPFVL 119
           +MD A  LF+ + + +      MI GY Q+   Q  L  +  M+ +  +  N  T   VL
Sbjct: 134 DMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVL 193

Query: 120 KACGVLMGLVEGTEIHG--EVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
            AC  L  L EG  +H   +  KM    +  +   LI MY+KCG    A  +F   + K+
Sbjct: 194 SACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKN 253

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR---KKKGDISSARILFE 234
           + +WN ++      G    + + F++M +       I   G        G +   R  F+
Sbjct: 254 VSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQ 313

Query: 235 HMPIK-----DLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
            M        ++  +  M+D   + G L  A++L   MP
Sbjct: 314 SMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMP 352


>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g05240-like [Glycine max]
          Length = 552

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 188/523 (35%), Positives = 297/523 (56%), Gaps = 19/523 (3%)

Query: 47  LSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK 106
           LS+L+         +++ A+ +F QI  P+ Y+ N+MIRG+  + NP+ ++  Y  +   
Sbjct: 28  LSKLIDFCVDSXFGDINNADLVFRQIDAPSVYIWNSMIRGFVNNHNPRMSMLLYRQLIEN 87

Query: 107 GLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCA 166
           G   D++T+PFVLKAC  +     G  IH  +VK GF  D +   GL+ MY  C  M   
Sbjct: 88  GYSPDHFTFPFVLKACCAIADQDCGKCIHCCIVKSGFEADAYTATGLLHMYVSCADMKSG 147

Query: 167 RSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ-----KDAISWSIMIDGYRK 221
             VF+   I ++V+W  ++ G+V   +  +A +VF +M        +    + +I   R 
Sbjct: 148 LKVFDNIPIWNVVAWTCLIAGYVNNNQPYEALKVFKDMSHCGVEPNEITMVNALIXCARS 207

Query: 222 KKGDISSARILFEHM------PI-----KDLISWNSMIDGYAKIGDLVAAQQLFNEMPER 270
           +  D  + + + +H+      P       ++I   ++++ YAK G    A+ LFN+MP+R
Sbjct: 208 R--DFDTGQWVHQHIRKAGYDPFMSTSNSNIILATAILEMYAKCGSFKIARDLFNKMPQR 265

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           N+ SW+ MI+ Y Q+   KEAL LF +M   G+ PD  + +  +S CA + AL LG+ +H
Sbjct: 266 NIVSWNSMINAYNQYERHKEALDLFFDMWTSGIYPDKATFLSVLSVCAHLCALALGQTVH 325

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
            ++ ++ I  D+ + TAL+DMY K G L  A++IF S+ K++V+ +  MI GL M+G G 
Sbjct: 326 AYLXKTGIGTDISLATALLDMYAKTGGLGSAQKIFSSLQKRDVVMWTSMINGLAMHGDGN 385

Query: 391 EALKCFAQM-ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449
           EAL  F  M E   +  D + ++GVL ACSH GL  E  + F+ M     I P  EHY C
Sbjct: 386 EALGMFQTMHEDSSLVPDHITYIGVLFACSHVGLVEEAKKHFRLMTEMYSIVPGREHYGC 445

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509
           +VDLLSR+G   +A  ++E+M ++PN+++ G LL  C+ H+N+ +A  V E L EL++  
Sbjct: 446 MVDLLSRSGHFGEAERLMETMAIQPNISIXGALLYGCQIHENLXVANQVKERLTELESCQ 505

Query: 510 CGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
            G +VLLSNIYA AG WE     RK+M+ ++I K  G S +E+
Sbjct: 506 SGAHVLLSNIYAKAGRWEDVNGTRKVMKHKRITKIIGHSSVEM 548


>gi|297741134|emb|CBI31865.3| unnamed protein product [Vitis vinifera]
          Length = 573

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 195/575 (33%), Positives = 307/575 (53%), Gaps = 52/575 (9%)

Query: 9   FSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERL 68
           + LK  L++ +   KT   + QI A L  + L+ + F LS++       +   +D A   
Sbjct: 2   YFLKLRLLNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKV-SEFFGKHIGFVDYAFDF 60

Query: 69  FNQI-YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
            NQ      T  +NT+I  Y  S  P+ A   Y  +   G + D YT+P VLKAC   +G
Sbjct: 61  LNQTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLG 120

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
           + EG ++HG  VKMGFLCD++V N L+  YS CG  G A  VF+   ++D+VSW  ++ G
Sbjct: 121 VQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISG 180

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR----ILFEHMPIKDLIS 243
           +V  G   +A  +F +M     ++  + +     + G +S  +    ++++      L+ 
Sbjct: 181 YVRTGLFDEAINLFLKMDVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVV 240

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
            N+++D Y K   L  A++LF+E+P+R++ SW+ +I G  Q   PK++L LF +M   GV
Sbjct: 241 GNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGV 300

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
            PD I +   +SACA +GALD G+W+  +++R  I  D+ + TAL+DMY KCG ++ A  
Sbjct: 301 EPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALH 360

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           IF  +  +N+ ++N ++ GL M+G G EALK F  M   GI  +++ FL +L AC HSGL
Sbjct: 361 IFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGL 420

Query: 424 ATEGYRIF-QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
             EG   F Q + +     P+LEHY C++DLL RAG L++A N                 
Sbjct: 421 VAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYN----------------- 463

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
                                       G+YVLLSNIYA    W+   R+R++M+ + I+
Sbjct: 464 ----------------------------GVYVLLSNIYATNERWDDVTRVRRLMKDKGIR 495

Query: 543 KETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           K  G SVIE+DG   EF+ G+    ++E++ +++ 
Sbjct: 496 KFPGSSVIEVDGEAHEFLVGDTNHSRNEDIHILLN 530


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 184/527 (34%), Positives = 301/527 (57%), Gaps = 14/527 (2%)

Query: 58  NTLNMDQAERLFNQIYQP--NTYMHNTMIRGYTQSSNPQKALSFYVNM-KRKGLLVDNYT 114
           ++ ++  A RLF     P  +   +N +IR + ++ +P+ AL  +V M     +  D +T
Sbjct: 114 SSAHLSYAIRLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHT 173

Query: 115 YPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174
               +K+C  +  L  G  +     K GF+ D FV+N LI MY+ CG +  A  +F   +
Sbjct: 174 VANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQ 233

Query: 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEM-----PQKDAISWSIMIDGYRKKKGDISSA 229
           +K +++WN ++ G+V+ G+  +  E+F  M     P  +    S+     R   GD +  
Sbjct: 234 VKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRL--GDANLG 291

Query: 230 RILFEHMPIKDLIS----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
           + + E+   K ++       +++D YAK G+L  A++LF+ M  R+V +WS MI GY Q 
Sbjct: 292 QWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQS 351

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
              +EAL +F EM    V P+ ++++  +SACA +GAL+ GKW+H +++R  + + +I+ 
Sbjct: 352 DRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILG 411

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
           TAL+D Y KCG + +A + F SM  +N  ++  +I G+  NG   EAL+ F+ M    I 
Sbjct: 412 TALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIE 471

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
             D+ F+GVL+ACSH  L  EG R F SM +  GI P++EHY C+VDLL RAG +++A  
Sbjct: 472 PTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQ 531

Query: 466 IVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM 525
            + +MP++PN  +W  LL AC  H+NV + E  ++ +V L     G Y+LLSN YA  G 
Sbjct: 532 FIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQ 591

Query: 526 WEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           W++A  +RK M+++ ++K  G S+IE++G I EF + +    Q  E+
Sbjct: 592 WKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEI 638


>gi|357445603|ref|XP_003593079.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360447|gb|ABN08457.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355482127|gb|AES63330.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 558

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 191/555 (34%), Positives = 321/555 (57%), Gaps = 8/555 (1%)

Query: 3   TLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTL-SQLLMSLT--SPNT 59
           ++  + FS+  PL   L  +K  +H+ QI A    +     P    ++LL  +   S   
Sbjct: 2   SITTSTFSIL-PLNQFLNNAKNISHLKQIHALFLKHLPQNAPHHFFNRLLFRVLHFSAEK 60

Query: 60  LNMDQAERLFNQIYQ-PNTYMHNTMIRGY-TQSSNPQKALSFYVNMKRKGLLVDNYTYPF 117
            N+  A +LF+ +    N ++  ++IR + +  ++    +S +  M +KG+L   +T+  
Sbjct: 61  SNLYYAHKLFDTMPNCSNCFIWTSLIRAFLSHHTHFCHCISTFARMHQKGILPSGFTFSL 120

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           VL ACG +    EG ++H  +V+ GFL +  V   L+ MY+KCGH+  AR VF+G   +D
Sbjct: 121 VLNACGRVPAGFEGKQVHARLVQSGFLGNKIVQTALLDMYAKCGHVCDARDVFDGIVDRD 180

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMP 237
           +V+W  ++ G+ + G M  AR +FD M ++++ +W+ M+ GY    GD+ +A  L++ M 
Sbjct: 181 VVAWTAMICGYAKAGRMVDARFLFDNMGERNSFTWTTMVAGY-ANYGDMKAAMELYDVMN 239

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEALYLFR 296
            KD ++W +MI GY K+G++  A+++F+E+    N  + + ++  YAQ+G+ +EA+ ++ 
Sbjct: 240 GKDEVTWVAMIAGYGKLGNVSEARRIFDEITVPWNPSTCAALLACYAQNGHAREAIEMYE 299

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
           +M    ++   ++++GAISACAQ+  + +   +   ++        IV  ALI M  KCG
Sbjct: 300 KMRRAKIKVTDVAMVGAISACAQLRDIRMSNSLTYNIEEGFCEKTHIVSNALIHMQSKCG 359

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
           ++D A R F  M  +++ +Y+ MIA    +G  ++A+  F +M+ EG+  + + F+GVL 
Sbjct: 360 NIDLAWREFNIMRNRDLYTYSAMIAAFAEHGKSQDAIDLFLKMQQEGLKPNQVTFVGVLN 419

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
           ACS SGL  EG R FQ M    GIEP  EHY+C+VDLL RAG+LE+A ++++      + 
Sbjct: 420 ACSTSGLIEEGCRFFQIMTEMYGIEPLPEHYTCMVDLLGRAGQLEKAYSLIKENSTSADA 479

Query: 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
             WG+LL ACR + NV L E+    L E+   D G YVLL+N YA    WE A  ++K+M
Sbjct: 480 TTWGSLLAACRVYGNVELGEIAARHLFEIDPTDSGNYVLLANTYASNDKWECAEEVKKLM 539

Query: 537 RKRKIKKETGRSVIE 551
            K+ +KK +G S I+
Sbjct: 540 SKKGMKKPSGYSWIQ 554


>gi|357480561|ref|XP_003610566.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511621|gb|AES92763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 598

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 191/553 (34%), Positives = 320/553 (57%), Gaps = 9/553 (1%)

Query: 14  PLVSLLQISKTTTHILQILAQLTTNDLITEPFTL-SQLLMSLT--SPNTLNMDQAERLFN 70
           PL   L  +K  +H+ QI A    +     P     +LL  +   S    N+  A +LF+
Sbjct: 12  PLNQFLNNAKNISHLKQIHALFLKHLPQNAPHHFFDRLLFRVLHFSAEKSNLYYAHKLFD 71

Query: 71  QIYQ-PNTYMHNTMIRGY-TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
            +    N ++  ++IR + +  ++ +  +S +  M +KG+L   +T+  VL ACG +  +
Sbjct: 72  TMPNCSNCFIWTSLIRAFLSHHTHFRHCISTFAIMHQKGILPSGFTFSSVLNACGRVPAV 131

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
            EG ++H  +V+ GFL +  V   L+ MY+KCG++  AR VF+G   +D+V+W  ++ G+
Sbjct: 132 FEGKQVHARLVQSGFLGNKIVQTALLDMYAKCGYVCDARDVFDGMVDRDVVAWTAMICGY 191

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMI 248
            + G M  AR +FD M ++++ +W+ M+ GY    GD+ +A  L++ M  K+ ++W +MI
Sbjct: 192 AKAGRMVDARLLFDNMGERNSFTWTTMVAGY-ANYGDMKAAMELYDVMNGKEEVTWVAMI 250

Query: 249 DGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
            GY K+G++  A+++F+E+P   N  + + ++  YAQ+G+ +EA+ ++ +M    ++   
Sbjct: 251 AGYGKLGNVSEARRIFDEIPVPLNPSTCAALLACYAQNGHAREAIEMYEKMRRAKIKVTD 310

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           ++++GAISACAQ+  + +   +   ++        IV  ALI M  KCG++D A R F  
Sbjct: 311 VAMVGAISACAQLRDIRMSNLLTYDIEEGFCEKTHIVSNALIHMQSKCGNIDLAWREFNI 370

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           M  +++ +Y+ MIA    +G  ++A+  F +M+ EG+  + + F+GVL ACS SGL  EG
Sbjct: 371 MRNRDLYTYSAMIAAFAEHGKSQDAIDLFLKMQQEGLTPNQVTFVGVLNACSTSGLIEEG 430

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
            R FQ M    GIEP  EHY+C+VDLL RAG+LE+A ++++      +   WG+LL ACR
Sbjct: 431 CRFFQIMTGVYGIEPLPEHYTCMVDLLGRAGQLEKAYSLIKENSTSADATTWGSLLAACR 490

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
            + NV L E+    L E+   D G YVLL+N YA    WE A  ++K+M K+ +KK +G 
Sbjct: 491 VYGNVELGEIAARHLFEIDPTDSGNYVLLANTYASNDKWERAEEVKKLMSKKGMKKPSGY 550

Query: 548 SVI--EIDGNIKE 558
           S I  E  G  +E
Sbjct: 551 SWIQRETKGQYQE 563


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 186/527 (35%), Positives = 287/527 (54%), Gaps = 39/527 (7%)

Query: 94  QKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGL 153
           + A++ Y  M  +G + D YT+P +LKA            +H  VVK G   +  V   L
Sbjct: 25  EDAVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSL 84

Query: 154 IGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA---- 209
           +  Y+  G    AR++    E    V WN ++ G   C   G+A   F +M +  A    
Sbjct: 85  VTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTP 144

Query: 210 ISWSIMIDGYRKKKGDI-----------------------------------SSARILFE 234
           +++  ++    K  GD+                                    SA  LF+
Sbjct: 145 VTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFD 204

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
            M ++ ++SW S++ G  ++G +  A+ LF  MPER+  SW+ MIDGY Q    +EAL +
Sbjct: 205 GMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEM 264

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           FREM C  V  D  +++  I+ACAQ+GAL++G+W+ V+M R  I MD  V  ALIDMY K
Sbjct: 265 FREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSK 324

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CGS++ A  +F  M  ++  ++  +I GL +NG+GEEA++ F +M       D++ F+GV
Sbjct: 325 CGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGV 384

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L AC+H+GL  +G   F SM+    I P + HY C++DL  RAG++ +AL+ ++ MPM P
Sbjct: 385 LTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTP 444

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           N  +WGTLL ACR H N  + E+V E L+++  ++  +Y LLSNIYA    WE   R+R 
Sbjct: 445 NSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRH 504

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
            + ++ IKKE G S+IE++G I EFV+G+     S+E+   ++S + 
Sbjct: 505 TIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKEIYCKLESIIN 551



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 176/366 (48%), Gaps = 44/366 (12%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG-LVEGTEIHGEVV 139
           N +I G+ +     +A   +V+M R G      TY  VL ACG   G ++ G ++HG VV
Sbjct: 113 NALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVV 172

Query: 140 KMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKARE 199
             G L D+ V N L+ MY++C  M  A  +F+G +++ +VSW  +L G    G + +AR+
Sbjct: 173 GSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARD 232

Query: 200 VFDEMPQKDAISWSIMIDGY-------------RKKKGDISSA----------------- 229
           +F  MP++D +SW+ MIDGY             R+ +    SA                 
Sbjct: 233 LFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGA 292

Query: 230 -------RILFEHMPIK-DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
                  R+      IK D    N++ID Y+K G +  A  +F +M  R+ F+W+ +I G
Sbjct: 293 LEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILG 352

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS-RITM 340
            A +G  +EA+ +F  M+     PD ++ +G ++AC   G +D G+   + M+ +  I  
Sbjct: 353 LAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAP 412

Query: 341 DMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG---FGEEALKCF 396
           +++    +ID++ + G + EA      M    N   +  ++A   ++G    GE   +  
Sbjct: 413 NVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERL 472

Query: 397 AQMETE 402
            QM+ E
Sbjct: 473 LQMDPE 478



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 134/322 (41%), Gaps = 47/322 (14%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D+A  LF ++ + +T     MI GY Q++  ++AL  +  M+   +  D +T   V+ A
Sbjct: 227 VDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITA 286

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G  +   + + G   D FV N LI MYSKCG +  A  VF+    +D  +W
Sbjct: 287 CAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTW 346

Query: 182 NLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARILFEHMP 237
             ++ G    G   +A E+F  M       D +++ I +       G +   R  F  M 
Sbjct: 347 TAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTF-IGVLTACTHAGLVDKGREFFLSMR 405

Query: 238 -----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEA 291
                  +++ +  +ID + + G +  A    ++MP   N   W  ++     HGN    
Sbjct: 406 ETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGN---- 461

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
                                     +++G L   + + +  + S       V T L ++
Sbjct: 462 --------------------------SEIGELVTERLLQMDPENS------TVYTLLSNI 489

Query: 352 YMKCGSLDEARRIFYSMTKKNV 373
           Y KC   ++ RR+ +++ +K +
Sbjct: 490 YAKCNRWEDVRRLRHTIMEKGI 511


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 204/594 (34%), Positives = 311/594 (52%), Gaps = 73/594 (12%)

Query: 61  NMDQAERLFNQIYQ---PNTYMHNTMIRGYTQSSNPQKALSFYVNM------KRKGLLVD 111
           ++++A  +F++I Q    +    N+++  + +SSN   AL  +  M      K      D
Sbjct: 60  SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 119

Query: 112 NYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE 171
             +   +L ACG L  + +  E+HG  ++ G   DVFV N LI  Y+KCG M  A  VF 
Sbjct: 120 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFN 179

Query: 172 GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDIS 227
             E KD+VSWN ++ G+ + G    A E+F  M ++    D ++W+ +I GY  ++G   
Sbjct: 180 MMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGY-SQRGCSH 238

Query: 228 SARILFEHMPI------------------------------------------------- 238
            A  +F  M                                                   
Sbjct: 239 EALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGED 298

Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMP--ERNVFSWSIMIDGYAQHGNPKEALYLFR 296
           +DL+ +N++ID Y+K     AA+ +F+++P  ERNV +W++MI G+AQ+G+  +AL LF 
Sbjct: 299 EDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFV 358

Query: 297 EMLCQ--GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI--TMDMIVQTALIDMY 352
           EM+ +  GV P+  ++   + ACA + A+ +GK IH ++ R     +    V   LI+MY
Sbjct: 359 EMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMY 418

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCG +D AR +F SM++K+ IS+  M+ G GM+G G EAL  F +M   G   DD+ FL
Sbjct: 419 SKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFL 478

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            VL ACSH G+  +G   F SM    G+ P+ EHY+  +DLL+R G L++A   V+ MPM
Sbjct: 479 VVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPM 538

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           +P   +W  LL ACR H NV LAE  +  LVE+ A++ G Y L+SNIYA AG W+   RI
Sbjct: 539 EPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARI 598

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586
           R +M+K  IKK  G S ++       F  G+    +S  L   I + +++ I+R
Sbjct: 599 RHLMKKSGIKKRPGCSWVQGQKGTASFFVGD----RSHPLSPQIYALLESLIDR 648



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 135/448 (30%), Positives = 223/448 (49%), Gaps = 69/448 (15%)

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           M R G  +D++T P VLKACG L     G+  HG +   GF  +VF+ N L+ MYS+CG 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 163 MGCARSVFE---GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM--------------- 204
           +  A  +F+      I D++SWN ++   V+      A ++F +M               
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 205 ----------------PQK--------------DAISWSIMIDGYRKKKGDISSARILFE 234
                           PQ               D    + +ID Y  K G + +A  +F 
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAY-AKCGLMENAVKVFN 179

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV----FSWSIMIDGYAQHGNPKE 290
            M  KD++SWN+M+ GY++ G+  AA +LF  M + N+     +W+ +I GY+Q G   E
Sbjct: 180 MMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHE 239

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF-MKRSRITM--------- 340
           AL +FR+M+  G  P+ ++++  +SACA +GA   G  IH + +K   +T+         
Sbjct: 240 ALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDE 299

Query: 341 DMIVQTALIDMYMKCGSLDEARRIF--YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
           D++V  ALIDMY KC S   AR IF    + ++NV+++ VMI G    G   +ALK F +
Sbjct: 300 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 359

Query: 399 METE--GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS-CLVDLLS 455
           M +E  G+  +      +L+AC+H      G +I   + RH   +      + CL+++ S
Sbjct: 360 MISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYS 419

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLL 483
           + G+++ A ++ +SM  K  ++ W +++
Sbjct: 420 KCGDVDTARHVFDSMSQKSAIS-WTSMM 446


>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
 gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
          Length = 562

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 193/553 (34%), Positives = 302/553 (54%), Gaps = 15/553 (2%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           ++S L+  KT   + QI + + T  ++      S+L+    +    +++ A  +F+QI Q
Sbjct: 8   VMSFLEKCKTMKELKQIHSLMITTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQ 67

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
              Y+ N+MI+GY    +   AL  Y  M+RKG   D++T+PFVLK C ++  LV G  +
Sbjct: 68  RTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSV 127

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           H  +VK GF  DV+  + L+ MY  CG +     VFE     ++V+W  ++ GFV   + 
Sbjct: 128 HNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQP 187

Query: 195 GKAREVFDEMPQKDAISWSIMIDGYRK---KKGDISSARIL-----------FEHMPIKD 240
            +A  +F +M  +      I +        +  DI + +++           F+     +
Sbjct: 188 KEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFN 247

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
           +I   +++D YAK G LV A+ LF++MP+RN+  W+ MI  Y+Q+G   EAL LF +M  
Sbjct: 248 VILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQYGRGAEALRLFVDMEM 307

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
            G  P+  + +  ISAC  +G    G+ +H    R+     + + TAL+DMY K G  D 
Sbjct: 308 AGFVPNKATFLSVISACTHMGFRSTGRSLHARALRASFHEFVAIGTALMDMYAKAGDADT 367

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKDDLIFLGVLIACS 419
           A +IF  + KK+V+++  MI+GL + G G+EAL  F +ME E  +  D + ++ VL ACS
Sbjct: 368 ALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITYIAVLWACS 427

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           H GL  EG + F SM    GIEP +EHY C++DLLSRAG  ++A  ++  MP +PN  + 
Sbjct: 428 HLGLVEEGQKQFTSMTEVYGIEPTMEHYGCMIDLLSRAGHSKEAEELLMKMPTQPNATIL 487

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
            ++L  C  + NV LA  V   +VEL+    G+YVLLSNI+A A  W+     R M++ +
Sbjct: 488 SSILNGCEMYGNVGLANRVKSHIVELENSSSGVYVLLSNIHAKACNWQEMKLARDMLKHK 547

Query: 540 KIKKETGRSVIEI 552
            I K  G S +EI
Sbjct: 548 NIGKTLGNSFVEI 560


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 186/518 (35%), Positives = 300/518 (57%), Gaps = 25/518 (4%)

Query: 62  MDQAERLFN--QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVL 119
           + +AE LF   +  + N  +   M+ GY Q+ +  KA+ F+  M  +G+  + YT+P +L
Sbjct: 213 VSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTIL 272

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
            AC  ++    G ++HG +VK GF  +V+V + L+ MY+KCG +  A+++ E  E  D+V
Sbjct: 273 TACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVV 332

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK-------GDISSARIL 232
           SWN ++ GFV  G   +A  +F  M  ++     + ID Y           G I+   + 
Sbjct: 333 SWNSLMVGFVRHGLEEEALRLFKNMHGRN-----MKIDDYTFPSVLNCCVVGSINPKSVH 387

Query: 233 -------FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
                  FE+     L+S N+++D YAK GD+  A  +F +M E++V SW+ ++ GYAQ+
Sbjct: 388 GLIIKTGFENYK---LVS-NALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQN 443

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
            + +E+L +F +M   GV PD   V   +SACA++  L+ GK +H+   +S +     V 
Sbjct: 444 NSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVY 503

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
            +L+ MY KCG LD+A  IF SM  K+VI++  +I G   NG G  +LK +  M + G  
Sbjct: 504 NSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTR 563

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
            D + F+G+L ACSH+GL  EG + FQ M +  GI+P  EHY+C++DL  R+G+L++A  
Sbjct: 564 PDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQ 623

Query: 466 IVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM 525
           +++ M +KP+  +W +LL ACR H+N+ LAE     L EL+  +   YV+LSN+Y+ +  
Sbjct: 624 LLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRK 683

Query: 526 WEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           W    +IRK+M+ + I KE G S +EI+  +  F+S +
Sbjct: 684 WNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDD 721



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 133/493 (26%), Positives = 225/493 (45%), Gaps = 70/493 (14%)

Query: 45  FTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIR------------------- 85
           +  +QLL  L+    +N   A +LF+++ Q + Y  NTMI                    
Sbjct: 66  YQTNQLLNQLSKSGQVN--DARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCS 123

Query: 86  ------------GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
                       GY +     +A   + +M+ +G     +T   VL+ C  L  +  G  
Sbjct: 124 CKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEM 183

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI--KDLVSWNLVLRGFVEC 191
           IHG VVK GF  +VFVV GL+ MY+KC  +  A  +F+G E   K+ V W  ++ G+ + 
Sbjct: 184 IHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQN 243

Query: 192 GEMGKAREVFDEMPQKD-------------------AISWSIMIDGYRKKKGDISSARIL 232
           G+  KA E F  M  +                    A  +   + G+  K G  S+  + 
Sbjct: 244 GDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQ 303

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
                       ++++D YAK GDL  A+ +   M + +V SW+ ++ G+ +HG  +EAL
Sbjct: 304 ------------SALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEAL 351

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            LF+ M  + ++ D  +    ++ C  VG+++  K +H  + ++      +V  AL+DMY
Sbjct: 352 RLFKNMHGRNMKIDDYTFPSVLNCCV-VGSIN-PKSVHGLIIKTGFENYKLVSNALVDMY 409

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            K G +D A  +F  M +K+VIS+  ++ G   N   EE+LK F  M   G+  D  I  
Sbjct: 410 AKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVA 469

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            +L AC+   L   G ++     +  G+      Y+ LV + ++ G L+ A  I  SM +
Sbjct: 470 SILSACAELTLLEFGKQVHLDFIKS-GLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQV 528

Query: 473 KPNLALWGTLLLA 485
           K ++  W  +++ 
Sbjct: 529 K-DVITWTAIIVG 540



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 160/319 (50%), Gaps = 10/319 (3%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  A+ +   +   +    N+++ G+ +    ++AL  + NM  + + +D+YT+P VL 
Sbjct: 315 DLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLN 374

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C  ++G +    +HG ++K GF     V N L+ MY+K G M CA +VFE    KD++S
Sbjct: 375 CC--VVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVIS 432

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFE-HMP-I 238
           W  ++ G+ +     ++ ++F +M          ++        +++      + H+  I
Sbjct: 433 WTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFI 492

Query: 239 KDLISW-----NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
           K  + W     NS++  YAK G L  A  +F  M  ++V +W+ +I GYAQ+G  + +L 
Sbjct: 493 KSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLK 552

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMY 352
            +  M+  G RPD I+ +G + AC+  G +D G K+     K   I         +ID++
Sbjct: 553 FYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLF 612

Query: 353 MKCGSLDEARRIFYSMTKK 371
            + G LDEA+++   M  K
Sbjct: 613 GRSGKLDEAKQLLDQMDVK 631



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 177/378 (46%), Gaps = 46/378 (12%)

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
           ++  N L+   SK G +  AR +F+    KD  SWN ++  +V  G + +ARE+FD    
Sbjct: 65  IYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSC 124

Query: 207 KDAISWSIMIDGYRKKKGDISSARILFEHMPIK-------------------DLISWNSM 247
           K +I+WS +I GY  K G    A  LF  M ++                    LI    M
Sbjct: 125 KSSITWSSIISGY-CKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEM 183

Query: 248 IDG--------------------YAKIGDLVAAQQLFN--EMPERNVFSWSIMIDGYAQH 285
           I G                    YAK   +  A+ LF   E   +N   W+ M+ GYAQ+
Sbjct: 184 IHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQN 243

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
           G+  +A+  FR M  QGV  +  +    ++AC+ V A   G+ +H F+ +S    ++ VQ
Sbjct: 244 GDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQ 303

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
           +AL+DMY KCG L  A+ +  +M   +V+S+N ++ G   +G  EEAL+ F  M    + 
Sbjct: 304 SALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMK 363

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
            DD  F  VL  C    + +   +    +    G E      + LVD+ ++ G+++ A  
Sbjct: 364 IDDYTFPSVLNCCV---VGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYT 420

Query: 466 IVESMPMKPNLALWGTLL 483
           + E M ++ ++  W +L+
Sbjct: 421 VFEKM-LEKDVISWTSLV 437



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 143/270 (52%), Gaps = 4/270 (1%)

Query: 222 KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           K G ++ AR LF+ MP KD  SWN+MI  Y  +G LV A++LF+    ++  +WS +I G
Sbjct: 77  KSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISG 136

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
           Y + G   EA  LFR M  +G +    ++   +  C+ +G +  G+ IH F+ ++    +
Sbjct: 137 YCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGN 196

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSM--TKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
           + V T L+DMY KC  + EA  +F  +   +KN + +  M+ G   NG G +A++ F  M
Sbjct: 197 VFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYM 256

Query: 400 ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
             +G+  +   F  +L ACS       G ++   + +  G    +   S LVD+ ++ G+
Sbjct: 257 HAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKS-GFGSNVYVQSALVDMYAKCGD 315

Query: 460 LEQALNIVESMPMKPNLALWGTLLLACRNH 489
           L+ A N++E+M    ++  W +L++    H
Sbjct: 316 LKNAKNMLETME-DDDVVSWNSLMVGFVRH 344



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 118/241 (48%), Gaps = 15/241 (6%)

Query: 59  TLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFV 118
           T +MD A  +F ++ + +     +++ GY Q+++ +++L  + +M+  G+  D +    +
Sbjct: 412 TGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASI 471

Query: 119 LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDL 178
           L AC  L  L  G ++H + +K G      V N L+ MY+KCG +  A ++F   ++KD+
Sbjct: 472 LSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDV 531

Query: 179 VSWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARILFE 234
           ++W  ++ G+ + G+   + + +D M     + D I++  ++       G +   R  F+
Sbjct: 532 ITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFAC-SHAGLVDEGRKYFQ 590

Query: 235 HMPIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEM---PERNVFSWSIMIDGYAQHG 286
            M     I      +  MID + + G L  A+QL ++M   P+  V  W  ++     H 
Sbjct: 591 QMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATV--WKSLLSACRVHE 648

Query: 287 N 287
           N
Sbjct: 649 N 649


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 194/581 (33%), Positives = 305/581 (52%), Gaps = 84/581 (14%)

Query: 76   NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
            N  + N+++R        ++AL  Y  M++ G+  D +T+P V++AC ++        +H
Sbjct: 937  NLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVH 996

Query: 136  GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV------ 189
            G VV+MGF  ++ V N L+GMY K G M  AR VFE   ++  VSWN ++ G+       
Sbjct: 997  GHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCH 1056

Query: 190  -----------------------------ECGEMGKAREVFDEMPQKD--------AISW 212
                                          CG+  +  E+F  M  +         A+  
Sbjct: 1057 GASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVL 1116

Query: 213  SIMID-----------GY-------------------RKKKGDISSARILFEHMPIKDLI 242
            S+ +D           GY                     K G++++ARILF  +  K+++
Sbjct: 1117 SVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIV 1176

Query: 243  SWNSMIDGYAKIGDLVAAQQLF------NEMP--ERNVFSWSIMIDGYAQHGNPKEALYL 294
            SWN++I  YA +G    A  +F      +E P    NV SWS +I G+A  G  +EAL L
Sbjct: 1177 SWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALEL 1236

Query: 295  FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
            FR M    V+ + +++   +S CA++ AL LG+ IH  + RS +  +++V   LI+MY K
Sbjct: 1237 FRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTK 1296

Query: 355  CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
             GS  E   +F  +  K++IS+N M+AG G++G GE A++ F QM  +G   D + F+ V
Sbjct: 1297 SGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAV 1356

Query: 415  LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
            L ACSH+GL  EG  +F  M +   +EP++EHY+C+VDLL RAG L++A  +V+SMP++P
Sbjct: 1357 LSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEP 1416

Query: 475  NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
            N  +WG LL +CR H+N  +AE     +  L ++  G Y+LLSNIYA +G WE + ++R 
Sbjct: 1417 NACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRI 1476

Query: 535  MMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELV 575
              + + +KK  G+S I++   +  F +G   + Q  ELE V
Sbjct: 1477 SAKTKGLKKTPGQSWIQVKKKVYMFSAG---NTQHAELEEV 1514



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 149/343 (43%), Gaps = 49/343 (14%)

Query: 74   QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
            +PN     +++  + +     + +  +  M+ +G+         VL     L    EG  
Sbjct: 1071 EPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKV 1130

Query: 134  IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
            IHG VVK GF   +FV N LI +Y K G++  AR +F   + K++VSWN ++  + + G 
Sbjct: 1131 IHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGW 1190

Query: 194  MGKAREVF------DEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK------ 239
              +A  +F      DE P  + + +SWS +I G+   KG    A  LF  M +       
Sbjct: 1191 CDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGF-ASKGQGEEALELFRRMQLAKVKANS 1249

Query: 240  ---------------------------------DLISWNSMIDGYAKIGDLVAAQQLFNE 266
                                             +++  N +I+ Y K G       +F +
Sbjct: 1250 VTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEK 1309

Query: 267  MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326
            +  +++ SW+ M+ GY  HG  + A+  F +M+  G  PD ++ +  +SAC+  G +  G
Sbjct: 1310 IENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEG 1369

Query: 327  KWIHVFM-KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
            + +   M K  R+   M     ++D+  + G L EA ++  SM
Sbjct: 1370 RELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSM 1412



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 164/352 (46%), Gaps = 49/352 (13%)

Query: 133  EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK---DLVSWNLVLRGFV 189
            +IH +++  G     F+   ++ +Y+  G +  A+ VFE S I+   +L+ WN +LR  V
Sbjct: 890  QIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANV 949

Query: 190  ECGEMGKAREVFDEMPQ----KDAISWSIMID-----GYRK------------------- 221
              G   +A E++  M +     D  ++ ++I      G RK                   
Sbjct: 950  AHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLH 1009

Query: 222  ----------KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP--- 268
                      K G +  AR +FE M ++  +SWN+M+ GYA   D   A ++F  M    
Sbjct: 1010 VGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAG 1069

Query: 269  -ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK 327
             E N+ +W+ ++  +A+ G   E + LF  M  +G+     ++   +S    + A D GK
Sbjct: 1070 LEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGK 1129

Query: 328  WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
             IH ++ +      + V+ +LI +Y K G+++ AR +F  +  KN++S+N +I+     G
Sbjct: 1130 VIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLG 1189

Query: 388  FGEEALKCFAQME-TEGIP---KDDLIFLGVLIACSHSGLATEGYRIFQSMK 435
            + +EA   F Q+E T+  P    + + +  V+   +  G   E   +F+ M+
Sbjct: 1190 WCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQ 1241



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 106/229 (46%), Gaps = 13/229 (5%)

Query: 74   QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
            +PN    + +I G+      ++AL  +  M+   +  ++ T   VL  C  L  L  G E
Sbjct: 1211 RPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGRE 1270

Query: 134  IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
            IHG VV+     ++ V NGLI MY+K G       VFE  E KDL+SWN ++ G+   G 
Sbjct: 1271 IHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGL 1330

Query: 194  MGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKD------LIS 243
               A   FD+M     + D +++  ++       G ++  R LF+ M IK+      +  
Sbjct: 1331 GENAIRTFDQMIKDGFEPDGVTFVAVLSAC-SHAGLVAEGRELFDKM-IKEFRVEPQMEH 1388

Query: 244  WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEA 291
            +  M+D   + G L  A ++   MP E N   W  +++    H N + A
Sbjct: 1389 YACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVA 1437



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 130/289 (44%), Gaps = 12/289 (4%)

Query: 251  YAKIGDLVAAQQLFNEMPER---NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
            YA  G +  AQ++F   P     N+  W+ ++     HG  +EAL ++  M   GV  D 
Sbjct: 914  YAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADG 973

Query: 308  ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
             +    I ACA +G+  L + +H  +       ++ V   L+ MY K G +D+AR++F  
Sbjct: 974  FTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFER 1033

Query: 368  MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
            M  ++ +S+N M++G  +N     A + F  M + G+  + + +  +L + +  G   E 
Sbjct: 1034 MAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVET 1093

Query: 428  YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN----LALWGTLL 483
              +F  M R  GI    E  + ++ +       ++   ++    +K      L +  +L+
Sbjct: 1094 MELFGRM-RMRGIGATAEALAVVLSVSVDLAAFDEG-KVIHGYVVKGGFENYLFVKNSLI 1151

Query: 484  LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
                 H NV  A ++    +E+K  +   +  L + YAD G  + A  I
Sbjct: 1152 CLYGKHGNVNAARIL---FLEIKTKNIVSWNALISSYADLGWCDEAFAI 1197


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 204/594 (34%), Positives = 311/594 (52%), Gaps = 73/594 (12%)

Query: 61  NMDQAERLFNQIYQ---PNTYMHNTMIRGYTQSSNPQKALSFYVNM------KRKGLLVD 111
           ++++A  +F++I Q    +    N+++  + +SSN   AL  +  M      K      D
Sbjct: 167 SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 226

Query: 112 NYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE 171
             +   +L ACG L  + +  E+HG  ++ G   DVFV N LI  Y+KCG M  A  VF 
Sbjct: 227 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFN 286

Query: 172 GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDIS 227
             E KD+VSWN ++ G+ + G    A E+F  M ++    D ++W+ +I GY  ++G   
Sbjct: 287 MMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGY-SQRGCSH 345

Query: 228 SARILFEHMPI------------------------------------------------- 238
            A  +F  M                                                   
Sbjct: 346 EALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGED 405

Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMP--ERNVFSWSIMIDGYAQHGNPKEALYLFR 296
           +DL+ +N++ID Y+K     AA+ +F+++P  ERNV +W++MI G+AQ+G+  +AL LF 
Sbjct: 406 EDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFV 465

Query: 297 EMLCQ--GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI--TMDMIVQTALIDMY 352
           EM+ +  GV P+  ++   + ACA + A+ +GK IH ++ R     +    V   LI+MY
Sbjct: 466 EMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMY 525

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCG +D AR +F SM++K+ IS+  M+ G GM+G G EAL  F +M   G   DD+ FL
Sbjct: 526 SKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFL 585

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            VL ACSH G+  +G   F SM    G+ P+ EHY+  +DLL+R G L++A   V+ MPM
Sbjct: 586 VVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPM 645

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           +P   +W  LL ACR H NV LAE  +  LVE+ A++ G Y L+SNIYA AG W+   RI
Sbjct: 646 EPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARI 705

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586
           R +M+K  IKK  G S ++       F  G+    +S  L   I + +++ I+R
Sbjct: 706 RHLMKKSGIKKRPGCSWVQGQKGTASFFVGD----RSHPLSPQIYALLESLIDR 755



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 147/514 (28%), Positives = 247/514 (48%), Gaps = 72/514 (14%)

Query: 40  LITEPFTLSQLLMSLTSPNTLN---MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKA 96
           L +EPF   + L +    + L     D A  +  ++        N +IR + +      A
Sbjct: 42  LPSEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSA 101

Query: 97  LSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGM 156
           ++    M R G  +D++T P VLKACG L     G+  HG +   GF  +VF+ N L+ M
Sbjct: 102 INVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAM 161

Query: 157 YSKCGHMGCARSVFE---GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM--------- 204
           YS+CG +  A  +F+      I D++SWN ++   V+      A ++F +M         
Sbjct: 162 YSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPT 221

Query: 205 ----------------------PQK--------------DAISWSIMIDGYRKKKGDISS 228
                                 PQ               D    + +ID Y  K G + +
Sbjct: 222 NERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAY-AKCGLMEN 280

Query: 229 ARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV----FSWSIMIDGYAQ 284
           A  +F  M  KD++SWN+M+ GY++ G+  AA +LF  M + N+     +W+ +I GY+Q
Sbjct: 281 AVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQ 340

Query: 285 HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF-MKRSRITM--- 340
            G   EAL +FR+M+  G  P+ ++++  +SACA +GA   G  IH + +K   +T+   
Sbjct: 341 RGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDND 400

Query: 341 ------DMIVQTALIDMYMKCGSLDEARRIF--YSMTKKNVISYNVMIAGLGMNGFGEEA 392
                 D++V  ALIDMY KC S   AR IF    + ++NV+++ VMI G    G   +A
Sbjct: 401 FGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDA 460

Query: 393 LKCFAQMETE--GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS-C 449
           LK F +M +E  G+  +      +L+AC+H      G +I   + RH   +      + C
Sbjct: 461 LKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANC 520

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
           L+++ S+ G+++ A ++ +SM  K  ++ W +++
Sbjct: 521 LINMYSKCGDVDTARHVFDSMSQKSAIS-WTSMM 553


>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 554

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 186/522 (35%), Positives = 284/522 (54%), Gaps = 43/522 (8%)

Query: 83  MIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMG 142
           M++   +S +  K L+ +  ++ +GL  DN+T P VLK+ G L  ++EG ++HG  VK G
Sbjct: 1   MLKSLAESKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTG 60

Query: 143 FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFD 202
              D +V N L+GMY+  G M     VF+    +D+VSWN ++  +V  G    A  VF 
Sbjct: 61  LESDSYVCNSLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQ 120

Query: 203 EMPQKDAI---------------------------------------SWSIMIDGYRKKK 223
            M ++  +                                       + + ++D +  K 
Sbjct: 121 RMSRESNLKADEGTIVSTLSACSVLKNLEIGERIYRYVVTEFEMSVRTGNALVDMF-CKC 179

Query: 224 GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
           G +  AR +F+ M  K++  W SM+ GY   G    A++LF   P ++V  W+ M++GY 
Sbjct: 180 GCLDKARAIFDSMRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYV 239

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
           Q     EAL LFR M    +RPD   ++  ++ CAQ GAL+ GKWIH +++ +R+T+D +
Sbjct: 240 QFNRFDEALELFRCMQTARIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIRENRVTVDKV 299

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           V TAL+DMY KCG ++ A  +FY M +++  S+  +I GL  NG    AL  + +ME  G
Sbjct: 300 VGTALVDMYAKCGCIETALGVFYEMKERDTASWTSLIYGLATNGMSGRALDLYYEMENVG 359

Query: 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
           +  DD+ F+ VL ACSH G   EG RIF SM     I+PK EHYSCL+DLL RAG L++A
Sbjct: 360 VRLDDITFVAVLTACSHGGFVAEGRRIFYSMTERHKIQPKSEHYSCLIDLLCRAGLLDEA 419

Query: 464 LNIVESMPMKPNLAL---WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520
             +++ M  + +  L   + +LL A RN+ NV +AE V E L +++  D   + LL+++Y
Sbjct: 420 EELIDKMHGERDKTLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVY 479

Query: 521 ADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
           A A  WE    +R+ M+   I+K  G S IE+DG   EF+ G
Sbjct: 480 ASANRWEDVTNVRRKMKDLGIRKFPGCSSIEVDGVSHEFIVG 521



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 109/242 (45%), Gaps = 14/242 (5%)

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
           D+A  LF +    +  +   M+ GY Q +   +AL  +  M+   +  DN+    +L  C
Sbjct: 214 DEARELFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTARIRPDNFVLVSLLTGC 273

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
                L +G  IHG + +     D  V   L+ MY+KCG +  A  VF   + +D  SW 
Sbjct: 274 AQTGALEQGKWIHGYIRENRVTVDKVVGTALVDMYAKCGCIETALGVFYEMKERDTASWT 333

Query: 183 LVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHMPI 238
            ++ G    G  G+A +++ EM     + D I++  ++       G ++  R +F  M  
Sbjct: 334 SLIYGLATNGMSGRALDLYYEMENVGVRLDDITFVAVLTAC-SHGGFVAEGRRIFYSMTE 392

Query: 239 KDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP-ERN---VFSWSIMIDGYAQHGNPK 289
           +  I      ++ +ID   + G L  A++L ++M  ER+   V  +  ++     +GN K
Sbjct: 393 RHKIQPKSEHYSCLIDLLCRAGLLDEAEELIDKMHGERDKTLVPVYCSLLSAARNYGNVK 452

Query: 290 EA 291
            A
Sbjct: 453 IA 454


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 191/522 (36%), Positives = 300/522 (57%), Gaps = 39/522 (7%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A ++F+ + + +T + NTMI G  ++     ++  +  M   G+ VD+ T   VL A   
Sbjct: 162 ARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAE 221

Query: 125 LMGLVEGTEIHGEVVKMGF-LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
           L  L  G  I    +K+GF  CD +V+ GLI +YSKCG +  AR +F      DL+++N 
Sbjct: 222 LQELKVGMGIQCLALKIGFGFCD-YVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNA 280

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARIL--------FEH 235
           ++ GF   G    + ++F E+          +  G R     +SS+ I+        F H
Sbjct: 281 MISGFTANGGTECSVKLFREL----------LFSGER-----VSSSTIVGLIPLHSPFGH 325

Query: 236 MP---------IKDLISWNSMIDG-----YAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           +          +K  I  N  +       Y K+ ++  A+ LF+E PE+ V +W+ MI G
Sbjct: 326 LHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISG 385

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
           Y Q+G+ + A+ LF+EM+     P+ +++   +SACAQ+G+L  GKW+H  +K   +  +
Sbjct: 386 YTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPN 445

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
           + V TAL+DMY KCG++ EA ++F SM++KN +++N MI G G++G+G EALK + +M  
Sbjct: 446 IYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLH 505

Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
            G     + FL VL ACSH+GL  EG  IF +M     IEP +EHY+C+VD+L R+G+LE
Sbjct: 506 LGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLE 565

Query: 462 QALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521
           +AL  ++ MP++P  A+WGTLL AC  H++  +A +  E L EL     G YVLLSNIY+
Sbjct: 566 KALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYS 625

Query: 522 DAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
               +  A  IR++++KRK+ K  G ++IE++G    FVSG+
Sbjct: 626 VERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGD 667



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 127/482 (26%), Positives = 229/482 (47%), Gaps = 15/482 (3%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           +N L SL+  + T  H+ Q  AQ   N    +  TL++L   L   +      A  LF  
Sbjct: 12  RNTLFSLINKASTFPHLAQTHAQFILNGYRFDLATLTKLTQKLFDFSATR--HARALFFS 69

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK-GLLVDNYTYPFVLKACGVLMGLVE 130
           + +P+ ++ N ++RG++ + +P  ++S Y +++R   L  DN+TY F + AC     L+ 
Sbjct: 70  VPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLML 129

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
              +H   +  G+  +VFV + L+ +Y K   +  AR VF+G   +D V WN ++ G V+
Sbjct: 130 ---LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVK 186

Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW------ 244
                 + ++F EM        S  +        ++   ++      +   I +      
Sbjct: 187 NCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYV 246

Query: 245 -NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
              +I  Y+K GD+  A+ LF  +   ++ +++ MI G+  +G  + ++ LFRE+L  G 
Sbjct: 247 LTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGE 306

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
           R    +++G I   +  G L L   IH F  +S I ++  V TA   +Y K   +D AR 
Sbjct: 307 RVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARH 366

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           +F    +K V+++N MI+G   NG  E A+  F +M       + +    +L AC+  G 
Sbjct: 367 LFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGS 426

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
            + G  +   +K    +EP +   + LVD+ ++ G + +A  + +SM  K N   W T++
Sbjct: 427 LSFGKWVHHLIKSE-NLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEK-NTVTWNTMI 484

Query: 484 LA 485
             
Sbjct: 485 FG 486



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 147/309 (47%), Gaps = 8/309 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A  LF +I +P+   +N MI G+T +   + ++  +  +   G  V + T   ++ 
Sbjct: 259 DVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIP 318

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
                  L     IHG  VK G + +  V      +Y+K   +  AR +F+ S  K +V+
Sbjct: 319 LHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVA 378

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI-LFEHMPIK 239
           WN ++ G+ + G    A  +F EM + +    ++ I         + S     + H  IK
Sbjct: 379 WNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIK 438

Query: 240 ------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
                 ++    +++D YAK G++  A QLF+ M E+N  +W+ MI GY  HG   EAL 
Sbjct: 439 SENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALK 498

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI-HVFMKRSRITMDMIVQTALIDMY 352
           L+ EML  G  P  ++ +  + AC+  G +  G+ I H  + + RI   +     ++D+ 
Sbjct: 499 LYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDIL 558

Query: 353 MKCGSLDEA 361
            + G L++A
Sbjct: 559 GRSGQLEKA 567



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/448 (21%), Positives = 189/448 (42%), Gaps = 41/448 (9%)

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           + H + +  G+  D+  +  L            AR++F      D+  +N+++RGF    
Sbjct: 30  QTHAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSLND 89

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWN-----SM 247
               +  ++  + +   +S       +           +L     I D    N     ++
Sbjct: 90  SPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLMLLHAHSIIDGYGSNVFVGSAL 149

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           +D Y K   +V A+++F+ MPER+   W+ MI+G  ++    +++ LFREM+  GVR D 
Sbjct: 150 VDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDS 209

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
            +V   + A A++  L +G  I     +        V T LI +Y KCG ++ AR +F  
Sbjct: 210 STVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRR 269

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL----------IA 417
           + + ++I+YN MI+G   NG  E ++K F ++   G        +G++          +A
Sbjct: 270 INRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLA 329

Query: 418 CSHSGLATEGYRIFQ-----------------SMKRHC---GIEPKLEHYSCLVDLLSRA 457
           CS  G   +   I                    + RH      E  +  ++ ++   ++ 
Sbjct: 330 CSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQN 389

Query: 458 GELEQALNIVESM---PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYV 514
           G  E A+++ + M      PN     T+L AC    +++  +  V  L++ +  +  +YV
Sbjct: 390 GSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGK-WVHHLIKSENLEPNIYV 448

Query: 515 --LLSNIYADAGMWEHALRIRKMMRKRK 540
              L ++YA  G    A ++   M ++ 
Sbjct: 449 STALVDMYAKCGNISEAWQLFDSMSEKN 476



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 104/221 (47%), Gaps = 11/221 (4%)

Query: 58  NTLN-MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYP 116
           N LN +D A  LF++  +      N MI GYTQ+ + + A+S +  M +     +  T  
Sbjct: 356 NKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTIT 415

Query: 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK 176
            +L AC  L  L  G  +H  +       +++V   L+ MY+KCG++  A  +F+    K
Sbjct: 416 TILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEK 475

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQ----KDAISWSIMIDGYRKKKGDISSARIL 232
           + V+WN ++ G+   G   +A ++++EM        A+++  ++       G +     +
Sbjct: 476 NTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYAC-SHAGLVGEGEEI 534

Query: 233 FEHM----PIKDLIS-WNSMIDGYAKIGDLVAAQQLFNEMP 268
           F +M     I+ LI  +  M+D   + G L  A +   +MP
Sbjct: 535 FHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMP 575


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 195/528 (36%), Positives = 309/528 (58%), Gaps = 14/528 (2%)

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM-KRKGLLVDNYTYPFVLKACGVLM 126
           +F+++ + N +  N ++  YT++   + A+S +  +        DN+T P V+KAC  L+
Sbjct: 163 VFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLL 222

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCA-RSVFEGSEIKDLVSWNLVL 185
            L  G  IHG   KM  + DVFV N LI MY KCG +  A + VF+  + K + SWN +L
Sbjct: 223 DLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALL 282

Query: 186 RGFVECGEMGKAREVFDEMPQKD-AISW----SIMIDGYRKKK---GDISSARILFEHMP 237
            G+ +  +  KA +++ +M        W    S+++   R K    G+      L   + 
Sbjct: 283 CGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLA 342

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
           +   I   S++  Y   G   AAQ LF+ M  R++ SW++MI GY+Q+G P EA+ LFR+
Sbjct: 343 VDPFIGI-SLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQ 401

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
           ML  G++P  I++M    AC+Q+ AL LGK +H F  ++ +T D+ V +++IDMY K G 
Sbjct: 402 MLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGC 461

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
           +  ++RIF  + +K+V S+NV+IAG G++G G+EAL+ F +M   G+  DD  F G+L+A
Sbjct: 462 IGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMA 521

Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
           CSH+GL  +G   F  M     IEPKLEHY+C+VD+L RAG ++ AL ++E MP  P+  
Sbjct: 522 CSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSR 581

Query: 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537
           +W +LL +CR H N+ L E V   L+EL+ +    YVL+SN++A +G W+   R+R  M+
Sbjct: 582 IWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMK 641

Query: 538 KRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
              ++K+ G S IE+ G +  F+ G   D    ELE V +++ +  ++
Sbjct: 642 DIGLQKDAGCSWIEVGGKVHNFLIG---DEMLPELEEVRETWRRLEVK 686



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 105/349 (30%), Positives = 184/349 (52%), Gaps = 12/349 (3%)

Query: 30  QILAQLTTN-DLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYT 88
           QI+  + T  DL+++ F +   L+++     L  +  +R+F+ +        N ++ GY 
Sbjct: 228 QIIHGMATKMDLVSDVF-VGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYA 286

Query: 89  QSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF 148
           Q+S+P+KAL  Y+ M   GL  D +T   +L AC  +  L  G EIHG  ++ G   D F
Sbjct: 287 QNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPF 346

Query: 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKD 208
           +   L+ +Y  CG    A+ +F+G E + LVSWN+++ G+ + G   +A  +F +M    
Sbjct: 347 IGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDG 406

Query: 209 AISWSIMIDGYRKKKGDISSARI--------LFEHMPIKDLISWNSMIDGYAKIGDLVAA 260
              + I I         +S+ R+        L  H+  +D+   +S+ID YAK G +  +
Sbjct: 407 IQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHL-TEDIFVSSSIIDMYAKGGCIGLS 465

Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
           Q++F+ + E++V SW+++I GY  HG  KEAL LF +ML  G++PD  +  G + AC+  
Sbjct: 466 QRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHA 525

Query: 321 GALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           G ++ G ++ +  +    I   +   T ++DM  + G +D+A R+   M
Sbjct: 526 GLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEM 574



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 120/447 (26%), Positives = 221/447 (49%), Gaps = 29/447 (6%)

Query: 84  IRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYP----FVLKACGVLMGLVEGTEIHGEVV 139
           I+   +S N ++AL F +  +   +++D+         +L+ACG    +  G  +H  V 
Sbjct: 74  IKKLCESGNLKEALDF-LQRESDDVVLDSAQRSEAMGVLLQACGQRKDIEVGRRLHEMVS 132

Query: 140 KMGFLCDVFVVNG-LIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAR 198
                C+ FV+N  +I MYS CG    +R VF+    K+L  WN ++  +        A 
Sbjct: 133 ASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAM 192

Query: 199 EVFDEM-----PQKDAISWSIMIDGYRKKKG--DISSARILFEHMPIKDLIS----WNSM 247
            +F E+      + D  +   +I   +   G  D+   +I+       DL+S     N++
Sbjct: 193 SIFSELISVTEHKPDNFTLPCVI---KACAGLLDLGLGQIIHGMATKMDLVSDVFVGNAL 249

Query: 248 IDGYAKIGDLV--AAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           I  Y K G LV  A +++F+ M  + V SW+ ++ GYAQ+ +P++AL L+ +M   G+ P
Sbjct: 250 IAMYGKCG-LVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDP 308

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D  ++   + AC+++ +L  G+ IH F  R+ + +D  +  +L+ +Y+ CG    A+ +F
Sbjct: 309 DWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLF 368

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
             M  ++++S+NVMIAG   NG  +EA+  F QM ++GI   ++  + V  ACS      
Sbjct: 369 DGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALR 428

Query: 426 EGYRIFQ-SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            G  +   ++K H  +   +   S ++D+ ++ G +  +  I + +  K ++A W  ++ 
Sbjct: 429 LGKELHCFALKAH--LTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREK-DVASWNVIIA 485

Query: 485 ACRNHQNVTLAEVVVEGLVE--LKADD 509
               H     A  + E ++   LK DD
Sbjct: 486 GYGIHGRGKEALELFEKMLRLGLKPDD 512


>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 542

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 193/568 (33%), Positives = 308/568 (54%), Gaps = 62/568 (10%)

Query: 7   AKFSLKNPLVSLLQISKTT-THILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQA 65
           +KF   +P +++LQ   TT  H  QI   +    L   P   ++ L    SP+  N++ A
Sbjct: 22  SKFISNHPCLTMLQNHCTTINHFHQIYPHIIKTGLTLNPIASTRALTFCASPSG-NINYA 80

Query: 66  ERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVL 125
            +LF ++  PN Y  NT+IR +++SS PQ A+S +V+M    +     TYP V KA   L
Sbjct: 81  YKLFVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQL 140

Query: 126 MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL 185
                G ++HG VVK+G   D F+ N +I MY+  G M  AR VF+              
Sbjct: 141 GHAHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFD-------------- 186

Query: 186 RGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWN 245
                    GK  E++D                                     D+++ N
Sbjct: 187 ---------GKKLELYDH------------------------------------DVVAIN 201

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           SMI GYAK G++  ++ LF++M  R   SW+ MI GY ++G   EAL LF +M  +G   
Sbjct: 202 SMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEV 261

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
              +++  ++ACA +GAL  GKW+H ++KR+   +++IV TA+IDMY KCGS++ A  +F
Sbjct: 262 SEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVF 321

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI-FLGVLIACSHSGLA 424
            +  ++ +  +N +I GL MNG   EA + F+++E+  + K D + F+GVL AC H G  
Sbjct: 322 ETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTACKHLGAI 381

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            +    F+ M     IEP ++HY+C+VD+L +AG LE+A  +++ MP+KP+  +WG+LL 
Sbjct: 382 NKARDYFELMMNKYEIEPSIKHYTCIVDVLGQAGLLEEAEELIKGMPLKPDAIIWGSLLS 441

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           +CR H+NV +A    + + EL   D   YVL+SN++A +  +E A+  R +M++   +KE
Sbjct: 442 SCRKHRNVQIARRAAQRVYELNPSDASGYVLMSNVHAASNKFEEAIEQRLLMKENLTEKE 501

Query: 545 TGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            G S IE+ G + EF++G     +++E+
Sbjct: 502 PGCSSIELYGEVHEFIAGGRLHPKTQEI 529


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 190/586 (32%), Positives = 317/586 (54%), Gaps = 24/586 (4%)

Query: 17  SLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAER---LFNQIY 73
           +L+ ++ T  H+ Q+   L  + L  + F ++ LL       TL   Q      LF+   
Sbjct: 18  TLISVASTFNHLKQVHVSLIHHHLHHDTFLVNLLL-----KRTLFFRQTHYSFLLFSHTQ 72

Query: 74  QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
            PN +++NT+I G+  +    + L  ++++++ GL +  +T+P VLKAC        G +
Sbjct: 73  FPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGID 132

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           +H  VVK GF  DV  +  L+ +YS  G +  A  VFE    + +V+W  +  G+   G+
Sbjct: 133 LHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGK 192

Query: 194 MGKAREVFD---EMPQKDAISWSIMIDGYRKKKGDISSARILFEHMP----IKDLISWNS 246
             +A ++F    EM  +    + + +       GD+ S   + +HM      K+     +
Sbjct: 193 HREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTT 252

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           +++ YAK G +  A+ +F+ M E+++ +WS MI GYA +  PKE +  F +ML + ++PD
Sbjct: 253 LVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPD 312

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
             S++G +S+CA +GALDLG+W    + R     ++ +  ALIDMY KCG++     +F 
Sbjct: 313 QFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFK 372

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            M +K+++  N  I+GL  NG  + +   F Q E  GI  D   FLG+L  C H+GL  +
Sbjct: 373 EMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQD 432

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G R F ++     ++  +EHY C+VDL  RAG L+ A  ++  MPM+PN  +WG LL  C
Sbjct: 433 GLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGC 492

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           R  ++  LAE V++ L+ L+  + G YV LSNIY+ +G W+ A  +R MM ++ +KK  G
Sbjct: 493 RLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPG 552

Query: 547 RSVIEIDGNIKEFVSGEIFDVQSEEL---------ELVIQSFVKTT 583
            S IE++G + EF++ +     S+++         E+ +  FV TT
Sbjct: 553 YSWIELEGTVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTT 598


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 188/527 (35%), Positives = 290/527 (55%), Gaps = 29/527 (5%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           +A+ +F      +    N+MI G+ Q  + + A   +  M+ + L  DN T+  VL  C 
Sbjct: 484 EAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCK 543

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
               L  G +IHG + + G   DV + N LI MY +CG +  AR+VF   + +D++SW  
Sbjct: 544 NPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTA 603

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS--------------- 228
           ++ G  + GE  KA E+F          W +  +G+R  K   SS               
Sbjct: 604 MIGGCADQGEDMKAIELF----------WQMQNEGFRPVKSTFSSILKVCTSSACLDEGK 653

Query: 229 ---ARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
              A IL     + D    N++I  Y+K G +  A+++F++MP R++ SW+ +I GYAQ+
Sbjct: 654 KVIAYILNSGYEL-DTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQN 712

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
           G  + A+    +M  Q V P+  S +  ++AC+   AL+ GK +H  + + ++  D+ V 
Sbjct: 713 GLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVG 772

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
            ALI MY KCGS  EA+ +F ++ +KNV+++N MI     +G   +AL  F  ME EGI 
Sbjct: 773 AALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIK 832

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
            D   F  +L AC+H+GL  EGY+IF SM+   G+ P +EHY CLV LL RA   ++A  
Sbjct: 833 PDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAET 892

Query: 466 IVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM 525
           ++  MP  P+ A+W TLL ACR H N+ LAE      ++L A +  +Y+LLSN+YA AG 
Sbjct: 893 LINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGR 952

Query: 526 WEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           W+   +IR++M  R I+KE GRS IE+D  I EF++ +    ++ E+
Sbjct: 953 WDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEI 999



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 139/526 (26%), Positives = 242/526 (46%), Gaps = 78/526 (14%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D A++ F      +  ++N +I    Q  +  +A   Y  M+  G+ ++  TY  +L 
Sbjct: 279 DVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILN 338

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC     L  G  IH  + + G   DV + N LI MY++C                    
Sbjct: 339 ACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARC-------------------- 378

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY--RKKKGD------------I 226
                      G++ KARE+F  MP++D ISW+ +I GY  R+ +G+            +
Sbjct: 379 -----------GDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGV 427

Query: 227 SSARILFEH---------------MPIKDLIS---------WNSMIDGYAKIGDLVAAQQ 262
              R+ F H               M  +D++           N++++ Y + G L+ AQ 
Sbjct: 428 KPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQN 487

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F     R+V SW+ MI G+AQHG+ + A  LF+EM  + + PD I+    +S C    A
Sbjct: 488 VFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEA 547

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
           L+LGK IH  +  S + +D+ +  ALI+MY++CGSL +AR +F+S+  ++V+S+  MI G
Sbjct: 548 LELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGG 607

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
               G   +A++ F QM+ EG       F  +L  C+ S    EG ++   +  + G E 
Sbjct: 608 CADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYI-LNSGYEL 666

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
                + L+   S++G +  A  + + MP + ++  W  ++     +    L +  VE  
Sbjct: 667 DTGVGNALISAYSKSGSMTDAREVFDKMPSR-DIVSWNKIIAG---YAQNGLGQTAVEFA 722

Query: 503 VELKADDC----GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
            +++  D       +V L N  +     E   R+   + KRK++ +
Sbjct: 723 YQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGD 768



 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 131/480 (27%), Positives = 241/480 (50%), Gaps = 12/480 (2%)

Query: 47  LSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK 106
           LS LL+++       +D A ++F ++ + +    N++I  Y Q    +KA   +  M+  
Sbjct: 64  LSNLLINMYVKCRSVLD-AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNA 122

Query: 107 GLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCA 166
           G + +  TY  +L AC     L  G +IH +++K G+  D  V N L+ MY KCG +  A
Sbjct: 123 GFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRA 182

Query: 167 RSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKK 222
           R VF G   +D+VS+N +L  + +   + +   +F +M  +    D +++  ++D +   
Sbjct: 183 RQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTP 242

Query: 223 KGDISSARI---LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMI 279
                  RI     E     D+    +++    + GD+ +A+Q F    +R+V  ++ +I
Sbjct: 243 SMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALI 302

Query: 280 DGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRIT 339
              AQHG+  EA   +  M   GV  +  + +  ++AC+   AL+ GK IH  +     +
Sbjct: 303 AALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHS 362

Query: 340 MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
            D+ +  ALI MY +CG L +AR +FY+M K+++IS+N +IAG        EA++ + QM
Sbjct: 363 SDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQM 422

Query: 400 ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
           ++EG+    + FL +L AC++S    +G  I + + R  GI+      + L+++  R G 
Sbjct: 423 QSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILR-SGIKSNGHLANALMNMYRRCGS 481

Query: 460 LEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLV--ELKADDCGLYVLLS 517
           L +A N+ E    + ++  W +++     H +   A  + + +   EL+ D+     +LS
Sbjct: 482 LMEAQNVFEGTQAR-DVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLS 540



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 124/435 (28%), Positives = 226/435 (51%), Gaps = 13/435 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++ +A ++F  I   +   +NTM+  Y Q +  ++ L  +  M  +G+  D  TY  +L 
Sbjct: 178 DLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLD 237

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           A      L EG  IH   V+ G   D+ V   L+ M  +CG +  A+  F+G+  +D+V 
Sbjct: 238 AFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVV 297

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAI-----SWSIMIDGYRKKKGDISSARILFEH 235
           +N ++    + G   +A E +  M + D +     ++  +++     K  + + +++  H
Sbjct: 298 YNALIAALAQHGHNVEAFEQYYRM-RSDGVALNRTTYLSILNACSTSKA-LEAGKLIHSH 355

Query: 236 MP----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           +       D+   N++I  YA+ GDL  A++LF  MP+R++ SW+ +I GYA+  +  EA
Sbjct: 356 ISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEA 415

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           + L+++M  +GV+P  ++ +  +SACA   A   GK IH  + RS I  +  +  AL++M
Sbjct: 416 MRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNM 475

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y +CGSL EA+ +F     ++VIS+N MIAG   +G  E A K F +M+ E +  D++ F
Sbjct: 476 YRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITF 535

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
             VL  C +      G +I   +    G++  +   + L+++  R G L+ A N+  S+ 
Sbjct: 536 ASVLSGCKNPEALELGKQIHGRITE-SGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQ 594

Query: 472 MKPNLALWGTLLLAC 486
            + ++  W  ++  C
Sbjct: 595 HR-DVMSWTAMIGGC 608



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/378 (29%), Positives = 194/378 (51%), Gaps = 11/378 (2%)

Query: 114 TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS 173
           TY  +L+ C     L E   IH ++V+     D+F+ N LI MY KC  +  A  VF+  
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ----KDAISW-SIMIDGYRK---KKGD 225
             +D++SWN ++  + + G   KA ++F+EM       + I++ SI+   Y     + G 
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGK 148

Query: 226 ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
              ++I+      +D    NS++  Y K GDL  A+Q+F  +  R+V S++ M+  YAQ 
Sbjct: 149 KIHSQIIKAGYQ-RDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQK 207

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
              KE L LF +M  +G+ PD ++ +  + A      LD GK IH       +  D+ V 
Sbjct: 208 AYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVG 267

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
           TAL+ M ++CG +D A++ F     ++V+ YN +IA L  +G   EA + + +M ++G+ 
Sbjct: 268 TALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVA 327

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
            +   +L +L ACS S  A E  ++  S     G    ++  + L+ + +R G+L +A  
Sbjct: 328 LNRTTYLSILNACSTSK-ALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARE 386

Query: 466 IVESMPMKPNLALWGTLL 483
           +  +MP K +L  W  ++
Sbjct: 387 LFYTMP-KRDLISWNAII 403



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 132/250 (52%), Gaps = 2/250 (0%)

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           D+   N +I+ Y K   ++ A Q+F EMP R+V SW+ +I  YAQ G  K+A  LF EM 
Sbjct: 61  DIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQ 120

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
             G  P+ I+ +  ++AC     L+ GK IH  + ++    D  VQ +L+ MY KCG L 
Sbjct: 121 NAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLP 180

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
            AR++F  ++ ++V+SYN M+       + +E L  F QM +EGI  D + ++ +L A +
Sbjct: 181 RARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFT 240

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
              +  EG RI + +    G+   +   + LV +  R G+++ A    +    + ++ ++
Sbjct: 241 TPSMLDEGKRIHK-LTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADR-DVVVY 298

Query: 480 GTLLLACRNH 489
             L+ A   H
Sbjct: 299 NALIAALAQH 308



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 128/268 (47%), Gaps = 7/268 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  A  +F+ +   +      MI G        KA+  +  M+ +G      T+  +LK
Sbjct: 582 SLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILK 641

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C     L EG ++   ++  G+  D  V N LI  YSK G M  AR VF+    +D+VS
Sbjct: 642 VCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVS 701

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAI----SWSIMIDGYRKKKGDISSARILFEHM 236
           WN ++ G+ + G    A E   +M ++D +    S+  +++            R+  E +
Sbjct: 702 WNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIV 761

Query: 237 PIK---DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
             K   D+    ++I  YAK G    AQ++F+ + E+NV +W+ MI+ YAQHG   +AL 
Sbjct: 762 KRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALG 821

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVG 321
            F  M  +G++PD  +    +SAC   G
Sbjct: 822 FFNCMEKEGIKPDGSTFTSILSACNHAG 849



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 131/303 (43%), Gaps = 19/303 (6%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +M  A  +F+++   +    N +I GY Q+   Q A+ F   M+ + ++ + +++  +L 
Sbjct: 683 SMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLN 742

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC     L EG  +H E+VK     DV V   LI MY+KCG  G A+ VF+    K++V+
Sbjct: 743 ACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVT 802

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHM 236
           WN ++  + + G   KA   F+ M ++    D  +++ ++       G +     +F  M
Sbjct: 803 WNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSAC-NHAGLVLEGYQIFSSM 861

Query: 237 P-----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKE 290
                 +  +  +  ++    +      A+ L N+MP   +   W  ++     HGN   
Sbjct: 862 ESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIAL 921

Query: 291 ALYLFREMLCQGVR--------PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
           A +     L    R         +V +  G     A++  +  G+ I     RS I +D 
Sbjct: 922 AEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDN 981

Query: 343 IVQ 345
           I+ 
Sbjct: 982 IIH 984


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 187/556 (33%), Positives = 309/556 (55%), Gaps = 42/556 (7%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D   ++F+++ + N     ++I GY+  +  ++A+  +  M   G+  +  T    + A
Sbjct: 173 VDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISA 232

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G ++   + ++G   +  VVN L+ MY KCG M   R +F+    K+LV +
Sbjct: 233 CAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMY 292

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK---------------------------------- 207
           N ++  +V+ G  G+   V DEM QK                                  
Sbjct: 293 NTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFR 352

Query: 208 ------DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQ 261
                 D IS +I ID Y K  G   +A  +F+ M  K +++WNS+I G  + G+L  A 
Sbjct: 353 NGLERLDNISNAI-IDMYMKC-GKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELAL 410

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
           ++F EMPE N+ SW+ MI    Q    +EA+ L REM  QG++ D ++++G  SAC  +G
Sbjct: 411 RIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLG 470

Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
           ALDL KWI+ +++++ I +DM + TAL+DM+ +CG    A R+F +M K++V ++   I 
Sbjct: 471 ALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIR 530

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
              + G  + A++ F +M  + +  DD +F+ +L A SH G   +G ++F +M++  G+ 
Sbjct: 531 VKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVS 590

Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEG 501
           P++ HY C+VDLL RAG LE+A ++++SMP+KPN  +WG+ L ACR H+NV  A    E 
Sbjct: 591 PQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEK 650

Query: 502 LVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
           + +L  +  G++VLLSNIYA AG W    R+R  M+++  +K  G S IE+ G I+EF S
Sbjct: 651 ITQLAPEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTS 710

Query: 562 GEIFDVQSEELELVIQ 577
           G+    ++ ++ L++Q
Sbjct: 711 GDESHTENAQIGLMLQ 726



 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 166/570 (29%), Positives = 284/570 (49%), Gaps = 68/570 (11%)

Query: 10  SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL-NMDQAERL 68
           + + P  S LQ  KT       L QL  N L    F +++L+ +     T  +++ A   
Sbjct: 20  TTQKPKNSSLQTCKTLIE----LKQLHCNMLKKGVFNINKLIAACVQMGTHESLNYALNA 75

Query: 69  F--NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMK-RKGLLVDNYTYPFVLKACGVL 125
           F  ++  + + Y  NT+IRGY  S   ++A+  Y++M    G++ DN+T+PF+L AC  +
Sbjct: 76  FKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKI 135

Query: 126 MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL 185
           M   EG ++HG VVKMG + D+FV N LI  Y+ CG +   R VF+    +++VSW  ++
Sbjct: 136 MAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLI 195

Query: 186 RGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARI--LFEHMPIK 239
            G+       +A  +F EM     + + ++    I    K K      ++  L   + +K
Sbjct: 196 NGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVK 255

Query: 240 -DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
            + +  N+++D Y K GD+ A +++F+E  ++N+  ++ ++  Y QHG   E L +  EM
Sbjct: 256 SNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEM 315

Query: 299 LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
           L +G RPD ++++  I+ACAQ+G L +GK  H ++ R+ +     +  A+IDMYMKCG  
Sbjct: 316 LQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKR 375

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNG--------FG--------------------- 389
           + A ++F SM+ K V+++N +IAGL  +G        FG                     
Sbjct: 376 EAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQAS 435

Query: 390 --EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
             EEA+    +M+ +GI  D +  +G+  AC + G       I+  ++++  I   ++  
Sbjct: 436 MFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKN-DIHIDMQLG 494

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL-- 505
           + LVD+ SR G+   A+ + E+M  K +++ W   +        V   E   +G +EL  
Sbjct: 495 TALVDMFSRCGDPLNAMRVFENME-KRDVSAWTAAI-------RVKAVEGNAKGAIELFD 546

Query: 506 -------KADDCGLYVLLSNI----YADAG 524
                  KADD     LL+      Y D G
Sbjct: 547 EMLKQDVKADDFVFVALLTAFSHGGYVDQG 576



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 119/435 (27%), Positives = 213/435 (48%), Gaps = 32/435 (7%)

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF---------EGSEIKDL 178
           L+E  ++H  ++K G    VF +N LI   + C  MG   S+          EG++   L
Sbjct: 35  LIELKQLHCNMLKKG----VFNINKLI---AACVQMGTHESLNYALNAFKEDEGTKCS-L 86

Query: 179 VSWNLVLRGFVECGEMGKAREVFDEMP-----QKDAISWSIMIDGYRKKKG---DISSAR 230
            + N ++RG+   G   +A  ++  M        D  ++  ++    K       +    
Sbjct: 87  YTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHG 146

Query: 231 ILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
           ++ +   +KDL   NS+I  YA  G +   +++F+EM ERNV SW+ +I+GY+     KE
Sbjct: 147 VVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKE 206

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
           A+ LF EM+  GV P+ ++++ AISACA++  L+LGK +   M    +  + +V  AL+D
Sbjct: 207 AVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLD 266

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           MYMKCG +   R IF   + KN++ YN +++    +G   E L    +M  +G   D + 
Sbjct: 267 MYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVT 326

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS-CLVDLLSRAGELEQALNIVES 469
            L  + AC+  G  + G      + R+ G+E +L++ S  ++D+  + G+ E A  + +S
Sbjct: 327 MLSTIAACAQLGDLSVGKSSHAYVFRN-GLE-RLDNISNAIIDMYMKCGKREAACKVFDS 384

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           M  K  +  W +L+        + LA  +     E+   +   +  +      A M+E A
Sbjct: 385 MSNK-TVVTWNSLIAGLVRDGELELALRI---FGEMPESNLVSWNTMIGAMVQASMFEEA 440

Query: 530 LRIRKMMRKRKIKKE 544
           + + + M+ + IK +
Sbjct: 441 IDLLREMQNQGIKGD 455


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 164/363 (45%), Positives = 246/363 (67%), Gaps = 1/363 (0%)

Query: 215 MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
           ++D Y  + GD+ SA+ LF+ MP K L+S  +M+  YAK G+L AA+ LF+ M ER+   
Sbjct: 165 LLDVY-ARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVC 223

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W++MIDGY Q+G P EAL LFR ML    +P+ ++V+  +SAC Q+GAL+ G+W+H +++
Sbjct: 224 WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIE 283

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
            + I  ++ V TAL+DMY KCGSL++AR +F  +  K+V+++N MI G  M+GF +EAL+
Sbjct: 284 NNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQ 343

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
            F  M   G+   ++ F+G+L AC HSG  TEG+ IF  MK   GIEPK+EHY C+V+LL
Sbjct: 344 LFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLL 403

Query: 455 SRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYV 514
            RAG +EQA  +V++M ++P+  LWGTLL ACR H  + L E +VE LV+    + G Y+
Sbjct: 404 GRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYI 463

Query: 515 LLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELEL 574
           LLSNIYA  G W+   R+R MM+   +KKE G S IE++  + EF++G +   + +E+ +
Sbjct: 464 LLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYM 523

Query: 575 VIQ 577
           +++
Sbjct: 524 MLE 526



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 129/463 (27%), Positives = 213/463 (46%), Gaps = 79/463 (17%)

Query: 9   FSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERL 68
           F   N L  L+  SKT +H+LQI A L  + L   P    +L  S  S   L  D +  L
Sbjct: 27  FISTNRLAVLIDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRL--DYSVAL 84

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           F +   P+ +    +I G+      ++AL+FY  M  +G+  + +T+  +LK C +    
Sbjct: 85  FGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPI---- 140

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
             G  +H + VK+GF  D++V  GL+ +Y++ G +  A+ +F+    K LVS   +L  +
Sbjct: 141 EPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCY 200

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM----------PI 238
            + GE+  AR +FD M ++D + W++MIDGY  + G  + A +LF  M           +
Sbjct: 201 AKHGELDAARVLFDGMEERDGVCWNVMIDGY-TQNGMPNEALVLFRRMLKAKAKPNEVTV 259

Query: 239 KDLIS------------W-----------------NSMIDGYAKIGDLVAAQQLFNEMPE 269
             ++S            W                  +++D Y+K G L  A+ +F+++ +
Sbjct: 260 LSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDD 319

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329
           ++V +W+ MI GYA HG  +EAL LF+ M   G+ P  I+ +G +SAC   G      W+
Sbjct: 320 KDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSG------WV 373

Query: 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFG 389
                           T   D++ K    DE     Y +  K +  Y  M+  LG  G  
Sbjct: 374 ----------------TEGWDIFNKMK--DE-----YGIEPK-IEHYGCMVNLLGRAGHV 409

Query: 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
           E+A +    M  E    D +++  +L AC   G    G +I +
Sbjct: 410 EQAYELVKNMNIE---PDPVLWGTLLGACRLHGKIALGEKIVE 449



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 103/237 (43%), Gaps = 13/237 (5%)

Query: 329 IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
           IH  + R  +    I+   L   Y   G LD +  +F      +V  +  +I G  + G 
Sbjct: 49  IHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGL 108

Query: 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
            E+AL  +AQM T+G+  +   F  +L  C       E  +   S     G +  L   +
Sbjct: 109 HEQALNFYAQMLTQGVEPNAFTFSSILKLC-----PIEPGKALHSQAVKLGFDSDLYVRT 163

Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC-RNHQNVTLAEVVVEGLVELKA 507
            L+D+ +R G++  A  + ++MP K  ++L  T +L C   H  +  A V+ +G+ E   
Sbjct: 164 GLLDVYARGGDVVSAQQLFDTMPEKSLVSL--TAMLTCYAKHGELDAARVLFDGMEE--- 218

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE--TGRSVIEIDGNIKEFVSG 562
            D   + ++ + Y   GM   AL + + M K K K    T  SV+   G +    SG
Sbjct: 219 RDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG 275


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 167/390 (42%), Positives = 256/390 (65%), Gaps = 1/390 (0%)

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM 247
           + + G +  AR+ FDE P +D    ++M+  Y   + +++ AR +F+ MP++DL+SWN+M
Sbjct: 2   YAKAGRVDLARDAFDEAPLRDVFLCNVMLAAY-VSRSEVAEARKVFDGMPMRDLVSWNTM 60

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           I GYA  G++  A+++F+   +R+ FSWS MI  YA+    KEAL L+REM    + PD 
Sbjct: 61  IHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDC 120

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           I+++  +SAC+ +GAL +G  +H F++ +RI +D+ + TALIDMY KCG ++ A+R+F  
Sbjct: 121 ITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDR 180

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           M +K+V +++ MI GL  +G G E+L  F++M +EG+  + + F+GVLIAC+H GL +EG
Sbjct: 181 MPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEG 240

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
            + F+SM    GIEP +EHY C+VDLL R+G +E+A  ++ SM  +P+  +W  LL ACR
Sbjct: 241 KKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACR 300

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
            H+NV +AE  +  L  L     G YVLLSNIYA A  WE    +RK +R+  I++  GR
Sbjct: 301 IHKNVEIAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGR 360

Query: 548 SVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           S IE D  I EFVSG+    +S+E+  V++
Sbjct: 361 SSIEWDEKIHEFVSGDRLHPRSKEIYRVLE 390



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 139/265 (52%), Gaps = 39/265 (14%)

Query: 144 LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDE 203
           L DVF+ N ++  Y     +  AR VF+G  ++DLVSWN ++ G+   GE+G ARE+FD 
Sbjct: 20  LRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDG 79

Query: 204 MPQKDAISWSIMIDGYRKKK---------GDISSARILFEHMPIKDLISW---------- 244
              +DA SWS MI  Y K +          ++ +A I+ + + +  ++S           
Sbjct: 80  TEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVG 139

Query: 245 -------------------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
                               ++ID YAK GD+ +AQ++F+ MPE++V +WS MI G A H
Sbjct: 140 AEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANH 199

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIV 344
           G   E+L LF +M+ +G++P+ ++ +G + AC  VG +  G K+     +   I   +  
Sbjct: 200 GLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEH 259

Query: 345 QTALIDMYMKCGSLDEARRIFYSMT 369
              ++D+  + G ++EAR++  SMT
Sbjct: 260 YGCMVDLLGRSGHVEEARQLIRSMT 284



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 102/267 (38%), Gaps = 54/267 (20%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A  +F+     + +  ++MI  Y +S   ++AL  +  M    ++ D  T   V+ AC  
Sbjct: 73  AREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSD 132

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L  L  G E+H  V       D+ +   LI MY+KCG +  A+ VF              
Sbjct: 133 LGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVF-------------- 178

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
                            D MP+KD  +WS MI G     G    +  LF  M     IS 
Sbjct: 179 -----------------DRMPEKDVQTWSSMIIGL-ANHGLGHESLSLFSKM-----ISE 215

Query: 245 NSMIDGYAKIGDLVA---------AQQLFNEMP-----ERNVFSWSIMIDGYAQHGNPKE 290
               +G   +G L+A          ++ F  M      E  V  +  M+D   + G+ +E
Sbjct: 216 GMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEE 275

Query: 291 ALYLFREMLCQGVRPDVISVMGAISAC 317
           A  L R M  +   PD I     + AC
Sbjct: 276 ARQLIRSMTFE---PDTIIWRALLGAC 299


>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
 gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
 gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 570

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 184/531 (34%), Positives = 288/531 (54%), Gaps = 43/531 (8%)

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           P+  M+N M++      +  K L+ +  ++ +GL  DN+T P VLK+ G L  ++EG ++
Sbjct: 9   PSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKV 68

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           HG  VK G   D +V N L+GMY+  G +     VF+    +D+VSWN ++  +V  G  
Sbjct: 69  HGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRF 128

Query: 195 GKAREVFDEMPQKDAISW---------------------------------------SIM 215
             A  VF  M Q+  + +                                       + +
Sbjct: 129 EDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIGNAL 188

Query: 216 IDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
           +D +  K G +  AR +F+ M  K++  W SM+ GY   G +  A+ LF   P ++V  W
Sbjct: 189 VDMF-CKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLW 247

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
           + M++GY Q     EAL LFR M   G+RPD   ++  ++ CAQ GAL+ GKWIH ++  
Sbjct: 248 TAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINE 307

Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
           +R+T+D +V TAL+DMY KCG ++ A  +FY + +++  S+  +I GL MNG    AL  
Sbjct: 308 NRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDL 367

Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           + +ME  G+  D + F+ VL AC+H G   EG +IF SM     ++PK EH SCL+DLL 
Sbjct: 368 YYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLC 427

Query: 456 RAGELEQALNIVESMPMKPN---LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
           RAG L++A  +++ M  + +   + ++ +LL A RN+ NV +AE V E L +++  D   
Sbjct: 428 RAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSA 487

Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           + LL+++YA A  WE    +R+ M+   I+K  G S IEIDG   EF+ G+
Sbjct: 488 HTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVGHEFIVGD 538



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 107/441 (24%), Positives = 184/441 (41%), Gaps = 74/441 (16%)

Query: 1   MKTLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTS---- 56
           M  L      + N ++  L   K+ T +L +  +L    L  + FTL  +L S+      
Sbjct: 3   MSLLQTPSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKV 62

Query: 57  ---------------------PNTL--------NMDQAERLFNQIYQPNTYMHNTMIRGY 87
                                 N+L         ++   ++F+++ Q +    N +I  Y
Sbjct: 63  IEGEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSY 122

Query: 88  TQSSNPQKALSFYVNMKRKG-LLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCD 146
             +   + A+  +  M ++  L  D  T    L AC  L  L  G  I+  VV   F   
Sbjct: 123 VGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTE-FEMS 181

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
           V + N L+ M+ KCG +  AR+VF+    K++  W  ++ G+V  G + +AR +F+  P 
Sbjct: 182 VRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPV 241

Query: 207 KDAISWSIMIDGYRK----------------------------------KKGDISSARIL 232
           KD + W+ M++GY +                                  + G +   + +
Sbjct: 242 KDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWI 301

Query: 233 F----EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNP 288
                E+    D +   +++D YAK G +  A ++F E+ ER+  SW+ +I G A +G  
Sbjct: 302 HGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMS 361

Query: 289 KEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI-HVFMKRSRITMDMIVQTA 347
             AL L+ EM   GVR D I+ +  ++AC   G +  G+ I H   +R  +       + 
Sbjct: 362 GRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSC 421

Query: 348 LIDMYMKCGSLDEARRIFYSM 368
           LID+  + G LDEA  +   M
Sbjct: 422 LIDLLCRAGLLDEAEELIDKM 442



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 111/247 (44%), Gaps = 14/247 (5%)

Query: 58  NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF 117
           +T  +D+A  LF +    +  +   M+ GY Q +   +AL  +  M+  G+  DN+    
Sbjct: 225 STGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVS 284

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           +L  C     L +G  IHG + +     D  V   L+ MY+KCG +  A  VF   + +D
Sbjct: 285 LLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERD 344

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILF 233
             SW  ++ G    G  G+A +++ EM     + DAI++  ++       G ++  R +F
Sbjct: 345 TASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTAC-NHGGFVAEGRKIF 403

Query: 234 EHMPIKDLISWNS-----MIDGYAKIGDLVAAQQLFNEM----PERNVFSWSIMIDGYAQ 284
             M  +  +   S     +ID   + G L  A++L ++M     E  V  +  ++     
Sbjct: 404 HSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARN 463

Query: 285 HGNPKEA 291
           +GN K A
Sbjct: 464 YGNVKIA 470


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 164/363 (45%), Positives = 245/363 (67%), Gaps = 1/363 (0%)

Query: 215 MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
           ++D Y  + GD+ SA+ LF+ MP K L+S  +M+  YAK G+L AA+ LF+ M ER+   
Sbjct: 112 LLDVY-ARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVC 170

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W++MIDGY Q+G P EAL LFR ML    +P+ ++V+  +SAC Q+GAL+ G+W+H +++
Sbjct: 171 WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIE 230

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
            + I  ++ V TAL+DMY KCGSL++AR +F  +  K+V+++N MI G  M GF +EAL+
Sbjct: 231 NNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQ 290

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
            F  M   G+   ++ F+G+L AC HSG  TEG+ IF  MK   GIEPK+EHY C+V+LL
Sbjct: 291 LFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLL 350

Query: 455 SRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYV 514
            RAG +EQA  +V++M ++P+  LWGTLL ACR H  + L E +VE LV+    + G Y+
Sbjct: 351 GRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYI 410

Query: 515 LLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELEL 574
           LLSNIYA  G W+   R+R MM+   +KKE G S IE++  + EF++G +   + +E+ +
Sbjct: 411 LLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYM 470

Query: 575 VIQ 577
           +++
Sbjct: 471 MLE 473



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 109/410 (26%), Positives = 187/410 (45%), Gaps = 77/410 (18%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D +  LF +   P+ +    +I G+      ++AL+FY  M  +G+  + +T+  +LK 
Sbjct: 25  LDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKL 84

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C +      G  +H + VK+GF  D++V  GL+ +Y++ G +  A+ +F+    K LVS 
Sbjct: 85  CPI----EPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSL 140

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM----- 236
             +L  + + GE+  AR +FD M ++D + W++MIDGY  + G  + A +LF  M     
Sbjct: 141 TAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGY-TQNGMPNEALVLFRRMLKAKA 199

Query: 237 -----PIKDLIS------------W-----------------NSMIDGYAKIGDLVAAQQ 262
                 +  ++S            W                  +++D Y+K G L  A+ 
Sbjct: 200 KPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARL 259

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F+++ +++V +W+ MI GYA  G  +EAL LF+ M   G+ P  I+ +G +SAC   G 
Sbjct: 260 VFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGW 319

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
           +  G  I   MK                        DE     Y +  K +  Y  M+  
Sbjct: 320 VTEGWDIFNKMK------------------------DE-----YGIEPK-IEHYGCMVNL 349

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
           LG  G  E+A +    M  E    D +++  +L AC   G    G +I +
Sbjct: 350 LGRAGHVEQAYELVKNMNIE---PDPVLWGTLLGACRLHGKIALGEKIVE 396



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 119/266 (44%), Gaps = 37/266 (13%)

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           YA +G L  +  LF      +VF W+ +I G+A  G  ++AL  + +ML QGV P+  + 
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM------------------- 351
              +  C     ++ GK +H    +     D+ V+T L+D+                   
Sbjct: 79  SSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 134

Query: 352 ------------YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
                       Y K G LD AR +F  M +++ + +NVMI G   NG   EAL  F +M
Sbjct: 135 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 194

Query: 400 ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
                  +++  L VL AC   G A E  R   S   + GI+  +   + LVD+ S+ G 
Sbjct: 195 LKAKAKPNEVTVLSVLSACGQLG-ALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGS 253

Query: 460 LEQALNIVESMPMKPNLALWGTLLLA 485
           LE A  + + +  K ++  W ++++ 
Sbjct: 254 LEDARLVFDKIDDK-DVVAWNSMIVG 278



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A  +F++I   +    N+MI GY      Q+AL  + +M R GL   N T+  +L 
Sbjct: 253 SLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILS 312

Query: 121 ACGVLMGLVEGTEIHGEVV-KMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK-DL 178
           ACG    + EG +I  ++  + G    +     ++ +  + GH+  A  + +   I+ D 
Sbjct: 313 ACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDP 372

Query: 179 VSWNLVL 185
           V W  +L
Sbjct: 373 VLWGTLL 379


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 188/520 (36%), Positives = 297/520 (57%), Gaps = 8/520 (1%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  A R+F+ I   N      MI  +   +   +A   Y  MK  G   D  T+  +L 
Sbjct: 97  SLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLN 156

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           A      L  G ++H E+V+ G   +  V   L+GMY+KCG +  AR +F+    K++V+
Sbjct: 157 AFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVT 216

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDA----ISWSIMIDGYRKKKG---DISSARILF 233
           W L++ G+ + G++  A E+ + M Q +     I+++ ++ G              R + 
Sbjct: 217 WTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYII 276

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
           +    ++L   NS+I  Y K G L  A++LF+++P R+V +W+ M+ GYAQ G   EA+ 
Sbjct: 277 QSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAIN 336

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           LFR M  QG++PD ++    +++C+    L  GK IH  +  +   +D+ +Q+AL+ MY 
Sbjct: 337 LFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYA 396

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGL-GMNGFGEEALKCFAQMETEGIPKDDLIFL 412
           KCGS+D+A  +F  M+++NV+++  +I G    +G   EAL+ F QM+ +GI  D + F 
Sbjct: 397 KCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFT 456

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            VL AC+H GL  EG + F+SM    GI+P +EHYSC VDLL RAG LE+A N++ SMP 
Sbjct: 457 SVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPF 516

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
            P  ++WG LL ACR H +V   E   E +++L  DD G YV LS+IYA AG +E A ++
Sbjct: 517 IPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKV 576

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           R++M KR + KE G+S IE+DG +  F   +    +SE++
Sbjct: 577 RQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQI 616



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 208/401 (51%), Gaps = 11/401 (2%)

Query: 94  QKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGL 153
           ++AL     M  +G  V +  +  +L+ C  L  L +G E+H  ++K G   + ++ N L
Sbjct: 29  KEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTL 88

Query: 154 IGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDA 209
           + MY+KCG +  AR VF+    +++VSW  ++  FV   +  +A + ++ M     + D 
Sbjct: 89  LSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDK 148

Query: 210 ISWSIMIDGYRKKK----GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
           +++  +++ +   +    G      I+   + ++  +   S++  YAK GD+  A+ +F+
Sbjct: 149 VTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG-TSLVGMYAKCGDISKARVIFD 207

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
            +PE+NV +W+++I GYAQ G    AL L   M    V P+ I+    +  C    AL+ 
Sbjct: 208 RLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEH 267

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
           GK +H ++ +S    ++ V  +LI MY KCG L+EAR++F  +  ++V+++  M+ G   
Sbjct: 268 GKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQ 327

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
            GF +EA+  F +M+ +GI  D + F  VL +CS      EG RI Q +  H G    + 
Sbjct: 328 LGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLV-HAGYNLDVY 386

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
             S LV + ++ G ++ A  +   M  + N+  W  ++  C
Sbjct: 387 LQSALVSMYAKCGSMDDASLVFNQMSER-NVVAWTAIITGC 426



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 106/200 (53%), Gaps = 3/200 (1%)

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
           G  KEAL +   M+ QG R       G +  CA++ +L+ G+ +H  + +S I  +  ++
Sbjct: 26  GRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLE 85

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
             L+ MY KCGSL +ARR+F S+  +N++S+  MI          EA KC+  M+  G  
Sbjct: 86  NTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCK 145

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
            D + F+ +L A ++  L   G ++   +    G+E +    + LV + ++ G++ +A  
Sbjct: 146 PDKVTFVSLLNAFTNPELLQLGQKVHMEIVE-AGLELEPRVGTSLVGMYAKCGDISKARV 204

Query: 466 IVESMPMKPNLALWGTLLLA 485
           I + +P K N+  W TLL+A
Sbjct: 205 IFDRLPEK-NVVTW-TLLIA 222


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 194/581 (33%), Positives = 305/581 (52%), Gaps = 84/581 (14%)

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           N  + N+++R        ++AL  Y  M++ G+  D +T+P V++AC ++        +H
Sbjct: 99  NLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVH 158

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV------ 189
           G VV+MGF  ++ V N L+GMY K G M  AR VFE   ++  VSWN ++ G+       
Sbjct: 159 GHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCH 218

Query: 190 -----------------------------ECGEMGKAREVFDEMPQKD--------AISW 212
                                         CG+  +  E+F  M  +         A+  
Sbjct: 219 GASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVL 278

Query: 213 SIMID-----------GY-------------------RKKKGDISSARILFEHMPIKDLI 242
           S+ +D           GY                     K G++++ARILF  +  K+++
Sbjct: 279 SVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIV 338

Query: 243 SWNSMIDGYAKIGDLVAAQQLF------NEMP--ERNVFSWSIMIDGYAQHGNPKEALYL 294
           SWN++I  YA +G    A  +F      +E P    NV SWS +I G+A  G  +EAL L
Sbjct: 339 SWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALEL 398

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           FR M    V+ + +++   +S CA++ AL LG+ IH  + RS +  +++V   LI+MY K
Sbjct: 399 FRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTK 458

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
            GS  E   +F  +  K++IS+N M+AG G++G GE A++ F QM  +G   D + F+ V
Sbjct: 459 SGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAV 518

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L ACSH+GL  EG  +F  M +   +EP++EHY+C+VDLL RAG L++A  +V+SMP++P
Sbjct: 519 LSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEP 578

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           N  +WG LL +CR H+N  +AE     +  L ++  G Y+LLSNIYA +G WE + ++R 
Sbjct: 579 NACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRI 638

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELV 575
             + + +KK  G+S I++   +  F +G   + Q  ELE V
Sbjct: 639 SAKTKGLKKTPGQSWIQVKKKVYMFSAG---NTQHAELEEV 676



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 149/343 (43%), Gaps = 49/343 (14%)

Query: 74  QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
           +PN     +++  + +     + +  +  M+ +G+         VL     L    EG  
Sbjct: 233 EPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKV 292

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           IHG VVK GF   +FV N LI +Y K G++  AR +F   + K++VSWN ++  + + G 
Sbjct: 293 IHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGW 352

Query: 194 MGKAREVF------DEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK------ 239
             +A  +F      DE P  + + +SWS +I G+   KG    A  LF  M +       
Sbjct: 353 CDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGF-ASKGQGEEALELFRRMQLAKVKANS 411

Query: 240 ---------------------------------DLISWNSMIDGYAKIGDLVAAQQLFNE 266
                                            +++  N +I+ Y K G       +F +
Sbjct: 412 VTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEK 471

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326
           +  +++ SW+ M+ GY  HG  + A+  F +M+  G  PD ++ +  +SAC+  G +  G
Sbjct: 472 IENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEG 531

Query: 327 KWIHVFM-KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           + +   M K  R+   M     ++D+  + G L EA ++  SM
Sbjct: 532 RELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSM 574



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 164/352 (46%), Gaps = 49/352 (13%)

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK---DLVSWNLVLRGFV 189
           +IH +++  G     F+   ++ +Y+  G +  A+ VFE S I+   +L+ WN +LR  V
Sbjct: 52  QIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANV 111

Query: 190 ECGEMGKAREVFDEMPQ----KDAISWSIMID-----GYRK------------------- 221
             G   +A E++  M +     D  ++ ++I      G RK                   
Sbjct: 112 AHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLH 171

Query: 222 ----------KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP--- 268
                     K G +  AR +FE M ++  +SWN+M+ GYA   D   A ++F  M    
Sbjct: 172 VGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAG 231

Query: 269 -ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK 327
            E N+ +W+ ++  +A+ G   E + LF  M  +G+     ++   +S    + A D GK
Sbjct: 232 LEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGK 291

Query: 328 WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
            IH ++ +      + V+ +LI +Y K G+++ AR +F  +  KN++S+N +I+     G
Sbjct: 292 VIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLG 351

Query: 388 FGEEALKCFAQME-TEGIP---KDDLIFLGVLIACSHSGLATEGYRIFQSMK 435
           + +EA   F Q+E T+  P    + + +  V+   +  G   E   +F+ M+
Sbjct: 352 WCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQ 403



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 106/229 (46%), Gaps = 13/229 (5%)

Query: 74  QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
           +PN    + +I G+      ++AL  +  M+   +  ++ T   VL  C  L  L  G E
Sbjct: 373 RPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGRE 432

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           IHG VV+     ++ V NGLI MY+K G       VFE  E KDL+SWN ++ G+   G 
Sbjct: 433 IHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGL 492

Query: 194 MGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKD------LIS 243
              A   FD+M     + D +++  ++       G ++  R LF+ M IK+      +  
Sbjct: 493 GENAIRTFDQMIKDGFEPDGVTFVAVLSAC-SHAGLVAEGRELFDKM-IKEFRVEPQMEH 550

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEA 291
           +  M+D   + G L  A ++   MP E N   W  +++    H N + A
Sbjct: 551 YACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVA 599



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 132/295 (44%), Gaps = 12/295 (4%)

Query: 251 YAKIGDLVAAQQLFNEMPER---NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           YA  G +  AQ++F   P     N+  W+ ++     HG  +EAL ++  M   GV  D 
Sbjct: 76  YAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADG 135

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
            +    I ACA +G+  L + +H  +       ++ V   L+ MY K G +D+AR++F  
Sbjct: 136 FTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFER 195

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           M  ++ +S+N M++G  +N     A + F  M + G+  + + +  +L + +  G   E 
Sbjct: 196 MAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVET 255

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN----LALWGTLL 483
             +F  M R  GI    E  + ++ +       ++   ++    +K      L +  +L+
Sbjct: 256 MELFGRM-RMRGIGATAEALAVVLSVSVDLAAFDEG-KVIHGYVVKGGFENYLFVKNSLI 313

Query: 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
                H NV  A ++    +E+K  +   +  L + YAD G  + A  I   + K
Sbjct: 314 CLYGKHGNVNAARIL---FLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEK 365


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 178/508 (35%), Positives = 293/508 (57%), Gaps = 26/508 (5%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A  +F+ I + N   +N MIR Y  +     AL  + +M   G   D+YTYP VLKAC  
Sbjct: 86  ARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSC 145

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
              L  G ++HG V K+G   ++FV NGLI +Y KCG +  AR V +  + KD+VSWN +
Sbjct: 146 SDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSM 205

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
           + G+ +  +   A ++  EM            DG R+K    + A +L     + +  S 
Sbjct: 206 VAGYAQNMQFDDALDICREM------------DGVRQKPDACTMASLL---PAVTNTSSE 250

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           N           ++  +++F  + ++++ SW++MI  Y ++  P +++ L+ +M    V 
Sbjct: 251 N-----------VLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVE 299

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           PD I+    + AC  + AL LG+ IH +++R ++  +M+++ +LIDMY +CG L++A+R+
Sbjct: 300 PDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRV 359

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F  M  ++V S+  +I+  GM G G  A+  F +M+  G   D + F+ +L ACSHSGL 
Sbjct: 360 FDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLL 419

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            EG   F+ M     I P +EH++CLVDLL R+G +++A NI++ MPMKPN  +WG LL 
Sbjct: 420 NEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLS 479

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           +CR + N+ +  +  + L++L  ++ G YVLLSNIYA AG W     IR +M++R+I+K 
Sbjct: 480 SCRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKM 539

Query: 545 TGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            G S +E++  +  F++G+ +  QS+E+
Sbjct: 540 PGISNVELNNQVHTFLAGDTYHPQSKEI 567



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 146/308 (47%), Gaps = 15/308 (4%)

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           ++  YA  G+   A+ +F+ +PERNV  +++MI  Y  +    +AL +FR+M+  G  PD
Sbjct: 73  LMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPD 132

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
             +    + AC+    L +G  +H  + +  + +++ V   LI +Y KCG L EAR +  
Sbjct: 133 HYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLD 192

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            M  K+V+S+N M+AG   N   ++AL    +M+      D      +L A +++     
Sbjct: 193 EMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENV 252

Query: 427 GY--RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM---PMKPNLALWGT 481
            Y   +F ++++       L  ++ ++ +  +     +++++   M    ++P+     +
Sbjct: 253 LYVEEMFMNLEKK-----SLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCAS 307

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL---LSNIYADAGMWEHALRIRKMMRK 538
           +L AC +   + L   + E +   K   C   +L   L ++YA  G  E A R+   M+ 
Sbjct: 308 VLRACGDLSALLLGRRIHEYVERKKL--CPNMLLENSLIDMYARCGCLEDAKRVFDRMKF 365

Query: 539 RKIKKETG 546
           R +   T 
Sbjct: 366 RDVASWTS 373



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 121/252 (48%), Gaps = 11/252 (4%)

Query: 46  TLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKR 105
           T++ LL ++T+ ++ N+   E +F  + + +    N MI  Y ++S P K++  Y+ M +
Sbjct: 236 TMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGK 295

Query: 106 KGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGC 165
             +  D  T   VL+ACG L  L+ G  IH  V +     ++ + N LI MY++CG +  
Sbjct: 296 CEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLED 355

Query: 166 ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRK 221
           A+ VF+  + +D+ SW  ++  +   G+   A  +F EM       D+I++  ++     
Sbjct: 356 AKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSAC-S 414

Query: 222 KKGDISSARILFEHM----PIKDLIS-WNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSW 275
             G ++  +  F+ M     I  +I  +  ++D   + G +  A  +  +MP + N   W
Sbjct: 415 HSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVW 474

Query: 276 SIMIDGYAQHGN 287
             ++     + N
Sbjct: 475 GALLSSCRVYSN 486


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 190/577 (32%), Positives = 304/577 (52%), Gaps = 70/577 (12%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGY-------------------------------TQS 90
           +D A RLF+QI +P  +  N+M+ GY                               +QS
Sbjct: 179 VDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQS 238

Query: 91  SNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVV 150
              ++AL   V M RKG+ +D+ TY   L AC  L  L  G ++H +V++     D +V 
Sbjct: 239 GRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA 298

Query: 151 NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK--- 207
           + LI +Y+KCG    A+ VF   + ++ VSW +++ G ++     K+ E+F++M  +   
Sbjct: 299 SALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMA 358

Query: 208 -DAISWSIMIDG----------------------------------YRKKKGDISSARIL 232
            D  + + +I G                                     K GD+ +A  +
Sbjct: 359 IDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFV 418

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
           F  M  +D++SW SMI  Y++IG+++ A++ F+ M  RN  +W+ M+  Y QHG  ++ L
Sbjct: 419 FSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGL 478

Query: 293 YLFREMLCQ-GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
            ++  ML Q  V PD ++ +     CA +GA  LG  I     ++ + +++ V  A I M
Sbjct: 479 KMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITM 538

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y KCG + EA+++F  +  K+V+S+N MI G   +G G++A K F  M ++G   D + +
Sbjct: 539 YSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISY 598

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           + VL  CSHSGL  EG   F  M R  GI P LEH+SC+VDLL RAG L +A ++++ MP
Sbjct: 599 VAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMP 658

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           MKP   +WG LL AC+ H N  LAE+  + + EL + D G Y+LL+ IY+DAG  + + +
Sbjct: 659 MKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQ 718

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQ 568
           +RK+MR + IKK  G S +E++  +  F + ++   Q
Sbjct: 719 VRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQ 755



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/436 (26%), Positives = 207/436 (47%), Gaps = 49/436 (11%)

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
            L++CG    L     +HG +V +G    VF+ N L+  Y  CG +  AR +   ++IK+
Sbjct: 26  ALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLR-ADIKE 84

Query: 178 --LVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKG----------- 224
             +++ N+++ G+ + G +  A E+FD MP++D  SW+ ++    +  G           
Sbjct: 85  PNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCR 144

Query: 225 -------------------DISSARI--------------LFEHMPIKDLISWNSMIDGY 251
                              D+ +A +              LF  +    +   NSM+ GY
Sbjct: 145 ELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGY 204

Query: 252 AKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
           AK+  +  A + F +M ER+V SW++MI   +Q G  +EAL L  EM  +GVR D  +  
Sbjct: 205 AKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYT 264

Query: 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
            +++ACA++ +L  GK +H  + RS   +D  V +ALI++Y KCGS  EA+R+F S+  +
Sbjct: 265 SSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDR 324

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           N +S+ V+I G        ++++ F QM  E +  D      ++  C +      G R  
Sbjct: 325 NSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLG-RQL 383

Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN 491
            S+    G    +   + L+ L ++ G+L+ A  +  SM  + ++  W +++ A     N
Sbjct: 384 HSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSER-DIVSWTSMITAYSQIGN 442

Query: 492 VTLAEVVVEGLVELKA 507
           +  A    +G+    A
Sbjct: 443 IIKAREFFDGMATRNA 458



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 111/461 (24%), Positives = 199/461 (43%), Gaps = 49/461 (10%)

Query: 34  QLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNP 93
           +L T  L +  F  + LL +  S   L+ D    L   I +PN   HN M+ GY +  + 
Sbjct: 45  RLVTVGLASAVFLQNTLLHAYLSCGALS-DARRLLRADIKEPNVITHNIMMNGYAKQGSL 103

Query: 94  QKALSFYVNMKRKG------LLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV 147
             A   +  M R+       L+ D         +CG L       ++ G   K  F  D 
Sbjct: 104 SDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRELAPQLLGLFWKFDFWGDP 163

Query: 148 FVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK 207
            V   L+ M+ +CG++  A  +F   E   +   N +L G+ +   +  A E F++M ++
Sbjct: 164 DVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAER 223

Query: 208 DAISWSIMIDGYRK---------------KKG----------DISSARILF--------- 233
           D +SW++MI    +               +KG           +++   LF         
Sbjct: 224 DVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLH 283

Query: 234 ----EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
                 +P  D    +++I+ YAK G    A+++FN + +RN  SW+++I G  Q+    
Sbjct: 284 AKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFS 343

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           +++ LF +M  + +  D  ++   IS C     L LG+ +H    +S     ++V  +LI
Sbjct: 344 KSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLI 403

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
            +Y KCG L  A  +F SM++++++S+  MI      G   +A + F  M T    ++ +
Sbjct: 404 SLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMAT----RNAI 459

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
            +  +L A    G   +G +++ +M     + P    Y  L
Sbjct: 460 TWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTL 500



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 12/242 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM-KRKGLLVDNYTYPFVL 119
           N+ +A   F+ +   N    N M+  Y Q    +  L  Y  M  +K +  D  TY  + 
Sbjct: 442 NIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLF 501

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           + C  +     G +I G  VK G + +V V N  I MYSKCG +  A+ +F+    KD+V
Sbjct: 502 RGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVV 561

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEH 235
           SWN ++ G+ + G   +A + FD+M  K    D IS+  ++ G     G +   ++ F+ 
Sbjct: 562 SWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGC-SHSGLVQEGKLYFDM 620

Query: 236 MPIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFS-WSIMIDGYAQHGNPK 289
           M     IS     ++ M+D   + G L  A+ L ++MP +     W  ++     HGN +
Sbjct: 621 MTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDE 680

Query: 290 EA 291
            A
Sbjct: 681 LA 682


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 197/615 (32%), Positives = 320/615 (52%), Gaps = 108/615 (17%)

Query: 54  LTSPNTLN-------------MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFY 100
           L  PN LN             M  A  +F ++   +T++ N +IRGYT +   Q+A+ FY
Sbjct: 53  LARPNDLNITRDLCGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFY 112

Query: 101 VNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC 160
             M+ +G+  DN+T+PFV+KACG L+ L+ G ++HG+++K+GF  DV+V N LI MY K 
Sbjct: 113 YRMECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKI 172

Query: 161 GHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM---------------- 204
           G +  A  VF+   ++DLVSWN ++ G+   G+   +   F EM                
Sbjct: 173 GFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISAL 232

Query: 205 -----------------------PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
                                   + D +  + +ID Y  K G +  A  +F  +  K++
Sbjct: 233 GACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMY-GKCGKVDYAERVFNRIYSKNI 291

Query: 242 ISWNSMIDGYAK----IGDLV------------------------AAQQLF--------- 264
           ++WN+MI G  +    I D++                        A +++F         
Sbjct: 292 VAWNAMIGGMQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETA 351

Query: 265 ------------------NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
                             N+M E+N+ SW+ M+  Y Q+   KEAL +F+ +L + ++PD
Sbjct: 352 LVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPD 411

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
            I++   + A A++ +   GK IH ++ +  +  +  +  A++ MY KCG L  AR  F 
Sbjct: 412 AITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFD 471

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            M  K+V+S+N MI    ++GFG  +++ F++M  +G   +   F+ +L ACS SGL  E
Sbjct: 472 GMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDE 531

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G+  F SMK   GI+P +EHY C++DLL R G L++A   +E MP+ P   +WG+LL A 
Sbjct: 532 GWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAAS 591

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           RNH +V LAE+    ++ LK D+ G YVLLSN+YA+AG WE   RI+ +M+++ + K  G
Sbjct: 592 RNHNDVVLAELAARHILSLKHDNTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVG 651

Query: 547 RSVIEIDGNIKEFVS 561
            S+++I+G  + F++
Sbjct: 652 CSMVDINGRSESFIN 666


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 194/583 (33%), Positives = 306/583 (52%), Gaps = 84/583 (14%)

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           N  + N+++R        ++AL  Y  M++ G+  D +T+P V++AC ++        +H
Sbjct: 99  NLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVH 158

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV------ 189
           G VV+MGF  ++ V N L+GMY K G M  AR VFE   ++  VSWN ++ G+       
Sbjct: 159 GHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCH 218

Query: 190 -----------------------------ECGEMGKAREVFDEMPQKD--------AISW 212
                                         CG+  +  E+F  M  +         A+  
Sbjct: 219 GASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVL 278

Query: 213 SIMID-----------GY-------------------RKKKGDISSARILFEHMPIKDLI 242
           S+ +D           GY                     K G++++ARILF  +  K+++
Sbjct: 279 SVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIV 338

Query: 243 SWNSMIDGYAKIGDLVAAQQLF------NEMP--ERNVFSWSIMIDGYAQHGNPKEALYL 294
           SWN++I  YA +G    A  +F      +E P    NV SWS +I G+A  G  +EAL L
Sbjct: 339 SWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALEL 398

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           FR M    V+ + +++   +S CA++ AL LG+ IH  + RS +  +++V   LI+MY K
Sbjct: 399 FRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTK 458

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
            GS  E   +F  +  K++IS+N M+AG G++G GE A++ F QM  +G   D + F+ V
Sbjct: 459 SGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAV 518

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L ACSH+GL  EG  +F  M +   +EP++EHY+C+VDLL RAG L++A  +V+SMP++P
Sbjct: 519 LSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEP 578

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           N  +WG LL +CR H+N  +AE     +  L ++  G Y+LLSNIYA +G WE + ++R 
Sbjct: 579 NACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRI 638

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
             + + +KK  G+S I++   +  F +G   + Q  ELE V +
Sbjct: 639 SAKTKGLKKTPGQSWIQVKKKVYMFSAG---NTQHAELEEVYR 678



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 159/370 (42%), Gaps = 55/370 (14%)

Query: 53  SLTSPNTLNMD--QAERLFNQI----YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK 106
           ++ S   LN D   A  +F  +     +PN     +++  + +     + +  +  M+ +
Sbjct: 206 TMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMR 265

Query: 107 GLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCA 166
           G+         VL     L    EG  IHG VVK GF   +FV N LI +Y K G++  A
Sbjct: 266 GIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAA 325

Query: 167 RSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVF------DEMP--QKDAISWSIMIDG 218
           R +F   + K++VSWN ++  + + G   +A  +F      DE P  + + +SWS +I G
Sbjct: 326 RILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGG 385

Query: 219 YRKKKGDISSARILFEHMPIK--------------------------------------- 239
           +   KG    A  LF  M +                                        
Sbjct: 386 F-ASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDG 444

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           +++  N +I+ Y K G       +F ++  +++ SW+ M+ GY  HG  + A+  F +M+
Sbjct: 445 NILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMI 504

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFM-KRSRITMDMIVQTALIDMYMKCGSL 358
             G  PD ++ +  +SAC+  G +  G+ +   M K  R+   M     ++D+  + G L
Sbjct: 505 KDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLL 564

Query: 359 DEARRIFYSM 368
            EA ++  SM
Sbjct: 565 QEASKVVKSM 574



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 164/352 (46%), Gaps = 49/352 (13%)

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK---DLVSWNLVLRGFV 189
           +IH +++  G     F+   ++ +Y+  G +  A+ VFE S I+   +L+ WN +LR  V
Sbjct: 52  QIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANV 111

Query: 190 ECGEMGKAREVFDEMPQ----KDAISWSIMID-----GYRK------------------- 221
             G   +A E++  M +     D  ++ ++I      G RK                   
Sbjct: 112 AHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLH 171

Query: 222 ----------KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP--- 268
                     K G +  AR +FE M ++  +SWN+M+ GYA   D   A ++F  M    
Sbjct: 172 VGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAG 231

Query: 269 -ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK 327
            E N+ +W+ ++  +A+ G   E + LF  M  +G+     ++   +S    + A D GK
Sbjct: 232 LEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGK 291

Query: 328 WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
            IH ++ +      + V+ +LI +Y K G+++ AR +F  +  KN++S+N +I+     G
Sbjct: 292 VIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLG 351

Query: 388 FGEEALKCFAQME-TEGIP---KDDLIFLGVLIACSHSGLATEGYRIFQSMK 435
           + +EA   F Q+E T+  P    + + +  V+   +  G   E   +F+ M+
Sbjct: 352 WCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQ 403



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 106/229 (46%), Gaps = 13/229 (5%)

Query: 74  QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
           +PN    + +I G+      ++AL  +  M+   +  ++ T   VL  C  L  L  G E
Sbjct: 373 RPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGRE 432

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           IHG VV+     ++ V NGLI MY+K G       VFE  E KDL+SWN ++ G+   G 
Sbjct: 433 IHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGL 492

Query: 194 MGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKD------LIS 243
              A   FD+M     + D +++  ++       G ++  R LF+ M IK+      +  
Sbjct: 493 GENAIRTFDQMIKDGFEPDGVTFVAVLSAC-SHAGLVAEGRELFDKM-IKEFRVEPQMEH 550

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEA 291
           +  M+D   + G L  A ++   MP E N   W  +++    H N + A
Sbjct: 551 YACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVA 599



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 132/295 (44%), Gaps = 12/295 (4%)

Query: 251 YAKIGDLVAAQQLFNEMPER---NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           YA  G +  AQ++F   P     N+  W+ ++     HG  +EAL ++  M   GV  D 
Sbjct: 76  YAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADG 135

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
            +    I ACA +G+  L + +H  +       ++ V   L+ MY K G +D+AR++F  
Sbjct: 136 FTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFER 195

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           M  ++ +S+N M++G  +N     A + F  M + G+  + + +  +L + +  G   E 
Sbjct: 196 MAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVET 255

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN----LALWGTLL 483
             +F  M R  GI    E  + ++ +       ++   ++    +K      L +  +L+
Sbjct: 256 MELFGRM-RMRGIGATAEALAVVLSVSVDLAAFDEG-KVIHGYVVKGGFENYLFVKNSLI 313

Query: 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
                H NV  A ++    +E+K  +   +  L + YAD G  + A  I   + K
Sbjct: 314 CLYGKHGNVNAARIL---FLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEK 365


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 179/516 (34%), Positives = 295/516 (57%), Gaps = 19/516 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ A  +F+++ + +    +TMIR  +++     AL     M    +         ++  
Sbjct: 145 VEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNL 204

Query: 122 CGVLMGLVEGTEIHGEVVK------MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI 175
                 +  G  +H  V++      MG    V     L+ MY+KCGH+G AR +F G   
Sbjct: 205 FADTANMRMGKAMHAYVIRNSNNEHMG----VPTTTALLDMYAKCGHLGLARQLFNGLTQ 260

Query: 176 KDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAIS-----WSIMID-GYRK--KKGDIS 227
           K +VSW  ++ G +    + +  ++F  M +++         S++++ G+    + G   
Sbjct: 261 KTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQL 320

Query: 228 SARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN 287
            A IL     +   ++  +++D Y K  D+  A+ LF+    R+V  W+ M+  YAQ   
Sbjct: 321 HAYILRNGFSVSLALA-TALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANC 379

Query: 288 PKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA 347
             +A  LF +M   GVRP  ++++  +S CA  GALDLGKW+H ++ + R+ +D I+ TA
Sbjct: 380 IDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTA 439

Query: 348 LIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407
           L+DMY KCG ++ A R+F     +++  +N +I G  M+G+GEEAL  FA+ME +G+  +
Sbjct: 440 LVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPN 499

Query: 408 DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467
           D+ F+G+L ACSH+GL TEG ++F+ M    G+ P++EHY C+VDLL RAG L++A  ++
Sbjct: 500 DITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMI 559

Query: 468 ESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWE 527
           +SMP+KPN  +WG L+ ACR H+N  L E+    L+E++ ++CG  VL+SNIYA A  W 
Sbjct: 560 KSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWS 619

Query: 528 HALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
            A  +RK M+   +KKE G SVIE++G + EF+ G+
Sbjct: 620 DAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGD 655



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/364 (30%), Positives = 183/364 (50%), Gaps = 16/364 (4%)

Query: 112 NYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE 171
           N+  P VLKACG +     G EIHG V+K G   DVFV N L+ MY +C  +  AR VF+
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153

Query: 172 GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM------PQKDAISW--SIMIDGYRKKK 223
               +D+VSW+ ++R      E   A E+  EM      P + A+    ++  D    + 
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRM 213

Query: 224 GDISSARILF----EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMI 279
           G    A ++     EHM +    +  +++D YAK G L  A+QLFN + ++ V SW+ MI
Sbjct: 214 GKAMHAYVIRNSNNEHMGVP---TTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMI 270

Query: 280 DGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRIT 339
            G  +    +E   LF  M  + + P+ I+++  I  C   GAL LGK +H ++ R+  +
Sbjct: 271 AGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFS 330

Query: 340 MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
           + + + TAL+DMY KC  +  AR +F S   ++V+ +  M++        ++A   F QM
Sbjct: 331 VSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQM 390

Query: 400 ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
            T G+    +  + +L  C+ +G    G  +   + +   +E      + LVD+ ++ G+
Sbjct: 391 RTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKE-RVEVDCILNTALVDMYAKCGD 449

Query: 460 LEQA 463
           +  A
Sbjct: 450 INAA 453



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 76/177 (42%), Gaps = 35/177 (19%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A RLF +    +  M N +I G+      ++AL  +  M+R+G+  ++ T+  +L 
Sbjct: 449 DINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLH 508

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC     + EG ++  ++V               G+  +  H GC         + DL+ 
Sbjct: 509 ACSHAGLVTEGKKLFEKMVHT------------FGLVPQIEHYGC---------MVDLLG 547

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQK-DAISWSIMIDGYRKKK----GDISSARIL 232
                      G + +A E+   MP K + I W  ++   R  K    G++++ ++L
Sbjct: 548 ---------RAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLL 595


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 190/577 (32%), Positives = 304/577 (52%), Gaps = 70/577 (12%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGY-------------------------------TQS 90
           +D A RLF+QI +P  +  N+M+ GY                               +QS
Sbjct: 189 VDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQS 248

Query: 91  SNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVV 150
              ++AL   V M RKG+ +D+ TY   L AC  L  L  G ++H +V++     D +V 
Sbjct: 249 GRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA 308

Query: 151 NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK--- 207
           + LI +Y+KCG    A+ VF   + ++ VSW +++ G ++     K+ E+F++M  +   
Sbjct: 309 SALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMA 368

Query: 208 -DAISWSIMIDG----------------------------------YRKKKGDISSARIL 232
            D  + + +I G                                     K GD+ +A  +
Sbjct: 369 IDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFV 428

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
           F  M  +D++SW SMI  Y++IG+++ A++ F+ M  RN  +W+ M+  Y QHG  ++ L
Sbjct: 429 FSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGL 488

Query: 293 YLFREMLCQ-GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
            ++  ML Q  V PD ++ +     CA +GA  LG  I     ++ + +++ V  A I M
Sbjct: 489 KMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITM 548

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y KCG + EA+++F  +  K+V+S+N MI G   +G G++A K F  M ++G   D + +
Sbjct: 549 YSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISY 608

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           + VL  CSHSGL  EG   F  M R  GI P LEH+SC+VDLL RAG L +A ++++ MP
Sbjct: 609 VAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMP 668

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           MKP   +WG LL AC+ H N  LAE+  + + EL + D G Y+LL+ IY+DAG  + + +
Sbjct: 669 MKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQ 728

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQ 568
           +RK+MR + IKK  G S +E++  +  F + ++   Q
Sbjct: 729 VRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQ 765



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 110/449 (24%), Positives = 205/449 (45%), Gaps = 43/449 (9%)

Query: 41  ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFY 100
           I EP  ++  +M        ++  AE LF+++ + +    NT++ GY Q+      L  +
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETF 125

Query: 101 VNMKRKGLLVDN-YTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSK 159
           V+M R G  + N +T+  V+K+CG L       ++ G   K  F  D  V   L+ M+ +
Sbjct: 126 VSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVR 185

Query: 160 CGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY 219
           CG++  A  +F   E   +   N +L G+ +   +  A E F++M ++D +SW++MI   
Sbjct: 186 CGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAAL 245

Query: 220 RK---------------KKG----------DISSARILF-------------EHMPIKDL 241
            +               +KG           +++   LF               +P  D 
Sbjct: 246 SQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDP 305

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
              +++I+ YAK G    A+++FN + +RN  SW+++I G  Q+    +++ LF +M  +
Sbjct: 306 YVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAE 365

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
            +  D  ++   IS C     L LG+ +H    +S     ++V  +LI +Y KCG L  A
Sbjct: 366 LMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNA 425

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
             +F SM++++++S+  MI      G   +A + F  M T    ++ + +  +L A    
Sbjct: 426 EFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMAT----RNAITWNAMLGAYIQH 481

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
           G   +G +++ +M     + P    Y  L
Sbjct: 482 GAEEDGLKMYSAMLSQKDVTPDWVTYVTL 510



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 115/462 (24%), Positives = 197/462 (42%), Gaps = 75/462 (16%)

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCAR---------- 167
            L++CG    L     +HG +V +G    VF+ N L+  Y  CG +  AR          
Sbjct: 10  ALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEP 69

Query: 168 ----------------------SVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM- 204
                                  +F+    +D+ SWN ++ G+ +        E F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 205 ----------------------------PQKDAISW-----------SIMIDGYRKKKGD 225
                                       PQ   + W           + ++D +  + G 
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMF-VRCGY 188

Query: 226 ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
           +  A  LF  +    +   NSM+ GYAK+  +  A + F +M ER+V SW++MI   +Q 
Sbjct: 189 VDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQS 248

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
           G  +EAL L  EM  +GVR D  +   +++ACA++ +L  GK +H  + RS   +D  V 
Sbjct: 249 GRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA 308

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
           +ALI++Y KCGS  EA+R+F S+  +N +S+ V+I G        ++++ F QM  E + 
Sbjct: 309 SALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMA 368

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
            D      ++  C +      G R   S+    G    +   + L+ L ++ G+L+ A  
Sbjct: 369 IDQFALATLISGCFNRMDLCLG-RQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEF 427

Query: 466 IVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
           +  SM  + ++  W +++ A     N+  A    +G+    A
Sbjct: 428 VFSSMSER-DIVSWTSMITAYSQIGNIIKAREFFDGMATRNA 468



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 12/242 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM-KRKGLLVDNYTYPFVL 119
           N+ +A   F+ +   N    N M+  Y Q    +  L  Y  M  +K +  D  TY  + 
Sbjct: 452 NIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLF 511

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           + C  +     G +I G  VK G + +V V N  I MYSKCG +  A+ +F+    KD+V
Sbjct: 512 RGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVV 571

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEH 235
           SWN ++ G+ + G   +A + FD+M  K    D IS+  ++ G     G +   ++ F+ 
Sbjct: 572 SWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGC-SHSGLVQEGKLYFDM 630

Query: 236 MPIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFS-WSIMIDGYAQHGNPK 289
           M     IS     ++ M+D   + G L  A+ L ++MP +     W  ++     HGN +
Sbjct: 631 MTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDE 690

Query: 290 EA 291
            A
Sbjct: 691 LA 692


>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 168/435 (38%), Positives = 264/435 (60%), Gaps = 2/435 (0%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D+   N ++  Y++ G M      FE    +D+VSWNL++ GFVE G++  + E F+++P
Sbjct: 57  DLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIP 116

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
             + +SW  M+ G+  + G I+ AR LF+ MPI+++++WN+MI  Y +   +  A  LF 
Sbjct: 117 NPNTVSWVTMLCGF-ARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFM 175

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
           EMPE+N  SW+ +I+GY + G   EA  L  +M  +  +PD  +    +S+CA + AL +
Sbjct: 176 EMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRN-KPDQSTFACGLSSCAHLAALQV 234

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
           GK +H  + +S    D+ V  ALI MY KCGS+  A  +F  +   +V+S+N +IA   +
Sbjct: 235 GKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYAL 294

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           NG G EALK F +ME EG+  D++ F+G+L ACSH GL  +G ++F+ M +   IEP  E
Sbjct: 295 NGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAE 354

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
           HY+C+VDLL RAG LE+A  +V  M +  N  +WG LL ACR H N+ LA+   E L+E 
Sbjct: 355 HYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEF 414

Query: 506 KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIF 565
           +      YVLLSN+ A+AG W+   R+R++M+++  +K+ G S IE+   +  F+S +  
Sbjct: 415 EPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVHAFLSEDPA 474

Query: 566 DVQSEELELVIQSFV 580
             ++ EL  +++S  
Sbjct: 475 HPRAVELCHILRSLT 489



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 168/348 (48%), Gaps = 54/348 (15%)

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
           D+A RLF+ +   +    N+M+ GYT++   +  L F+  M  + ++  N          
Sbjct: 44  DEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNL--------- 94

Query: 123 GVLMGLVEGTEIHGE---VVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
            ++ G VE  +++       K+     V  V  L G +++ G +  AR +F+   I+++V
Sbjct: 95  -MVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCG-FARFGKIAEARRLFDQMPIRNVV 152

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239
           +WN ++  +V+   + +A  +F EMP+K++ISW+ +I+GY  + G +  AR L   MP +
Sbjct: 153 AWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGY-VRMGKLDEARQLLNQMPYR 211

Query: 240 --------------------------------------DLISWNSMIDGYAKIGDLVAAQ 261
                                                 DL   N++I  YAK G + +A+
Sbjct: 212 NKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAE 271

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
            LF ++   +V SW+ +I  YA +GN +EAL LF +M  +GV PD ++ +G +SAC+ VG
Sbjct: 272 LLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVG 331

Query: 322 ALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
            +D G K     ++   I         ++D+  + G L+EA ++   M
Sbjct: 332 LIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGM 379



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 139/277 (50%), Gaps = 12/277 (4%)

Query: 188 FVECGEMGKAREVFDEMPQK-DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNS 246
           +   GE+ KAR +F+ +P K + +  + M+ GY K +     AR LF+ MP KDL+SWNS
Sbjct: 5   YTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNR-QFDEARRLFDAMPAKDLVSWNS 63

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           M+ GY + G++    Q F EM ER+V SW++M+DG+ + G+   +   F ++      P+
Sbjct: 64  MLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKI----PNPN 119

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
            +S +  +   A+ G +   + +   M       +++   A+I  Y++   +DEA  +F 
Sbjct: 120 TVSWVTMLCGFARFGKIAEARRLFDQMP----IRNVVAWNAMIAAYVQNCHVDEAISLFM 175

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            M +KN IS+  +I G    G  +EA +   QM     P D   F   L +C+H      
Sbjct: 176 EMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNKP-DQSTFACGLSSCAHLAALQV 234

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
           G ++ Q + +  G    L   + L+ + ++ G +  A
Sbjct: 235 GKQLHQLVMK-SGYATDLFVSNALITMYAKCGSISSA 270



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 125/301 (41%), Gaps = 45/301 (14%)

Query: 41  ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFY 100
           I  P T+S + M         + +A RLF+Q+   N    N MI  Y Q+ +  +A+S +
Sbjct: 115 IPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLF 174

Query: 101 VNMKRKGLL------------------------------VDNYTYPFVLKACGVLMGLVE 130
           + M  K  +                               D  T+   L +C  L  L  
Sbjct: 175 MEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNKPDQSTFACGLSSCAHLAALQV 234

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G ++H  V+K G+  D+FV N LI MY+KCG +  A  +F+  +  D+VSWN ++  +  
Sbjct: 235 GKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYAL 294

Query: 191 CGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHM-------PIK 239
            G   +A ++F +M       D +++ + I       G I     LF+ M       P+ 
Sbjct: 295 NGNGREALKLFHKMEVEGVAPDEVTF-VGILSACSHVGLIDQGLKLFKCMVQAYNIEPLA 353

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
           +   +  M+D   + G L  A QL   M    N   W  ++     HGN + A +   ++
Sbjct: 354 E--HYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKL 411

Query: 299 L 299
           L
Sbjct: 412 L 412


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 190/577 (32%), Positives = 304/577 (52%), Gaps = 70/577 (12%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGY-------------------------------TQS 90
           +D A RLF+QI +P  +  N+M+ GY                               +QS
Sbjct: 189 VDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQS 248

Query: 91  SNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVV 150
              ++AL   V M RKG+ +D+ TY   L AC  L  L  G ++H +V++     D +V 
Sbjct: 249 GRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA 308

Query: 151 NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK--- 207
           + LI +Y+KCG    A+ VF   + ++ VSW +++ G ++     K+ E+F++M  +   
Sbjct: 309 SALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMA 368

Query: 208 -DAISWSIMIDG----------------------------------YRKKKGDISSARIL 232
            D  + + +I G                                     K GD+ +A  +
Sbjct: 369 IDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFV 428

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
           F  M  +D++SW SMI  Y++IG+++ A++ F+ M  RN  +W+ M+  Y QHG  ++ L
Sbjct: 429 FSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGL 488

Query: 293 YLFREMLCQ-GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
            ++  ML Q  V PD ++ +     CA +GA  LG  I     ++ + +++ V  A I M
Sbjct: 489 KMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITM 548

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y KCG + EA+++F  +  K+V+S+N MI G   +G G++A K F  M ++G   D + +
Sbjct: 549 YSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISY 608

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           + VL  CSHSGL  EG   F  M R  GI P LEH+SC+VDLL RAG L +A ++++ MP
Sbjct: 609 VAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMP 668

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           MKP   +WG LL AC+ H N  LAE+  + + EL + D G Y+LL+ IY+DAG  + + +
Sbjct: 669 MKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQ 728

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQ 568
           +RK+MR + IKK  G S +E++  +  F + ++   Q
Sbjct: 729 VRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQ 765



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/449 (24%), Positives = 206/449 (45%), Gaps = 43/449 (9%)

Query: 41  ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFY 100
           I EP  ++  +M        ++  AE LF+++ + +    NT++ GY Q+      L  +
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETF 125

Query: 101 VNMKRKGLLVDN-YTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSK 159
           V+M R G  + N +T+  V+K+CG L       ++ G   K  F  D  V   L+ M+ +
Sbjct: 126 VSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVR 185

Query: 160 CGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY 219
           CG++  A  +F   E   +   N +L G+ +   +  A E F++M ++D +SW++MI   
Sbjct: 186 CGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAAL 245

Query: 220 RK---------------KKG----------DISSARILF-------------EHMPIKDL 241
            +               +KG           +++   LF               +P  D 
Sbjct: 246 SQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDP 305

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
              +++I+ YAK G    A+++FN + +RN  SW+++I G  Q+    +++ LF +M  +
Sbjct: 306 YVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAE 365

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
            +  D  ++   IS C     L LG+ +H    +S     ++V  +LI +Y KCG L  A
Sbjct: 366 LMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNA 425

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
             +F SM++++++S+  MI      G   +A + F  M+T    ++ + +  +L A    
Sbjct: 426 EFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDT----RNAITWNAMLGAYIQH 481

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
           G   +G +++ +M     + P    Y  L
Sbjct: 482 GAEEDGLKMYSAMLSQKDVTPDWVTYVTL 510



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 114/457 (24%), Positives = 196/457 (42%), Gaps = 75/457 (16%)

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCAR---------- 167
            L++CG    L     +HG +V +G    VF+ N L+  Y  CG +  AR          
Sbjct: 10  ALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEP 69

Query: 168 ----------------------SVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM- 204
                                  +F+    +D+ SWN ++ G+ +        E F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 205 ----------------------------PQKDAISW-----------SIMIDGYRKKKGD 225
                                       PQ   + W           + ++D +  + G 
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMF-VRCGY 188

Query: 226 ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
           +  A  LF  +    +   NSM+ GYAK+  +  A + F +M ER+V SW++MI   +Q 
Sbjct: 189 VDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQS 248

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
           G  +EAL L  EM  +GVR D  +   +++ACA++ +L  GK +H  + RS   +D  V 
Sbjct: 249 GRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVA 308

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
           +ALI++Y KCGS  EA+R+F S+  +N +S+ V+I G        ++++ F QM  E + 
Sbjct: 309 SALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMA 368

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
            D      ++  C +      G R   S+    G    +   + L+ L ++ G+L+ A  
Sbjct: 369 IDQFALATLISGCFNRMDLCLG-RQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEF 427

Query: 466 IVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
           +  SM  + ++  W +++ A     N+  A    +G+
Sbjct: 428 VFSSMSER-DIVSWTSMITAYSQIGNIIKAREFFDGM 463


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 181/504 (35%), Positives = 296/504 (58%), Gaps = 13/504 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           + +A R+F+ +   N     +M+RGY ++ +  +A   + +M  K ++  ++T       
Sbjct: 102 LSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVV--SWTV------ 153

Query: 122 CGVLMGLVEGTEIHG--EVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
             +L GL++   +    ++  M    DV  V  +IG Y + G +  AR++F+    +++V
Sbjct: 154 --MLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVV 211

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239
           +W  ++ G+   G++  AR++F+ MP+++ +SW+ M+ GY    G +  A  LF+ MP+K
Sbjct: 212 TWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGY-THSGRMREASSLFDAMPVK 270

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
            ++  N MI G+   G++  A+++F  M ER+  +WS MI  Y + G   EAL LFR M 
Sbjct: 271 PVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQ 330

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
            +G+  +  S++  +S C  + +LD GK +H  + RS    D+ V + LI MY+KCG+L 
Sbjct: 331 REGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLV 390

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
            A+++F     K+V+ +N MI G   +G GEEAL  F  M + G+P DD+ F+GVL ACS
Sbjct: 391 RAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACS 450

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           +SG   EG  +F++MK    +EP +EHY+CLVDLL RA ++ +A+ +VE MPM+P+  +W
Sbjct: 451 YSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVW 510

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
           G LL ACR H  + LAEV VE L +L+  + G YVLLSN+YA  G W     +R+ ++ R
Sbjct: 511 GALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKAR 570

Query: 540 KIKKETGRSVIEIDGNIKEFVSGE 563
            + K  G S IE++  +  F  G+
Sbjct: 571 SVTKLPGCSWIEVEKKVHMFTGGD 594



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 171/327 (52%), Gaps = 21/327 (6%)

Query: 154 IGMYSKCGHMGCARSVFEGSEI--KDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAIS 211
           I  Y++ G +  AR VF+ + +  + + SWN ++  + E  +  +A  +F++MPQ++ +S
Sbjct: 29  IACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVS 88

Query: 212 WSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271
           W+ +I G+  K G +S AR +F+ MP ++++SW SM+ GY + GD+  A++LF  MP +N
Sbjct: 89  WNGLISGH-IKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKN 147

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV 331
           V SW++M+ G  Q G   +A  LF  M       DV++V   I    + G LD  + +  
Sbjct: 148 VVSWTVMLGGLLQEGRVDDARKLFDMM----PEKDVVAVTNMIGGYCEEGRLDEARALFD 203

Query: 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391
            M +  +    +  TA++  Y + G +D AR++F  M ++N +S+  M+ G   +G   E
Sbjct: 204 EMPKRNV----VTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMRE 259

Query: 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
           A   F  M  + +   + + +G  +    +G   +  R+F+ MK     E     +S ++
Sbjct: 260 ASSLFDAMPVKPVVVCNEMIMGFGL----NGEVDKARRVFKGMK-----ERDNGTWSAMI 310

Query: 452 DLLSRAGELEQALNIVESMPMKPNLAL 478
            +  R G   +AL +   M  +  LAL
Sbjct: 311 KVYERKGYELEALGLFRRM-QREGLAL 336



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 177/371 (47%), Gaps = 44/371 (11%)

Query: 151 NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAI 210
           N ++  Y +      A  +FE    ++ VSWN ++ G ++ G + +AR VFD MP ++ +
Sbjct: 59  NAMVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVV 118

Query: 211 SWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER 270
           SW+ M+ GY  + GD++ A  LF HMP K+++SW  M+ G  + G +  A++LF+ MPE+
Sbjct: 119 SWTSMVRGY-VRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEK 177

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWI 329
           +V + + MI GY + G   EA  LF EM     + +V++    +S  A+ G +D+  K  
Sbjct: 178 DVVAVTNMIGGYCEEGRLDEARALFDEM----PKRNVVTWTAMVSGYARNGKVDVARKLF 233

Query: 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN--- 386
            V  +R+ ++      TA++  Y   G + EA  +F +M  K V+  N MI G G+N   
Sbjct: 234 EVMPERNEVSW-----TAMLLGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEV 288

Query: 387 ----------------------------GFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
                                       G+  EAL  F +M+ EG+  +    + VL  C
Sbjct: 289 DKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVC 348

Query: 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
                   G ++   + R    +  L   S L+ +  + G L +A  +    P+K ++ +
Sbjct: 349 VSLASLDHGKQVHAQLVR-SEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLK-DVVM 406

Query: 479 WGTLLLACRNH 489
           W +++     H
Sbjct: 407 WNSMITGYSQH 417



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 5/123 (4%)

Query: 15  LVSLLQIS---KTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           L+S+L +     +  H  Q+ AQL  ++   + +  S L+         N+ +A+++FN+
Sbjct: 341 LISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCG--NLVRAKQVFNR 398

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
               +  M N+MI GY+Q    ++AL+ + +M   G+  D+ T+  VL AC     + EG
Sbjct: 399 FPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEG 458

Query: 132 TEI 134
            E+
Sbjct: 459 LEL 461


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 180/549 (32%), Positives = 310/549 (56%), Gaps = 21/549 (3%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLF-NQIYQPNTYMHNTMIRGYT 88
           +I + +  N  +  P +++ L+   +  N +N   A  +F +  ++ N +  N +I G+ 
Sbjct: 58  EIHSYMLINGFLNSPLSITSLINMYSKCNQMNF--ALSIFSDPTHEINVFAFNAIISGFI 115

Query: 89  QSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF 148
            +  P++   FY  M+ +G++ D +T+P  +KAC   + ++E  +IHG + K G   DVF
Sbjct: 116 TNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKAC---LDVLEIKKIHGLLFKFGLELDVF 172

Query: 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKD 208
           + + L+  Y K G M  A+  FE   I+D+V WN ++ G+ + G+     E F  M  + 
Sbjct: 173 IGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDES 232

Query: 209 AISWSIMIDGYRKK---KGDISSARILFEHMPIK-----DLISWNSMIDGYAKIGDLVAA 260
            +     + G        GD+++ RI+     +K      +   NS+ID Y K   +  A
Sbjct: 233 VVPSRFTVTGVLSVFAVMGDLNNGRII-HGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDA 291

Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
            ++F  M E+++FSW+ ++  + Q G+    L L   ML  G++PD+++V   + AC+ +
Sbjct: 292 LEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHL 351

Query: 321 GALDLGKWIHVFM------KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
            AL  G+ IH +M      K  +   D++++ A+IDMY KCGS+ +A  +F  M+ K+V 
Sbjct: 352 AALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVA 411

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434
           S+N+MI G GM+G+G EAL+ F++M    +  D++ F+GVL ACSH+G  ++G      M
Sbjct: 412 SWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQM 471

Query: 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTL 494
           K    + P +EHY+C++D+L RAG+L++A  +  +MP++ N  +W  LL ACR H++  L
Sbjct: 472 KSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVL 531

Query: 495 AEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDG 554
           AEV  + + EL+ + CG YVL+SN+Y   G +E  L +R  MR++ ++K  G S IE+  
Sbjct: 532 AEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKN 591

Query: 555 NIKEFVSGE 563
            +  FVS +
Sbjct: 592 GVHVFVSAD 600



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 117/474 (24%), Positives = 196/474 (41%), Gaps = 84/474 (17%)

Query: 95  KALSFYVNMKRKGLLVDNYTYPFVLKACGVLM-------GLVEGTEIHGEVVKMGFLCDV 147
           K    + N       + ++  P+ L  C   +        L +G EIH  ++  GFL   
Sbjct: 13  KKSPLFFNFSSISTAIQSFQQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSP 72

Query: 148 FVVNGLIGMYSKCGHMGCARSVF-EGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM-- 204
             +  LI MYSKC  M  A S+F + +   ++ ++N ++ GF+  G   +  E + +M  
Sbjct: 73  LSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRN 132

Query: 205 ----PQK------------------------------DAISWSIMIDGYRKKKGDISSAR 230
               P K                              D    S +++ Y  K G +  A+
Sbjct: 133 EGVIPDKFTFPCAIKACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYL-KFGLMEHAQ 191

Query: 231 ILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
           + FE +PI+D++ WN+M++GYA+IG          EM                       
Sbjct: 192 VAFEELPIRDVVLWNAMVNGYAQIGQF--------EM----------------------- 220

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
            L  FR M  + V P   +V G +S  A +G L+ G+ IH F  +      + V  +LID
Sbjct: 221 VLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLID 280

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           MY KC  +++A  IF  M +K++ S+N +++     G  +  L+   +M   GI  D + 
Sbjct: 281 MYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVT 340

Query: 411 FLGVLIACSH-----SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
              VL ACSH      G    GY I   + +       +   + ++D+ ++ G +  A  
Sbjct: 341 VTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHL 400

Query: 466 IVESMPMKPNLALWGTLLLACRNH--QNVTLAEVVVEGLVELKADDCGLYVLLS 517
           + E M  K ++A W  +++    H   N  L        V+LK D+     +LS
Sbjct: 401 VFERMSNK-DVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLS 453


>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 186/502 (37%), Positives = 296/502 (58%), Gaps = 20/502 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           MD+AE LFN++ + N    N M+ GY  + + +KA+ F+  M ++    D+ +   ++  
Sbjct: 168 MDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKR----DSASLRALISG 223

Query: 122 CGVLMGLVEGTEI---HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE------- 171
                 LVE   I   +G  V  G L D +  N LI  Y + G    AR +F+       
Sbjct: 224 LIQNDKLVEAERILLQYGGNVGKGDLVDAY--NTLIAGYGQKGMAYEARKLFDRIPLCCD 281

Query: 172 -GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR 230
            G   ++++SWN ++  +V  G++  ARE+FD+M ++D  SW+ MI GY +   D+  A 
Sbjct: 282 CGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQIL-DMKEAS 340

Query: 231 ILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
            LF  MP  D +SWN MI G+++IG L  A  LF  +PE+++ SW+ MI GY ++ + K 
Sbjct: 341 NLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKG 400

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
           A+ +F +M  +G +PD  ++   +SACA +  L LG  IH  + ++ I  D+ +  +L+ 
Sbjct: 401 AMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTKAFIA-DLPINNSLVT 459

Query: 351 MYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           MY +CG++ EAR +F  M  +++VIS+N MI G   +GF  EAL+ F  M+   +    +
Sbjct: 460 MYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYI 519

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            F+ VL AC+H+GL  EG R F SM    GI+P++EHY+ LVD++ R G+LE+A++++ S
Sbjct: 520 TFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINS 579

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           MP +P+ A+WG LL AC+ H NV +A    E L++L+ +    YVLL N+YAD G W+ A
Sbjct: 580 MPCEPDKAVWGALLGACKVHNNVEMARAAAEALMKLQPESSAPYVLLHNMYADVGRWDDA 639

Query: 530 LRIRKMMRKRKIKKETGRSVIE 551
             +R MM K  ++K+ G S ++
Sbjct: 640 AEMRTMMEKNNVQKDAGYSRVD 661



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 190/386 (49%), Gaps = 59/386 (15%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           + + +N  I    + G +  AR +F+ +E  + ++WN ++  +V+  EM KAR++F+EMP
Sbjct: 56  EFYSLNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMP 115

Query: 206 QKDAISWSIMIDGYRKKKGD-ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
            +D +SW++M+ GY    G  +  AR +F+ MP  D +SWN+M+ GYAK G +  A++LF
Sbjct: 116 NRDIVSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGMMDKAEELF 175

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ----- 319
           NEMPERNV SW+ M+ GY  +G+ ++A+  F+ M     + D  S+   IS   Q     
Sbjct: 176 NEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLM----PKRDSASLRALISGLIQNDKLV 231

Query: 320 ------------VGALDL-----------GKWIHVFMKR---SRITM---------DMIV 344
                       VG  DL           G+    +  R    RI +         ++I 
Sbjct: 232 EAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVIS 291

Query: 345 QTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGI 404
             ++I  Y++ G +  AR +F  M +++  S+N MI+G       +EA   F++M     
Sbjct: 292 WNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRM----- 346

Query: 405 PKDDLIFLGVLIA-CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
           P+ D +   ++I+  S  G     + +F+ +      E  L  ++ ++    +  + + A
Sbjct: 347 PEPDTLSWNMMISGFSEIGSLKLAHDLFKRIP-----EKSLVSWNSMISGYEKNEDYKGA 401

Query: 464 LNIVESMPM---KPNLALWGTLLLAC 486
           +NI   M +   KP+     ++L AC
Sbjct: 402 MNIFLQMQLEGKKPDRHTLSSILSAC 427



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 169/361 (46%), Gaps = 56/361 (15%)

Query: 29  LQILAQLTTNDLIT---EPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIR 85
           +QIL     ++L +   EP TLS  +M        ++  A  LF +I + +    N+MI 
Sbjct: 331 VQILDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMIS 390

Query: 86  GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC 145
           GY ++ + + A++ ++ M+ +G   D +T   +L AC  L+ LV GT+IH ++V   F+ 
Sbjct: 391 GYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIH-QLVTKAFIA 449

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEI-KDLVSWNLVLRGFVECGEMGKAREVFDEM 204
           D+ + N L+ MYS+CG +  AR VF+   + +D++SWN ++ G+   G   +A ++FD M
Sbjct: 450 DLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLM 509

Query: 205 PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
                            K+ ++  + I F            S+++  A  G +   ++ F
Sbjct: 510 -----------------KQCNVQPSYITFI-----------SVLNACAHAGLIEEGRREF 541

Query: 265 NEMPERN-----VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
           N M   +     V  ++ ++D   +HG  +EA+ L   M C+   PD  +V GA+    +
Sbjct: 542 NSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCE---PDK-AVWGALLGACK 597

Query: 320 VGALDLGKWIHVFMKRSRITMDMIVQTA-------LIDMYMKCGSLDEARRIFYSMTKKN 372
           V         +V M R+     M +Q         L +MY   G  D+A  +   M K N
Sbjct: 598 VHN-------NVEMARAAAEALMKLQPESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNN 650

Query: 373 V 373
           V
Sbjct: 651 V 651


>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 196/562 (34%), Positives = 309/562 (54%), Gaps = 50/562 (8%)

Query: 51  LMSLTSPN--------TLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSS--NPQKALSFY 100
           L  LT+PN        T+   +     +++   N ++ NTMIR   ++        L +Y
Sbjct: 20  LHPLTNPNKLPRIHGNTIATVEDPSAASRLDCANVFVWNTMIRKQVENGLITRDPPLLYY 79

Query: 101 VNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC 160
           +   R GL  + +T+ ++LKA      + EG E+H  VV+ GF C  FV   L+G Y  C
Sbjct: 80  MQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVAC 139

Query: 161 GHMGCARSVFEGSEIKDLVSWNLVLRGFV------------------------------- 189
           G +G  R VF+      LV W L++R +V                               
Sbjct: 140 GLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAISTVV 199

Query: 190 -ECGEMG-----KAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
             CG +G     KA   F E    + DA   S +I  Y  + G +  A   F+  P+K++
Sbjct: 200 SACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTY-GECGSLDYAYRFFQETPMKNI 258

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
           + WN+MI    +  +L   +QLF  MP+R+V SW+ MI G+A+ G  +EAL  F EM   
Sbjct: 259 VVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFS 318

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
           GV P+ ++++  +SACA  GALD G WIH ++ ++ +  D  + ++LIDMY KCG +D+A
Sbjct: 319 GVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKA 378

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
            +IF   T++++ ++  ++ GL M+G GE+AL  F++M+   +  DD+  +GVL AC+H+
Sbjct: 379 VQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHA 438

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           GL  +G+  FQSM++  G+ PK+EHY C+VDLL R G L++A +++  MPM+ N  +WG 
Sbjct: 439 GLLDQGWWYFQSMEKVFGLVPKVEHYGCMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGA 498

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
            L ACR H NV L EV    L+ L   D    V+LSN+YA+   W+ ++ +RK ++K+ +
Sbjct: 499 FLSACRVHNNVELGEVAARRLLGLDPRDPWARVMLSNMYAEEAKWDRSMGLRKEIKKKGL 558

Query: 542 KKETGRSVIEIDGNIKEFVSGE 563
           KK  G S IE++G++  F+ G+
Sbjct: 559 KKSPGCSSIEVNGSVHGFLVGD 580


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 185/556 (33%), Positives = 311/556 (55%), Gaps = 29/556 (5%)

Query: 22  SKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLN-------------MDQAERL 68
           SKT T    I+A    N     P    +L   +   NT++             + +A ++
Sbjct: 44  SKTVTSWNAIVAGYFHN---KRPAEAQKLFDKMPERNTISWNGLVSGYVKNGMISEARKV 100

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           F+++ + N     +M+RGY Q     +A   +  M  K ++  ++T         +L GL
Sbjct: 101 FDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVV--SWTV--------MLGGL 150

Query: 129 VEGTEIH--GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
           +E   +     +  M  + DV     +IG     G +  AR +F+    +++V+W  ++ 
Sbjct: 151 IEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMIS 210

Query: 187 GFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNS 246
           G+    ++  AR++F+ MP K+ ++W+ M+ GY  + G I+ A  LF+ MP+K + + N 
Sbjct: 211 GYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGY-TRSGRINEAAELFKAMPVKPVAACNG 269

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           MI G+   G++  A+ +F++M E++  +WS +I  Y + G   EAL LF  M  +GVRP+
Sbjct: 270 MIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPN 329

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
             S++  +S C  + +LD G+ +H  + RS   +D+ V + LI MY+KCG L   +R+F 
Sbjct: 330 FPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFD 389

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
             + K+++ +N +IAG   +GFGE+AL+ F +M + G   D++ F+GVL AC ++G   E
Sbjct: 390 RFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKE 449

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G  IF+SMK    ++ K EHY+C+VDLL RAG+L +A+N++E+MP++ +  +WG LL AC
Sbjct: 450 GLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSAC 509

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           R H+N+ LAE+  + L++L+    G Y+LLSN+YA    W+    +RK MR R + K  G
Sbjct: 510 RTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPG 569

Query: 547 RSVIEIDGNIKEFVSG 562
            S IE+D  +  F  G
Sbjct: 570 CSWIEVDNKVHMFTGG 585



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 169/335 (50%), Gaps = 42/335 (12%)

Query: 154 IGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWS 213
           I  +++ G +  AR++F+  + K + SWN ++ G+       +A+++FD+MP+++ ISW+
Sbjct: 23  ISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPERNTISWN 82

Query: 214 IMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
            ++ GY  K G IS AR +F+ MP ++++SW SM+ GY + G +  A+ LF  MPE+NV 
Sbjct: 83  GLVSGY-VKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVV 141

Query: 274 SWSIMIDGYAQHGNPKEALYLF---------------------------REMLCQGVRPD 306
           SW++M+ G  + G   EA  LF                           RE+  +  + +
Sbjct: 142 SWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRN 201

Query: 307 VISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           V++    IS  A    +D+  K   V   ++ +T      TA++  Y + G ++EA  +F
Sbjct: 202 VVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTW-----TAMLKGYTRSGRINEAAELF 256

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
            +M  K V + N MI G G+NG   +A   F QM+     KDD  +  ++      G   
Sbjct: 257 KAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKE----KDDGTWSALIKIYERKGFEL 312

Query: 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460
           E   +F  M+R  G+ P   ++  ++ +LS  G L
Sbjct: 313 EALALFSLMQRE-GVRP---NFPSIISILSVCGSL 343



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 157/329 (47%), Gaps = 31/329 (9%)

Query: 219 YRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM 278
           Y  + G I  AR +F+ +  K + SWN+++ GY        AQ+LF++MPERN  SW+ +
Sbjct: 25  YFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPERNTISWNGL 84

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338
           + GY ++G   EA  +F +M       +V+S    +    Q G +D  + +   M    +
Sbjct: 85  VSGYVKNGMISEARKVFDKM----PERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNV 140

Query: 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
               +  T ++   ++ G +DEARR+F  +  K+V++   MI GL   G   EA + F +
Sbjct: 141 ----VSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDE 196

Query: 399 METEGIPKDDLIFLGVLIACSHSGLATE-----GYRIFQSMKRHCGIEPKLEHYSCLVDL 453
           M     P+ +++    +I    SG A         ++F+ M     +      ++ ++  
Sbjct: 197 M-----PQRNVVAWTSMI----SGYAMNNKVDVARKLFEVMPDKNEVT-----WTAMLKG 242

Query: 454 LSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLY 513
            +R+G + +A  + ++MP+KP  A  G ++    N + V  A  V +   ++K  D G +
Sbjct: 243 YTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGE-VGKARWVFD---QMKEKDDGTW 298

Query: 514 VLLSNIYADAGMWEHALRIRKMMRKRKIK 542
             L  IY   G    AL +  +M++  ++
Sbjct: 299 SALIKIYERKGFELEALALFSLMQREGVR 327



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 10/149 (6%)

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
           RS  +    +    I  + + G +D AR IF  +  K V S+N ++AG   N    EA K
Sbjct: 9   RSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQK 68

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
            F +M      ++ + + G++     +G+ +E  ++F  M      E  +  ++ +V   
Sbjct: 69  LFDKMPE----RNTISWNGLVSGYVKNGMISEARKVFDKMP-----ERNVVSWTSMVRGY 119

Query: 455 SRAGELEQALNIVESMPMKPNLALWGTLL 483
            + G +++A  +   MP K N+  W  +L
Sbjct: 120 VQEGLIDEAELLFWRMPEK-NVVSWTVML 147


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 190/586 (32%), Positives = 317/586 (54%), Gaps = 24/586 (4%)

Query: 17  SLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAER---LFNQIY 73
           +L+ ++ T  H+ QI   L  + L  + F ++ LL       TL   Q +    LF+   
Sbjct: 18  TLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLL-----KRTLFFRQTKYSYLLFSHTQ 72

Query: 74  QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
            PN +++N++I G+  +    + L  ++++++ GL +  +T+P VLKAC        G +
Sbjct: 73  FPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGID 132

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           +H  VVK GF  DV  +  L+ +YS  G +  A  +F+    + +V+W  +  G+   G 
Sbjct: 133 LHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGR 192

Query: 194 MGKAREVFD---EMPQKDAISWSIMIDGYRKKKGDISSARILFEHMP----IKDLISWNS 246
             +A ++F    EM  K    + + +       GD+ S   + ++M      K+     +
Sbjct: 193 HREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTT 252

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           +++ YAK G +  A+ +F+ M E+++ +WS MI GYA +  PKE + LF +ML + ++PD
Sbjct: 253 LVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPD 312

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
             S++G +S+CA +GALDLG+W    + R     ++ +  ALIDMY KCG++     +F 
Sbjct: 313 QFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFK 372

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            M +K+++  N  I+GL  NG  + +   F Q E  GI  D   FLG+L  C H+GL  +
Sbjct: 373 EMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQD 432

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G R F ++     ++  +EHY C+VDL  RAG L+ A  ++  MPM+PN  +WG LL  C
Sbjct: 433 GLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGC 492

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           R  ++  LAE V++ L+ L+  + G YV LSNIY+  G W+ A  +R MM K+ +KK  G
Sbjct: 493 RLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPG 552

Query: 547 RSVIEIDGNIKEFVSGEIFDVQSEEL---------ELVIQSFVKTT 583
            S IE++G + EF++ +     S+++         E+ +  FV TT
Sbjct: 553 YSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTT 598


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 187/544 (34%), Positives = 311/544 (57%), Gaps = 56/544 (10%)

Query: 23  KTTTHILQILAQLTTNDLITEPFTLSQLLM--SLTSPNTLNMDQAERLFNQIYQPNTYMH 80
           +T   + QI A    +  + +    +++L   + +  +  ++D A ++FNQ+ Q N +  
Sbjct: 34  RTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSW 93

Query: 81  NTMIRGYTQSSNPQKALS---FYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGE 137
           NT+IRG+++S   +  ++   FY  M  + +  + +T+P VLKAC     + EG +IHG 
Sbjct: 94  NTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGL 153

Query: 138 VVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKA 197
            +K GF  D FV++ L+ MY                               V CG M  A
Sbjct: 154 ALKYGFGGDEFVMSNLVRMY-------------------------------VMCGFMKDA 182

Query: 198 REVF-DEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGD 256
           R +F   + +KD +   +M D  RK+ G+I               + WN MIDGY ++GD
Sbjct: 183 RVLFYKNIIEKDMV---VMTD-RRKRDGEI---------------VLWNVMIDGYMRLGD 223

Query: 257 LVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISA 316
             AA+ LF++M +R+V SW+ MI GY+ +G  K+A+ +FREM    +RP+ ++++  + A
Sbjct: 224 CKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPA 283

Query: 317 CAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISY 376
            +++G+L+LG+W+H++ + S I +D ++ +ALIDMY KCG +++A  +F  + ++NVI++
Sbjct: 284 ISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITW 343

Query: 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436
           + MI G  ++G   +A+ CF +M   G+   D+ ++ +L ACSH GL  EG R F  M  
Sbjct: 344 SAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVS 403

Query: 437 HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAE 496
             G+EP++EHY C+VDLL R+G L++A   + +MP+KP+  +W  LL ACR   NV + +
Sbjct: 404 VDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGK 463

Query: 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNI 556
            V   L+++   D G YV LSN+YA  G W     +R  M+++ I+K+ G S+I+IDG +
Sbjct: 464 RVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVL 523

Query: 557 KEFV 560
            EFV
Sbjct: 524 HEFV 527


>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 186/502 (37%), Positives = 296/502 (58%), Gaps = 20/502 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           MD+AE LFN++ + N    N M+ GY  + + +KA+ F+  M ++    D+ +   ++  
Sbjct: 168 MDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKR----DSASLRALVSG 223

Query: 122 CGVLMGLVEGTEI---HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE------- 171
                 LVE   I   +G  V  G L D +  N LI  Y + G    AR +F+       
Sbjct: 224 LIQNDKLVEAERILLQYGGNVGKGDLVDAY--NTLIAGYGQKGMAYEARKLFDRIPLCCD 281

Query: 172 -GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR 230
            G   ++++SWN ++  +V  G++  ARE+FD+M ++D  SW+ MI GY +   D+  A 
Sbjct: 282 CGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQIL-DMKEAS 340

Query: 231 ILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
            LF  MP  D +SWN MI G+++IG L  A  LF  +PE+++ SW+ MI GY ++ + K 
Sbjct: 341 NLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKG 400

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
           A+ +F +M  +G +PD  ++   +SACA +  L LG  IH  + ++ I  D+ +  +L+ 
Sbjct: 401 AMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTKAFIA-DLPINNSLVT 459

Query: 351 MYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           MY +CG++ EAR +F  M  +++VIS+N MI G   +GF  EAL+ F  M+   +    +
Sbjct: 460 MYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYI 519

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            F+ VL AC+H+GL  EG R F SM    GI+P++EHY+ LVD++ R G+LE+A++++ S
Sbjct: 520 TFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINS 579

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           MP +P+ A+WG LL AC+ H NV +A    E L++L+ +    YVLL N+YAD G W+ A
Sbjct: 580 MPCEPDKAVWGALLGACKVHNNVEMARAAAEALMKLQPESSAPYVLLHNMYADVGRWDDA 639

Query: 530 LRIRKMMRKRKIKKETGRSVIE 551
             +R MM K  ++K+ G S ++
Sbjct: 640 AEMRTMMEKNNVQKDAGYSRVD 661



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 190/386 (49%), Gaps = 59/386 (15%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           + + +N  I    + G +  AR +F+ +E  + ++WN ++  +V+  EM KAR++F+EMP
Sbjct: 56  EFYSLNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMP 115

Query: 206 QKDAISWSIMIDGYRKKKGD-ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
            +D +SW++M+ GY    G  +  AR +F+ MP  D +SWN+M+ GYAK G +  A++LF
Sbjct: 116 NRDIVSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGTMDKAEELF 175

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ----- 319
           NEMPERNV SW+ M+ GY  +G+ ++A+  F+ M     + D  S+   +S   Q     
Sbjct: 176 NEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLM----PKRDSASLRALVSGLIQNDKLV 231

Query: 320 ------------VGALDL-----------GKWIHVFMKR---SRITM---------DMIV 344
                       VG  DL           G+    +  R    RI +         ++I 
Sbjct: 232 EAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVIS 291

Query: 345 QTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGI 404
             ++I  Y++ G +  AR +F  M +++  S+N MI+G       +EA   F++M     
Sbjct: 292 WNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRM----- 346

Query: 405 PKDDLIFLGVLIA-CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
           P+ D +   ++I+  S  G     + +F+ +      E  L  ++ ++    +  + + A
Sbjct: 347 PEPDTLSWNMMISGFSEIGSLKLAHDLFKRIP-----EKSLVSWNSMISGYEKNEDYKGA 401

Query: 464 LNIVESMPM---KPNLALWGTLLLAC 486
           +NI   M +   KP+     ++L AC
Sbjct: 402 MNIFLQMQLEGKKPDRHTLSSILSAC 427



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 169/361 (46%), Gaps = 56/361 (15%)

Query: 29  LQILAQLTTNDLIT---EPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIR 85
           +QIL     ++L +   EP TLS  +M        ++  A  LF +I + +    N+MI 
Sbjct: 331 VQILDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMIS 390

Query: 86  GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC 145
           GY ++ + + A++ ++ M+ +G   D +T   +L AC  L+ LV GT+IH ++V   F+ 
Sbjct: 391 GYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIH-QLVTKAFIA 449

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEI-KDLVSWNLVLRGFVECGEMGKAREVFDEM 204
           D+ + N L+ MYS+CG +  AR VF+   + +D++SWN ++ G+   G   +A ++FD M
Sbjct: 450 DLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLM 509

Query: 205 PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
                            K+ ++  + I F            S+++  A  G +   ++ F
Sbjct: 510 -----------------KQCNVQPSYITFI-----------SVLNACAHAGLIEEGRREF 541

Query: 265 NEMPERN-----VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
           N M   +     V  ++ ++D   +HG  +EA+ L   M C+   PD  +V GA+    +
Sbjct: 542 NSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCE---PDK-AVWGALLGACK 597

Query: 320 VGALDLGKWIHVFMKRSRITMDMIVQTA-------LIDMYMKCGSLDEARRIFYSMTKKN 372
           V         +V M R+     M +Q         L +MY   G  D+A  +   M K N
Sbjct: 598 VHN-------NVEMARAAAEALMKLQPESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNN 650

Query: 373 V 373
           V
Sbjct: 651 V 651


>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
          Length = 577

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 191/573 (33%), Positives = 314/573 (54%), Gaps = 38/573 (6%)

Query: 6   AAKFSLKNP-LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQ 64
           +A  SL  P L  +++   T   +   LA +    L  +   ++Q + + TS   L  D 
Sbjct: 21  SASLSLAPPNLKKIIKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSFKRL--DL 78

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A     Q+ +PN +++N + +G+   S+P ++L  YV M R  +   +YTY  ++KA   
Sbjct: 79  AVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSF 138

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
                E  + H  + K GF   V +   LI  YS  G                       
Sbjct: 139 ASRFGESLQAH--IWKFGFGFHVKIQTTLIDFYSATG----------------------- 173

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
                    + +AR+VFDEMP++D I+W+ M+  YR+   D+ SA  L   M  K+  + 
Sbjct: 174 --------RIREARKVFDEMPERDDIAWTTMVSAYRRVL-DMDSANSLANQMSEKNEATS 224

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           N +I+GY  +G+L  A+ LFN+MP +++ SW+ MI GY+Q+   +EA+ +F +M+ +G+ 
Sbjct: 225 NCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGII 284

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           PD +++   ISACA +G L++GK +H++  ++   +D+ + +AL+DMY KCGSL+ A  +
Sbjct: 285 PDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLV 344

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F+++ KKN+  +N +I GL  +GF +EALK FA+ME E +  + + F+ V  AC+H+GL 
Sbjct: 345 FFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLV 404

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            EG RI++SM     I   +EHY  +V L S+AG + +AL ++ +M  +PN  +WG LL 
Sbjct: 405 DEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLD 464

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
            CR H+N+ +AE+    L+ L+  + G Y LL ++YA+   W     IR  MR+  I+K 
Sbjct: 465 GCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKI 524

Query: 545 -TGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
             G S I ID     F + +     S+E+ L++
Sbjct: 525 CPGTSSIRIDKRDHLFAAADKSHSASDEVCLLL 557


>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
 gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 184/545 (33%), Positives = 305/545 (55%), Gaps = 66/545 (12%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           +I AQL    L  +    S++L   TSP   +++ A  +F QI  PN ++ NT+IRG++Q
Sbjct: 14  KIHAQLIKTGLAKDTIAASRVLAFCTSPAG-DINYAYLVFTQIRNPNLFVWNTIIRGFSQ 72

Query: 90  SSNPQKALSFYVNM--KRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV 147
           SS P  A+S +++M            TYP V KA   L    EG ++HG V+K+G   D 
Sbjct: 73  SSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGLENDQ 132

Query: 148 FVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK 207
           F+ N ++ MY                               V CG +G+A+ +FD     
Sbjct: 133 FIQNTILNMY-------------------------------VNCGFLGEAQRIFDGAT-- 159

Query: 208 DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
                     G+                    D+++WN+MI G AK G++  +++LF++M
Sbjct: 160 ----------GF--------------------DVVTWNTMIIGLAKCGEIDKSRRLFDKM 189

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK 327
             RN  SW+ MI GY + G   EA+ LF  M  +G++P   +++  ++ACA +GAL  G+
Sbjct: 190 LLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGE 249

Query: 328 WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
           WIH ++ ++   ++ IV TA+IDMY KCGS+D+A ++F S  KK +  +N +I GL M+G
Sbjct: 250 WIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSG 309

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
            G EA++ F+++E+  +  D + F+GVL AC+H+G+       F  M     IEP ++HY
Sbjct: 310 RGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHY 369

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
           SC+VD+L RAG LE+A  +++SMP+ P+  +WG+LL +CR + N+ +A+   + + EL  
Sbjct: 370 SCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMAKQAAKRVNELDP 429

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDV 567
           ++   ++LLSN+YA    +E A+  R  ++++++ KE G S+IE++G + EFV+G     
Sbjct: 430 NESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPGCSLIEVNGEVHEFVAGGRLHP 489

Query: 568 QSEEL 572
           +S+++
Sbjct: 490 RSKDI 494


>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 192/587 (32%), Positives = 305/587 (51%), Gaps = 85/587 (14%)

Query: 40  LITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSF 99
           L+ +PF  S+L+       +  ++   ++   I  PN +  N  IRG+++S NP+ A+  
Sbjct: 6   LVLDPFASSRLIAFCALSESRYLNYCVKILKGIENPNAFSWNVTIRGFSESENPKDAVLA 65

Query: 100 YVNMKRKGLL---VDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGM 156
           Y  M R+G      D++TYP + K C  L     G  I G V K+       V N  I M
Sbjct: 66  YKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMILGHVFKLRLELVSHVHNASIHM 125

Query: 157 YSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMI 216
                                          F  CGEM  AR+VFDE P +D +SW+ +I
Sbjct: 126 -------------------------------FASCGEMENARKVFDESPVRDLVSWNCLI 154

Query: 217 DGYRKKK----------------------------------GDISSARILFEHMPIKDLI 242
           +GY+K                                    GD++  +  +E++    L 
Sbjct: 155 NGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLR 214

Query: 243 SW----NSMIDGYAKIGDLVAAQ-------------QLFNEMPERNVFSWSIMIDGYAQH 285
                 N+++D ++K GD+  A+             +LF++M E++V  W+ MI G  Q 
Sbjct: 215 MTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQA 274

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
              ++AL LF+EM      PD I+++  +SAC+Q+GALD+G WIH ++++  +++++ + 
Sbjct: 275 KRSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIHRYIEKHSLSLNVALG 334

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
           T+L+DMY KCG++ EA  +F+ +  +N ++Y  +I GL ++G    A+  F +M   GI 
Sbjct: 335 TSLVDMYAKCGNISEALCVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIA 394

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
            D++ F+G+L AC H G+   G   F  MK    + P+L+HYS +VDLL RAG LE+A  
Sbjct: 395 PDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADK 454

Query: 466 IVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM 525
           ++ESMPM+ + A+WG LL  CR H NV L E   + L+EL   D G+YVLL  +Y +A M
Sbjct: 455 LMESMPMEADAAVWGALLFGCRMHGNVKLGEKAAKKLLELDPSDSGIYVLLDGMYGEANM 514

Query: 526 WEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           WE A R R+MM +R ++K  G S IE++G + EF+  +    +SE++
Sbjct: 515 WEDAKRARRMMNERGVEKIPGCSSIEVNGIVSEFIVRDKSRPESEKI 561


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 180/549 (32%), Positives = 310/549 (56%), Gaps = 21/549 (3%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLF-NQIYQPNTYMHNTMIRGYT 88
           +I + +  N  +  P +++ L+   +  N +N   A  +F +  ++ N +  N +I G+ 
Sbjct: 58  EIHSYMLINGFLNSPLSITSLINMYSKCNQMNF--ALSIFSDPTHEINVFAFNAIISGFI 115

Query: 89  QSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF 148
            +  P++   FY  M+ +G++ D +T+P  +KAC   + ++E  +IHG + K G   DVF
Sbjct: 116 TNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKAC---LDVLEIKKIHGLLFKFGLELDVF 172

Query: 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKD 208
           + + L+  Y K G M  A+  FE   I+D+V WN ++ G+ + G+     E F  M  + 
Sbjct: 173 IGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDES 232

Query: 209 AISWSIMIDGYRKK---KGDISSARILFEHMPIK-----DLISWNSMIDGYAKIGDLVAA 260
            +     + G        GD+++ RI+     +K      +   NS+ID Y K   +  A
Sbjct: 233 VVPSRFTVTGVLSVFAVMGDLNNGRII-HGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDA 291

Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
            ++F  M E+++FSW+ ++  + Q G+    L L   ML  G++PD+++V   + AC+ +
Sbjct: 292 LEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHL 351

Query: 321 GALDLGKWIHVFM------KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
            AL  G+ IH +M      K  +   D++++ A+IDMY KCGS+ +A  +F  M+ K+V 
Sbjct: 352 AALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVA 411

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434
           S+N+MI G GM+G+G EAL+ F++M    +  D++ F+GVL ACSH+G  ++G      M
Sbjct: 412 SWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQM 471

Query: 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTL 494
           K    + P +EHY+C++D+L RAG+L++A  +  +MP++ N  +W  LL ACR H++  L
Sbjct: 472 KSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVL 531

Query: 495 AEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDG 554
           AEV  + + EL+ + CG YVL+SN+Y   G +E  L +R  MR++ ++K  G S IE+  
Sbjct: 532 AEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKN 591

Query: 555 NIKEFVSGE 563
            +  FVS +
Sbjct: 592 GVHVFVSAD 600



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 200/442 (45%), Gaps = 20/442 (4%)

Query: 95  KALSFYVNMKRKGLLVDNYTYPFVLKACGVLM-------GLVEGTEIHGEVVKMGFLCDV 147
           K    + N       + ++  P+ L  C   +        L +G EIH  ++  GFL   
Sbjct: 13  KKSPLFFNFSSISTAIQSFQQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSP 72

Query: 148 FVVNGLIGMYSKCGHMGCARSVF-EGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
             +  LI MYSKC  M  A S+F + +   ++ ++N ++ GF+  G   +  E + +M  
Sbjct: 73  LSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRN 132

Query: 207 KDAISWSIMIDGYRKKKGDISSAR----ILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQ 262
           +  I          K   D+   +    +LF+     D+   +++++ Y K G +  AQ 
Sbjct: 133 EGVIPDKFTFPCAIKACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQV 192

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
            F E+P R+V  W+ M++GYAQ G  +  L  FR M  + V P   +V G +S  A +G 
Sbjct: 193 AFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGD 252

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
           L+ G+ IH F  +      + V  +LIDMY KC  +++A  IF  M +K++ S+N +++ 
Sbjct: 253 LNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSV 312

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH-----SGLATEGYRIFQSMKRH 437
               G  +  L+   +M   GI  D +    VL ACSH      G    GY I   + + 
Sbjct: 313 HEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKD 372

Query: 438 CGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH--QNVTLA 495
                 +   + ++D+ ++ G +  A  + E M  K ++A W  +++    H   N  L 
Sbjct: 373 GKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNK-DVASWNIMIMGYGMHGYGNEALE 431

Query: 496 EVVVEGLVELKADDCGLYVLLS 517
                  V+LK D+     +LS
Sbjct: 432 MFSRMCEVQLKPDEVTFVGVLS 453


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 204/595 (34%), Positives = 309/595 (51%), Gaps = 73/595 (12%)

Query: 61  NMDQAERLFNQIYQP---NTYMHNTMIRGYTQSSNPQKALSFYVNM------KRKGLLVD 111
           +++ A  +F++I +    +    N+++  + + SNP+ AL  +  M      K      D
Sbjct: 199 SLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSD 258

Query: 112 NYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE 171
             +   +L AC  L  L +  EIH   ++ G   D FV N LI  Y+KCG M  A  VF 
Sbjct: 259 IISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFN 318

Query: 172 GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMI----------- 216
             E KD+VSWN ++ G+ + G  G A E+F+ M ++    D I+WS +I           
Sbjct: 319 VMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQE 378

Query: 217 ----------DG-----------------------------YRKKKGDISSARILFEHMP 237
                     DG                             Y  KK  +S          
Sbjct: 379 ALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGD 438

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMP--ERNVFSWSIMIDGYAQHGNPKEALYLF 295
            +DL+ +N++ID Y+K     AA+ +F+ +P  ERNV +W++MI GYAQ+G+  +AL +F
Sbjct: 439 GEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIF 498

Query: 296 REMLCQ--GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI--VQTALIDM 351
            EM+ +   V P+  ++   + ACA + AL +GK IH ++ R       +  V   LIDM
Sbjct: 499 SEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDM 558

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y KCG +D AR +F SM K+N +S+  M++G GM+G G+EAL  F +M+  G   DD+ F
Sbjct: 559 YSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISF 618

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           L +L ACSHSG+  +G   F  M+R   +    EHY+C++DLL+R G L++A   ++ MP
Sbjct: 619 LVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMP 678

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           M+P+  +W  LL ACR H NV LAE  +  LV +KA++ G Y L+SNIYA+A  W+   R
Sbjct: 679 MEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVAR 738

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586
           IR++M+K  IKK  G S ++       F  G+    +S  L   I S ++  I R
Sbjct: 739 IRQLMKKSGIKKRPGCSWVQGKKGTASFFVGD----RSHPLSPEIYSLLERLIGR 789



 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 161/529 (30%), Positives = 258/529 (48%), Gaps = 74/529 (13%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N ++R + +  +  +A+     M R G   D++T P+ LKACG L     G  +HG +  
Sbjct: 118 NLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLICC 177

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFE---GSEIKDLVSWNLVLRGFVECGEMGKA 197
            GF  +VFV N L+ MYS+CG +  A  VF+      I D++SWN ++   V+      A
Sbjct: 178 NGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTA 237

Query: 198 REVFDEM-------------------------------PQ--------------KDAISW 212
            E+F EM                               PQ               DA   
Sbjct: 238 LELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVC 297

Query: 213 SIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN- 271
           + +ID Y  K G ++ A  +F  M  KD++SWN+M+ GY + G+  AA +LF  M + N 
Sbjct: 298 NALIDTY-AKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENI 356

Query: 272 ---VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328
              V +WS +I GYAQ G  +EAL  F++M+  G  P+ ++++  +SACA +GAL  G  
Sbjct: 357 PLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGME 416

Query: 329 IHVF-MKRSRITM-----------DMIVQTALIDMYMKCGSLDEARRIFYSMTK--KNVI 374
           IH + +K+  +++           D++V  ALIDMY KC S   AR IF S+ +  +NV+
Sbjct: 417 IHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVV 476

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMETE--GIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
           ++ VMI G    G   +ALK F++M ++   +  +      +L+AC+H      G +I  
Sbjct: 477 TWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHA 536

Query: 433 SMKRHCGIEPKLEHYS-CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN 491
            + RH   EP +   + CL+D+ S+ G+++ A N+ +SMP K N   W +++     H  
Sbjct: 537 YVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMP-KRNEVSWTSMMSGYGMHGR 595

Query: 492 VTLAEVVVEGLVE--LKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
              A  + + + +     DD    VLL    + +GM +  L    +MR+
Sbjct: 596 GKEALDIFDKMQKAGFVPDDISFLVLLYAC-SHSGMVDQGLNYFDIMRR 643



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 153/335 (45%), Gaps = 25/335 (7%)

Query: 152 GLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAIS 211
           G++  Y  CG    A SV E       V WNL++R  ++ G + +A  V   M +     
Sbjct: 88  GVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKP 147

Query: 212 WSIMIDGYRKKKGDISS---ARIL--------FEHMPIKDLISWNSMIDGYAKIGDLVAA 260
               +    K  G++ S    R L        FE     ++   N+++  Y++ G L  A
Sbjct: 148 DHFTLPYALKACGELPSYCCGRALHGLICCNGFE----SNVFVCNALVAMYSRCGSLEDA 203

Query: 261 QQLFNEMPER---NVFSWSIMIDGYAQHGNPKEALYLFREML------CQGVRPDVISVM 311
             +F+E+  +   +V SW+ ++  + +  NP+ AL LF EM           R D+IS++
Sbjct: 204 SLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIV 263

Query: 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
             + ACA + AL   K IH +  R+    D  V  ALID Y KCGS+++A ++F  M  K
Sbjct: 264 NILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFK 323

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           +V+S+N M+ G   +G    A + F  M  E IP D + +  V+   +  G + E    F
Sbjct: 324 DVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAF 383

Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466
           Q M    G EP       L+   +  G L Q + I
Sbjct: 384 QQMILD-GSEPNSVTIISLLSACASLGALSQGMEI 417



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 112/246 (45%), Gaps = 11/246 (4%)

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           ++  Y   G    A  +   +       W++++  + + G+   A+ +   ML  G +PD
Sbjct: 89  VVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPD 148

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
             ++  A+ AC ++ +   G+ +H  +  +    ++ V  AL+ MY +CGSL++A  +F 
Sbjct: 149 HFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFD 208

Query: 367 SMTKK---NVISYNVMIAGLGMNGFGEEALKCFAQM-----ETEGIPKDDLI-FLGVLIA 417
            +T+K   +VIS+N ++A          AL+ F++M     E     + D+I  + +L A
Sbjct: 209 EITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPA 268

Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
           C+ S  A    +   S     G        + L+D  ++ G +  A+ +   M  K ++ 
Sbjct: 269 CA-SLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFK-DVV 326

Query: 478 LWGTLL 483
            W  ++
Sbjct: 327 SWNAMV 332


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 187/563 (33%), Positives = 311/563 (55%), Gaps = 21/563 (3%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           N L+  L +S +   +  +  ++   D      ++S  +M  +  N   +  A   F+  
Sbjct: 173 NTLLHALGVSSSLADVRALFDEMPVKD------SVSYNVMISSHANHGLVSLARHYFDLA 226

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
            + +    N M+  Y ++   Q+A            L D+ T    +    ++ G V+ +
Sbjct: 227 PEKDAVSWNGMLAAYVRNGRIQEARE----------LFDSRTEWDAISWNALMAGYVQRS 276

Query: 133 EIHGEVVKMGFLC---DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
           +I  E  KM       DV   N ++  Y++ G M  AR +F+ + I+D+ +W  ++ G+ 
Sbjct: 277 QIE-EAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYA 335

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMID 249
           + G + +A+ VFD MP K+A+SW+ M+  Y +++  +  A+ LF+ MP +++ SWN+M+ 
Sbjct: 336 QNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRM-MEEAKELFDAMPCRNVASWNTMLT 394

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
           GYA+ G L  A+ +F  MP+++  SW+ M+  Y+Q G  +E L LF+EM   G   +  +
Sbjct: 395 GYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSA 454

Query: 310 VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369
               +S CA + AL+ G  +H  + ++   +   V  AL+ MY KCGS++EA   F  M 
Sbjct: 455 FACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEME 514

Query: 370 KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR 429
           +++V+S+N MIAG   +GFG+EAL+ F  M       DD+  +GVL ACSHSGL  +G  
Sbjct: 515 ERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGIS 574

Query: 430 IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
            F SM R  G+  K EHY+C++DLL RAG L++A+N+++ MP +P+  +WG LL A R H
Sbjct: 575 YFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIH 634

Query: 490 QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSV 549
           +N  L     E + EL+ ++ G+YVLLSNIYA +G W    ++R +M +R +KK  G S 
Sbjct: 635 RNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSW 694

Query: 550 IEIDGNIKEFVSGEIFDVQSEEL 572
           IE+   +  F  G+    + E++
Sbjct: 695 IEVQNKVHTFSVGDSVHPEREDI 717



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 136/485 (28%), Positives = 223/485 (45%), Gaps = 63/485 (12%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           AERLF  + + +T  +NTM+ GY  +    +ALSF+ ++ R     D+++Y  +L A GV
Sbjct: 126 AERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRP----DSFSYNTLLHALGV 181

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
              L +                                    R++F+   +KD VS+N++
Sbjct: 182 SSSLAD-----------------------------------VRALFDEMPVKDSVSYNVM 206

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
           +      G +  AR  FD  P+KDA+SW+ M+  Y  + G I  AR LF+     D ISW
Sbjct: 207 ISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAY-VRNGRIQEARELFDSRTEWDAISW 265

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           N+++ GY +   +  AQ++FN+MP+R+V SW+ M+ GYA+ G+  EA  LF       V 
Sbjct: 266 NALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLF------DVA 319

Query: 305 P--DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           P  DV +    +S  AQ G L+  K +   M       + +   A++  Y++   ++EA+
Sbjct: 320 PIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMP----DKNAVSWNAMMAAYVQRRMMEEAK 375

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
            +F +M  +NV S+N M+ G    G  +EA   F  M      KD + +  +L A S  G
Sbjct: 376 ELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQ----KDAVSWAAMLAAYSQIG 431

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW--- 479
            + E  ++F+ M R CG       ++C++   +    LE  + +  S  +K    +    
Sbjct: 432 FSEETLQLFKEMGR-CGEWVNRSAFACVLSTCADIAALECGMQL-HSRLIKAGYGVGCFV 489

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
           G  LLA   +      E       E++  D   +  +   YA  G  + AL +   MRK 
Sbjct: 490 GNALLAM--YFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKT 547

Query: 540 KIKKE 544
             K +
Sbjct: 548 STKPD 552



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 147/318 (46%), Gaps = 19/318 (5%)

Query: 166 ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGD 225
           A +   G    +++  N  +   +  G +  A  +F  MP++   +++ M+ GY    G 
Sbjct: 95  ADACITGKPDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGY-AANGR 153

Query: 226 ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
           +  A   F  +P  D  S+N+++        L   + LF+EMP ++  S+++MI  +A H
Sbjct: 154 LPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANH 213

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
           G     + L R         D +S  G ++A  + G +   + +      SR   D I  
Sbjct: 214 G----LVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELF----DSRTEWDAISW 265

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
            AL+  Y++   ++EA+++F  M +++V+S+N M++G    G   EA + F         
Sbjct: 266 NALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPI---- 321

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
           +D   +  ++   + +G+  E  R+F +M     +      ++ ++    +   +E+A  
Sbjct: 322 RDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVS-----WNAMMAAYVQRRMMEEAKE 376

Query: 466 IVESMPMKPNLALWGTLL 483
           + ++MP + N+A W T+L
Sbjct: 377 LFDAMPCR-NVASWNTML 393



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 143/321 (44%), Gaps = 27/321 (8%)

Query: 222 KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           + G +  A  LF  MP +   ++N+M+ GYA  G L  A   F  +P  + FS++ ++  
Sbjct: 119 RAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHA 178

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
                +  +   LF EM  +    D +S    IS+ A  G + L +  H F        D
Sbjct: 179 LGVSSSLADVRALFDEMPVK----DSVSYNVMISSHANHGLVSLAR--HYFDLAP--EKD 230

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
            +    ++  Y++ G + EAR +F S T+ + IS+N ++AG       EEA K F +M  
Sbjct: 231 AVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKM-- 288

Query: 402 EGIPKDDLIFLGVLIAC-SHSGLATEGYRIFQSMKRHCGIEPKLE--HYSCLVDLLSRAG 458
              P+ D++    +++  +  G   E  R+F        + P  +   ++ +V   ++ G
Sbjct: 289 ---PQRDVVSWNTMVSGYARRGDMAEARRLFD-------VAPIRDVFTWTAIVSGYAQNG 338

Query: 459 ELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSN 518
            LE+A  + ++MP K N   W  ++ A   +    + E   E    +   +   +  +  
Sbjct: 339 MLEEAKRVFDAMPDK-NAVSWNAMMAA---YVQRRMMEEAKELFDAMPCRNVASWNTMLT 394

Query: 519 IYADAGMWEHALRIRKMMRKR 539
            YA AGM + A  I  MM ++
Sbjct: 395 GYAQAGMLDEARAIFGMMPQK 415


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 185/505 (36%), Positives = 275/505 (54%), Gaps = 72/505 (14%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG-----VLMGLVEGTEIH 135
           N +I G+ +     ++   +V+M R G      TY  VL ACG     VL+G+    ++H
Sbjct: 91  NALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGM----QVH 146

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
           G VV  G L D+ V N L+ MY+                               EC +MG
Sbjct: 147 GRVVGSGVLPDLRVENALVDMYA-------------------------------ECADMG 175

Query: 196 KAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIG 255
            A +VFD                                 M ++ ++SW S++ G A++G
Sbjct: 176 SAWKVFDG--------------------------------MQVRSVVSWTSLLSGLARLG 203

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
            +  A+ LF+ MPER+  SW+ MIDGY      +EAL +FREM    V  D  +++  I+
Sbjct: 204 QVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVIT 263

Query: 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS 375
           ACAQ+GAL++G+W+ V+M R  I MD  V  ALIDMY KCGS++ A  +F  M  ++  +
Sbjct: 264 ACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFT 323

Query: 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMK 435
           +  +I GL +NG+ EEA++ F +M       D++ F+GVL AC+H+GL  +G   F SM 
Sbjct: 324 WTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMI 383

Query: 436 RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLA 495
               I P + HY C++DLL RAG++ +AL+ ++ MPM PN  +WGTLL ACR H N  + 
Sbjct: 384 EAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIG 443

Query: 496 EVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGN 555
           E+V E L+EL  ++  +Y+LLSNIYA    WE   R+R  + ++ IKKE G S+IE+DG 
Sbjct: 444 ELVAERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGI 503

Query: 556 IKEFVSGEIFDVQSEELELVIQSFV 580
           I EFV+G+     S+E+   ++S +
Sbjct: 504 IHEFVAGDQSHPMSKEIYSKLESII 528



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 103/238 (43%), Gaps = 9/238 (3%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            +D+A  LF+++ + +T     MI GY  ++  ++AL  +  M+   +  D +T   V+ 
Sbjct: 204 QVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVIT 263

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L  G  +   + + G   D FV N LI MYSKCG +  A  VF+G   +D  +
Sbjct: 264 ACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFT 323

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR---KKKGDISSARILFEHM- 236
           W  ++ G    G   +A E+F  M +       +   G        G +   R  F  M 
Sbjct: 324 WTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMI 383

Query: 237 ----PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPK 289
                  +++ +  +ID   + G +  A    ++MP   N   W  ++     HGN +
Sbjct: 384 EAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSE 441



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 88/205 (42%), Gaps = 19/205 (9%)

Query: 289 KEALYLFREMLCQGVRPDVISVMGAISACAQV----GALDLGKWIHVFMKRSRITMDMIV 344
           ++A+  +  ML +G RPD  +    + A A+     G+    + +H  + R  +  +  V
Sbjct: 1   EDAVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHV 60

Query: 345 QTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGI 404
            ++L+  Y   G    AR +         +++N +I+G    G   E+   F  M   G 
Sbjct: 61  ASSLVAAYTAGGDGAAARALVGECDTP--VAWNALISGHNRGGRFGESCGSFVDMARAGA 118

Query: 405 PKDDLIFLGVLIACSHSGLATEGYR-IFQSMKRH-----CGIEPKLEHYSCLVDLLSRAG 458
               + ++ VL AC       +G R +   M+ H      G+ P L   + LVD+ +   
Sbjct: 119 APTPVTYVSVLSACG------KGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECA 172

Query: 459 ELEQALNIVESMPMKPNLALWGTLL 483
           ++  A  + + M ++ ++  W +LL
Sbjct: 173 DMGSAWKVFDGMQVR-SVVSWTSLL 196


>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 166/436 (38%), Positives = 272/436 (62%), Gaps = 9/436 (2%)

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
           + IH   +K+GF   +FV N LI MY+ CG +G A+ +F+G   +DLVSWN ++ G+ + 
Sbjct: 44  SSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQY 103

Query: 192 GEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK----DLIS 243
            +  +   +FD M     + DA++   +I       GD   A  + +++       D+  
Sbjct: 104 NKYKEVLRLFDAMTAANIKADAVTMVKIILAC-SHLGDWEFADSMVKYIKENNLEIDVYL 162

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
            N++ID Y ++G+L AA++LF+ MP+R+V SW+ MI GY+Q     +A+ LF+EM+   V
Sbjct: 163 GNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKV 222

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
           +PD ++V   +SACA +G LD+G  +H +++R  +  D+ V  +LIDMY KCG +++A  
Sbjct: 223 KPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALE 282

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           +F+ M  K+ +S+  +I+GL +NGF   AL  F+QM  EG+      F+G+L+AC+H+GL
Sbjct: 283 VFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGL 342

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             +G   F+SM+   G+ P ++HY C+VDLLSR+G +++A   ++ MP+ P++ +W  LL
Sbjct: 343 VNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILL 402

Query: 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
            AC+ H NV LAE+  + L+EL   D G YVLLSN YA    W+ A+++R++M    ++K
Sbjct: 403 SACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQK 462

Query: 544 ETGRSVIEIDGNIKEF 559
            +G S IE+DG +  +
Sbjct: 463 PSGSSSIEVDGMVSNY 478



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 165/334 (49%), Gaps = 13/334 (3%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A+++F+ +   +    NT+I GY+Q +  ++ L  +  M    +  D  T   ++ AC  
Sbjct: 78  AQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSH 137

Query: 125 LMGLVEGTEIHGEVVKMGFL-CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
           L G  E  +   + +K   L  DV++ N LI MY + G++  AR +F+    +D++SW  
Sbjct: 138 L-GDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTS 196

Query: 184 VLRGFVECGEMGKAREVFDEM------PQKDAISWSIMIDGYRKKKGDISSA--RILFEH 235
           ++ G+ +  +   A ++F EM      P K  ++ S++       K D+  A    +  H
Sbjct: 197 MITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVA-SVLSACAHLGKLDVGWAVHHYIRRH 255

Query: 236 MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
               D+   NS+ID Y K G +  A ++F+ M +++  SW+ +I G A +G    AL LF
Sbjct: 256 GVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLF 315

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMK 354
            +ML +GV+P   + +G + ACA  G ++ G ++         +   M     ++D+  +
Sbjct: 316 SQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSR 375

Query: 355 CGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG 387
            G++D+A      M    +V+ + ++++   ++G
Sbjct: 376 SGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHG 409



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 104/236 (44%), Gaps = 9/236 (3%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N+  A +LF+ + + +     +MI GY+Q+S    A+  +  M    +  D  T   VL 
Sbjct: 175 NLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLS 234

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L  G  +H  + + G   D++V N LI MY KCG +  A  VF   + KD VS
Sbjct: 235 ACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVS 294

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR---KKKGDISSARILFEHMP 237
           W  V+ G    G    A ++F +M ++          G        G ++     FE M 
Sbjct: 295 WTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESME 354

Query: 238 -----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
                +  +  +  ++D  ++ G++  A +   +MP   +V  W I++     HGN
Sbjct: 355 SVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGN 410



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 2/170 (1%)

Query: 314 ISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNV 373
           ++    + A  +   IHV   +      + V  ALI MY  CG L  A+++F  M  +++
Sbjct: 31  VALTTNINASTISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDL 90

Query: 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433
           +S+N +I G       +E L+ F  M    I  D +  + +++ACSH G       + + 
Sbjct: 91  VSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKY 150

Query: 434 MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
           +K +  +E  +   + L+D+  R G L  A  + ++MP K ++  W +++
Sbjct: 151 IKEN-NLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMP-KRDVISWTSMI 198


>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
          Length = 577

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 193/573 (33%), Positives = 314/573 (54%), Gaps = 38/573 (6%)

Query: 6   AAKFSLKNP-LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQ 64
           +A  SL  P L  +++   T   +   LA +    L  +   ++Q + + TS   L  D 
Sbjct: 21  SASLSLAPPNLKKIIKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSFKCL--DL 78

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A     Q+ +PN +++N + +G+   S+P ++L  YV M R  +   +YTY  ++KA   
Sbjct: 79  AVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSF 138

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
                E  + H  + K GF   V +   LI  YS  G                       
Sbjct: 139 ASRFGESLQAH--IWKFGFGFHVKIQTTLIDFYSATG----------------------- 173

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
             G  E      AR+VFDEMP++D I+W+ M+  YR+   D+ SA  L   M  K+  + 
Sbjct: 174 --GIRE------ARKVFDEMPERDDIAWTTMVSAYRRVL-DMDSANSLANQMSEKNEATS 224

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           N +I+GY  +G+L  A+ LFN+MP +++ SW+ MI GY+Q+   +EA+ +F +M+ +G+ 
Sbjct: 225 NCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGII 284

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           PD +++   ISACA +G L++GK +H++  ++   +D+ + +AL+DMY KCGSL+ A  +
Sbjct: 285 PDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLV 344

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F+++ KKN+  +N +I GL  +GF +EALK FA+ME E +  + + F+ V  AC+H+GL 
Sbjct: 345 FFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLV 404

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            EG RI++SM     I   +EHY  +V L S+AG + +AL ++ +M  +PN  +WG LL 
Sbjct: 405 DEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLD 464

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
            CR H+N+ +AE+    L+ L+  + G Y LL ++YA+   W     IR  MR+  I+K 
Sbjct: 465 GCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKI 524

Query: 545 -TGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
             G S I ID     F + +     S+E+ L++
Sbjct: 525 CPGTSSIRIDKRDHLFAAADKSHSASDEVCLLL 557


>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20540-like [Vitis vinifera]
          Length = 515

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 173/506 (34%), Positives = 277/506 (54%), Gaps = 68/506 (13%)

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM-----KRKGLLVDNYTYPF 117
           + A  LF ++  PN +++N MIR Y  +     A++ +  M            D +T+PF
Sbjct: 37  EYANLLFKRVADPNAFLYNAMIRAYKHNKVYILAITVHKQMLGHSHGENPXFPDKFTFPF 96

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           V+K C  LM    G ++HG   K G   +  + N L+ MY                    
Sbjct: 97  VVKXCAGLMCYNLGKQVHGHAFKFGPKSNTVIENSLVEMY-------------------- 136

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMP 237
                      V+C  +  A  VF+EM ++                              
Sbjct: 137 -----------VKCDSLDDAHRVFEEMTER------------------------------ 155

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
             D +SWN++I G+ ++G +  A+ +F E+ ++ +FSW+ ++ GYA+ G    AL  FR 
Sbjct: 156 --DAVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVALEFFRR 213

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
           M    +  D IS++  + ACAQ+GAL+LGKWIH++  ++    D+ V  ALI++Y K GS
Sbjct: 214 MQMVDIELDEISLVSVLPACAQLGALELGKWIHIYADKAGFLRDICVCNALIEVYAKRGS 273

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
           +DE RR+F+ M +++VIS++ MI GL  +G   EA++ F +M+   +  + + F+G+L A
Sbjct: 274 MDEGRRLFHKMNERDVISWSTMIVGLANHGRAREAIELFQEMQKAKVEPNIITFVGLLSA 333

Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
           C+H+GL  EG   F+SM+R   IEP +EHY CLV+LL  +G L+QAL +++ MPMKP+  
Sbjct: 334 CAHAGLLNEGLGYFESMERDDNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSD 393

Query: 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537
           +WG L  +CR+H N+ +  + +E L+EL+ DD G Y+ LSN+YAD G W+   R+RK+M 
Sbjct: 394 IWGLLSSSCRSHGNLEIVAIAMEHLLELEPDDTGNYITLSNLYADLGKWDGVSRMRKLMS 453

Query: 538 KRKIKKETGRSVIEIDGNIKEFVSGE 563
            + + K  G S IE+D  ++E+ SG+
Sbjct: 454 SKYMNKTPGCSSIEVDNMVQEYASGD 479



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 125/279 (44%), Gaps = 38/279 (13%)

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG---- 302
           M+D     G+   A  LF  + + N F ++ MI  Y  +     A+ + ++ML       
Sbjct: 26  MVDMCNHHGETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYILAITVHKQMLGHSHGEN 85

Query: 303 -VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
              PD  +    +  CA +   +LGK +H    +     + +++ +L++MY+KC SLD+A
Sbjct: 86  PXFPDKFTFPFVVKXCAGLMCYNLGKQVHGHAFKFGPKSNTVIENSLVEMYVKCDSLDDA 145

Query: 362 RRIFYSMTKKNVISYNVMIAG---LG-----------------------MNGFGE----- 390
            R+F  MT+++ +S+N +I+G   LG                       ++G+       
Sbjct: 146 HRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHA 205

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
            AL+ F +M+   I  D++  + VL AC+  G A E  +         G    +   + L
Sbjct: 206 VALEFFRRMQMVDIELDEISLVSVLPACAQLG-ALELGKWIHIYADKAGFLRDICVCNAL 264

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
           +++ ++ G +++   +   M  +  ++ W T+++   NH
Sbjct: 265 IEVYAKRGSMDEGRRLFHKMNERDVIS-WSTMIVGLANH 302



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 120/277 (43%), Gaps = 17/277 (6%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           M +A  +F ++     +    ++ GY +      AL F+  M+   + +D  +   VL A
Sbjct: 173 MRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMVDIELDEISLVSVLPA 232

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G  IH    K GFL D+ V N LI +Y+K G M   R +F     +D++SW
Sbjct: 233 CAQLGALELGKWIHIYADKAGFLRDICVCNALIEVYAKRGSMDEGRRLFHKMNERDVISW 292

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIM----IDGYRKKKGDISSARILFEHMP 237
           + ++ G    G   +A E+F EM QK  +  +I+    +       G ++     FE M 
Sbjct: 293 STMIVGLANHGRAREAIELFQEM-QKAKVEPNIITFVGLLSACAHAGLLNEGLGYFESME 351

Query: 238 IKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQHGNPKEA 291
             D I      +  +++     G L  A +L  +MP + +   W ++      HGN  E 
Sbjct: 352 RDDNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSDIWGLLSSSCRSHGNL-EI 410

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328
           + +  E L + + PD       +S        DLGKW
Sbjct: 411 VAIAMEHLLE-LEPDDTGNYITLSNLYA----DLGKW 442


>gi|357118276|ref|XP_003560882.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Brachypodium distachyon]
          Length = 508

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 187/530 (35%), Positives = 291/530 (54%), Gaps = 32/530 (6%)

Query: 22  SKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHN 81
           ++    + QI   L    + +    L +LL++  +     MD A ++F+ I  P+ +MHN
Sbjct: 7   ARNPRSLKQIHGNLVVKGITSRLQPLRELLLACVASFNGGMDYARKVFDGISHPDLFMHN 66

Query: 82  TMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKM 141
            M+RGY  S+ P  A   Y  ++   L  D++T+ ++L+AC  L G   G ++HG VVK+
Sbjct: 67  VMVRGYAHSAAPAAAFVLYRRIEAARLKPDSFTFCYLLRACAGLPGSCAGYQVHGAVVKL 126

Query: 142 GFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVF 201
           G+  D FV N LI M++KCG +              LV+  L+                 
Sbjct: 127 GYFKDAFVRNALINMHAKCGDL--------------LVAGTLL----------------- 155

Query: 202 DEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQ 261
           DE  ++D ++ S +I G+   KG++  AR LF+    KDL+ WN M+  YAK G++  A+
Sbjct: 156 DEAGERDVVARSAVIAGH-AAKGELDIARQLFDECQHKDLVCWNVMVAAYAKYGEMEKAR 214

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
            L +  PE++V SW+ +I GY   G  KEAL +  EM C G+ PD  +++  +S CA +G
Sbjct: 215 GLLDRAPEKDVVSWNTIITGYTAKGLLKEALEVLDEMRCVGLMPDEATIVSLLSCCANLG 274

Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
           +L  G+ IH      R  + ++   AL+ MY KCG +  A  +F  M +++V ++N +I 
Sbjct: 275 SLGTGRMIHSLHLEGRPCISILPGNALVSMYAKCGDVQAAMEVFSRMKERDVWTWNSIIG 334

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
           GL  +G  E++++ F +M  EG+  +++ FL VL ACSH+GL  +G R F  M     IE
Sbjct: 335 GLAFHGQAEQSVQFFNKMLDEGLCPNEISFLCVLGACSHAGLVEDGQRYFSLMINRYRIE 394

Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEG 501
           P   HYSC+VD+L R+G L++A  IV SM  +P + +W TLL ACR H +V L ++  E 
Sbjct: 395 PNARHYSCIVDMLGRSGLLDEAFAIVSSMRCEPAVVIWRTLLGACRIHGDVALGKLARER 454

Query: 502 LVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
           L+++  D  G YVLLS IYA    W     +R  M +R I+K  G + +E
Sbjct: 455 LLKMNEDASGDYVLLSGIYASCDEWFGVETVRGSMDERGIRKVAGYAQVE 504


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 187/567 (32%), Positives = 305/567 (53%), Gaps = 39/567 (6%)

Query: 41  ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFY 100
           I EP    +  M      T  +D A  LF+ + + +    N M+   +QS   ++AL   
Sbjct: 219 IKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMV 278

Query: 101 VNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC 160
           V+M+ KG+ +D+ TY   L AC  L  L  G ++H +V++     D +V + L+ +Y+K 
Sbjct: 279 VDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKS 338

Query: 161 GHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMI 216
           G    A+ VF     ++ V+W +++ GF++ G   ++ E+F++M  +    D  + + +I
Sbjct: 339 GCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLI 398

Query: 217 DG----------------------------------YRKKKGDISSARILFEHMPIKDLI 242
            G                                     K  ++ SA  +F  M  KD++
Sbjct: 399 SGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIV 458

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
           SW SMI  Y+++G++  A++ F+ M E+NV +W+ M+  Y QHG  ++ L +++ ML + 
Sbjct: 459 SWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEE 518

Query: 303 -VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
            VRPD ++ +     CA +GA  LG  I     +  + +D  V  A+I MY KCG + EA
Sbjct: 519 YVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEA 578

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
           R++F  +  K+++S+N MI G   +G G++A++ F  +   G   D + ++ VL  CSHS
Sbjct: 579 RKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHS 638

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           GL  EG   F  MKR   I P LEH+SC+VDLL RAG L +A ++++ MPMKP   +WG 
Sbjct: 639 GLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGA 698

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           LL AC+ H N  LAE+  + + EL + D G Y+L++ IYADAG  + + +IRK+MR + I
Sbjct: 699 LLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGI 758

Query: 542 KKETGRSVIEIDGNIKEFVSGEIFDVQ 568
           KK  G S +E+D  +  F + ++   Q
Sbjct: 759 KKNPGYSWMEVDNKVHVFKADDVSHPQ 785



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 183/382 (47%), Gaps = 42/382 (10%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           Q+ AQ+  N    +P+  S L+            +A+ +FN ++  N      +I G+ Q
Sbjct: 311 QLHAQVIRNLPHIDPYVASALVELYAKSGCFK--EAKGVFNSLHDRNNVAWTVLISGFLQ 368

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
                +++  +  M+ + + +D +    ++  C   M L  G ++H   +K G +  V V
Sbjct: 369 YGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVV 428

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA 209
            N LI MY+KC ++  A ++F     KD+VSW  ++  + + G + KARE FD M +K+ 
Sbjct: 429 SNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNV 488

Query: 210 ISWSIMIDGYRKKKGDISSAR----ILFEHMPIKDLISW--------------------- 244
           I+W+ M+  Y +   +    R    +L E     D +++                     
Sbjct: 489 ITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIG 548

Query: 245 --------------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
                         N++I  Y+K G ++ A+++F+ +  +++ SW+ MI GY+QHG  K+
Sbjct: 549 RTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQ 608

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR-ITMDMIVQTALI 349
           A+ +F ++L +G +PD IS +  +S C+  G +  GK+    MKR+  I+  +   + ++
Sbjct: 609 AIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMV 668

Query: 350 DMYMKCGSLDEARRIFYSMTKK 371
           D+  + G L EA+ +   M  K
Sbjct: 669 DLLGRAGHLTEAKDLIDDMPMK 690



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/453 (24%), Positives = 197/453 (43%), Gaps = 56/453 (12%)

Query: 50  LLMSLTSPNTLN-------------MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKA 96
           LLM +  PN +              +  A  LF ++   +    NT++ GY QS     +
Sbjct: 82  LLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVS 141

Query: 97  LSFYVNMKRKGLLVDN-YTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIG 155
           L  +++M R G    N +T    +K+CG L       ++   V K     D  V   L+ 
Sbjct: 142 LETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVD 201

Query: 156 MYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIM 215
           M+ +CG +  A  +F   +   +   N +L G+V+   +  A E+FD MP++D +SW++M
Sbjct: 202 MFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMM 261

Query: 216 ID---------------------GYRKKKGDISS-----ARI------------LFEHMP 237
           +                      G R      +S     AR+            +  ++P
Sbjct: 262 VSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLP 321

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
             D    +++++ YAK G    A+ +FN + +RN  +W+++I G+ Q+G   E++ LF +
Sbjct: 322 HIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQ 381

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
           M  + +  D  ++   IS C     L LG+ +H    +S     ++V  +LI MY KC +
Sbjct: 382 MRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDN 441

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
           L  A  IF  M +K+++S+  MI      G   +A + F  M  + +    + +  +L A
Sbjct: 442 LQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNV----ITWNAMLGA 497

Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
               G   +G R+++ M     + P    Y  L
Sbjct: 498 YIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTL 530



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 120/496 (24%), Positives = 207/496 (41%), Gaps = 80/496 (16%)

Query: 114 TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCAR------ 167
            +   L++CG    L     +HG +V +G    VF+ N L+  Y  CG +  AR      
Sbjct: 26  AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMD 85

Query: 168 --------------------------SVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVF 201
                                      +F     +D+ SWN ++ G+ +  +   + E F
Sbjct: 86  IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETF 145

Query: 202 -------DEMPQK----------DAISWS-------IMIDGYRKKK-------------- 223
                  D  P             A+ W         M+  +  +               
Sbjct: 146 LSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVR 205

Query: 224 -GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
            G +  A  LF  +    +   NSM+ GY K   +  A +LF+ MPER+V SW++M+   
Sbjct: 206 CGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSAL 265

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
           +Q G  +EAL +  +M  +GVR D  +   +++ACA++ +L  GK +H  + R+   +D 
Sbjct: 266 SQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDP 325

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
            V +AL+++Y K G   EA+ +F S+  +N +++ V+I+G    G   E+++ F QM  E
Sbjct: 326 YVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAE 385

Query: 403 GIPKDDLIFLGVLIA--CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460
            +  D    L  LI+  CS   L     R   S+    G    +   + L+ + ++   L
Sbjct: 386 LMTLDQFA-LATLISGCCSRMDLCLG--RQLHSLCLKSGQIQAVVVSNSLISMYAKCDNL 442

Query: 461 EQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520
           + A  I   M  K ++  W +++ A     NV  A    +G+ E    +   +  +   Y
Sbjct: 443 QSAEAIFRFMNEK-DIVSWTSMITAYSQVGNVAKAREFFDGMSE---KNVITWNAMLGAY 498

Query: 521 ADAGMWEHALRIRKMM 536
              G  E  LR+ K+M
Sbjct: 499 IQHGAEEDGLRMYKVM 514


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 185/526 (35%), Positives = 295/526 (56%), Gaps = 7/526 (1%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ A  +F+++ + +    NTMI GY Q+   + AL   + M  +G   D+ T   +L A
Sbjct: 81  INDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPA 140

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
                 L  G  +HG V++ GF   V V   L+ MYSKCG +  AR +F+G + + +VSW
Sbjct: 141 VADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSW 200

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS-ARILFEHMPI-- 238
           N ++ G+V+ G+   A  +F +M  +     ++ + G      D+    R  F H  +  
Sbjct: 201 NSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQ 260

Query: 239 ----KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
                D+   NS+I  Y+K   +  A  +F  +  + + SW+ MI GYAQ+G   EAL  
Sbjct: 261 LKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNA 320

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           F EM  + ++PD  +++  I A A++      KWIH  + R  +  ++ V TAL+DMY K
Sbjct: 321 FCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAK 380

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG++  AR++F  M  ++VI++N MI G G +G G+ +++ F +M+   I  +D+ FL  
Sbjct: 381 CGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCA 440

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L ACSHSGL  EG   F+SMK+  GIEP ++HY  +VDLL RAG L QA + ++ MP+KP
Sbjct: 441 LSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKP 500

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
            + ++G +L AC+ H+NV L E     + +L  DD G +VLL+NIYA A MW    ++R 
Sbjct: 501 GITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRT 560

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFV 580
           +M K  ++K  G S++EI   +  F SG     QS+++   +++ V
Sbjct: 561 IMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETLV 606



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 130/431 (30%), Positives = 224/431 (51%), Gaps = 12/431 (2%)

Query: 83  MIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMG 142
           M++GY +SS+   ALSF+  MK   +    Y + ++LK CG    L  G EIHG V+  G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 143 FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFD 202
           F  ++F + G++ MY+KC  +  A ++F+    +DLV WN ++ G+ + G    A  +  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 203 EMPQKDAISWSIMIDGYRKKKGDISSARILFE------HMPIKDLISWNS-MIDGYAKIG 255
            M ++     SI I        D    RI             + L++ ++ ++D Y+K G
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
            +  A+ +F+ M  R V SW+ MIDGY Q G+ + A+ +F++ML +GV+P  ++VMGA+ 
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240

Query: 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS 375
           ACA +G L+ GK++H  + + ++  D+ V  +LI MY KC  +D A  IF ++  K ++S
Sbjct: 241 ACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVS 300

Query: 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMK 435
           +N MI G   NG   EAL  F +M++  I  D    + V+ A +   +  +   I   + 
Sbjct: 301 WNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVI 360

Query: 436 RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLA 495
           R   ++  +   + LVD+ ++ G +  A  + + M  + ++  W  ++     H    L 
Sbjct: 361 RRF-LDKNVFVMTALVDMYAKCGAIHTARKLFDMMNAR-HVITWNAMIDGYGTHG---LG 415

Query: 496 EVVVEGLVELK 506
           +  VE   E+K
Sbjct: 416 KTSVELFKEMK 426



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 156/311 (50%), Gaps = 19/311 (6%)

Query: 242 ISWN-----SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
            SWN      +++ YAK   +  A  +F+ MPER++  W+ MI GYAQ+G  K AL L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
            M  +G RPD I+++  + A A    L +G  +H ++ R+     + V TAL+DMY KCG
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
           S+  AR IF  M  + V+S+N MI G   +G  E A+  F +M  EG+   ++  +G L 
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
           AC+  G    G +    +     ++  +   + L+ + S+   ++ A +I +++  K  L
Sbjct: 241 ACADLGDLERG-KFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNK-TL 298

Query: 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC--GLYVLLSNIYADAGM-------WE 527
             W  ++L     QN  + E  +    E+++ +     + ++S I A A +       W 
Sbjct: 299 VSWNAMILGYA--QNGCVNE-ALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWI 355

Query: 528 HALRIRKMMRK 538
           H L IR+ + K
Sbjct: 356 HGLVIRRFLDK 366


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 190/520 (36%), Positives = 288/520 (55%), Gaps = 46/520 (8%)

Query: 97  LSFYVNMKRKGLLVDNYTYPFVLKA--CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLI 154
           L  YV M  +G   D YT+P +LKA       G V G  +H  VVK G   +  V + L+
Sbjct: 3   LRVYVGMLARGARPDAYTFPPLLKAVTAAAERGAV-GDAVHAHVVKFGMELNAHVASSLV 61

Query: 155 GMYSKCGHMGCARSVFEGSEIK---DLVSWNLVLRGFVE--------CGEMGKAREVFDE 203
            MY+  G    AR++ +    +     V WN ++ G           C  +   R     
Sbjct: 62  LMYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRTGVVP 121

Query: 204 MP----------QKDAISW---------------------SIMIDGYRKKKGDISSARIL 232
            P           KD   W                     + +ID Y  +  ++ +A  L
Sbjct: 122 TPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMY-AECSEMDAAWEL 180

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
           FE M +++ +SW S+I G+ ++G +  A+ LF+ MPER+  SW+ MIDGY Q G  +EAL
Sbjct: 181 FEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREAL 240

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            +FREM    VR D  +++  ++ACAQ+GAL+ G+W  ++M R  I MD  V  AL+DMY
Sbjct: 241 EMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMY 300

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCGS+ +A  +F  M  ++  ++  +I GL +NG GEEA+  F +M       D++ F+
Sbjct: 301 SKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFI 360

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
           GVL AC+H+GL  +G   F SM    GI P + H+ CL+DLL RAG+L++AL  + +MPM
Sbjct: 361 GVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPM 420

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           +PN A+WGTLL ACR H N  + ++  E L+EL  ++  +Y+LLSN+YA +  WE   R+
Sbjct: 421 RPNSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTENGMVYILLSNLYAKSNRWEDVRRL 480

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           R+++ ++ IKKE G S+IE++G I EF++G+     S+E+
Sbjct: 481 RQVIMEKGIKKEPGCSLIEMNGTIHEFIAGDRSHPMSKEI 520



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 182/365 (49%), Gaps = 43/365 (11%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N +I G+ +S   + +   +V+M R G++    TY  VL ACG    +  G ++H  VV 
Sbjct: 92  NALISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVA 151

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
            G L D+ V N LI MY++C  M  A  +FEG E+++ VSW  V+ GF+  G++ +AR +
Sbjct: 152 SGVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTL 211

Query: 201 FDEMPQKDAISWSIMIDGY------------------RKKKGDISS-------------- 228
           FD MP++D +SW+ MIDGY                   K + D  +              
Sbjct: 212 FDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGAL 271

Query: 229 -----ARILFEHMPIK-DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
                ARI      IK D    N+++D Y+K G +  A  +F EM  R+ F+W+ +I G 
Sbjct: 272 ETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGL 331

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR-ITMD 341
           A +G+ +EA+ +F  ML     PD ++ +G ++AC   G +D G+   + M  S  I  +
Sbjct: 332 AVNGHGEEAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPN 391

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG---FGEEALKCFA 397
           ++    LID+  + G L EA     +M  + N   +  ++A   ++G    G+ A +   
Sbjct: 392 VMHFGCLIDLLGRAGKLKEALETIGNMPMRPNSAIWGTLLAACRVHGNSEIGQLAAEHLL 451

Query: 398 QMETE 402
           +++TE
Sbjct: 452 ELDTE 456



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 103/239 (43%), Gaps = 11/239 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            +DQA  LF+ + + +T     MI GY Q+   ++AL  +  M+   +  D +T   V+ 
Sbjct: 204 QVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVT 263

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L  G      + + G   D FV N L+ MYSKCG +  A  VF+   I+D  +
Sbjct: 264 ACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFT 323

Query: 181 WNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           W  V+ G    G   +A  +F  M       D +++ I +       G +   R  F  M
Sbjct: 324 WTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTF-IGVLTACTHAGLVDKGRDFFLSM 382

Query: 237 P-----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQHGNPK 289
                   +++ +  +ID   + G L  A +    MP R N   W  ++     HGN +
Sbjct: 383 TGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPMRPNSAIWGTLLAACRVHGNSE 441


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 184/525 (35%), Positives = 291/525 (55%), Gaps = 7/525 (1%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ A ++F ++ Q +    NT++ GY Q+   ++A+   + M+  G   D+ T   VL A
Sbjct: 193 IEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPA 252

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
              L  L  G  IHG   + GF   V V   ++  Y KCG +  AR VF+G   +++VSW
Sbjct: 253 VADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSW 312

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK---KKGDISSARILFEHMPI 238
           N ++ G+ + GE  +A   F +M  +     ++ + G        GD+   R +   +  
Sbjct: 313 NTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDE 372

Query: 239 K----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
           K    D+   NS+I  Y+K   +  A  +F  +  + V +W+ MI GYAQ+G   EAL L
Sbjct: 373 KKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNL 432

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           F EM    ++PD  +++  I+A A +      KWIH    R+ +  ++ V TALID + K
Sbjct: 433 FCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAK 492

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG++  AR++F  M +++VI++N MI G G NG G EAL  F +M+   +  +++ FL V
Sbjct: 493 CGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSV 552

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           + ACSHSGL  EG   F+SMK + G+EP ++HY  +VDLL RAG L+ A   ++ MP+KP
Sbjct: 553 IAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKP 612

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
            + + G +L ACR H+NV L E   + L +L  DD G +VLL+N+YA A MW+   R+R 
Sbjct: 613 GITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRT 672

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSF 579
            M K+ I+K  G S++E+   +  F SG     QS+ +   +++ 
Sbjct: 673 AMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETL 717



 Score =  225 bits (574), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 130/417 (31%), Positives = 220/417 (52%), Gaps = 17/417 (4%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           ++P   LL++  +   + QIL  +  N    E    ++L+      N++   +A R+F  
Sbjct: 44  RHPSAILLELCTSLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSIT--EAARVFEP 101

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           +      +++TM++GY ++S  + A+ FY  M+   ++   Y + ++L+  G  + L  G
Sbjct: 102 VEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRG 161

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            EIHG V+  GF  ++F +  ++ +Y+KC  +  A  +FE    +DLVSWN V+ G+ + 
Sbjct: 162 REIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQN 221

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI-----------LFEHMPIKD 240
           G   +A +V  +M +      SI +        D+ + RI            FE+M    
Sbjct: 222 GFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYM---- 277

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
           +    +M+D Y K G + +A+ +F  M  RNV SW+ MIDGYAQ+G  +EA   F +ML 
Sbjct: 278 VNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLD 337

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
           +GV P  +S+MGA+ ACA +G L+ G+++H  +   +I  D+ V  +LI MY KC  +D 
Sbjct: 338 EGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDI 397

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
           A  +F ++  K V+++N MI G   NG   EAL  F +M++  I  D    + V+ A
Sbjct: 398 AASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITA 454



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 209/421 (49%), Gaps = 29/421 (6%)

Query: 138 VVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKA 197
           ++K GF  +      LI ++ K   +  A  VFE  E K  V ++ +L+G+ +   +  A
Sbjct: 67  IIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDA 126

Query: 198 REVFDEM------PQKDAISWSIMIDGYRKKKGDISSAR----ILFEHMPIKDLISWNSM 247
              ++ M      P     ++ + + G   +  D+   R    ++  +    +L +  ++
Sbjct: 127 VRFYERMRCDEVMPVVYDFTYLLQLSG---ENLDLRRGREIHGMVITNGFQSNLFAMTAV 183

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           ++ YAK   +  A ++F  MP+R++ SW+ ++ GYAQ+G  + A+ +  +M   G +PD 
Sbjct: 184 VNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDS 243

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           I+++  + A A + AL +G+ IH +  R+     + V TA++D Y KCGS+  AR +F  
Sbjct: 244 ITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKG 303

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           M+ +NV+S+N MI G   NG  EEA   F +M  EG+   ++  +G L AC++ G    G
Sbjct: 304 MSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERG 363

Query: 428 YRIFQSM-KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
             + + + ++  G +  +   + L+ + S+   ++ A ++  ++  K  +  W  ++L  
Sbjct: 364 RYVHRLLDEKKIGFDVSV--MNSLISMYSKCKRVDIAASVFGNLKHK-TVVTWNAMILGY 420

Query: 487 RNHQNVTLAEVVVEGLVELKADDC--GLYVLLSNIYADAGM-------WEHALRIRKMMR 537
              QN  + E  +    E+++ D     + L+S I A A +       W H L IR +M 
Sbjct: 421 A--QNGCVNE-ALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMD 477

Query: 538 K 538
           K
Sbjct: 478 K 478


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 163/383 (42%), Positives = 250/383 (65%), Gaps = 5/383 (1%)

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
           N  ++G+   G +  AR VFD MP++D +S++ MI GY    GD+ SA+ LFE +     
Sbjct: 50  NAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGY-AVSGDVGSAQRLFERVLAPTP 108

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
           ++W SM+ G+ + GD+ +A+++F EMPER++ SW+ MI G   +  P EAL LFR M+ +
Sbjct: 109 VTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEE 168

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
           G  P+  +V+  +SAC   GAL+ GKW+HVF+++ R+  D  + TAL+DMY KCG+++ A
Sbjct: 169 GFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELA 228

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKDDLIFLGVLIACSH 420
             +F  +  +N  ++N MI GL MNG+  +AL  F QME  G +  D++ F+GVL+ACSH
Sbjct: 229 LEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSH 288

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
           +G    G   F ++ +  G+E  LEHY+C+VDLL+R+G L++A  ++  MPMKP++ +W 
Sbjct: 289 AGFVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWR 348

Query: 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540
            LL  CR H+NV +AE V+    E++A   G +VLLSN+YA  G W     +R+ MR + 
Sbjct: 349 ALLGGCRLHKNVKMAENVIS---EMEATCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSKG 405

Query: 541 IKKETGRSVIEIDGNIKEFVSGE 563
           I+K  G S +E+DG+I EF+SG+
Sbjct: 406 IEKIPGCSSVEMDGSIHEFISGD 428



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 146/298 (48%), Gaps = 43/298 (14%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D    N +I  Y+  G +G A+ +FE       V+W  ++ GF   G++  AR VF+EMP
Sbjct: 76  DTVSFNSMIHGYAVSGDVGSAQRLFERVLAPTPVTWTSMVAGFCRAGDVESARRVFEEMP 135

Query: 206 QKDAISWSIMI---------------------DGYRKKKGDISS-------ARIL----F 233
           ++D +SW+ MI                     +G+   +G + S       A  L    +
Sbjct: 136 ERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKW 195

Query: 234 EHMPI-KDLISWN-----SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN 287
            H+ + K  + W+     +++D YAK G +  A ++F  +  RN  +W+ MI+G A +G 
Sbjct: 196 VHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMNGY 255

Query: 288 PKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ- 345
             +AL +FR+M   G V PD ++ +G + AC+  G +D GK  H +    +  +++I++ 
Sbjct: 256 SAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGK-EHFYTIPQKYGVELILEH 314

Query: 346 -TALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
              ++D+  + G L EA ++   M  K +V+ +  ++ G  ++   + A    ++ME 
Sbjct: 315 YACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAENVISEMEA 372



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 122/276 (44%), Gaps = 16/276 (5%)

Query: 40  LITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSF 99
           L   P T + ++         +++ A R+F ++ + +    N MI G   +  P +AL  
Sbjct: 104 LAPTPVTWTSMVAGFCRAG--DVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCL 161

Query: 100 YVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSK 159
           +  M  +G + +  T   VL AC     L  G  +H  V K     D F+   L+ MY+K
Sbjct: 162 FRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAK 221

Query: 160 CGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP-----QKDAISWSI 214
           CG +  A  VF G   ++  +WN ++ G    G   KA ++F +M        D +++  
Sbjct: 222 CGAVELALEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVG 281

Query: 215 MIDGYRKKKGDISSARILFEHMPIK---DLI--SWNSMIDGYAKIGDLVAAQQLFNEMPE 269
           ++       G + + +  F  +P K   +LI   +  M+D  A+ G L  A +L  EMP 
Sbjct: 282 VLLAC-SHAGFVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPM 340

Query: 270 R-NVFSWSIMIDGYAQHGNPKEALYLFREM--LCQG 302
           + +V  W  ++ G   H N K A  +  EM   C G
Sbjct: 341 KPDVVVWRALLGGCRLHKNVKMAENVISEMEATCSG 376


>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
 gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
            Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
            multiple PPR PF|01535 repeats. ESTs gb|AV565358,
            gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
            thaliana]
 gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
          Length = 1322

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 191/573 (33%), Positives = 314/573 (54%), Gaps = 38/573 (6%)

Query: 6    AAKFSLKNP-LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQ 64
            +A  SL  P L  +++   T   +   LA +    L  +   ++Q + + TS   L  D 
Sbjct: 766  SASLSLAPPNLKKIIKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSFKRL--DL 823

Query: 65   AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
            A     Q+ +PN +++N + +G+   S+P ++L  YV M R  +   +YTY  ++KA   
Sbjct: 824  AVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSF 883

Query: 125  LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
                 E  + H  + K GF   V +   LI  YS  G                       
Sbjct: 884  ASRFGESLQAH--IWKFGFGFHVKIQTTLIDFYSATG----------------------- 918

Query: 185  LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
                     + +AR+VFDEMP++D I+W+ M+  YR+   D+ SA  L   M  K+  + 
Sbjct: 919  --------RIREARKVFDEMPERDDIAWTTMVSAYRRVL-DMDSANSLANQMSEKNEATS 969

Query: 245  NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
            N +I+GY  +G+L  A+ LFN+MP +++ SW+ MI GY+Q+   +EA+ +F +M+ +G+ 
Sbjct: 970  NCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGII 1029

Query: 305  PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
            PD +++   ISACA +G L++GK +H++  ++   +D+ + +AL+DMY KCGSL+ A  +
Sbjct: 1030 PDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLV 1089

Query: 365  FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
            F+++ KKN+  +N +I GL  +GF +EALK FA+ME E +  + + F+ V  AC+H+GL 
Sbjct: 1090 FFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLV 1149

Query: 425  TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
             EG RI++SM     I   +EHY  +V L S+AG + +AL ++ +M  +PN  +WG LL 
Sbjct: 1150 DEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLD 1209

Query: 485  ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
             CR H+N+ +AE+    L+ L+  + G Y LL ++YA+   W     IR  MR+  I+K 
Sbjct: 1210 GCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKI 1269

Query: 545  -TGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
              G S I ID     F + +     S+E+ L++
Sbjct: 1270 CPGTSSIRIDKRDHLFAAADKSHSASDEVCLLL 1302


>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
          Length = 530

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 176/513 (34%), Positives = 288/513 (56%), Gaps = 40/513 (7%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N +IR   +  +  + ++ Y +++ +GL+ D++TYPFVL+A GVL   VEG + H   +K
Sbjct: 18  NVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAIK 77

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
            GF  D +  + L+ MY+  G +  AR VF+    + LV WN+++R ++ CG    A  +
Sbjct: 78  TGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGRYSAAVAL 137

Query: 201 FDEM------PQKDAISWSI--------------------------------MIDGYRKK 222
            ++M      P +  +  ++                                ++D Y K 
Sbjct: 138 SEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGFNLPVANALLDMYTKN 197

Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
              +  A  LFE MP +++ISW  ++ GY   G L  A+ LFN+  E+++  W+ MI+  
Sbjct: 198 DC-LEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINAC 256

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
            QHG  +EAL LFR+M  Q V PD  +V+  ++ CA +GALD G+WIH + ++ ++ +D 
Sbjct: 257 VQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDA 316

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
           ++ TALIDMY KCG ++++  +F+ M  ++  ++  +I GL  NG    AL+ F  M+  
Sbjct: 317 VLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRS 376

Query: 403 GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
            +  D + F+GVL AC H GL  EG + F +M+    IEP++EHYSCLV+LL RAG L++
Sbjct: 377 KVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAGLLDE 436

Query: 463 ALNIVESMPM-KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521
           A  ++  +P+ K  + L+G LL AC+ H NV ++E + + + E  +    + +L+SN+YA
Sbjct: 437 AERLIGDVPINKDAMPLFGALLTACKAHGNVEMSERLTKRICEQDSQITDVNLLMSNVYA 496

Query: 522 DAGMWEHALRIRKMMRKRKIKKETGRSVIEIDG 554
            A  WE  +R+R  M    +KK  G S+IE+ G
Sbjct: 497 TASRWEDVIRVRGKMAHPTVKKTAGCSLIEVKG 529



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 159/346 (45%), Gaps = 44/346 (12%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            +D A ++F+++      + N M+R Y +      A++    M+R G+  D  T    + 
Sbjct: 99  RVDIARKVFDEMPSRALVLWNMMVRCYIRCGRYSAAVALSEQMERSGVTPDRVTLVTAVT 158

Query: 121 ACGVLMGLVEGTEIHGEVVKM-GFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           AC     L  G  IH  +  + GF  ++ V N L+ MY+K   +  A  +FE    ++++
Sbjct: 159 ACSRARDLSLGRRIHVYMDNVFGF--NLPVANALLDMYTKNDCLEEAVKLFEQMPARNII 216

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239
           SW +++ G+   G++ KAR +F++  +KD I W+ MI+    + G    A  LF  M ++
Sbjct: 217 SWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINAC-VQHGCFEEALTLFRDMQMQ 275

Query: 240 ---------------------------------------DLISWNSMIDGYAKIGDLVAA 260
                                                  D +   ++ID Y+K G +  +
Sbjct: 276 RVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKCGHIEKS 335

Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
            ++F  M  R+  +W+ +I G A +G    AL LF++M    V+PD ++ +G +SAC   
Sbjct: 336 LEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDGVTFIGVLSACCHG 395

Query: 321 GALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           G +D G K  H   +  +I   +   + L+++  + G LDEA R+ 
Sbjct: 396 GLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAGLLDEAERLI 441


>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 533

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 193/572 (33%), Positives = 310/572 (54%), Gaps = 65/572 (11%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERLFN 70
            N L SLL+  +  + + QI A L  + L   PF + QLL ++ TS N      A  +F 
Sbjct: 11  SNTLNSLLKKCRALSQLKQIHANLLQSHLPESPFAIGQLLSLAATSNNPSFFSHACLIFQ 70

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
            +   N +M+N+MIRGY  S +P +A+  Y++M   GLL +NYT+P ++KAC  L     
Sbjct: 71  NLSLRNIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTL----- 125

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
                G   K+                     +GC            LV  ++V  GF E
Sbjct: 126 -----GSSSKL---------------------IGC------------LVHAHVVTFGFDE 147

Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDG 250
                            D    S +I+ Y     D+ +AR LF+ +P +D++ W +MIDG
Sbjct: 148 -----------------DPFVVSALIEFY-SLNFDMGTARTLFDRIPNRDVVLWTAMIDG 189

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           Y K+GD+  A+ LF +MPERN  SWS ++  Y++ G+ KE L LFR M   G  P+   +
Sbjct: 190 YGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVL 249

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
           +  ++ACA +GAL  G W+H + K+     + I+ TAL+DMY KCG ++ A   F  +  
Sbjct: 250 VSVLTACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPN 309

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           K+  ++N MI+G+ MNG   ++L+ F +M + G    +  F+ VL AC+H+ L  EG ++
Sbjct: 310 KDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTHARLVKEGLKL 369

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP---MKPNLALWGTLLLACR 487
           F+ M  + G+EP+LEHY+CLVDL++RAG L +A   +E       + +  +WG +L ACR
Sbjct: 370 FEQMSSNYGVEPQLEHYACLVDLMARAGMLAEAEKFIEEKMGGLGRGDANVWGAMLGACR 429

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
            + N+ +   V + L ++   DCG +VL  N+Y +AG    A R+R+++ +  +KK+ G 
Sbjct: 430 TYGNIEVGNRVWKKLADMGVADCGTHVLSYNLYREAGWDMEAKRVRRLISEAGMKKKPGC 489

Query: 548 SVIEIDGNIKEFVSGEIFDVQSEELELVIQSF 579
           S+IE+DG ++EF++G++   Q+ ++   + S 
Sbjct: 490 SIIEVDGTVEEFLAGDLSHSQAPQICKTLDSL 521


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 198/602 (32%), Positives = 318/602 (52%), Gaps = 55/602 (9%)

Query: 29  LQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYT 88
            Q+ AQL  N +    F  S+LL       T  ++ A R+F+++ + N +    ++  Y 
Sbjct: 30  FQVHAQLVVNGVDVCEFLGSRLLEVYC--QTGCVEDARRMFDKMSERNVFSWTAIMEMYC 87

Query: 89  QSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF 148
              + ++ +  +  M  +G+  D++ +P V KAC  L     G +++  ++ +GF  +  
Sbjct: 88  GLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSC 147

Query: 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM---- 204
           V   ++ M+ KCG M  AR  FE  E KD+  WN+++ G+   GE  KA  VF +M    
Sbjct: 148 VKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEG 207

Query: 205 --PQKDAISWSI----------------------------------MIDGYRKKKGDISS 228
             P    I+ ++                                  ++D Y K +  +  
Sbjct: 208 VKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRS-VEV 266

Query: 229 ARILFEHMPIKDLISWNSM--IDGYAKIGDLVAAQQ----------LFNEMPERNVFSWS 276
           AR  F  +   DL+SWN+M  + G+ + GD  AA +          +F+E+  R+V  W+
Sbjct: 267 ARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWN 326

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS 336
            +I   AQ G    AL L REM    V  + ++++ A+ AC+++ AL  GK IH F+ R 
Sbjct: 327 SIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRC 386

Query: 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF 396
            +     +  +LIDMY +CGS+ ++RRIF  M +++++S+NVMI+  GM+GFG +A+  F
Sbjct: 387 GLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLF 446

Query: 397 AQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456
            Q  T G+  + + F  +L ACSHSGL  EG++ F+ MK    ++P +E Y+C+VDLLSR
Sbjct: 447 QQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSR 506

Query: 457 AGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLL 516
           AG+  + L  +E MP +PN A+WG+LL ACR H N  LAE     L EL+    G YVL+
Sbjct: 507 AGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLM 566

Query: 517 SNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
           +NIY+ AG WE A +IR +M++R + K  G S IE+   +  FV G+      E++   +
Sbjct: 567 ANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKM 626

Query: 577 QS 578
           +S
Sbjct: 627 ES 628



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 88/185 (47%), Gaps = 12/185 (6%)

Query: 305 PD-VISVMGAI-SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           PD  I +  +I   C ++  L LG  +H  +  + + +   + + L+++Y + G +++AR
Sbjct: 6   PDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDAR 65

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
           R+F  M+++NV S+  ++      G  EE +K F  M  EG+  D  +F  V  ACS   
Sbjct: 66  RMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELK 125

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSC----LVDLLSRAGELEQALNIVESMPMKPNLAL 478
               G  ++  M     +    E  SC    ++D+  + G ++ A    E +  K ++ +
Sbjct: 126 NYRVGKDVYDYM-----LSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFM 179

Query: 479 WGTLL 483
           W  ++
Sbjct: 180 WNIMV 184


>gi|242096286|ref|XP_002438633.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
 gi|241916856|gb|EER90000.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
          Length = 529

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 179/515 (34%), Positives = 289/515 (56%), Gaps = 47/515 (9%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N +IR   +  +  + ++ Y +++ +GL+ D+YTYPFVL+A GV+   VEG ++H   VK
Sbjct: 15  NVLIRTLARRGSFARVMAVYYDLRARGLVADSYTYPFVLRAIGVMKLSVEGRKVHAAAVK 74

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
            GF  D +  + L+ MY+  G +  AR VF+    + LV WN+++R ++ CG    A  +
Sbjct: 75  TGFRWDAYTASSLLEMYTMLGRVDFARKVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVAL 134

Query: 201 FDEMPQKDAISWSI--------------------------------------MIDGYRKK 222
            +EM +  A    +                                      ++D Y  K
Sbjct: 135 AEEMERSGATPDRVTLVTAVTACSRAGDLSLGRRIRAYMDGVFGFSLPVANALLDMY-TK 193

Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
            G +  A  +F+ MP +++ISW  ++ GYA  G L  A+ LF +  ++++  W+ MI+  
Sbjct: 194 NGYLEEAVKMFQQMPERNIISWTILVSGYAVAGQLDKARMLFYQCTQKDLILWTAMINAC 253

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
            QHG+ +EAL LFR+M  Q V PD  +V+  ++ CA +GALD G+WIH + +   + +D 
Sbjct: 254 VQHGSFEEALTLFRDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWIHQYAEGRNMKIDA 313

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
           ++ TALI+MY KCG +D++ +IF  M  ++  ++  +I GL  NG   +AL+ F +M+  
Sbjct: 314 VLGTALIEMYSKCGHVDKSLQIFGRMQGRDAAAWTAIICGLATNGQASKALELFEEMQRS 373

Query: 403 GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
               D + F+GVL AC H GL  EG R FQ+MK    IEP++EHYSCLV+LL  AG L +
Sbjct: 374 KTKPDGITFIGVLNACCHGGLVDEGRRHFQAMKEIYQIEPRIEHYSCLVNLLGHAGLLYE 433

Query: 463 ALNIVESMPMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG----LYVLLS 517
           A  ++  MP+  + + L+G LL AC+ + NV ++E + + + +   +DC     + VL+S
Sbjct: 434 AEKLIRDMPVNNDTMPLFGALLTACKAYGNVEMSERLTKRIAK---EDCSQNPDVNVLMS 490

Query: 518 NIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
           N+YA A  WE ++R+R  M    +KK  G S+IE+
Sbjct: 491 NVYATASRWEESIRVRSKMTHPAVKKTAGCSMIEV 525



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 164/371 (44%), Gaps = 46/371 (12%)

Query: 43  EPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVN 102
           + +T S LL   T      +D A ++F+++ Q    + N M+R Y +      A++    
Sbjct: 80  DAYTASSLLEMYTMLG--RVDFARKVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVALAEE 137

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKM-GFLCDVFVVNGLIGMYSKCG 161
           M+R G   D  T    + AC     L  G  I   +  + GF   + V N L+ MY+K G
Sbjct: 138 MERSGATPDRVTLVTAVTACSRAGDLSLGRRIRAYMDGVFGF--SLPVANALLDMYTKNG 195

Query: 162 HMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK 221
           ++  A  +F+    ++++SW +++ G+   G++ KAR +F +  QKD I W+ MI+    
Sbjct: 196 YLEEAVKMFQQMPERNIISWTILVSGYAVAGQLDKARMLFYQCTQKDLILWTAMINAC-V 254

Query: 222 KKGDISSARILFEHMPIK---------------------------------------DLI 242
           + G    A  LF  M ++                                       D +
Sbjct: 255 QHGSFEEALTLFRDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWIHQYAEGRNMKIDAV 314

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
              ++I+ Y+K G +  + Q+F  M  R+  +W+ +I G A +G   +AL LF EM    
Sbjct: 315 LGTALIEMYSKCGHVDKSLQIFGRMQGRDAAAWTAIICGLATNGQASKALELFEEMQRSK 374

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKR-SRITMDMIVQTALIDMYMKCGSLDEA 361
            +PD I+ +G ++AC   G +D G+     MK   +I   +   + L+++    G L EA
Sbjct: 375 TKPDGITFIGVLNACCHGGLVDEGRRHFQAMKEIYQIEPRIEHYSCLVNLLGHAGLLYEA 434

Query: 362 RRIFYSMTKKN 372
            ++   M   N
Sbjct: 435 EKLIRDMPVNN 445



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 130/305 (42%), Gaps = 23/305 (7%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            +D+A  LF Q  Q +  +   MI    Q  + ++AL+ + +M+ + +  D +T   +L 
Sbjct: 227 QLDKARMLFYQCTQKDLILWTAMINACVQHGSFEEALTLFRDMQLQRVEPDKFTVVTLLT 286

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C  +  L +G  IH          D  +   LI MYSKCGH+  +  +F   + +D  +
Sbjct: 287 CCANIGALDQGEWIHQYAEGRNMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGRDAAA 346

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK---KKGDISSARILFEHMP 237
           W  ++ G    G+  KA E+F+EM +       I   G        G +   R  F+ M 
Sbjct: 347 WTAIICGLATNGQASKALELFEEMQRSKTKPDGITFIGVLNACCHGGLVDEGRRHFQAM- 405

Query: 238 IKDLISWNSMIDGYAKI-------GDLVAAQQLFNEMPERN--VFSWSIMIDGYAQHGNP 288
            K++      I+ Y+ +       G L  A++L  +MP  N  +  +  ++     +GN 
Sbjct: 406 -KEIYQIEPRIEHYSCLVNLLGHAGLLYEAEKLIRDMPVNNDTMPLFGALLTACKAYGNV 464

Query: 289 KEALYLFREMLCQGV--RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
           + +  L + +  +     PDV  +M  + A A        +W      RS++T   + +T
Sbjct: 465 EMSERLTKRIAKEDCSQNPDVNVLMSNVYATAS-------RWEESIRVRSKMTHPAVKKT 517

Query: 347 ALIDM 351
           A   M
Sbjct: 518 AGCSM 522


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 162/360 (45%), Positives = 252/360 (70%), Gaps = 3/360 (0%)

Query: 215 MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
           ++D Y  K GD+ SA+ +F+ MP + L+S  +MI  YAK G++ AA+ LF+ M ER++ S
Sbjct: 165 LVDIY-AKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVS 223

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHVFM 333
           W++MIDGY+QHG P +AL LF+++L  G  +PD I+V+ A+SAC+Q+GAL+ G+WIHVF+
Sbjct: 224 WNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFV 283

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
             SRI +++ V TALIDMY KCGSL+EA  +F    +K+++++N MI G  M+G+ ++AL
Sbjct: 284 NSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDAL 343

Query: 394 KCFAQME-TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
           + F +M+   G+   D+ F+G L AC+H+GL  EG +IF+SM +  GI+PK+EHY CLV 
Sbjct: 344 RLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVS 403

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
           LL RAG+L++A  I+++M M+ +  LW ++L +C+ H    L + + E L+     + G+
Sbjct: 404 LLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGI 463

Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           YVLLSNIYA  G +E   ++R +M+++ I KE G S IEID  + EF +G+   ++S+E+
Sbjct: 464 YVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDREHLKSKEI 523



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/412 (26%), Positives = 188/412 (45%), Gaps = 52/412 (12%)

Query: 5   AAAKFSLKNP----LVSLLQISKTTTHILQILAQLTTNDLITEP-FTLSQLLMSLTSPNT 59
           A A  S +NP    L   +  S +   +LQI A +  ++L+  P + +  L +     + 
Sbjct: 16  ATATASFRNPPPEKLAVFIDNSHSVDEVLQIHAAILRHNLLIHPRYPVLNLKLHRAYASH 75

Query: 60  LNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVL 119
             +  +  LF+Q   P+ ++    I   + +    +A   YV +    +  + +T+  +L
Sbjct: 76  GKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSIL 135

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           K+C    G +    IH  V+K G   D +V  GL+ +Y+K G +  A+ VF+    + LV
Sbjct: 136 KSCSTKSGKL----IHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLV 191

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM--- 236
           S   ++  + + G +  AR +FD M ++D +SW++MIDGY  + G  S A +LF+ +   
Sbjct: 192 SSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGY-SQHGFPSDALMLFQKLLAD 250

Query: 237 --PIKDLIS------------------W-----------------NSMIDGYAKIGDLVA 259
             P  D I+                  W                  ++ID Y+K G L  
Sbjct: 251 GKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEE 310

Query: 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML-CQGVRPDVISVMGAISACA 318
           A  +FN+ P +++ +W+ MI GYA HG  ++AL LF EM    G++P  I+ +G + ACA
Sbjct: 311 AVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACA 370

Query: 319 QVGALDLGKWIHVFMKRSRITMDMIVQTA-LIDMYMKCGSLDEARRIFYSMT 369
             G ++ G  I   M +       I     L+ +  + G L  A  I  +M 
Sbjct: 371 HAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMN 422


>gi|297744558|emb|CBI37820.3| unnamed protein product [Vitis vinifera]
          Length = 504

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 184/513 (35%), Positives = 300/513 (58%), Gaps = 37/513 (7%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           MD+A +LF+ + + N    N M+ G+ Q+ + ++A+ F++ M  +    D+ +       
Sbjct: 1   MDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPER----DSASL------ 50

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCD----------VFVVNGLIGMYSKCGHMGCARSVFE 171
             ++ GL++  E+  +  K   L            V   N L+  Y + G +  AR +F+
Sbjct: 51  SALVAGLIQNGEL--DEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFD 108

Query: 172 ------------GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY 219
                       G   +++VSWN ++  +V+  ++  AR +FD+M ++D ISW+ MI GY
Sbjct: 109 QIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGY 168

Query: 220 RKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMI 279
             +  D+  A +LF+ MP  D ++WNSMI G+A+ G+L  A+ LF  +P++N+ SW+ MI
Sbjct: 169 -VRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMI 227

Query: 280 DGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRIT 339
            GY  +G+ K A  L+R+ML QG +PD  ++   +S C+   AL LG  IH  + ++ I 
Sbjct: 228 AGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVIP 287

Query: 340 MDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
            D+ +  +LI MY +CG++ EAR IF  +  +K VIS+N MI G   +GF  +AL+ F  
Sbjct: 288 -DIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFEL 346

Query: 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458
           M+   +    + F+ VL AC+H+G   EG   F+SM    GIEP++EH++ LVD++ R G
Sbjct: 347 MKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHG 406

Query: 459 ELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSN 518
           +LE+A++++ SMP +P+ A+WG LL ACR H NV LA V  E L++L+ +    YVLL N
Sbjct: 407 QLEEAMDLINSMPFEPDKAVWGALLGACRVHNNVELARVAAEALMKLEPESSAPYVLLHN 466

Query: 519 IYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
           +YAD G W++A  +R MM +  I+K+ G S ++
Sbjct: 467 MYADVGQWDNATEMRMMMERNNIRKQPGYSWVD 499



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 117/261 (44%), Gaps = 24/261 (9%)

Query: 50  LLMSLTSPNTL-------------NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKA 96
           L   + +P+TL             N++ A  LF  I Q N    N+MI GY  + + + A
Sbjct: 180 LFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGA 239

Query: 97  LSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGM 156
              Y  M  +G   D +T   VL  C     L  G +IH ++ K   + D+ + N LI M
Sbjct: 240 TELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKT-VIPDIPINNSLITM 298

Query: 157 YSKCGHMGCARSVFEGSEI-KDLVSWNLVLRGFVECGEMGKAREVFDEMPQ---KDAISW 212
           YS+CG +  AR++F+  ++ K+++SWN ++ G+   G    A E+F+ M +   +     
Sbjct: 299 YSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYIT 358

Query: 213 SIMIDGYRKKKGDISSARILFEHMPIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEM 267
            I +       G +   R+ F+ M  +  I      + S++D   + G L  A  L N M
Sbjct: 359 FISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSM 418

Query: 268 P-ERNVFSWSIMIDGYAQHGN 287
           P E +   W  ++     H N
Sbjct: 419 PFEPDKAVWGALLGACRVHNN 439


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 178/526 (33%), Positives = 288/526 (54%), Gaps = 36/526 (6%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A ++F++I + N  + N MIR Y  +   ++ +  +  M    +  D+YT+P VLKAC  
Sbjct: 94  ARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSC 153

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
              +V G +IHG   K+G    +FV NGL+ MY KCG +                     
Sbjct: 154 SGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLS-------------------- 193

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK---DL 241
                      +AR V DEM ++D +SW+ ++ GY + +    +  +  E   +K   D 
Sbjct: 194 -----------EARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDA 242

Query: 242 ISWNSMIDGYAKIG--DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
            +  S++   +     +++  + +F +M ++++ SW++MI  Y ++  P EA+ L+  M 
Sbjct: 243 GTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGME 302

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
             G  PD +S+   + AC    AL LGK IH +++R ++  +++++ ALIDMY KCG LD
Sbjct: 303 ADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLD 362

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
            AR +F +M  ++V+S+  MI+  G +G G +A+  F++M+  G+  D + F+  L ACS
Sbjct: 363 RARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACS 422

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           H+GL  EG   F+ M  H  I P+LEH +C+VDLL RAG++++A   ++ MPM+PN  +W
Sbjct: 423 HAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVW 482

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
           G LL ACR H N  +  +  + L +L  +  G YVLLSNIYA AG WE    IR +M+ +
Sbjct: 483 GALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSK 542

Query: 540 KIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
            +KK  G S +E++  I  F+ G+    QS E+   +   VK   E
Sbjct: 543 GLKKNPGASNVEVNRIIHTFLVGDRSHPQSAEIYRELDVLVKKMKE 588



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 170/347 (48%), Gaps = 19/347 (5%)

Query: 205 PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNS-----MIDGYAKIGDLVA 259
           P++ A     ++D Y     D+ + R +   +  +DL  +NS     ++  YA + D+  
Sbjct: 39  PKETAFMLGQVLDTY----PDLKTLRTVHSRIISEDL-RYNSSLGVKLMRAYASLKDVAT 93

Query: 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
           A+++F+E+PERNV   ++MI  Y  +G  +E + +F  M    V+PD  +    + AC+ 
Sbjct: 94  ARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSC 153

Query: 320 VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVM 379
            G + +GK IH    +  ++  + V   L+ MY KCG L EAR +   M++++V+S+N +
Sbjct: 154 SGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSL 213

Query: 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439
           +AG   N   ++AL+   +ME+  I  D      +L A S++   TE     + M    G
Sbjct: 214 VAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT--TTENVMYVKDMFFKMG 271

Query: 440 IEPKLEHYSCLVDLLSRAGELEQALNIVESMP---MKPNLALWGTLLLACRNHQNVTLAE 496
            +  L  ++ ++ +  +     +A+ +   M     +P+     ++L AC +   ++L +
Sbjct: 272 -KKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGK 330

Query: 497 VVVEGLVELKA--DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
             + G +E K    +  L   L ++YA  G  + A  + + M+ R +
Sbjct: 331 -KIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDV 376



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 130/285 (45%), Gaps = 11/285 (3%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           N LV+    ++     L++  ++ +  +  +  T++ LL ++++  T N+   + +F ++
Sbjct: 211 NSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKM 270

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
            + +    N MI  Y +++ P +A+  Y  M+  G   D  +   VL ACG    L  G 
Sbjct: 271 GKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGK 330

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           +IHG + +   + ++ + N LI MY+KCG +  AR VFE  + +D+VSW  ++  +   G
Sbjct: 331 KIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSG 390

Query: 193 EMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILF----EHMPIKD-LIS 243
               A  +F +M       D+I++   +       G +   R  F    +H  I   L  
Sbjct: 391 RGCDAVALFSKMQDSGLVPDSIAFVTTLAAC-SHAGLLEEGRSCFKLMTDHYKITPRLEH 449

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
              M+D   + G +  A +   EMP E N   W  ++     H N
Sbjct: 450 LACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSN 494


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 184/470 (39%), Positives = 267/470 (56%), Gaps = 63/470 (13%)

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           M+   +L D +T  FVLKAC  L  +V G  IHG   K+GF  ++F+ N           
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQN----------- 49

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK 222
                               ++L  +  CGEMG                           
Sbjct: 50  --------------------MILNLYGLCGEMG--------------------------- 62

Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
                 A +LFE MP +D ++WN +I   AK GD+  A   F  MP +NV SW+ MI G+
Sbjct: 63  -----DAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGF 117

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
            Q G P EA+ LF ++  + VRP+ ++V+  ++ACA +G LDLG+ +H +  +S    ++
Sbjct: 118 VQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNV 177

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
            V   LIDMY+KCG L+ ARR+FY M ++ V+S++ MIAGL M+G  EEAL  F++M   
Sbjct: 178 HVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKL 237

Query: 403 GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
           G+  + + F+G+L ACSH GL  EG R F SM    G+ P++EHY C+VDL SRAG LE+
Sbjct: 238 GVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEE 297

Query: 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522
           A   + SMP+KPN  +WG LL  C+ H+N+ LAE  ++ L EL   + G YV++SNIYA+
Sbjct: 298 AHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAE 357

Query: 523 AGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           A  WE A R+RK+M+ R +KK +G S I ++G + EFV+G+    Q+E++
Sbjct: 358 AERWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDI 407



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 122/286 (42%), Gaps = 15/286 (5%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           L+N +++L  +       + +  ++   D +T    ++QL          ++D A   F 
Sbjct: 47  LQNMILNLYGLCGEMGDAMLLFEKMPQRDAVTWNIVIAQL------AKRGDIDGAYGFFL 100

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
           ++   N     +MI G+ Q   P +A+  ++ ++ + +  +  T   VL AC  L  L  
Sbjct: 101 RMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDL 160

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G  +H    K GF  +V V N LI MY KCG +  AR VF   E + +VSW+ ++ G   
Sbjct: 161 GRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAM 220

Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYR---KKKGDISSARILFEHMP-----IKDLI 242
            G+  +A  +F EM +       +   G        G I   R  F  M      I  + 
Sbjct: 221 HGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIE 280

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
            +  ++D +++ G L  A +    MP + N   W  ++ G   H N
Sbjct: 281 HYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKN 326


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  338 bits (866), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 195/589 (33%), Positives = 311/589 (52%), Gaps = 87/589 (14%)

Query: 49   QLLMSLTS----PNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMK 104
            Q L+   S    P +L+ + A   +  + + N +  N++I    +  +  +AL  + +++
Sbjct: 1075 QFLLGFPSSRRRPVSLSSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLR 1134

Query: 105  RKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG 164
            + GL+    ++P  +K+C  L  LV G   H +    GF  D+FV + LI MYSKCG   
Sbjct: 1135 KLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCG--- 1191

Query: 165  CARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKG 224
                     ++KD                   AR +FDE+P ++ +SW+ MI GY + + 
Sbjct: 1192 ---------QLKD-------------------ARALFDEIPLRNVVSWTSMITGYVQNE- 1222

Query: 225  DISSARILFE-------------HMPIKDLI----------------------------- 242
               +A +LF+             ++P+  ++                             
Sbjct: 1223 QADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGF 1282

Query: 243  -----SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
                   N+++D YAK G  + ++++F+ M E++  SW+ MI  YAQ G   EAL +F  
Sbjct: 1283 DGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHG 1342

Query: 298  MLCQ-GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
            M+   GVR + +++   + ACA  GAL  GK IH  + +  +  ++ V T++IDMY KCG
Sbjct: 1343 MVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCG 1402

Query: 357  SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
             ++ A++ F  M +KNV S+  M+AG GM+G  +EAL  F +M   G+  + + F+ VL 
Sbjct: 1403 RVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLA 1462

Query: 417  ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
            ACSH+GL  EG+  F +MK    IEP +EHY C+VDL  RAG L +A N+++ M MKP+ 
Sbjct: 1463 ACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDF 1522

Query: 477  ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
             +WG+LL ACR H+NV L E+  + L EL  D+CG YVLLSN+YADAG W    R+R +M
Sbjct: 1523 VVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLM 1582

Query: 537  RKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
            + R++ K  G S++E+ G +  F+ G   D +    E++ +   K T+E
Sbjct: 1583 KNRQLVKPPGFSLVELKGRVHVFLVG---DKEHPHHEMIYKYLEKLTLE 1628



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 130/419 (31%), Positives = 212/419 (50%), Gaps = 52/419 (12%)

Query: 87  YTQSSNPQK--ALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFL 144
           YT    P K   L+   N++ K  L       F+L+ C     L    +IH ++++ G  
Sbjct: 7   YTHDVFPSKNIPLTPRGNIRAKKAL-------FLLQNCKNFKHL---RQIHAKIIRSGLS 56

Query: 145 CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM 204
            D  +   LI +YS  G +  A  +F   +     +WNL++R     G   +A  ++  M
Sbjct: 57  NDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNM 116

Query: 205 ------------P---------------------------QKDAISWSIMIDGYRKKKGD 225
                       P                             D    + +ID Y K  G 
Sbjct: 117 VCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKC-GH 175

Query: 226 ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
              A  +FE M +++++SW ++I G    GDL  A+++F+E+P +NV SW+ MI+GY ++
Sbjct: 176 TRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRN 235

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
             P+EAL LF+ M  + + P+  +++  I AC ++G L LG+ IH +  ++ I + + + 
Sbjct: 236 QQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLG 295

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
           TALIDMY KCGS+ +A  +F +M +K++ ++N MI  LG++G G+EAL  F++ME   + 
Sbjct: 296 TALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVK 355

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL 464
            D + F+GVL AC H     EG   F  M +H GI P  EHY C+ +L +R+  L++A 
Sbjct: 356 PDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAF 414



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 122/384 (31%), Positives = 191/384 (49%), Gaps = 43/384 (11%)

Query: 18  LLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNT 77
           LLQ  K   H+ QI A++  + L  +   L++ L+ L S +   +  A  LF QI  P T
Sbjct: 33  LLQNCKNFKHLRQIHAKIIRSGLSNDQL-LTRKLIHLYSTHG-RIAYAILLFYQIQNPCT 90

Query: 78  YMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGE 137
           +  N +IR  T +   ++AL  Y NM  +G+  D +T+PFV+KAC   + +  G  +HG 
Sbjct: 91  FTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGS 150

Query: 138 VVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKA 197
           ++K GF  DVFV N LI  Y KCGH   A  VFE   ++++VSW  V+ G + CG++ +A
Sbjct: 151 LIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEA 210

Query: 198 REVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM--------------------- 236
           R +FDE+P K+ +SW+ MI+GY + +     A  LF+ M                     
Sbjct: 211 RRIFDEIPSKNVVSWTAMINGYIRNQ-QPEEALELFKRMQAENIFPNEYTMVSLIKACTE 269

Query: 237 -------------PIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM 278
                         IK+ I        ++ID Y+K G +  A ++F  MP +++ +W+ M
Sbjct: 270 MGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSM 329

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338
           I     HG  +EAL LF EM    V+PD I+ +G + AC  +  +  G      M +   
Sbjct: 330 ITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYG 389

Query: 339 TMDMIVQ-TALIDMYMKCGSLDEA 361
              +      + ++Y +  +LDEA
Sbjct: 390 IAPIPEHYECMTELYARSNNLDEA 413



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 134/274 (48%), Gaps = 33/274 (12%)

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           +I  Y+  G +  A  LF ++     F+W+++I     +G  ++AL L++ M+CQG+  D
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG---------- 356
             +    I AC    ++DLGK +H  + +   + D+ VQ  LID Y KCG          
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184

Query: 357 ---------------------SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
                                 L EARRIF  +  KNV+S+  MI G   N   EEAL+ 
Sbjct: 185 KMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALEL 244

Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           F +M+ E I  ++   + ++ AC+  G+ T G  I     ++C IE  +   + L+D+ S
Sbjct: 245 FKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNC-IEIGVYLGTALIDMYS 303

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
           + G ++ A+ + E+MP K +L  W +++ +   H
Sbjct: 304 KCGSIKDAIEVFETMPRK-SLPTWNSMITSLGVH 336



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 10/206 (4%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           ++N L+        T   L++  ++   ++++    +S L+      +  ++ +A R+F+
Sbjct: 162 VQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLI------SCGDLQEARRIFD 215

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
           +I   N      MI GY ++  P++AL  +  M+ + +  + YT   ++KAC  +  L  
Sbjct: 216 EIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTL 275

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G  IH   +K      V++   LI MYSKCG +  A  VFE    K L +WN ++     
Sbjct: 276 GRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGV 335

Query: 191 CGEMGKAREVFDEMP----QKDAISW 212
            G   +A  +F EM     + DAI++
Sbjct: 336 HGLGQEALNLFSEMERVNVKPDAITF 361



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 11/218 (5%)

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
           + IH  + RS ++ D ++   LI +Y   G +  A  +FY +      ++N++I    +N
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
           G  E+AL  +  M  +GI  D   F  V+ AC++      G  +  S+ ++ G    +  
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKY-GFSGDVFV 162

Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL---LLACRNHQNVTLAEVVVEGLV 503
            + L+D   + G    AL + E M ++ N+  W T+   L++C + Q    A  + +   
Sbjct: 163 QNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISGLISCGDLQE---ARRIFD--- 215

Query: 504 ELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           E+ + +   +  + N Y      E AL + K M+   I
Sbjct: 216 EIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENI 253


>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
          Length = 768

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 186/535 (34%), Positives = 297/535 (55%), Gaps = 47/535 (8%)

Query: 88  TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV 147
           T+     K  + Y N   +   ++  T+ F+L+ CG L  L    +IHG+ V +G LC  
Sbjct: 233 TERWPSXKKFASYTN---RNAHMNTQTFYFLLQKCGSLEKL---KQIHGKAVTLGLLCSK 286

Query: 148 --FVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM- 204
              +   L+  Y++ G    A+ VF   +  D+VSW  ++  ++   +  KA  +F  + 
Sbjct: 287 RQHLACKLLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLF 346

Query: 205 -----PQKDAISWSIMIDGYRK--------------------------------KKGDIS 227
                P    +  ++   G+RK                                + G I 
Sbjct: 347 HSGLRPDSFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIE 406

Query: 228 SARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN 287
            A  +F+ M IKD+ SW S+++G+ K  D+ AA+++F+EMP RN  SW+ MI GY Q   
Sbjct: 407 VACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEV 466

Query: 288 PKEALYLFREMLCQGVR-PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
           P   L LF+EM  +G   P VI+++  +S CA +GA DLG  +H ++ ++ + +D+ V  
Sbjct: 467 PIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNN 526

Query: 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK 406
           AL+DMY K G+L  A +IF  M K++V S+  MI+GL ++G G  AL+ F+ M   G   
Sbjct: 527 ALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXP 586

Query: 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466
           +++  L VL ACSH+GL  EG  +FQ M +  GI+PK++HY C+VDLL RAG L +A  +
Sbjct: 587 NEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKEL 646

Query: 467 VESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMW 526
           +E MP+KP+  +W +LL AC  H N+ LAE+  + ++EL+ DD G+Y+LL NIY  A  W
Sbjct: 647 IEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRW 706

Query: 527 EHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
           E AL+ RK MR R++KK+ G S +E++G + EF++ +       ++  V+++  +
Sbjct: 707 EDALKARKAMRDRRVKKKPGCSWVEVNGVVHEFLAEDAVHCIRADVYTVLEAITE 761



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 124/403 (30%), Positives = 194/403 (48%), Gaps = 51/403 (12%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A+++FN I  P+      +I  Y  +S P KA S + ++   GL  D++     + ACG 
Sbjct: 307 AQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGH 366

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
              L  G  +HG V +     D  V N LI MYS+ G +  A SVF+  EIKD+ SW  +
Sbjct: 367 RKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSL 426

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK----- 239
           L GF++C ++  AR +FDEMP ++++SW+ MI GY + +  I     LF+ M  +     
Sbjct: 427 LNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLE-LFQEMRAEGKDWP 485

Query: 240 -----------------------------------DLISWNSMIDGYAKIGDLVAAQQLF 264
                                              D+   N+++D YAK G LV A ++F
Sbjct: 486 TVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIF 545

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
            EMP+R+VFSW+ MI G A HG    AL  F +M   G  P+ ++++  +SAC+  G + 
Sbjct: 546 QEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAGLVV 605

Query: 325 LGKWIHVFMKRSRITMDMIVQTA-LIDMYMKCGSLDEARRIFYSMTKK--NVISYNVMIA 381
            G+ +   M +       I     ++D+  + G L EA+ +   M  K  +VI  +++ A
Sbjct: 606 EGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSA 665

Query: 382 GL--GMNGFGEEALKCFAQMETEGIPKDDLIFLGVL-IACSHS 421
            L  G     E A K   ++E    P DD +++ +  I CS S
Sbjct: 666 CLVHGNLALAEMAGKMIIELE----PDDDGVYILLWNIYCSAS 704



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 20/242 (8%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A R+F+++   N+     MI GY Q   P   L  +  M+ +G       +P V+ 
Sbjct: 435 DIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEG-----KDWPTVIT 489

Query: 121 ACGVLMGLVE------GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174
              VL G  +      G+ +HG V K     DV V N L+ MY+K G +  A  +F+   
Sbjct: 490 IVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMP 549

Query: 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR---KKKGDISSARI 231
            +D+ SW  ++ G    G+   A E F +M +       + +          G +   R 
Sbjct: 550 KRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAGLVVEGRS 609

Query: 232 LFEHM----PIKDLIS-WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQH 285
           LF+ M     IK  I  +  M+D   + G L  A++L   MP + +   W  ++     H
Sbjct: 610 LFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVH 669

Query: 286 GN 287
           GN
Sbjct: 670 GN 671


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 187/567 (32%), Positives = 305/567 (53%), Gaps = 39/567 (6%)

Query: 41  ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFY 100
           I EP    +  M      T  +D A  LF+ + + +    N M+   +QS   ++AL   
Sbjct: 199 IKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMV 258

Query: 101 VNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC 160
           V+M+ KG+ +D+ TY   L AC  L  L  G ++H +V++     D +V + L+ +Y+K 
Sbjct: 259 VDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKS 318

Query: 161 GHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMI 216
           G    A+ VF     ++ V+W +++ GF++ G   ++ E+F++M  +    D  + + +I
Sbjct: 319 GCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLI 378

Query: 217 DG----------------------------------YRKKKGDISSARILFEHMPIKDLI 242
            G                                     K  ++ SA  +F  M  KD++
Sbjct: 379 SGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIV 438

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
           SW SMI  Y+++G++  A++ F+ M E+NV +W+ M+  Y QHG  ++ L +++ ML + 
Sbjct: 439 SWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEE 498

Query: 303 -VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
            VRPD ++ +     CA +GA  LG  I     +  + +D  V  A+I MY KCG + EA
Sbjct: 499 YVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEA 558

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
           R++F  +  K+++S+N MI G   +G G++A++ F  +   G   D + ++ VL  CSHS
Sbjct: 559 RKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHS 618

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           GL  EG   F  MKR   I P LEH+SC+VDLL RAG L +A ++++ MPMKP   +WG 
Sbjct: 619 GLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGA 678

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           LL AC+ H N  LAE+  + + EL + D G Y+L++ IYADAG  + + +IRK+MR + I
Sbjct: 679 LLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGI 738

Query: 542 KKETGRSVIEIDGNIKEFVSGEIFDVQ 568
           KK  G S +E+D  +  F + ++   Q
Sbjct: 739 KKNPGYSWMEVDNKVHVFKADDVSHPQ 765



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 192/404 (47%), Gaps = 43/404 (10%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           Q+ AQ+  N    +P+  S L+            +A+ +FN ++  N      +I G+ Q
Sbjct: 291 QLHAQVIRNLPHIDPYVASALVELYAKSGCFK--EAKGVFNSLHDRNNVAWTVLISGFLQ 348

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
                +++  +  M+ + + +D +    ++  C   M L  G ++H   +K G +  V V
Sbjct: 349 YGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVV 408

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA 209
            N LI MY+KC ++  A ++F     KD+VSW  ++  + + G + KARE FD M +K+ 
Sbjct: 409 SNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNV 468

Query: 210 ISWSIMIDGYRKKKGDISSAR----ILFEHMPIKDLISW--------------------- 244
           I+W+ M+  Y +   +    R    +L E     D +++                     
Sbjct: 469 ITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIG 528

Query: 245 --------------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
                         N++I  Y+K G ++ A+++F+ +  +++ SW+ MI GY+QHG  K+
Sbjct: 529 RTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQ 588

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR-ITMDMIVQTALI 349
           A+ +F ++L +G +PD IS +  +S C+  G +  GK+    MKR+  I+  +   + ++
Sbjct: 589 AIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMV 648

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVIS-YNVMIAGLGMNGFGEEA 392
           D+  + G L EA+ +   M  K     +  +++   ++G  E A
Sbjct: 649 DLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELA 692



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/453 (24%), Positives = 197/453 (43%), Gaps = 56/453 (12%)

Query: 50  LLMSLTSPNTLN-------------MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKA 96
           LLM +  PN +              +  A  LF ++   +    NT++ GY QS     +
Sbjct: 62  LLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVS 121

Query: 97  LSFYVNMKRKGLLVDN-YTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIG 155
           L  +++M R G    N +T    +K+CG L       ++   V K     D  V   L+ 
Sbjct: 122 LETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVD 181

Query: 156 MYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIM 215
           M+ +CG +  A  +F   +   +   N +L G+V+   +  A E+FD MP++D +SW++M
Sbjct: 182 MFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMM 241

Query: 216 ID---------------------GYRKKKGDISS-----ARI------------LFEHMP 237
           +                      G R      +S     AR+            +  ++P
Sbjct: 242 VSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLP 301

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
             D    +++++ YAK G    A+ +FN + +RN  +W+++I G+ Q+G   E++ LF +
Sbjct: 302 HIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQ 361

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
           M  + +  D  ++   IS C     L LG+ +H    +S     ++V  +LI MY KC +
Sbjct: 362 MRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDN 421

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
           L  A  IF  M +K+++S+  MI      G   +A + F  M  + +    + +  +L A
Sbjct: 422 LQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNV----ITWNAMLGA 477

Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
               G   +G R+++ M     + P    Y  L
Sbjct: 478 YIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTL 510



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 120/496 (24%), Positives = 207/496 (41%), Gaps = 80/496 (16%)

Query: 114 TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCAR------ 167
            +   L++CG    L     +HG +V +G    VF+ N L+  Y  CG +  AR      
Sbjct: 6   AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMD 65

Query: 168 --------------------------SVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVF 201
                                      +F     +D+ SWN ++ G+ +  +   + E F
Sbjct: 66  IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETF 125

Query: 202 -------DEMPQK----------DAISWS-------IMIDGYRKKK-------------- 223
                  D  P             A+ W         M+  +  +               
Sbjct: 126 LSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVR 185

Query: 224 -GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
            G +  A  LF  +    +   NSM+ GY K   +  A +LF+ MPER+V SW++M+   
Sbjct: 186 CGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSAL 245

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
           +Q G  +EAL +  +M  +GVR D  +   +++ACA++ +L  GK +H  + R+   +D 
Sbjct: 246 SQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDP 305

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
            V +AL+++Y K G   EA+ +F S+  +N +++ V+I+G    G   E+++ F QM  E
Sbjct: 306 YVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAE 365

Query: 403 GIPKDDLIFLGVLIA--CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460
            +  D    L  LI+  CS   L     R   S+    G    +   + L+ + ++   L
Sbjct: 366 LMTLDQFA-LATLISGCCSRMDLCLG--RQLHSLCLKSGQIQAVVVSNSLISMYAKCDNL 422

Query: 461 EQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520
           + A  I   M  K ++  W +++ A     NV  A    +G+ E    +   +  +   Y
Sbjct: 423 QSAEAIFRFMNEK-DIVSWTSMITAYSQVGNVAKAREFFDGMSE---KNVITWNAMLGAY 478

Query: 521 ADAGMWEHALRIRKMM 536
              G  E  LR+ K+M
Sbjct: 479 IQHGAEEDGLRMYKVM 494


>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 617

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 201/532 (37%), Positives = 297/532 (55%), Gaps = 24/532 (4%)

Query: 50  LLMSLTSPNTL--------NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQK-ALSFY 100
           LL S+  PN L        + + A  L +   +PN Y  N MIRG T   N  + ALS Y
Sbjct: 58  LLHSVEKPNFLIPKAVELGDFNYASFLLSVTEEPNHYSFNYMIRGLTNIWNDHEGALSLY 117

Query: 101 VNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC 160
             MK  GL  DN+TY FV  ACG    +  G  +H  + K+G   D  + + LI MY+KC
Sbjct: 118 RRMKYSGLKPDNFTYNFVFIACGKREEIGVGRSVHSSLFKVGLERDDHISHSLIMMYAKC 177

Query: 161 GHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMI 216
           G +G AR VF+    +  VSWN ++ G+ E G    A ++F +M ++    D  +   M+
Sbjct: 178 GLVGYARKVFDEITDRVTVSWNSMISGYSEAGRAKDAMDLFRKMEEEGFEPDERTLVSML 237

Query: 217 DGYRKKKGDISSARILFEHMPIKDLISWNS-----MIDGYAKIGDLVAAQQLFNEMPERN 271
            G     GD+++ R+L E M I   I  ++     +I  Y K GDL +A+++FN+M +++
Sbjct: 238 -GACAHLGDLTTGRLL-EKMAITKKIGLSTFLGSKLITMYGKCGDLDSARRVFNQMIKKD 295

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV 331
             +W+ MI  Y+Q+G   EA  LF EM   GV PD  ++   +SAC  VGAL+LGK I  
Sbjct: 296 RVAWNAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKRIET 355

Query: 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391
                 +  ++ V T L+DMY KCG ++EA R+F +M  KN  ++N MI      G  +E
Sbjct: 356 HASEISLQHNIYVATGLVDMYGKCGHIEEALRVFEAMPVKNEATWNAMITAYAHQGHAKE 415

Query: 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
           AL  F QM    +P  D+ F+GVL AC H+GL  +G R F  M    G+ PK+EHY+ ++
Sbjct: 416 ALLLFDQMP---VPPSDVTFIGVLSACVHAGLVDQGCRYFHEMSSLFGLVPKIEHYTNII 472

Query: 452 DLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK-ADDC 510
           DLLSRAG L++A   +E  P KP+  +   +L AC   ++V + E  +  L+E+K A + 
Sbjct: 473 DLLSRAGLLDEAWEFMERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEMKEAKNA 532

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
           G YV+ S + AD  MW+ + ++R +MR R + K  G S IEI+G + EF++G
Sbjct: 533 GNYVISSKVLADMKMWDESAKMRALMRDRGVVKTPGCSWIEINGELMEFLAG 584


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 183/567 (32%), Positives = 304/567 (53%), Gaps = 39/567 (6%)

Query: 41  ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFY 100
           I  P    +  M      +  +D A  LF  + + +    N M+   +QS   ++ALS  
Sbjct: 223 IERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVA 282

Query: 101 VNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC 160
           V+M  +G+ +D+ TY   L AC  L  L  G ++H +V++     D +V + ++ +Y+KC
Sbjct: 283 VDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKC 342

Query: 161 GHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMI 216
           G    AR VF     ++ VSW +++ GF++ G   ++ E+F++M  +    D  + + +I
Sbjct: 343 GCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATII 402

Query: 217 DGYRK----------------------------------KKGDISSARILFEHMPIKDLI 242
            G                                     K G++ +A  +F  M  +D++
Sbjct: 403 SGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIV 462

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ- 301
           SW  M+  Y+++G++  A++ F+ M  RNV +W+ M+  Y QHG  ++ L ++  ML + 
Sbjct: 463 SWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEK 522

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
            V PD ++ +     CA +GA  LG  I     +  + +D  V  A+I MY KCG + EA
Sbjct: 523 DVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEA 582

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
           R+IF  +++K+++S+N MI G   +G G++A++ F  M  +G   D + ++ VL +CSHS
Sbjct: 583 RKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHS 642

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           GL  EG   F  +KR   + P LEH+SC+VDLL+RAG L +A N+++ MPMKP   +WG 
Sbjct: 643 GLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGA 702

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           LL AC+ H N  LAE+  + L +L + D G Y+LL+ IYADAG    + ++RK+MR + I
Sbjct: 703 LLSACKTHGNNELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGI 762

Query: 542 KKETGRSVIEIDGNIKEFVSGEIFDVQ 568
           KK  G S +E+   +  F + ++   Q
Sbjct: 763 KKNPGYSWMEVKNKVHVFKAEDVSHPQ 789



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 125/521 (23%), Positives = 230/521 (44%), Gaps = 75/521 (14%)

Query: 41  ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFY 100
           ITEP  ++  +M        ++  AE LF ++ + +    NT++ GY QS     A+  +
Sbjct: 90  ITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESF 149

Query: 101 VNMKRKGLLVDN-YTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSK 159
           V+M+R G  + N +T+   +K+CG L       ++ G + K GF  D  V  G++ M+ +
Sbjct: 150 VSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVR 209

Query: 160 CGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMID-- 217
           CG +  A   F   E   +   N +L G+ +   +  A E+F+ MP++D +SW++M+   
Sbjct: 210 CGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSAL 269

Query: 218 -------------------GYRKKKGDISSARI-----------------LFEHMPIKDL 241
                              G R      +S+                   +   +P  D 
Sbjct: 270 SQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDP 329

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
              ++M++ YAK G    A+++F+ + +RN  SW+++I G+ Q+G   E+L LF +M  +
Sbjct: 330 YVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAE 389

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
            +  D  ++   IS C+    + L + +H    +S  T  +++  +LI MY KCG+L  A
Sbjct: 390 LMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNA 449

Query: 362 RRIFYS-------------------------------MTKKNVISYNVMIAGLGMNGFGE 390
             IF S                               M+ +NVI++N M+     +G  E
Sbjct: 450 ESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEE 509

Query: 391 EALKCFAQMETEG--IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
           + LK ++ M TE   IP D + ++ +   C+  G    G +I     +  G+       +
Sbjct: 510 DGLKMYSAMLTEKDVIP-DWVTYVTLFRGCADMGANKLGDQITGHTVK-VGLILDTSVMN 567

Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
            ++ + S+ G + +A  I + +  K +L  W  ++     H
Sbjct: 568 AVITMYSKCGRISEARKIFDFLSRK-DLVSWNAMITGYSQH 607



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 118/456 (25%), Positives = 199/456 (43%), Gaps = 73/456 (16%)

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS---- 173
            L++CG    L     +HG +V +G    VF+ N L+  Y  CG +  AR +  G     
Sbjct: 34  ALRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEP 93

Query: 174 ----------------------------EIKDLVSWNLVLRGFVECGEMGKAREVF---- 201
                                         +D+ SWN ++ G+ + G    A E F    
Sbjct: 94  NVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMR 153

Query: 202 ---DEMPQK----------DAISW---SIMIDGYRKKKG-----DISS------------ 228
              D +P             A+ W   ++ + G   K G     D+++            
Sbjct: 154 RSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAV 213

Query: 229 --ARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
             A   F  +    +   NSM+ GYAK   +  A +LF  MPER+V SW++M+   +Q G
Sbjct: 214 DFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSG 273

Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
             +EAL +  +M  +GVR D  +   +++ACA++ +L  GK +H  + RS   +D  V +
Sbjct: 274 RAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVAS 333

Query: 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK 406
           A++++Y KCG   EARR+F S+  +N +S+ V+I G    G   E+L+ F QM  E +  
Sbjct: 334 AMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTV 393

Query: 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466
           D      ++  CS+  +     R   S+    G    +   + L+ + ++ G L+ A +I
Sbjct: 394 DQFALATIISGCSNR-MDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESI 452

Query: 467 VESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
             SM  + ++  W  +L A     N+  A    +G+
Sbjct: 453 FSSMEER-DIVSWTGMLTAYSQVGNIGKAREFFDGM 487


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 164/434 (37%), Positives = 264/434 (60%), Gaps = 1/434 (0%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           DV   N ++  Y++ G M  AR +F+ + ++D+ +W  V+ G+ + G + +AR VFD MP
Sbjct: 223 DVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP 282

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
           +++A+SW+ M+  Y +++  +  A+ LF  MP +++ SWN+M+ GYA+ G L  A+ +F+
Sbjct: 283 ERNAVSWNAMVAAYIQRRM-MDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD 341

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
            MP+++  SW+ M+  Y+Q G  +E L LF EM   G   +  +    +S CA + AL+ 
Sbjct: 342 TMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALEC 401

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
           G  +H  + R+   +   V  AL+ MY KCG++++AR  F  M +++V+S+N MIAG   
Sbjct: 402 GMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYAR 461

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           +GFG+EAL+ F  M T     DD+  +GVL ACSHSGL  +G   F SM    G+  K E
Sbjct: 462 HGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPE 521

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
           HY+C++DLL RAG L +A ++++ MP +P+  +WG LL A R H+N  L     E + EL
Sbjct: 522 HYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFEL 581

Query: 506 KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIF 565
           + ++ G+YVLLSNIYA +G W  A ++R MM +R +KK  G S IE+   +  F +G+  
Sbjct: 582 EPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCV 641

Query: 566 DVQSEELELVIQSF 579
             + E++   ++  
Sbjct: 642 HPEKEKIYAFLEDL 655



 Score =  181 bits (460), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 125/431 (29%), Positives = 213/431 (49%), Gaps = 29/431 (6%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            AERLF  + + +T  +N M+ GY+ +     A S +  + R     DNY+Y  +L A  
Sbjct: 56  DAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRP----DNYSYNTLLHALA 111

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
           V   L +   +  E+     + D    N +I  ++  G +  AR  F+ +  KD VSWN 
Sbjct: 112 VSSSLADARGLFDEMP----VRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNG 167

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243
           +L  +V  G + +AR +F+   + D ISW+ ++ GY  + G +S AR LF+ MP +D++S
Sbjct: 168 MLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGY-VQWGKMSEARELFDRMPGRDVVS 226

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
           WN M+ GYA+ GD+V A++LF+  P R+VF+W+ ++ GYAQ+G  +EA  +F  M  +  
Sbjct: 227 WNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER-- 284

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
             + +S    ++A  Q   +D  K +   M       ++     ++  Y + G L+EA+ 
Sbjct: 285 --NAVSWNAMVAAYIQRRMMDEAKELFNMMP----CRNVASWNTMLTGYAQAGMLEEAKA 338

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS---- 419
           +F +M +K+ +S+  M+A     G  EE L+ F +M   G   +   F  VL  C+    
Sbjct: 339 VFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAA 398

Query: 420 -HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
              G+   G  I       C +       + L+ +  + G +E A N  E M  + ++  
Sbjct: 399 LECGMQLHGRLIRAGYGVGCFVG------NALLAMYFKCGNMEDARNAFEEMEER-DVVS 451

Query: 479 WGTLLLACRNH 489
           W T++     H
Sbjct: 452 WNTMIAGYARH 462



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 148/308 (48%), Gaps = 21/308 (6%)

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           +++  N  +   +  G +  A  +F  MP++   +++ M+ GY    G +  A  LF  +
Sbjct: 37  EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGY-SANGRLPLAASLFRAI 95

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
           P  D  S+N+++   A    L  A+ LF+EMP R+  ++++MI  +A HG     + L R
Sbjct: 96  PRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHG----LVSLAR 151

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
                    D +S  G ++A  + G ++  + +      SR   D+I   AL+  Y++ G
Sbjct: 152 HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF----NSRTEWDVISWNALMSGYVQWG 207

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP-KDDLIFLGVL 415
            + EAR +F  M  ++V+S+N+M++G    G   EA + F     +  P +D   +  V+
Sbjct: 208 KMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF-----DAAPVRDVFTWTAVV 262

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
              + +G+  E  R+F +M     +      ++ +V    +   +++A  +   MP + N
Sbjct: 263 SGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAYIQRRMMDEAKELFNMMPCR-N 316

Query: 476 LALWGTLL 483
           +A W T+L
Sbjct: 317 VASWNTML 324



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 9/237 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +++A+ +F+ + Q +      M+  Y+Q    ++ L  ++ M R G  V+   +  VL  
Sbjct: 333 LEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLST 392

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  +  L  G ++HG +++ G+    FV N L+ MY KCG+M  AR+ FE  E +D+VSW
Sbjct: 393 CADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSW 452

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR---KKKGDISSARILFEHMPI 238
           N ++ G+   G   +A E+FD M         I + G        G +      F  M  
Sbjct: 453 NTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHH 512

Query: 239 KDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPK 289
              ++     +  MID   + G L  A  L  +MP E +   W  ++     H NP+
Sbjct: 513 DFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPE 569



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 124/274 (45%), Gaps = 43/274 (15%)

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           ++I  N  I  + + G +  A++LF  MP R+  +++ M+ GY+ +G    A  LFR + 
Sbjct: 37  EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAI- 95

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK-RSRITMDMIVQT------------ 346
               RPD  S    + A A   +L   + +   M  R  +T ++++ +            
Sbjct: 96  ---PRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARH 152

Query: 347 --------------ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
                          ++  Y++ G ++EAR +F S T+ +VIS+N +++G    G   EA
Sbjct: 153 YFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEA 212

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIA-CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
            + F +M     P  D++   ++++  +  G   E  R+F +          +  ++ +V
Sbjct: 213 RELFDRM-----PGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR-----DVFTWTAVV 262

Query: 452 DLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
              ++ G LE+A  + ++MP + N   W  ++ A
Sbjct: 263 SGYAQNGMLEEARRVFDAMPER-NAVSWNAMVAA 295



 Score = 42.0 bits (97), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 11/153 (7%)

Query: 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF 396
           R+  ++I     I  +M+ G + +A R+F +M +++  +YN M+AG   NG    A   F
Sbjct: 33  RLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLF 92

Query: 397 AQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
                  IP+ D+  +  +L A + S    +   +F  M     +      Y+ ++   +
Sbjct: 93  -----RAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVT-----YNVMISSHA 142

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
             G +  A +  +  P K  ++  G L    RN
Sbjct: 143 NHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN 175



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 40/224 (17%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           NM+ A   F ++ + +    NTMI GY +    ++AL  +  M+      D+ T   VL 
Sbjct: 433 NMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLA 492

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC            H  +V+ G +   + ++   G+ +K  H  C         + DL+ 
Sbjct: 493 ACS-----------HSGLVEKG-ISYFYSMHHDFGVTAKPEHYTC---------MIDLLG 531

Query: 181 WNLVLRGFVECGEMGKAREVFDEMP-QKDAISWSIMIDG---YRKKKGDISSARILFEHM 236
                      G + +A ++  +MP + D+  W  ++     +R  +   S+A  +FE  
Sbjct: 532 ---------RAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELE 582

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV-----FSW 275
           P ++   +  + + YA  G    A+++   M ER V     FSW
Sbjct: 583 P-ENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSW 625


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 178/475 (37%), Positives = 281/475 (59%), Gaps = 10/475 (2%)

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           M R G+  DN+T+PF++KAC  L     G  IH +VVK G+   VF+ N LI MY KC  
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM------PQKDAISWSIMI 216
              +R VF+    K+ VSW+ ++   ++     +   +F +M      P + AI  ++  
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMAC 120

Query: 217 DGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
               ++  D+   R++ E+    D    ++    +A+ G +  A++LF+ +  +++ +W+
Sbjct: 121 VRSHEEADDVY--RVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWA 178

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS 336
             I+ Y +   P EAL L ++M+ QG+ PD I+++G I AC+ + +  L   +H  +   
Sbjct: 179 TTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTG 238

Query: 337 RITMDMI-VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
                ++ V+TALID+Y+KCGSL  AR++F  M ++N+I+++ MI+G GM+G+G EAL  
Sbjct: 239 FFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNL 298

Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           F QM+    P D + F+ +L ACSHSGL  EG+  F SM R  G+ P+ EHY+C+VD+L 
Sbjct: 299 FDQMKASVKP-DHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILG 357

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515
           RAG+L++A + +E MP++PN A+WG LL ACR H NV LAE+V   L +L   + G YV+
Sbjct: 358 RAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVI 417

Query: 516 LSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570
           L NIY   G  + A  IR +M+ R +KK  G SVIEI   +  FV+G+    Q++
Sbjct: 418 LYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTD 472



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 13/234 (5%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A +LF+ I   +     T I  Y ++  P +AL     M  +G+  D  T   V++AC  
Sbjct: 162 ARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACST 221

Query: 125 LMGLVEGTEIHGEVVKMGFLCD--VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
           L        +HG ++  GF  +  + V   LI +Y KCG +  AR VF+G + +++++W+
Sbjct: 222 LASFQLAHIVHG-IITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWS 280

Query: 183 LVLRGFVECGEMGKAREVFDEMP---QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239
            ++ G+   G   +A  +FD+M    + D I++  ++       G ++     F  M   
Sbjct: 281 AMISGYGMHGWGREALNLFDQMKASVKPDHITFVSILSAC-SHSGLVAEGWECFNSMARD 339

Query: 240 DLIS-----WNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQHGN 287
             ++     +  M+D   + G L  A      MP R N   W  ++     H N
Sbjct: 340 FGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLN 393


>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
 gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
 gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
          Length = 530

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 177/513 (34%), Positives = 288/513 (56%), Gaps = 40/513 (7%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N +IR   +  +  + ++ Y +++ +GL+ D++TYPFVL+A GVL   VEG + H   VK
Sbjct: 18  NVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAVK 77

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
            GF  D +  + L+ MY+  G +  AR VF+    + LV WN+++R ++ CG    A  +
Sbjct: 78  TGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAVAL 137

Query: 201 FDEM------PQKDAISWSI--------------------------------MIDGYRKK 222
            ++M      P +  +  ++                                ++D Y K 
Sbjct: 138 SEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGFNLPVANALLDMYTKN 197

Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
              +  A  LFE MP +++ISW  ++ GY   G L  A+ LFN+  E+++  W+ MI+  
Sbjct: 198 DC-LEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINAC 256

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
            QHG  +EAL LFR+M  Q V PD  +V+  ++ CA +GALD G+WIH + ++ ++ +D 
Sbjct: 257 VQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDA 316

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
           ++ TALIDMY KCG ++++  +F+ M  ++  ++  +I GL  NG    AL+ F  M+  
Sbjct: 317 VLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRS 376

Query: 403 GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
            +  D + F+GVL AC H GL  EG + F +M+    IEP++EHYSCLV+LL RAG L++
Sbjct: 377 KVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAGLLDE 436

Query: 463 ALNIVESMPM-KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521
           A  ++  +P+ K  + L+G LL AC+ H NV ++E + + + E  +    + +L+SN+YA
Sbjct: 437 AERLIGDVPINKDAMPLFGALLTACKAHGNVEMSERLTKRICEQDSQITDVNLLMSNVYA 496

Query: 522 DAGMWEHALRIRKMMRKRKIKKETGRSVIEIDG 554
            A  WE  +R+R  M    +KK  G S+IE+ G
Sbjct: 497 TASRWEDVIRVRGKMAHPTVKKNAGCSLIEVKG 529



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 158/344 (45%), Gaps = 42/344 (12%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            +D A ++F+++      + N M+R Y +      A++    M+R G+  D  T    + 
Sbjct: 99  RVDIARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAVALSEQMERSGVTPDRVTLVTAVT 158

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC     L  G  IH  +  + F  ++ V N L+ MY+K   +  A  +FE    ++++S
Sbjct: 159 ACSRARDLSLGRRIHVYMDNV-FGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIIS 217

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK- 239
           W +++ G+   G++ KAR +F++  +KD I W+ MI+    + G    A  LF  M ++ 
Sbjct: 218 WTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINAC-VQHGCFEEALTLFRDMQMQR 276

Query: 240 --------------------------------------DLISWNSMIDGYAKIGDLVAAQ 261
                                                 D +   ++ID Y+K G +  + 
Sbjct: 277 VEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKCGHIEKSL 336

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
           ++F  M  R+  +W+ +I G A +G    AL LF++M    V+PD ++ +G +SAC   G
Sbjct: 337 EVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDGVTFIGVLSACCHGG 396

Query: 322 ALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
            +D G K  H   +  +I   +   + L+++  + G LDEA R+
Sbjct: 397 LVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAGLLDEAERL 440


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 186/494 (37%), Positives = 289/494 (58%), Gaps = 31/494 (6%)

Query: 114 TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS 173
           TY  VL+ C  L  + +G  IH  +       D  + + L+ MY  CG +   R +F+  
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 174 EIKDLVSWNLVLRGFVECG-------------EMG-----KAREVFDEMPQKDAISWSIM 215
             + +  WNL++ G+ + G             E+G      AR++FDE+  +D ISW+ M
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSM 222

Query: 216 IDGYRKKKGDISSARILFEHMPI----KDLISW--------NSMIDGYAKIGDLVAAQQL 263
           I GY    G       LFE M +     DL +         N ++D Y+K G+L +A Q+
Sbjct: 223 ISGY-VSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQV 281

Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL 323
           F  M ER+V SW+ MI GYA+ G    ++ LF EM  + + P+ I++   + ACA + AL
Sbjct: 282 FETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAAL 341

Query: 324 DLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383
           + G+ IH  + R+  ++D  V  AL+DMY+KCG+L  AR +F  + +K+++S+ VMIAG 
Sbjct: 342 ERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGY 401

Query: 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443
           GM+G+G EA+  F +M   GI  D++ F+ +L ACSHSGL  EG+  F  M+ +C IEPK
Sbjct: 402 GMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPK 461

Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLV 503
            EHY+C+VDLL+RAG L +A   ++ MP++P+  +WG LL  CR + +V LAE V E + 
Sbjct: 462 SEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVF 521

Query: 504 ELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           EL+ ++ G YVLL+NIYA+A  WE   ++R+ + +R ++K  G S IEI G +  FV+G+
Sbjct: 522 ELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGD 581

Query: 564 IFDVQSEELELVIQ 577
                + ++EL+++
Sbjct: 582 SSHPLANKIELLLK 595



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 174/371 (46%), Gaps = 36/371 (9%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           +I + + +ND+  +    S+L+    +   L   +  R+F+++     ++ N ++ GY +
Sbjct: 122 RIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLR--EGRRIFDKVANEKVFLWNLLMNGYAK 179

Query: 90  SSNPQKALSFYVNMKRKGL--------LVDNYTYPFVLKACGVLMGLV------EGTEIH 135
             N +++LS +  M+  G+        L D      V+    ++ G V      +G ++ 
Sbjct: 180 IGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLF 239

Query: 136 GEVVKMGFLCDVFVV--------NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
            +++ +G   D+  +        N L+ MYSK G++  A  VFE    + +VSW  ++ G
Sbjct: 240 EQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAG 299

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK--------KKGDISSARILFEHMPIK 239
           +   G    +  +F EM ++D    SI +             ++G      IL     + 
Sbjct: 300 YAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLD 359

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
             ++ N+++D Y K G L  A+ LF+ +PE+++ SW++MI GY  HG   EA+  F EM 
Sbjct: 360 RHVA-NALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMR 418

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ--TALIDMYMKCGS 357
             G+ PD +S +  + AC+  G LD G W    M R+   ++   +    ++D+  + G+
Sbjct: 419 NSGIEPDEVSFISILYACSHSGLLDEG-WGFFNMMRNNCCIEPKSEHYACIVDLLARAGN 477

Query: 358 LDEARRIFYSM 368
           L +A +    M
Sbjct: 478 LSKAYKFIKMM 488



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 125/264 (47%), Gaps = 14/264 (5%)

Query: 28  ILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGY 87
           +L I   L T  +++   TL+  L+ + S +  N++ A ++F  + + +     +MI GY
Sbjct: 244 LLGINTDLAT--MVSVELTLNNCLLDMYSKSG-NLNSAIQVFETMGERSVVSWTSMIAGY 300

Query: 88  TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV 147
            +      ++  +  M+++ L  ++ T   +L AC  L  L  G EIHG +++ GF  D 
Sbjct: 301 AREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDR 360

Query: 148 FVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP-- 205
            V N L+ MY KCG +G AR +F+    KDLVSW +++ G+   G   +A   F+EM   
Sbjct: 361 HVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNS 420

Query: 206 --QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNS-----MIDGYAKIGDLV 258
             + D +S+ I I       G +      F  M     I   S     ++D  A+ G+L 
Sbjct: 421 GIEPDEVSF-ISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLS 479

Query: 259 AAQQLFNEMP-ERNVFSWSIMIDG 281
            A +    MP E +   W  ++ G
Sbjct: 480 KAYKFIKMMPIEPDATIWGALLCG 503


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 176/501 (35%), Positives = 300/501 (59%), Gaps = 9/501 (1%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           + +A + F+ + + N      M+RGY Q     +A + +  M  K ++    ++  +L  
Sbjct: 94  VSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVV----SWTVML-- 147

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
            G L+ +    E  G +  +  + DV     +I  Y + G +  AR +F+    ++++SW
Sbjct: 148 -GGLIQVRRIDEARG-LFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISW 205

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
             ++ G+V+ G++  AR++F+ MP+K+ +SW+ M+ GY  + G I  A  LF+ MP+K +
Sbjct: 206 TTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGY-TQGGRIEEASELFDAMPVKAV 264

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
           ++ N+MI G+ + G++  A+Q+F+++ E++  +WS MI  Y + G   EAL LF  M  +
Sbjct: 265 VACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQRE 324

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
           GV+ +  S++  +S CA + +LD G+ +H  + +S+   D+ V + LI MY+KCG L +A
Sbjct: 325 GVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKA 384

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
           R+IF   + K+++ +N +I G   +G  EEAL+ F +M + G+  D + F+GVL ACS++
Sbjct: 385 RQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYT 444

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           G   EG  IF+SMK    +EPK EHY+C+VDLL RAG +  A+++++ MP++ +  +WG 
Sbjct: 445 GKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGA 504

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           LL ACR H N+ LAEV  + L++L+  + G Y+LLSNIYA  G W     +R+ MR +K+
Sbjct: 505 LLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELRRNMRVKKV 564

Query: 542 KKETGRSVIEIDGNIKEFVSG 562
            K  G S IE++  +  F  G
Sbjct: 565 SKSPGCSWIEVEKRVHMFTGG 585



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/320 (30%), Positives = 166/320 (51%), Gaps = 18/320 (5%)

Query: 151 NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAI 210
           N  I  Y++ G +  AR VF+    K +VSWN ++ G+ +     +AR +FD+MP+++ +
Sbjct: 20  NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTV 79

Query: 211 SWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER 270
           SW+ +I GY K +  +S AR  F+ MP ++++SW +M+ GY + G +  A+ LF +MPE+
Sbjct: 80  SWNGLISGYVKNRM-VSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEK 138

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           NV SW++M+ G  Q     EA  LF  M  +    DV++    IS   Q G L   + + 
Sbjct: 139 NVVSWTVMLGGLIQVRRIDEARGLFDIMPVK----DVVARTNMISGYCQEGRLAEARELF 194

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
             M R  +    I  T +I  Y++ G +D AR++F  M +KN +S+  M+ G    G  E
Sbjct: 195 DEMPRRNV----ISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIE 250

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
           EA + F  M  + +   + + LG       +G   +  ++F  ++     E     +S +
Sbjct: 251 EASELFDAMPVKAVVACNAMILGF----GQNGEVAKARQVFDQIR-----EKDDGTWSAM 301

Query: 451 VDLLSRAGELEQALNIVESM 470
           + +  R G   +ALN+   M
Sbjct: 302 IKVYERKGFEVEALNLFALM 321



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 134/256 (52%), Gaps = 13/256 (5%)

Query: 179 VSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI 238
           +++N  +  +   G++  AR VFDEMP K  +SW+ M+ GY +       AR LF+ MP 
Sbjct: 17  IAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRP-REARYLFDKMPE 75

Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
           ++ +SWN +I GY K   +  A++ F+ MPERNV SW+ M+ GY Q G   EA  LF +M
Sbjct: 76  RNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQM 135

Query: 299 LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
                  +V+S    +    QV  +D  + +   M       D++ +T +I  Y + G L
Sbjct: 136 ----PEKNVVSWTVMLGGLIQVRRIDEARGLFDIMP----VKDVVARTNMISGYCQEGRL 187

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
            EAR +F  M ++NVIS+  MI+G   NG  + A K F  M      K+++ +  +L+  
Sbjct: 188 AEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPE----KNEVSWTAMLMGY 243

Query: 419 SHSGLATEGYRIFQSM 434
           +  G   E   +F +M
Sbjct: 244 TQGGRIEEASELFDAM 259



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 10/149 (6%)

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
           R   T   I   + I  Y + G ++ ARR+F  M  K ++S+N M+AG   N    EA  
Sbjct: 9   RRYCTSVAIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARY 68

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
            F +M      ++ + + G++     + + +E  + F +M      E  +  ++ +V   
Sbjct: 69  LFDKMPE----RNTVSWNGLISGYVKNRMVSEARKAFDTMP-----ERNVVSWTAMVRGY 119

Query: 455 SRAGELEQALNIVESMPMKPNLALWGTLL 483
            + G + +A  +   MP K N+  W  +L
Sbjct: 120 VQEGLVSEAETLFWQMPEK-NVVSWTVML 147


>gi|225428117|ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial [Vitis vinifera]
          Length = 681

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 186/515 (36%), Positives = 296/515 (57%), Gaps = 41/515 (7%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           MD+A +LF+ + + N    N M+ G+ Q+ + ++A+ F++ M  +               
Sbjct: 178 MDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERD-------------- 223

Query: 122 CGVLMGLVEGTEIHGEV--VKMGFLCD----------VFVVNGLIGMYSKCGHMGCARSV 169
              L  LV G   +GE+   K   L            V   N L+  Y + G +  AR +
Sbjct: 224 SASLSALVAGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQL 283

Query: 170 FE------------GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMID 217
           F+            G   +++VSWN ++  +V+  ++  AR +FD+M ++D ISW+ MI 
Sbjct: 284 FDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMIS 343

Query: 218 GYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSI 277
           GY  +  D+  A +LF+ MP  D ++WNSMI G+A+ G+L  A+ LF  +P++N+ SW+ 
Sbjct: 344 GY-VRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNS 402

Query: 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337
           MI GY  +G+ K A  L+R+ML QG +PD  ++   +S C+   AL LG  IH  + ++ 
Sbjct: 403 MIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTV 462

Query: 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNGFGEEALKCF 396
           I  D+ +  +LI MY +CG++ EAR IF  +  +K VIS+N MI G   +GF  +AL+ F
Sbjct: 463 IP-DIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELF 521

Query: 397 AQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456
             M+   +    + F+ VL AC+H+G   EG   F+SM    GIEP++EH++ LVD++ R
Sbjct: 522 ELMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGR 581

Query: 457 AGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLL 516
            G+LE+A++++ SMP +P+ A+WG LL ACR H NV LA V  E L++L+ +    YVLL
Sbjct: 582 HGQLEEAMDLINSMPFEPDKAVWGALLGACRVHNNVELARVAAEALMKLEPESSAPYVLL 641

Query: 517 SNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
            N+YAD G W++A  +R MM +  I+K+ G S ++
Sbjct: 642 HNMYADVGQWDNATEMRMMMERNNIRKQPGYSWVD 676



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 182/361 (50%), Gaps = 33/361 (9%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D++  N  I    + G +  AR++F+    +++V+WN ++ G+V   EM KAR++FDEMP
Sbjct: 66  DLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMP 125

Query: 206 QKDAISWSIMIDGYRKKKGD-ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
            +D +SW++MI GY   +G  +   R LF+ MP +D +SWN+MI GY + G +  A QLF
Sbjct: 126 DRDVVSWNLMISGYVSCQGRWVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLF 185

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
           + M ERNV SW+ M+ G+ Q+G+ + A+  F  M  +    D  S+   ++   Q G LD
Sbjct: 186 DSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPER----DSASLSALVAGLIQNGELD 241

Query: 325 LGKWIHVFMKRSRITMDMIVQ--TALIDMYMKCGSLDEARRIFYSMT------------K 370
             K I +  +R       +V     L+  Y + G +D+AR++F  +             +
Sbjct: 242 EAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFE 301

Query: 371 KNVISYNVMIAGL--GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
           +NV+S+N MI       + F    L  F QM+     +D + +  ++          E +
Sbjct: 302 RNVVSWNSMIMCYVKARDIFSARVL--FDQMKE----RDTISWNTMISGYVRMSDMEEAW 355

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
            +FQ M       P    ++ ++   ++ G LE A  +  ++P K NL  W +++    N
Sbjct: 356 MLFQEMP-----NPDTLTWNSMISGFAQKGNLELARALFATIPQK-NLVSWNSMIAGYEN 409

Query: 489 H 489
           +
Sbjct: 410 N 410



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 117/261 (44%), Gaps = 24/261 (9%)

Query: 50  LLMSLTSPNTL-------------NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKA 96
           L   + +P+TL             N++ A  LF  I Q N    N+MI GY  + + + A
Sbjct: 357 LFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGA 416

Query: 97  LSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGM 156
              Y  M  +G   D +T   VL  C     L  G +IH ++ K   + D+ + N LI M
Sbjct: 417 TELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKT-VIPDIPINNSLITM 475

Query: 157 YSKCGHMGCARSVFEGSEI-KDLVSWNLVLRGFVECGEMGKAREVFDEMPQ---KDAISW 212
           YS+CG +  AR++F+  ++ K+++SWN ++ G+   G    A E+F+ M +   +     
Sbjct: 476 YSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYIT 535

Query: 213 SIMIDGYRKKKGDISSARILFEHMPIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEM 267
            I +       G +   R+ F+ M  +  I      + S++D   + G L  A  L N M
Sbjct: 536 FISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSM 595

Query: 268 P-ERNVFSWSIMIDGYAQHGN 287
           P E +   W  ++     H N
Sbjct: 596 PFEPDKAVWGALLGACRVHNN 616



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 101/211 (47%), Gaps = 15/211 (7%)

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
           ++ +++D+      I   ++ G ++EAR +F +M ++N++++N MI G        +A K
Sbjct: 60  KNSVSLDLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARK 119

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM-KRHCGIEPKLEHYSCLVDL 453
            F +M    +   +L+  G  ++C       EG  +F  M +R C        ++ ++  
Sbjct: 120 LFDEMPDRDVVSWNLMISG-YVSC-QGRWVEEGRHLFDEMPERDC------VSWNTMISG 171

Query: 454 LSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL-KADDCGL 512
            +R+G +++AL + +SM  + N+  W  ++     + +V   E  +E  + + + D   L
Sbjct: 172 YTRSGRMDEALQLFDSMQER-NVVSWNAMVTGFLQNGDV---ERAIEFFMRMPERDSASL 227

Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
             L++ +  + G  + A RI    R++   K
Sbjct: 228 SALVAGLIQN-GELDEAKRILLTSRRQDDDK 257


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  337 bits (865), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 188/540 (34%), Positives = 302/540 (55%), Gaps = 38/540 (7%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D   R+F+++ + N     ++I GY +    ++A+S +  M   G+  ++ T   V+ A
Sbjct: 190 IDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISA 249

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G ++   + ++    +  +VN L+ MY KCG +  AR +F+    K+LV +
Sbjct: 250 CAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLY 309

Query: 182 NLVLRGFVECGEMGKAREVFDEM----PQKD------AISWSIMID---------GYRKK 222
           N ++  +V  G   +   V  EM    P+ D      A+S    +D         GY  +
Sbjct: 310 NTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLR 369

Query: 223 KG-----DISSARI--------------LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQL 263
            G     ++ +A I              +F+ M  K  +SWNS+I G+ + GD+ +A ++
Sbjct: 370 NGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKI 429

Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL 323
           F+ MP+ ++ SW+ MI    Q    KEA+ LFR M  +G+  D ++++G  SAC  +GAL
Sbjct: 430 FSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGAL 489

Query: 324 DLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383
           DL KWIH ++K+  I  DM + TAL+DM+ +CG    A ++F  M K++V ++   I  +
Sbjct: 490 DLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAM 549

Query: 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443
            M G G  A++ F +M  +GI  D ++F+ +L A SH GL  +G+ IF+SMK   GI P+
Sbjct: 550 AMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQ 609

Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLV 503
             HY C+VDLL RAG L +AL+++ SM M+PN  +WG+LL ACR H+NV +A    E + 
Sbjct: 610 AVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERIS 669

Query: 504 ELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           EL  +  G++VLLSNIYA AG W+   ++R  ++++   K  G S IEI+G I EF +G+
Sbjct: 670 ELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGD 729



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 161/561 (28%), Positives = 278/561 (49%), Gaps = 49/561 (8%)

Query: 23  KTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL-NMDQAERLFNQIYQPN----- 76
           KT T + Q+ +Q+T N L   P +L+ L+ S T   T  +++ A++      + N     
Sbjct: 44  KTMTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGT 103

Query: 77  TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHG 136
            YM +++IRG++      KA+  +  +   G + DN+T+PFVL AC     L EG ++HG
Sbjct: 104 HYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHG 163

Query: 137 EVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGK 196
            +VKMGF  D+FV N LI  Y +CG + C R VF+    +++VSW  ++ G+ + G   +
Sbjct: 164 AIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKE 223

Query: 197 AREVFDEMPQ----KDAISWSIMIDGYRK----KKGDISSARILFEHMPIKDLISWNSMI 248
           A  +F EM +     ++++   +I    K    + G+     I    + +  L+  N+++
Sbjct: 224 AVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMV-NALV 282

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
           D Y K G +  A+++F+E  ++N+  ++ ++  Y + G  +E L +  EML  G RPD I
Sbjct: 283 DMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRI 342

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           +++ A+SAC+++  +  GKW H ++ R+ +     V  A+I+MYMKCG  + A R+F  M
Sbjct: 343 TMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRM 402

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQ------------------------------ 398
             K  +S+N +IAG   NG  E A K F+                               
Sbjct: 403 LNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFR 462

Query: 399 -METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA 457
            M++EGI  D +  +GV  AC + G       I   +K+   I   +   + LVD+ +R 
Sbjct: 463 VMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKK-DIHFDMHLGTALVDMFARC 521

Query: 458 GELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLA-EVVVEGLVELKADDCGLYVLL 516
           G+ + A+ +   M +K +++ W   + A     N T A E+  E L +    D  ++V L
Sbjct: 522 GDPQSAMQVFNKM-VKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVAL 580

Query: 517 SNIYADAGMWEHALRIRKMMR 537
               +  G+ E    I + M+
Sbjct: 581 LTALSHGGLVEQGWHIFRSMK 601



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 103/245 (42%), Gaps = 15/245 (6%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +M+ A ++F+ +   +    NTMI    Q S  ++A+  +  M+ +G+  D  T   V  
Sbjct: 422 DMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVAS 481

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           ACG L  L     IHG + K     D+ +   L+ M+++CG    A  VF     +D+ +
Sbjct: 482 ACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSA 541

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHM 236
           W   +      G    A E+FDEM Q+    D + +  ++       G +     +F  M
Sbjct: 542 WTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTAL-SHGGLVEQGWHIFRSM 600

Query: 237 PIKDL-------ISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNP 288
             KD+       + +  M+D   + G L  A  L N M  E N   W  ++     H N 
Sbjct: 601 --KDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNV 658

Query: 289 KEALY 293
             A Y
Sbjct: 659 DIAAY 663


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 164/434 (37%), Positives = 264/434 (60%), Gaps = 1/434 (0%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           DV   N ++  Y++ G M  AR +F+ + ++D+ +W  V+ G+ + G + +AR VFD MP
Sbjct: 223 DVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP 282

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
           +++A+SW+ M+  Y +++  +  A+ LF  MP +++ SWN+M+ GYA+ G L  A+ +F+
Sbjct: 283 ERNAVSWNAMVAAYIQRRM-MDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD 341

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
            MP+++  SW+ M+  Y+Q G  +E L LF EM   G   +  +    +S CA + AL+ 
Sbjct: 342 TMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALEC 401

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
           G  +H  + R+   +   V  AL+ MY KCG++++AR  F  M +++V+S+N MIAG   
Sbjct: 402 GMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYAR 461

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           +GFG+EAL+ F  M T     DD+  +GVL ACSHSGL  +G   F SM    G+  K E
Sbjct: 462 HGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPE 521

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
           HY+C++DLL RAG L +A ++++ MP +P+  +WG LL A R H+N  L     E + EL
Sbjct: 522 HYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFEL 581

Query: 506 KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIF 565
           + ++ G+YVLLSNIYA +G W  A ++R MM +R +KK  G S IE+   +  F +G+  
Sbjct: 582 EPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCV 641

Query: 566 DVQSEELELVIQSF 579
             + E++   ++  
Sbjct: 642 HPEKEKIYAFLEDL 655



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/431 (29%), Positives = 214/431 (49%), Gaps = 29/431 (6%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            AERLF  + + +T  +N M+ GY+ +     A S +  + R     DNY+Y  +L A  
Sbjct: 56  DAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRP----DNYSYNTLLHALA 111

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
           V   L +   +  E+     + D    N +I  ++  G +  AR  F+ +  KD VSWN 
Sbjct: 112 VSSSLADARGLFDEMP----VRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNG 167

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243
           +L  +V  G + +AR +F+   + DAISW+ ++ GY  + G +S AR LF+ MP +D++S
Sbjct: 168 MLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGY-VQWGKMSEARELFDRMPGRDVVS 226

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
           WN M+ GYA+ GD+V A++LF+  P R+VF+W+ ++ GYAQ+G  +EA  +F  M  +  
Sbjct: 227 WNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER-- 284

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
             + +S    ++A  Q   +D  K +   M       ++     ++  Y + G L+EA+ 
Sbjct: 285 --NAVSWNAMVAAYIQRRMMDEAKELFNMMP----CRNVASWNTMLTGYAQAGMLEEAKA 338

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS---- 419
           +F +M +K+ +S+  M+A     G  EE L+ F +M   G   +   F  VL  C+    
Sbjct: 339 VFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAA 398

Query: 420 -HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
              G+   G  I       C +       + L+ +  + G +E A N  E M  + ++  
Sbjct: 399 LECGMQLHGRLIRAGYGVGCFVG------NALLAMYFKCGNMEDARNAFEEMEER-DVVS 451

Query: 479 WGTLLLACRNH 489
           W T++     H
Sbjct: 452 WNTMIAGYARH 462



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 147/308 (47%), Gaps = 21/308 (6%)

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           +++  N  +   +  G +  A  +F  MP++   +++ M+ GY    G +  A  LF  +
Sbjct: 37  EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGY-SANGRLPLAASLFRAI 95

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
           P  D  S+N+++   A    L  A+ LF+EMP R+  ++++MI  +A HG     + L R
Sbjct: 96  PRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHG----LVSLAR 151

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
                    D +S  G ++A  + G ++  + +      SR   D I   AL+  Y++ G
Sbjct: 152 HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF----NSRTEWDAISWNALMSGYVQWG 207

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP-KDDLIFLGVL 415
            + EAR +F  M  ++V+S+N+M++G    G   EA + F     +  P +D   +  V+
Sbjct: 208 KMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF-----DAAPVRDVFTWTAVV 262

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
              + +G+  E  R+F +M     +      ++ +V    +   +++A  +   MP + N
Sbjct: 263 SGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAYIQRRMMDEAKELFNMMPCR-N 316

Query: 476 LALWGTLL 483
           +A W T+L
Sbjct: 317 VASWNTML 324



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 9/237 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +++A+ +F+ + Q +      M+  Y+Q    ++ L  ++ M R G  V+   +  VL  
Sbjct: 333 LEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLST 392

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  +  L  G ++HG +++ G+    FV N L+ MY KCG+M  AR+ FE  E +D+VSW
Sbjct: 393 CADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSW 452

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR---KKKGDISSARILFEHMPI 238
           N ++ G+   G   +A E+FD M         I + G        G +      F  M  
Sbjct: 453 NTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHH 512

Query: 239 KDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPK 289
              ++     +  MID   + G L  A  L  +MP E +   W  ++     H NP+
Sbjct: 513 DFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPE 569



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 123/274 (44%), Gaps = 43/274 (15%)

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           ++I  N  I  + + G +  A++LF  MP R+  +++ M+ GY+ +G    A  LFR + 
Sbjct: 37  EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAI- 95

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK-RSRITMDMIVQT------------ 346
               RPD  S    + A A   +L   + +   M  R  +T ++++ +            
Sbjct: 96  ---PRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARH 152

Query: 347 --------------ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
                          ++  Y++ G ++EAR +F S T+ + IS+N +++G    G   EA
Sbjct: 153 YFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEA 212

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIA-CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
            + F +M     P  D++   ++++  +  G   E  R+F +          +  ++ +V
Sbjct: 213 RELFDRM-----PGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR-----DVFTWTAVV 262

Query: 452 DLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
              ++ G LE+A  + ++MP + N   W  ++ A
Sbjct: 263 SGYAQNGMLEEARRVFDAMPER-NAVSWNAMVAA 295



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 11/153 (7%)

Query: 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF 396
           R+  ++I     I  +M+ G + +A R+F +M +++  +YN M+AG   NG    A   F
Sbjct: 33  RLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLF 92

Query: 397 AQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
                  IP+ D+  +  +L A + S    +   +F  M     +      Y+ ++   +
Sbjct: 93  -----RAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVT-----YNVMISSHA 142

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
             G +  A +  +  P K  ++  G L    RN
Sbjct: 143 NHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN 175



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 40/224 (17%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           NM+ A   F ++ + +    NTMI GY +    ++AL  +  M+      D+ T   VL 
Sbjct: 433 NMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLA 492

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC            H  +V+ G +   + ++   G+ +K  H  C         + DL+ 
Sbjct: 493 ACS-----------HSGLVEKG-ISYFYSMHHDFGVTAKPEHYTC---------MIDLLG 531

Query: 181 WNLVLRGFVECGEMGKAREVFDEMP-QKDAISWSIMIDG---YRKKKGDISSARILFEHM 236
                      G + +A ++  +MP + D+  W  ++     +R  +   S+A  +FE  
Sbjct: 532 ---------RAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELE 582

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV-----FSW 275
           P ++   +  + + YA  G    A+++   M ER V     FSW
Sbjct: 583 P-ENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSW 625


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 193/543 (35%), Positives = 309/543 (56%), Gaps = 31/543 (5%)

Query: 22  SKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHN 81
           S T T   + L  L       +   +S  L++L + N  ++  +   F+QI Q + Y  N
Sbjct: 28  SSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYA-NLGDVSLSRCTFDQIPQKDVYAWN 86

Query: 82  TMIRGYTQSSNPQKALS-FYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           +MI  Y  + +  +A+  FY  +    +  D YT+P VLKACG L   V+G +IH    K
Sbjct: 87  SMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTL---VDGRKIHCWAFK 143

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
           +GF  +VFV   LI MYS+ G  G ARS+F+    +D+ SWN ++ G ++ G   +A +V
Sbjct: 144 LGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDV 203

Query: 201 FDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAA 260
            DEM           ++G +     + S   +F              +D YAK+G L +A
Sbjct: 204 LDEM----------RLEGIKMNFVTVVSILPVF--------------VDMYAKLGLLDSA 239

Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML-CQGVRPDVISVMGAISACAQ 319
            ++F  +P ++V SW+ +I GYAQ+G   EA+ +++ M  C+ + P+  + +  + A A 
Sbjct: 240 HKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAH 299

Query: 320 VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVM 379
           VGAL  G  IH  + ++ + +D+ V T LID+Y KCG L +A  +FY + +++ +++N +
Sbjct: 300 VGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAI 359

Query: 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439
           I+  G++G  E+ LK F +M  EG+  D + F+ +L ACSHSG   EG   F+ M+ + G
Sbjct: 360 ISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEY-G 418

Query: 440 IEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVV 499
           I+P L+HY C+VDLL RAG LE A + ++ MP++P+ ++WG LL ACR H N+ L +   
Sbjct: 419 IKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFAS 478

Query: 500 EGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEF 559
           + L E+ + + G YVLLSNIYA+ G WE   ++R + R+R +KK  G S IE++  +  F
Sbjct: 479 DRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVF 538

Query: 560 VSG 562
            +G
Sbjct: 539 YTG 541



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 155/351 (44%), Gaps = 39/351 (11%)

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
           Q + I ++ + D   K         +L     ++ +     +++ YA +GD+  ++  F+
Sbjct: 16  QNEEIDFNFLFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFD 75

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFRE-MLCQGVRPDVISVMGAISACAQVGALD 324
           ++P+++V++W+ MI  Y  +G+  EA+  F + +L   +RPD  +    + AC   G L 
Sbjct: 76  QIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLV 132

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
            G+ IH +  +     ++ V  +LI MY + G    AR +F  M  +++ S+N MI+GL 
Sbjct: 133 DGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLI 192

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444
            NG   +AL    +M  EGI  + +  + +L                             
Sbjct: 193 QNGNAAQALDVLDEMRLEGIKMNFVTVVSIL----------------------------- 223

Query: 445 EHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE 504
                 VD+ ++ G L+ A  + E +P+K ++  W TL+     +   + A  V + + E
Sbjct: 224 ---PVFVDMYAKLGLLDSAHKVFEIIPVK-DVISWNTLITGYAQNGLASEAIEVYKMMEE 279

Query: 505 LKA--DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEID 553
            K    + G +V +   YA  G  +  ++I   + K  +  +   +   ID
Sbjct: 280 CKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLID 330


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 183/519 (35%), Positives = 297/519 (57%), Gaps = 9/519 (1%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           + +A  +F+ + + +    N MI GY +  + + A+  +  M  +G+  +  TY  +LKA
Sbjct: 79  LQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKA 138

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G E+H  +   G   DV V   L+ MY KCG +  AR +F+     D++SW
Sbjct: 139 CASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISW 198

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMP 237
            +++  + + G   +A  +  +M Q+    +AI++  +++     +G +   + +  H  
Sbjct: 199 TVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNAC-ASEGALKWVKRVHRHAL 257

Query: 238 IK----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
                 D+    +++  YAK G +  A+ +F+ M  R+V SW++MI  +A+HG   EA  
Sbjct: 258 DAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYD 317

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           LF +M  +G +PD I  +  ++ACA  GAL+  K IH     S + +D+ V TAL+ MY 
Sbjct: 318 LFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYS 377

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           K GS+D+AR +F  M  +NV+S+N MI+GL  +G G++AL+ F +M   G+  D + F+ 
Sbjct: 378 KSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVA 437

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           VL ACSH+GL  EG   + +M +  GIEP + H +C+VDLL RAG L +A   +++M + 
Sbjct: 438 VLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVD 497

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
           P+ A WG LL +CR + NV L E+V +  ++L   +   YVLLSNIYA+AG W+    +R
Sbjct: 498 PDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVR 557

Query: 534 KMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            MMR+R I+KE GRS IE+D  I +F+  +    + +E+
Sbjct: 558 TMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHPECKEI 596



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/415 (30%), Positives = 220/415 (53%), Gaps = 18/415 (4%)

Query: 87  YTQSSNP-QKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC 145
           + Q++N   +A+   +N  ++GL+ D++ Y  VLK C     L+   ++H  ++K     
Sbjct: 2   HVQTANTLSEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQ 61

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM- 204
           +  V+N L+ +Y +CG +  AR VF+    K   SWN ++ G+VE      A  +F EM 
Sbjct: 62  NAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMC 121

Query: 205 ---PQKDAISWSIMIDGYRKKKGDISSARILFE-HMPIK------DLISWNSMIDGYAKI 254
               Q +A ++ I++    K    +S+ +   E H  I+      D+    +++  Y K 
Sbjct: 122 HEGVQPNAGTYMIIL----KACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKC 177

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
           G +  A+++F+ +   ++ SW++MI  YAQ GN KEA  L  +M  +G +P+ I+ +  +
Sbjct: 178 GSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSIL 237

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
           +ACA  GAL   K +H     + + +D+ V TAL+ MY K GS+D+AR +F  M  ++V+
Sbjct: 238 NACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVV 297

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434
           S+NVMI     +G G EA   F QM+TEG   D ++FL +L AC+ +G A E  +     
Sbjct: 298 SWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAG-ALEWVKKIHRH 356

Query: 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
               G+E  +   + LV + S++G ++ A  + + M ++ N+  W  ++     H
Sbjct: 357 ALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVR-NVVSWNAMISGLAQH 410



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 162/294 (55%), Gaps = 9/294 (3%)

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           N+++  Y + G L  A+ +F+ + +++  SW+ MI GY +H + ++A+ LFREM  +GV+
Sbjct: 67  NNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQ 126

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           P+  + M  + ACA + AL  GK +H  ++   +  D+ V TAL+ MY KCGS++EARRI
Sbjct: 127 PNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRI 186

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F ++   ++IS+ VMI     +G G+EA +   QME EG   + + ++ +L AC+  G  
Sbjct: 187 FDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEG-- 244

Query: 425 TEGYRIFQSMKRH---CGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
               +  + + RH    G+E  +   + LV + +++G ++ A  + + M ++ ++  W  
Sbjct: 245 --ALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVR-DVVSWNV 301

Query: 482 LLLACRNHQNVTLA-EVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           ++ A   H     A ++ ++   E    D  +++ + N  A AG  E   +I +
Sbjct: 302 MIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHR 355



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 163/318 (51%), Gaps = 10/318 (3%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++++A R+F+ +   +      MI  Y QS N ++A    + M+++G   +  TY  +L 
Sbjct: 179 SINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILN 238

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC     L     +H   +  G   DV V   L+ MY+K G +  AR VF+  +++D+VS
Sbjct: 239 ACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVS 298

Query: 181 WNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           WN+++  F E G   +A ++F +M     + DAI +  +++      G +   + +  H 
Sbjct: 299 WNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNAC-ASAGALEWVKKIHRHA 357

Query: 237 PIK----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
                  D+    +++  Y+K G +  A+ +F+ M  RNV SW+ MI G AQHG  ++AL
Sbjct: 358 LDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDAL 417

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR-ITMDMIVQTALIDM 351
            +FR M   GV+PD ++ +  +SAC+  G +D G+  ++ M +   I  D+     ++D+
Sbjct: 418 EVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDL 477

Query: 352 YMKCGSLDEARRIFYSMT 369
             + G L EA+    +M 
Sbjct: 478 LGRAGRLMEAKLFIDNMA 495


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 160/418 (38%), Positives = 259/418 (61%), Gaps = 1/418 (0%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D+F  N ++  Y     +  AR  F+   +KD  SWN ++ GF + G M +ARE+F  MP
Sbjct: 67  DIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMP 126

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
            ++++SW+ MI GY  + GD+  A+ LFE  P++ +++W +MI G+ K G +  A++ F 
Sbjct: 127 VRNSVSWNAMISGY-VESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFE 185

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
           EMP +N+ +W+ MI GY ++   +  L LF+ M+  G RP+  S+   +  C+ + AL L
Sbjct: 186 EMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKL 245

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
           GK +H  + +S ++ ++   T+L+ MY KCG L++A ++F  M +K+V+++N MI+G   
Sbjct: 246 GKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQ 305

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           +G GE+AL  F +M  EG+  D + F+ VL AC+H+G    G   F SM R  G+E K +
Sbjct: 306 HGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPD 365

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
           HY+C+VDLL R G+L +A+++++ MP KP+ A++GTLL ACR H+N+ LAE   + L+ L
Sbjct: 366 HYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNL 425

Query: 506 KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
             +    YV L+N+YA    W+H   +R+ M+  K+ K  G S IE+   + EF SG+
Sbjct: 426 DPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGD 483



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 162/345 (46%), Gaps = 43/345 (12%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV-ECGEMGKAREVFDEM 204
           +V   N +I  + + G +  A  VFE   +K  V+WN +L G+    G++  AR++FD +
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63

Query: 205 PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
           P+ D  S++IM+  Y     D+ SAR+ F+ MP+KD  SWN+MI G+++ G +  A++LF
Sbjct: 64  PEPDIFSYNIMLACYL-HNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELF 122

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
             MP RN  SW+ MI GY + G+   A  LF       V P                   
Sbjct: 123 LVMPVRNSVSWNAMISGYVESGDLDLAKQLFE------VAP------------------- 157

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
                            ++  TA+I  +MK G ++ A + F  M  KN++++N MIAG  
Sbjct: 158 --------------VRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYI 203

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444
            N   E  LK F +M   G   +      VL+ CS+      G ++ Q + +   +   +
Sbjct: 204 ENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICK-SPVSWNI 262

Query: 445 EHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
              + L+ +  + G+LE A  +   MP K ++  W  ++     H
Sbjct: 263 TAGTSLLSMYCKCGDLEDAWKLFLVMPQK-DVVTWNAMISGYAQH 306



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 165/372 (44%), Gaps = 78/372 (20%)

Query: 39  DLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALS 98
           D I EP   S  +M     +  +++ A   F+Q+   +T   NTMI G++Q+    +A  
Sbjct: 61  DRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARE 120

Query: 99  FYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYS 158
            ++ M  +                                       +    N +I  Y 
Sbjct: 121 LFLVMPVR---------------------------------------NSVSWNAMISGYV 141

Query: 159 KCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDG 218
           + G +  A+ +FE + ++ +V+W  ++ GF++ G++  A + F+EMP K+ ++W+ MI G
Sbjct: 142 ESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAG 201

Query: 219 Y---------------------RKKKGDISSARI------------LFEHMPIKDLISWN 245
           Y                     R     +SS  +                +  K  +SWN
Sbjct: 202 YIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWN 261

Query: 246 -----SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
                S++  Y K GDL  A +LF  MP+++V +W+ MI GYAQHG  ++ALYLF +M  
Sbjct: 262 ITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRD 321

Query: 301 QGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
           +G++PD I+ +  +SAC   G +DLG ++ +  ++   +       T ++D+  + G L 
Sbjct: 322 EGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLV 381

Query: 360 EARRIFYSMTKK 371
           EA  +   M  K
Sbjct: 382 EAVDLIKKMPFK 393


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 189/561 (33%), Positives = 293/561 (52%), Gaps = 57/561 (10%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK----------GLLV 110
           N++ A   F+ +    T  +N +I GY ++  P  AL  +  M  +          GL +
Sbjct: 32  NIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSRDLGSYNALIAGLSL 91

Query: 111 DNYTYP---FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF------------VVNGLIG 155
             +T P     L +  +   +V  T +    V+ G L D                  L+G
Sbjct: 92  RRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLLG 151

Query: 156 MYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIM 215
            +   G +  AR +F+    KD+V+   +L G+ + G + +AR +FDEMP+++ +SW+ M
Sbjct: 152 GFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAM 211

Query: 216 IDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
           I GY  + G +  AR LFE MP ++ +SW +M+ GY + G +  A+ LFN MP+  V + 
Sbjct: 212 ISGY-AQNGKVILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAAC 270

Query: 276 SIMIDGYAQHGNPK-------------------------------EALYLFREMLCQGVR 304
           + M+ G+ QHG                                  EAL  FREMLC+G+R
Sbjct: 271 NAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIR 330

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           P+  S +  ++ CA +   D G+ +H  M R     D+   +ALI MY+KCG+LD+A+R+
Sbjct: 331 PNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRV 390

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F     K+V+ +N MI G   +G GEEAL  F  +    +  D + ++GVL ACS++G  
Sbjct: 391 FNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKV 450

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            EG  IF SM  +  I     HYSC+VDLL RAG +++AL+++ +MP++P+  +WG L+ 
Sbjct: 451 KEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMG 510

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           ACR H+N  +AEV  + L+EL+    G YVLLS+IY   G WE A  +RK +  R + K 
Sbjct: 511 ACRMHKNAEIAEVAAKKLLELEPGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKS 570

Query: 545 TGRSVIEIDGNIKEFVSGEIF 565
            G S IE +  +  F SG++ 
Sbjct: 571 PGCSWIEYNKMVHLFTSGDVL 591



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 169/403 (41%), Gaps = 67/403 (16%)

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
           V   N  I    + G++  AR+ F+   ++   S+N ++ G+        A  +F  MP 
Sbjct: 17  VVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPS 76

Query: 207 KDAISWSIMIDGYRKKKGDISSARILFEHMPI-KDLISWNSMIDGYAKIGDLVAAQQLFN 265
           +D  S++ +I G   ++  +  A      +P+   ++S+ S++ GY + G L  A +LF+
Sbjct: 77  RDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFH 136

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREM--------------LCQGVR------- 304
           +MPERN  ++++++ G+   G   EA  LF EM               CQ  R       
Sbjct: 137 QMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARAL 196

Query: 305 ------PDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
                  +V+S    IS  AQ G + L  K   V   R+ ++      TA++  Y++ G 
Sbjct: 197 FDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVSW-----TAMLVGYIQAGH 251

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNG------------------------------ 387
           +++A  +F +M    V + N M+ G G +G                              
Sbjct: 252 VEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQN 311

Query: 388 -FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
            F  EAL  F +M   GI  +   F+ +L  C+    A  G  +  +M R C  +  +  
Sbjct: 312 EFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLR-CSFDTDVFA 370

Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
            S L+ +  + G L++A  +      K ++ +W +++     H
Sbjct: 371 VSALITMYIKCGNLDKAKRVFNMFEPK-DVVMWNSMITGYAQH 412



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 15/120 (12%)

Query: 28  ILQILAQLTTND-------------LITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           IL + A L T D               T+ F +S L+         N+D+A+R+FN    
Sbjct: 339 ILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCG--NLDKAKRVFNMFEP 396

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
            +  M N+MI GY Q    ++AL  + +++   +  D  TY  VL AC     + EG EI
Sbjct: 397 KDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREI 456


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  337 bits (864), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 164/434 (37%), Positives = 264/434 (60%), Gaps = 1/434 (0%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           DV   N ++  Y++ G M  AR +F+ + ++D+ +W  V+ G+ + G + +AR VFD MP
Sbjct: 223 DVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP 282

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
           +++A+SW+ M+  Y +++  +  A+ LF  MP +++ SWN+M+ GYA+ G L  A+ +F+
Sbjct: 283 ERNAVSWNAMVAAYIQRRM-MDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD 341

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
            MP+++  SW+ M+  Y+Q G  +E L LF EM   G   +  +    +S CA + AL+ 
Sbjct: 342 TMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALEC 401

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
           G  +H  + R+   +   V  AL+ MY KCG++++AR  F  M +++V+S+N MIAG   
Sbjct: 402 GMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYAR 461

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           +GFG+EAL+ F  M T     DD+  +GVL ACSHSGL  +G   F SM    G+  K E
Sbjct: 462 HGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPE 521

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
           HY+C++DLL RAG L +A ++++ MP +P+  +WG LL A R H+N  L     E + EL
Sbjct: 522 HYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFEL 581

Query: 506 KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIF 565
           + ++ G+YVLLSNIYA +G W  A ++R MM +R +KK  G S IE+   +  F +G+  
Sbjct: 582 EPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCV 641

Query: 566 DVQSEELELVIQSF 579
             + E++   ++  
Sbjct: 642 HPEKEKIYAFLEDL 655



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 125/431 (29%), Positives = 213/431 (49%), Gaps = 29/431 (6%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            AERLF  + + +T  +N M+ GY+ +     A S +  + R     DNY+Y  +L A  
Sbjct: 56  DAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRP----DNYSYNTLLHALA 111

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
           V   L +   +  E+     + D    N +I  ++  G +  AR  F+ +  KD VSWN 
Sbjct: 112 VSSSLADARGLFDEMP----VRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNG 167

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243
           +L  +V  G + +AR +F+   + D ISW+ ++ GY  + G +S AR LF+ MP +D++S
Sbjct: 168 MLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGY-VQWGKMSEARELFDRMPGRDVVS 226

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
           WN M+ GYA+ GD+V A++LF+  P R+VF+W+ ++ GYAQ+G  +EA  +F  M  +  
Sbjct: 227 WNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER-- 284

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
             + +S    ++A  Q   +D  K +   M       ++     ++  Y + G L+EA+ 
Sbjct: 285 --NAVSWNAMVAAYIQRRMMDEAKELFNMMP----CRNVASWNTMLTGYAQAGMLEEAKA 338

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS---- 419
           +F +M +K+ +S+  M+A     G  EE L+ F +M   G   +   F  VL  C+    
Sbjct: 339 VFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAA 398

Query: 420 -HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
              G+   G  I       C +       + L+ +  + G +E A N  E M  + ++  
Sbjct: 399 LECGMQLHGRLIRAGYGVGCFVG------NALLAMYFKCGNMEDARNAFEEMEER-DVVS 451

Query: 479 WGTLLLACRNH 489
           W T++     H
Sbjct: 452 WNTMIAGYARH 462



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 148/308 (48%), Gaps = 21/308 (6%)

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           +++  N  +   +  G +  A  +F  MP++   +++ M+ GY    G +  A  LF  +
Sbjct: 37  EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGY-SANGRLPLAASLFRAI 95

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
           P  D  S+N+++   A    L  A+ LF+EMP R+  ++++MI  +A HG     + L R
Sbjct: 96  PRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHG----LVSLAR 151

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
                    D +S  G ++A  + G ++  + +      SR   D+I   AL+  Y++ G
Sbjct: 152 HYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF----NSRTEWDVISWNALMSGYVQWG 207

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP-KDDLIFLGVL 415
            + EAR +F  M  ++V+S+N+M++G    G   EA + F     +  P +D   +  V+
Sbjct: 208 KMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF-----DAAPVRDVFTWTAVV 262

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
              + +G+  E  R+F +M     +      ++ +V    +   +++A  +   MP + N
Sbjct: 263 SGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAYIQRRMMDEAKELFNMMPCR-N 316

Query: 476 LALWGTLL 483
           +A W T+L
Sbjct: 317 VASWNTML 324



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 9/237 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +++A+ +F+ + Q +      M+  Y+Q    ++ L  ++ M R G  V+   +  VL  
Sbjct: 333 LEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLST 392

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  +  L  G ++HG +++ G+    FV N L+ MY KCG+M  AR+ FE  E +D+VSW
Sbjct: 393 CADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSW 452

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR---KKKGDISSARILFEHMPI 238
           N ++ G+   G   +A E+FD M         I + G        G +      F  M  
Sbjct: 453 NTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHH 512

Query: 239 KDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPK 289
              ++     +  MID   + G L  A  L  +MP E +   W  ++     H NP+
Sbjct: 513 DFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPE 569



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 124/274 (45%), Gaps = 43/274 (15%)

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           ++I  N  I  + + G +  A++LF  MP R+  +++ M+ GY+ +G    A  LFR + 
Sbjct: 37  EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAI- 95

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK-RSRITMDMIVQT------------ 346
               RPD  S    + A A   +L   + +   M  R  +T ++++ +            
Sbjct: 96  ---PRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARH 152

Query: 347 --------------ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
                          ++  Y++ G ++EAR +F S T+ +VIS+N +++G    G   EA
Sbjct: 153 YFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEA 212

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIA-CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
            + F +M     P  D++   ++++  +  G   E  R+F +          +  ++ +V
Sbjct: 213 RELFDRM-----PGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR-----DVFTWTAVV 262

Query: 452 DLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
              ++ G LE+A  + ++MP + N   W  ++ A
Sbjct: 263 SGYAQNGMLEEARRVFDAMPER-NAVSWNAMVAA 295



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 66/153 (43%), Gaps = 11/153 (7%)

Query: 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF 396
           R+  ++I     I  +M+ G + +A R+F +M +++  +YN M+AG   NG    A   F
Sbjct: 33  RLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLF 92

Query: 397 AQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
                  IP+ D+  +  +L A + S    +   +F  M     +      Y+ ++   +
Sbjct: 93  -----RAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVT-----YNVMISSHA 142

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
             G +  A +  +  P K  ++  G L    RN
Sbjct: 143 NHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRN 175



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 40/224 (17%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           NM+ A   F ++ + +    NTMI GY +    ++AL  +  M+      D+ T   VL 
Sbjct: 433 NMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLA 492

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC            H  +V+ G +   + ++   G+ +K  H  C         + DL+ 
Sbjct: 493 ACS-----------HSGLVEKG-ISYFYSMHHDFGVTAKPEHYTC---------MIDLLG 531

Query: 181 WNLVLRGFVECGEMGKAREVFDEMP-QKDAISWSIMIDG---YRKKKGDISSARILFEHM 236
                      G + +A ++  +MP + D+  W  ++     +R  +   S+A  +FE  
Sbjct: 532 ---------RAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELE 582

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV-----FSW 275
           P ++   +  + + YA  G    A+++   M ER V     FSW
Sbjct: 583 P-ENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSW 625


>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 568

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 183/505 (36%), Positives = 291/505 (57%), Gaps = 46/505 (9%)

Query: 115 YPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174
           Y   LK C     + +  +IH  VVK+      F+V  ++      GH+  A  +F+   
Sbjct: 13  YITSLKNC---FKITQLKKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLL 69

Query: 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEM---------PQK------------------ 207
             ++ ++N ++R +        A  VF +M         P K                  
Sbjct: 70  HPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRL 129

Query: 208 ---------------DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA 252
                            I+ + +ID Y  K GD+++A  +FE M  +D+ISWNS+I GY 
Sbjct: 130 GMQVHGLVYKFGADFHCITENALIDMY-TKFGDLTNACKVFEEMSHRDVISWNSLIFGYV 188

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
           K+G + +A++LF++MP R + SW+ MI GY + G   +AL +FREM   G+ PD IS++ 
Sbjct: 189 KLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIA 248

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
            + ACAQ+GAL++GKWIH++  ++       +  ALI+MY KCG +DEA  +F  + +K+
Sbjct: 249 VLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKD 308

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
           VIS++ MI GL  +G G EA++ F +M    +  +++ FLGVL+ACSH+GL  EG + F 
Sbjct: 309 VISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFD 368

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV 492
            M     IEP++EHY CL+DLL R+G L QAL+ +  MP+KP+  +W +LL +CR H+N+
Sbjct: 369 VMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNL 428

Query: 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
            +A + V+ L+EL+ ++ G YVLL+N+YA+ G WE    IRK++R ++IKK  G S IE+
Sbjct: 429 QIAVIAVKQLMELEPEESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSIEV 488

Query: 553 DGNIKEFVSGEIFDVQSEELELVIQ 577
           +  ++EFVS +     S+E+  +++
Sbjct: 489 NNVVQEFVSSDDSKPFSQEVFWILE 513



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 129/426 (30%), Positives = 201/426 (47%), Gaps = 58/426 (13%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           L+N  ++ L+     T + +I A +    L    F ++++L S    N  ++  A  LF 
Sbjct: 9   LENRYITSLKNCFKITQLKKIHAHVVKLSLSQSNFLVTKMLDS--CDNLGHVSYATLLFK 66

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM---KRKGLLVDNYTYPFVLKACGVLMG 127
           Q+  PN + +N +IR Y  + +   A+S +V M       +  D +T+PFV+K+C  ++ 
Sbjct: 67  QLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILC 126

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
              G ++HG V K G        N LI MY+K G +  A  VFE    +D++SWN ++ G
Sbjct: 127 HRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFG 186

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI----KDLIS 243
           +V+ G+M  ARE+FD+MP +  +SW+ MI GY  + G    A  +F  M +     D IS
Sbjct: 187 YVKLGQMNSARELFDDMPVRTIVSWTTMITGY-GRMGCYGDALDVFREMQMVGIEPDEIS 245

Query: 244 ------------------W-----------------NSMIDGYAKIGDLVAAQQLFNEMP 268
                             W                 N++I+ YAK G +  A  LF+++ 
Sbjct: 246 IIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLV 305

Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-K 327
           E++V SWS MI G A HG   EA+ LF EM    V P+ I+ +G + AC+  G  D G K
Sbjct: 306 EKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLK 365

Query: 328 WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA------------RRIFYSMTKKNVIS 375
           +  V      I  ++     LID+  + G L +A             RI+ S+     I 
Sbjct: 366 YFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIH 425

Query: 376 YNVMIA 381
            N+ IA
Sbjct: 426 RNLQIA 431


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 185/567 (32%), Positives = 305/567 (53%), Gaps = 39/567 (6%)

Query: 41  ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFY 100
           I EP    +  M +    T  +D A  LF+ + + +    N M+   +QS   ++AL   
Sbjct: 199 IKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMV 258

Query: 101 VNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC 160
           V+M+ KG+ +D+ TY   L AC  L  L  G ++H +V++     D +V + L+ +Y+KC
Sbjct: 259 VDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKC 318

Query: 161 GHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMI 216
           G    A+ VF     ++ V+W +++ GF++ G   ++ E+F++M  +    D  + + +I
Sbjct: 319 GCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLI 378

Query: 217 DG----------------------------------YRKKKGDISSARILFEHMPIKDLI 242
            G                                     K  ++ SA  +F  M  KD++
Sbjct: 379 SGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIV 438

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ- 301
           SW SMI  ++++G++  A++ F+ M  +NV +W+ M+  Y QHG  ++ L ++  ML + 
Sbjct: 439 SWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEK 498

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
            VRPD ++ +     CA +GA  LG  I     +  + +D  V  A+I MY KCG + EA
Sbjct: 499 DVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEA 558

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
           R++F  +  K+++S+N MI G   +G G++A++ F  +   G   D + ++ VL  CSHS
Sbjct: 559 RKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHS 618

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           GL  EG   F  MKR   I P LEH+SC+VDLL RAG L +A ++++ MPMKP   +WG 
Sbjct: 619 GLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGA 678

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           LL AC+ H N  LAE+  + + EL + D G Y+L++ IYADAG  + + +IRK+MR + I
Sbjct: 679 LLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGI 738

Query: 542 KKETGRSVIEIDGNIKEFVSGEIFDVQ 568
           KK  G S +E++  +  F + ++   Q
Sbjct: 739 KKNPGYSWMEVNNKVHVFKADDVSHPQ 765



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 178/382 (46%), Gaps = 42/382 (10%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           Q+ AQ+  N    +P+  S L+            +A+ +FN ++  N      +I G+ Q
Sbjct: 291 QLHAQVIRNLPCIDPYVASALVELYAKCGCFK--EAKGVFNSLHDRNNVAWTVLIAGFLQ 348

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
                +++  +  M+ + + +D +    ++  C   M L  G ++H   +K G +  V V
Sbjct: 349 HGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVV 408

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA 209
            N LI MY+KC ++  A S+F     KD+VSW  ++    + G + KARE FD M  K+ 
Sbjct: 409 SNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNV 468

Query: 210 ISWSIMIDGYRKKKGDISSARILFEHMPIKDL-ISW------------------------ 244
           I+W+ M+  Y +   +    R+    +  KD+   W                        
Sbjct: 469 ITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIG 528

Query: 245 --------------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
                         N++I  Y+K G ++ A+++F+ +  +++ SW+ MI GY+QHG  K+
Sbjct: 529 RTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQ 588

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR-SRITMDMIVQTALI 349
           A+ +F ++L +G +PD IS +  +S C+  G +  GK     MKR   I+  +   + ++
Sbjct: 589 AIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMV 648

Query: 350 DMYMKCGSLDEARRIFYSMTKK 371
           D+  + G L EA+ +   M  K
Sbjct: 649 DLLGRAGHLTEAKDLIDEMPMK 670



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 116/459 (25%), Positives = 201/459 (43%), Gaps = 56/459 (12%)

Query: 44  PFTLSQLLMSLTSPNTLN-------------MDQAERLFNQIYQPNTYMHNTMIRGYTQS 90
           P     LL  +  PN +              +  A  LF ++   +    NT++ GY QS
Sbjct: 56  PDARRLLLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQS 115

Query: 91  SNPQKALSFYVNMKRKGLLVDN-YTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
                +L  +V+M R G    N +T+ + +K+CG L       ++ G V K G   D  V
Sbjct: 116 QQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDV 175

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA 209
              L+ M+ +CG +  A  +F   +   +   N +L G+V+   +  A E+FD MP++D 
Sbjct: 176 AAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDV 235

Query: 210 ISWSIMID---------------------GYRKKKGDISS-----ARI------------ 231
           +SW++M+                      G R      +S     AR+            
Sbjct: 236 VSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQ 295

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           +  ++P  D    +++++ YAK G    A+ +FN + +RN  +W+++I G+ QHG   E+
Sbjct: 296 VIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTES 355

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           + LF +M  + +  D  ++   IS C     L LG+ +H    +S     ++V  +LI M
Sbjct: 356 VELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISM 415

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y KC +L  A  IF  M +K+++S+  MI      G   +A + F  M T+ +    + +
Sbjct: 416 YAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNV----ITW 471

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
             +L A    G   +G R++  M     + P    Y  L
Sbjct: 472 NAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTL 510



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 119/501 (23%), Positives = 211/501 (42%), Gaps = 82/501 (16%)

Query: 114 TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCAR------ 167
            +   L++CG    L     +HG +V +G    VF+ N L+  Y  CG +  AR      
Sbjct: 6   AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTD 65

Query: 168 --------------------------SVFEGSEIKDLVSWNLVLRGFVE----------- 190
                                      +F     +D+ SWN ++ G+ +           
Sbjct: 66  IAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESF 125

Query: 191 ----------------------CGEMGKAREVFDEM-------PQKDAISWSIMIDGYRK 221
                                 CG +G+       +        Q D+   + ++D +  
Sbjct: 126 VSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMF-V 184

Query: 222 KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           + G +  A  LF  +    +   NSM+ GY K   +  A +LF+ MPER+V SW++M+  
Sbjct: 185 RCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSA 244

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
            +Q G  +EAL +  +M  +GVR D  +   +++ACA++ +L  GK +H  + R+   +D
Sbjct: 245 LSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCID 304

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
             V +AL+++Y KCG   EA+ +F S+  +N +++ V+IAG   +G   E+++ F QM  
Sbjct: 305 PYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRA 364

Query: 402 EGIPKDDLIFLGVLIA--CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
           E +  D    L  LI+  CS   L     R   S+    G    +   + L+ + ++   
Sbjct: 365 ELMTLDQFA-LATLISGCCSRMDLCLG--RQLHSLCLKSGQIQAVVVSNSLISMYAKCDN 421

Query: 460 LEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519
           L+ A +I   M  K ++  W +++ A     N+  A    +G   +   +   +  +   
Sbjct: 422 LQSAESIFRFMNEK-DIVSWTSMITAHSQVGNIAKAREFFDG---MSTKNVITWNAMLGA 477

Query: 520 YADAGMWEHALRIRKMMRKRK 540
           Y   G  E  LR+  +M   K
Sbjct: 478 YIQHGAEEDGLRMYNVMLSEK 498


>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
 gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 182/513 (35%), Positives = 291/513 (56%), Gaps = 44/513 (8%)

Query: 110 VDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV--FVVNGLIGMYSKCGHMGCAR 167
           ++  T+ F+L+ CG L  L    +IHG+ V +G LC     +   L+  Y++ G    A+
Sbjct: 1   MNTQTFYFLLQKCGSLEKL---KQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQ 57

Query: 168 SVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM------PQKDAISWSIMIDGYRK 221
            VF   +  D+VSW  ++  ++   +  KA  +F  +      P    +  ++   G+RK
Sbjct: 58  KVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRK 117

Query: 222 --------------------------------KKGDISSARILFEHMPIKDLISWNSMID 249
                                           + G I  A  +F+ M IKD+ SW S+++
Sbjct: 118 DLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLN 177

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR-PDVI 308
           G+ K  D+ AA+++F+EMP RN  SW+ MI GY Q   P   L LF+EM  +G   P VI
Sbjct: 178 GFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVI 237

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           +++  +S CA +GA DLG  +H ++ ++ + +D+ V  AL+DMY K G+L  A +IF  M
Sbjct: 238 TIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEM 297

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
            K++V S+  MI+GL ++G G  AL+ F+ M   G+  +++  L VL ACSH+GL  EG 
Sbjct: 298 PKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGR 357

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
            +FQ M +  GI+PK++HY C+VDLL RAG L +A  ++E MP+KP+  +W +LL AC  
Sbjct: 358 SLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLV 417

Query: 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRS 548
           H N+ LAE+  + ++EL+ DD G+Y+LL NIY  A  WE AL+ RK MR R++KK+ G S
Sbjct: 418 HGNLALAEMAGKMIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGCS 477

Query: 549 VIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
            +E++G + EF++ +       ++  V+++  +
Sbjct: 478 WVEVNGVVHEFLAEDAVHCIRADVYTVLEAITE 510



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 125/403 (31%), Positives = 196/403 (48%), Gaps = 51/403 (12%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A+++FN I  P+      +I  Y  +S P KA S + ++   GL  D++     + ACG 
Sbjct: 56  AQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGH 115

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
              L  G  +HG V +     D  V N LI MYS+ G +  A SVF+  EIKD+ SW  +
Sbjct: 116 RKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSL 175

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK----- 239
           L GF++C ++  AR +FDEMP ++++SW+ MI GY + +  I     LF+ M  +     
Sbjct: 176 LNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLE-LFQEMRAEGKDWP 234

Query: 240 -----------------------------------DLISWNSMIDGYAKIGDLVAAQQLF 264
                                              D+   N+++D YAK G LV A ++F
Sbjct: 235 TVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIF 294

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
            EMP+R+VFSW+ MI G A HG    AL  F +M   GV P+ ++++  +SAC+  G + 
Sbjct: 295 QEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVV 354

Query: 325 LGKWIHVFMKRSR-ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK--NVISYNVMIA 381
            G+ +   M +   I   +     ++D+  + G L EA+ +   M  K  +VI  +++ A
Sbjct: 355 EGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSA 414

Query: 382 GL--GMNGFGEEALKCFAQMETEGIPKDDLIFLGVL-IACSHS 421
            L  G     E A K   ++E    P DD +++ +  I CS S
Sbjct: 415 CLVHGNLALAEMAGKMIIELE----PDDDGVYILLWNIYCSAS 453



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 20/242 (8%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A R+F+++   N+     MI GY Q   P   L  +  M+ +G       +P V+ 
Sbjct: 184 DIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEG-----KDWPTVIT 238

Query: 121 ACGVLMGLVE------GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174
              VL G  +      G+ +HG V K     DV V N L+ MY+K G +  A  +F+   
Sbjct: 239 IVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMP 298

Query: 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIM---IDGYRKKKGDISSARI 231
            +D+ SW  ++ G    G+   A E F +M +   +   +    +       G +   R 
Sbjct: 299 KRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGRS 358

Query: 232 LFEHM----PIKDLIS-WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQH 285
           LF+ M     IK  I  +  M+D   + G L  A++L   MP + +   W  ++     H
Sbjct: 359 LFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVH 418

Query: 286 GN 287
           GN
Sbjct: 419 GN 420


>gi|359491277|ref|XP_003634255.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g22760-like [Vitis vinifera]
          Length = 583

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 185/542 (34%), Positives = 287/542 (52%), Gaps = 44/542 (8%)

Query: 38  NDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKAL 97
           +D   EP  + Q+++S ++ +         + +    P+++     IR +TQ    + A 
Sbjct: 19  DDCHLEPILVRQIILSASNCSATIAHYVHSILHHSKSPDSFSWACTIRFFTQHGQFKGAF 78

Query: 98  SFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCD---VFVVNGLI 154
           + YV M+R GL    +     LKAC  ++  +    IHG+V K GF      +++   L+
Sbjct: 79  ALYVQMQRWGLCPTTFALSSALKACDRIVYRMGVLSIHGQVQKFGFCGGGDGIYMETALV 138

Query: 155 GMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSI 214
               K G M  +  +F      D   W+ +L G ++ G++  A+ VFDE+PQKD ISW+ 
Sbjct: 139 DFDCKLGDMEISSKMF------DEXGWHSMLAGCLKSGDLAVAQRVFDEIPQKDVISWNS 192

Query: 215 MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
           M   Y  + GD+  A  LF+ MP ++  SWN+MI+GY + GDL +A+  F+ MP+RN  S
Sbjct: 193 MFSXY-ARSGDLEKASSLFQQMPERNFASWNAMINGYVEFGDLESARSFFDAMPQRNSAS 251

Query: 275 WSIMIDGY-------------------------------AQHGNPKEALYLFREMLCQGV 303
           W  MI GY                               AQ+   KEAL LF  ML   V
Sbjct: 252 WMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAVIACYAQNSKLKEALKLFNMMLHPNV 311

Query: 304 --RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
             +PD +++   IS C+Q G    G WI  +M+R  + MD  + TAL+D+Y  CGS+D+A
Sbjct: 312 NVQPDEMTLASVISPCSQFGDFRFGPWIESYMRRLGVEMDGRLGTALLDLYAXCGSIDKA 371

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
             +F+ + KK++++Y  MI G GMNG   +A+K F +M    I  + ++F G+L   +HS
Sbjct: 372 YELFHGLRKKDLVAYTAMILGCGMNGKAIDAIKLFDEMVDAQICPNLIMFTGLLTTYNHS 431

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           GL  EGY  F +MK++  + P ++HY  +VDL  RAG L++AL +++SMPM+P+  +WG 
Sbjct: 432 GLVEEGYHCFTTMKKY-NLVPLVDHYGIMVDLFGRAGWLQEALELIKSMPMQPHAGVWGA 490

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           LL ACR H N  L E+  +   EL+ D  G   L  NIY      +   R+RK+ +++  
Sbjct: 491 LLFACRLHNNADLGEIAAQHFFELEPDTTGYCSLPCNIYVSGERLDDVRRLRKIRKEKTF 550

Query: 542 KK 543
            K
Sbjct: 551 SK 552


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 185/521 (35%), Positives = 297/521 (57%), Gaps = 17/521 (3%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +MD A ++F+ +Y+ +    N MI GY +S + +KA   +  M+++G   +  ++  +L 
Sbjct: 212 SMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILD 271

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C     L  G  +H + +  G + DV V   LI MY  CG +  AR VF+  +++D+VS
Sbjct: 272 GCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVS 331

Query: 181 WNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           W +++RG+ E   +  A  +F  M     Q D I++  +I+       D+S AR +   +
Sbjct: 332 WTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINAC-ASSADLSLAREIHSQV 390

Query: 237 PIK----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
                  DL+   +++  YAK G +  A+Q+F+ M  R+V SWS MI  Y ++G  +EA 
Sbjct: 391 VRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAF 450

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
             F  M    V PDV++ +  ++AC  +GALDLG  I+    ++ +   + V  ALI+M 
Sbjct: 451 ETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMN 510

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
           +K GS++ AR IF +M +++V+++NVMI G  ++G   EAL  F +M  E    + + F+
Sbjct: 511 VKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFV 570

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
           GVL ACS +G   EG R F  +    GI P +E Y C+VDLL RAGEL++A  ++  MP+
Sbjct: 571 GVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPL 630

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           KPN ++W TLL ACR + N+ +AE   E  +  +  D  +YV LS++YA AGMWE+  ++
Sbjct: 631 KPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKV 690

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFV--------SGEIF 565
           RK+M  R ++KE G + IE++G +  FV        +GEI+
Sbjct: 691 RKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIY 731



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 143/478 (29%), Positives = 255/478 (53%), Gaps = 22/478 (4%)

Query: 27  HILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRG 86
           HI+Q   QL   +L T        L+ L S    NM +A + F+ +        N +I G
Sbjct: 86  HIIQSGRQLNIYELNT--------LIKLHSICG-NMLEARQTFDSVENKTVVTWNAIIAG 136

Query: 87  YTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCD 146
           Y Q  + ++A + +  M  + +     T+  VL AC    GL  G E H +V+K+GF+ D
Sbjct: 137 YAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSD 196

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
             +   L+ MY K G M  AR VF+G   +D+ ++N+++ G+ + G+  KA ++F  M Q
Sbjct: 197 FRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQ 256

Query: 207 K----DAISWSIMIDGYRKKK----GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLV 258
           +    + IS+  ++DG    +    G    A+ +   + + D+    ++I  Y   G + 
Sbjct: 257 EGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGL-VDDVRVATALIRMYMGCGSIE 315

Query: 259 AAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACA 318
            A+++F++M  R+V SW++MI GYA++ N ++A  LF  M  +G++PD I+ +  I+ACA
Sbjct: 316 GARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACA 375

Query: 319 QVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNV 378
               L L + IH  + R+    D++V TAL+ MY KCG++ +AR++F +M++++V+S++ 
Sbjct: 376 SSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSA 435

Query: 379 MIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF-QSMKRH 437
           MI     NG GEEA + F  M+   +  D + ++ +L AC H G    G  I+ Q++K  
Sbjct: 436 MIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIK-- 493

Query: 438 CGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLA 495
             +   +   + L+++  + G +E+A  I E+M ++ ++  W  ++     H N   A
Sbjct: 494 ADLVSHIPVGNALINMNVKHGSIERARYIFENM-VQRDVVTWNVMIGGYSLHGNAREA 550



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 206/384 (53%), Gaps = 11/384 (2%)

Query: 110 VDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSV 169
           +D+ TY  + + C +L     G ++   +++ G   +++ +N LI ++S CG+M  AR  
Sbjct: 59  IDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQT 118

Query: 170 FEGSEIKDLVSWNLVLRGFVECGEMGKA----REVFDEMPQKDAISWSIMIDGYRK---- 221
           F+  E K +V+WN ++ G+ + G + +A    R++ DE  +   I++ I++D        
Sbjct: 119 FDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGL 178

Query: 222 KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           K G    A+++     + D     +++  Y K G +  A+Q+F+ + +R+V ++++MI G
Sbjct: 179 KLGKEFHAQVIKVGF-VSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGG 237

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
           YA+ G+ ++A  LF  M  +G +P+ IS +  +  C+   AL  GK +H     + +  D
Sbjct: 238 YAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDD 297

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
           + V TALI MYM CGS++ ARR+F  M  ++V+S+ VMI G   N   E+A   FA M+ 
Sbjct: 298 VRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQE 357

Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
           EGI  D + ++ ++ AC+ S   +    I   + R  G    L   + LV + ++ G ++
Sbjct: 358 EGIQPDRITYIHIINACASSADLSLAREIHSQVVR-AGFGTDLLVDTALVHMYAKCGAIK 416

Query: 462 QALNIVESMPMKPNLALWGTLLLA 485
            A  + ++M  + ++  W  ++ A
Sbjct: 417 DARQVFDAMSRR-DVVSWSAMIGA 439


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 178/559 (31%), Positives = 293/559 (52%), Gaps = 47/559 (8%)

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           +F+++ + N      +I+   Q     +A   Y  M + G+  +  T+  +L +C     
Sbjct: 214 VFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEA 273

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
           L  G  IH  + + G   D+ V N LI MY KC  +  AR +F+    +D++SW+ ++ G
Sbjct: 274 LNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAG 333

Query: 188 FVECGEMGKAREVFDEM-------------PQKDAI------------------------ 210
           + + G   K +E  DE+             P K                           
Sbjct: 334 YAQSGY--KDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELS 391

Query: 211 --------SWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQ 262
                   S    I     K G I  A  +F  M  K++++W S +  Y K GDL +A++
Sbjct: 392 KVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEK 451

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F+EMP RNV SW++MI GYAQ+G+  +   L   M  +G +PD ++V+  + AC  +  
Sbjct: 452 VFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAG 511

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
           L+ GK +H    +  +  D +V T+LI MY KCG + EAR +F  M+ ++ +++N M+AG
Sbjct: 512 LERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAG 571

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
            G +G G EA+  F +M  E +  +++    V+ ACS +GL  EG  IF+ M+    + P
Sbjct: 572 YGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTP 631

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
           + +HY C+VDLL RAG L++A   ++SMP +P++++W  LL AC++H NV LAE     +
Sbjct: 632 RKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHI 691

Query: 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
           +EL+     +Y+ LSNIYA AG W+ + ++R++M  R +KK+ G S IEIDG I  FV+ 
Sbjct: 692 LELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAE 751

Query: 563 EIFDVQSEELELVIQSFVK 581
           +    + + +   +++  K
Sbjct: 752 DCAHPEIDAIHAELETLTK 770



 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 128/474 (27%), Positives = 229/474 (48%), Gaps = 49/474 (10%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  AE++F ++   +    ++MI  Y  +++P KA   +  M    +  +  T+  +LK
Sbjct: 106 DVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILK 165

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC     L +G +IH  V  MG   DV V   LI MYSKCG +  A  VF     +++VS
Sbjct: 166 ACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVS 225

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHM 236
           W  +++   +  ++ +A E++++M Q     +A+++  +++     +  ++  R +  H+
Sbjct: 226 WTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEA-LNRGRRIHSHI 284

Query: 237 PIK----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG-----N 287
             +    D+I  N++I  Y K   +  A+++F+ M +R+V SWS MI GYAQ G     +
Sbjct: 285 SERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKES 344

Query: 288 PKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA 347
             E   L   M  +GV P+ ++ M  + AC   GAL+ G+ IH  + +    +D  +QTA
Sbjct: 345 IDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTA 404

Query: 348 LIDMYMKCGSLDEARRIFYSMTKK-------------------------------NVISY 376
           + +MY KCGS+ EA ++F  M  K                               NV+S+
Sbjct: 405 IFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSW 464

Query: 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH-SGLATEGYRIFQSMK 435
           N+MIAG   NG   +  +  + M+ EG   D +  + +L AC   +GL  E  ++  +  
Sbjct: 465 NLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGL--ERGKLVHAEA 522

Query: 436 RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
              G+E      + L+ + S+ G++ +A  + + M  +  +A W  +L     H
Sbjct: 523 VKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVA-WNAMLAGYGQH 575



 Score =  187 bits (476), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 113/395 (28%), Positives = 202/395 (51%), Gaps = 18/395 (4%)

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           +K++GLLV++ TY  V++ C       +G  +H ++ ++G   D+++ N LI  YSK   
Sbjct: 47  IKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFED 106

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK 222
           +  A  VF    ++D+V+W+ ++  +       KA + F+ M   +     I      K 
Sbjct: 107 VASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKA 166

Query: 223 KGDIS---SARILFEHMPIK------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
             + S     R +  H  +K      D+    ++I  Y+K G++  A ++F++M ERNV 
Sbjct: 167 CNNYSILEKGRKI--HTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVV 224

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
           SW+ +I   AQH    EA  L+ +ML  G+ P+ ++ +  +++C    AL+ G+ IH  +
Sbjct: 225 SWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHI 284

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFG---- 389
               +  DMIV  ALI MY KC S+ EAR IF  M+K++VIS++ MIAG   +G+     
Sbjct: 285 SERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKES 344

Query: 390 -EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
            +E  +   +M  EG+  + + F+ +L AC+  G   +G +I   + +  G E      +
Sbjct: 345 IDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSK-VGFELDRSLQT 403

Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
            + ++ ++ G + +A  +   M  K N+  W + L
Sbjct: 404 AIFNMYAKCGSIYEAEQVFSKMANK-NVVAWTSFL 437



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 132/277 (47%), Gaps = 18/277 (6%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  AE++F+++   N    N MI GY Q+ +  K      +MK +G   D  T   +L+
Sbjct: 445 DLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILE 504

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           ACG L GL  G  +H E VK+G   D  V   LIGMYSKCG +  AR+VF+    +D V+
Sbjct: 505 ACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVA 564

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHM 236
           WN +L G+ + G+  +A ++F  M ++    + I+ + +I     + G +   R +F  M
Sbjct: 565 WNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISAC-SRAGLVQEGREIFRMM 623

Query: 237 -------PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNP 288
                  P K    +  M+D   + G L  A++    MP E ++  W  ++     H N 
Sbjct: 624 QEDFKMTPRKQ--HYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNV 681

Query: 289 KEALYLFREMLCQGVRPDVISVMGAISAC-AQVGALD 324
           + A      +L   + P   SV   +S   AQ G  D
Sbjct: 682 QLAERAAHHIL--ELEPSYASVYITLSNIYAQAGRWD 716



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 107/219 (48%), Gaps = 2/219 (0%)

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
           G  +EA+ L   +  +G+  +  +    I  CA+    + GK +H  +    + +D+ + 
Sbjct: 35  GRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLG 94

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
            +LI+ Y K   +  A ++F  MT ++V++++ MIA    N    +A   F +M    I 
Sbjct: 95  NSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIE 154

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
            + + FL +L AC++  +  +G +I  ++ +  G+E  +   + L+ + S+ GE+  A  
Sbjct: 155 PNRITFLSILKACNNYSILEKGRKI-HTIVKAMGMETDVAVATALITMYSKCGEISVACE 213

Query: 466 IVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE 504
           +   M  + N+  W  ++ A   H+ +  A  + E +++
Sbjct: 214 VFHKMTER-NVVSWTAIIQANAQHRKLNEAFELYEQMLQ 251


>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
          Length = 602

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 195/562 (34%), Positives = 308/562 (54%), Gaps = 50/562 (8%)

Query: 51  LMSLTSPN--------TLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSS--NPQKALSFY 100
           L  LT+PN        T+   +     +++   N ++ NTMIR   ++        L +Y
Sbjct: 20  LHPLTNPNKLPRIHGNTIATVEDPSAASRLDCANVFVWNTMIRKQVENGLITRDPPLLYY 79

Query: 101 VNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC 160
           +   R GL  + +T+ ++LKA      + EG E+H  VV+ GF C  FV   L+G Y  C
Sbjct: 80  MQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVAC 139

Query: 161 GHMGCARSVFEGSEIKDLVSWNLVLRGFV------------------------------- 189
           G +G  R VF+      LV W L++R +V                               
Sbjct: 140 GLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAVSTVV 199

Query: 190 -ECGEMG-----KAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
             CG +G     KA   F E    + DA   S +I  Y  + G +  A   F+  P+K++
Sbjct: 200 SACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTY-GECGSLDYAYRFFQETPMKNI 258

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
           + WN+MI    +  +L   +QLF  MP+R+V SW+ MI G+A+ G  +EAL  F EM   
Sbjct: 259 VVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFS 318

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
           GV P+ ++++  +SACA  GALD G WIH ++ ++ +  D  + ++LIDMY KCG +D+A
Sbjct: 319 GVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKA 378

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
            +IF   T++++ ++  ++ GL M+G GE+AL  F++M+   +  DD+  +GVL AC+H+
Sbjct: 379 VQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHA 438

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           GL  +G+  FQSM++  G+ PK+EHY  +VDLL R G L++A +++  MPM+ N  +WG 
Sbjct: 439 GLLDQGWWYFQSMEKVFGLVPKVEHYGXMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGA 498

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
            L ACR H NV L EV    L+ L   D    V+LSN+YA+   W+ ++ +RK ++K+ +
Sbjct: 499 FLSACRVHNNVELGEVAARRLLGLXPRDPWARVMLSNMYAEEAKWDRSMGLRKEIKKKGL 558

Query: 542 KKETGRSVIEIDGNIKEFVSGE 563
           KK  G S IE++G++  F+ G+
Sbjct: 559 KKSPGCSSIEVNGSVHGFLVGD 580


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 182/519 (35%), Positives = 306/519 (58%), Gaps = 9/519 (1%)

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           +F+++ + N      ++ G+ Q+ NP ++L  +  M   G+  +++T+   LKACG+L G
Sbjct: 29  VFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGVKPNDFTFSTNLKACGLLNG 88

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
           L  G +IH   VK GF     V N +I MYSKCG +  A  +FE   +++L+SWN ++ G
Sbjct: 89  LDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMIAG 148

Query: 188 FVECGEMGKAREVFDEMPQK----DAISWSIMID-----GYRKKKGDISSARILFEHMPI 238
           +   G   KA  +F +M +     D  +++  +      G  K+   I +  I    +  
Sbjct: 149 YTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYS 208

Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
            +     ++ID Y K G L  A+++F+ + E++V SW+ +I GYAQ GN  E++ LFR++
Sbjct: 209 VNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQL 268

Query: 299 LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
               ++ D   +   +   A    +  GK +H F  +    +D+ V  +++DMY+KCG +
Sbjct: 269 RESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMI 328

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
           +EA R+F  M  +NVIS+ VMI G G +G G+EA++ F +M+ +    DD+ +L VL+ C
Sbjct: 329 NEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGC 388

Query: 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
           SHSGL  +G   F  +  + GI+ ++EHY+C+VDLL RAG L++A N+V+SMP++ N+ +
Sbjct: 389 SHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGI 448

Query: 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
           W TLL ACR H ++ L + V   L+ L +++   YV++SNIYADAG W+   RIR++++ 
Sbjct: 449 WQTLLSACRVHGDLELGKEVGGILLRLDSENPVNYVMMSNIYADAGYWKECERIRELVKS 508

Query: 539 RKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           +K+KKE GRS +EID  +  F  G+     +E++  +++
Sbjct: 509 KKLKKEAGRSWVEIDKEVHFFYGGDDTHPLTEKIHEILK 547



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 180/365 (49%), Gaps = 34/365 (9%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +++A  +F  +   N    N MI GYT +   +KAL  +  M+  G  +D +T+   LKA
Sbjct: 124 INEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKA 183

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDV--FVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           C  L  + EG +IH  ++  GFL  V   V   LI +Y KCG +  AR VF   E K ++
Sbjct: 184 CSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVI 243

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI- 238
           SW  ++ G+ + G + ++ E+F ++ +      SI +DG+      +SS   +F    + 
Sbjct: 244 SWTALILGYAQEGNLAESMELFRQLRES-----SIQVDGFI-----LSSMMGVFADFALV 293

Query: 239 ----------------KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
                            D+   NS++D Y K G +  A++LF+EMP RNV SW++MI GY
Sbjct: 294 QQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGY 353

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK-WIHVFMKRSRITMD 341
            +HG  KEA+ LF EM      PD ++ +  +  C+  G ++ G+ +         I   
Sbjct: 354 GKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKAR 413

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG---FGEEALKCFA 397
           +     ++D+  + G L EA+ +  SM  + NV  +  +++   ++G    G+E      
Sbjct: 414 VEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILL 473

Query: 398 QMETE 402
           ++++E
Sbjct: 474 RLDSE 478



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 135/261 (51%), Gaps = 14/261 (5%)

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           DL+  N +I  Y K G L  A  +F+ M +RNV SW+ ++ G+ Q+GNP E+L LF +M 
Sbjct: 6   DLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMG 65

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
             GV+P+  +    + AC  +  LD+G+ IH    ++   M  +V  ++IDMY KCG ++
Sbjct: 66  LSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRIN 125

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           EA  +F  M  +N+IS+N MIAG  + GF E+AL  F +M+  G   D+  F   L ACS
Sbjct: 126 EAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACS 185

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYS-------CLVDLLSRAGELEQALNIVESMPM 472
             G   EG +I      H  +      YS        L+DL  + G+L  A  +   +  
Sbjct: 186 DLGAIKEGNQI------HAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEE 239

Query: 473 KPNLALWGTLLLACRNHQNVT 493
           K  ++ W  L+L      N+ 
Sbjct: 240 KHVIS-WTALILGYAQEGNLA 259



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 178/359 (49%), Gaps = 13/359 (3%)

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
           MGF  D+ + N LI MY KCG +G A  VF+    +++VSW  ++ G ++ G   ++  +
Sbjct: 1   MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 201 FDEMPQKDAISWSIMIDGYRKKKGDISSARI--LFEHMPIK---DLIS--WNSMIDGYAK 253
           F +M                K  G ++   I      + +K   D+++   NS+ID Y+K
Sbjct: 61  FSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSK 120

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313
            G +  A  +F  MP RN+ SW+ MI GY   G  ++AL LF++M   G   D  +    
Sbjct: 121 CGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTST 180

Query: 314 ISACAQVGALDLGKWIHVFMKRSRI--TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
           + AC+ +GA+  G  IH F+       +++  V  ALID+Y+KCG L  ARR+F  + +K
Sbjct: 181 LKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEK 240

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           +VIS+  +I G    G   E+++ F Q+    I  D  I   ++   +   L  +G ++ 
Sbjct: 241 HVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMH 300

Query: 432 Q-SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
             ++K   G++  +   + ++D+  + G + +A  +   MP + N+  W  ++     H
Sbjct: 301 AFAIKVPSGVDISV--CNSILDMYLKCGMINEAERLFSEMPAR-NVISWTVMITGYGKH 356


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 183/523 (34%), Positives = 295/523 (56%), Gaps = 11/523 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A R+F Q+ + +    NT+I G  +S   + +L  ++++ R GLL D +T   VL+
Sbjct: 347 SVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLR 406

Query: 121 ACGVLM-GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           AC  L      G ++H   +K G + D FV   LI +YSK G M  A  +F   +  DL 
Sbjct: 407 ACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLA 466

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR-------IL 232
           SWN ++ GF       +A  +F  M ++   +  I      K  G +   +       ++
Sbjct: 467 SWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVV 526

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
            +     DL   + ++D Y K G++ +A+++FN++P  +  +W+ +I G  ++G  ++AL
Sbjct: 527 IKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQAL 586

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
           + + +M   GV+PD  +    + AC+ + AL+ GK IH  + +     D  V T+L+DMY
Sbjct: 587 FTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMY 646

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCG++++A  +F  M  ++V  +N MI GL  +G  EEAL  F +M++ G+  D + F+
Sbjct: 647 AKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFI 706

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
           GVL ACSHSGL ++ Y+ F SM++  G+EP++EHYSCLVD LSRAG +++A  +V SMP 
Sbjct: 707 GVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPF 766

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           + +  ++ TLL ACR   +    E V E L  +   D   YVLLSNIYA A  WE+A+  
Sbjct: 767 EASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSA 826

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELV 575
           R MM++  +KKE G S I++   +  FV+G   D   EE +L+
Sbjct: 827 RNMMKRVNVKKEPGFSWIDMKNKVHLFVAG---DRSHEETDLI 866



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 214/452 (47%), Gaps = 15/452 (3%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A +LF      +  + N  +  Y Q+    +A+  + +M +  +  D+ TY  +L     
Sbjct: 250 ATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVAS 309

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L  L  G +IHG VV+ G+   V V N  I MY K G +  AR +F   +  DL+SWN V
Sbjct: 310 LNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTV 369

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMP------- 237
           + G    G    +  +F ++ +   +     I    +    +  +  +   +        
Sbjct: 370 ISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAG 429

Query: 238 -IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
            + D     ++ID Y+K G +  A+ LF+     ++ SW+ M+ G+    N +EAL LF 
Sbjct: 430 IVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFS 489

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
            M  +G + D I+   A  A   +  L  GK IH  + + R   D+ V + ++DMY+KCG
Sbjct: 490 LMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCG 549

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
            +  AR++F  +   + +++  +I+G   NG  E+AL  + QM   G+  D+  F  ++ 
Sbjct: 550 EMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVK 609

Query: 417 ACSHSGLATEGYRIFQS-MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
           ACS      +G +I  + MK +C  +P +   + LVD+ ++ G +E A  +   M  + +
Sbjct: 610 ACSLLTALEQGKQIHANIMKLNCAFDPFV--MTSLVDMYAKCGNIEDAYGLFRRMNTR-S 666

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
           +ALW  +++    H N   AE  +    E+K+
Sbjct: 667 VALWNAMIVGLAQHGN---AEEALNFFNEMKS 695



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 176/428 (41%), Gaps = 95/428 (22%)

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE--GSEIKDLVSWNLVL 185
           L+ G   H  +V  G   D +V N LI MY+KCG +  AR +F+      +DLV++N +L
Sbjct: 29  LILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAIL 88

Query: 186 RGFVECGEMG----------------------------------------KAREVFDEMP 205
             +   GE+                                          A E      
Sbjct: 89  AAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYA 148

Query: 206 QKDAISWSIMIDG----YRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIG------ 255
            K  + W + + G       K   I  AR+LF+ MP++D++ WN M+  Y ++G      
Sbjct: 149 VKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVL 208

Query: 256 -------------DLVAAQQLFNEMPERNVFS------------------------WSIM 278
                        D V+ + +   + ++ VF                         W+  
Sbjct: 209 GLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKT 268

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338
           +  Y Q G   EA+  FR+M+   V  D ++ +  +S  A +  L+LGK IH  + R   
Sbjct: 269 LSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGW 328

Query: 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
              + V  + I+MY+K GS++ ARR+F  M + ++IS+N +I+G   +G  E +L+ F  
Sbjct: 329 DQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFID 388

Query: 399 METEGIPKDDLIFLGVLIACSHSGLATEGY---RIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           +   G+  D      VL ACS      E Y   R   +     GI       + L+D+ S
Sbjct: 389 LLRSGLLPDQFTITSVLRACSS---LEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYS 445

Query: 456 RAGELEQA 463
           + G++E+A
Sbjct: 446 KGGKMEEA 453


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 164/434 (37%), Positives = 264/434 (60%), Gaps = 1/434 (0%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           DV   N ++  Y++ G M  AR +F+ + ++D+ +W  V+ G+ + G + +AR VFD MP
Sbjct: 98  DVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP 157

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
           +++A+SW+ M+  Y +++  +  A+ LF  MP +++ SWN+M+ GYA+ G L  A+ +F+
Sbjct: 158 ERNAVSWNAMVAAYIQRRM-MDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFD 216

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
            MP+++  SW+ M+  Y+Q G  +E L LF EM   G   +  +    +S CA + AL+ 
Sbjct: 217 TMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALEC 276

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
           G  +H  + R+   +   V  AL+ MY KCG++++AR  F  M +++V+S+N MIAG   
Sbjct: 277 GMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYAR 336

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           +GFG+EAL+ F  M T     DD+  +GVL ACSHSGL  +G   F SM    G+  K E
Sbjct: 337 HGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPE 396

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
           HY+C++DLL RAG L +A ++++ MP +P+  +WG LL A R H+N  L     E + EL
Sbjct: 397 HYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFEL 456

Query: 506 KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIF 565
           + ++ G+YVLLSNIYA +G W  A ++R MM +R +KK  G S IE+   +  F +G+  
Sbjct: 457 EPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCV 516

Query: 566 DVQSEELELVIQSF 579
             + E++   ++  
Sbjct: 517 HPEKEKIYAFLEDL 530



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 175/349 (50%), Gaps = 21/349 (6%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D    N +I  ++  G +  AR  F+ +  KD VSWN +L  +V  G + +AR +F+   
Sbjct: 5   DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT 64

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
           + D ISW+ ++ GY  + G +S AR LF+ MP +D++SWN M+ GYA+ GD+V A++LF+
Sbjct: 65  EWDVISWNALMSGY-VQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFD 123

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
             P R+VF+W+ ++ GYAQ+G  +EA  +F  M       + +S    ++A  Q   +D 
Sbjct: 124 AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM----PERNAVSWNAMVAAYIQRRMMDE 179

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
            K +   M       ++     ++  Y + G L+EA+ +F +M +K+ +S+  M+A    
Sbjct: 180 AKELFNMMP----CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQ 235

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS-----HSGLATEGYRIFQSMKRHCGI 440
            G  EE L+ F +M   G   +   F  VL  C+       G+   G  I       C +
Sbjct: 236 GGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFV 295

Query: 441 EPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
                  + L+ +  + G +E A N  E M  + ++  W T++     H
Sbjct: 296 G------NALLAMYFKCGNMEDARNAFEEMEER-DVVSWNTMIAGYARH 337



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 180/377 (47%), Gaps = 28/377 (7%)

Query: 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFE 234
           ++D V++N+++      G +  AR  FD  P+KDA+SW+ M+  Y  + G +  AR LF 
Sbjct: 3   VRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAY-VRNGRVEEARGLFN 61

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
                D+ISWN+++ GY + G +  A++LF+ MP R+V SW+IM+ GYA+ G+  EA  L
Sbjct: 62  SRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRL 121

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           F     +    DV +    +S  AQ G L+  + +   M       + +   A++  Y++
Sbjct: 122 FDAAPVR----DVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQ 173

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
              +DEA+ +F  M  +NV S+N M+ G    G  EEA   F  M      KD + +  +
Sbjct: 174 RRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQ----KDAVSWAAM 229

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L A S  G + E  ++F  M R CG       ++C++   +    LE  + +   + ++ 
Sbjct: 230 LAAYSQGGCSEETLQLFIEMGR-CGEWVNRSAFACVLSTCADIAALECGMQLHGRL-IRA 287

Query: 475 NLALW---GTLLLA----CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWE 527
              +    G  LLA    C N ++   A        E++  D   +  +   YA  G  +
Sbjct: 288 GYGVGCFVGNALLAMYFKCGNMEDARNA------FEEMEERDVVSWNTMIAGYARHGFGK 341

Query: 528 HALRIRKMMRKRKIKKE 544
            AL I  MMR    K +
Sbjct: 342 EALEIFDMMRTTSTKPD 358



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 9/237 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +++A+ +F+ + Q +      M+  Y+Q    ++ L  ++ M R G  V+   +  VL  
Sbjct: 208 LEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLST 267

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  +  L  G ++HG +++ G+    FV N L+ MY KCG+M  AR+ FE  E +D+VSW
Sbjct: 268 CADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSW 327

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR---KKKGDISSARILFEHMPI 238
           N ++ G+   G   +A E+FD M         I + G        G +      F  M  
Sbjct: 328 NTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHH 387

Query: 239 KDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPK 289
              ++     +  MID   + G L  A  L  +MP E +   W  ++     H NP+
Sbjct: 388 DFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPE 444



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 121/251 (48%), Gaps = 20/251 (7%)

Query: 236 MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
           MP++D +++N MI  +A  G +  A+  F+  PE++  SW+ M+  Y ++G  +EA  LF
Sbjct: 1   MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 60

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
                     DVIS    +S   Q G +   + +   M       D++    ++  Y + 
Sbjct: 61  NSR----TEWDVISWNALMSGYVQWGKMSEARELFDRMP----GRDVVSWNIMVSGYARR 112

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
           G + EARR+F +   ++V ++  +++G   NG  EEA + F     + +P+ + +    +
Sbjct: 113 GDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVF-----DAMPERNAVSWNAM 167

Query: 416 IACS-HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           +A      +  E   +F  M   C     +  ++ ++   ++AG LE+A  + ++MP K 
Sbjct: 168 VAAYIQRRMMDEAKELFNMMP--C---RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKD 222

Query: 475 NLALWGTLLLA 485
            ++ W  +L A
Sbjct: 223 AVS-WAAMLAA 232



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 40/224 (17%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           NM+ A   F ++ + +    NTMI GY +    ++AL  +  M+      D+ T   VL 
Sbjct: 308 NMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLA 367

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC            H  +V+ G +   + ++   G+ +K  H  C         + DL+ 
Sbjct: 368 ACS-----------HSGLVEKG-ISYFYSMHHDFGVTAKPEHYTC---------MIDLLG 406

Query: 181 WNLVLRGFVECGEMGKAREVFDEMP-QKDAISWSIMIDG---YRKKKGDISSARILFEHM 236
                      G + +A ++  +MP + D+  W  ++     +R  +   S+A  +FE  
Sbjct: 407 ---------RAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELE 457

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV-----FSW 275
           P ++   +  + + YA  G    A+++   M ER V     FSW
Sbjct: 458 P-ENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSW 500


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 183/563 (32%), Positives = 308/563 (54%), Gaps = 66/563 (11%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERL-FNQIY 73
           +V +L+   +     ++ AQ+   +L    + L++LL  +T+   + +    RL F+Q++
Sbjct: 11  VVRILERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLH 70

Query: 74  QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
            PN +    +IR Y       +ALSFY +M+++ +   ++T+  +  AC  +     G +
Sbjct: 71  TPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQ 130

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           +H + + +G       VN                              N V+  +V+CG 
Sbjct: 131 LHAQTLLLGGFSSDLYVN------------------------------NAVIDMYVKCGS 160

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAK 253
           +                                  AR++F+ MP +D+ISW  +I  Y +
Sbjct: 161 L--------------------------------RCARMVFDEMPERDVISWTGLIVAYTR 188

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313
           IGD+ AA+ LF+ +P +++ +W+ M+ GYAQ+  P +AL +FR +  +GV  D ++++G 
Sbjct: 189 IGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGV 248

Query: 314 ISACAQVGALDLGKWIHVFMKRSRITM--DMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
           ISACAQ+GA     WI    + S   +  +++V +ALIDMY KCG+++EA  +F  M ++
Sbjct: 249 ISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRER 308

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           NV SY+ MI G  ++G    A+K F  M   G+  + + F+GVL ACSH+GL  +G ++F
Sbjct: 309 NVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLF 368

Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN 491
            SM++  G+ P  E Y+C+ DLLSRAG LE+AL +VE+MPM+ + A+WG LL A   H N
Sbjct: 369 ASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGN 428

Query: 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
             +AE+  + L EL+ D+ G Y+LLSN YA AG W+   ++RK++R++ +KK  G S +E
Sbjct: 429 PDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVE 488

Query: 552 I-DGNIKEFVSGEIFDVQSEELE 573
             +G I +FV+G++   +  E++
Sbjct: 489 AKNGMIHKFVAGDVSHPKINEIK 511


>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 474

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 175/436 (40%), Positives = 270/436 (61%), Gaps = 3/436 (0%)

Query: 153 LIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISW 212
           L GM    G +  A  VF     K++V W  ++ G++   ++  AR  FD  P++D + W
Sbjct: 34  LFGMLCLMGVIASANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLW 93

Query: 213 SIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
           + MI GY  + G++  AR LF+ MP +D++SWN++++GYA IGD+ A +++F++MPERNV
Sbjct: 94  NTMISGY-IEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNV 152

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHV 331
           FSW+ +I GYAQ+G   E L  F+ M+ +G V P+  ++   +SACA++GA D GKW+H 
Sbjct: 153 FSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHK 212

Query: 332 FMKR-SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
           + +      +D+ V+ ALIDMY KCG+++ A  +F  + ++++IS+N MI GL  +G G 
Sbjct: 213 YGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGT 272

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
           EAL  F +M+  GI  D + F+GVL AC H GL  +G   F SM     I P++EH  C+
Sbjct: 273 EALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCV 332

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           VDLLSRAG L QA+  +  MP+K +  +W TLL A + ++ V + EV +E L++L+  + 
Sbjct: 333 VDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNP 392

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570
             +V+LSNIY DAG ++ A R++  MR    KKE G S IE D  + +F S      ++E
Sbjct: 393 ANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGVSWIETDDGLVKFYSSGEKHPRTE 452

Query: 571 ELELVIQSFVKTTIER 586
           EL+ +++      I R
Sbjct: 453 ELQRILRELKSFNILR 468



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 42/222 (18%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D+ + N +I  Y + G+M  ARS+F+    +D++SWN VL G+   G+M     VFD+MP
Sbjct: 89  DIVLWNTMISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMP 148

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-----------------------DLI 242
           +++  SW+ +I GY  + G +S     F+ M  +                       D  
Sbjct: 149 ERNVFSWNGLIKGY-AQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFG 207

Query: 243 SW------------------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQ 284
            W                  N++ID Y K G +  A ++F  +  R++ SW+ MI+G A 
Sbjct: 208 KWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAA 267

Query: 285 HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326
           HG+  EAL LF EM   G+ PD ++ +G + AC  +G ++ G
Sbjct: 268 HGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDG 309



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 106/233 (45%), Gaps = 11/233 (4%)

Query: 58  NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDN-YTYP 116
           N  +M+  ER+F+ + + N +  N +I+GY Q+    + L  +  M  +G +V N  T  
Sbjct: 133 NIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMT 192

Query: 117 FVLKACGVLMGLVEGTEIHGEVVKMGF-LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI 175
            VL AC  L     G  +H     +G+   DV V N LI MY KCG +  A  VF+G + 
Sbjct: 193 LVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKR 252

Query: 176 KDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR---KKKGDISSARIL 232
           +DL+SWN ++ G    G   +A  +F EM         +   G     K  G +      
Sbjct: 253 RDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAY 312

Query: 233 FEHM-----PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMI 279
           F  M      + ++     ++D  ++ G L  A +  N+MP + +   W+ ++
Sbjct: 313 FNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLL 365


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 191/572 (33%), Positives = 308/572 (53%), Gaps = 55/572 (9%)

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK-----GLLVD------ 111
           D+A RLF+ +   +    N+M+ GYT++   +  L F+  M  +      L+VD      
Sbjct: 157 DEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVG 216

Query: 112 --NYTYPFVLKACG----VLMGLVEGTEIHGEVVKMGFLCD------VFVVNGLIGMYSK 159
             N ++ F  K         + ++ G    G++ +   L D      V   N +I  Y +
Sbjct: 217 DLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQ 276

Query: 160 CGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK------------ 207
             H+  A S+F     K+ +SW  V+ G+V  G++ +AR++ ++MP +            
Sbjct: 277 NCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGY 336

Query: 208 -------------------DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMI 248
                              D + W+ MI GY  + G +  A  LF+ M  KD++SWN+M+
Sbjct: 337 VQNKRMDDARQIFNQISIRDVVCWNTMIAGY-SQCGRMDEALHLFKQMVKKDIVSWNTMV 395

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
             YA++G + AA ++F EM E+N+ SW+ +I G  Q+G+  +AL  F  M  +G +PD  
Sbjct: 396 ASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQS 455

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           +    +S+CA + AL +GK +H  + +S    D+ V  ALI MY KCGS+  A  +F  +
Sbjct: 456 TFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDI 515

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
              +V+S+N +IA   +NG G EALK F +ME EG+  D++ F+G+L ACSH GL  +G 
Sbjct: 516 DHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGL 575

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
           ++F+ M +   IEP  EHY+C+VDLL RAG LE+A  +V  M +  N  +WG LL ACR 
Sbjct: 576 KLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRI 635

Query: 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRS 548
           H N+ LA+   E L+E +      YVLLSN+ A+AG W+   R+R++M+++  +K+ G S
Sbjct: 636 HGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWS 695

Query: 549 VIEIDGNIKEFVSGEIFDVQSEELELVIQSFV 580
            IE+   +  F+S +    ++ EL  +++S  
Sbjct: 696 WIELQNRVHAFLSEDPAHPRAVELCHILRSLT 727



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 215/427 (50%), Gaps = 42/427 (9%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDN-----YTYP 116
           +D+A ++F  +   NT  HN+MI  + ++     A   +  M ++ ++  N     Y + 
Sbjct: 31  IDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHN 90

Query: 117 FVLKACGVLMGLVEGTEIH------------GEVVKMGFLCDVF-------VVNGLIGMY 157
             ++    L   +   +++            GE+ K   L ++          N ++  Y
Sbjct: 91  DRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGY 150

Query: 158 SKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMID 217
           +K      AR +F+    KDLVSWN +L G+   GEM    + F+EM ++D +SW++M+D
Sbjct: 151 AKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVD 210

Query: 218 GYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSI 277
           G+  + GD++S+   FE +P  + +SW +M+ G+A+ G +  A++LF++MP RNV +W+ 
Sbjct: 211 GF-VEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNA 269

Query: 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337
           MI  Y Q+ +  EA+ LF EM       + IS    I+   ++G LD  + +   M    
Sbjct: 270 MIAAYVQNCHVDEAISLFMEM----PEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRN 325

Query: 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFA 397
           +      QTA+I  Y++   +D+AR+IF  ++ ++V+ +N MIAG    G  +EAL  F 
Sbjct: 326 VA----AQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAGYSQCGRMDEALHLFK 381

Query: 398 QMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA 457
           QM    + KD + +  ++ + +  G      +IF+ MK     E  +  ++ L+  L++ 
Sbjct: 382 QM----VKKDIVSWNTMVASYAQVGQMDAAIKIFEEMK-----EKNIVSWNSLISGLTQN 432

Query: 458 GELEQAL 464
           G    AL
Sbjct: 433 GSYLDAL 439



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 184/392 (46%), Gaps = 74/392 (18%)

Query: 151 NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAI 210
           N +I  ++K G +  AR +F+G   +++VSWN ++  ++    + +AR++FD+MP +D  
Sbjct: 50  NSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLY 109

Query: 211 SWSIMIDGYRK-------------------------------KKGDISSARILFEHMPIK 239
           SW++MI  Y +                               K      AR LF+ MP K
Sbjct: 110 SWTLMITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAK 169

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE-- 297
           DL+SWNSM+ GY + G++    Q F EM ER+V SW++M+DG+ + G+   +   F +  
Sbjct: 170 DLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIP 229

Query: 298 ---------MLCQGVR----------------PDVISVMGAISACAQVGALDLGKWIHVF 332
                    MLC   R                 +V++    I+A  Q   +D    I +F
Sbjct: 230 NPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEA--ISLF 287

Query: 333 MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
           M+      + I  T +I+ Y++ G LDEAR++   M  +NV +   MI+G   N   ++A
Sbjct: 288 MEMPE--KNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDA 345

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIA-CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
            + F Q+        D++    +IA  S  G   E   +F+ M     ++  +  ++ +V
Sbjct: 346 RQIFNQISIR-----DVVCWNTMIAGYSQCGRMDEALHLFKQM-----VKKDIVSWNTMV 395

Query: 452 DLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
              ++ G+++ A+ I E M  K N+  W +L+
Sbjct: 396 ASYAQVGQMDAAIKIFEEMKEK-NIVSWNSLI 426


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 182/527 (34%), Positives = 306/527 (58%), Gaps = 13/527 (2%)

Query: 39  DLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALS 98
           D ++E  T+S   +     N   +++A  +F+++ + N      M+RGY +     +A +
Sbjct: 153 DKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAET 212

Query: 99  FYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHG--EVVKMGFLCDVFVVNGLIGM 156
            +  M  K           V+    +L GL++   I     +  M    DV     +IG 
Sbjct: 213 LFWQMPEKN----------VVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGG 262

Query: 157 YSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMI 216
           Y + G +  AR +F+    +++VSW  ++ G+V+  ++  AR++F+ MP+K+ +SW+ M+
Sbjct: 263 YCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAML 322

Query: 217 DGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
            GY    G +  A  LF  MPIK +++ N+MI  + + G++  A+Q+F++M E++  +WS
Sbjct: 323 KGY-TNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWS 381

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS 336
            MI  Y + G   +AL LFR M  +G+RP+  S++  +S CA +  LD G+ IH  + RS
Sbjct: 382 AMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRS 441

Query: 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF 396
           +  +D+ V + L+ MY+KCG+L +A+++F     K+V+ +N +I G   +G G EAL+ F
Sbjct: 442 QFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVF 501

Query: 397 AQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456
             M   GI  DD+ F+GVL ACS++G   +G  IF SM+    +E K+EHY+C+VDLL R
Sbjct: 502 HDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGR 561

Query: 457 AGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLL 516
           AG+L +A++++E MPM+ +  +WG LL ACR H  + LAEV  + L+ L+  + G ++LL
Sbjct: 562 AGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILL 621

Query: 517 SNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           SNIYA  G W+    +R+ MR R++ K  G S I ++  + +F  G+
Sbjct: 622 SNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGD 668



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 173/342 (50%), Gaps = 42/342 (12%)

Query: 143 FLCDVFVV--NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
           F C  F++  N LI  YS+ G +  AR VF+    K+++SWN ++ G+ +     +A+ +
Sbjct: 92  FYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNM 151

Query: 201 FDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAA 260
           FD+M +++ ISW+ ++ GY    G I+ AR +F+ MP ++++SW +M+ GY K G +  A
Sbjct: 152 FDKMSERNTISWNGLVSGY-INNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEA 210

Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
           + LF +MPE+NV SW++M+ G  Q G   EA  LF  M       DV++    I    QV
Sbjct: 211 ETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMM----PEKDVVTRTNMIGGYCQV 266

Query: 321 GALDLGKWIHVFMKRSRI----TM-----------------------DMIVQTALIDMYM 353
           G L   + +   M R  +    TM                       + +  TA++  Y 
Sbjct: 267 GRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYT 326

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
            CG LDEA  +F +M  K+V++ N MI   G NG   +A + F QM      KD+  +  
Sbjct: 327 NCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMRE----KDEGTWSA 382

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           ++      GL  +   +F+ M+R  GI P   ++  L+ +LS
Sbjct: 383 MIKVYERKGLELDALELFRMMQRE-GIRP---NFPSLISVLS 420



 Score = 45.1 bits (105), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 15  LVSLLQISK---TTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           L+S+L +        H  +I AQL  +    + +  S LL         N+ +A+++F++
Sbjct: 415 LISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCG--NLAKAKQVFDR 472

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
               +  M N++I GY Q     +AL  + +M   G++ D+ T+  VL AC     + +G
Sbjct: 473 FAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKG 532

Query: 132 TEI 134
            EI
Sbjct: 533 LEI 535


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 193/513 (37%), Positives = 299/513 (58%), Gaps = 19/513 (3%)

Query: 74  QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
           Q  T   N  +R   +  + Q+AL+ Y  M   G   + +T+PF  K+C  L   + G++
Sbjct: 18  QNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQ 77

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF-EGSEIKDL-VSWNLVLRGFVEC 191
           +HG V+K G   + FV   LI MY KC  +  AR VF E    ++L V +N ++ G+   
Sbjct: 78  LHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLN 137

Query: 192 GEMGKAREVFDEMPQKDAISWS--IMIDGYRKKKGDIS----------SARILFEHMPIK 239
                A  +F +M +K+ +S +   M+       G I           S R   +     
Sbjct: 138 SRFSDAVLLFRQM-RKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLD----G 192

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           DL   N ++  Y + G +  A++LF+ MPE+ + +W+ MI GYAQ+G     L L+R+M 
Sbjct: 193 DLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKME 252

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
             G+ PD ++++G +S+CA +GA   G+ +   ++ S    +  ++ ALI+MY +CG+L 
Sbjct: 253 FTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLV 312

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           +AR IF  MT+KNVIS+  +IAG GM+G GE A++ F +M +     D   F+ VL ACS
Sbjct: 313 KARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACS 372

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           H+GL  +G   F +M+R  G++P  EHYSC+VDLL RAG LE+A  ++ SM ++P+ A+W
Sbjct: 373 HAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVW 432

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
           G LL AC+ H+NV LAE+  E ++E +  + G YVLLSNI+++AG  E  LR+R MMR+R
Sbjct: 433 GALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRER 492

Query: 540 KIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           K+KKE G S +E  G I  F++G+    Q++E+
Sbjct: 493 KLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEI 525



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 169/343 (49%), Gaps = 24/343 (6%)

Query: 43  EPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYM--HNTMIRGYTQSSNPQKALSFY 100
           EPF  + L+      +T+    A ++F++ +        +N +I GY+ +S    A+  +
Sbjct: 90  EPFVQTSLISMYCKCSTIA--SARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLF 147

Query: 101 VNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC 160
             M+++G+ V+  T   ++  C   + L  GT +H   V+ G   D+ V N L+ MY +C
Sbjct: 148 RQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRC 207

Query: 161 GHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR 220
           G +  AR +F+G   K L++WN ++ G+ + G  G   +++ +M     +   + + G  
Sbjct: 208 GSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVL 267

Query: 221 KKKGDISS--------ARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
                + +         RI          +  N++I+ YA+ G+LV A+ +F+ M E+NV
Sbjct: 268 SSCAHLGAHAAGREVEQRIELSGFGFNPFLK-NALINMYARCGNLVKARAIFDGMTEKNV 326

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
            SW+ +I GY  HG  + A+ LF EM+     PD  + +  +SAC+  G  + G +    
Sbjct: 327 ISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTA 386

Query: 333 MKRSRITMDMIVQ------TALIDMYMKCGSLDEARRIFYSMT 369
           M+R     D  +Q      + ++D+  + G L+EAR++  SM+
Sbjct: 387 MER-----DYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMS 424


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 171/436 (39%), Positives = 272/436 (62%), Gaps = 9/436 (2%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE------CGEMGKARE 199
           ++F+ N +I  +S   +   A   +  S+ + L+  NL     V+      C  MG    
Sbjct: 83  NLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAH 142

Query: 200 --VFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDL 257
             +     +KD    + ++  Y    GD  +A ++F+ M   D++SW SMI G+ K GD+
Sbjct: 143 GHIIKHGFEKDVYVQNSLVHMY-ATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDV 201

Query: 258 VAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISAC 317
            +A++LF++MPE+N+ +WS MI GYAQ+ +  +A+ LF+ +  QGVR +   ++  IS+C
Sbjct: 202 ESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSC 261

Query: 318 AQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYN 377
           A +GAL+LG+  H ++ ++ +T+++I+ TAL+DMY +CGS+D+A  +F  + +++ +S+ 
Sbjct: 262 AHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWT 321

Query: 378 VMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRH 437
            +IAGL M+G+ E +LK FA M   G+   D+ F  VL ACSH GL   G++IF+SMKR 
Sbjct: 322 ALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRD 381

Query: 438 CGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEV 497
             +EP+LEHY C+VDLL RAG+LE+A   V  MP+KPN  +WG LL ACR H+N  + E 
Sbjct: 382 HRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGER 441

Query: 498 VVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIK 557
           V + L++L     G YVLLSNIYA+A  WE    +R+MM+ + +KK  G S+IE+DG + 
Sbjct: 442 VGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVH 501

Query: 558 EFVSGEIFDVQSEELE 573
           +F  G+    + +++E
Sbjct: 502 KFTIGDSSHPEMDKIE 517



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/403 (32%), Positives = 209/403 (51%), Gaps = 43/403 (10%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPN--TLNMDQAERL 68
           LKNP +  L+     TH+  I A +    +I + F  S+L+     P+  T  +D A R+
Sbjct: 16  LKNPKLFSLETCSDLTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRI 75

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           F+QI  PN ++ N MIRG++ S NP +A  FYV  +R+GLL DN T+PF++K+C  L  +
Sbjct: 76  FSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCI 135

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
             G++ HG ++K GF  DV+V N L+ MY+  G    A  +F+     D+VSW  ++RGF
Sbjct: 136 SMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGF 195

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK------------------------- 223
            +CG++  AR++FD+MP+K+ ++WS MI GY +                           
Sbjct: 196 NKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMV 255

Query: 224 --------------GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269
                         G+ +   ++   M + +LI   +++D YA+ G +  A  +F ++PE
Sbjct: 256 SVISSCAHLGALELGERAHDYVVKNGMTL-NLILGTALVDMYARCGSIDKAVWVFEDLPE 314

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329
           R+  SW+ +I G A HG  + +L  F  M+  G+ P  I+    +SAC+  G ++ G  I
Sbjct: 315 RDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQI 374

Query: 330 HVFMKRS-RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
              MKR  R+   +     ++D+  + G L+EA R    M  K
Sbjct: 375 FESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVK 417


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 182/527 (34%), Positives = 306/527 (58%), Gaps = 13/527 (2%)

Query: 39  DLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALS 98
           D ++E  T+S   +     N   +++A  +F+++ + N      M+RGY +     +A +
Sbjct: 153 DKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAET 212

Query: 99  FYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHG--EVVKMGFLCDVFVVNGLIGM 156
            +  M  K           V+    +L GL++   I     +  M    DV     +IG 
Sbjct: 213 LFWQMPEKN----------VVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGG 262

Query: 157 YSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMI 216
           Y + G +  AR +F+    +++VSW  ++ G+V+  ++  AR++F+ MP+K+ +SW+ M+
Sbjct: 263 YCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAML 322

Query: 217 DGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
            GY    G +  A  LF  MPIK +++ N+MI  + + G++  A+Q+F++M E++  +WS
Sbjct: 323 KGY-TNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWS 381

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS 336
            MI  Y + G   +AL LFR M  +G+RP+  S++  +S CA +  LD G+ IH  + RS
Sbjct: 382 AMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRS 441

Query: 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF 396
           +  +D+ V + L+ MY+KCG+L +A+++F     K+V+ +N +I G   +G G EAL+ F
Sbjct: 442 QFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVF 501

Query: 397 AQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456
             M   GI  DD+ F+GVL ACS++G   +G  IF SM+    +E K+EHY+C+VDLL R
Sbjct: 502 HDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGR 561

Query: 457 AGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLL 516
           AG+L +A++++E MPM+ +  +WG LL ACR H  + LAEV  + L+ L+  + G ++LL
Sbjct: 562 AGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILL 621

Query: 517 SNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           SNIYA  G W+    +R+ MR R++ K  G S I ++  + +F  G+
Sbjct: 622 SNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGD 668



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/342 (31%), Positives = 173/342 (50%), Gaps = 42/342 (12%)

Query: 143 FLCDVFVV--NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
           F C  F++  N LI  YS+ G +  AR VF+    K+++SWN ++ G+ +     +A+ +
Sbjct: 92  FYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNM 151

Query: 201 FDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAA 260
           FD+M +++ ISW+ ++ GY    G I+ AR +F+ MP ++++SW +M+ GY K G +  A
Sbjct: 152 FDKMSERNTISWNGLVSGY-INNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEA 210

Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
           + LF +MPE+NV SW++M+ G  Q G   EA  LF  M       DV++    I    QV
Sbjct: 211 ETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMM----PEKDVVTRTNMIGGYCQV 266

Query: 321 GALDLGKWIHVFMKRSRI----TM-----------------------DMIVQTALIDMYM 353
           G L   + +   M R  +    TM                       + +  TA++  Y 
Sbjct: 267 GRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYT 326

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
            CG LDEA  +F +M  K+V++ N MI   G NG   +A + F QM      KD+  +  
Sbjct: 327 NCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMRE----KDEGTWSA 382

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           ++      GL  +   +F+ M+R  GI P   ++  L+ +LS
Sbjct: 383 MIKVYERKGLELDALELFRMMQRE-GIRP---NFPSLISVLS 420



 Score = 45.1 bits (105), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 15  LVSLLQISK---TTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           L+S+L +        H  +I AQL  +    + +  S LL         N+ +A+++F++
Sbjct: 415 LISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCG--NLAKAKQVFDR 472

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
               +  M N++I GY Q     +AL  + +M   G++ D+ T+  VL AC     + +G
Sbjct: 473 FAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKG 532

Query: 132 TEI 134
            EI
Sbjct: 533 LEI 535


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 179/514 (34%), Positives = 290/514 (56%), Gaps = 24/514 (4%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFY--VNMKRKGLLVDNYTYPFVLKA 121
           +A RLF+++ +P+     T+I GY +    ++A   +  V+ K+            V+  
Sbjct: 85  EARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKN-----------VVTW 133

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVV--NGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
             ++ G +   +I         + +  VV  N +I  Y++ G +  A  +FE    +++V
Sbjct: 134 TAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVV 193

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239
           SWN V+    +CG + +AR +FD MP++D ISW+ MI G       +  A  LFE MP +
Sbjct: 194 SWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGL------LDEALDLFERMPER 247

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           DL SWN+MI G  + GDL  A++LFNEMP++NV SW+ MI G  Q G  +EAL +F  ML
Sbjct: 248 DLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRML 307

Query: 300 -CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
              G +P+  + +  + AC+ +  L  G+ +H  + ++       V +ALI+MY KCG L
Sbjct: 308 STNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGEL 367

Query: 359 DEARRIFYS--MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
             AR++F     ++++++S+N +IA    +G+G+EA+  F +M   G   DD+ ++G+L 
Sbjct: 368 GTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLS 427

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
           ACSH+GL  EG + F  + +   I  + +HY+CLVDL  RAG L++A   +E +  KP+ 
Sbjct: 428 ACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSA 487

Query: 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
            +WG LL  C  H NV + +   + L+E++ ++ G Y+LLSNIYA  G W  A R+R  M
Sbjct: 488 RVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKM 547

Query: 537 RKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570
           + + +KK+ G S IE+   +  FV G+    QS+
Sbjct: 548 KDKGLKKQPGCSWIEVGNRVHVFVVGDKSHSQSK 581



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 131/402 (32%), Positives = 209/402 (51%), Gaps = 22/402 (5%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM- 204
           +V   N +I   SK G +  AR +F+     D+++W  V+ G+++CG + +AR +FD + 
Sbjct: 66  NVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVD 125

Query: 205 PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
            +K+ ++W+ M+ GY  +   IS A  LF  MP K+++SWN+MIDGYA+ G + +A  LF
Sbjct: 126 AKKNVVTWTAMVGGY-IRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLF 184

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
            +MPERNV SW+ ++   AQ G  +EA  LF  M       DVIS    I+     G LD
Sbjct: 185 EKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRM----PERDVISWTAMIA-----GLLD 235

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
               + +F +      D+     +I   ++ G L  AR++F  M KKNVIS+  MI G  
Sbjct: 236 EA--LDLFERMPE--RDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCV 291

Query: 385 MNGFGEEALKCFAQM-ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443
             G  EEALK F++M  T G   +   F+ VL ACS+     EG ++ Q + +    +  
Sbjct: 292 QEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDST 351

Query: 444 LEHYSCLVDLLSRAGELEQALNIVES-MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
               S L+++ S+ GEL  A  + +  M  + +L  W  ++ A  +H     A    + +
Sbjct: 352 FV-VSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEM 410

Query: 503 VE--LKADDCGLYVLLSNIYADAGMWEHALR-IRKMMRKRKI 541
            +   K DD   YV L +  + AG+ E  L+   ++++ R I
Sbjct: 411 RKSGFKPDDV-TYVGLLSACSHAGLVEEGLKYFDELVKDRSI 451



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 78/147 (53%), Gaps = 3/147 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM-KRKGLLVDNYTYPFVL 119
           ++ +A +LFN++ + N     TMI G  Q    ++AL  +  M    G   +  T+  VL
Sbjct: 264 DLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVL 323

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG--SEIKD 177
            AC  L GL EG ++H  + K  +    FVV+ LI MYSKCG +G AR +F+   +  +D
Sbjct: 324 GACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRD 383

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEM 204
           LVSWN ++  +   G   +A   F EM
Sbjct: 384 LVSWNGIIAAYAHHGYGKEAINFFKEM 410


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 158/361 (43%), Positives = 242/361 (67%), Gaps = 1/361 (0%)

Query: 218 GYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSI 277
           G   + GD  +AR LF+ MP   ++   +M+  YAK+G L  A++LF+ MP ++   W+ 
Sbjct: 173 GMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNA 232

Query: 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337
           MIDGY QHG P EAL LFR ML  GV PD ++++ A+SA AQ+G  + G+W+H ++K SR
Sbjct: 233 MIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSR 292

Query: 338 -ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF 396
            + ++  V TALIDMY KCGSL++A  +F S+  K+++ +N MI G  M+G   +AL+ F
Sbjct: 293 RVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMF 352

Query: 397 AQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456
           +Q+ ++G+   D+ F+G+L ACSHSGL  EG++ FQSM+    I PK+EHY C+VDLL R
Sbjct: 353 SQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGR 412

Query: 457 AGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLL 516
           AG +E+A ++V+SM + P+  +W +LL ACR H+N+ L + + + LV     + G+Y+LL
Sbjct: 413 AGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILL 472

Query: 517 SNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
           SNIYA  G WE   R+R MM+   I+KE G S IE+   + EFV+G++   +++E+  ++
Sbjct: 473 SNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAML 532

Query: 577 Q 577
           +
Sbjct: 533 E 533



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 155/348 (44%), Gaps = 43/348 (12%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D    L      P T  + + I  ++       AL+    M  +GL+  ++T    L A
Sbjct: 83  LDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPA 142

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C    GL  G  +H    K+    D +V   L+GMY++ G    AR++F+      +V  
Sbjct: 143 C---HGLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPV 199

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK-------------------- 221
             +L  + + G +  ARE+FD MP KD I W+ MIDGY +                    
Sbjct: 200 TAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVD 259

Query: 222 --------------KKGDISSARILFEHMPIKDLISWN-----SMIDGYAKIGDLVAAQQ 262
                         + G   S R L  ++     +  N     ++ID Y K G L  A  
Sbjct: 260 PDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVS 319

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +FN + ++++  W+ MI+GYA HG+ ++AL +F ++  QG+ P  I+ +G ++AC+  G 
Sbjct: 320 VFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGL 379

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTA-LIDMYMKCGSLDEARRIFYSMT 369
           +D G      M+     +  I     ++D+  + G ++EA  +  SMT
Sbjct: 380 VDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMT 427



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 111/264 (42%), Gaps = 35/264 (13%)

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           YA    L     L    P+     ++  I  ++  G    AL L  EML +G+ P   ++
Sbjct: 77  YAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTL 136

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM------------------- 351
             ++ AC     L LG+ +H +  +  +  D  V TAL+ M                   
Sbjct: 137 SSSLPACH---GLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPD 193

Query: 352 ------------YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
                       Y K G+LD+AR +F  M  K+ I +N MI G   +G   EAL+ F  M
Sbjct: 194 PHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWM 253

Query: 400 ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
              G+  D++  +  L A +  G A  G  +   +K    ++      + L+D+  + G 
Sbjct: 254 LRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGS 313

Query: 460 LEQALNIVESMPMKPNLALWGTLL 483
           LE A+++  S+  K ++ +W  ++
Sbjct: 314 LEDAVSVFNSIGDK-DIVVWNAMI 336



 Score = 39.7 bits (91), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A  +FN I   +  + N MI GY    + +KAL  +  ++ +GL   + T+  +L 
Sbjct: 313 SLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLN 372

Query: 121 AC 122
           AC
Sbjct: 373 AC 374


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 158/361 (43%), Positives = 242/361 (67%), Gaps = 1/361 (0%)

Query: 218 GYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSI 277
           G   + GD  +AR LF+ MP   ++   +M+  YAK+G L  A++LF+ MP ++   W+ 
Sbjct: 172 GMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNA 231

Query: 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337
           MIDGY QHG P EAL LFR ML  GV PD ++++ A+SA AQ+G  + G+W+H ++K SR
Sbjct: 232 MIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSR 291

Query: 338 -ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF 396
            + ++  V TALIDMY KCGSL++A  +F S+  K+++ +N MI G  M+G   +AL+ F
Sbjct: 292 RVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMF 351

Query: 397 AQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456
           +Q+ ++G+   D+ F+G+L ACSHSGL  EG++ FQSM+    I PK+EHY C+VDLL R
Sbjct: 352 SQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGR 411

Query: 457 AGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLL 516
           AG +E+A ++V+SM + P+  +W +LL ACR H+N+ L + + + LV     + G+Y+LL
Sbjct: 412 AGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILL 471

Query: 517 SNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
           SNIYA  G WE   R+R MM+   I+KE G S IE+   + EFV+G++   +++E+  ++
Sbjct: 472 SNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAML 531

Query: 577 Q 577
           +
Sbjct: 532 E 532



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 155/348 (44%), Gaps = 43/348 (12%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D    L      P T  + + I  ++       AL+    M  +GL+  ++T    L A
Sbjct: 82  LDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPA 141

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C    GL  G  +H    K+    D +V   L+GMY++ G    AR++F+      +V  
Sbjct: 142 C---HGLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPV 198

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK-------------------- 221
             +L  + + G +  ARE+FD MP KD I W+ MIDGY +                    
Sbjct: 199 TAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVD 258

Query: 222 --------------KKGDISSARILFEHMPIKDLISWN-----SMIDGYAKIGDLVAAQQ 262
                         + G   S R L  ++     +  N     ++ID Y K G L  A  
Sbjct: 259 PDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVS 318

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +FN + ++++  W+ MI+GYA HG+ ++AL +F ++  QG+ P  I+ +G ++AC+  G 
Sbjct: 319 VFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGL 378

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTA-LIDMYMKCGSLDEARRIFYSMT 369
           +D G      M+     +  I     ++D+  + G ++EA  +  SMT
Sbjct: 379 VDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMT 426



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 111/264 (42%), Gaps = 35/264 (13%)

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           YA    L     L    P+     ++  I  ++  G    AL L  EML +G+ P   ++
Sbjct: 76  YAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTL 135

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM------------------- 351
             ++ AC     L LG+ +H +  +  +  D  V TAL+ M                   
Sbjct: 136 SSSLPACH---GLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPD 192

Query: 352 ------------YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
                       Y K G+LD+AR +F  M  K+ I +N MI G   +G   EAL+ F  M
Sbjct: 193 PHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWM 252

Query: 400 ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
              G+  D++  +  L A +  G A  G  +   +K    ++      + L+D+  + G 
Sbjct: 253 LRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGS 312

Query: 460 LEQALNIVESMPMKPNLALWGTLL 483
           LE A+++  S+  K ++ +W  ++
Sbjct: 313 LEDAVSVFNSIGDK-DIVVWNAMI 335



 Score = 39.7 bits (91), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A  +FN I   +  + N MI GY    + +KAL  +  ++ +GL   + T+  +L 
Sbjct: 312 SLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLN 371

Query: 121 AC 122
           AC
Sbjct: 372 AC 373


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 179/557 (32%), Positives = 291/557 (52%), Gaps = 47/557 (8%)

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           +F ++ + N      +I+   Q     +A   Y  M + G+  +  T+  +L +C     
Sbjct: 236 IFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEA 295

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
           L  G  IH  + + G   DV V N LI MY KC  +  AR  F+    +D++SW+ ++ G
Sbjct: 296 LNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAG 355

Query: 188 FVECGEMGKAR--EVFD----------------------------EMPQKDAISWSIMID 217
           + + G   K    EVF                              + Q   I   I   
Sbjct: 356 YAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKV 415

Query: 218 GYRKKK-------------GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
           G+   +             G I  A  +F  M  K++++W S++  Y K GDL +A+++F
Sbjct: 416 GFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVF 475

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
           +EM  RNV SW++MI GYAQ G+  +   L   M  +G +PD ++++  + AC  + AL+
Sbjct: 476 SEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALE 535

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
            GK +H    +  +  D +V T+LI MY KCG + EAR +F  ++ ++ +++N M+AG G
Sbjct: 536 RGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYG 595

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444
            +G G EA+  F +M  E +P +++ F  V+ AC  +GL  EG  IF+ M+    ++P  
Sbjct: 596 QHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGK 655

Query: 445 EHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE 504
           +HY C+VDLL RAG L++A   ++ MP +P++++W  LL AC++H NV LAE     ++ 
Sbjct: 656 QHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILR 715

Query: 505 LKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEI 564
           L+  +  +YV LSNIYA AG W+ + ++RK+M  + +KK+ G S IEIDG I  FV+ + 
Sbjct: 716 LEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDC 775

Query: 565 ----FDVQSEELELVIQ 577
                D    ELE++ +
Sbjct: 776 AHPEIDSIHAELEMLTK 792



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/496 (26%), Positives = 241/496 (48%), Gaps = 19/496 (3%)

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           +K++GLLV++ TY  +++ C  L    +G  +H ++ ++G   D+++ N LI  YSK G 
Sbjct: 69  IKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGD 128

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK 222
           +     VF    ++D+V+W+ ++  +       KA + F+ M   +     I      K 
Sbjct: 129 VASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKA 188

Query: 223 KGDISSARILFE-HMPIK------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
             + S      E H  +K      D+    ++I  Y+K G++  A ++F +M ERNV SW
Sbjct: 189 CNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSW 248

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
           + +I   AQH    EA  L+ +ML  G+ P+ ++ +  +++C    AL+ G+ IH  +  
Sbjct: 249 TAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISE 308

Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFG-----E 390
             +  D++V  ALI MY KC  + +AR  F  M+K++VIS++ MIAG   +G+      +
Sbjct: 309 RGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLD 368

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
           E  +   +M  EG+  + + F+ +L ACS  G   +G +I   + +  G E      + +
Sbjct: 369 EVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISK-VGFESDRSLQTAI 427

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
            ++ ++ G + +A  +   M  K N+  W +LL       ++T AE V     E+   + 
Sbjct: 428 FNMYAKCGSIYEAEQVFSKMENK-NVVAWASLLTMYIKCGDLTSAEKV---FSEMSTRNV 483

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE--TGRSVIEIDGNIKEFVSGEIFDVQ 568
             + L+   YA +G       +   M+    + +  T  S++E  G +     G++   +
Sbjct: 484 VSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAE 543

Query: 569 SEELELVIQSFVKTTI 584
           + +L L   + V T++
Sbjct: 544 AVKLGLESDTVVATSL 559



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/468 (26%), Positives = 227/468 (48%), Gaps = 47/468 (10%)

Query: 66  ERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVL 125
           E++F ++   +    ++MI  Y  +++P KA   +  MK   +  +  T+  +LKAC   
Sbjct: 133 EQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNY 192

Query: 126 MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL 185
             L +  EIH  V   G   DV V   LI MYSKCG +  A  +F+  + +++VSW  ++
Sbjct: 193 SMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAII 252

Query: 186 RGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMPIK-- 239
           +   +  ++ +A E++++M Q     +A+++  +++     +  ++  R +  H+  +  
Sbjct: 253 QANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEA-LNRGRRIHSHISERGL 311

Query: 240 --DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG-NPKEAL---- 292
             D++  N++I  Y K   +  A++ F+ M +R+V SWS MI GYAQ G   KE+L    
Sbjct: 312 ETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVF 371

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            L   M  +GV P+ ++ M  + AC+  GAL+ G+ IH  + +     D  +QTA+ +MY
Sbjct: 372 QLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMY 431

Query: 353 MKCGSLDE-------------------------------ARRIFYSMTKKNVISYNVMIA 381
            KCGS+ E                               A ++F  M+ +NV+S+N+MIA
Sbjct: 432 AKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIA 491

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
           G   +G   +  +  + M+ EG   D +  + +L AC     A E  ++  +     G+E
Sbjct: 492 GYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALS-ALERGKLVHAEAVKLGLE 550

Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
                 + L+ + S+ GE+ +A  + + +  +  +A W  +L     H
Sbjct: 551 SDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVA-WNAMLAGYGQH 597



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/402 (26%), Positives = 184/402 (45%), Gaps = 51/402 (12%)

Query: 15  LVSLLQISKTTTHI---LQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
            VSLL    T   +    +I + ++   L T+    + L+      N +    A   F++
Sbjct: 283 FVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQ--DARETFDR 340

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQK-----ALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
           + + +    + MI GY QS    K            M+R+G+  +  T+  +LKAC V  
Sbjct: 341 MSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHG 400

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
            L +G +IH E+ K+GF  D  +   +  MY+KCG +  A  VF   E K++V+W  +L 
Sbjct: 401 ALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLT 460

Query: 187 GFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK------- 239
            +++CG++  A +VF EM  ++ +SW++MI GY  + GDI+    L   M ++       
Sbjct: 461 MYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGY-AQSGDIAKVFELLSSMKVEGFQPDRV 519

Query: 240 --------------------------------DLISWNSMIDGYAKIGDLVAAQQLFNEM 267
                                           D +   S+I  Y+K G++  A+ +F+++
Sbjct: 520 TIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKI 579

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK 327
             R+  +W+ M+ GY QHG   EA+ LF+ ML + V P+ I+    ISAC + G +  G+
Sbjct: 580 SNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGR 639

Query: 328 WIHVFMKRS-RITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
            I   M+   R+         ++D+  + G L EA      M
Sbjct: 640 EIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRM 681



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 142/318 (44%), Gaps = 37/318 (11%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  AE++F+++   N    N MI GY QS +  K      +MK +G   D  T   +L+
Sbjct: 467 DLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILE 526

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           ACG L  L  G  +H E VK+G   D  V   LIGMYSKCG +  AR+VF+    +D V+
Sbjct: 527 ACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVA 586

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKD 240
           WN +L G+ + G   +A ++F                            R+L E +P  +
Sbjct: 587 WNAMLAGYGQHGIGPEAVDLFK---------------------------RMLKERVPPNE 619

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS-----WSIMIDGYAQHGNPKEALYLF 295
            I++ ++I    + G +   +++F  M E          +  M+D   + G  +EA    
Sbjct: 620 -ITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFI 678

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
           + M C+   PD+      + AC     + L +W    + R   + +  V   L ++Y + 
Sbjct: 679 QRMPCE---PDISVWHALLGACKSHDNVQLAEWAAHHILRLEPS-NASVYVTLSNIYAQA 734

Query: 356 GSLDEARRIFYSMTKKNV 373
           G  D++ ++   M  K +
Sbjct: 735 GRWDDSTKVRKVMDDKGL 752


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 188/572 (32%), Positives = 305/572 (53%), Gaps = 55/572 (9%)

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKG-----LLVDNYTYPF 117
           + A+++F Q+   +   +N+M+ GYTQ+     AL F+ +M  +      L+V  Y    
Sbjct: 159 NDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSG 218

Query: 118 VLKACGVL------------MGLVEGTEIHGEVVKMGFLCD------VFVVNGLIGMYSK 159
            L +   L            + ++ G   +G++ +   L D      V   N +I  Y +
Sbjct: 219 DLSSAWQLFEKIPNPNAVSWVTMLCGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQ 278

Query: 160 CGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKD----------- 208
              +  A  +F+    KD VSW  ++ G++  G++ +AR+V+++MP KD           
Sbjct: 279 DLQVDEAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGL 338

Query: 209 --------------------AISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMI 248
                                + W+ MI GY  + G +  A  LF  MPIK+ +SWN+MI
Sbjct: 339 IQNGRIDEADQMFSRIGAHDVVCWNSMIAGY-SRSGRMDEALNLFRQMPIKNSVSWNTMI 397

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
            GYA+ G +  A ++F  M E+N+ SW+ +I G+ Q+    +AL     M  +G +PD  
Sbjct: 398 SGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQS 457

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           +    +SACA + AL +G  +H ++ +S    D+ V  ALI MY KCG +  A ++F  +
Sbjct: 458 TFACTLSACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDI 517

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
              ++IS+N +I+G  +NG+  +A K F QM +E +  D++ F+G+L ACSH+GLA +G 
Sbjct: 518 ECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGL 577

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
            IF+ M     IEP  EHYSCLVDLL R G LE+A N V  M +K N  LWG+LL ACR 
Sbjct: 578 DIFKCMIEDFAIEPLAEHYSCLVDLLGRVGRLEEAFNTVRGMKVKANAGLWGSLLGACRV 637

Query: 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRS 548
           H+N+ L     E L EL+  +   Y+ LSN++A+AG WE   R+R +MR ++  K+ G S
Sbjct: 638 HKNLELGRFAAERLFELEPHNASNYITLSNMHAEAGRWEEVERVRMLMRGKRAGKQPGCS 697

Query: 549 VIEIDGNIKEFVSGEIFDVQSEELELVIQSFV 580
            IE+   I+ F+S +   ++ + +++++ +  
Sbjct: 698 WIEVQNQIQHFLSHDPAKLRPKNIQIILNTLA 729



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 145/488 (29%), Positives = 246/488 (50%), Gaps = 45/488 (9%)

Query: 9   FSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERL 68
           F+    ++ L ++ K    I +I   +T  +L+T        ++S+ + N    D A +L
Sbjct: 18  FNHNRQIIQLGKLGKVEEAI-RIFFNMTHKNLVT-----YNSMISVLAKNARIRD-ARQL 70

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           F+Q+   N    NTMI GY  ++  ++A   +  M  +    DN+++  ++  C    G 
Sbjct: 71  FDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMPER----DNFSWALMI-TCYTRKGK 125

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
           +E      E+V      D    N +I  Y+K G    A+ VFE    KDLVS+N +L G+
Sbjct: 126 LEKARELLELVPDKL--DTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGY 183

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMI 248
            + G+M  A + F+ M +++ +SW++M+ GY  K GD+SSA  LFE +P  + +SW +M+
Sbjct: 184 TQNGKMHLALQFFESMTERNVVSWNLMVAGY-VKSGDLSSAWQLFEKIPNPNAVSWVTML 242

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
            G AK G +  A++LF+ MP +NV SW+ MI  Y Q     EA+ LF++M       D +
Sbjct: 243 CGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKM----PHKDSV 298

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           S    I+   +VG LD  + ++  M       D+  QTAL+   ++ G +DEA ++F  +
Sbjct: 299 SWTTIINGYIRVGKLDEARQVYNQMP----CKDITAQTALMSGLIQNGRIDEADQMFSRI 354

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
              +V+ +N MIAG   +G  +EAL  F QM      K+ + +  ++   + +G      
Sbjct: 355 GAHDVVCWNSMIAGYSRSGRMDEALNLFRQMPI----KNSVSWNTMISGYAQAGQMDRAT 410

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA--LNIVESMPM------KPNLALWG 480
            IFQ+M+     E  +  ++ L+     AG L+    L+ ++S+ M      KP+ + + 
Sbjct: 411 EIFQAMR-----EKNIVSWNSLI-----AGFLQNNLYLDALKSLVMMGKEGKKPDQSTFA 460

Query: 481 TLLLACRN 488
             L AC N
Sbjct: 461 CTLSACAN 468


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 184/550 (33%), Positives = 296/550 (53%), Gaps = 83/550 (15%)

Query: 74  QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
           + + Y  N++I  + +S +  +AL  + +M++  L  +  T+P  +K+C  L  L  G +
Sbjct: 48  KTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQ 107

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           IH +    G+  D+FV + LI MYSKCG++                              
Sbjct: 108 IHQQAFVFGYGSDIFVASALIDMYSKCGYLN----------------------------- 138

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW--------- 244
              AR++FDE+P+++ +SW+ MI GY + +     A  LF+   + D   +         
Sbjct: 139 --DARKLFDEIPERNVVSWTSMISGYVQNE-RAREAVFLFKEFLLVDETDYDEIVGVGVG 195

Query: 245 -----------------------------------------NSMIDGYAKIGDLVAAQQL 263
                                                    N+++D YAK G++  ++++
Sbjct: 196 VDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKV 255

Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGA 322
           F+ M E +V SW+ +I  YAQ+G   EA  LF +M+ +G VR + +++   + ACA  GA
Sbjct: 256 FDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGA 315

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
           L +GK IH  + +  +  +++V T+++DMY KCG ++ AR+ F  + +KNV S+ VM+AG
Sbjct: 316 LQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAG 375

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
            GM+G G+EA+K F +M   GI  + + F+ VL ACSH+GL  EG+  F  MK    +EP
Sbjct: 376 YGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEP 435

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
            +EHYSC+VDLL RAG L++A  +++ M +KP+  +WG+LL ACR H+NV L E+    L
Sbjct: 436 GIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKL 495

Query: 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
            +L   +CG YVLLSNIYADAG W+   R+R +M+   + K  G S++E  G +  F+ G
Sbjct: 496 FKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVG 555

Query: 563 EIFDVQSEEL 572
           +    Q E++
Sbjct: 556 DKEHPQHEKI 565



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 176/367 (47%), Gaps = 32/367 (8%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           QI  Q       ++ F  S L+   +    LN   A +LF++I + N     +MI GY Q
Sbjct: 107 QIHQQAFVFGYGSDIFVASALIDMYSKCGYLN--DARKLFDEIPERNVVSWTSMISGYVQ 164

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYP---------------FVLKACGVLMGLVEGTEI 134
           +   ++A+  +    ++ LLVD   Y                 V+ AC  +        +
Sbjct: 165 NERAREAVFLF----KEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECV 220

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           HG  VK GF   + V N L+  Y+KCG +  +R VF+G E  D+ SWN ++  + + G  
Sbjct: 221 HGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLS 280

Query: 195 GKAREVFDEMPQK-----DAISWSIMIDGYRKKKGDISSARILFEH---MPIKD-LISWN 245
            +A  +F +M ++     +A++ S ++       G +   + + +    M ++D L+   
Sbjct: 281 VEAFSLFSDMVKRGEVRYNAVTLSAVLLAC-AHSGALQIGKCIHDQVVKMELEDNLVVGT 339

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           S++D Y K G +  A++ F+ +  +NV SW++M+ GY  HG+ KEA+ +F EM+  G++P
Sbjct: 340 SIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKP 399

Query: 306 DVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           + I+ +  ++AC+  G L  G  W +       +   +   + ++D+  + G L EA  +
Sbjct: 400 NYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGL 459

Query: 365 FYSMTKK 371
              M  K
Sbjct: 460 IQEMKVK 466


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 179/491 (36%), Positives = 284/491 (57%), Gaps = 9/491 (1%)

Query: 74  QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
           Q   +  N +I    +S +   AL  +  M+ K  +  N     + K    +M   E  +
Sbjct: 58  QDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMM---EAHQ 114

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           +  E+ +     D F  N ++  Y +  +   A+S F+    KD  SWN ++ G+   GE
Sbjct: 115 LFDEIPEP----DTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGE 170

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAK 253
           M KARE+F  M +K+ +SW+ MI GY  + GD+  A   F+  P++ +++W +MI GY K
Sbjct: 171 MEKARELFYSMMEKNEVSWNAMISGY-IECGDLEKASHFFKVAPVRGVVAWTAMITGYMK 229

Query: 254 IGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
              +  A+ +F +M   +N+ +W+ MI GY ++  P++ L LFR ML +G+RP+   +  
Sbjct: 230 AKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSS 289

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
           A+  C+++ AL LG+ IH  + +S +  D+   T+LI MY KCG L +A ++F  M KK+
Sbjct: 290 ALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKD 349

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
           V+++N MI+G   +G  ++AL  F +M    I  D + F+ VL+AC+H+GL   G   F+
Sbjct: 350 VVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFE 409

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV 492
           SM R   +EP+ +HY+C+VDLL RAG+LE+AL ++ SMP +P+ A++GTLL ACR H+NV
Sbjct: 410 SMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNV 469

Query: 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
            LAE   E L++L + +   YV L+NIYA    WE   R+RK M++  + K  G S IEI
Sbjct: 470 ELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEI 529

Query: 553 DGNIKEFVSGE 563
              +  F S +
Sbjct: 530 RNKVHHFRSSD 540



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 172/370 (46%), Gaps = 40/370 (10%)

Query: 18  LLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNT 77
           L+ ISK  + +++   QL   D I EP T S  +M       +N ++A+  F+++   + 
Sbjct: 99  LIGISKDPSRMMEA-HQLF--DEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDA 155

Query: 78  YMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGE 137
              NTMI GY +    +KA   + +M  K  +  N      ++ CG L       E    
Sbjct: 156 ASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIE-CGDL-------EKASH 207

Query: 138 VVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI-KDLVSWNLVLRGFVECGEMGK 196
             K+  +  V     +I  Y K   +  A ++F+   + K+LV+WN ++ G+VE      
Sbjct: 208 FFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPED 267

Query: 197 AREVFDEMPQKDAISWSIMIDGYRKKKGDISSA-----------------RILFEHMPIK 239
             ++F  M          + +G R     +SSA                 +I+ +     
Sbjct: 268 GLKLFRAM----------LEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCN 317

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           D+ +  S+I  Y K G+L  A +LF  M +++V +W+ MI GYAQHGN  +AL LFREM+
Sbjct: 318 DVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMI 377

Query: 300 CQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
              +RPD I+ +  + AC   G +++G  +    ++  ++       T ++D+  + G L
Sbjct: 378 DNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKL 437

Query: 359 DEARRIFYSM 368
           +EA ++  SM
Sbjct: 438 EEALKLIRSM 447


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 178/513 (34%), Positives = 284/513 (55%), Gaps = 36/513 (7%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
             ++F+++   N   +N MIR Y  +      L  +  M   G   DNYTYP VLKAC  
Sbjct: 72  TRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSC 131

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
              L  G  IHG+V+K+G   ++FV NGLI MY KCG       +FE             
Sbjct: 132 SENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCG------CLFE------------- 172

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK---KGDISSARILFEHMPIKDL 241
                       AR VFDEM  KD +SW+ M+ GY         +   R + ++    D 
Sbjct: 173 ------------ARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDG 220

Query: 242 ISWNSMIDGYAKIG--DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
            +  S++   A     +++  +++F  +  +N+ SW++MI  Y ++  P +A+ L+ +M 
Sbjct: 221 CTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQME 280

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
              V PD I+    + AC  + AL LG+ IH ++++ ++  +++++ +LIDMY +CG LD
Sbjct: 281 KCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLD 340

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           +A+R+F  M  ++V S+  +I+  GM G G  A+  F +M   G   D + F+ +L ACS
Sbjct: 341 DAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACS 400

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           HSGL  EG   F+ M     I P++EHY+CLVDLL RAG +++A NI++ MP++PN  +W
Sbjct: 401 HSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVW 460

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
            TLL +CR   N+ +  +  + L++L  +  G YVLLSNIYA AG W+    IR +M+++
Sbjct: 461 ATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRK 520

Query: 540 KIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           KI+K  G S +E++  +  F++G+    QS+E+
Sbjct: 521 KIRKTPGISNVELNNQVHTFLAGDTSHPQSKEI 553



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 152/308 (49%), Gaps = 15/308 (4%)

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           ++  YA  G+    +++F+EM +RNV  +++MI  Y  +    + L +FREM+  G RPD
Sbjct: 59  LMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPD 118

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
             +    + AC+    L  G  IH  + +  +  ++ V   LI MY KCG L EARR+F 
Sbjct: 119 NYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFD 178

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            M  K+V+S+N M+AG   N   ++AL+   +ME  G   D      ++ A +++     
Sbjct: 179 EMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENV 238

Query: 427 GY--RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI---VESMPMKPNLALWGT 481
            Y  +IF +++R       L  ++ ++ +  +     QA+++   +E   ++P+   + +
Sbjct: 239 LYVEKIFVNLER-----KNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFAS 293

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL---LSNIYADAGMWEHALRIRKMMRK 538
           +L AC +   + L   + E + + K   C   +L   L ++YA  G  + A R+   M+ 
Sbjct: 294 VLPACGDLSALLLGRRIHEYVEKKKL--CPNLLLENSLIDMYARCGCLDDAKRVFDRMKF 351

Query: 539 RKIKKETG 546
           R +   T 
Sbjct: 352 RDVASWTS 359



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 121/244 (49%), Gaps = 11/244 (4%)

Query: 46  TLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKR 105
           T++ L+ ++ + ++ N+   E++F  + + N    N MIR Y ++S P +A+  Y+ M++
Sbjct: 222 TMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEK 281

Query: 106 KGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGC 165
             +  D  T+  VL ACG L  L+ G  IH  V K     ++ + N LI MY++CG +  
Sbjct: 282 CRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDD 341

Query: 166 ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRK 221
           A+ VF+  + +D+ SW  ++  +   G+   A  +F EM       D+I++  ++     
Sbjct: 342 AKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSAC-S 400

Query: 222 KKGDISSARILFEHMPIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSW 275
             G +   RI F+ M     I+     +  ++D   + G +  A  +  +MP E N   W
Sbjct: 401 HSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVW 460

Query: 276 SIMI 279
           + ++
Sbjct: 461 ATLL 464


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 158/337 (46%), Positives = 231/337 (68%)

Query: 236 MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
           MP K L+S  +MI  YAK G +  A+ LF+ + ER+   W++MIDGYAQHG P E L LF
Sbjct: 1   MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
           R+ML   VRP+ ++V+  +SAC Q GAL+ G+W+H +++ + I +++ V T+LIDMY KC
Sbjct: 61  RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKC 120

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
           GSL++AR +F  ++ K+V+++N M+ G  M+GF ++AL+ F +M   G    D+ F+GVL
Sbjct: 121 GSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVL 180

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
            ACSH+GL +EG++ F SMK   GIEPK+EHY C+V+LL RAG LE+A  +V++M +  +
Sbjct: 181 NACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQD 240

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535
             LWGTLL ACR H N+ L E + E LV     + G YVLLSNIYA AG WE   R+R +
Sbjct: 241 PVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTL 300

Query: 536 MRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           M++   +KE G S IE++  + EF++G++   +S E+
Sbjct: 301 MKESGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREI 337



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 128/303 (42%), Gaps = 83/303 (27%)

Query: 176 KDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEH 235
           K LVS   ++  + + G + +AR +FD + ++DAI W++MIDGY  + G  +   +LF  
Sbjct: 4   KSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGY-AQHGLPNEGLLLFRQ 62

Query: 236 M------P-----------------------IKDLISWN----------SMIDGYAKIGD 256
           M      P                       +   I  N          S+ID Y+K G 
Sbjct: 63  MLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGS 122

Query: 257 LVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISA 316
           L  A+ +F  +  ++V +W+ M+ GYA HG  ++AL LF+EM   G +P  I+ +G ++A
Sbjct: 123 LEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNA 182

Query: 317 CAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK----- 371
           C+  G                                    + E  + FYSM  +     
Sbjct: 183 CSHAGL-----------------------------------VSEGWKFFYSMKDEYGIEP 207

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
            V  Y  M+  LG  G+ EEA +    ME   I +D +++  +L AC   G    G +I 
Sbjct: 208 KVEHYGCMVNLLGRAGYLEEAYELVKNME---IDQDPVLWGTLLGACRLHGNIALGEQIA 264

Query: 432 QSM 434
           + +
Sbjct: 265 EYL 267



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/143 (34%), Positives = 69/143 (48%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D+A  LF+ + + +    N MI GY Q   P + L  +  M    +  +  T   VL A
Sbjct: 22  IDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRPNEVTVLAVLSA 81

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           CG    L  G  +H  +   G   +V V   LI MYSKCG +  AR VFE    KD+V+W
Sbjct: 82  CGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAW 141

Query: 182 NLVLRGFVECGEMGKAREVFDEM 204
           N ++ G+   G    A  +F EM
Sbjct: 142 NSMVVGYAMHGFSQDALRLFKEM 164


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 181/523 (34%), Positives = 291/523 (55%), Gaps = 13/523 (2%)

Query: 60  LNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVL 119
            +++ A   F      N  + N M+  Y Q  N  ++   ++ M+ +GL+ + YTYP +L
Sbjct: 363 FDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSIL 422

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           + C  L  L  G +IH +V+K GF  +V+V + LI MY+K G +  AR + +    +D+V
Sbjct: 423 RTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVV 482

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI- 238
           SW  ++ G+ +     +A ++F EM  +   S +I   G+       +  + L +   I 
Sbjct: 483 SWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNI---GFSSAISACAGIQALNQGQQIH 539

Query: 239 ---------KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
                    +DL   N+++  YA+ G    A   F ++  ++  SW+ +I G+AQ G+ +
Sbjct: 540 AQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCE 599

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           EAL +F +M   GV  ++ +   A+SA A    +  GK IH  M ++    +      LI
Sbjct: 600 EALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLI 659

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
            +Y KCGS+++A+R F+ M +KNV+S+N MI G   +G+G EA+  F +M+  G+  + +
Sbjct: 660 TLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHV 719

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            F+GVL ACSH GL  EG   F+SM +  G+ PK EHY C+VDLL RA  L  A   +E 
Sbjct: 720 TFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEE 779

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           MP++P+  +W TLL AC  H+N+ + E     L+EL+ +D   YVLLSN+YA +G W++ 
Sbjct: 780 MPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYR 839

Query: 530 LRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            R R+MM+ R +KKE GRS IE+  +I  F  G+     +E++
Sbjct: 840 DRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQI 882



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 129/465 (27%), Positives = 231/465 (49%), Gaps = 19/465 (4%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           QI A++  +   + P   + L+  L S N  ++D A+ +F +++  ++     MI G +Q
Sbjct: 133 QIHAKIIHHGFGSSPLVCNPLI-DLYSKNG-HVDLAKLVFERLFLKDSVSWVAMISGLSQ 190

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
           +    +A+  +  M +  ++   Y +  VL AC  +     G ++HG +VK G   + FV
Sbjct: 191 NGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFV 250

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP---- 205
            N L+ +YS+ G++  A  +F     +D +S+N ++ G  + G   +A ++F++M     
Sbjct: 251 CNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCM 310

Query: 206 QKDAISWSIMID-------GYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLV 258
           + D ++ + ++        GY+ K+      ++        DLI   S++D Y K  D+ 
Sbjct: 311 KPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMS----SDLIIEGSLLDLYVKCFDIE 366

Query: 259 AAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACA 318
            A + F      NV  W++M+  Y Q GN  E+ ++F +M  +G+ P+  +    +  C 
Sbjct: 367 TAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCT 426

Query: 319 QVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNV 378
            +GALDLG+ IH  + +S    ++ V + LIDMY K G LD AR I   + +++V+S+  
Sbjct: 427 SLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTA 486

Query: 379 MIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC 438
           MIAG   +    EALK F +ME +GI  D++ F   + AC+      +G +I  +     
Sbjct: 487 MIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQI-HAQSYIS 545

Query: 439 GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
           G    L   + LV L +R G  + A    E +  K N++ W  L+
Sbjct: 546 GYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNIS-WNALI 589



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 98/392 (25%), Positives = 185/392 (47%), Gaps = 12/392 (3%)

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           M+ +G+  +  TY ++ + C     L++  ++H  + K GF  +  + + LI +Y   G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFD----EMPQKDAISWSIMIDG 218
           +  A  +F+     ++  WN V+ G +      +   +F     E    D  +++ ++  
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 219 YRKKKGDIS-----SARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
               K          A+I+        L+  N +ID Y+K G +  A+ +F  +  ++  
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVC-NPLIDLYSKNGHVDLAKLVFERLFLKDSV 179

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
           SW  MI G +Q+G   EA+ LF +M    V P        +SAC ++    LG+ +H F+
Sbjct: 180 SWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFI 239

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
            +  ++ +  V  AL+ +Y + G+L  A +IF  M +++ ISYN +I+GL   GF + AL
Sbjct: 240 VKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRAL 299

Query: 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
           + F +M+ + +  D +    +L AC+  G   +G ++  S     G+   L     L+DL
Sbjct: 300 QLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQL-HSYVIKMGMSSDLIIEGSLLDL 358

Query: 454 LSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
             +  ++E A     +   + N+ LW  +L+A
Sbjct: 359 YVKCFDIETAHEYFLTTETE-NVVLWNVMLVA 389


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 212/648 (32%), Positives = 323/648 (49%), Gaps = 82/648 (12%)

Query: 17  SLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTS--PNTLNMDQAERLFNQIYQ 74
           ++L    +TT  L    Q   + L T  F  + L   L S   N +    A  + + + +
Sbjct: 17  TILNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPE 76

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           PN +  +T+I  +++      ALS +  M  +GL+ DN   P  +KAC  L  L    ++
Sbjct: 77  PNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQV 136

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           HG     GF  D FV + L+ MY KC  +  A  VF+     D+VSW+ ++  +   G +
Sbjct: 137 HGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCV 196

Query: 195 GKAREVFDEMP----QKDAISWS------------------------------------- 213
            +A+ +F EM     Q + ISW+                                     
Sbjct: 197 DEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSV 256

Query: 214 -------------IMIDGYRKKKG-----DISSARI--------------LFEHMPIKDL 241
                        I+I GY  K+G      +SSA I              +F+ M   D+
Sbjct: 257 LPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDV 316

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPER----NVFSWSIMIDGYAQHGNPKEALYLFRE 297
            S N+ I G ++ G + ++ +LF ++ ++    NV SW+ MI   +Q+G   EAL LFRE
Sbjct: 317 GSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFRE 376

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
           M   GV+P+ +++   + AC  + AL  GK  H F  R  I+ D+ V +ALIDMY KCG 
Sbjct: 377 MQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGR 436

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
           +  +R  F  +  KN++ +N +IAG  M+G  +EA++ F  M+  G   D + F  VL A
Sbjct: 437 IQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSA 496

Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
           CS SGL  EG   F SM    GIE ++EHY+C+V LLSRAG+LEQA  ++  MP+ P+  
Sbjct: 497 CSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDAC 556

Query: 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537
           +WG LL +CR H NV+L EV  E L EL+  + G Y+LLSNIYA  GMW    R+R MM+
Sbjct: 557 VWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMK 616

Query: 538 KRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
            + ++K  G S IE+   +   ++G   D    ++  +I++  K ++E
Sbjct: 617 NKGLRKNPGCSWIEVKNKVHMLLAG---DKSHPQMTQIIENLDKLSME 661


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 187/551 (33%), Positives = 292/551 (52%), Gaps = 70/551 (12%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D A++ F  I   +  ++N +I    Q  +  +A   Y  M+  G+ ++  TY  +L 
Sbjct: 279 DVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILN 338

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC     L  G  IH  + + G   DV + N LI MY++C                    
Sbjct: 339 ACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARC-------------------- 378

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY--RKKKGD------------I 226
                      G++ KARE+F  MP++D ISW+ +I GY  R+ +G+            +
Sbjct: 379 -----------GDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGV 427

Query: 227 SSARILFEH---------------MPIKDLIS---------WNSMIDGYAKIGDLVAAQQ 262
              R+ F H               M  +D++           N++++ Y + G L+ AQ 
Sbjct: 428 KPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQN 487

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F     R+V SW+ MI G+AQHG+ + A  LF+EM  + + PD I+    +S C    A
Sbjct: 488 VFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEA 547

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
           L+LGK IH  +  S + +D+ +  ALI+MY++CGSL +AR +F+S+  ++V+S+  MI G
Sbjct: 548 LELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGG 607

Query: 383 LGMNGFGEEALKCFAQMETEGI-PKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
               G   +A++ F QM+ EG  P D   F  +L AC+H+GL  EGY+IF SM+   G+ 
Sbjct: 608 CADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVL 667

Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEG 501
           P +EHY CLV LL RA   ++A  ++  MP  P+ A+W TLL ACR H N+ LAE     
Sbjct: 668 PTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANN 727

Query: 502 LVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
            ++L A +  +Y+LLSN+YA AG W+   +IR++M  R I+KE GRS IE+D  I EF++
Sbjct: 728 ALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIA 787

Query: 562 GEIFDVQSEEL 572
            +    ++ E+
Sbjct: 788 ADRSHPETAEI 798



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 135/497 (27%), Positives = 250/497 (50%), Gaps = 13/497 (2%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           +I AQ+    +  + F LS LL+++       +D A ++F ++ + +    N++I  Y Q
Sbjct: 48  RIHAQMVEAGVGPDIF-LSNLLINMYVKCRSVLD-AHQVFKEMPRRDVISWNSLISCYAQ 105

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
               +KA   +  M+  G + +  TY  +L AC     L  G +IH +++K G+  D  V
Sbjct: 106 QGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRV 165

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK-- 207
            N L+ MY KCG +  AR VF G   +D+VS+N +L  + +   + +   +F +M  +  
Sbjct: 166 QNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGI 225

Query: 208 --DAISWSIMIDGYRKKKGDISSARI---LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQ 262
             D +++  ++D +          RI     E     D+    +++    + GD+ +A+Q
Sbjct: 226 SPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQ 285

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
            F  + +R+V  ++ +I   AQHG+  EA   +  M   GV  +  + +  ++AC+   A
Sbjct: 286 AFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKA 345

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
           L+ GK IH  +     + D+ +  ALI MY +CG L +AR +FY+M K+++IS+N +IAG
Sbjct: 346 LEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAG 405

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
                   EA++ + QM++EG+    + FL +L AC++S    +G  I + + R  GI+ 
Sbjct: 406 YARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILR-SGIKS 464

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
                + L+++  R G L +A N+ E    + ++  W +++     H +   A  + + +
Sbjct: 465 NGHLANALMNMYRRCGSLMEAQNVFEGTQAR-DVISWNSMIAGHAQHGSYETAYKLFQEM 523

Query: 503 V--ELKADDCGLYVLLS 517
              EL+ D+     +LS
Sbjct: 524 QNEELEPDNITFASVLS 540



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/435 (28%), Positives = 225/435 (51%), Gaps = 13/435 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++ +A ++F  I   +   +NTM+  Y Q +  ++ L  +  M  +G+  D  TY  +L 
Sbjct: 178 DLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLD 237

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           A      L EG  IH   V+ G   D+ V   L+ M  +CG +  A+  F+G   +D+V 
Sbjct: 238 AFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVV 297

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAI-----SWSIMIDGYRKKKGDISSARILFEH 235
           +N ++    + G   +A E +  M + D +     ++  +++     K  + + +++  H
Sbjct: 298 YNALIAALAQHGHNVEAFEQYYRM-RSDGVALNRTTYLSILNACSTSKA-LEAGKLIHSH 355

Query: 236 MP----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           +       D+   N++I  YA+ GDL  A++LF  MP+R++ SW+ +I GYA+  +  EA
Sbjct: 356 ISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEA 415

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           + L+++M  +GV+P  ++ +  +SACA   A   GK IH  + RS I  +  +  AL++M
Sbjct: 416 MRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNM 475

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y +CGSL EA+ +F     ++VIS+N MIAG   +G  E A K F +M+ E +  D++ F
Sbjct: 476 YRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITF 535

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
             VL  C +      G +I   +    G++  +   + L+++  R G L+ A N+  S+ 
Sbjct: 536 ASVLSGCKNPEALELGKQIHGRITE-SGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQ 594

Query: 472 MKPNLALWGTLLLAC 486
            + ++  W  ++  C
Sbjct: 595 HR-DVMSWTAMIGGC 608



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/382 (30%), Positives = 197/382 (51%), Gaps = 11/382 (2%)

Query: 110 VDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSV 169
            D  TY  +L+ C     L E   IH ++V+ G   D+F+ N LI MY KC  +  A  V
Sbjct: 25  TDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQV 84

Query: 170 FEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ----KDAISW-SIMIDGYRK--- 221
           F+    +D++SWN ++  + + G   KA ++F+EM       + I++ SI+   Y     
Sbjct: 85  FKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAEL 144

Query: 222 KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           + G    ++I+      +D    NS++  Y K GDL  A+Q+F  +  R+V S++ M+  
Sbjct: 145 ENGKKIHSQIIKAGYQ-RDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGL 203

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
           YAQ    KE L LF +M  +G+ PD ++ +  + A      LD GK IH       +  D
Sbjct: 204 YAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSD 263

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
           + V TAL+ M ++CG +D A++ F  +  ++V+ YN +IA L  +G   EA + + +M +
Sbjct: 264 IRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRS 323

Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
           +G+  +   +L +L ACS S  A E  ++  S     G    ++  + L+ + +R G+L 
Sbjct: 324 DGVALNRTTYLSILNACSTSK-ALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLP 382

Query: 462 QALNIVESMPMKPNLALWGTLL 483
           +A  +  +MP K +L  W  ++
Sbjct: 383 KARELFYTMP-KRDLISWNAII 403



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 86/167 (51%), Gaps = 6/167 (3%)

Query: 304 RP---DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
           RP   D  + +  +  C +   L   K IH  M  + +  D+ +   LI+MY+KC S+ +
Sbjct: 21  RPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLD 80

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           A ++F  M +++VIS+N +I+     GF ++A + F +M+  G   + + ++ +L AC  
Sbjct: 81  AHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYS 140

Query: 421 SGLATEGYRIF-QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466
                 G +I  Q +K     +P+++  + L+ +  + G+L +A  +
Sbjct: 141 PAELENGKKIHSQIIKAGYQRDPRVQ--NSLLSMYGKCGDLPRARQV 185


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 180/569 (31%), Positives = 299/569 (52%), Gaps = 71/569 (12%)

Query: 67  RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
           +LF ++   +    NTMI  Y      ++AL  +  M   G+L D  T   ++  C  L 
Sbjct: 189 QLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLK 248

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG--------C------------- 165
            L  G  +H  +V         ++N L+ MYSKCG M         C             
Sbjct: 249 DLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTL 308

Query: 166 ------------ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM------PQK 207
                       AR +F+    + LVSW  ++ G+V+ G   ++ E+F +M      P +
Sbjct: 309 VSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDE 368

Query: 208 DA------------------------ISWSIMIDGY--------RKKKGDISSARILFEH 235
            A                        +++ +++DG+          K G +  A   FE 
Sbjct: 369 VALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQ 428

Query: 236 MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
           +P K   SWNSM+DG+ + G +  A+  FN++PE+++ SW+ M++ Y +H    E+  +F
Sbjct: 429 LPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIF 488

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
            +M    V+PD  +++  +S+CA+VGAL+ G W++V+++++ I +D ++ TALIDMY KC
Sbjct: 489 CKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKC 548

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
           G ++ A  IF  + +KNV  +  M+A   M G   EA+  + +ME  G+  D + F+ +L
Sbjct: 549 GCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALL 608

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
            ACSH GL  EGY+ F  ++    I P + HY C+VDLL R G LE+ +  +E MP++P+
Sbjct: 609 AACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPD 668

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535
           +++W +L+ ACR+H NV LAE   + L+E+   + G +VLLSNIYADAG W+   ++R  
Sbjct: 669 VSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTK 728

Query: 536 MRKRKIKKETGRSVIEIDGNIKEFVSGEI 564
           + +  + K+ G ++IE +G + EFV+  +
Sbjct: 729 LHETGVPKQPGFTMIEQNGVVHEFVASNL 757



 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 144/544 (26%), Positives = 258/544 (47%), Gaps = 79/544 (14%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           ++ LL+          I A L T +LI +P   SQ+L  L S N  N+D A ++ +  ++
Sbjct: 38  IIDLLKSCSNIREFSPIHAHLITANLIHDPEITSQVLAFLLSVN--NLDCAHQILSYSHE 95

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           P + + NT++    +   PQ+ L  Y +M  +G+L+D  T+ F++ AC     +  G+E+
Sbjct: 96  PESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEV 155

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           HG ++K GF  +  + N L+G+YSKCG +     +FE    +D++SWN ++  +V  G  
Sbjct: 156 HGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMY 215

Query: 195 GKAREVFDEM------PQK---------------------------DAISW------SIM 215
            +A ++FDEM      P +                           D   W      + +
Sbjct: 216 REALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCL 275

Query: 216 IDGYRKKKGDISSARILFEHMPIK--DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
           +D Y  K G +  A  L         D++ W +++ GY K   +  A+QLF++M ER++ 
Sbjct: 276 VDMY-SKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLV 334

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
           SW+ M+ GY Q G   E+L LF++M  + V PD ++++  +SAC  +   DLG+ +H F+
Sbjct: 335 SWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFI 394

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDE-------------------------------AR 362
               + +D  +  AL+D+Y KCG LDE                               AR
Sbjct: 395 VTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKAR 454

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
             F  + +K+++S+N M+     +    E+ + F +M++  +  D    + +L +C+  G
Sbjct: 455 DFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVG 514

Query: 423 LATEGYRIFQSM-KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
               G  +   + K   GI+  L   + L+D+  + G +E A  I   + ++ N+ +W  
Sbjct: 515 ALNHGIWVNVYIEKNEIGIDAMLG--TALIDMYGKCGCVEMAYEIFTQI-IEKNVFVWTA 571

Query: 482 LLLA 485
           ++ A
Sbjct: 572 MMAA 575



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 164/346 (47%), Gaps = 39/346 (11%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D+A +LF+++ + +     TM+ GY Q     ++L  +  M+ + ++ D      VL A
Sbjct: 318 IDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSA 377

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L     G  +H  +V  G L D F+ N L+ +Y+KCG +  A   FE    K   SW
Sbjct: 378 CVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASW 437

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK---------GDISSARIL 232
           N +L GF   G + KAR+ F+++P+KD +SW+ M++ Y K             + S+ + 
Sbjct: 438 NSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVK 497

Query: 233 FEHMPIKDLIS------------W-----------------NSMIDGYAKIGDLVAAQQL 263
            +   +  L+S            W                  ++ID Y K G +  A ++
Sbjct: 498 PDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEI 557

Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL 323
           F ++ E+NVF W+ M+  YA  G   EA+ L+ EM  +GV+PD ++ +  ++AC+  G +
Sbjct: 558 FTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLV 617

Query: 324 DLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           D G K+ +       I   +     ++D+  + G L+E  +    M
Sbjct: 618 DEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERM 663


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 181/516 (35%), Positives = 292/516 (56%), Gaps = 31/516 (6%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A  +F++I   N    N MIR Y  +   + AL  Y  M  +G + D YTYP VLKA   
Sbjct: 73  ARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSR 132

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
              L  G +IHG V+K+G   +++V NGLI MY KC  +  A+ V +    +D+VSWN +
Sbjct: 133 SDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSM 192

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
           +  + + G    A E+  EM            +    K  D + A +L     + +  S 
Sbjct: 193 VSVYAQNGRFNDALELCREM------------EALNLKPNDCTMASLL---PAVTNTTSD 237

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           N           ++  +++F ++ +++V SW++MI  Y  +  PKEA+ L+ +M   GV 
Sbjct: 238 N-----------VLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVE 286

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           PDV+S++  + A   + AL LG+ +H F +R ++  +++++ ALIDMY KCG L +AR +
Sbjct: 287 PDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAV 346

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F  M  ++V+S+  +I+  G  G G +A+  FA+M   G+  D + F+ VL ACSH+GL 
Sbjct: 347 FNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLL 406

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            +G R + ++   CGI PKLEH++C+VDLL RAG++++A   +  MP++P+  +WG LL 
Sbjct: 407 DDG-RYYFNLMAECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLS 465

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           ACR + N+ +  +  + L+ L  +  G YVLLSNIYA AG W     IR +M ++ IKK 
Sbjct: 466 ACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKL 525

Query: 545 TGRSVIEIDGNIKEFVSGEIFDVQS----EELELVI 576
            G S +E++  +  F++G+    QS    EEL++++
Sbjct: 526 PGISNVELNDGVHTFLAGDHSHPQSKKIYEELDVLV 561



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 148/340 (43%), Gaps = 73/340 (21%)

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK---KGDISSARILFEHMPIKD 240
           ++R +  CGE G AR +FDE+  K+ + +++MI  Y      K  +   + ++    + D
Sbjct: 60  LMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPD 119

Query: 241 LISW-----------------------------------NSMIDGYAKIGDLVAAQQLFN 265
           + ++                                   N +I  Y K   L  AQQ+ +
Sbjct: 120 MYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLD 179

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
           E+P R+V SW+ M+  YAQ+G   +AL L REM    ++P+  ++   + A         
Sbjct: 180 EIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAV-------- 231

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
                     +  T D +       +Y+K         +F  +TKK+VIS+NVMIA    
Sbjct: 232 ----------TNTTSDNV-------LYVK--------EMFLKLTKKSVISWNVMIAMYVN 266

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           N   +EA+  ++QME  G+  D +  + VL A       + G R+ +  +R   + P L 
Sbjct: 267 NSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERK-KLLPNLL 325

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
             + L+D+ ++ G L  A  +   M  + ++  W +++ A
Sbjct: 326 LENALIDMYAKCGCLRDARAVFNQMQFR-DVVSWTSIISA 364



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 98/192 (51%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           N +VS+   +      L++  ++   +L     T++ LL ++T+  + N+   + +F ++
Sbjct: 190 NSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSDNVLYVKEMFLKL 249

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
            + +    N MI  Y  +S P++A+  Y  M+  G+  D  +   VL A G L  L  G 
Sbjct: 250 TKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGR 309

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
            +H    +   L ++ + N LI MY+KCG +  AR+VF   + +D+VSW  ++  + +CG
Sbjct: 310 RVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCG 369

Query: 193 EMGKAREVFDEM 204
           +   A  VF EM
Sbjct: 370 QGRDAVAVFAEM 381



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 107/202 (52%), Gaps = 5/202 (2%)

Query: 225 DISSARILFEHMPIKDLISWNS-----MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMI 279
           DI++ + L   +     + WN      ++  YA  G+   A+ +F+E+ ++NV  +++MI
Sbjct: 33  DINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMI 92

Query: 280 DGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRIT 339
             Y  +   K+AL +++ M  QG  PD+ +    + A ++  +L +G  IH  + +  + 
Sbjct: 93  RSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLD 152

Query: 340 MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
           +++ V   LI MY KC SL EA+++   +  ++V+S+N M++    NG   +AL+   +M
Sbjct: 153 LNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREM 212

Query: 400 ETEGIPKDDLIFLGVLIACSHS 421
           E   +  +D     +L A +++
Sbjct: 213 EALNLKPNDCTMASLLPAVTNT 234



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 106/223 (47%), Gaps = 11/223 (4%)

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           V   L+ +Y  CG    AR IF  +T KNV+ +NVMI     N   ++AL  +  M T+G
Sbjct: 56  VGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQG 115

Query: 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
              D   +  VL A S S     G +I  ++ +  G++  L   + L+ +  +   L++A
Sbjct: 116 FVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLK-IGLDLNLYVGNGLIAMYGKCKSLKEA 174

Query: 464 LNIVESMPMKPNLALWGTLL-LACRNHQNVTLAEVVVE-GLVELKADDCGLYVLLSNIYA 521
             +++ +P + ++  W +++ +  +N +     E+  E   + LK +DC +  LL  +  
Sbjct: 175 QQVLDEIPCR-DVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTN 233

Query: 522 DAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEI 564
                ++ L +++M  K      T +SVI  +  I  +V+  +
Sbjct: 234 TTS--DNVLYVKEMFLKL-----TKKSVISWNVMIAMYVNNSM 269



 Score = 45.4 bits (106), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 66/312 (21%), Positives = 123/312 (39%), Gaps = 51/312 (16%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++ +A+++ ++I   +    N+M+  Y Q+     AL     M+   L  ++ T   +L 
Sbjct: 170 SLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLP 229

Query: 121 AC--------------------------GVLMGLVEGTEIHGEVVKM-------GFLCDV 147
           A                            V++ +     +  E V +       G   DV
Sbjct: 230 AVTNTTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDV 289

Query: 148 FVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG-----FVECGEMGKAREVFD 202
             +  ++  Y     +   R V + +E K L+  NL+L       + +CG +  AR VF+
Sbjct: 290 VSIVSVLPAYGDLSALSLGRRVHKFAERKKLLP-NLLLENALIDMYAKCGCLRDARAVFN 348

Query: 203 EMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK----DLISWNSMIDGYAKIGDLV 258
           +M  +D +SW+ +I  Y  K G    A  +F  M       D I++ S++   +  G L 
Sbjct: 349 QMQFRDVVSWTSIISAY-GKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLD 407

Query: 259 AAQQLFNEMPERNVFS----WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
             +  FN M E  +      ++ ++D   + G   EA    R+M    + PD       +
Sbjct: 408 DGRYYFNLMAECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQM---PLEPDERVWGPLL 464

Query: 315 SACAQVGALDLG 326
           SAC     +++G
Sbjct: 465 SACRVYSNMNIG 476


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 193/588 (32%), Positives = 310/588 (52%), Gaps = 83/588 (14%)

Query: 46   TLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKR 105
            T + +L  + S    + + A   +  + + N +  N++I    +  +  +AL  + ++++
Sbjct: 1949 TYNSILFGVPSGREDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRK 2008

Query: 106  KGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGC 165
             GL+    ++P  +K+C  L  LV G   H +    GF  D+FV + LI MYSKCG    
Sbjct: 2009 LGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCG---- 2064

Query: 166  ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGD 225
                    ++KD                   AR +FDE+P ++ +SW+ MI GY + +  
Sbjct: 2065 --------QLKD-------------------ARALFDEIPLRNVVSWTSMITGYVQNE-Q 2096

Query: 226  ISSARILFE-------------HMPIKDLI------------------------------ 242
              +A +LF+             ++P+  ++                              
Sbjct: 2097 ADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFD 2156

Query: 243  ----SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
                  N+++D YAK G  + ++++F+ M E++  SW+ MI  YAQ G   EAL +F  M
Sbjct: 2157 GSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGM 2216

Query: 299  LCQ-GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
            +   GVR + +++   + ACA  GAL  GK IH  + +  +  ++ V T++IDMY KCG 
Sbjct: 2217 VRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGR 2276

Query: 358  LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
            ++ A++ F  M +KNV S+  M+AG GM+G  +EAL  F +M   G+  + + F+ VL A
Sbjct: 2277 VEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAA 2336

Query: 418  CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
            CSH+GL  EG+  F +MK    IEP +EHY C+VDL  RAG L +A N+++ M MKP+  
Sbjct: 2337 CSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFV 2396

Query: 478  LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537
            +WG+LL ACR H+NV L E+  + L EL  D+CG YVLLSN+YADAG W    R+R +M+
Sbjct: 2397 VWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMK 2456

Query: 538  KRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
             R++ K  G S++E+ G +  F+ G   D +    E++ +   K T+E
Sbjct: 2457 NRQLVKPPGFSLVELKGRVHVFLVG---DKEHPHHEMIYKYLEKLTLE 2501



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/387 (31%), Positives = 201/387 (51%), Gaps = 43/387 (11%)

Query: 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK 176
           F+L+ C     L    +IH ++++ G   D  +   LI +YS  G +  A  +F   +  
Sbjct: 32  FLLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEM------------P------------------- 205
              +WNL++R     G   +A  ++  M            P                   
Sbjct: 89  CTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVH 148

Query: 206 --------QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDL 257
                     D    + +ID Y K  G    A  +FE M +++++SW ++I G    GDL
Sbjct: 149 GSLIKYGFSGDVFVQNNLIDFYFKC-GHTRFALKVFEKMRVRNVVSWTTVISGLISCGDL 207

Query: 258 VAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISAC 317
             A+++F+E+P +NV SW+ MI+GY ++  P+EAL LF+ M  + + P+  +++  I AC
Sbjct: 208 QEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKAC 267

Query: 318 AQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYN 377
            ++G L LG+ IH +  ++ I + + + TALIDMY KCGS+ +A  +F +M +K++ ++N
Sbjct: 268 TEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWN 327

Query: 378 VMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRH 437
            MI  LG++G G+EAL  F++ME   +  D + F+GVL AC H     EG   F  M +H
Sbjct: 328 SMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQH 387

Query: 438 CGIEPKLEHYSCLVDLLSRAGELEQAL 464
            GI P  EHY C+ +L +R+  L++A 
Sbjct: 388 YGIAPIPEHYECMTELYARSNNLDEAF 414



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 122/384 (31%), Positives = 191/384 (49%), Gaps = 43/384 (11%)

Query: 18  LLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNT 77
           LLQ  K   H+ QI A++  + L  +   L++ L+ L S +   +  A  LF QI  P T
Sbjct: 33  LLQNCKNFKHLRQIHAKIIRSGLSNDQL-LTRKLIHLYSTHG-RIAYAILLFYQIQNPCT 90

Query: 78  YMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGE 137
           +  N +IR  T +   ++AL  Y NM  +G+  D +T+PFV+KAC   + +  G  +HG 
Sbjct: 91  FTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGS 150

Query: 138 VVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKA 197
           ++K GF  DVFV N LI  Y KCGH   A  VFE   ++++VSW  V+ G + CG++ +A
Sbjct: 151 LIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEA 210

Query: 198 REVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM--------------------- 236
           R +FDE+P K+ +SW+ MI+GY + +     A  LF+ M                     
Sbjct: 211 RRIFDEIPSKNVVSWTAMINGYIRNQ-QPEEALELFKRMQAENIFPNEYTMVSLIKACTE 269

Query: 237 -------------PIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM 278
                         IK+ I        ++ID Y+K G +  A ++F  MP +++ +W+ M
Sbjct: 270 MGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSM 329

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338
           I     HG  +EAL LF EM    V+PD I+ +G + AC  +  +  G      M +   
Sbjct: 330 ITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYG 389

Query: 339 TMDMIVQ-TALIDMYMKCGSLDEA 361
              +      + ++Y +  +LDEA
Sbjct: 390 IAPIPEHYECMTELYARSNNLDEA 413



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 134/274 (48%), Gaps = 33/274 (12%)

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           +I  Y+  G +  A  LF ++     F+W+++I     +G  ++AL L++ M+CQG+  D
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG---------- 356
             +    I AC    ++DLGK +H  + +   + D+ VQ  LID Y KCG          
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184

Query: 357 ---------------------SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
                                 L EARRIF  +  KNV+S+  MI G   N   EEAL+ 
Sbjct: 185 KMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALEL 244

Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           F +M+ E I  ++   + ++ AC+  G+ T G  I     ++C IE  +   + L+D+ S
Sbjct: 245 FKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNC-IEIGVYLGTALIDMYS 303

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
           + G ++ A+ + E+MP K +L  W +++ +   H
Sbjct: 304 KCGSIKDAIEVFETMPRK-SLPTWNSMITSLGVH 336



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 10/206 (4%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           ++N L+        T   L++  ++   ++++    +S L+      +  ++ +A R+F+
Sbjct: 162 VQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLI------SCGDLQEARRIFD 215

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
           +I   N      MI GY ++  P++AL  +  M+ + +  + YT   ++KAC  +  L  
Sbjct: 216 EIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTL 275

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G  IH   +K      V++   LI MYSKCG +  A  VFE    K L +WN ++     
Sbjct: 276 GRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGV 335

Query: 191 CGEMGKAREVFDEMP----QKDAISW 212
            G   +A  +F EM     + DAI++
Sbjct: 336 HGLGQEALNLFSEMERVNVKPDAITF 361



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 11/218 (5%)

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
           + IH  + RS ++ D ++   LI +Y   G +  A  +FY +      ++N++I    +N
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
           G  E+AL  +  M  +GI  D   F  V+ AC++      G  +  S+ ++ G    +  
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKY-GFSGDVFV 162

Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL---LLACRNHQNVTLAEVVVEGLV 503
            + L+D   + G    AL + E M ++ N+  W T+   L++C + Q    A  + +   
Sbjct: 163 QNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISGLISCGDLQE---ARRIFD--- 215

Query: 504 ELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           E+ + +   +  + N Y      E AL + K M+   I
Sbjct: 216 EIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENI 253


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 160/420 (38%), Positives = 263/420 (62%), Gaps = 1/420 (0%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D    N ++  Y +  +M  A++ FE   IKD  SWN ++ GF +  +M KAR++F  MP
Sbjct: 37  DAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMP 96

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
            K+ ++W+ MI GY +  GD+ SA  LFE  P K +++W +MI GY K+G +  A++LF 
Sbjct: 97  TKNVVTWNAMISGYVEC-GDLDSALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFE 155

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
           +MPE+N+ +W+ MI GY ++   ++ + LFR M+  G++P+  ++  A+  C+++ AL L
Sbjct: 156 KMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQL 215

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
           G+ +H  + +S +  D    T+LI MY KCG L++  ++F  + +++V+++N MI+G   
Sbjct: 216 GRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQ 275

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           +G G++AL  F +M  +G+  D + F+ VL+AC+H+G    G + F SM +  G+  K +
Sbjct: 276 HGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPD 335

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
           HY+C+VDLL RAG+L +A++++E MP KP+ A++GTLL ACR H+N  +AE   + L+ L
Sbjct: 336 HYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNL 395

Query: 506 KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIF 565
                  YV L+N+YA    W+H  R+RK M+  K+ K  G S IE+     +F SG+ F
Sbjct: 396 DPASATGYVQLANVYAATKRWDHVARVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKF 455



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 160/370 (43%), Gaps = 78/370 (21%)

Query: 41  ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFY 100
           I EP  +S   M        NM++A+  F  +   +T   NTMI G+ Q+    KA   +
Sbjct: 33  IPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLF 92

Query: 101 VNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC 160
           + M  K                                       +V   N +I  Y +C
Sbjct: 93  LIMPTK---------------------------------------NVVTWNAMISGYVEC 113

Query: 161 GHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY- 219
           G +  A  +FE +  K +V+W  ++ G+++ G +G A  +F++MP+K+ ++W+ MI GY 
Sbjct: 114 GDLDSALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYI 173

Query: 220 ---RKKKG-----------------DISSARI----------------LFEHMPI-KDLI 242
              R + G                  +SSA +                L    P+  D  
Sbjct: 174 ENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTT 233

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
           +  S+I  Y K G L    +LF ++P R+V +W+ MI GYAQHG  K+AL LF EM+ +G
Sbjct: 234 AGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKG 293

Query: 303 VRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
           ++PD I+ +  + AC   G  DLG K+ H   K   +       T ++D+  + G L EA
Sbjct: 294 MKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEA 353

Query: 362 RRIFYSMTKK 371
             +   M  K
Sbjct: 354 VDLIEKMPFK 363



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 152/323 (47%), Gaps = 42/323 (13%)

Query: 204 MPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQL 263
           M  K  ++W+ ++ G  KK+G +  A+ LF  +P  D +S+N+M+  Y +  ++  AQ  
Sbjct: 1   MTLKTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAF 60

Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL 323
           F +MP ++  SW+ MI G+AQ+    +A  LF  M  +    +V++    IS   + G L
Sbjct: 61  FEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTK----NVVTWNAMISGYVECGDL 116

Query: 324 DLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383
           D    + +F K       ++  TA+I  YMK G +  A R+F  M +KN++++N MIAG 
Sbjct: 117 DSA--LKLFEKAP--FKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGY 172

Query: 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ----------- 432
             N   E+ +K F  M   GI  +       L+ CS       G ++ Q           
Sbjct: 173 IENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDT 232

Query: 433 -------SMKRHCGI----------EPKLE--HYSCLVDLLSRAGELEQALNIVESM--- 470
                  SM   CG+           P+ +   ++ ++   ++ GE ++AL + + M   
Sbjct: 233 TAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEK 292

Query: 471 PMKPNLALWGTLLLACRNHQNVT 493
            MKP+   +  +L+AC NH   T
Sbjct: 293 GMKPDWITFVAVLMAC-NHAGFT 314



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 126/293 (43%), Gaps = 19/293 (6%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           AERLF ++ + N    N MI GY ++   +  +  +  M   G+  ++ T    L  C  
Sbjct: 150 AERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSE 209

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L  L  G ++H  V K     D      LI MY KCG +     +F     +D+V+WN +
Sbjct: 210 LSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAM 269

Query: 185 LRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMPIKD 240
           + G+ + GE  KA  +FDEM +K    D I++  ++          +   + + H   KD
Sbjct: 270 ISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMAC--NHAGFTDLGVKYFHSMAKD 327

Query: 241 --LIS----WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEALY 293
             L++    +  M+D   + G LV A  L  +MP + +   +  ++     H N + A +
Sbjct: 328 YGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAEF 387

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
             +++L      D  S  G +       A    +W HV   R  +    +V+T
Sbjct: 388 ASQKLL----NLDPASATGYVQLANVYAATK--RWDHVARVRKSMKSCKVVKT 434


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 175/512 (34%), Positives = 281/512 (54%), Gaps = 43/512 (8%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +  AE+LFN++   N    NTMI GY Q+     A+  +  M  +               
Sbjct: 131 ISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPER--------------- 175

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
                                   +V   N ++ M ++CG +  AR +F+    +D++SW
Sbjct: 176 ------------------------NVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISW 211

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
             ++ G  + G + +AR +FD MP+++ +SW+ MI GY +    +  A  LFE MP +DL
Sbjct: 212 TAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNL-RLDEALDLFERMPERDL 270

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML-C 300
            SWN+MI G  + GDL  A++LFNEMP++NV SW+ MI G  Q G  +EAL +F  ML  
Sbjct: 271 PSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLST 330

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
            G +P+  + +  + AC+ +  L  G+ +H  + ++       V +ALI+MY KCG L  
Sbjct: 331 NGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGT 390

Query: 361 ARRIFYS--MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
           AR++F     ++++++S+N +IA    +G+G+EA+  F +M   G   DD+ ++G+L AC
Sbjct: 391 ARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSAC 450

Query: 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
           SH+GL  EG + F  + +   I  + +HY+CLVDL  RAG L++A   +E +  KP+  +
Sbjct: 451 SHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARV 510

Query: 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
           WG LL  C  H NV + +   + L+E++ ++ G Y+LLSNIYA  G W  A R+R  M+ 
Sbjct: 511 WGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKD 570

Query: 539 RKIKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570
           + +KK+ G S IE+   +  FV G+    QS+
Sbjct: 571 KGLKKQPGCSWIEVGNRVHVFVVGDKSHSQSK 602



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 128/418 (30%), Positives = 205/418 (49%), Gaps = 39/418 (9%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM- 204
           +V   N +I   SK G +  AR +F+     D+++W  V+ G+++CG + +AR +FD + 
Sbjct: 51  NVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVD 110

Query: 205 PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
            +K+ ++W+ M+ GY  +   IS A  LF  MP K+++SWN+MIDGYA+ G + +A  LF
Sbjct: 111 AKKNVVTWTAMVGGY-IRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLF 169

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
            +MPERNV SW+ ++   AQ G  +EA  LF  M       DVIS    I+  ++ G +D
Sbjct: 170 EKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRM----PERDVISWTAMIAGLSKNGRID 225

Query: 325 LGKWIHVFMKRSRIT---------------------------MDMIVQTALIDMYMKCGS 357
             + +   M    +                             D+     +I   ++ G 
Sbjct: 226 EARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGD 285

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM-ETEGIPKDDLIFLGVLI 416
           L  AR++F  M KKNVIS+  MI G    G  EEALK F++M  T G   +   F+ VL 
Sbjct: 286 LRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLG 345

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES-MPMKPN 475
           ACS+     EG ++ Q + +    +      S L+++ S+ GEL  A  + +  M  + +
Sbjct: 346 ACSNLAGLGEGQQVHQIISKTVYQDSTFV-VSALINMYSKCGELGTARKMFDDGMTSQRD 404

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLSNIYADAGMWEHALR 531
           L  W  ++ A  +H     A    + + +   K DD   YV L +  + AG+ E  L+
Sbjct: 405 LVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDV-TYVGLLSACSHAGLVEEGLK 461



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 78/147 (53%), Gaps = 3/147 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM-KRKGLLVDNYTYPFVL 119
           ++ +A +LFN++ + N     TMI G  Q    ++AL  +  M    G   +  T+  VL
Sbjct: 285 DLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVL 344

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG--SEIKD 177
            AC  L GL EG ++H  + K  +    FVV+ LI MYSKCG +G AR +F+   +  +D
Sbjct: 345 GACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRD 404

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEM 204
           LVSWN ++  +   G   +A   F EM
Sbjct: 405 LVSWNGIIAAYAHHGYGKEAINFFKEM 431


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 153/341 (44%), Positives = 229/341 (67%)

Query: 224 GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
           G ++ A +L       D  ++N++I  +A+ G +  A+ LF+EMPERN  SWS M++GY 
Sbjct: 142 GRLADAHLLLRTSAAVDASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYV 201

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
           Q G+ +EAL +F +M  QGVRPD   ++G ++ACAQ+GAL+ GKW+H ++K + I M + 
Sbjct: 202 QAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVF 261

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           + TAL+DMY KCG +     +F  M  KNV+++  MI GL M+G G ++L  F+QME+ G
Sbjct: 262 LGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSG 321

Query: 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
           +  DD+ F+G L AC+H+GL  +G  +F SM  + GI+PK+EHY C+VDLL+R G L +A
Sbjct: 322 VKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEA 381

Query: 464 LNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA 523
            ++VE MPMKP+  +WG L+  CR H+NV LAE V++  +EL+ D  G YVLL NIY+ +
Sbjct: 382 RDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVIKHWIELEPDKSGAYVLLGNIYSAS 441

Query: 524 GMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEI 564
           G    A  IR +MR++ ++K  G S +EI G I +F+ G++
Sbjct: 442 GRHASAREIRNLMREKGVEKTPGCSNVEIKGVIHQFIVGDL 482



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 170/366 (46%), Gaps = 49/366 (13%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           QA  + + + + +  +H+ +IR +  S  PQ AL  Y ++ R GL    +T P +LK+  
Sbjct: 40  QAALVTSGLLRRSAELHDALIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKSLA 99

Query: 124 VLMGLVEGTE-----IHGEVVKMGFLCDVFVVNGLIGMYSKC-GHMGCARSVFEGSEIKD 177
            L   V G       +H   V++G    + V N LI +++   G +  A  +   S   D
Sbjct: 100 -LSPAVPGARRLALAVHAHAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVD 158

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMP 237
             ++N ++      G +  AR +FDEMP+++A+SWS M++GY  + GD   A  +F  M 
Sbjct: 159 ASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGY-VQAGDGREALGVFSQMQ 217

Query: 238 IK-----DLI-----------------SW-----------------NSMIDGYAKIGDLV 258
            +     D +                  W                  +++D YAK G++ 
Sbjct: 218 AQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQ 277

Query: 259 AAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACA 318
              ++F  M ++NV +W+ MI G A HG   ++L LF +M   GV+PD I+ +GA+ AC 
Sbjct: 278 LGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACT 337

Query: 319 QVGALDLGKWIHVFMKRSRITMDMIVQTA-LIDMYMKCGSLDEARRIFYSMT-KKNVISY 376
             G +D G+ +   M  +      I     ++D+  + G L EAR +   M  K + + +
Sbjct: 338 HTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIW 397

Query: 377 NVMIAG 382
             ++AG
Sbjct: 398 GALMAG 403



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 111/242 (45%), Gaps = 9/242 (3%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A  LF+++ + N    + M+ GY Q+ + ++AL  +  M+ +G+  D+     VL AC  
Sbjct: 178 ARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQ 237

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L  L +G  +HG +        VF+   L+ MY+KCG +     VFEG + K++++W  +
Sbjct: 238 LGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTM 297

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR---KKKGDISSARILFEHM----P 237
           ++G    G    +  +F +M         I   G        G +   R LF  M     
Sbjct: 298 IKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYG 357

Query: 238 IKDLIS-WNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQHGNPKEALYLF 295
           IK  I  +  M+D  A+ G L  A+ +  +MP + +   W  ++ G   H N + A Y+ 
Sbjct: 358 IKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVI 417

Query: 296 RE 297
           + 
Sbjct: 418 KH 419


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 160/349 (45%), Positives = 228/349 (65%)

Query: 224 GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
           G +S A +L       D  ++N++I  YA+ G +  A+ LF+EMP RN  SWS M++GY 
Sbjct: 260 GRLSDALVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYV 319

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
           Q G+ +EAL LF  M   GVRPD   ++G ++ACAQ+G L+ GKW+H ++K + I + + 
Sbjct: 320 QAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVF 379

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           + TAL+DMY KCG +  A  +F  M +KNV+++  MI GL M+G G EAL+ F+QME  G
Sbjct: 380 LGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLG 439

Query: 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
           +  DD+ F+G L AC+H+GL  +G  +F SM R  GI+PK+EHY C+VDLL+R G L +A
Sbjct: 440 VKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEA 499

Query: 464 LNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA 523
             +VE MPMKP+  +WG L+  CR H+NV LAE VV+  +EL+ D  G YVLL NIYA +
Sbjct: 500 REMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAAS 559

Query: 524 GMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           G    A  IR +MR++ + K  G S +EI G I +F+ G++     EE+
Sbjct: 560 GRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEI 608



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 170/367 (46%), Gaps = 49/367 (13%)

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
           DQA  + +   + +  +HN +IR    S+ P  AL  Y ++ R G     +T P +LK+ 
Sbjct: 157 DQAALVTSGWLRRSADLHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSL 216

Query: 123 GVLMGLVEGTE-----IHGEVVKMGFLCDVFVVNGLIGMYSKC-GHMGCARSVFEGSEIK 176
             L   V G       +H   VK+G    + V N LI +++   G +  A  +   +   
Sbjct: 217 -ALSPAVPGARGLALAVHAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASV 275

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           D  ++N ++  +   G +  AR +FDEMP ++A+SWS M++GY  + GD   A  LF  M
Sbjct: 276 DASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGY-VQAGDGREALGLFARM 334

Query: 237 ------PIKDLI----------------SW-----------------NSMIDGYAKIGDL 257
                 P   ++                 W                  +++D YAK G++
Sbjct: 335 QADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEM 394

Query: 258 VAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISAC 317
             A ++F  M E+NV +W+ MI G A HG   EAL LF +M   GV+PD I+ +GA+ AC
Sbjct: 395 QLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCAC 454

Query: 318 AQVGALDLGKWIHVFMKRSRITMDMIVQTA-LIDMYMKCGSLDEARRIFYSMT-KKNVIS 375
              G +D G+ +   M R       I     ++D+  + G L+EAR +   M  K + + 
Sbjct: 455 THTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALI 514

Query: 376 YNVMIAG 382
           +  ++AG
Sbjct: 515 WGALMAG 521



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 115/245 (46%), Gaps = 9/245 (3%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            A  LF+++   N    + M+ GY Q+ + ++AL  +  M+  G+  D+     VL AC 
Sbjct: 295 DARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACA 354

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            L  L +G  +HG +        VF+   L+ MY+KCG M  A  VF+  + K++++W  
Sbjct: 355 QLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTT 414

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR---KKKGDISSARILFEHM---- 236
           +++G    G   +A E+F +M +       I   G        G +   R LF+ M    
Sbjct: 415 MIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKY 474

Query: 237 PIKDLIS-WNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQHGNPKEALYL 294
            IK  I  +  M+D  A+ G L  A+++  +MP + +   W  ++ G   H N + A Y+
Sbjct: 475 GIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYV 534

Query: 295 FREML 299
            +  +
Sbjct: 535 VKHWI 539



 Score = 45.4 bits (106), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 37/216 (17%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           M  A  +F  + + N     TMI+G        +AL  +  M+R G+  D+  +   L A
Sbjct: 394 MQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCA 453

Query: 122 CGVLMGLVE-GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           C    GLV+ G E+   +V+              G+  K  H GC         + DL++
Sbjct: 454 C-THTGLVDKGRELFDSMVRK------------YGIKPKIEHYGC---------MVDLLA 491

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQK-DAISWSIMIDGYRKKKGDISSARILFEH-MPI 238
            N         G + +ARE+ ++MP K DA+ W  ++ G R  K ++  A  + +H + +
Sbjct: 492 RN---------GLLNEAREMVEKMPMKPDALIWGALMAGCRFHK-NVELAEYVVKHWIEL 541

Query: 239 KDLISWNSMIDG--YAKIGDLVAAQQLFNEMPERNV 272
           +   S   ++ G  YA  G   +A+++ + M E+ V
Sbjct: 542 EPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGV 577


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 160/349 (45%), Positives = 228/349 (65%)

Query: 224 GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
           G +S A +L       D  ++N++I  YA+ G +  A+ LF+EMP RN  SWS M++GY 
Sbjct: 260 GRLSDALVLLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYV 319

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
           Q G+ +EAL LF  M   GVRPD   ++G ++ACAQ+G L+ GKW+H ++K + I + + 
Sbjct: 320 QAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVF 379

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           + TAL+DMY KCG +  A  +F  M +KNV+++  MI GL M+G G EAL+ F+QME  G
Sbjct: 380 LGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLG 439

Query: 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
           +  DD+ F+G L AC+H+GL  +G  +F SM R  GI+PK+EHY C+VDLL+R G L +A
Sbjct: 440 VKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEA 499

Query: 464 LNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA 523
             +VE MPMKP+  +WG L+  CR H+NV LAE VV+  +EL+ D  G YVLL NIYA +
Sbjct: 500 REMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAAS 559

Query: 524 GMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           G    A  IR +MR++ + K  G S +EI G I +F+ G++     EE+
Sbjct: 560 GRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIVGDLSHPFIEEI 608



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 170/367 (46%), Gaps = 49/367 (13%)

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
           DQA  + +   + +  +HN +IR    S+ P  AL  Y ++ R G     +T P +LK+ 
Sbjct: 157 DQAALVTSGWLRRSADLHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSL 216

Query: 123 GVLMGLVEGTE-----IHGEVVKMGFLCDVFVVNGLIGMYSKC-GHMGCARSVFEGSEIK 176
             L   V G       +H   VK+G    + V N LI +++   G +  A  +   +   
Sbjct: 217 -ALSPAVPGARGLALAVHAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASV 275

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           D  ++N ++  +   G +  AR +FDEMP ++A+SWS M++GY  + GD   A  LF  M
Sbjct: 276 DASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGY-VQAGDGREALGLFARM 334

Query: 237 ------PIKDLI----------------SW-----------------NSMIDGYAKIGDL 257
                 P   ++                 W                  +++D YAK G++
Sbjct: 335 QADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEM 394

Query: 258 VAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISAC 317
             A ++F  M E+NV +W+ MI G A HG   EAL LF +M   GV+PD I+ +GA+ AC
Sbjct: 395 QLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCAC 454

Query: 318 AQVGALDLGKWIHVFMKRSRITMDMIVQTA-LIDMYMKCGSLDEARRIFYSMT-KKNVIS 375
              G +D G+ +   M R       I     ++D+  + G L+EAR +   M  K + + 
Sbjct: 455 THTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALI 514

Query: 376 YNVMIAG 382
           +  ++AG
Sbjct: 515 WGALMAG 521



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 115/245 (46%), Gaps = 9/245 (3%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            A  LF+++   N    + M+ GY Q+ + ++AL  +  M+  G+  D+     VL AC 
Sbjct: 295 DARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACA 354

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            L  L +G  +HG +        VF+   L+ MY+KCG M  A  VF+  + K++++W  
Sbjct: 355 QLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTT 414

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR---KKKGDISSARILFEHM---- 236
           +++G    G   +A E+F +M +       I   G        G +   R LF+ M    
Sbjct: 415 MIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKY 474

Query: 237 PIKDLIS-WNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQHGNPKEALYL 294
            IK  I  +  M+D  A+ G L  A+++  +MP + +   W  ++ G   H N + A Y+
Sbjct: 475 GIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYV 534

Query: 295 FREML 299
            +  +
Sbjct: 535 VKHWI 539



 Score = 45.8 bits (107), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 37/216 (17%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           M  A  +F  + + N     TMI+G        +AL  +  M+R G+  D+  +   L A
Sbjct: 394 MQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCA 453

Query: 122 CGVLMGLVE-GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           C    GLV+ G E+   +V+              G+  K  H GC         + DL++
Sbjct: 454 C-THTGLVDKGRELFDSMVRK------------YGIKPKIEHYGC---------MVDLLA 491

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQK-DAISWSIMIDGYRKKKGDISSARILFEH-MPI 238
            N         G + +ARE+ ++MP K DA+ W  ++ G R  K ++  A  + +H + +
Sbjct: 492 RN---------GLLNEAREMVEKMPMKPDALIWGALMAGCRFHK-NVELAEYVVKHWIEL 541

Query: 239 KDLISWNSMIDG--YAKIGDLVAAQQLFNEMPERNV 272
           +   S   ++ G  YA  G   +A+++ + M E+ V
Sbjct: 542 EPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGV 577


>gi|357131531|ref|XP_003567390.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Brachypodium distachyon]
          Length = 531

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 161/442 (36%), Positives = 263/442 (59%), Gaps = 2/442 (0%)

Query: 111 DNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFL-CDVFVVNGLIGMYSKCGHMGCARSV 169
           D+++ PF L A   L     G  +H    ++  +   + V N L+ +Y+KC  +  A + 
Sbjct: 80  DHFSLPFALNAAASLGLFRFGASLHALAFRLALVPARLPVANALVDLYAKCDALPAAHAA 139

Query: 170 FEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSA 229
                  D VS+N +L        +  A  +F  MP +  +SW+ M+  Y    GD +SA
Sbjct: 140 LASIPAPDAVSFNSLLCAHARLASVPAAESLFTSMPSRTQVSWNAMVVVY-VNAGDFASA 198

Query: 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
           R++F+ MP +D  SW+ +I GY K G + +A++LF++MP +N+ +W+ MI+GYAQ G PK
Sbjct: 199 RLVFDEMPTRDSSSWSVLIVGYCKRGSMQSARELFDKMPGKNLVTWTAMINGYAQCGRPK 258

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           E++ LFRE+   G+ PD  +++G IS+ +Q+G+  L  W+  ++ R RI  +  V TAL+
Sbjct: 259 ESISLFRELEAVGIEPDAATMVGVISSASQIGSTALAGWVGNYVDRKRIERNEKVLTALV 318

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           DM+ KCG++++A   F  + + +   Y  +I+GL  +G    AL+ F +M  + +  D +
Sbjct: 319 DMHAKCGNVEQALNCFREIEQPDAYPYTALISGLATHGHSTLALQVFERMRAQAVRPDPI 378

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            F+GVL ACSH+GL   G   +++M +  G++ + +HY+C+VD+L RAG + +A ++V++
Sbjct: 379 TFVGVLTACSHAGLVDMGLDYWEAMVQDYGMDRRADHYACVVDMLGRAGRIVEAFDMVQT 438

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           MPM P+    G LL AC+ H NV +AE+V   L EL+  + G Y+LLSNIYA    WE A
Sbjct: 439 MPMGPHPGALGALLSACKTHDNVEIAEIVANKLFELEPRNTGNYILLSNIYAGKEQWEEA 498

Query: 530 LRIRKMMRKRKIKKETGRSVIE 551
            RIR +MR +   K+ G + +E
Sbjct: 499 ERIRSLMRTKLPFKQPGSTWVE 520



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 63/144 (43%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +M  A  LF+++   N      MI GY Q   P++++S +  ++  G+  D  T   V+ 
Sbjct: 225 SMQSARELFDKMPGKNLVTWTAMINGYAQCGRPKESISLFRELEAVGIEPDAATMVGVIS 284

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           +   +        +   V +     +  V+  L+ M++KCG++  A + F   E  D   
Sbjct: 285 SASQIGSTALAGWVGNYVDRKRIERNEKVLTALVDMHAKCGNVEQALNCFREIEQPDAYP 344

Query: 181 WNLVLRGFVECGEMGKAREVFDEM 204
           +  ++ G    G    A +VF+ M
Sbjct: 345 YTALISGLATHGHSTLALQVFERM 368


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 187/515 (36%), Positives = 301/515 (58%), Gaps = 17/515 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A  +F+++ + N      ++ GY Q  N + +L+    M   G+  + +T+   LKA
Sbjct: 55  VDLACSVFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKA 114

Query: 122 CGVLMGLVE-GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           CG L G+VE G +IHG  VK GF     V N  I MYSKCG +G A  VF     ++LVS
Sbjct: 115 CGAL-GVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVS 173

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR--------IL 232
           WN ++ G    G   K+  +F  M  +  +          K  G + + R        ++
Sbjct: 174 WNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLI 233

Query: 233 FEHMPI--KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
               PI  +++I+ ++++D YAK G L  AQ++F+ + ++N+ SWS +I G+AQ GN  E
Sbjct: 234 TRGFPISIRNIIA-SAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLE 292

Query: 291 ALYLFREML--CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTAL 348
           A+ LFR++      V   V+S+M  +   A +  ++ GK +H ++ +    +D+ V  ++
Sbjct: 293 AMDLFRQLRESVSNVDGFVLSIM--MGVFADLALVEQGKQMHCYILKVPSGLDISVANSI 350

Query: 349 IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD 408
           IDMY+KCG  +EA R+F  M  +NV+S+ VMI G G +G GE+A+  F +M+ +GI  D+
Sbjct: 351 IDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDE 410

Query: 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468
           + +L +L ACSHSGL  E    F  +  +  ++P +EHY+C+VD+L RAG+L++A N++E
Sbjct: 411 VAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAKNLIE 470

Query: 469 SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528
           +M +KPN  +W TLL ACR H N+ +   V E L  +  D+   YV++SNIYA+AG W+ 
Sbjct: 471 NMKLKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTDNPVNYVMMSNIYAEAGYWKE 530

Query: 529 ALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
             R+RK+++ + +KKE G+S +EI+  I  F  G+
Sbjct: 531 CERVRKLVKAKGLKKEAGQSWVEINKEIHFFYGGD 565



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 187/378 (49%), Gaps = 29/378 (7%)

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
           +G ++H   V MGF  D+ + N LI MY KC  +  A SVF+    +++VSW  ++ G++
Sbjct: 22  QGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYL 81

Query: 190 ECGEMGKAREVFDEM------PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243
           + G    +  +  EM      P +   S S+   G       +    +    M +K    
Sbjct: 82  QEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGAL----GVVENGMQIHGMCVKSGFE 137

Query: 244 W-----NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
           W     N+ ID Y+K G +  A+Q+FN+MP RN+ SW+ MI G+   GN +++L LF+ M
Sbjct: 138 WVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRM 197

Query: 299 LCQGVRPDVISVMGAISACAQVGALDLGKWIH--VFMKRSRITMDMIVQTALIDMYMKCG 356
             QG  PD  +    + AC  +GA+  G  IH  +  +   I++  I+ +A++D+Y KCG
Sbjct: 198 QGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCG 257

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
            L EA+++F  + +KN+IS++ +I G    G   EA+  F Q+  E +   D   L +++
Sbjct: 258 YLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLR-ESVSNVDGFVLSIMM 316

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEP-----KLEHYSCLVDLLSRAGELEQALNIVESMP 471
                G+  +   + Q  + HC I        +   + ++D+  + G  E+A  +   M 
Sbjct: 317 -----GVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQ 371

Query: 472 MKPNLALWGTLLLACRNH 489
           ++ N+  W  ++     H
Sbjct: 372 VR-NVVSWTVMITGYGKH 388



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 145/292 (49%), Gaps = 3/292 (1%)

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           DLI  N +ID Y K   +  A  +F+ M ERNV SW+ ++ GY Q GN K +L L  EM 
Sbjct: 38  DLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMG 97

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
             GV+P+  +   ++ AC  +G ++ G  IH    +S      +V  A IDMY KCG + 
Sbjct: 98  YSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIG 157

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
            A ++F  M  +N++S+N MIAG    G G ++L  F +M+ +G   D+  F   L AC 
Sbjct: 158 MAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACG 217

Query: 420 HSGLATEGYRIFQSM-KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
             G    G +I  S+  R   I  +    S +VDL ++ G L +A  + + +  K NL  
Sbjct: 218 ALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQK-NLIS 276

Query: 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYV-LLSNIYADAGMWEHA 529
           W  L+       N+  A  +   L E  ++  G  + ++  ++AD  + E  
Sbjct: 277 WSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQG 328



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 2/167 (1%)

Query: 317 CAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISY 376
           C++ G  D G  +H          D+I+   LIDMY KC  +D A  +F  M ++NV+S+
Sbjct: 14  CSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSW 73

Query: 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436
             ++ G    G  + +L    +M   G+  ++  F   L AC   G+   G +I   M  
Sbjct: 74  TALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQI-HGMCV 132

Query: 437 HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             G E      +  +D+ S+ G +  A  +   MP + NL  W  ++
Sbjct: 133 KSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFR-NLVSWNAMI 178


>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Glycine max]
          Length = 521

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 162/357 (45%), Positives = 235/357 (65%), Gaps = 1/357 (0%)

Query: 207 KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNE 266
            D +  + +ID Y  K G + SAR+ F+ M +++L+SWN+MIDGY + G    A Q+F+ 
Sbjct: 128 NDVMVGTALIDMY-AKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNGKFEDALQVFDG 186

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326
           +P +N  SW+ +I G+ +    +EAL  FREM   GV PD ++V+  I+ACA +G L LG
Sbjct: 187 LPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIAACANLGTLGLG 246

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
            W+H  +       ++ V  +LIDMY +CG +D AR++F  M ++ ++S+N +I G  +N
Sbjct: 247 LWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVN 306

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
           G  +EAL  F  M+ EG   D + + G L+ACSH+GL  EG RIF+ MKR   I P++EH
Sbjct: 307 GLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEH 366

Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506
           Y CLVDL SRAG LE+ALN++++MPMKPN  + G+LL ACR   N+ LAE V+  L+EL 
Sbjct: 367 YGCLVDLYSRAGRLEEALNVLKNMPMKPNEVILGSLLAACRTQGNIGLAENVMNYLIELD 426

Query: 507 ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           +     YVLLSNIYA  G W+ A ++R+ M++R I+K+ G S IEID +I +FVSG+
Sbjct: 427 SGGDSNYVLLSNIYAAVGKWDGANKVRRRMKERGIQKKPGFSSIEIDSSIHKFVSGD 483



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 110/369 (29%), Positives = 183/369 (49%), Gaps = 47/369 (12%)

Query: 82  TMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG---VLMGLVEGTEIHGEV 138
           T I  Y +S +  KA S +V M+   +  ++ T+  +L AC        +  GT IH  V
Sbjct: 61  TSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTAIHAHV 120

Query: 139 VKMGF-LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKA 197
            K+G  + DV V   LI MY+KCG +  AR  F+   +++LVSWN ++ G++  G+   A
Sbjct: 121 RKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNGKFEDA 180

Query: 198 REVFDEMPQKDAISWSIMIDGYRKKK---------GDISSARILFEHMPIKDLIS----- 243
            +VFD +P K+AISW+ +I G+ KK           ++  + +  +++ +  +I+     
Sbjct: 181 LQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIAACANL 240

Query: 244 -------W-----------------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMI 279
                  W                 NS+ID Y++ G +  A+Q+F+ MP+R + SW+ +I
Sbjct: 241 GTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVSWNSII 300

Query: 280 DGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRIT 339
            G+A +G   EAL  F  M  +G +PD +S  GA+ AC+  G +  G  I   MKR R  
Sbjct: 301 VGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRI 360

Query: 340 MDMIVQTA-LIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGL---GMNGFGEEALK 394
           +  I     L+D+Y + G L+EA  +  +M  K N +    ++A     G  G  E  + 
Sbjct: 361 LPRIEHYGCLVDLYSRAGRLEEALNVLKNMPMKPNEVILGSLLAACRTQGNIGLAENVMN 420

Query: 395 CFAQMETEG 403
              ++++ G
Sbjct: 421 YLIELDSGG 429



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 120/280 (42%), Gaps = 68/280 (24%)

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
           ++SW + I  Y K G LV A   F +M E                               
Sbjct: 56  IVSWTTSIADYCKSGHLVKAASKFVQMRE------------------------------- 84

Query: 301 QGVRPDVISVMGAISACAQV---GALDLGKWIHVFMKRSRITM-DMIVQTALIDMYMKCG 356
             + P+ I+ +  +SACA      ++  G  IH  +++  + + D++V TALIDMY KCG
Sbjct: 85  AAIEPNHITFITLLSACAHYPSRSSISFGTAIHAHVRKLGLDINDVMVGTALIDMYAKCG 144

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNG----------------------------- 387
            ++ AR  F  M  +N++S+N MI G   NG                             
Sbjct: 145 RVESARLAFDQMGVRNLVSWNTMIDGYMRNGKFEDALQVFDGLPVKNAISWTALIGGFVK 204

Query: 388 --FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
             + EEAL+CF +M+  G+  D +  + V+ AC++ G    G  + + +         ++
Sbjct: 205 KDYHEEALECFREMQLSGVAPDYVTVIAVIAACANLGTLGLGLWVHRLVMTQ-DFRNNVK 263

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
             + L+D+ SR G ++ A  + + MP +  L  W ++++ 
Sbjct: 264 VSNSLIDMYSRCGCIDLARQVFDRMPQR-TLVSWNSIIVG 302



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 10/216 (4%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
            + A ++F+ +   N      +I G+ +    ++AL  +  M+  G+  D  T   V+ A
Sbjct: 177 FEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIAA 236

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G  +H  V+   F  +V V N LI MYS+CG +  AR VF+    + LVSW
Sbjct: 237 CANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVSW 296

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMP 237
           N ++ GF   G   +A   F+ M ++    D +S++  +       G I     +FEHM 
Sbjct: 297 NSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMAC-SHAGLIGEGLRIFEHMK 355

Query: 238 -----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
                +  +  +  ++D Y++ G L  A  +   MP
Sbjct: 356 RVRRILPRIEHYGCLVDLYSRAGRLEEALNVLKNMP 391


>gi|302142752|emb|CBI19955.3| unnamed protein product [Vitis vinifera]
          Length = 488

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 176/502 (35%), Positives = 287/502 (57%), Gaps = 73/502 (14%)

Query: 106 KGLLVD--NYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCG-H 162
           K L+V+  ++T+ F+LK       L +G  IHGE++K+GF   VFV N L+G Y+ C  +
Sbjct: 2   KALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSLLGFYANCSEN 61

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK 222
           +G A  VFE    +D++SWN ++  ++  GE+  A  + D+MP+++ ++W+ ++ G   K
Sbjct: 62  LGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGL-SK 120

Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
            G++  A  +FE MP+++ +SWNSMI GY +IGD+ AAQ +F +MPE+ V SW+ MI GY
Sbjct: 121 AGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGY 180

Query: 283 AQHGNPK-------------------------------EALYLFREMLCQG-VRPDVISV 310
           A +G+ K                               +AL +F  ML  G  RPD  ++
Sbjct: 181 ATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTL 240

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
           +  +SACA +G+L+ GKWI+ ++K++++ + + +  ALIDM+ KCG ++ A+ +F+ M+K
Sbjct: 241 ISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSK 300

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           + +I++  M++GL +NG   EA+  F +M  EG   DD+IF+ VL AC+H GL  EG R+
Sbjct: 301 RCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRV 360

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
           F  M +  GI+P++EHY C+VDLL RAG+LE+A  I++  P  P+               
Sbjct: 361 FDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEA-KIMDQEPSNPS--------------- 404

Query: 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
                                   L+SN+ A  G WE  L  R  MR+++++K  G S I
Sbjct: 405 ---------------------YLTLVSNLSASFGRWEDVLSFRVAMRQQRMEKVPGCSSI 443

Query: 551 EIDGNIKEFVSGEIFDVQSEEL 572
           ++   + EF++ +   VQ +E+
Sbjct: 444 QVGNRVHEFLAKDTRHVQRKEI 465



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 1/145 (0%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKG-LLVDNYTYPFVL 119
           ++  AE +FN +   N    N MI GY  +    +AL  + +M   G    D  T   +L
Sbjct: 185 DLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISIL 244

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
            AC  L  L  G  I+  + K      + + N LI M++KCG +  A+ VF     + ++
Sbjct: 245 SACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCII 304

Query: 180 SWNLVLRGFVECGEMGKAREVFDEM 204
           +W  ++ G    G+  +A  +FD+M
Sbjct: 305 TWTTMVSGLAVNGKCREAINLFDKM 329


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 198/545 (36%), Positives = 289/545 (53%), Gaps = 93/545 (17%)

Query: 16  VSLLQIS----KTTTHILQILAQLTTNDLITEPFTLSQL---LMSLTSP-NTLNMDQAE- 66
           +SLL +S    + +TH+L            T PF L QL   L+   SP ++L + +   
Sbjct: 5   LSLLHVSPLHHRPSTHLLHNF---------TSPFELKQLHAHLLKTNSPLSSLPLSRVAS 55

Query: 67  -----------RLFNQIYQPNTYMH-NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYT 114
                      +L  Q+   +   H NT +R + +  +P  A+S +  ++   +  D+YT
Sbjct: 56  VCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYT 115

Query: 115 YPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174
             FVLKAC  L+ +  G  +HG V K+G   ++F+                         
Sbjct: 116 CSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFL------------------------- 150

Query: 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFE 234
                  N+++  +  CGE+G AR+V                                F+
Sbjct: 151 ------QNMIVHLYALCGEIGVARKV--------------------------------FD 172

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
            MP +D+I+WN MI    K+GD   A +LF EMPERNV SW+ MI GYAQ G  KEA+ L
Sbjct: 173 KMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDL 232

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           F EM   G+ P+ ++V+  + ACA +G L LG+ IH F  RS    ++ V   LIDMY+K
Sbjct: 233 FLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVK 292

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG L++A RIF +M ++ V+S++ MIAGL  +G  E+AL  F +M   G+  + + F+G+
Sbjct: 293 CGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGI 352

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L ACSH G+  +G + F SM R  GI P++EHY C+VDL SRAG L++A   + +MP+ P
Sbjct: 353 LHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAP 412

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           N  +WG LL  C+ H+NV LAE     L +L   + G YV+LSNIYA+AG WE   R+RK
Sbjct: 413 NGVVWGALLGGCKVHKNVKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRK 472

Query: 535 MMRKR 539
           +MR R
Sbjct: 473 LMRDR 477


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 179/525 (34%), Positives = 303/525 (57%), Gaps = 7/525 (1%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ A  LF+++ + +      MI GY +     ++L  +  M+ +G++ D      V+ A
Sbjct: 81  IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFA 140

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  + +   I   + +  F  DV +   +I MY+KCG +  AR +F+  E K+++SW
Sbjct: 141 CAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISW 200

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI--LFEHMPIK 239
           + ++  +   G+  KA ++F  M     +   I +        D+ + ++  L  H+  K
Sbjct: 201 SAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYK 260

Query: 240 -----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
                D     +++D Y K  ++  A+ LF++MPER++ +W++MI GYA+ GN  E+L L
Sbjct: 261 FGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVL 320

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           F +M  +GV PD ++++  + ACA++GA+   + I  +++R +  +D+I+ TA+IDM+ K
Sbjct: 321 FDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAK 380

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG ++ AR IF  M +KNVIS++ MIA  G +G G +AL  F  M   GI  + +  + +
Sbjct: 381 CGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSL 440

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L ACSH+GL  EG R F  M     +   ++HY+C+VDLL RAG L++AL ++ESM ++ 
Sbjct: 441 LYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEK 500

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           +  LWG  L ACR H++V LAE     L+EL+  + G Y+LLSNIYA+AG WE   + R 
Sbjct: 501 DEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRD 560

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSF 579
           +M +R++KK  G + IE+D    +F  G+    +S+E+  +++S 
Sbjct: 561 LMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSL 605



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 133/417 (31%), Positives = 223/417 (53%), Gaps = 15/417 (3%)

Query: 83  MIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMG 142
           M+ G+ +  +       +  + R G   DNYT PFV++AC  L  L  G  IH  V K G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 143 FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFD 202
              D FV   L+ MY KC  +  AR +F+  + +DLV+W +++ G+ ECG+  ++  +F+
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 203 EM------PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK----DLISWNSMIDGYA 252
           +M      P K A+   +       K G +  ARI+ +++  K    D+I   +MID YA
Sbjct: 121 KMREEGVVPDKVAMVTVVFACA---KLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYA 177

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
           K G + +A+++F+ M E+NV SWS MI  Y  HG  ++AL LFR ML  G+ PD I++  
Sbjct: 178 KCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLAS 237

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
            + AC+ +  L +G+ IH  + +  + +D  V  AL+DMY KC  +++AR +F  M +++
Sbjct: 238 LLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERD 297

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
           ++++ VMI G    G   E+L  F +M  EG+  D +  + V+ AC+  G   +   I  
Sbjct: 298 LVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDD 357

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
            ++R    +  +   + ++D+ ++ G +E A  I + M  K N+  W  ++ A   H
Sbjct: 358 YIQRK-KFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEK-NVISWSAMIAAYGYH 412


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 163/365 (44%), Positives = 247/365 (67%), Gaps = 8/365 (2%)

Query: 215 MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
           ++D Y  + GD++SA+ LF+ MP + L+S+ +M+  YAK G L  A+ LF  M  ++V  
Sbjct: 158 LVDAY-ARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVC 216

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQG-------VRPDVISVMGAISACAQVGALDLGK 327
           W++MIDGYAQHG P EAL  FR+M+          VRP+ I+V+  +S+C QVGAL+ GK
Sbjct: 217 WNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGK 276

Query: 328 WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
           W+H +++ + I +++ V TAL+DMY KCGSL++AR++F  M  K+V+++N MI G G++G
Sbjct: 277 WVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHG 336

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
           F +EAL+ F +M   G+   D+ F+ VL AC+H+GL ++G+ +F SMK   G+EPK+EHY
Sbjct: 337 FSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHY 396

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
            C+V+LL RAG +++A ++V SM ++P+  LWGTLL ACR H NV+L E + E LV    
Sbjct: 397 GCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGL 456

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDV 567
              G YVLLSN+YA A  W    ++R MM+   ++KE G S IE+   + EFV+G+    
Sbjct: 457 ASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRHP 516

Query: 568 QSEEL 572
           +S+++
Sbjct: 517 RSKDI 521



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 120/453 (26%), Positives = 191/453 (42%), Gaps = 86/453 (18%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           K+ L  L+  SK+T H+LQI A L    L   P    +L  S  S   L+   +  LF++
Sbjct: 23  KDNLALLIDNSKSTHHLLQIHAALLRRGLHHHPILNFKLQRSYASLGHLH--HSVTLFHR 80

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
              PN ++   +I  +        ALS+Y  M    +  + +T   +LKAC     L   
Sbjct: 81  TPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPA 136

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
             +H   +K G    ++V  GL+  Y++ G +  A+ +F+    + LVS+  +L  + + 
Sbjct: 137 RAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKH 196

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILF------------------ 233
           G + +AR +F+ M  KD + W++MIDGY  + G  + A + F                  
Sbjct: 197 GMLPEARVLFEGMGMKDVVCWNVMIDGY-AQHGCPNEALVFFRKMMMMMGGNGNGKVRPN 255

Query: 234 ---------------------------EHMPIK-DLISWNSMIDGYAKIGDLVAAQQLFN 265
                                      E+  IK ++    +++D Y K G L  A+++F+
Sbjct: 256 EITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFD 315

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
            M  ++V +W+ MI GY  HG   EAL LF EM C GV+P  I+ +  ++ACA  G +  
Sbjct: 316 VMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSK 375

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
           G  +   MK                               Y M  K V  Y  M+  LG 
Sbjct: 376 GWEVFDSMKDG-----------------------------YGMEPK-VEHYGCMVNLLGR 405

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
            G  +EA      ME E    D +++  +L AC
Sbjct: 406 AGRMQEAYDLVRSMEVE---PDPVLWGTLLWAC 435



 Score = 46.2 bits (108), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 8/175 (4%)

Query: 329 IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
           IH  + R  +    I+   L   Y   G L  +  +F+     NV  +  +I        
Sbjct: 42  IHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDL 101

Query: 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACS-HSGLATEGYRIFQSMKRHCGIEPKLEHY 447
              AL  ++QM T  I  +      +L AC+ H   A   + I   +  H  +       
Sbjct: 102 FHHALSYYSQMLTHPIQPNAFTLSSLLKACTLHPARAVHSHAIKFGLSSHLYVS------ 155

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
           + LVD  +R G++  A  + ++MP + +L  +  +L     H  +  A V+ EG+
Sbjct: 156 TGLVDAYARGGDVASAQKLFDAMPER-SLVSYTAMLTCYAKHGMLPEARVLFEGM 209


>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 581

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 179/474 (37%), Positives = 267/474 (56%), Gaps = 12/474 (2%)

Query: 110 VDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSV 169
           +DNY+    L     +  +V G ++H   VK+G   D FV+N LI MYS C +   ARSV
Sbjct: 91  IDNYSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSV 150

Query: 170 FEGSE--IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ-----KDAISWSIMIDGYRK- 221
            + +     D VSWN ++ G++  G   KA + F +M +      D    + ++   R  
Sbjct: 151 LDSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTC 210

Query: 222 --KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMI 279
             K G +  A ++     I   +  +S+I  YAK G +  A+++F+ MP+RN   W+ MI
Sbjct: 211 MMKVGKLCHALLVTNGFEINCYMG-SSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMI 269

Query: 280 DGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRIT 339
            GY Q G  KEA+ LFR+M   GV+ D  ++   +S+C Q+GALDLG+++H +     + 
Sbjct: 270 SGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLGRYVHAYCDIHGLG 329

Query: 340 MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
            D+ V+ +LIDMY KCG + +A  IF  M K++  S+ V+I G   NG   EAL  FAQM
Sbjct: 330 KDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWTVIIMGFAANGLSGEALDLFAQM 389

Query: 400 ETE-GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458
           E E G+  +++ FLGVL +CSH GL  +GYR F  M    GI P++EHY C+VDLL RA 
Sbjct: 390 EEEGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIEHYGCMVDLLGRAK 449

Query: 459 ELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSN 518
            L +A   ++ MP+ P+  +W +LL ACR    V LAE V E +  L+ + CG  VLLS 
Sbjct: 450 LLAEAEQFIKEMPIAPDAVMWRSLLFACRTCGEVGLAEYVAERIQVLEPNKCGGDVLLST 509

Query: 519 IYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           +YA    W  A ++R  +   +  K+ G S IE+DG + EF +G+    ++E +
Sbjct: 510 VYATTSRWVDANKVRTGIYSGRKTKQPGCSFIEVDGCVHEFFAGDESHFETEAI 563



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 160/311 (51%), Gaps = 19/311 (6%)

Query: 27  HILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLN--MDQAERLFNQIYQPNTYMHNTMI 84
           H L +   L+++  +    TL  +  S + P+T    +D A +        +T   NT+I
Sbjct: 116 HALSVKLGLSSDTFVLN--TLINMYSSCSYPSTARSVLDSAPK-----GASDTVSWNTII 168

Query: 85  RGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFL 144
            GY  +  P KAL  +  M +  +++D+ T    L AC     +  G   H  +V  GF 
Sbjct: 169 AGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHALLVTNGFE 228

Query: 145 CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM 204
            + ++ + LI MY+KCG +  AR +F+G   ++ V W  ++ G+ + G+  +A ++F +M
Sbjct: 229 INCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDM 288

Query: 205 P----QKDAISWSIMIDGYRKKKGDISSARILFEHMPI----KDLISWNSMIDGYAKIGD 256
                + D  + S ++     + G +   R +  +  I    KD+   NS+ID Y+K GD
Sbjct: 289 QIAGVKVDDATISTVVSSC-GQMGALDLGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGD 347

Query: 257 LVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ-GVRPDVISVMGAIS 315
           +  A  +F  M +R+ FSW+++I G+A +G   EAL LF +M  + GV P+ I+ +G ++
Sbjct: 348 IKKAYDIFCGMVKRDNFSWTVIIMGFAANGLSGEALDLFAQMEEEGGVMPNEITFLGVLT 407

Query: 316 ACAQVGALDLG 326
           +C+  G ++ G
Sbjct: 408 SCSHGGLVEQG 418



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 100/225 (44%), Gaps = 25/225 (11%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            ++ A R+F+ +   N     +MI GYTQ    ++A+  + +M+  G+ VD+ T   V+ 
Sbjct: 246 QVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVS 305

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           +CG +  L  G  +H      G   D+ V N LI MYSKCG +  A  +F G   +D  S
Sbjct: 306 SCGQMGALDLGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFS 365

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAI---------------SWSIMIDGYR--KKK 223
           W +++ GF   G  G+A ++F +M ++  +                  ++  GYR   + 
Sbjct: 366 WTVIIMGFAANGLSGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRM 425

Query: 224 GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
             I       EH        +  M+D   +   L  A+Q   EMP
Sbjct: 426 SSIYGIAPRIEH--------YGCMVDLLGRAKLLAEAEQFIKEMP 462


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 198/569 (34%), Positives = 312/569 (54%), Gaps = 10/569 (1%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           L +LL  SK    I +I A +    +     + ++L+ S       +++ A ++F++  Q
Sbjct: 10  LKTLLITSKDEPTIAKIHALMILTGIFGHGNSNAKLIQSYARLG--HIESARQVFDKSPQ 67

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
                 N MI  Y++     +ALS Y  M  +G+  D+ TY  VLKAC   + L  G E 
Sbjct: 68  CGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEET 127

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
             + V  G+  DVFV   ++ +Y+KCG M  A  VF+    +DLV W  ++ G  + G+ 
Sbjct: 128 WRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQA 187

Query: 195 GKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI-------LFEHMPIKDLISWNSM 247
            +A +++ +M +K      +++ G  +    +  +++       +     I D+I   S+
Sbjct: 188 REAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSL 247

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           +D YAK G L  A  +F  M  +NV SWS +I G+AQ+G    AL L  +M   G +PD 
Sbjct: 248 VDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDS 307

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           +S++  + AC+QVG L LGK +H ++ R R+  D +  TA+IDMY KCGSL  AR +F  
Sbjct: 308 VSLVSVLLACSQVGFLKLGKSVHGYIVR-RLHFDCVSSTAVIDMYSKCGSLSFARTVFDQ 366

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           ++ ++ IS+N +IA  G++G GEEAL  F QM    +  D   F  +L A SHSGL  +G
Sbjct: 367 ISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKG 426

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
              F  M     I+P  +HY+C+VDLLSRAG +E+A  ++ESM  +P +A+W  LL  C 
Sbjct: 427 RYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCL 486

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
           NH    + E+  + ++EL  DD G+Y L+SN +A A  W+    +RK+M+K  +KK  G 
Sbjct: 487 NHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGY 546

Query: 548 SVIEIDGNIKEFVSGEIFDVQSEELELVI 576
           SV+E++G +  F+  +    Q EE+  V+
Sbjct: 547 SVMEVNGKLHAFLMEDKSHHQYEEIMQVL 575


>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Glycine max]
          Length = 549

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 183/537 (34%), Positives = 292/537 (54%), Gaps = 75/537 (13%)

Query: 35  LTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQ 94
           L  +D++   F  +   + L+S        A  +F   ++P+ + +N +I   + SSNP 
Sbjct: 58  LDQDDILLARFIYTSASLGLSS-------YAYSVFISNHRPSIFFYNNVIWALS-SSNPT 109

Query: 95  KALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLI 154
           +A+S +  ++  G+  D+Y++PFVLKA   L  +  G +IH + +  G      VV  L+
Sbjct: 110 RAISLFNAIRLLGMPPDSYSFPFVLKAVVCLSAVHVGKQIHCQAIVSGLDSHPSVVTSLV 169

Query: 155 GMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSI 214
            MYS                                C  +  AR++FD            
Sbjct: 170 QMYS-------------------------------SCAHLSSARKLFDGAT--------- 189

Query: 215 MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE--RNV 272
                             F+H P+     WN+M+ GYAK+G++  A+ LF  MPE  R+V
Sbjct: 190 ------------------FKHAPL-----WNAMLAGYAKVGNMSNARNLFECMPEKDRDV 226

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
            SW+ +I GY Q  +P EA+ LFR ML Q V+PD I+++  +SACA +GAL LG+WIH +
Sbjct: 227 VSWTTLISGYTQTHSPNEAITLFRIMLLQNVQPDEIAILAVLSACADLGALQLGEWIHNY 286

Query: 333 MKR--SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
           +++  +++   + +  +LIDMY K G + +AR++F +M  K +I++  +I+GL ++GFG+
Sbjct: 287 IEKHNNKLRKTVPLCNSLIDMYAKSGDISKARQLFQNMKHKTIITWTTVISGLALHGFGK 346

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
           EAL  F+ ME   +  +++  + VL ACSH GL   G  IF SM+   GIEPK+EHY C+
Sbjct: 347 EALDVFSCMEKARVKPNEVTLIAVLSACSHVGLVELGRNIFTSMRSKYGIEPKIEHYGCM 406

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           +DLL RAG L++A+ +V  MP + N A+WG+LL A   + +  LA   +  L  L+  +C
Sbjct: 407 IDLLGRAGYLQEAMELVRVMPSEANAAVWGSLLSASNRYGDAALAAEALRHLSVLEPHNC 466

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDV 567
           G Y LLSN YA  G W+ A  +RK+MR    +K  G S +E++  + EF++G+  ++
Sbjct: 467 GNYSLLSNTYAALGWWKEAAMVRKVMRDTCAEKVPGVSFVELNNRVYEFIAGDKLNI 523


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 186/534 (34%), Positives = 302/534 (56%), Gaps = 12/534 (2%)

Query: 61   NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            ++ +A  +F Q+ + +    NTMI G T S   + ++  +V++ R  LL D +T   VL+
Sbjct: 985  SVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLR 1044

Query: 121  ACGVLMG-LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
            AC  L G     T+IH   +K G + D FV   LI +YSK G M  A  +F   +  DL 
Sbjct: 1045 ACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLA 1104

Query: 180  SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR-------IL 232
            SWN ++ G++  G+  KA  ++  M +    S  I +    K  G +   +       ++
Sbjct: 1105 SWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVV 1164

Query: 233  FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
             +     DL   + ++D Y K G++ +A+++F+E+P  +  +W+ MI G  ++G  + AL
Sbjct: 1165 VKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHAL 1224

Query: 293  YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            + + +M    V+PD  +    + AC+ + AL+ G+ IH  + +     D  V T+L+DMY
Sbjct: 1225 FTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMY 1284

Query: 353  MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
             KCG++++AR +F     + + S+N MI GL  +G  +EAL+ F  M++ G+  D + F+
Sbjct: 1285 AKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFI 1344

Query: 413  GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            GVL ACSHSGL +E Y  F SM+++ GIEP++EHYSCLVD LSRAG +E+A  ++ SMP 
Sbjct: 1345 GVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPF 1404

Query: 473  KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
            + + +++ TLL ACR   +    + V E L+ L+  D   YVLLSN+YA A  WE+    
Sbjct: 1405 EASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASA 1464

Query: 533  RKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586
            R MMRK  +KK+ G S +++   +  FV+G+    +S E   VI + V+  ++R
Sbjct: 1465 RNMMRKVNVKKDPGFSWVDLKNKVHLFVAGD----RSHEETDVIYNKVEYIMKR 1514



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 113/478 (23%), Positives = 206/478 (43%), Gaps = 45/478 (9%)

Query: 7    AKFSLKNPLVSLLQISKTTTHILQILAQ-LTTNDLITEPFTLSQLLMSLTSPNTL----- 60
            A  S  NPL     +  +      IL Q +  +DL       +++L S   P+       
Sbjct: 638  AATSTANPLTPRAHLIHSLPQCFSILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNL 697

Query: 61   --------NMDQAERLFNQIYQPNTYM--HNTMIRGYT-QSSNPQKALSFYVNMKRKGLL 109
                    ++  A +LF+     N  +   N ++      +         +  ++R  + 
Sbjct: 698  ITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVS 757

Query: 110  VDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSV 169
               +T   V K C +         +HG  VK+G   DVFV   L+ +Y+K G +  AR +
Sbjct: 758  TTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVL 817

Query: 170  FEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSA 229
            F+G  ++D+V WN++++ +V+     +A  +F E  +           G+R    D  + 
Sbjct: 818  FDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRT----------GFRP---DDVTL 864

Query: 230  RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
            R L   +  K  I        Y       A +    +    +V  W+  +  + Q G   
Sbjct: 865  RTLSRVVKCKKNILELKQFKAY-------ATKLFMYDDDGSDVIVWNKALSRFLQRGEAW 917

Query: 290  EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
            EA+  F +M+   V  D ++ +  ++  A +  L+LGK IH  + RS +   + V   LI
Sbjct: 918  EAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLI 977

Query: 350  DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
            +MY+K GS+  AR +F  M + ++IS+N MI+G  ++G  E ++  F  +  + +  D  
Sbjct: 978  NMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQF 1037

Query: 410  IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK--LEHY--SCLVDLLSRAGELEQA 463
                VL ACS    + EG     +    C ++    L+ +  + L+D+ S+ G++E+A
Sbjct: 1038 TVASVLRACS----SLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEA 1091



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 93/416 (22%), Positives = 171/416 (41%), Gaps = 53/416 (12%)

Query: 84   IRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF-VLKACGVLMGLVEGTEIHGEVVKMG 142
            +R  T ++NP         +  +  L+ +    F +L+       L  G   H  ++  G
Sbjct: 636  LRAATSTANP---------LTPRAHLIHSLPQCFSILRQAIAASDLSLGKRAHARILTSG 686

Query: 143  FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI--KDLVSWNLVLRGFVECGEMGKAREV 200
               D FV N LI MY+KCG +  AR +F+ +    +DLV+WN +L          K+ + 
Sbjct: 687  HHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALA--AHADKSHDG 744

Query: 201  FD--EMPQKDAISWSIMIDGYRKKKGDISSARILFEHM---PIKDLISWNSMIDG----- 250
            F    + ++  +S +        K   +S++    E +    +K  + W+  + G     
Sbjct: 745  FHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNI 804

Query: 251  YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
            YAK G +  A+ LF+ M  R+V  W++M+  Y       EA+ LF E    G RPD +++
Sbjct: 805  YAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTL 864

Query: 311  MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
                                        T+  +V+     + +K       +   Y    
Sbjct: 865  R---------------------------TLSRVVKCKKNILELKQFKAYATKLFMYDDDG 897

Query: 371  KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
             +VI +N  ++     G   EA+ CF  M    +  D L F+ +L   +       G +I
Sbjct: 898  SDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQI 957

Query: 431  FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
               + R  G++  +   +CL+++  +AG + +A ++   M  + +L  W T++  C
Sbjct: 958  HGIVMR-SGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMN-EVDLISWNTMISGC 1011


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 179/531 (33%), Positives = 301/531 (56%), Gaps = 21/531 (3%)

Query: 46  TLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKR 105
           +  QL + L S NTL   + +      ++ N +  N +I G+  +  P++   FY  M+ 
Sbjct: 78  SFVQLEIELPS-NTLKAGEND----PTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRN 132

Query: 106 KGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGC 165
           +G++ D +T+P  +KAC   + ++E  +IHG + K G   DVF+ + L+  Y K G M  
Sbjct: 133 EGVMPDKFTFPCAIKAC---LDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEH 189

Query: 166 ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK--- 222
           A+  FE   I+D+V WN ++ G+ + G+     E F  M  +  +     + G       
Sbjct: 190 AQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAV 249

Query: 223 KGDISSARILFE---HMPIKDLIS-WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM 278
            GD+++ RI+      M     ++  NS+ID Y K   +  A ++F  M E+++FSW+ +
Sbjct: 250 MGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSI 309

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM----- 333
           +  + Q G+    L L   ML  G++PD+++V   + AC+ + AL  G+ IH +M     
Sbjct: 310 VSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGL 369

Query: 334 -KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
            K  +   D++++ A+IDMY KCGS+ +A  +F  M+ K+V S+N+MI G GM+G+G EA
Sbjct: 370 GKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEA 429

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
           L+ F++M    +  D++ F+GVL ACSH+G  ++G      MK    + P +EHY+C++D
Sbjct: 430 LEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVID 489

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
           +L RAG+L++A  +  +MP++ N  +W  LL ACR H++  LAEV  + + EL+ + CG 
Sbjct: 490 MLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGS 549

Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           YVL+SN+Y   G +E  L +R  MR++ ++K  G S IE+   +  FVS +
Sbjct: 550 YVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSAD 600


>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 169/471 (35%), Positives = 271/471 (57%), Gaps = 40/471 (8%)

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCG--HMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           +IHG+++K G + +   V+ L+  Y++    ++   R VF+     + V WN +LR +  
Sbjct: 28  QIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIWNTMLRAYSN 87

Query: 191 CGEMGKAREVFDEM-------------------------PQKDAISWSIMIDGYRKK--- 222
             +   A  ++ +M                          +   I   I+  G+  +   
Sbjct: 88  SNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEVYA 147

Query: 223 ----------KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
                      G+I SA +LF  +P +D++SWN MIDGY K G+L  A ++F  MPE+NV
Sbjct: 148 TNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNV 207

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
            SW+ MI G+ + G  KEAL L ++ML  G++PD I++  ++SACA +GAL+ GKWIH +
Sbjct: 208 ISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTY 267

Query: 333 MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
           ++++ I +D ++   L DMY+KCG +++A  +F  + KK V ++  +I GL ++G G EA
Sbjct: 268 IEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREA 327

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
           L  F QM+  GI  + + F  +L ACSH+GL  EG  +F+SM     I+P +EHY C+VD
Sbjct: 328 LDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEHYGCMVD 387

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
           L+ RAG L++A   +ESMP+KPN A+WG LL AC+ H++  L + + + L+EL  D  G 
Sbjct: 388 LMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQLHKHFELGKEIGKILIELDPDHSGR 447

Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           Y+ L++IYA AG W   +R+R  ++ R +    G S I ++G + EF +G+
Sbjct: 448 YIHLASIYAAAGEWNQVVRVRSQIKHRGLLNHPGCSSITLNGVVHEFFAGD 498



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 189/395 (47%), Gaps = 41/395 (10%)

Query: 17  SLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPN 76
           +LL+       ++QI  QL     I    T+S LL+S      +N+     +F+ I  PN
Sbjct: 15  ALLERCSNMKELMQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPN 74

Query: 77  TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHG 136
           T + NTM+R Y+ S++P+ AL  Y  M    +  ++YT+PF+LKAC  L    E  +IH 
Sbjct: 75  TVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHA 134

Query: 137 EVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGK 196
            ++K GF  +V+  N L+ +Y+  G++  A  +F     +D+VSWN+++ G+++ G +  
Sbjct: 135 HIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDM 194

Query: 197 AREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK----------------- 239
           A ++F  MP+K+ ISW+ MI G+  + G    A  L + M +                  
Sbjct: 195 AYKIFQAMPEKNVISWTTMIVGF-VRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACA 253

Query: 240 ----------------------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSI 277
                                 D +    + D Y K G++  A  +F+++ ++ V +W+ 
Sbjct: 254 GLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTA 313

Query: 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR-S 336
           +I G A HG  +EAL  F +M   G+ P+ I+    ++AC+  G  + GK +   M    
Sbjct: 314 IIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVY 373

Query: 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
            I   M     ++D+  + G L EAR    SM  K
Sbjct: 374 NIKPSMEHYGCMVDLMGRAGLLKEAREFIESMPVK 408


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 181/501 (36%), Positives = 296/501 (59%), Gaps = 14/501 (2%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A ++F+ + + N     +M+RGY Q    ++A   +  M R+ ++  ++T         +
Sbjct: 102 ARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVV--SWTV--------M 151

Query: 125 LMGLVEGTEIHG--EVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
           + GL++ + I    ++  M    DV VV  +IG Y + G +  AR +F+  +++++ +W 
Sbjct: 152 IGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWT 211

Query: 183 LVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLI 242
            ++ G+ + G +  AR++F+ MP+++ +SW+ M+ GY  + G +  A  LFE MP+K ++
Sbjct: 212 TMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGY-TQSGRMKEAFELFEAMPVKWIV 270

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
           + N MI  +   G++  A+ +F  M ER+  +W+ MI  + + G   EAL LF  M  +G
Sbjct: 271 ACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREG 330

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           V  +  S++  +S CA + +LD G+ +H  + RS    D+ V + LI MY+KCG L  A+
Sbjct: 331 VALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAK 390

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
            IF     K+V+ +N MI G   +G GEEAL  F  M + G+  D++ F+GVL ACS+SG
Sbjct: 391 GIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSG 450

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
              EG+ IF++MK    +EP +EHY+C+VDLL RAG +++A+ +VE MPM+P+  +WG L
Sbjct: 451 KVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGAL 510

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
           L ACRNH  + LAEV VE L +L+  + G YVLLS++YA  G W     +RK + +R IK
Sbjct: 511 LGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKINRRVIK 570

Query: 543 KETGRSVIEIDGNIKEFVSGE 563
              G S IE++  +  F  G+
Sbjct: 571 F-PGCSWIEVEKKVHMFTGGD 590



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 138/263 (52%), Gaps = 15/263 (5%)

Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDE--MPQKDAISWSIMIDGYRKKKGDISSARI 231
           + + L S    +  +   G++  AR+VFD   +PQ+   SW+ M+  Y +       A +
Sbjct: 15  QARSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKP-RDALL 73

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           LF+ MP ++ +S+N MI GY K G +  A+++F+ MPERNV SW+ M+ GY Q G  +EA
Sbjct: 74  LFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEA 133

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
             LF EM     R +V+S    I    +   +D  K +   +       D++V T +I  
Sbjct: 134 EKLFWEM----PRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEK----DVVVVTNMIGG 185

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y + G LDEAR +F  M  +NV ++  M++G   NG  + A K F  M      ++++ +
Sbjct: 186 YCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPE----RNEVSW 241

Query: 412 LGVLIACSHSGLATEGYRIFQSM 434
             +L+  + SG   E + +F++M
Sbjct: 242 TAMLMGYTQSGRMKEAFELFEAM 264



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 171/369 (46%), Gaps = 40/369 (10%)

Query: 151 NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAI 210
           N ++  Y +      A  +F+    ++ VS+N ++ G+V+ G +  AR+VFD MP+++ +
Sbjct: 56  NAMVSAYFESHKPRDALLLFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVV 115

Query: 211 SWSIMIDGYRK------------------------------KKGDISSARILFEHMPIKD 240
           SW+ M+ GY +                              K+  I  A+ LF+ +P KD
Sbjct: 116 SWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKD 175

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
           ++   +MI GY ++G L  A++LF+EM  RNVF+W+ M+ GYA++G    A  LF  M  
Sbjct: 176 VVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPE 235

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
           +        +MG   +     A +L + + V  K      +MI+Q  L       G +  
Sbjct: 236 RNEVSWTAMLMGYTQSGRMKEAFELFEAMPV--KWIVACNEMILQFGL------AGEMHR 287

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           AR +F  M +++  ++N MI      G   EAL  FA+M+ EG+  +    + VL  C+ 
Sbjct: 288 ARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCAS 347

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
                 G ++   + R    +  L   S L+ +  + G+L +A  I      K ++ +W 
Sbjct: 348 LASLDHGRQVHARLVR-SEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFK-DVVMWN 405

Query: 481 TLLLACRNH 489
           +++     H
Sbjct: 406 SMITGYSQH 414



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 108/234 (46%), Gaps = 11/234 (4%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           M +A  +F  + + +    N MI+ + +     +AL  +  M+R+G+ ++  +   VL  
Sbjct: 285 MHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSV 344

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G ++H  +V+  F  D++V + LI MY KCG +  A+ +F     KD+V W
Sbjct: 345 CASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMW 404

Query: 182 NLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARILFEHMP 237
           N ++ G+ + G   +A  VF +M     Q D +++ I +       G +     +FE M 
Sbjct: 405 NSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTF-IGVLSACSYSGKVKEGFEIFEAMK 463

Query: 238 IKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQH 285
               +      +  M+D   + G +  A +L  +MP E +   W  ++     H
Sbjct: 464 CTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRNH 517


>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
          Length = 494

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 161/363 (44%), Positives = 235/363 (64%), Gaps = 1/363 (0%)

Query: 216 IDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
           I G   K+G    AR++F+ M  K+ ++WN+MIDGY + G +  A +LF+EMPER++ SW
Sbjct: 109 ILGMYSKRGRFGKARLVFDFMEDKNSVTWNTMIDGYMRSGQVNNAVKLFDEMPERDLISW 168

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
           + MI+G+ + G  +EAL  FREM   GV+PD ++++ A++AC  +GAL  G W+H ++  
Sbjct: 169 TAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAACTHLGALSFGLWVHRYVMN 228

Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
                ++ V  +LID+Y +CG ++ AR +F  M K+ V+S+N +I G   NG   E+L  
Sbjct: 229 QDFKNNIRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVY 288

Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           F +M+ EG   D + F G L ACSH GL  EG R FQ+MKR   I P++EHY CLVDL S
Sbjct: 289 FRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYS 348

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT-LAEVVVEGLVELKADDCGLYV 514
           RAG LE ALN+V+SMPMKPN  + G+LL ACRNH N T LAE +V+ L +L       YV
Sbjct: 349 RAGRLEDALNVVQSMPMKPNEVVIGSLLAACRNHGNNTVLAERLVKHLSDLNVKSHSNYV 408

Query: 515 LLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELEL 574
           +LSN+YA  G+WE A ++R+ M+   +KK+ G S +EID     F++G+   V++  +  
Sbjct: 409 ILSNMYAADGIWEGASKMRRKMKGLGLKKQPGFSSVEIDDCTHVFMAGDSAHVETAYIRE 468

Query: 575 VIQ 577
           V++
Sbjct: 469 VLE 471



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 178/353 (50%), Gaps = 46/353 (13%)

Query: 64  QAERLF--NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           Q +R+   NQ     T    + I   +++    +A   + +M+  G+  ++ T+  +L  
Sbjct: 15  QIQRILKLNQSTSETTVSWTSRITLLSRNGRLAEAAKEFSSMRLAGVEPNHITFIALLSG 74

Query: 122 CGVLMGLVE--GTEIHGEVVKMGF-LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDL 178
           CG +    E  G  +HG   K+G     V V   ++GMYSK G  G AR VF+  E K+ 
Sbjct: 75  CGDVSSGSEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRFGKARLVFDFMEDKNS 134

Query: 179 VSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI 238
           V+WN ++ G++  G++  A ++FDEMP++D ISW+ MI+G+  KKG    A   F  M I
Sbjct: 135 VTWNTMIDGYMRSGQVNNAVKLFDEMPERDLISWTAMINGF-VKKGFHEEALAWFREMQI 193

Query: 239 K----DLIS------------------W-----------------NSMIDGYAKIGDLVA 259
                D ++                  W                 NS+ID Y + G +  
Sbjct: 194 SGVKPDYVAIIAALAACTHLGALSFGLWVHRYVMNQDFKNNIRVSNSLIDLYCRCGCVEF 253

Query: 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
           A+++F++M +R V SW+ +I G+A +GN  E+L  FR+M  +G +PD ++  GA++AC+ 
Sbjct: 254 AREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSH 313

Query: 320 VGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
           VG ++ G ++     +  RI+  +     L+D+Y + G L++A  +  SM  K
Sbjct: 314 VGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEDALNVVQSMPMK 366



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 102/216 (47%), Gaps = 10/216 (4%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ A +LF+++ + +      MI G+ +    ++AL+++  M+  G+  D       L A
Sbjct: 150 VNNAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAA 209

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G  +H  V+   F  ++ V N LI +Y +CG +  AR VF+  E + +VSW
Sbjct: 210 CTHLGALSFGLWVHRYVMNQDFKNNIRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSW 269

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMP 237
           N V+ GF   G   ++   F +M ++    DA++++  +       G +      F+ M 
Sbjct: 270 NSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTAC-SHVGLVEEGLRYFQTMK 328

Query: 238 IKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP 268
               IS     +  ++D Y++ G L  A  +   MP
Sbjct: 329 RDHRISPRIEHYGCLVDLYSRAGRLEDALNVVQSMP 364


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 186/550 (33%), Positives = 307/550 (55%), Gaps = 54/550 (9%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
           V  ++  K+   + Q+ A L       +    +++L    + +  ++  A  +F+Q+ + 
Sbjct: 19  VPQIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPER 78

Query: 76  NTYMHNTMIRGYTQSSNPQ-KALSFYVNMKRKGLLVDN-YTYPFVLKACGVLMGLVEGTE 133
           N +  NT+IR   ++ +    AL  +  M  +  +  N +T+P VLKAC V+  L EG +
Sbjct: 79  NCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQ 138

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           +HG ++K G + D FVV  L+ MY                               V CG 
Sbjct: 139 VHGLLLKFGLVDDEFVVTNLLRMY-------------------------------VMCGS 167

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILF--EHMPIKDLISWNSMIDGY 251
           M  A  +F                 YR  +G +   R L   E     +++  N M+DGY
Sbjct: 168 MEDANVLF-----------------YRNVEG-VDDVRNLVRDERGREFNVVLCNVMVDGY 209

Query: 252 AKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISV 310
           A++G+L AA++LF+ M +R+V SW++MI GYAQ+G  KEA+ +F  M+  G V P+ +++
Sbjct: 210 ARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTL 269

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
           +  + A +++G L+LGKW+H++ ++++I +D ++ +AL+DMY KCGS+++A ++F  + +
Sbjct: 270 VSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQ 329

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
            NVI++N +I GL M+G   +     ++ME  GI   D+ ++ +L ACSH+GL  EG   
Sbjct: 330 NNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSF 389

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
           F  M    G++PK+EHY C+VDLL RAG LE+A  ++ +MPMKP+  +W  LL A + H+
Sbjct: 390 FNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHK 449

Query: 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           N+ +     E L+++   D G YV LSN+YA +G W+    +R MM+   I+K+ G S I
Sbjct: 450 NIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSWI 509

Query: 551 EIDGNIKEFV 560
           EIDG I EF+
Sbjct: 510 EIDGVIHEFL 519


>gi|28558786|gb|AAO45757.1| selenium binding protein-like protein [Cucumis melo subsp. melo]
          Length = 565

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 189/554 (34%), Positives = 299/554 (53%), Gaps = 15/554 (2%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           ++S L+  KT   + QI + +    ++      S+L+    +    +++ A  +F+Q  Q
Sbjct: 8   ILSFLEKCKTMKELKQIHSLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQTDQ 67

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
              Y+ N+MI+GY    +   AL  Y  M+RKG   D++T+PFVLK C  +  LV G  +
Sbjct: 68  LTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDLLVYGQSV 127

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           H  +VK GF  DV+  + L+ MY  CG +     VFE     ++V+W  ++ GFV   + 
Sbjct: 128 HNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQP 187

Query: 195 GKAREVFDEMPQKDAISWSIMIDGYRK---KKGDISSARIL-----------FEHMPIKD 240
            +A  +F +M  +      I +        +  DI + +++           F      +
Sbjct: 188 KEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVRYRLRQLGLDPFHTNSRFN 247

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
           +I   +++D YAK G LV A+ LF++MP+RN+  W+ MI  ++Q+G   EAL LF +M  
Sbjct: 248 VILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAFSQYGRGAEALRLFVDMEL 307

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
            G  P+  + +  I AC  +     G+ +H  + ++     + + TAL+DMY K G  D 
Sbjct: 308 AGFVPNKATFLSVIRACTHLRFRSTGQSLHARVLKANFHEFVAIGTALMDMYAKSGDADT 367

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKDDLIFLGVLIACS 419
           A +IF  + KK+V+++  MI+GL + G G+EAL  F +ME E  +  D + ++ VL ACS
Sbjct: 368 ALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITYIAVLWACS 427

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           H GL  EG + F SM    GIEP +EHY C++DLLSRAG  E+A  ++  MP +PN  + 
Sbjct: 428 HLGLVEEGQKHFTSMMEVYGIEPTMEHYGCMIDLLSRAGHSEEAEELLVKMPTQPNATIL 487

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
            ++L  C  + NV LA  V   +VELK    G+YVLLSNI+A A  WE     R +++ +
Sbjct: 488 SSILNGCEMYGNVGLANRVKSHIVELKNSSSGVYVLLSNIHAKACNWEEMKLARDILKHK 547

Query: 540 KIKKETGRSVIEID 553
           KI K  G S +E++
Sbjct: 548 KIGKTLGNSFVEMN 561


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 161/363 (44%), Positives = 239/363 (65%), Gaps = 1/363 (0%)

Query: 215 MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
           ++D Y  + GD+  AR LF+ MP + L+S  +M+  Y+K+G+L  A+ LF  M ER+V  
Sbjct: 182 LVDVY-ARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVC 240

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W++MI GYAQ G P E+L LFR ML     P+ ++V+  +SAC Q+GAL+ G+WIH +++
Sbjct: 241 WNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIE 300

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
              I +++ V TALIDMY KCGSL++AR +F  +  K+V+++N MI G  M+GF + AL+
Sbjct: 301 NKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQ 360

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
            F +M   G    D+ F+G+L AC H GL  EG   F+ M+   GIEPK+EHY C+V+LL
Sbjct: 361 LFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLL 420

Query: 455 SRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYV 514
            RAG LE+A  +V++M +  +  LWGTLL  CR H N+ L E + + LV+ K  + G YV
Sbjct: 421 GRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYV 480

Query: 515 LLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELEL 574
           LLSN+YA  G WE   ++R +M++  I+KE G S IE+D  + EFV+GE    +S+E+ +
Sbjct: 481 LLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHPKSKEIYV 540

Query: 575 VIQ 577
           ++ 
Sbjct: 541 MLN 543



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 194/403 (48%), Gaps = 49/403 (12%)

Query: 8   KFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAER 67
           +F       SL+  SK+  H+LQI A L    L   P    +L  S  +   L  D +  
Sbjct: 43  RFQEVERFASLIDKSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRL--DCSVF 100

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           +FN   +PN +  + +I  + QS    +A  +Y  M   G+  + +T+  VLK+C +  G
Sbjct: 101 VFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSLESG 160

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
            V    +H + +K+G   D++V  GL+ +Y++ G + CAR +F+    + LVS   +L  
Sbjct: 161 KV----LHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTC 216

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS---- 243
           + + GE+ KAR +F+ M ++D + W++MI GY  + G  + +  LF  M +   I     
Sbjct: 217 YSKMGELDKARSLFEGMKERDVVCWNVMIGGY-AQSGVPNESLKLFRRMLVAKAIPNEVT 275

Query: 244 ------------------W-----------------NSMIDGYAKIGDLVAAQQLFNEMP 268
                             W                  ++ID Y+K G L  A+ +F+ + 
Sbjct: 276 VLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIR 335

Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328
           +++V +W+ MI GYA HG  + AL LF EM   G +P  I+ +G +SAC   G ++ G+ 
Sbjct: 336 DKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRS 395

Query: 329 IHVFMKRSRITMDMIVQT--ALIDMYMKCGSLDEARRIFYSMT 369
               M R +  ++  ++    ++++  + G L+EA  +  +MT
Sbjct: 396 FFRLM-RDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMT 437



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 113/259 (43%), Gaps = 13/259 (5%)

Query: 329 IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
           IH  + R  +  + I+   L   Y   G LD +  +F +  + NV S++ +I     +  
Sbjct: 66  IHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRL 125

Query: 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
            + A   ++QM + G+  +   F  VL +CS      E  ++        G+   L   +
Sbjct: 126 FDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS-----LESGKVLHCQAIKLGLGSDLYVRT 180

Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN-VTLAEVVVEGLVELKA 507
            LVD+ +R G++  A  + + MP +  ++L  T +L C +    +  A  + EG   +K 
Sbjct: 181 GLVDVYARGGDVVCARQLFDKMPERSLVSL--TTMLTCYSKMGELDKARSLFEG---MKE 235

Query: 508 DDCGLYVLLSNIYADAGMWEHALRI-RKMMRKRKIKKE-TGRSVIEIDGNIKEFVSGEIF 565
            D   + ++   YA +G+   +L++ R+M+  + I  E T  +V+   G +    SG   
Sbjct: 236 RDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWI 295

Query: 566 DVQSEELELVIQSFVKTTI 584
               E   + I   V T +
Sbjct: 296 HSYIENKGIQINVHVGTAL 314


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 188/542 (34%), Positives = 294/542 (54%), Gaps = 46/542 (8%)

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           N Y+ N++IR  T +    +ALS Y   +R  L  D YT+P V+ AC  L+       IH
Sbjct: 79  NVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 138

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG-------- 187
             V+ MGF  D+++ N LI MY +   +  AR VFE   ++D+VSWN ++ G        
Sbjct: 139 DRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWN 198

Query: 188 ------------FVE------------------CGEMGK---AREVFDEMPQK----DAI 210
                       F+E                  CG +G     + V D M       D  
Sbjct: 199 EALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTT 258

Query: 211 SWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER 270
           + +I+I+ Y  K G++ +++ +F  M  KD +SWNSMI+ Y + G +  + ++F  M  R
Sbjct: 259 ASNILINMY-AKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKAR 317

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           ++ +W+ +I       +    L +   M  +GV PD+ +++  +  C+ + A   GK IH
Sbjct: 318 DIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIH 377

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
             + +  +  D+ V   LI+MY KCGSL  + ++F  M  K+V+++  +I+  GM G G+
Sbjct: 378 GCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGK 437

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
           +A++ F +ME  GI  D + F+ ++ ACSHSGL  EG   F  MK+   IEP++EHY+C+
Sbjct: 438 KAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACV 497

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           VDLLSR+  L++A + + SMP+KP+ ++WG LL ACR   +  +AE V E ++EL  DD 
Sbjct: 498 VDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDT 557

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570
           G YVL+SNIYA  G W+    IRK ++ R +KK+ G S +EI   +  F +G  F  Q E
Sbjct: 558 GYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFE 617

Query: 571 EL 572
           E+
Sbjct: 618 EV 619



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 177/382 (46%), Gaps = 54/382 (14%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFY----------VNMKRKGLLV 110
           ++D+A ++F ++   +    N++I GY  +    +AL  Y          VN  +  LL 
Sbjct: 165 DLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLL- 223

Query: 111 DNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF 170
              T   +L+ACG L  L  G  +H  ++  G+ CD    N LI MY+KCG++  ++ VF
Sbjct: 224 ---TITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVF 280

Query: 171 EGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMID----------GYR 220
            G + KD VSWN ++  +++ G+MG + +VF+ M  +D I+W+ +I           G R
Sbjct: 281 SGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLR 340

Query: 221 -----KKKGDISSARILFEHMPIKDLISW-----------------------NSMIDGYA 252
                + +G       +   +P+  L++                        N +I+ Y+
Sbjct: 341 MISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYS 400

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
           K G L  + Q+F  M  ++V +W+ +I     +G  K+A+  F EM   G+ PD ++ + 
Sbjct: 401 KCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVA 460

Query: 313 AISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-K 370
            I AC+  G ++ G  + H   K  +I   +     ++D+  +   LD+A     SM  K
Sbjct: 461 IIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLK 520

Query: 371 KNVISYNVMIAGLGMNGFGEEA 392
            +   +  +++   M+G  E A
Sbjct: 521 PDSSIWGALLSACRMSGDTEIA 542



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 38/286 (13%)

Query: 247 MIDGYAKIGDLVAAQQLFN-EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           +I  YA   D  ++  +F    P  NV+ W+ +I     +G   EAL L+ E     ++P
Sbjct: 54  LIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQP 113

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D  +    I+ACA +   ++ K IH  +       D+ +  ALIDMY +   LD+AR++F
Sbjct: 114 DTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVF 173

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ-----METEGIPKDDLIFL-GVLIACS 419
             M  ++V+S+N +I+G   NG+  EAL+ + Q     ME     K DL+ +  +L AC 
Sbjct: 174 EEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACG 233

Query: 420 HSG-----------LATEGYR-------IFQSMKRHCG-IEPKLEHYS-----------C 449
           H G           + T GY        I  +M   CG +    E +S            
Sbjct: 234 HLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNS 293

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLA 495
           ++++  + G++  +L + E+M  + ++  W T++ +C + ++  L 
Sbjct: 294 MINVYIQNGKMGDSLKVFENMKAR-DIITWNTIIASCVHSEDCNLG 338


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 160/407 (39%), Positives = 260/407 (63%), Gaps = 1/407 (0%)

Query: 166 ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGD 225
           AR++  G    DL     ++  + + G    AR  FDE P++D    ++M+  Y   +G+
Sbjct: 63  ARALKSGFAAADLFVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAY-VTRGE 121

Query: 226 ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
           ++ AR +F+ M  +D++SWN+MI GYA  G++  A+++FN M +R+ FSWS M+  Y + 
Sbjct: 122 VAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKG 181

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
              K+AL L+REM    V PD  +++  +SAC+ +GAL +G  +H F++ + + +D+ + 
Sbjct: 182 RRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLG 241

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
           TALIDMY KCG ++ + R+F+SM  K+V++++ MI GL  +GFG +AL  F++M +EG+ 
Sbjct: 242 TALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQ 301

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
            +++ F+GVLI+C+H GL ++G + F SM    G+ PK++HY C+VDLL R+G +E+A  
Sbjct: 302 PNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQ 361

Query: 466 IVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM 525
           ++  MP +P+  +W  LL ACR ++NV +AE  +  L  L     G YVLLSNIYA A  
Sbjct: 362 LIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANS 421

Query: 526 WEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           WE    +R+ +R+ +I++  GRS IE    I EF+SG+    +S+E+
Sbjct: 422 WEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKEI 468



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 128/262 (48%), Gaps = 39/262 (14%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           DVF+ N ++  Y   G +  AR VF+G   +D+VSWN ++ G+   GE+  AREVF+ M 
Sbjct: 105 DVFLCNVMLAAYVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMD 164

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFE------------------------------- 234
            +DA SWS M+  Y K +    +  +  E                               
Sbjct: 165 DRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAE 224

Query: 235 -HMPIK------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN 287
            H  ++      D+    ++ID YAK GD+  + ++F+ MP ++V +WS MI G A HG 
Sbjct: 225 VHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGF 284

Query: 288 PKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR-ITMDMIVQT 346
             +AL LF  ML +G++P+ ++ +G + +C  +G +  GK     M     +T  +    
Sbjct: 285 GHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYG 344

Query: 347 ALIDMYMKCGSLDEARRIFYSM 368
            ++D+  + G ++EA+++   M
Sbjct: 345 CMVDLLGRSGHIEEAKQLIRDM 366



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 13/229 (5%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A  +FN +   + +  ++M+  YT+    + AL  +  M+   +  D  T   VL A
Sbjct: 153 VDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSA 212

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  +  L  G E+H  V   G   DV +   LI MY+KCG +  +  VF    +KD+++W
Sbjct: 213 CSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTW 272

Query: 182 NLVLRGFVECGEMGKAREVFDEM----PQKDAISW-SIMIDGYRKKKGDISSARILFEHM 236
           + ++ G    G    A  +F  M     Q + +++  ++I       G +S  +  F  M
Sbjct: 273 SSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISC--THLGLVSDGKKYFSSM 330

Query: 237 PIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMI 279
            +   ++     +  M+D   + G +  A+QL  +MP E +   W  ++
Sbjct: 331 SVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALL 379


>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
 gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
 gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 187/574 (32%), Positives = 313/574 (54%), Gaps = 35/574 (6%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL--NMDQAERLFNQI 72
            +SL+   K T  +  + AQ+    +++     S++   L S ++L  + D +  +F   
Sbjct: 32  FISLIHACKDTASLRHVHAQILRRGVLS-----SRVAAQLVSCSSLLKSPDYSLSIFRNS 86

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
            + N ++ N +IRG T+++  + ++  ++ M R G+  D  T+PFVLK+   L     G 
Sbjct: 87  EERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGR 146

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
            +H   +K    CD FV   L+ MY+K G +  A  VFE S                   
Sbjct: 147 ALHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESP------------------ 188

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA 252
                    D + ++  + W+++I+GY + K D+  A  LF  MP ++  SW+++I GY 
Sbjct: 189 ---------DRIKKESILIWNVLINGYCRAK-DMHMATTLFRSMPERNSGSWSTLIKGYV 238

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
             G+L  A+QLF  MPE+NV SW+ +I+G++Q G+ + A+  + EML +G++P+  ++  
Sbjct: 239 DSGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAA 298

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
            +SAC++ GAL  G  IH ++  + I +D  + TAL+DMY KCG LD A  +F +M  K+
Sbjct: 299 VLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNMNHKD 358

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
           ++S+  MI G  ++G   +A++CF QM   G   D+++FL VL AC +S     G   F 
Sbjct: 359 ILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLGLNFFD 418

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV 492
           SM+    IEP L+HY  +VDLL RAG+L +A  +VE+MP+ P+L  W  L  AC+ H+  
Sbjct: 419 SMRLDYAIEPTLKHYVLVVDLLGRAGKLNEAHELVENMPINPDLTTWAALYRACKAHKGY 478

Query: 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
             AE V + L+EL  + CG Y+ L   +A  G  +   + R  ++KR  ++  G S IE+
Sbjct: 479 RRAESVSQNLLELDPELCGSYIFLDKTHASKGNIQDVEKRRLSLQKRIKERSLGWSYIEL 538

Query: 553 DGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586
           DG + +F +G+     ++E+ L +   +   I++
Sbjct: 539 DGQLNKFSAGDYSHKLTQEIGLKLDEIISLAIQK 572


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 187/536 (34%), Positives = 299/536 (55%), Gaps = 12/536 (2%)

Query: 59   TLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFV 118
            T ++ +A  +F Q+ + +    NTMI G   S   + ++  +V++ R GLL D +T   V
Sbjct: 954  TGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASV 1013

Query: 119  LKACGVLMGLVE-GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
            L+AC  L G     T+IH   +K G + D FV   LI +YSK G M  A  +F   +  D
Sbjct: 1014 LRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFD 1073

Query: 178  LVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR------- 230
            L SWN ++ G++  G+  KA  ++  M +    +  I +    K  G +   +       
Sbjct: 1074 LASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQA 1133

Query: 231  ILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
            ++ +     DL   + ++D Y K G++ +A+++FNE+P  +  +W+ MI G  ++G  + 
Sbjct: 1134 VVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEH 1193

Query: 291  ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
            AL+ +  M    V+PD  +    + AC+ + AL+ G+ IH    +     D  V T+L+D
Sbjct: 1194 ALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVD 1253

Query: 351  MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
            MY KCG++++AR +F       + S+N MI GL  +G  EEAL+ F +M++ G+  D + 
Sbjct: 1254 MYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVT 1313

Query: 411  FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
            F+GVL ACSHSGL +E Y  F SM++  GIEP++EHYSCLVD LSRAG + +A  ++ SM
Sbjct: 1314 FIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSM 1373

Query: 471  PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530
            P + + +++ TLL ACR   +    + V E L+ L+  D   YVLLSN+YA A  WE+  
Sbjct: 1374 PFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVA 1433

Query: 531  RIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586
              R MMRK  +KK+ G S +++   +  FV+G+    +S E   VI + V+  ++R
Sbjct: 1434 SARNMMRKANVKKDPGFSWVDLKNKVHLFVAGD----RSHEETDVIYNKVEYIMKR 1485



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 178/422 (42%), Gaps = 93/422 (22%)

Query: 131  GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE--IKDLVSWNLVLRGF 188
            G   H  ++  G   D F+ N LI MYSKCG +  AR +F+ +    +DLV+WN +L   
Sbjct: 645  GKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAH 704

Query: 189  VECGEMG--------------------------------KAREVFDEMPQKDAISWSIMI 216
             +    G                                 A E       K  + W + +
Sbjct: 705  ADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFV 764

Query: 217  DGY----RKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM----- 267
             G       K G I  AR+LF+ M ++D++ WN M+  Y   G    A  LF+E      
Sbjct: 765  AGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGL 824

Query: 268  -PE-----------------------------------------RNVFSWSIMIDGYAQH 285
             P+                                          +V +W+  +  + Q 
Sbjct: 825  RPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGSDVIAWNKTLSWFLQR 884

Query: 286  GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
            G   EA+  F +M+   V  D ++ +  +S  A +  L+LGK IH  + RS +   + V 
Sbjct: 885  GETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVG 944

Query: 346  TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
              LI+MY+K GS+  AR +F+ M + +++S+N MI+G  ++G  E ++  F  +   G+ 
Sbjct: 945  NCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLL 1004

Query: 406  KDDLIFLGVLIACSHSG----LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
             D      VL ACS  G    LAT+ +    +MK    ++  +   + L+D+ S++G++E
Sbjct: 1005 PDQFTVASVLRACSSLGGGCHLATQIHAC--AMKAGVVLDSFVS--TTLIDVYSKSGKME 1060

Query: 462  QA 463
            +A
Sbjct: 1061 EA 1062



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 152/318 (47%), Gaps = 10/318 (3%)

Query: 177  DLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMID---GYRKKKGDISSA 229
            D+++WN  L  F++ GE  +A + F +M       D +++ +M+    G    +      
Sbjct: 870  DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIH 929

Query: 230  RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
             I+      + +   N +I+ Y K G +  A+ +F +M E ++ SW+ MI G A  G  +
Sbjct: 930  GIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEE 989

Query: 290  EALYLFREMLCQGVRPDVISVMGAISACAQV-GALDLGKWIHVFMKRSRITMDMIVQTAL 348
             ++ +F ++L  G+ PD  +V   + AC+ + G   L   IH    ++ + +D  V T L
Sbjct: 990  CSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTL 1049

Query: 349  IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD 408
            ID+Y K G ++EA  +F +    ++ S+N M+ G  ++G   +AL+ +  M+  G   + 
Sbjct: 1050 IDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQ 1109

Query: 409  LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468
            +       A        +G +I Q++    G    L   S ++D+  + GE+E A  I  
Sbjct: 1110 ITLANAAKAAGGLVGLKQGKQI-QAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFN 1168

Query: 469  SMPMKPNLALWGTLLLAC 486
             +P  P+   W T++  C
Sbjct: 1169 EIP-SPDDVAWTTMISGC 1185



 Score = 42.0 bits (97), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 18/171 (10%)

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM--TKKNVISYNVMI 380
           L LGK  H  +  S    D  +   LI MY KCGSL  AR++F +   T ++++++N ++
Sbjct: 642 LPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAIL 701

Query: 381 ---AGLGMNGFGEEAL--KCFAQMETEGIPKDDLIFLGVLIACSHSGLAT-EGYRIFQSM 434
              A    +GF    L  + F       +     +F   L++ S S   +  GY +    
Sbjct: 702 SAHADKARDGFHLFRLLRRSFVSATRHTLAP---VFKMCLLSASPSAAESLHGYAV---- 754

Query: 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
               G++  +     LV++ ++ G + +A  + + M ++ ++ LW  ++ A
Sbjct: 755 --KIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLR-DVVLWNVMMKA 802


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 213/654 (32%), Positives = 322/654 (49%), Gaps = 93/654 (14%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTS--PNTLNMDQAERL 68
           L +   SL Q  +   HIL+           T  F  + L   L S   N +    A  +
Sbjct: 22  LNSTTASLSQTRQAHAHILK-----------TGLFNDTHLATKLLSHYANNMCFADATLV 70

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
            + + +PN +  +T+I  +++      ALS +  M  +GL+ DN   P  +KAC  L  L
Sbjct: 71  LDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSAL 130

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
               ++HG     GF  D FV + L+ MY KC  +  A  VF+     D+VSW+ ++  +
Sbjct: 131 KPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAY 190

Query: 189 VECGEMGKAREVFDEMP----QKDAISWS------------------------------- 213
              G + +A+ +F EM     Q + ISW+                               
Sbjct: 191 ARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDG 250

Query: 214 -------------------IMIDGYRKKKG-----DISSARI--------------LFEH 235
                              I+I GY  K+G      +SSA I              +F+ 
Sbjct: 251 TTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQ 310

Query: 236 MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER----NVFSWSIMIDGYAQHGNPKEA 291
           M   D+ S N+ I G ++ G + ++ +LF ++ ++    NV SW+ MI   +Q+G   EA
Sbjct: 311 MDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEA 370

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           L LFREM   GV+P+ +++   + AC  + AL  GK  H F  R  I+ D+ V +ALIDM
Sbjct: 371 LELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDM 430

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y KCG +  +R  F  +  KN++ +N +IAG  M+G  +EA++ F  M+  G   D + F
Sbjct: 431 YAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISF 490

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
             VL ACS SGL  EG   F SM    GIE ++EHY+C+V LLSRAG+LEQA  ++  MP
Sbjct: 491 TCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMP 550

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           + P+  +WG LL +CR H NV+L EV  E L EL+  + G Y+LLSNIYA  GMW    R
Sbjct: 551 VNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNR 610

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
           +R MM+ + ++K  G S IE+   +   ++G   D    ++  +I+   K ++E
Sbjct: 611 VRDMMKNKGLRKNPGCSWIEVKNKVHMLLAG---DKSHPQMTQIIEKLDKLSME 661


>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
          Length = 618

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 169/516 (32%), Positives = 284/516 (55%), Gaps = 40/516 (7%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D+AE LF ++ + N    NTM+  YT +   + A + +  M  +               
Sbjct: 114 VDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVR--------------- 158

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
                                   D    N L+    + G+M  AR +F+    +++++W
Sbjct: 159 ------------------------DAGSWNILLAALVRSGNMDKARKLFDRMPERNVMAW 194

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
             ++ G    G + +AR +FD MP+++ +SW+ MI GY +    I  A  LF  MP +D+
Sbjct: 195 TTMVAGIARSGSVDEARALFDGMPERNVVSWNAMISGYARNH-RIDEAHDLFMKMPTRDI 253

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
            SWN MI G+ +  DL  AQ LF++MP RNV +W+ M++GY Q    + AL +F  ML +
Sbjct: 254 ASWNIMITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVE 313

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
           G+RP+ ++ +GA+ AC+ +  L  G+ +H  + ++    D  +++ L+++Y KCG +  A
Sbjct: 314 GIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLA 373

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
           R++F    +K+VIS+N MIA    +G G EA+  + +M+ +G   +D+ ++G+L ACSHS
Sbjct: 374 RKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHS 433

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           GL  EG RIF+ M +   I  + EHY+CL+DL SRAG L  A  ++  + ++P+  +W  
Sbjct: 434 GLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNA 493

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           LL  C +H N ++ ++    L+E + ++ G Y LL NIYA AG W+ A +IR  M  R +
Sbjct: 494 LLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGL 553

Query: 542 KKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           KK+ G S IE++  +  FVS +    +S+ +  ++Q
Sbjct: 554 KKQPGCSWIEVENKVHVFVSRDKSHSESDLINSLLQ 589



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/400 (28%), Positives = 209/400 (52%), Gaps = 19/400 (4%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIK-DLVSWNLVLRGFVECGEMGKAREVFDEM 204
           DV     L+  Y++ G +  AR++F+  + + ++V+W  +L G+   G + +A  +F  M
Sbjct: 65  DVVSWTALVAAYARQGMLHDARALFDRPDARRNVVTWTALLSGYARAGRVDEAEALFQRM 124

Query: 205 PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
           P+++ +SW+ M++ Y    G +  A  LF+ MP++D  SWN ++    + G++  A++LF
Sbjct: 125 PERNVVSWNTMLEAY-TSAGRVRDAWTLFDGMPVRDAGSWNILLAALVRSGNMDKARKLF 183

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
           + MPERNV +W+ M+ G A+ G+  EA  LF  M       +V+S    IS  A+   +D
Sbjct: 184 DRMPERNVMAWTTMVAGIARSGSVDEARALFDGM----PERNVVSWNAMISGYARNHRID 239

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
                 +FMK    T D+     +I  +++   L+ A+ +F  M ++NVI++  M+ G  
Sbjct: 240 EAH--DLFMKMP--TRDIASWNIMITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNGYL 295

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444
            +   E AL+ F  M  EGI  + + FLG + ACS+    +EG ++ Q +   C    + 
Sbjct: 296 QSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMI---CKTSFQF 352

Query: 445 EHY--SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
           + +  S L++L ++ GE+  A  + + +  + ++  W  ++ A  +H     A  + E +
Sbjct: 353 DTFIESTLMNLYAKCGEIRLARKVFD-LSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKM 411

Query: 503 VE--LKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540
            E   K +D   YV L +  + +G+ +  LRI + M K +
Sbjct: 412 QEKGYKPNDV-TYVGLLSACSHSGLVDEGLRIFEYMVKDR 450



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 171/361 (47%), Gaps = 23/361 (6%)

Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI-KDLISWNSMID 249
            G +  AR +FD  P +D +SW+ ++  Y  ++G +  AR LF+     +++++W +++ 
Sbjct: 48  AGRVSDARRLFDRTPDRDVVSWTALVAAY-ARQGMLHDARALFDRPDARRNVVTWTALLS 106

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
           GYA+ G +  A+ LF  MPERNV SW+ M++ Y   G  ++A  LF  M  +    D  S
Sbjct: 107 GYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVR----DAGS 162

Query: 310 VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369
               ++A  + G +D  + +   M    +    +  T ++    + GS+DEAR +F  M 
Sbjct: 163 WNILLAALVRSGNMDKARKLFDRMPERNV----MAWTTMVAGIARSGSVDEARALFDGMP 218

Query: 370 KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR 429
           ++NV+S+N MI+G   N   +EA   F +M T  I   +++  G +              
Sbjct: 219 ERNVVSWNAMISGYARNHRIDEAHDLFMKMPTRDIASWNIMITGFI----QDRDLERAQD 274

Query: 430 IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM---PMKPNLALWGTLLLAC 486
           +F  M R   I      ++ +++   ++ + E AL I   M    ++PN   +   + AC
Sbjct: 275 LFDKMPRRNVIT-----WTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDAC 329

Query: 487 RNHQNVTLAEVVVEGLVELKAD-DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
            N   ++  + V + + +     D  +   L N+YA  G    A ++  + +++ +    
Sbjct: 330 SNLAGLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWN 389

Query: 546 G 546
           G
Sbjct: 390 G 390



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 173/377 (45%), Gaps = 81/377 (21%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           NMD+A +LF+++ + N     TM+ G  +S +  +A + +  M  +              
Sbjct: 175 NMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMPER-------------- 220

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
                                    +V   N +I  Y++   +  A  +F     +D+ S
Sbjct: 221 -------------------------NVVSWNAMISGYARNHRIDEAHDLFMKMPTRDIAS 255

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARIL-------- 232
           WN+++ GF++  ++ +A+++FD+MP+++ I+W+ M++GY +     ++ +I         
Sbjct: 256 WNIMITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGI 315

Query: 233 -------------------------FEHMPIKDLISWNSMIDG-----YAKIGDLVAAQQ 262
                                       M  K    +++ I+      YAK G++  A++
Sbjct: 316 RPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARK 375

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F+   E++V SW+ MI  YA HG   EA++L+ +M  +G +P+ ++ +G +SAC+  G 
Sbjct: 376 VFDLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGL 435

Query: 323 LDLGKWIHVFMKRSR-ITMDMIVQTALIDMYMKCGSLDEARRIFYSM-TKKNVISYNVMI 380
           +D G  I  +M + R I +     T LID+  + G L +A+R+ + +  + +   +N ++
Sbjct: 436 VDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALL 495

Query: 381 AGLGMNGFGEEALKCFA 397
            G   N  G E++   A
Sbjct: 496 GGC--NSHGNESIGDLA 510



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 51/248 (20%)

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           N  +   A  G +  A++LF+  P+R+V SW+ ++  YA+ G   +A  LF        R
Sbjct: 39  NRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFD-------R 91

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           PD                           +R+ +T      TAL+  Y + G +DEA  +
Sbjct: 92  PDA--------------------------RRNVVTW-----TALLSGYARAGRVDEAEAL 120

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC-SHSGL 423
           F  M ++NV+S+N M+      G   +A   F     +G+P  D     +L+A    SG 
Sbjct: 121 FQRMPERNVVSWNTMLEAYTSAGRVRDAWTLF-----DGMPVRDAGSWNILLAALVRSGN 175

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             +  ++F  M      E  +  ++ +V  ++R+G +++A  + + MP + N+  W  ++
Sbjct: 176 MDKARKLFDRMP-----ERNVMAWTTMVAGIARSGSVDEARALFDGMPER-NVVSWNAMI 229

Query: 484 LA-CRNHQ 490
               RNH+
Sbjct: 230 SGYARNHR 237


>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
 gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
 gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 581

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 178/476 (37%), Positives = 276/476 (57%), Gaps = 12/476 (2%)

Query: 108 LLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCAR 167
           + +DNY+    + A   +  L  G++ H   +K+    D FV+N LI MYS C +   AR
Sbjct: 89  MTLDNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASAR 148

Query: 168 SVFEGSE--IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISW-SIMIDGYR 220
            V + +     D+VSWN ++ G++  G   KA + F +M ++    D ++  ++++   R
Sbjct: 149 LVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACAR 208

Query: 221 K---KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSI 277
               K G +  A ++     I   I  +S++  YAK G +  A+++FN MPERNV  W+ 
Sbjct: 209 TGAMKVGSLCHALVVLNGFEINCYIG-SSLVSMYAKCGMVEEARRVFNRMPERNVVCWTS 267

Query: 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337
           MI G  Q G  KEA+ LFR+M   GV+ D  ++   +S+C Q+GALDLG+++H +     
Sbjct: 268 MIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHG 327

Query: 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFA 397
           +  ++ V+ +LIDMY KCG +++A +IF+ +TK++V ++ VMI G  MNG   EAL  FA
Sbjct: 328 LGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFA 387

Query: 398 QMETEG-IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456
           QME E  +  +++IFLGVL ACSH GL  +GY  F  M +   + P++EHY C+VDLL R
Sbjct: 388 QMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGR 447

Query: 457 AGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLL 516
           A  L +A   ++ MP+ P++ +W +LL ACR    V LAE   E + +L+   CG +VLL
Sbjct: 448 AKLLAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPKRCGGHVLL 507

Query: 517 SNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           SN+YA    W     +R  M   +  K+ G S IE+DG I EF +G+    ++E +
Sbjct: 508 SNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVDGCIHEFFAGDESHFETEAI 563



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 9/216 (4%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +++A R+FN++ + N     +MI G TQS   ++A+  + +M+  G+  D+ T   V+ +
Sbjct: 247 VEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSS 306

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           CG +  L  G  +H      G   ++ V N LI MYSKCG +  A  +F G   +D+ +W
Sbjct: 307 CGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTW 366

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMI---------DGYRKKKGDISSARIL 232
            +++ GF   G   +A ++F +M  +D +  + +I          G   ++G     R+ 
Sbjct: 367 TVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMS 426

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
             +  +  +  +  M+D   +   L  A+Q   +MP
Sbjct: 427 KVYNLVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMP 462


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 187/518 (36%), Positives = 290/518 (55%), Gaps = 31/518 (5%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A ++F+++   +T + NTMI G  ++     ++  + +M  +G+ +D+ T   VL A   
Sbjct: 157 ARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAE 216

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           +  +  G  I    +K+GF  D +V+ GLI ++SKC  +  AR +F      DLVS+N +
Sbjct: 217 MQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNAL 276

Query: 185 LRGFVECGEMGKAREVFDEM-PQKDAISWSIM------------------IDGYRKKKGD 225
           + GF   GE   A + F E+      +S S M                  I G+  K G 
Sbjct: 277 ISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGT 336

Query: 226 ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
           I    +              ++   Y+++ ++  A+QLF+E  E+ V +W+ MI GYAQ 
Sbjct: 337 ILQPSV------------STALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQS 384

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
           G  + A+ LF+EM+     P+ +++   +SACAQ+GAL  GK +H  +K   +  ++ V 
Sbjct: 385 GLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVS 444

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
           TALIDMY KCG++ EA ++F   ++KN +++N MI G G++G+G+EALK F +M   G  
Sbjct: 445 TALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQ 504

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
              + FL VL ACSH+GL  EG  IF +M     IEP  EHY+C+VD+L RAG+LE+AL 
Sbjct: 505 PSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALE 564

Query: 466 IVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM 525
            +  MP++P  A+WGTLL AC  H++  LA V  E L EL   + G YVLLSNIY+    
Sbjct: 565 FIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERN 624

Query: 526 WEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           +  A  +R+ ++KR + K  G ++IE++G    FV G+
Sbjct: 625 FPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGD 662



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/481 (24%), Positives = 227/481 (47%), Gaps = 16/481 (3%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           +N L++L+  + T  H+ +  AQL  N    +  T+++L   L          A  LF  
Sbjct: 8   RNTLLALISKACTFPHLAETHAQLIRNGYQHDLATVTKLTQKLFDVGATR--HARALFFS 65

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM-KRKGLLVDNYTYPFVLKACGVLMGLVE 130
           + +P+ ++ N +I+G++ S +   ++SFY ++ K   L  DN+TY F + A         
Sbjct: 66  VPKPDIFLFNVLIKGFSFSPD-ASSISFYTHLLKNTTLSPDNFTYAFAISASP---DDNL 121

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G  +H   V  GF  ++FV + L+ +Y K   +  AR VF+    +D V WN ++ G V 
Sbjct: 122 GMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVR 181

Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI--LFEHMPIK-----DLIS 243
                 + +VF +M  +     S  +        ++   ++    + + +K     D   
Sbjct: 182 NCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYV 241

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
              +I  ++K  D+  A+ LF  + + ++ S++ +I G++ +G  + A+  FRE+L  G 
Sbjct: 242 LTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQ 301

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
           R    +++G I   +  G L L   I  F  +S   +   V TAL  +Y +   +D AR+
Sbjct: 302 RVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQ 361

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           +F   ++K V ++N MI+G   +G  E A+  F +M T     + +    +L AC+  G 
Sbjct: 362 LFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGA 421

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
            + G  + Q +K    +E  +   + L+D+ ++ G + +A  + + +  + N   W T++
Sbjct: 422 LSFGKSVHQLIKSK-NLEQNIYVSTALIDMYAKCGNISEASQLFD-LTSEKNTVTWNTMI 479

Query: 484 L 484
            
Sbjct: 480 F 480



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 145/316 (45%), Gaps = 8/316 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D A  LF  I +P+   +N +I G++ +   + A+ ++  +   G  V + T   ++ 
Sbjct: 254 DVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIP 313

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
                  L     I G  VK G +    V   L  +YS+   +  AR +F+ S  K + +
Sbjct: 314 VSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAA 373

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK---KKGDISSARILFEHMP 237
           WN ++ G+ + G    A  +F EM   +     + I        + G +S  + + + + 
Sbjct: 374 WNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIK 433

Query: 238 IKDL----ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
            K+L        ++ID YAK G++  A QLF+   E+N  +W+ MI GY  HG   EAL 
Sbjct: 434 SKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALK 493

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI-HVFMKRSRITMDMIVQTALIDMY 352
           LF EML  G +P  ++ +  + AC+  G +  G  I H  + + RI         ++D+ 
Sbjct: 494 LFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDIL 553

Query: 353 MKCGSLDEARRIFYSM 368
            + G L++A      M
Sbjct: 554 GRAGQLEKALEFIRKM 569



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 105/489 (21%), Positives = 211/489 (43%), Gaps = 44/489 (8%)

Query: 106 KGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGC 165
           +G +  N     + KAC          E H ++++ G+  D+  V  L       G    
Sbjct: 3   RGDISRNTLLALISKACT----FPHLAETHAQLIRNGYQHDLATVTKLTQKLFDVGATRH 58

Query: 166 ARSVFEGSEIKDLVSWNLVLRGFVECGEMGK----AREVFDEMPQKDAISWSIMIDGYRK 221
           AR++F      D+  +N++++GF    +          + +     D  +++  I     
Sbjct: 59  ARALFFSVPKPDIFLFNVLIKGFSFSPDASSISFYTHLLKNTTLSPDNFTYAFAISA--- 115

Query: 222 KKGDISSARILFEHMPI----KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSI 277
              D +    L  H  +     +L   ++++D Y K   +  A+++F++MP+R+   W+ 
Sbjct: 116 -SPDDNLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNT 174

Query: 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337
           MI G  ++    +++ +F++M+ QGVR D  +V   + A A++  + +G  I     +  
Sbjct: 175 MITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLG 234

Query: 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFA 397
              D  V T LI ++ KC  +D AR +F  + K +++SYN +I+G   NG  E A+K F 
Sbjct: 235 FHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFR 294

Query: 398 QMETEGIPKDDLIFLGVLIACS-----HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
           ++   G        +G++   S     H     +G+     +K    ++P +   + L  
Sbjct: 295 ELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGF----CVKSGTILQPSVS--TALTT 348

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL-----VELKA 507
           + SR  E++ A  + +    K  +A W  ++     +    L E+ +         E   
Sbjct: 349 IYSRLNEIDLARQLFDESSEK-TVAAWNAMI---SGYAQSGLTEMAISLFQEMMTTEFTP 404

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEID-----GNIKEFVSG 562
           +   +  +LS   A  G       + ++++ + +++    S   ID     GNI E  + 
Sbjct: 405 NPVTITSILSAC-AQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISE--AS 461

Query: 563 EIFDVQSEE 571
           ++FD+ SE+
Sbjct: 462 QLFDLTSEK 470


>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
          Length = 467

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 185/491 (37%), Positives = 270/491 (54%), Gaps = 71/491 (14%)

Query: 83  MIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMG 142
           MIRG++QS  P K +  Y  M       + +TY F++  C     L EG ++HG VV  G
Sbjct: 1   MIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANG 60

Query: 143 FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFD 202
           +  +VFV   L+ +Y+  G     R                            KAR VFD
Sbjct: 61  YCTNVFVRTSLVNLYAIAGGYDGVR----------------------------KARRVFD 92

Query: 203 EMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQ 262
           E+           +D                     ++++SWNS++ GY + GD+  A++
Sbjct: 93  EI-----------VD---------------------RNIVSWNSLLAGYVRCGDVDGARR 120

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F+EMPERNV SW+ MI G AQ G  K+AL+LF EM   GV+ D ++++ A+SACA++G 
Sbjct: 121 IFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGD 180

Query: 323 LDLGKWIHVFMKR----SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNV 378
           L LG WIH ++          + + +  +LI MY  CG +D+A ++F  M +++ IS+  
Sbjct: 181 LKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTS 240

Query: 379 MIAGLGMNGFGEEALKCFAQME----TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434
           MI G    G  EEAL  F  M+     EG P D + F+GVL ACSH+G   +G   F+ M
Sbjct: 241 MITGFAKQGHAEEALGVFQWMQRLGTDEGRP-DGITFIGVLCACSHAGFVDQGRHFFECM 299

Query: 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTL 494
            +  GI P++EHY C+VDLLSRAG L++A  ++ESMPMKPN A+WG LL  CR H+N  L
Sbjct: 300 NKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAEL 359

Query: 495 AEVVVEGL-VELKADDCGLY-VLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
           A  V + L +ELK D    Y VLLSN+YA A  W+    +R+ M +  ++K  GRS ++I
Sbjct: 360 ASHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQI 419

Query: 553 DGNIKEFVSGE 563
           +G + +FV+G+
Sbjct: 420 NGVVHDFVAGD 430



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 120/263 (45%), Gaps = 19/263 (7%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D A R+F+++ + N     TMI G  Q    ++AL  +  M+R G+ +D       L 
Sbjct: 114 DVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALS 173

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCD----VFVVNGLIGMYSKCGHMGCARSVFEGSEIK 176
           AC  L  L  GT IH  + +     +    V + N LI MY+ CG +  A  VF G + +
Sbjct: 174 ACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQR 233

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMP-------QKDAISWSIMIDGYRKKKGDISSA 229
             +SW  ++ GF + G   +A  VF  M        + D I++ I +       G +   
Sbjct: 234 STISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITF-IGVLCACSHAGFVDQG 292

Query: 230 RILFEHMPIKDLI-----SWNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYA 283
           R  FE M  K  I      +  M+D  ++ G L  A +L   MP + N   W  ++ G  
Sbjct: 293 RHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCR 352

Query: 284 QHGNPKEALYLFREMLCQGVRPD 306
            H N + A ++ +++  + ++PD
Sbjct: 353 IHKNAELASHVAQKLALE-LKPD 374


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 180/531 (33%), Positives = 299/531 (56%), Gaps = 17/531 (3%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           +A R+F+++   ++   NTMI GY Q    + ++  +++M   G + D  +    ++ACG
Sbjct: 275 EARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDMLSITSTIRACG 333

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
               L  G  +H  ++  GF CD    N LI MY+KCG +  A+ VF+ ++ KD V+WN 
Sbjct: 334 QSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNS 393

Query: 184 VLRGFVECGEMGKAREVFDEMP---QKDAISWSIMIDGYRKKKGDISSARILFEHMPI-- 238
           ++ G+ + G   +  E F  M    + D++++ +++  +  +  DI+  R +  H  +  
Sbjct: 394 LINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIF-SQLADINQGRGI--HCDVIK 450

Query: 239 ----KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
                +LI  NS++D YAK G++    ++F+ M   ++ SW+ +I       +      +
Sbjct: 451 FGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQM 510

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
             EM  +G+ PD  +V+G +  C+ +     GK IH ++ +S    ++ +  ALI+MY K
Sbjct: 511 INEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSK 570

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CGSL+   ++F  M +K+V+++  +I+  GM G G++ALK F  ME  G+  D + F+  
Sbjct: 571 CGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAF 630

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           + ACSHSG+  EG R F  MK    +EP++EHY+C+VDLL+R+G L QA   + SMPMKP
Sbjct: 631 IFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKP 690

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           + +LWG LL ACR   N  +A+ V + ++EL +DD G YVL+SNIYA  G W+    +R 
Sbjct: 691 DASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRN 750

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSG----EIFDVQSEELELVIQSFVK 581
            M+ + +KKE G S IEI   +  F +G    E +D   + LE +++   K
Sbjct: 751 SMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLMAK 801



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/440 (29%), Positives = 231/440 (52%), Gaps = 25/440 (5%)

Query: 60  LNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVL 119
           +++D A  +F ++   ++   N++I GY  +   + AL  Y   +  G++ D +T   VL
Sbjct: 170 VDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVL 229

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
            ACG LM + EG  +HG + K+G   DV + NGL+ MY K   +  AR VF    +KD V
Sbjct: 230 LACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSV 289

Query: 180 SWNLVLRGFVECGEMGKAREVFDEM-----PQKDAISWSIMIDGYRKKKGDISSARILFE 234
           +WN ++ G+ + G    + ++F +M     P   +I+ +I   G   + GD+   + + +
Sbjct: 290 TWNTMICGYAQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACG---QSGDLQVGKFVHK 346

Query: 235 HMPIK----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
           ++       D ++ N +ID YAK GDL+AAQ++F+    ++  +W+ +I+GY Q G  KE
Sbjct: 347 YLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKE 406

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
            L  F+ M+    +PD ++ +  +S  +Q+  ++ G+ IH  + +     ++I+  +L+D
Sbjct: 407 GLESFK-MMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLD 465

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           +Y KCG +D+  ++F  M+  ++IS+N +IA            +   +M TEG+  D+  
Sbjct: 466 VYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEAT 525

Query: 411 FLGVLIACS-----HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
            LG+L  CS       G    GY IF+S     G E  +   + L+++ S+ G LE  + 
Sbjct: 526 VLGILPMCSLLAVRRQGKEIHGY-IFKS-----GFESNVPIGNALIEMYSKCGSLENCIK 579

Query: 466 IVESMPMKPNLALWGTLLLA 485
           + + M  K ++  W  L+ A
Sbjct: 580 VFKYMKEK-DVVTWTALISA 598



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 135/459 (29%), Positives = 235/459 (51%), Gaps = 26/459 (5%)

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           N Y+ N++IR  T +    +AL +Y  M+ K L  D +T+P V+ +C  ++ L  G  +H
Sbjct: 85  NVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVH 144

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
              ++MGF  D+++ N LI MYS+   +  AR VFE    +D VSWN ++ G+   G   
Sbjct: 145 EHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWE 204

Query: 196 KAREVFDE------MPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-DLISWNSMI 248
            A +++ +      +P    +S  ++  G      +  +   + E + I  D+I  N ++
Sbjct: 205 DALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLL 264

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
             Y K   L  A+++F++M  ++  +W+ MI GYAQ G  + ++ LF +M+  G  PD++
Sbjct: 265 SMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDML 323

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           S+   I AC Q G L +GK++H ++  S    D +    LIDMY KCG L  A+ +F + 
Sbjct: 324 SITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTT 383

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
             K+ +++N +I G   +G+ +E L+ F  M+ E  P D + F  VL+    S LA    
Sbjct: 384 KCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMERKP-DSVTF--VLLLSIFSQLAD--- 437

Query: 429 RIFQSMKRHC-----GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
            I Q    HC     G E +L   + L+D+ ++ GE++  L +   M    ++  W T++
Sbjct: 438 -INQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAH-DIISWNTVI 495

Query: 484 LACRNHQNVTLA-----EVVVEGLVELKADDCGLYVLLS 517
            +  +  + T+      E+  EGL+  +A   G+  + S
Sbjct: 496 ASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCS 534



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/403 (26%), Positives = 186/403 (46%), Gaps = 25/403 (6%)

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG-SEIKDLVSWNLVLRGFVECG 192
           +H  ++  G    V     LI  Y++      + SVF   S   ++  WN ++R     G
Sbjct: 41  VHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNG 100

Query: 193 EMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEH-MPI---KDLISW 244
              +A   + EM +K    DA ++  +I+   +   D+    I+ EH M +    DL   
Sbjct: 101 LFTQALGYYTEMREKKLQPDAFTFPSVINSCARIL-DLELGCIVHEHAMEMGFESDLYIG 159

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           N++ID Y++  DL  A+ +F EM  R+  SW+ +I GY  +G  ++AL ++ +    G+ 
Sbjct: 160 NALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMV 219

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           PD  ++   + AC  + A+  G  +H  +++  I  D+I+   L+ MY K   L EARR+
Sbjct: 220 PDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRV 279

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F  M  K+ +++N MI G    G  E ++K F  M  +G   D L     + AC  SG  
Sbjct: 280 FSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDL 338

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
             G  + + +    G E      + L+D+ ++ G+L  A  + ++   K ++  W +L+ 
Sbjct: 339 QVGKFVHKYLI-GSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVT-WNSLI- 395

Query: 485 ACRNHQNVTLAEVVVEGLVELK------ADDCGLYVLLSNIYA 521
                   T +    EGL   K        D   +VLL +I++
Sbjct: 396 -----NGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFS 433



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 9/247 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           MD   ++F+ +   +    NT+I       +          M+ +GL+ D  T   +L  
Sbjct: 473 MDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPM 532

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C +L    +G EIHG + K GF  +V + N LI MYSKCG +     VF+  + KD+V+W
Sbjct: 533 CSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTW 592

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR---KKKGDISSARILFEHMPI 238
             ++  F   GE  KA + F +M     +  S+    +       G +      F+ M  
Sbjct: 593 TALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKT 652

Query: 239 K-----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS-WSIMIDGYAQHGNPKEAL 292
                  +  +  ++D  A+ G L  A++    MP +   S W  ++      GN   A 
Sbjct: 653 DYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQ 712

Query: 293 YLFREML 299
            + +++L
Sbjct: 713 RVSKKIL 719


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 188/504 (37%), Positives = 284/504 (56%), Gaps = 49/504 (9%)

Query: 115 YPFV--LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGM--YSKCGHMGCARSVF 170
           YP +  L +C  L  L   T+IH + +  G   D FV + ++     S  G +  AR +F
Sbjct: 36  YPILRHLSSCKTLKDL---TQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLF 92

Query: 171 EGSEIKDLVSWNLVLRGF----------VECGEMGKAREVF-------------DEMPQ- 206
                 D+   N ++R +          V   EM ++  VF              E+P  
Sbjct: 93  YRIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSL 152

Query: 207 --KDAISWSIMIDGYRKKK-------------GDISSARILFEHMPIKDLISWNSMIDGY 251
              +AI   +   G+  +              G I SA ++F+  P  D  SWN MI GY
Sbjct: 153 RLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGY 212

Query: 252 AKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
            K G   +A+++F  MP+R+V SWS+MI+GY Q    KE L LF++M+ + + P+   ++
Sbjct: 213 LKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLV 272

Query: 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
            A+SACA +GA++ G+WI  +M+R  + + + + TALIDMY KCGS++ A  +F+ M +K
Sbjct: 273 NALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEK 332

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           NV++++ MI GL +NG G++AL  F+QME +G+  +++ F+G+L ACSHS L  EG   F
Sbjct: 333 NVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFF 392

Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN 491
            SM    G++P   H+ C+VDL  RAG L+QA  +++SMP KPN A+WG LL ACR H +
Sbjct: 393 HSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGD 452

Query: 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
             L E V + L+EL  +  G YVLLSNIYA  G W+    +R+MMR+R++ K  G S I+
Sbjct: 453 TELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFID 512

Query: 552 IDGNIKEFVSGEIFDVQSEELELV 575
           +   I EFV+G   D    +LE++
Sbjct: 513 LGDTIHEFVAG---DSSHPQLEMI 533



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 130/421 (30%), Positives = 218/421 (51%), Gaps = 43/421 (10%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERLFN 70
           K P++  L   KT   + QI AQ  T  + ++ F  S++L  +  SP+  ++  A  LF 
Sbjct: 35  KYPILRHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHG-SIPYARFLFY 93

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV-DNYTYPFVLKACGVLMGLV 129
           +I +P+ ++ NT+IR Y  S NP  A+ FY  M    ++  D +T+P +LKAC  +  L 
Sbjct: 94  RIRKPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLR 153

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
            G  IH  V K+G+  +V V N L+ MY+ CG +  A  VF+ +   D  SWN+++ G++
Sbjct: 154 LGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYL 213

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGY----RKKKG-----DISSARI--------- 231
           +CG    AR +F+ MP +D +SWS+MI+GY    R K+G     D+   +I         
Sbjct: 214 KCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVN 273

Query: 232 ---LFEHMPIKDLISW-----------------NSMIDGYAKIGDLVAAQQLFNEMPERN 271
                 H+   +   W                  ++ID Y+K G +  A ++F++M E+N
Sbjct: 274 ALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKN 333

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIH 330
           V +WS MI+G A +G  K+AL LF +M  QGV+P+ ++ +G ++AC+    +D G  + H
Sbjct: 334 VLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFH 393

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNGFG 389
                  +  +      ++D+Y + G LD+A+ +  SM  K N   +  ++    ++G  
Sbjct: 394 SMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDT 453

Query: 390 E 390
           E
Sbjct: 454 E 454


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 188/547 (34%), Positives = 297/547 (54%), Gaps = 55/547 (10%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRK-GLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVV 139
           N+++  Y Q  +  +A+  +  M    G+  D  +   VL AC  +     G ++HG  +
Sbjct: 199 NSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYAL 258

Query: 140 KMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKARE 199
           + G   DVFV N ++ MY+KCG M  A  VFE  ++KD+VSWN ++ G+ + G    A  
Sbjct: 259 RSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALG 318

Query: 200 VFDEMPQK----DAISWSIMIDGYRKKKGDISSARI------------------------ 231
           +F+++ ++    + ++WS +I GY ++     +  +                        
Sbjct: 319 LFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCA 378

Query: 232 ---------------------LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-- 268
                                L E+ P  DL+  N++ID Y+K     AA+ +F+ +P  
Sbjct: 379 LAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPK 438

Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG--VRPDVISVMGAISACAQVGALDLG 326
           +R+V +W+++I G AQHG   EAL LF +ML     V P+  ++  A+ ACA++GAL  G
Sbjct: 439 DRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFG 498

Query: 327 KWIHVFMKRSRITMDMI-VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
           + IH ++ R+R    M+ V   LIDMY K G +D AR +F +M ++N +S+  ++ G GM
Sbjct: 499 RQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGM 558

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           +G GEEAL+ F +M+  G+  D + F+ VL ACSHSG+  +G   F  M +  G+ P  E
Sbjct: 559 HGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAE 618

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
           HY+C+VDLLSRAG L++A+ ++  MPMKP  A+W  LL ACR + NV L E     L+EL
Sbjct: 619 HYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLEL 678

Query: 506 KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIF 565
           ++ + G Y LLSNIYA+A  W+   RIR +M+   IKK  G S ++       F +G+  
Sbjct: 679 ESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWS 738

Query: 566 DVQSEEL 572
              S+++
Sbjct: 739 HPMSQQI 745



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 157/524 (29%), Positives = 249/524 (47%), Gaps = 61/524 (11%)

Query: 17  SLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPN 76
           +L    K+      I  QL    L  +P  +  + ++  SP    +    RL    +   
Sbjct: 34  TLFHQCKSLASAELIHQQLLVQGLPHDPTHIISMYLTFNSPAKA-LSVLRRLHPSSH--T 90

Query: 77  TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHG 136
            +  N +IR        +  L  Y  M+R G   D+YT+PFVLKACG +     G  +H 
Sbjct: 91  VFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHA 150

Query: 137 EVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE---IKDLVSWNLVLRGFVECGE 193
            V   GF  +VFV NGL+ MY +CG    AR VF+      + DLVSWN ++  +++ G+
Sbjct: 151 VVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGD 210

Query: 194 MGKAREVFDEMPQ-----KDAIS-------------WS--IMIDGYR------------- 220
             +A ++F+ M +      DA+S             WS    + GY              
Sbjct: 211 SIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGN 270

Query: 221 ------KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER---- 270
                  K G +  A  +FE M +KD++SWN+M+ GY++IG    A  LF ++ E     
Sbjct: 271 AVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIEL 330

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           NV +WS +I GYAQ G   EAL +FR+M   G  P+V++++  +S CA  G L  GK  H
Sbjct: 331 NVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETH 390

Query: 331 VFMKRSRITM-------DMIVQTALIDMYMKCGSLDEARRIFYSMTKKN--VISYNVMIA 381
               +  + +       D++V  ALIDMY KC S   AR +F  +  K+  V+++ V+I 
Sbjct: 391 CHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIG 450

Query: 382 GLGMNGFGEEALKCFAQM--ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439
           G   +G   EAL+ F+QM      +  +       L+AC+  G    G +I   + R+  
Sbjct: 451 GNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRF 510

Query: 440 IEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
               L   +CL+D+ S++G+++ A  + ++M  + N   W +L+
Sbjct: 511 ESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQR-NGVSWTSLM 553



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 134/318 (42%), Gaps = 35/318 (11%)

Query: 17  SLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP- 75
           +LL   +T  H ++ +  L  ND   +   ++ L+   +   +    +A R    +  P 
Sbjct: 382 TLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKS---PKAARAMFDLIPPK 438

Query: 76  --NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV--DNYTYPFVLKACGVLMGLVEG 131
             +      +I G  Q     +AL  +  M +    V  + +T    L AC  L  L  G
Sbjct: 439 DRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFG 498

Query: 132 TEIHGEVVKMGFLCD-VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
            +IH  V++  F    +FV N LI MYSK G +  AR VF+    ++ VSW  ++ G+  
Sbjct: 499 RQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGM 558

Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDG 250
            G   +A ++F EM +       ++ DG       ++   +L+         S + M+D 
Sbjct: 559 HGRGEEALQIFYEMQKV-----GLVPDG-------VTFVVVLYA-------CSHSGMVD- 598

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
              I       + F  +P      ++ M+D  ++ G   EA+ L R M    ++P     
Sbjct: 599 -QGINYFNGMNKDFGVVP--GAEHYACMVDLLSRAGRLDEAMELIRGM---PMKPTPAVW 652

Query: 311 MGAISACAQVGALDLGKW 328
           +  +SAC     ++LG++
Sbjct: 653 VALLSACRVYANVELGEY 670


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 187/540 (34%), Positives = 286/540 (52%), Gaps = 64/540 (11%)

Query: 26  THILQILAQLTTNDLITEPFTLSQLLMSLT-SPNTLNMDQAERLFNQIYQPNTYMHNTMI 84
           T I Q  A++    L  +    S LL  L  S ++L  D A  ++N I  P  +  N MI
Sbjct: 45  TQIKQAHARILVLGLANDGRITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFATNNMI 104

Query: 85  RGYTQSSNPQKALSFYVNMKRKGLLVDN-YTYPFVLKACGVLMGLVEGTEIHGEVVKMGF 143
           R + +   P+ ++S Y +M R  +   N +T  FVL+AC     + EG ++   V+K+GF
Sbjct: 105 RCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLGF 164

Query: 144 LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDE 203
           + DVFV N LI +Y  C                              C  +  A++VFDE
Sbjct: 165 VKDVFVRNALIHLYCTC------------------------------C-RVESAKQVFDE 193

Query: 204 MPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQL 263
           +P                                 +D++SWNSMI G+ ++G +  AQ+L
Sbjct: 194 VPSS-------------------------------RDVVSWNSMIVGFVRLGQISVAQKL 222

Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL 323
           F EMPE++V SW  +I G  Q+G  ++AL  F+E+  Q +RP+   ++  ++A AQ+G L
Sbjct: 223 FVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTL 282

Query: 324 DLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383
           + GK IH      R  M   + TAL+DMY KCG +DE+R +F  M +K+  S+NVMI GL
Sbjct: 283 EYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGL 342

Query: 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443
             +G G+EAL  F +  T+G    ++ F+GVL ACS +GL +EG   F+ M    GIEP+
Sbjct: 343 ATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPE 402

Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLV 503
           +EHY C+VDLLSRAG +  A+ ++  MP  P+  LW ++L +C+ H  + L E +   L+
Sbjct: 403 MEHYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLI 462

Query: 504 ELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           ++     G YV L+ I+A    WE   ++R++M +R   K  G S+IE +G +  FV+G+
Sbjct: 463 QMDPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGD 522


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 180/531 (33%), Positives = 299/531 (56%), Gaps = 17/531 (3%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           +A R+F+++   ++   NTMI GY Q    + ++  +++M   G + D  +    ++ACG
Sbjct: 275 EARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDMLSITSTIRACG 333

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
               L  G  +H  ++  GF CD    N LI MY+KCG +  A+ VF+ ++ KD V+WN 
Sbjct: 334 QSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNS 393

Query: 184 VLRGFVECGEMGKAREVFDEMP---QKDAISWSIMIDGYRKKKGDISSARILFEHMPI-- 238
           ++ G+ + G   +  E F  M    + D++++ +++  +  +  DI+  R +  H  +  
Sbjct: 394 LINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIF-SQLADINQGRGI--HCDVIK 450

Query: 239 ----KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
                +LI  NS++D YAK G++    ++F+ M   ++ SW+ +I       +      +
Sbjct: 451 FGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQM 510

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
             EM  +G+ PD  +V+G +  C+ +     GK IH ++ +S    ++ +  ALI+MY K
Sbjct: 511 INEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSK 570

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CGSL+   ++F  M +K+V+++  +I+  GM G G++ALK F  ME  G+  D + F+  
Sbjct: 571 CGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAF 630

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           + ACSHSG+  EG R F  MK    +EP++EHY+C+VDLL+R+G L QA   + SMPMKP
Sbjct: 631 IFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKP 690

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           + +LWG LL ACR   N  +A+ V + ++EL +DD G YVL+SNIYA  G W+    +R 
Sbjct: 691 DASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRN 750

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSG----EIFDVQSEELELVIQSFVK 581
            M+ + +KKE G S IEI   +  F +G    E +D   + LE +++   K
Sbjct: 751 SMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLMAK 801



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/440 (29%), Positives = 231/440 (52%), Gaps = 25/440 (5%)

Query: 60  LNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVL 119
           +++D A  +F ++   ++   N++I GY  +   + AL  Y   +  G++ D +T   VL
Sbjct: 170 VDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVL 229

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
            ACG LM + EG  +HG + K+G   DV + NGL+ MY K   +  AR VF    +KD V
Sbjct: 230 LACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSV 289

Query: 180 SWNLVLRGFVECGEMGKAREVFDEM-----PQKDAISWSIMIDGYRKKKGDISSARILFE 234
           +WN ++ G+ + G    + ++F +M     P   +I+ +I   G   + GD+   + + +
Sbjct: 290 TWNTMICGYAQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACG---QSGDLQVGKFVHK 346

Query: 235 HMPIK----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
           ++       D ++ N +ID YAK GDL+AAQ++F+    ++  +W+ +I+GY Q G  KE
Sbjct: 347 YLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKE 406

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
            L  F+ M+    +PD ++ +  +S  +Q+  ++ G+ IH  + +     ++I+  +L+D
Sbjct: 407 GLESFK-MMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLD 465

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           +Y KCG +D+  ++F  M+  ++IS+N +IA            +   +M TEG+  D+  
Sbjct: 466 VYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEAT 525

Query: 411 FLGVLIACS-----HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
            LG+L  CS       G    GY IF+S     G E  +   + L+++ S+ G LE  + 
Sbjct: 526 VLGILPMCSLLAVRRQGKEIHGY-IFKS-----GFESNVPIGNALIEMYSKCGSLENCIK 579

Query: 466 IVESMPMKPNLALWGTLLLA 485
           + + M  K ++  W  L+ A
Sbjct: 580 VFKYMKEK-DVVTWTALISA 598



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 135/459 (29%), Positives = 235/459 (51%), Gaps = 26/459 (5%)

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           N Y+ N++IR  T +    +AL +Y  M+ K L  D +T+P V+ +C  ++ L  G  +H
Sbjct: 85  NVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVH 144

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
              ++MGF  D+++ N LI MYS+   +  AR VFE    +D VSWN ++ G+   G   
Sbjct: 145 EHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWE 204

Query: 196 KAREVFDE------MPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-DLISWNSMI 248
            A +++ +      +P    +S  ++  G      +  +   + E + I  D+I  N ++
Sbjct: 205 DALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLL 264

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
             Y K   L  A+++F++M  ++  +W+ MI GYAQ G  + ++ LF +M+  G  PD++
Sbjct: 265 SMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDML 323

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           S+   I AC Q G L +GK++H ++  S    D +    LIDMY KCG L  A+ +F + 
Sbjct: 324 SITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTT 383

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
             K+ +++N +I G   +G+ +E L+ F  M+ E  P D + F  VL+    S LA    
Sbjct: 384 KCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMERKP-DSVTF--VLLLSIFSQLAD--- 437

Query: 429 RIFQSMKRHC-----GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
            I Q    HC     G E +L   + L+D+ ++ GE++  L +   M    ++  W T++
Sbjct: 438 -INQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAH-DIISWNTVI 495

Query: 484 LACRNHQNVTLA-----EVVVEGLVELKADDCGLYVLLS 517
            +  +  + T+      E+  EGL+  +A   G+  + S
Sbjct: 496 ASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCS 534



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/403 (26%), Positives = 186/403 (46%), Gaps = 25/403 (6%)

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG-SEIKDLVSWNLVLRGFVECG 192
           +H  ++  G    V     LI  Y++      + SVF   S   ++  WN ++R     G
Sbjct: 41  VHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNG 100

Query: 193 EMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEH-MPI---KDLISW 244
              +A   + EM +K    DA ++  +I+   +   D+    I+ EH M +    DL   
Sbjct: 101 LFTQALGYYTEMREKKLQPDAFTFPSVINSCARIL-DLELGCIVHEHAMEMGFESDLYIG 159

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           N++ID Y++  DL  A+ +F EM  R+  SW+ +I GY  +G  ++AL ++ +    G+ 
Sbjct: 160 NALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMV 219

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           PD  ++   + AC  + A+  G  +H  +++  I  D+I+   L+ MY K   L EARR+
Sbjct: 220 PDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRV 279

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F  M  K+ +++N MI G    G  E ++K F  M  +G   D L     + AC  SG  
Sbjct: 280 FSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDL 338

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
             G  + + +    G E      + L+D+ ++ G+L  A  + ++   K ++  W +L+ 
Sbjct: 339 QVGKFVHKYLIGS-GFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVT-WNSLI- 395

Query: 485 ACRNHQNVTLAEVVVEGLVELK------ADDCGLYVLLSNIYA 521
                   T +    EGL   K        D   +VLL +I++
Sbjct: 396 -----NGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFS 433



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 9/247 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           MD   ++F+ +   +    NT+I       +          M+ +GL+ D  T   +L  
Sbjct: 473 MDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPM 532

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C +L    +G EIHG + K GF  +V + N LI MYSKCG +     VF+  + KD+V+W
Sbjct: 533 CSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTW 592

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR---KKKGDISSARILFEHMPI 238
             ++  F   GE  KA + F +M     +  S+    +       G +      F+ M  
Sbjct: 593 TALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKT 652

Query: 239 K-----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS-WSIMIDGYAQHGNPKEAL 292
                  +  +  ++D  A+ G L  A++    MP +   S W  ++      GN   A 
Sbjct: 653 DYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQ 712

Query: 293 YLFREML 299
            + +++L
Sbjct: 713 RVSKKIL 719


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 152/337 (45%), Positives = 234/337 (69%)

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           N+++D Y K  D+ +AQ++FN + E++V SW+ M+ G A+ G  +E+L LFR+M    + 
Sbjct: 50  NAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIE 109

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           PD I+++G +SACAQ GALD GK+IH+ + +  I  D++++TAL+DMY KCGS+D A ++
Sbjct: 110 PDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQV 169

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F  M  +NV ++N MI GL M+G GE+A+  F QME + +  DD+ F+ +L ACSH+GL 
Sbjct: 170 FRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLV 229

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            EG  +FQ+MK    IEP++EHY C+VDLL RA +++ AL  +E+MP+K N  LW TLL 
Sbjct: 230 DEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLG 289

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           ACR+  +  LAE +   ++EL+ D CG YV+LSN+YA    W+HAL++RK M+ + I+K 
Sbjct: 290 ACRSGGHFDLAEKIXRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKT 349

Query: 545 TGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
            G S IE++G I +FV+G+   +Q+E++  +I+   +
Sbjct: 350 PGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTR 386



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 128/239 (53%), Gaps = 5/239 (2%)

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           +RPD ++++  + ACAQ+G L+ GK +H + K   +  ++ V  A++DMY KC  ++ A+
Sbjct: 7   LRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQ 66

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
            +F  + +K+V+S+  M++GL  +G+ +E+L  F +M+   I  D++  +GVL AC+ +G
Sbjct: 67  EVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTG 126

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
              +G  I   + +   I   L   + LVD+ ++ G ++ AL +   M ++ N+  W  +
Sbjct: 127 ALDQGKYIHLLIDKF-EINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNAM 184

Query: 483 L--LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
           +  LA   H    ++        +L  DD     LL    + AG+ +  L + + M+ +
Sbjct: 185 IGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCAC-SHAGLVDEGLAMFQAMKNK 242



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 143/301 (47%), Gaps = 11/301 (3%)

Query: 104 KRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHM 163
           K   L  D  T   ++ AC  L  L  G  +H    ++G   ++ V N ++ MY KC  +
Sbjct: 3   KLDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDI 62

Query: 164 GCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGY 219
             A+ VF     KD++SW  +L G  + G   ++  +F +M     + D I+   ++   
Sbjct: 63  ESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSAC 122

Query: 220 RKKKGDISSAR---ILFEHMPIK-DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
             + G +   +   +L +   I  DL+   +++D YAK G +  A Q+F  M  RNVF+W
Sbjct: 123 -AQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTW 181

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK- 334
           + MI G A HG+ ++A+ LF +M    + PD ++ +  + AC+  G +D G  +   MK 
Sbjct: 182 NAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKN 241

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNGFGEEAL 393
           + +I   M     ++D+  +   +D+A     +M  K N + +  ++      G  + A 
Sbjct: 242 KFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAE 301

Query: 394 K 394
           K
Sbjct: 302 K 302



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 73/144 (50%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A+ +FN+I + +     +M+ G  +S   Q++L+ +  M+   +  D  T   VL 
Sbjct: 61  DIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLS 120

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC     L +G  IH  + K    CD+ +   L+ MY+KCG +  A  VF    ++++ +
Sbjct: 121 ACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFT 180

Query: 181 WNLVLRGFVECGEMGKAREVFDEM 204
           WN ++ G    G    A  +FD+M
Sbjct: 181 WNAMIGGLAMHGHGEDAISLFDQM 204


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 190/557 (34%), Positives = 306/557 (54%), Gaps = 10/557 (1%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           +I   + TN   +  F ++ + MSL +     +D A ++F ++   +     T++ GY Q
Sbjct: 166 EIHGLIITNGFESNLFVMTAV-MSLYA-KCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQ 223

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
           + + ++AL   + M+  G   D+ T   +L A   +  L  G  IHG   + GF   V V
Sbjct: 224 NGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNV 283

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA 209
            N L+ MY KCG    AR VF+G   K +VSWN ++ G  + GE  +A   F +M  +  
Sbjct: 284 TNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGE 343

Query: 210 ISWSIMIDGYR---KKKGDISSARI---LFEHMPIKDLIS-WNSMIDGYAKIGDLVAAQQ 262
           +   + + G        GD+        L + + +   +S  NS+I  Y+K   +  A  
Sbjct: 344 VPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAAS 403

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +FN + + NV +W+ MI GYAQ+G  KEAL LF  M  QG++ D  +++G I+A A    
Sbjct: 404 IFNNLEKTNV-TWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSV 462

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
               KWIH    R+ +  ++ V TAL+DMY KCG++  AR++F  M +++VI++N MI G
Sbjct: 463 NRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDG 522

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
            G +G G+E L  F +M+   +  +D+ FL V+ ACSHSG   EG  +F+SM+    +EP
Sbjct: 523 YGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEP 582

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
            ++HYS +VDLL RAG+L+ A N ++ MP+KP +++ G +L AC+ H+NV L E   + L
Sbjct: 583 TMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKL 642

Query: 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
            +L  D+ G +VLL+NIYA   MW+   ++R  M  + + K  G S +E+   I  F SG
Sbjct: 643 FKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYSG 702

Query: 563 EIFDVQSEELELVIQSF 579
                +S+++   +++ 
Sbjct: 703 STNHPESKKIYAFLETL 719



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 134/482 (27%), Positives = 248/482 (51%), Gaps = 12/482 (2%)

Query: 9   FSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERL 68
           +S ++P V LL+   +   + QIL  +  N    E    ++++ SL      N  +A R+
Sbjct: 44  YSHRHPSVVLLENCTSKKELYQILPFIIKNGFYNEHLFQTKVI-SLFCKFGSN-SEAARV 101

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           F  +      +++ M++GY ++S+   AL F++ M    + +    Y  +L+ CG  + L
Sbjct: 102 FEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDL 161

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
            +G EIHG ++  GF  ++FV+  ++ +Y+KC  +  A  +FE  + KDLVSW  ++ G+
Sbjct: 162 KKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGY 221

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI------LFEHMPIKDLI 242
            + G   +A ++  +M +      S+ +        D+ + RI             + L+
Sbjct: 222 AQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLV 281

Query: 243 S-WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
           +  N+++D Y K G    A+ +F  M  + V SW+ MIDG AQ+G  +EA   F +ML +
Sbjct: 282 NVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDE 341

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
           G  P  +++MG + ACA +G L+ G ++H  + + ++  ++ V  +LI MY KC  +D A
Sbjct: 342 GEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIA 401

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
             IF ++ K NV ++N MI G   NG  +EAL  F  M+++GI  D    +GV+ A +  
Sbjct: 402 ASIFNNLEKTNV-TWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADF 460

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
            +  +   I     R C ++  +   + LVD+ ++ G ++ A  + + M  + ++  W  
Sbjct: 461 SVNRQAKWIHGLAVRAC-MDNNVFVSTALVDMYAKCGAIKTARKLFDMMQER-HVITWNA 518

Query: 482 LL 483
           ++
Sbjct: 519 MI 520



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 139/305 (45%), Gaps = 21/305 (6%)

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           +I  + K G    A ++F  +  +    + IM+ GYA++ +  +AL  F  M+C  VR  
Sbjct: 85  VISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLV 144

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
           V      +  C +   L  G+ IH  +  +    ++ V TA++ +Y KC  +D A ++F 
Sbjct: 145 VGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFE 204

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS-----HS 421
            M  K+++S+  ++AG   NG  + AL+   QM+  G   D +  + +L A +       
Sbjct: 205 RMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRI 264

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           G +  GY  F+S     G E  +   + L+D+  + G    A  + + M  K  ++ W T
Sbjct: 265 GRSIHGY-AFRS-----GFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVS-WNT 317

Query: 482 LLLACRNHQN-----VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
           ++  C  +        T  +++ EG V  +    G+ +  +N+    G  E    + K++
Sbjct: 318 MIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANL----GDLERGWFVHKLL 373

Query: 537 RKRKI 541
            K K+
Sbjct: 374 DKLKL 378


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 189/547 (34%), Positives = 298/547 (54%), Gaps = 55/547 (10%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRK-GLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVV 139
           N+++  Y Q  +  +A+  +  M    G+  D  +   VL AC  +     G ++HG  +
Sbjct: 218 NSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYAL 277

Query: 140 KMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKARE 199
           + G   DVFV N ++ MY+KCG M  A  VFE  ++KD+VSWN ++ G+ + G    A  
Sbjct: 278 RSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALG 337

Query: 200 VFDEMPQK----DAISWSIMIDGYRKK-----------------------------KGDI 226
           +F+++ ++    + ++WS +I GY ++                              G  
Sbjct: 338 LFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCA 397

Query: 227 SSARILF----------------EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-- 268
           S+  +L                 E+ P  DL+  N++ID Y+K     AA+ +F+ +P  
Sbjct: 398 SAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPK 457

Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG--VRPDVISVMGAISACAQVGALDLG 326
           +R+V +W+++I G AQHG   EAL LF +ML     V P+  ++  A+ ACA++GAL  G
Sbjct: 458 DRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFG 517

Query: 327 KWIHVFMKRSRITMDMI-VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
           + IH ++ R+R    M+ V   LIDMY K G +D AR +F +M ++N +S+  ++ G GM
Sbjct: 518 RQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGM 577

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           +G GEEAL+ F +M+   +  D + F+ VL ACSHSG+  +G   F  M +  G+ P  E
Sbjct: 578 HGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAE 637

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
           HY+C+VDLLSRAG L++A+ ++  MPMKP  A+W  LL ACR + NV L E     L+EL
Sbjct: 638 HYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLEL 697

Query: 506 KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIF 565
           ++ + G Y LLSNIYA+A  W+   RIR +M+   IKK  G S ++       F +G+  
Sbjct: 698 ESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWS 757

Query: 566 DVQSEEL 572
              S+++
Sbjct: 758 HPMSQQI 764



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 160/531 (30%), Positives = 253/531 (47%), Gaps = 68/531 (12%)

Query: 17  SLLQISKTTTHILQILA-------QLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLF 69
           S   ++ T  H  + LA       QL    L  +P  +  + ++  SP    +    RL 
Sbjct: 46  STTDLTSTLFHQCKSLASAELTHQQLLVQGLPHDPTHIISMYLTFNSPAKA-LSVLRRLH 104

Query: 70  NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV 129
              +    +  N +IR        +  L  Y  M+R G   D+YT+PFVLKACG +    
Sbjct: 105 PSSH--TVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFR 162

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE---IKDLVSWNLVLR 186
            G  +H  V   GF  +VFV NGL+ MY +CG    AR VF+      + DLVSWN ++ 
Sbjct: 163 CGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVA 222

Query: 187 GFVECGEMGKAREVFDEMPQ-----KDAIS-------------WS--IMIDGYR------ 220
            +++ G+  +A ++F+ M +      DA+S             WS    + GY       
Sbjct: 223 AYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLF 282

Query: 221 -------------KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
                         K G +  A  +FE M +KD++SWN+M+ GY++IG    A  LF ++
Sbjct: 283 EDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKI 342

Query: 268 PER----NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL 323
            E     NV +WS +I GYAQ G   EAL +FR+ML  G  P+V++++  +S CA  G L
Sbjct: 343 REEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTL 402

Query: 324 DLGKWIHVFMKRSRITM-------DMIVQTALIDMYMKCGSLDEARRIFYSMTKKN--VI 374
             GK  H    +  + +       D++V  ALIDMY KC S   AR +F  +  K+  V+
Sbjct: 403 LHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVV 462

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQM--ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
           ++ V+I G   +G   EAL+ F+QM      +  +       L+AC+  G    G +I  
Sbjct: 463 TWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHA 522

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
            + R+      L   +CL+D+ S++G+++ A  + ++M  + N   W +L+
Sbjct: 523 YVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQR-NGVSWTSLM 572


>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
 gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 197/587 (33%), Positives = 317/587 (54%), Gaps = 15/587 (2%)

Query: 1   MKTLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL 60
           M+TL+  K      L  LL   K    + QI A + T  L       + L+++ +     
Sbjct: 1   MRTLSWPK-----RLKHLLLACKDEAPVTQIHALIITTGLFFANSNFNGLVIA-SYARIG 54

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            +  A  LF+++ Q      N MI  Y++  +  + L+ Y  M  +G   D+ T+   +K
Sbjct: 55  GITSARHLFDKLPQRGVDAWNAMIVAYSRRYHLTEVLNLYHQMVNEGGKPDSSTFTVAIK 114

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           A   L  L  G  I    V  G+ CDVFV + ++ +Y KCG +  A+ VF+    +D+V 
Sbjct: 115 ASSSLKDLEAGERIWRRAVDFGYGCDVFVGSSVLNLYVKCGKIDEAKLVFDKMVKRDVVC 174

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI--------L 232
           W  ++ G V+ G + +A ++F  M ++      +++ G  +   ++   ++        +
Sbjct: 175 WATMITGLVQNGNVLEAVDMFRRMRKEGIEGDGVLMLGLVQACANLGELKLGLSVHGHAV 234

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
              M + D+I   S++D YAKIGDL  A ++F +MP +N  SW  +I G+AQ+G  + AL
Sbjct: 235 RREMLMDDVILQTSLVDMYAKIGDLELASRVFEQMPRKNAVSWGALISGFAQNGFAEYAL 294

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            L  EM     +PD   ++ A+ AC+QVG L LGK IH ++ R R+  ++++ TALIDMY
Sbjct: 295 DLLVEMQSLEFKPDTAVLVSALLACSQVGHLKLGKSIHGYIVR-RLGFELVLGTALIDMY 353

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCGSL  A  IF  +  ++VI +N MIA  G++G G+E L  F +M+   I  D   F 
Sbjct: 354 AKCGSLSCAHAIFDRVDSRDVILWNTMIASYGIHGDGKEVLSLFLKMKEANISPDHATFA 413

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            +L A SHSG    G   F +M   C I P  +HY+C+VDL SRAG +E+A  ++ESM  
Sbjct: 414 SLLSALSHSGQVDVGQYWFNAMVNECKIPPSEKHYACMVDLFSRAGRVEEAYQLIESMNT 473

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           +P LA+W  LL  C N++N+   EV  + +++L  DD G+Y L+SN ++ A MW+    +
Sbjct: 474 EPGLAIWVALLSGCHNYRNLLFGEVAAKKILDLNPDDLGIYALVSNFFSLARMWDRVSIL 533

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSF 579
           RK+M++  +KK  G S +E++G  + F+  +    Q EE+  ++ S 
Sbjct: 534 RKIMKETGMKKVPGYSAVEVNGKHEAFLVEDKNHHQYEEILQMLDSL 580


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 184/509 (36%), Positives = 285/509 (55%), Gaps = 12/509 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
            + A +LF+++ + +    N +I  Y Q   P+KAL  +  MK  G   D+ T   V+ +
Sbjct: 349 FEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISS 408

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L+ L  G EIH E+V+ GF  D FV + L+ MY KCG +  A+ VFE  + K++VSW
Sbjct: 409 CARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSW 468

Query: 182 NLVLRGFVECGEMGKAREVFDEM------PQKDAISWSIMIDGYRK---KKGDISSARIL 232
           N ++ G+   G+     E+F  M      P    +S SI++   R    + G      I+
Sbjct: 469 NSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLS-SILMACSRSVNLQLGKFIHGYII 527

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
              +   D+   +S+ID Y K G++ +A+ +F  MP+ NV SW++MI GY + G+  EAL
Sbjct: 528 RNRVE-ADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEAL 586

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            +F +M   GV+PD I+    + AC+Q+  L+ GK IH F+  S++ ++ +V  AL+DMY
Sbjct: 587 VIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMY 646

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCG++DEA  IF  + +++ +S+  MIA  G +G   EALK F +M+      D + FL
Sbjct: 647 AKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFL 706

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP- 471
            +L ACSH+GL  EG   F  M    G +P +EHYSCL+DLL R G L +A  I++  P 
Sbjct: 707 AILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPD 766

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           ++ ++ L  TL  AC  H+ + L E +   L+E   DD   Y++LSN+YA    W+   +
Sbjct: 767 IREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRK 826

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
           +R  +++  +KK  G S IE+   I  FV
Sbjct: 827 VRLKIKELGLKKNPGCSWIEVGKRIHPFV 855



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 128/391 (32%), Positives = 217/391 (55%), Gaps = 19/391 (4%)

Query: 111 DNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF 170
           D +TYP VLKAC  L  +  G  +H  V+K GF  DV V++  +GMY+KC     A  +F
Sbjct: 297 DAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLF 356

Query: 171 EGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRK----K 222
           +    +D+ SWN V+  + + G+  KA E+F+EM     + D+++ + +I    +    +
Sbjct: 357 DEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLE 416

Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
           +G      ++     +   +S ++++D Y K G L  A+++F ++  +NV SW+ MI GY
Sbjct: 417 RGKEIHMELVRSGFALDGFVS-SALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGY 475

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
           +  G+ K  + LFR M  +G+RP + ++   + AC++   L LGK+IH ++ R+R+  D+
Sbjct: 476 SLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADI 535

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
            V ++LID+Y KCG++  A  +F +M K NV+S+NVMI+G    G   EAL  F  M   
Sbjct: 536 FVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKA 595

Query: 403 GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE----HYSCLVDLLSRAG 458
           G+  D + F  VL ACS   +  +G  I   +     IE KLE        L+D+ ++ G
Sbjct: 596 GVKPDAITFTSVLPACSQLAVLEKGKEIHNFI-----IESKLEINEVVMGALLDMYAKCG 650

Query: 459 ELEQALNIVESMPMKPNLALWGTLLLACRNH 489
            +++AL+I   +P + +   W +++ A  +H
Sbjct: 651 AVDEALHIFNQLPER-DFVSWTSMIAAYGSH 680



 Score =  174 bits (442), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 116/364 (31%), Positives = 193/364 (53%), Gaps = 15/364 (4%)

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK-DLVSWNLVLRGFV 189
           G  IH ++V +G   ++ +   LI +Y  C     A+ VF+  E   D+  WN ++    
Sbjct: 214 GKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACT 273

Query: 190 ECGEMGKAREVFDEM---P--QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK----- 239
           +     +  EVF  +   P  + DA ++  ++       G +   +++  H+ IK     
Sbjct: 274 KNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKAC-SGLGRVGYGKMVHTHV-IKSGFAM 331

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           D++  +S +  YAK      A +LF+EMPER+V SW+ +I  Y Q G P++AL LF EM 
Sbjct: 332 DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMK 391

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
             G +PD +++   IS+CA++  L+ GK IH+ + RS   +D  V +AL+DMY KCG L+
Sbjct: 392 VSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLE 451

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
            A+ +F  + +KNV+S+N MIAG  + G  +  ++ F +M+ EGI         +L+ACS
Sbjct: 452 MAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACS 511

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
            S     G  I   + R+  +E  +   S L+DL  + G +  A N+ ++MP K N+  W
Sbjct: 512 RSVNLQLGKFIHGYIIRN-RVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP-KTNVVSW 569

Query: 480 GTLL 483
             ++
Sbjct: 570 NVMI 573



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 134/304 (44%), Gaps = 26/304 (8%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N+  AE +F  + + N    N MI GY +  +  +AL  + +M++ G+  D  T+  VL 
Sbjct: 550 NIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLP 609

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L +G EIH  +++     +  V+  L+ MY+KCG +  A  +F     +D VS
Sbjct: 610 ACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVS 669

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKD 240
           W  ++  +   G+  +A ++F++M Q DA             K D    ++ F  + I  
Sbjct: 670 WTSMIAAYGSHGQAFEALKLFEKMQQSDA-------------KPD----KVTF--LAILS 710

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
             S   ++D      + + A+  F    E     +S +ID   + G  +EA  + +    
Sbjct: 711 ACSHAGLVDEGCYYFNQMIAEYGFKPAVEH----YSCLIDLLGRVGRLREAYEILQRT-- 764

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
             +R DV  +    SAC     LDLG+ I   +   +   D      L +MY      DE
Sbjct: 765 PDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIE-KDPDDPSTYIILSNMYASVKKWDE 823

Query: 361 ARRI 364
            R++
Sbjct: 824 VRKV 827


>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
          Length = 421

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 168/413 (40%), Positives = 262/413 (63%), Gaps = 3/413 (0%)

Query: 176 KDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEH 235
           K++V W  ++ G++   ++  AR  FD  P++D + W+ MI GY  + G++  AR LF+ 
Sbjct: 4   KNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGY-IEMGNMLEARSLFDQ 62

Query: 236 MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
           MP +D++SWN++++GYA IGD+ A +++F++MPERNVFSW+ +I GYAQ+G   E L  F
Sbjct: 63  MPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSF 122

Query: 296 REMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHVFMKR-SRITMDMIVQTALIDMYM 353
           + M+ +G V P+  ++   +SACA++GA D GKW+H + +      +D+ V+ ALIDMY 
Sbjct: 123 KRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYG 182

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCG+++ A  +F  + ++++IS+N MI GL  +G G EAL  F +M+  GI  D + F+G
Sbjct: 183 KCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVG 242

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           VL AC H GL  +G   F SM     I P++EH  C+VDLLSRAG L QA+  +  MP+K
Sbjct: 243 VLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPVK 302

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
            +  +W TLL A + ++ V + EV +E L++L+  +   +V+LSNIY DAG ++ A R++
Sbjct: 303 ADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGDAGRFDDAARLK 362

Query: 534 KMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586
             MR    KKE G S IE D  + +F S      ++EEL+ +++      I R
Sbjct: 363 VAMRDTGFKKEAGVSWIETDDGLVKFYSSGEKHPRTEELQRILRELKSFNILR 415



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 42/222 (18%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D+ + N +I  Y + G+M  ARS+F+    +D++SWN VL G+   G+M     VFD+MP
Sbjct: 36  DIVLWNTMISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMP 95

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-----------------------DLI 242
           +++  SW+ +I GY  + G +S     F+ M  +                       D  
Sbjct: 96  ERNVFSWNGLIKGY-AQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFG 154

Query: 243 SW------------------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQ 284
            W                  N++ID Y K G +  A ++F  +  R++ SW+ MI+G A 
Sbjct: 155 KWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAA 214

Query: 285 HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326
           HG+  EAL LF EM   G+ PD ++ +G + AC  +G ++ G
Sbjct: 215 HGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDG 256



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 2/149 (1%)

Query: 58  NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDN-YTYP 116
           N  +M+  ER+F+ + + N +  N +I+GY Q+    + L  +  M  +G +V N  T  
Sbjct: 80  NIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMT 139

Query: 117 FVLKACGVLMGLVEGTEIHGEVVKMGF-LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI 175
            VL AC  L     G  +H     +G+   DV V N LI MY KCG +  A  VF+G + 
Sbjct: 140 LVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKR 199

Query: 176 KDLVSWNLVLRGFVECGEMGKAREVFDEM 204
           +DL+SWN ++ G    G   +A  +F EM
Sbjct: 200 RDLISWNTMINGLAAHGHGTEALNLFHEM 228


>gi|357123975|ref|XP_003563682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Brachypodium distachyon]
          Length = 527

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 182/514 (35%), Positives = 282/514 (54%), Gaps = 40/514 (7%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N +IR   +  +  + ++ Y +++ +GL+ D++TYPFVL+A GVL   VEG + H   +K
Sbjct: 15  NLLIRTLARRGSFARVMAVYYDLRGRGLVADSFTYPFVLRAIGVLKLSVEGRKAHAAAMK 74

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
            GF  D +  + L+ MY+  G    AR +F+    + LV WN+++R +V CG    A  +
Sbjct: 75  TGFWWDAYTASSLMDMYTLLGRADVARKLFDEMPHRALVVWNMMIRCYVRCGRYTAAIAL 134

Query: 201 FDEM------PQKDAISWSI--------------------------------MIDGYRKK 222
            +EM      P K  +  S+                                ++D Y  K
Sbjct: 135 AEEMERSGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAYMDGVFGFSLPVANALLDMY-MK 193

Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
            G +  A  LFE MP +++ISW  ++ GYA  G L  A+ LF +  E+++  W+ MI+  
Sbjct: 194 NGCLEEAVKLFEQMPSRNIISWTILVSGYAFAGQLDKARVLFYQCSEKDLIMWTAMINAC 253

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
            QHG  +EAL LFREM  Q V PD  +++  ++ CA +GALD G+WIH F    ++ +D 
Sbjct: 254 VQHGCFEEALSLFREMQMQRVEPDRFTIVTLLTCCANLGALDQGEWIHQFAVDRKMKVDA 313

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
           ++ TALIDMY KCG + ++  +F  M  ++  ++  +I GL  NG    AL+ F  ME  
Sbjct: 314 VLGTALIDMYAKCGHVKKSMEVFEQMQGRDTTAWTSIICGLATNGQAGRALELFEDMERS 373

Query: 403 GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
            +  D + F+GVL AC H GL  EG + F +MK    I P++EHYSCLV+LL RAG L++
Sbjct: 374 KVKPDSITFIGVLSACCHGGLVDEGRKQFHAMKDVYRIPPRIEHYSCLVNLLGRAGLLDE 433

Query: 463 ALNIVESMPM-KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521
           A  ++  + + K  + L+G LL AC+   NV ++E + + + E       + +L+SN+YA
Sbjct: 434 AEKLIRDIQINKDAMPLFGALLTACKAQGNVEMSERLTKRIGEQGYQIPDVNLLMSNVYA 493

Query: 522 DAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGN 555
            A  WE A+R+R  M    IKK  G S+IE+ G+
Sbjct: 494 TASRWEDAIRVRSKMAHPTIKKTAGCSLIEVKGH 527



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 163/380 (42%), Gaps = 52/380 (13%)

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
           D A +LF+++      + N MIR Y +      A++    M+R GL  D  T    +  C
Sbjct: 98  DVARKLFDEMPHRALVVWNMMIRCYVRCGRYTAAIALAEEMERSGLTPDKVTLVTSVTVC 157

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
                L  G  IH  +  + F   + V N L+ MY K G +  A  +FE    ++++SW 
Sbjct: 158 SRAGDLSLGRRIHAYMDGV-FGFSLPVANALLDMYMKNGCLEEAVKLFEQMPSRNIISWT 216

Query: 183 LVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK--- 239
           +++ G+   G++ KAR +F +  +KD I W+ MI+    + G    A  LF  M ++   
Sbjct: 217 ILVSGYAFAGQLDKARVLFYQCSEKDLIMWTAMINAC-VQHGCFEEALSLFREMQMQRVE 275

Query: 240 ------------------------------------DLISWNSMIDGYAKIGDLVAAQQL 263
                                               D +   ++ID YAK G +  + ++
Sbjct: 276 PDRFTIVTLLTCCANLGALDQGEWIHQFAVDRKMKVDAVLGTALIDMYAKCGHVKKSMEV 335

Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL 323
           F +M  R+  +W+ +I G A +G    AL LF +M    V+PD I+ +G +SAC   G +
Sbjct: 336 FEQMQGRDTTAWTSIICGLATNGQAGRALELFEDMERSKVKPDSITFIGVLSACCHGGLV 395

Query: 324 DLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
           D G K  H      RI   +   + L+++  + G LDEA ++            ++ I  
Sbjct: 396 DEGRKQFHAMKDVYRIPPRIEHYSCLVNLLGRAGLLDEAEKLI----------RDIQINK 445

Query: 383 LGMNGFGEEALKCFAQMETE 402
             M  FG     C AQ   E
Sbjct: 446 DAMPLFGALLTACKAQGNVE 465



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 129/300 (43%), Gaps = 22/300 (7%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            +D+A  LF Q  + +  M   MI    Q    ++ALS +  M+ + +  D +T   +L 
Sbjct: 227 QLDKARVLFYQCSEKDLIMWTAMINACVQHGCFEEALSLFREMQMQRVEPDRFTIVTLLT 286

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C  L  L +G  IH   V      D  +   LI MY+KCGH+  +  VFE  + +D  +
Sbjct: 287 CCANLGALDQGEWIHQFAVDRKMKVDAVLGTALIDMYAKCGHVKKSMEVFEQMQGRDTTA 346

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK---KKGDISSARILFEHMP 237
           W  ++ G    G+ G+A E+F++M +      SI   G        G +   R  F  M 
Sbjct: 347 WTSIICGLATNGQAGRALELFEDMERSKVKPDSITFIGVLSACCHGGLVDEGRKQFHAM- 405

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE--RNVFS-------WSIMIDGYAQHGNP 288
            KD+      I+ Y+ + +L+    L +E  +  R++         +  ++      GN 
Sbjct: 406 -KDVYRIPPRIEHYSCLVNLLGRAGLLDEAEKLIRDIQINKDAMPLFGALLTACKAQGNV 464

Query: 289 KEALYLFREMLCQGVR-PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA 347
           + +  L + +  QG + PDV  +M  + A A        +W      RS++    I +TA
Sbjct: 465 EMSERLTKRIGEQGYQIPDVNLLMSNVYATAS-------RWEDAIRVRSKMAHPTIKKTA 517


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 197/581 (33%), Positives = 301/581 (51%), Gaps = 62/581 (10%)

Query: 62  MDQAERLFNQIYQ---PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK---GLLVDNYTY 115
           +D A ++F+++ +    +    N+++  Y Q    + AL     M       L  D  T 
Sbjct: 178 LDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITL 237

Query: 116 PFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI 175
             +L AC  +  L  G ++HG  V+ G + DVFV N L+ MY+KC  M  A  VFEG + 
Sbjct: 238 VNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKK 297

Query: 176 KDLVSWNLVLRGFVECGEMGKAREVFDEMPQKD----AISWSIMIDGYRKKKGDISSARI 231
           KD+VSWN ++ G+ + G    A  +F  M ++D     I+WS +I GY  +KG    A  
Sbjct: 298 KDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGY-AQKGHGFEALD 356

Query: 232 LFEHMPI----------------------------------------------KDLISWN 245
           +F  M +                                               DL+  N
Sbjct: 357 VFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLN 416

Query: 246 SMIDGYAKIGDLVAAQQLFN--EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ-- 301
            +ID YAK      A+ +F+  E  ++NV +W++MI GYAQHG   +AL LF ++  Q  
Sbjct: 417 GLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKT 476

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI-VQTALIDMYMKCGSLDE 360
            ++P+  ++  A+ ACA++G L LG+ +H +  R+    +++ V   LIDMY K G +D 
Sbjct: 477 SLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDA 536

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           AR +F +M  +NV+S+  ++ G GM+G GEEAL  F QM+  G   D + FL VL ACSH
Sbjct: 537 ARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSH 596

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
           SG+  +G   F  M +  GI P  EHY+C+VDLL RAG L +A+ ++++M M+P   +W 
Sbjct: 597 SGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWV 656

Query: 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540
            LL A R H N+ L E     L EL A++ G Y LLSN+YA+A  W+   RIR +M+   
Sbjct: 657 ALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTG 716

Query: 541 IKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
           I+K  G S I+   +   F  G+    +SE++  ++   +K
Sbjct: 717 IRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIK 757



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 159/535 (29%), Positives = 259/535 (48%), Gaps = 75/535 (14%)

Query: 14  PLVSLLQISKTTTHILQILAQLTTNDLITEPFT------LSQLLMSLTSPNTLNMDQAER 67
           PL+SLL+  KT      I A+L    +    FT      +   +    S   +++ Q  R
Sbjct: 32  PLISLLRQCKTL-----INAKLAHQQIFVHGFTEMFSYAVGAYIECGASAEAVSLLQ--R 84

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           L         +  N +IR   +       L FY  M+R G L D+YT+PFVLKACG +  
Sbjct: 85  LIPS--HSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPS 142

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE---GSEIKDLVSWNLV 184
           L  G  +H  V   G   +VF+ N ++ MY +CG +  A  +F+     +I+D+VSWN +
Sbjct: 143 LRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSI 202

Query: 185 LRGFVECGEMGKAREVFDEMP-------QKDAISW---------------SIMIDGYRKK 222
           L  +V+ G+   A  +   M        + DAI+                   + G+  +
Sbjct: 203 LAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVR 262

Query: 223 KG-------------------DISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQL 263
            G                    ++ A  +FE +  KD++SWN+M+ GY++IG   +A  L
Sbjct: 263 NGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSL 322

Query: 264 FNEMPER----NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
           F  M E     +V +WS +I GYAQ G+  EAL +FR+M   G+ P+V+++   +S CA 
Sbjct: 323 FKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCAS 382

Query: 320 VGALDLGKWIHVFMKRSRITM-------DMIVQTALIDMYMKCGSLDEARRIFYSM--TK 370
           VGAL  GK  H ++ ++ + +       D++V   LIDMY KC S   AR IF S+    
Sbjct: 383 VGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKD 442

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQM--ETEGIPKDDLIFLGVLIACSHSGLATEGY 428
           KNV+++ VMI G   +G   +ALK FAQ+  +   +  +       L+AC+  G    G 
Sbjct: 443 KNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGR 502

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
           ++     R+      L   +CL+D+ S++G+++ A  + ++M ++ N+  W +L+
Sbjct: 503 QLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLR-NVVSWTSLM 556


>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
          Length = 493

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 178/476 (37%), Positives = 276/476 (57%), Gaps = 12/476 (2%)

Query: 108 LLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCAR 167
           + +DNY+    + A   +  L  G++ H   +K+    D FV+N LI MYS C +   AR
Sbjct: 1   MTLDNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASAR 60

Query: 168 SVFEGSE--IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISW-SIMIDGYR 220
            V + +     D+VSWN ++ G++  G   KA + F +M ++    D ++  ++++   R
Sbjct: 61  LVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACAR 120

Query: 221 K---KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSI 277
               K G +  A ++     I   I  +S++  YAK G +  A+++FN MPERNV  W+ 
Sbjct: 121 TGAMKVGSLCHALVVLNGFEINCYIG-SSLVSMYAKCGMVEEARRVFNRMPERNVVCWTS 179

Query: 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337
           MI G  Q G  KEA+ LFR+M   GV+ D  ++   +S+C Q+GALDLG+++H +     
Sbjct: 180 MIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHG 239

Query: 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFA 397
           +  ++ V+ +LIDMY KCG +++A +IF+ +TK++V ++ VMI G  MNG   EAL  FA
Sbjct: 240 LGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFA 299

Query: 398 QMETEG-IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456
           QME E  +  +++IFLGVL ACSH GL  +GY  F  M +   + P++EHY C+VDLL R
Sbjct: 300 QMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGR 359

Query: 457 AGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLL 516
           A  L +A   ++ MP+ P++ +W +LL ACR    V LAE   E + +L+   CG +VLL
Sbjct: 360 AKLLAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPKRCGGHVLL 419

Query: 517 SNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           SN+YA    W     +R  M   +  K+ G S IE+DG I EF +G+    ++E +
Sbjct: 420 SNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVDGCIHEFFAGDESHFETEAI 475



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 160/313 (51%), Gaps = 22/313 (7%)

Query: 40  LITEPFTLSQLLMSLTSPN-----TLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQ 94
           L ++ F L+ L+   +S N      L +D A R     +  +    NT+I GY +   P 
Sbjct: 36  LASDSFVLNALINMYSSCNYPASARLVLDSAPR-----WASDVVSWNTIIAGYIRGGMPN 90

Query: 95  KALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLI 154
           KAL  +  M ++ + +D  T   VL AC     +  G+  H  VV  GF  + ++ + L+
Sbjct: 91  KALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLV 150

Query: 155 GMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAI 210
            MY+KCG +  AR VF     +++V W  ++ G  + G   +A ++F +M     + D  
Sbjct: 151 SMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDA 210

Query: 211 SWSIMIDGYRKKKGDISSARILFE----HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNE 266
           + + ++     + G +   R L      H   K+L   NS+ID Y+K GD+  A Q+F+ 
Sbjct: 211 TIATVVSSC-GQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHG 269

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDL 325
           + +R+VF+W++MI G+A +G   EAL LF +M  +  V P+ +  +G ++AC+  G ++ 
Sbjct: 270 LTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQ 329

Query: 326 GKWIHVFMKRSRI 338
           G   H F + S++
Sbjct: 330 G--YHHFHRMSKV 340


>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 555

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 179/499 (35%), Positives = 280/499 (56%), Gaps = 56/499 (11%)

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           VLK+C     L    +IH ++V  GF    +++N L+ +Y   G +G A+ VFE      
Sbjct: 33  VLKSCVSFRNL---AKIHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFEDITAPS 89

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMP-------------------------QKDAISW 212
              WN +++G        K+ E+F  M                          + + I  
Sbjct: 90  TTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHG 149

Query: 213 SIMIDGYRKK------------------KGDISSARILFEHMPIKDLISWNSMIDGYAKI 254
            ++++GY                       D+  AR LF+ MP  +++ WNS++ GY + 
Sbjct: 150 RVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKRARYLFDEMPDSNVVGWNSLLAGYVRR 209

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
           GD   A+++F+EMPERNV +W+IM+ G+AQ+G  K AL LF +M   GV  D ++++ A+
Sbjct: 210 GDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAAL 269

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIV----QTALIDMYMKCGSLDEARRIFYSMTK 370
           SACA++G L LGKWIH +++R+  +  + V      ALI MY  CG +D A ++F  + +
Sbjct: 270 SACAELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGVMDLAYKVFEEIPQ 329

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEG---IPKDDLIFLGVLIACSHSGLATEG 427
           +N +S++ +I G    G G EA++ F  M   G   +  D++ F+G L ACSH+GL ++G
Sbjct: 330 RNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDG 389

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
            R+FQSM +  G+ P++EHY C+VDLLSRAG L +AL+++ESMPMKPN A+WG LL  CR
Sbjct: 390 IRLFQSMHKTFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCR 449

Query: 488 NHQNVTLAEVVVEGL-VELKADD--CGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
            H+N  +   V + L  E+  ++   G ++LL+N+YA  G W+    +R+ M    +KK 
Sbjct: 450 LHKNDEIVSHVAKHLSFEIHPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKP 509

Query: 545 TGRSVIEIDGNIKEFVSGE 563
           +GRS IEI+G +  F+ GE
Sbjct: 510 SGRSWIEINGVLCSFMVGE 528



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/424 (29%), Positives = 211/424 (49%), Gaps = 62/424 (14%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           + S+L+   +  ++ +I AQ+  +    + + L+ LL    S  +L    A+++F  I  
Sbjct: 30  IFSVLKSCVSFRNLAKIHAQIVVSGFSQKNYILNHLLSLYISFGSLG--SAQKVFEDITA 87

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           P+T + N +I+G+T+S   +K++  +  M   G+  + +TY F+L AC       EG +I
Sbjct: 88  PSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQI 147

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMG-----CARSVFEGSEIKDLVSWNLVLRGFV 189
           HG V+  G+  +++V   LI +Y+  G  G      AR +F+     ++V WN +L G+V
Sbjct: 148 HGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKRARYLFDEMPDSNVVGWNSLLAGYV 207

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM------------- 236
             G+   AR+VFDEMP+++  +W+IM+ G+  + G    A  LF+ M             
Sbjct: 208 RRGDFDGARKVFDEMPERNVRTWTIMVAGF-AQNGQCKLALSLFDQMRRAGVELDQVALV 266

Query: 237 -------PIKDLI-----------SW------------NSMIDGYAKIGDLVAAQQLFNE 266
                   + DL            +W            N++I  YA  G +  A ++F E
Sbjct: 267 AALSACAELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGVMDLAYKVFEE 326

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG---VRPDVISVMGAISACAQVGAL 323
           +P+RN  SWS +I G+A+ G   EA+ +F+ MLC G   VRPD I+ +GA++AC+  G +
Sbjct: 327 IPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLI 386

Query: 324 DLGKWIHVFMKRSRITMDMIVQT----ALIDMYMKCGSLDEARRIFYSMT-KKNVISYNV 378
             G  I +F    + T  +I Q      ++D+  + G L EA  +  SM  K N   +  
Sbjct: 387 SDG--IRLFQSMHK-TFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGA 443

Query: 379 MIAG 382
           +++G
Sbjct: 444 LLSG 447


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 184/537 (34%), Positives = 287/537 (53%), Gaps = 69/537 (12%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A ++F+ + + +T + NTM+ G  ++S   +A+  + +M + G+  D+ T   VL     
Sbjct: 160 ARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAE 219

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L  L  G  I    +K+GF    +V+ GL  +YSKCG                       
Sbjct: 220 LQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCG----------------------- 256

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARIL------------ 232
                   E+  AR +F ++ Q D +S++ MI GY       SS R+             
Sbjct: 257 --------EIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNS 308

Query: 233 ------------FEHMPIKDLI--------------SWNSMIDGYAKIGDLVAAQQLFNE 266
                       F H+ +   I                 ++   Y+++ ++ +A+ LF+E
Sbjct: 309 SSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDE 368

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326
             E+++ SW+ MI GYAQ+G  ++A+ LF+EM    VRP+ ++V   +SACAQ+GAL LG
Sbjct: 369 SSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLG 428

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
           KW+H  + R     ++ V TALIDMY KCGS+ EA+R+F  M +KN +++N MI+G G++
Sbjct: 429 KWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLH 488

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
           G+G EAL  F +M    +    + FL VL ACSH+GL  EG  IF+SM    G EP  EH
Sbjct: 489 GYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEH 548

Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506
           Y+C+VDLL RAG L++AL+ +  MP++P   +WG LL AC  H++  LA +  + L EL 
Sbjct: 549 YACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELD 608

Query: 507 ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
             + G YVLLSNIY+    +  A  +R ++++RK+ K  G ++IE+   +  F SG+
Sbjct: 609 PQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGD 665



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 124/483 (25%), Positives = 238/483 (49%), Gaps = 17/483 (3%)

Query: 10  SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLF 69
           S +N  ++L+    T   + Q  AQ+  N L  +  T+++L   L+    +  DQA  LF
Sbjct: 8   STRNLFLTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAI--DQASLLF 65

Query: 70  NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL-VDNYTYPFVLKACGVLMGL 128
           + I  P+ +++N +IR ++ +++P  A+S Y ++++   L  DN+TY FV+     L   
Sbjct: 66  STIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLG 125

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
           +         +  GF  D+FV + ++  Y K   +  AR VF+G   +D V WN ++ G 
Sbjct: 126 LLLHAHS---IVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGL 182

Query: 189 VECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
           V+     +A  +F +M +     D+ + + ++ G  + +       I    M +    S 
Sbjct: 183 VKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKV-GFHSH 241

Query: 245 NSMIDG----YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
             +I G    Y+K G++  A+ LF ++ + ++ S++ MI GY  +   + ++ LF+E+L 
Sbjct: 242 AYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLV 301

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
            G + +  S++G I      G L L + IH F  +S +  +  V TAL  +Y +   ++ 
Sbjct: 302 SGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIES 361

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           AR +F   ++K++ S+N MI+G   NG  E+A+  F +M+   +  + +    +L AC+ 
Sbjct: 362 ARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQ 421

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
            G  + G  +   + R    E  +   + L+D+ ++ G + +A  +   MP K N   W 
Sbjct: 422 LGALSLGKWVHDLINRE-SFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEK-NAVTWN 479

Query: 481 TLL 483
            ++
Sbjct: 480 AMI 482



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 23/252 (9%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ A  LF++  + +    N MI GY Q+   +KA+S +  M++  +  +  T   +L A
Sbjct: 359 IESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSA 418

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G  +H  + +  F  ++FV   LI MY+KCG +  A+ +F     K+ V+W
Sbjct: 419 CAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTW 478

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
           N ++ G+   G   +A  +F+EM               R     ++   +L+        
Sbjct: 479 NAMISGYGLHGYGHEALNLFNEMLHS------------RVSPTGVTFLSVLYA------- 519

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
            S   ++    +I   +     F  +PE     ++ M+D   + GN  +AL   R+M  +
Sbjct: 520 CSHAGLVREGDEIFRSMVHDHGFEPLPEH----YACMVDLLGRAGNLDKALDFIRKMPVE 575

Query: 302 GVRPDVISVMGA 313
              P   +++GA
Sbjct: 576 PGPPVWGALLGA 587


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 184/509 (36%), Positives = 285/509 (55%), Gaps = 12/509 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
            + A +LF+++ + +    N +I  Y Q   P+KAL  +  MK  G   D+ T   V+ +
Sbjct: 157 FEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISS 216

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L+ L  G EIH E+V+ GF  D FV + L+ MY KCG +  A+ VFE  + K++VSW
Sbjct: 217 CARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSW 276

Query: 182 NLVLRGFVECGEMGKAREVFDEM------PQKDAISWSIMIDGYRK---KKGDISSARIL 232
           N ++ G+   G+     E+F  M      P    +S SI++   R    + G      I+
Sbjct: 277 NSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLS-SILMACSRSVNLQLGKFIHGYII 335

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
              +   D+   +S+ID Y K G++ +A+ +F  MP+ NV SW++MI GY + G+  EAL
Sbjct: 336 RNRVE-ADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEAL 394

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            +F +M   GV+PD I+    + AC+Q+  L+ GK IH F+  S++ ++ +V  AL+DMY
Sbjct: 395 VIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMY 454

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCG++DEA  IF  + +++ +S+  MIA  G +G   EALK F +M+      D + FL
Sbjct: 455 AKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFL 514

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP- 471
            +L ACSH+GL  EG   F  M    G +P +EHYSCL+DLL R G L +A  I++  P 
Sbjct: 515 AILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPD 574

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           ++ ++ L  TL  AC  H+ + L E +   L+E   DD   Y++LSN+YA    W+   +
Sbjct: 575 IREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRK 634

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
           +R  +++  +KK  G S IE+   I  FV
Sbjct: 635 VRLKIKELGLKKNPGCSWIEVGKRIHPFV 663



 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 128/391 (32%), Positives = 217/391 (55%), Gaps = 19/391 (4%)

Query: 111 DNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF 170
           D +TYP VLKAC  L  +  G  +H  V+K GF  DV V++  +GMY+KC     A  +F
Sbjct: 105 DAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLF 164

Query: 171 EGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRK----K 222
           +    +D+ SWN V+  + + G+  KA E+F+EM     + D+++ + +I    +    +
Sbjct: 165 DEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLE 224

Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
           +G      ++     +   +S ++++D Y K G L  A+++F ++  +NV SW+ MI GY
Sbjct: 225 RGKEIHMELVRSGFALDGFVS-SALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGY 283

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
           +  G+ K  + LFR M  +G+RP + ++   + AC++   L LGK+IH ++ R+R+  D+
Sbjct: 284 SLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADI 343

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
            V ++LID+Y KCG++  A  +F +M K NV+S+NVMI+G    G   EAL  F  M   
Sbjct: 344 FVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKA 403

Query: 403 GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE----HYSCLVDLLSRAG 458
           G+  D + F  VL ACS   +  +G  I   +     IE KLE        L+D+ ++ G
Sbjct: 404 GVKPDAITFTSVLPACSQLAVLEKGKEIHNFI-----IESKLEINEVVMGALLDMYAKCG 458

Query: 459 ELEQALNIVESMPMKPNLALWGTLLLACRNH 489
            +++AL+I   +P + +   W +++ A  +H
Sbjct: 459 AVDEALHIFNQLPER-DFVSWTSMIAAYGSH 488



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/377 (31%), Positives = 199/377 (52%), Gaps = 15/377 (3%)

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK- 176
           +LK C     L +G  IH ++V +G   ++ +   LI +Y  C     A+ VF+  E   
Sbjct: 9   LLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPL 68

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEM---P--QKDAISWSIMIDGYRKKKGDISSARI 231
           D+  WN ++    +     +  EVF  +   P  + DA ++  ++       G +   ++
Sbjct: 69  DITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKAC-SGLGRVGYGKM 127

Query: 232 LFEHMPIK-----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
           +  H+ IK     D++  +S +  YAK      A +LF+EMPER+V SW+ +I  Y Q G
Sbjct: 128 VHTHV-IKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDG 186

Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
            P++AL LF EM   G +PD +++   IS+CA++  L+ GK IH+ + RS   +D  V +
Sbjct: 187 QPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSS 246

Query: 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK 406
           AL+DMY KCG L+ A+ +F  + +KNV+S+N MIAG  + G  +  ++ F +M+ EGI  
Sbjct: 247 ALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRP 306

Query: 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466
                  +L+ACS S     G  I   + R+  +E  +   S L+DL  + G +  A N+
Sbjct: 307 TLTTLSSILMACSRSVNLQLGKFIHGYIIRN-RVEADIFVNSSLIDLYFKCGNIGSAENV 365

Query: 467 VESMPMKPNLALWGTLL 483
            ++MP K N+  W  ++
Sbjct: 366 FQNMP-KTNVVSWNVMI 381



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 132/309 (42%), Gaps = 36/309 (11%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N+  AE +F  + + N    N MI GY +  +  +AL  + +M++ G+  D  T+  VL 
Sbjct: 358 NIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLP 417

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L +G EIH  +++     +  V+  L+ MY+KCG +  A  +F     +D VS
Sbjct: 418 ACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVS 477

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKD 240
           W  ++  +   G+  +A ++F++M Q DA                              D
Sbjct: 478 WTSMIAAYGSHGQAFEALKLFEKMQQSDAKP----------------------------D 509

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS-----WSIMIDGYAQHGNPKEALYLF 295
            +++ +++   +  G +      FN+M     F      +S +ID   + G  +EA  + 
Sbjct: 510 KVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEIL 569

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
           +      +R DV  +    SAC     LDLG+ I   +   +   D      L +MY   
Sbjct: 570 QRT--PDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIE-KDPDDPSTYIILSNMYASV 626

Query: 356 GSLDEARRI 364
              DE R++
Sbjct: 627 KKWDEVRKV 635


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 172/508 (33%), Positives = 289/508 (56%), Gaps = 18/508 (3%)

Query: 70  NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV 129
           +  ++ N +  N +I G+  +  P++   FY  M+ +G++ D +T+P  +KAC   + ++
Sbjct: 17  DPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKAC---LDVL 73

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
           E  +IHG + K G   DVF+ + L+  Y K G M  A+  FE   I+D+V WN ++ G+ 
Sbjct: 74  EIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYA 133

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK---KGDISSARILFEHMPIK-----DL 241
           + G+     E F  M  +  +     + G        GD+++ RI+     +K      +
Sbjct: 134 QIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRII-HGFAMKMGYDSGV 192

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
              NS+ID Y K   +  A ++F  M E+++FSW+ +   + Q G+    L L   ML  
Sbjct: 193 AVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGA 252

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFM------KRSRITMDMIVQTALIDMYMKC 355
           G++PD+++V   + AC+ + AL  G+ IH +M      K  +   D++++ A+IDMY KC
Sbjct: 253 GIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKC 312

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
           GS+ +A  +F  M  K+V S+N+MI G GM+G+G EAL+ F++M    +  D++ F+GVL
Sbjct: 313 GSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVL 372

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
            ACSH+G  ++G      MK    + P +EHY+C++D+L RAG+L++A  +  +MP++ N
Sbjct: 373 SACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEAN 432

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535
             +W  LL ACR H++  LAEV  + + EL+ + CG YVL+SN+Y   G +E  L +R  
Sbjct: 433 PVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHT 492

Query: 536 MRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           MR++ ++K  G S IE+   +  FVS +
Sbjct: 493 MRQQNVRKTPGCSWIELKNGVHVFVSAD 520



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 182/427 (42%), Gaps = 58/427 (13%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           M+ A+  F ++   +  + N M+ GY Q    +  L  +  M  + ++   +T   +L  
Sbjct: 107 MEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSV 166

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
             V+  L  G  IHG  +KMG+   V V N LI MY KC  +  A  +FE    KD+ SW
Sbjct: 167 FAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSW 226

Query: 182 NLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGY---------RKKKGDISS 228
           N +     +CG+      + D M     Q D ++ + ++            R+  G +  
Sbjct: 227 NSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIV 286

Query: 229 ARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNP 288
           + +  +   I D++  N++ID YAK G +  A  +F  M  ++V SW+IMI GY  HG  
Sbjct: 287 SGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYG 346

Query: 289 KEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ-TA 347
            EAL +F  M    ++PD ++ +G +SAC+  G +  G+     MK        I   T 
Sbjct: 347 NEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTC 406

Query: 348 LIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407
           +IDM  + G LDEA  +  +M                                   I  +
Sbjct: 407 VIDMLGRAGQLDEAYELALTMP----------------------------------IEAN 432

Query: 408 DLIFLGVLIAC---SHSGLA-TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
            +++  +L AC    H+ LA     R+F+    HCG       Y  + ++    G  E+ 
Sbjct: 433 PVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCG------SYVLMSNVYGAVGRYEEV 486

Query: 464 LNIVESM 470
           L +  +M
Sbjct: 487 LEVRHTM 493



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 159/376 (42%), Gaps = 75/376 (19%)

Query: 156 MYSKCGHMGCARSVF-EGSEIKDLVSWNLVLRGFVECGEMGKAREVFDE------MPQK- 207
           MYSKC  M  A S+F + +   ++ ++N ++ GF+  G   +  E + +      MP K 
Sbjct: 1   MYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKF 60

Query: 208 -----------------------------DAISWSIMIDGYRKKKGDISSARILFEHMPI 238
                                        D    S +++ Y  K G +  A++ FE +PI
Sbjct: 61  TFPCAIKACLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYL-KFGLMEHAQVAFEELPI 119

Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
           +D++ WN+M++GYA+IG          EM                        L  FR M
Sbjct: 120 RDVVLWNAMVNGYAQIGQF--------EM-----------------------VLETFRRM 148

Query: 299 LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
             + V P   +V G +S  A +G L+ G+ IH F  +      + V  +LIDMY KC  +
Sbjct: 149 NDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCI 208

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
           ++A  IF  M +K++ S+N + +     G  +  L+   +M   GI  D +    VL AC
Sbjct: 209 EDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPAC 268

Query: 419 SH-----SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           SH      G    GY I   + +       +   + ++D+ ++ G +  A  + E M  K
Sbjct: 269 SHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNK 328

Query: 474 PNLALWGTLLLACRNH 489
            ++A W  +++    H
Sbjct: 329 -DVASWNIMIMGYGMH 343


>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
 gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
          Length = 485

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 197/549 (35%), Positives = 289/549 (52%), Gaps = 67/549 (12%)

Query: 4   LAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMD 63
           ++ A   ++  ++ LL   +T T + +I A    + L      LS  +    S N   M 
Sbjct: 1   MSRACREIERNILRLLHGRETRTQLREIHAHFLRHGLNQLNQILSHFVSICGSLN--KMA 58

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            A R+F Q   P   + N MI+GY+ +   +++   + +MK +G+  D YT   +LKAC 
Sbjct: 59  YANRIFKQTQNPTIILFNAMIKGYSLNGPFEESFRLFSSMKNRGIWPDEYTLAPLLKACS 118

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            L  L  G  +H EV+ +GF     +  G+I +YS CG                      
Sbjct: 119 SLGVLQLGKCMHKEVLVVGFEGFSAIRIGVIELYSSCG---------------------- 156

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243
                     M  A +VFDEM Q+D                                +I 
Sbjct: 157 ---------VMEDAEKVFDEMYQRD--------------------------------VIV 175

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
           WN MI G+ K GD+     LF +M +R+V SW+IMI   AQ     EAL LF +ML  G 
Sbjct: 176 WNLMIHGFCKRGDVDMGLCLFRQMRKRSVVSWNIMISCLAQSRRDSEALGLFHDMLDWGF 235

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI-VQTALIDMYMKCGSLDEAR 362
           +PD  +V+  +  CA++G++D+GKWIH + K S +  D + V  AL+D Y K G  + AR
Sbjct: 236 KPDEATVVTVLPICARLGSVDVGKWIHSYAKSSGLYRDFVAVGNALVDFYNKSGMFETAR 295

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
           R+F  M +KNVIS+N +I+GL +NG GE  ++   +M  EG+  +D  F+GVL  C+H+G
Sbjct: 296 RVFDEMPRKNVISWNTLISGLALNGNGELGVELLEEMMNEGVRPNDATFVGVLSCCAHAG 355

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP-MKPNLALWGT 481
           L   G  +  SM  H  IEPKLEHY C+VDLL R+G + +A +++  MP   PN ALWG+
Sbjct: 356 LFERGRELLASMVEHHQIEPKLEHYGCMVDLLGRSGCVREAYDLIRIMPGGAPNAALWGS 415

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           LL ACR H +V LA + V+ L++L+  + G YVLLSN+YA+   W+    +R MMR++ +
Sbjct: 416 LLSACRTHGDVELAHLAVKELIDLEPWNSGNYVLLSNMYAEEERWDKVANVRGMMREKNV 475

Query: 542 KKETGRSVI 550
           KK  G+SVI
Sbjct: 476 KKTPGQSVI 484


>gi|224066751|ref|XP_002302197.1| predicted protein [Populus trichocarpa]
 gi|222843923|gb|EEE81470.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 173/420 (41%), Positives = 259/420 (61%), Gaps = 9/420 (2%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           +V   N +I  Y K G M  A  +F+    ++ VSW  ++ GF   G+M  AR  F+E+P
Sbjct: 22  NVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMIDGFARSGDMVAARRTFNEVP 81

Query: 206 --QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQL 263
              K+ ++W++MIDGY   KG++ +AR+LFE MP ++   W+SMI GY KIG++  A+ +
Sbjct: 82  FELKNVVTWTVMIDGY-ASKGEMEAARLLFEDMPQRNFFVWSSMISGYCKIGNVKEARAI 140

Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL 323
           F+ +P RN+ +W+ +I GY+Q+G  +EAL  F +M  +G  PD ++V+G +SACAQ+  L
Sbjct: 141 FDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVLSACAQLSLL 200

Query: 324 DLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383
           D+GK +H  +    + ++  V  AL+DMY KCG L  AR IF  MT KN   +N MI+G 
Sbjct: 201 DVGKDVHKMICAKGMKLNEFVVNALVDMYAKCGDLTGARLIFERMTNKNNACWNSMISGF 260

Query: 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443
            ++G  +EAL+ F +ME      D++ FL VL AC H G    G  IF  M+R+ G+   
Sbjct: 261 AVHGKTKEALEFFGRMEESNEKPDEITFLSVLSACVHGGFVEVGLEIFSKMERY-GLSAS 319

Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLV 503
           ++HY CLVDLL RAG ++ A ++++SMPMKPN  +WG  L ACR H +  + E VVE + 
Sbjct: 320 IKHYGCLVDLLGRAGRIQDAYHLIKSMPMKPNDTVWGAFLGACRIHMDNDMVEQVVEDVC 379

Query: 504 ELKAD-DCG---LYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEF 559
              +  D G    Y LL NIYA +G WE A R+  +M  R ++K +GRS + ++ N ++F
Sbjct: 380 TSDSSVDSGNDPHYALLLNIYAGSGSWEKAGRVSMVMADRGLQKTSGRSSLMLE-NTEQF 438



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 90/264 (34%), Positives = 146/264 (55%), Gaps = 12/264 (4%)

Query: 222 KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           K GDI  +R LFE+MP +++++WN+MI GY K GD+ +A  LF++M  RN  SW  MIDG
Sbjct: 4   KCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMIDG 63

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
           +A+ G+   A   F E+  +    +V++    I   A  G ++  + +   M +     +
Sbjct: 64  FARSGDMVAARRTFNEVPFE--LKNVVTWTVMIDGYASKGEMEAARLLFEDMPQR----N 117

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
             V +++I  Y K G++ EAR IF  +  +N++++N +I G   NGF EEAL  F +M+ 
Sbjct: 118 FFVWSSMISGYCKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQN 177

Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY--SCLVDLLSRAGE 459
           EG   D++  +GVL AC+   L   G  + + +   C    KL  +  + LVD+ ++ G+
Sbjct: 178 EGYEPDEVTVVGVLSACAQLSLLDVGKDVHKMI---CAKGMKLNEFVVNALVDMYAKCGD 234

Query: 460 LEQALNIVESMPMKPNLALWGTLL 483
           L  A  I E M  K N A W +++
Sbjct: 235 LTGARLIFERMTNKNN-ACWNSMI 257



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 1/207 (0%)

Query: 2   KTLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLN 61
           +T     F LKN +   + I    +      A+L   D+    F +   ++S       N
Sbjct: 75  RTFNEVPFELKNVVTWTVMIDGYASKGEMEAARLLFEDMPQRNFFVWSSMIS-GYCKIGN 133

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           + +A  +F+++   N    N++I GY+Q+   ++AL  +  M+ +G   D  T   VL A
Sbjct: 134 VKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVLSA 193

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G ++H  +   G   + FVVN L+ MY+KCG +  AR +FE    K+   W
Sbjct: 194 CAQLSLLDVGKDVHKMICAKGMKLNEFVVNALVDMYAKCGDLTGARLIFERMTNKNNACW 253

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKD 208
           N ++ GF   G+  +A E F  M + +
Sbjct: 254 NSMISGFAVHGKTKEALEFFGRMEESN 280



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 86/185 (46%), Gaps = 21/185 (11%)

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           MY KCG + ++R++F  M ++NV+++N MI+G G NG  + A   F +M T    ++ + 
Sbjct: 1   MYAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMST----RNAVS 56

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
           ++ ++   + SG      R F  +         +  ++ ++D  +  GE+E A  + E M
Sbjct: 57  WIEMIDGFARSGDMVAARRTFNEVPFEL---KNVVTWTVMIDGYASKGEMEAARLLFEDM 113

Query: 471 PMKPNLALWGTLLLACRNHQNVTLAEVV-----VEGLVELKADDCGLYVLLSNIYADAGM 525
           P + N  +W +++       NV  A  +     V  LV   +  CG        Y+  G 
Sbjct: 114 PQR-NFFVWSSMISGYCKIGNVKEARAIFDRVPVRNLVNWNSLICG--------YSQNGF 164

Query: 526 WEHAL 530
            E AL
Sbjct: 165 CEEAL 169



 Score = 38.9 bits (89), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 13/105 (12%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  A  +F ++   N    N+MI G+      ++AL F+  M+      D  T+  VL 
Sbjct: 234 DLTGARLIFERMTNKNNACWNSMISGFAVHGKTKEALEFFGRMEESNEKPDEITFLSVLS 293

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGC 165
           AC           +HG  V++G   ++F      G+ +   H GC
Sbjct: 294 AC-----------VHGGFVEVGL--EIFSKMERYGLSASIKHYGC 325


>gi|413943789|gb|AFW76438.1| hypothetical protein ZEAMMB73_890738 [Zea mays]
          Length = 529

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 178/515 (34%), Positives = 284/515 (55%), Gaps = 47/515 (9%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N +IR   +  +  + ++ Y +++ +GL  D+YTYPFVL+A G +   VEG ++H   VK
Sbjct: 15  NVLIRTLARRGSFSRVMAVYYDLRARGLAADSYTYPFVLRAIGTMKLSVEGRKVHAAAVK 74

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
            GF  D +    L+ MY+  G    AR VF+    + LV WN+++R ++ CG    A  +
Sbjct: 75  TGFRWDAYTACSLMEMYTMLGRADSARRVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVAL 134

Query: 201 FDEM------PQKDAISWSI--------------------------------MIDGYRKK 222
             +M      P +  +  ++                                ++D Y  K
Sbjct: 135 AVQMESGGATPDRVTLVTAVTACSRAGDLNLGRRIHSYMDGVFGFSLPVANALLDMY-TK 193

Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
            G +  A  +FE MP +++ISW  ++ GY   G L  A+  F +  ++++  W+ MI+  
Sbjct: 194 NGYLEEAVKMFEQMPERNIISWTILVSGYGIAGQLDKARVFFYQCTQKDLILWTSMINAC 253

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
            QHG+ +EAL LFR+M  Q V PD  +V+  ++ CA +GALD G+WIH + +   + +D 
Sbjct: 254 VQHGSFEEALILFRDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWIHQYAESRNMKIDA 313

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
           ++ TALI+MY KCG +D++ +IF  M  K+  ++  +I GL  NG   +AL+ F +M+  
Sbjct: 314 VLGTALIEMYSKCGHVDKSLQIFGRMQGKDAAAWTAIICGLATNGQASKALELFEEMQRS 373

Query: 403 GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
               D + F+GVL AC H GL  EG R FQ+MK    IEP++EHYSCLV+LL  AG L +
Sbjct: 374 KTKPDGITFIGVLSACCHGGLVDEGQRYFQAMKEVYHIEPRIEHYSCLVNLLGHAGLLYE 433

Query: 463 ALNIVESMPMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG----LYVLLS 517
           A  ++  MP+  + + L+G LL AC+ + NV ++E + + + +   +DC     + VL+S
Sbjct: 434 AEKLITDMPVNNDTMPLFGALLTACKANGNVEMSEWLTKRIAK---EDCSPNPDVNVLMS 490

Query: 518 NIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
           N+YA A  WE A+R+R  M    +KK  G S+IE+
Sbjct: 491 NVYATASRWEEAIRVRSKMTNPAVKKTAGCSMIEV 525



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 156/351 (44%), Gaps = 44/351 (12%)

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
           D A R+F+++ Q    + N M+R Y +      A++  V M+  G   D  T    + AC
Sbjct: 98  DSARRVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVALAVQMESGGATPDRVTLVTAVTAC 157

Query: 123 GVLMGLVEGTEIHGEVVKM-GFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
                L  G  IH  +  + GF   + V N L+ MY+K G++  A  +FE    ++++SW
Sbjct: 158 SRAGDLNLGRRIHSYMDGVFGF--SLPVANALLDMYTKNGYLEEAVKMFEQMPERNIISW 215

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-- 239
            +++ G+   G++ KAR  F +  QKD I W+ MI+    + G    A ILF  M ++  
Sbjct: 216 TILVSGYGIAGQLDKARVFFYQCTQKDLILWTSMINAC-VQHGSFEEALILFRDMQLQRV 274

Query: 240 -------------------------------------DLISWNSMIDGYAKIGDLVAAQQ 262
                                                D +   ++I+ Y+K G +  + Q
Sbjct: 275 EPDKFTVVTLLTCCANIGALDQGEWIHQYAESRNMKIDAVLGTALIEMYSKCGHVDKSLQ 334

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F  M  ++  +W+ +I G A +G   +AL LF EM     +PD I+ +G +SAC   G 
Sbjct: 335 IFGRMQGKDAAAWTAIICGLATNGQASKALELFEEMQRSKTKPDGITFIGVLSACCHGGL 394

Query: 323 LDLGKWIHVFMKR-SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
           +D G+     MK    I   +   + L+++    G L EA ++   M   N
Sbjct: 395 VDEGQRYFQAMKEVYHIEPRIEHYSCLVNLLGHAGLLYEAEKLITDMPVNN 445



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/319 (22%), Positives = 131/319 (41%), Gaps = 37/319 (11%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            +D+A   F Q  Q +  +  +MI    Q  + ++AL  + +M+ + +  D +T   +L 
Sbjct: 227 QLDKARVFFYQCTQKDLILWTSMINACVQHGSFEEALILFRDMQLQRVEPDKFTVVTLLT 286

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C  +  L +G  IH          D  +   LI MYSKCGH+  +  +F   + KD  +
Sbjct: 287 CCANIGALDQGEWIHQYAESRNMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGKDAAA 346

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKD 240
           W  ++ G    G+  KA E+F+EM +              K K                D
Sbjct: 347 WTAIICGLATNGQASKALELFEEMQRS-------------KTK---------------PD 378

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMP-----ERNVFSWSIMIDGYAQHGNPKEALYLF 295
            I++  ++      G +   Q+ F  M      E  +  +S +++     G   EA  L 
Sbjct: 379 GITFIGVLSACCHGGLVDEGQRYFQAMKEVYHIEPRIEHYSCLVNLLGHAGLLYEAEKLI 438

Query: 296 REMLCQGVRPDVISVMGA-ISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
            +M    V  D + + GA ++AC   G +++ +W+   + +   + +  V   + ++Y  
Sbjct: 439 TDM---PVNNDTMPLFGALLTACKANGNVEMSEWLTKRIAKEDCSPNPDVNVLMSNVYAT 495

Query: 355 CGSLDEARRIFYSMTKKNV 373
               +EA R+   MT   V
Sbjct: 496 ASRWEEAIRVRSKMTNPAV 514


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 178/552 (32%), Positives = 305/552 (55%), Gaps = 42/552 (7%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK-GLLVDNYTYPFVLK 120
           +++A ++F  + + N   +N ++ GY Q    ++AL  Y +M+ + G+  D +T+  +L 
Sbjct: 428 VEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLT 487

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C       +G +IH  +++     ++ V   L+ MYS+CG +  A+ +F     ++  S
Sbjct: 488 LCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYS 547

Query: 181 WNLVLRGFVECGEMGKAREVFDEMP----QKDAISWS----------------------- 213
           WN ++ G+ + GE  +A  +F +M     + D  S S                       
Sbjct: 548 WNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIV 607

Query: 214 ------------IMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQ 261
                       +++D Y  K G +  A  +++    KD+I  N M+  +   G    A+
Sbjct: 608 RNTMEEEGILQVVLVDMY-AKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAK 666

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
            LF++M +RN   W+ ++ GYA  G  KE+   F EML   +  DV++++  ++ C+ + 
Sbjct: 667 NLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLP 726

Query: 322 ALDLGKWIH-VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMI 380
           AL+ G  +H + +K+  +   ++++TAL+DMY KCG++ +AR +F +M  KN++S+N MI
Sbjct: 727 ALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMI 786

Query: 381 AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGI 440
           +G   +G  +EAL  + +M  +G+  +++ FL +L ACSH+GL  EG RIF SM+    I
Sbjct: 787 SGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNI 846

Query: 441 EPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVE 500
           E K EHY+C+VDLL RAG LE A   VE MP++P ++ WG LL ACR H+++ +  +  +
Sbjct: 847 EAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQ 906

Query: 501 GLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
            L EL   + G YV++SNIYA AG W+    IR+MM+ + +KK+ G S IEI+  I+ F 
Sbjct: 907 RLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFH 966

Query: 561 SGEIFDVQSEEL 572
           +G     ++EE+
Sbjct: 967 AGSKTHPKTEEI 978



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 148/577 (25%), Positives = 271/577 (46%), Gaps = 52/577 (9%)

Query: 14  PLVSLLQI---SKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLN-MDQAERLF 69
           P  SL+Q    S +      I  Q+ +N    + + ++++LM       L+ +  A +LF
Sbjct: 73  PYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLF 132

Query: 70  NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV 129
            ++ + N    NTMI  Y +  +  + L  Y  M+  G   D +T+P V+KAC  +  + 
Sbjct: 133 EEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMG 192

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
              ++   VVK G  C++FV   L+  Y++ G M  A +  +  E   +V+WN V+ G+V
Sbjct: 193 GVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYV 252

Query: 190 ECGEMGKAREVFDEM------PQKDAISWSIMIDG-YRKKKGDISSARILFEHMPIKDLI 242
           +     +A  +FD M      P     + ++ + G  R + G       L       D  
Sbjct: 253 KILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTF 312

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
             N++ID YAK  D  +  ++F+EM ERN  +W+ +I   AQ G+  +AL LF  M   G
Sbjct: 313 VGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESG 372

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
            + +  ++   + A A +  +  G+ +H  + R+ +  D+I+ +AL+DMY KCG ++EA 
Sbjct: 373 YKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAH 432

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE-GIPKDDLIFLGVLIACSHS 421
           ++F S+ ++N +SYN ++AG    G  EEAL+ +  M++E GI  D   F  +L  C++ 
Sbjct: 433 QVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQ 492

Query: 422 GLATEGYRIFQSMKR------------------HCG------------IEPKLEHYSCLV 451
               +G +I   + R                   CG             E     ++ ++
Sbjct: 493 RNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMI 552

Query: 452 DLLSRAGELEQALNIVESMPM---KPNLALWGTLLLAC----RNHQNVTLAEVVVEGLVE 504
           +   + GE ++AL + + M +   KP+     ++L +C     + +   L   +V   +E
Sbjct: 553 EGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTME 612

Query: 505 LKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
              ++  L V+L ++YA  G  ++A ++     K+ +
Sbjct: 613 ---EEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDV 646



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 110/267 (41%), Gaps = 31/267 (11%)

Query: 314 ISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE---ARRIFYSMTK 370
           I  C    +   GK IH  M  +    D  + T ++ +Y + G LD+   AR++F  M +
Sbjct: 78  IQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPE 137

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE---G 427
           +N+ ++N MI          E L+ + +M   G   D   F  V+ AC    +A E   G
Sbjct: 138 RNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKAC----IAMEDMGG 193

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
            R  QS     G+   L     LVD  +R G ++ A+  ++ +         GT      
Sbjct: 194 VRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIE--------GT------ 239

Query: 488 NHQNVTLAEVVVEGLVELKA--DDCGLY--VLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
              +V     V+ G V++ +  +  G++  +L   +  D   +  ALR+   +R R   K
Sbjct: 240 ---SVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGK 296

Query: 544 ETGRSVIEIDGNIKEFVSGEIFDVQSE 570
           +    +I        FV   + D+ ++
Sbjct: 297 QVHSKLIACGFKGDTFVGNALIDMYAK 323


>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
 gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
          Length = 580

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 190/546 (34%), Positives = 307/546 (56%), Gaps = 51/546 (9%)

Query: 61  NMDQAERLFNQIY-QPNTYMHNTMIRGYTQSSNPQKALSFYVN--MKRKGLLVDNYTYPF 117
           N+D A  LFN     PN +++NT+I  +   S+ +K  SFY+   +   G   D  T  +
Sbjct: 15  NLDLAITLFNHFTPNPNLFIYNTLISAF---SSLKKIESFYLYNVLLSSGECPDKQTLLY 71

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           +L+A   +  +    +IH + +  G     ++ N LI +Y + G +  A  VFE     D
Sbjct: 72  LLQAVNFISQV---KQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPD 128

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEM-------------------PQKDAISWSIMIDG 218
           +VS+N+++ G+ + G   +A  +F EM                    Q   + +   + G
Sbjct: 129 IVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHG 188

Query: 219 Y-RKKKGDISSARIL--------------------FEHMPIKDLISWNSMIDGYAKIGDL 257
           +  ++K  ISS  IL                    F  +  KD++SWN ++ G AK+G+L
Sbjct: 189 WMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGEL 248

Query: 258 VAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISAC 317
             A+  F +MP R++ SW+ ++ GYA  G+      L  +M+ + V PD ++++  +SA 
Sbjct: 249 EQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAA 308

Query: 318 AQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYN 377
            + GALD G+W H ++ R +I +D  + +ALIDMY KCGS++ A R+F  + KK+V  + 
Sbjct: 309 TESGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWT 368

Query: 378 VMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRH 437
            MI GL  +G+G +AL+ F++M+ E +  DD+ F+ VL ACSHSGL  +G ++F SM  +
Sbjct: 369 TMITGLAFHGYGSKALELFSEMQ-EDVSPDDVTFVSVLSACSHSGLVDQGIKVFSSMTDY 427

Query: 438 CGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEV 497
            GIEP +EHY CLVDLL+R+G L +A +I++ MPMKP+ ++WG +L AC+   +V LAE+
Sbjct: 428 -GIEPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVELAEI 486

Query: 498 VVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIK 557
               L+ L  ++ G Y LLSNIYA +G W ++ +IR+ M  R +KK  G S + +DG + 
Sbjct: 487 ASRELLNLDPEEEGGYTLLSNIYAASGRWSYSKKIRETMESRGVKKTAGCSSVVVDGVVH 546

Query: 558 EFVSGE 563
            F+S +
Sbjct: 547 NFISAD 552



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 192/411 (46%), Gaps = 49/411 (11%)

Query: 4   LAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMD 63
           L++ +   K  L+ LLQ     + + QI  Q     L +  + L   L+ +   N L + 
Sbjct: 58  LSSGECPDKQTLLYLLQAVNFISQVKQIHCQAIVTGLFSFGY-LQNTLIKVYLENGL-VR 115

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            A ++F ++  P+    N MI GY +     +A+  +  M   GL  D +T   +L +CG
Sbjct: 116 LAHQVFEKMPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCG 175

Query: 124 VLMGLVEGTEIHG--EVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
            L  +  G  +HG  E  K     ++ + N L+ MY KC  +  A   F   + KD+VSW
Sbjct: 176 QLGNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSW 235

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
           N+++ G  + GE+ +AR  F +MP +D +SW+ ++ GY   +GD +S + L   M ++ +
Sbjct: 236 NMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGY-ACRGDFASVKELIVDMVMEKV 294

Query: 242 I--------------------------SW-------------NSMIDGYAKIGDLVAAQQ 262
           I                           W             +++ID Y K G +  A +
Sbjct: 295 IPDTVTMISLVSAATESGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASR 354

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F E+ +++V  W+ MI G A HG   +AL LF EM  + V PD ++ +  +SAC+  G 
Sbjct: 355 VFKEINKKDVTVWTTMITGLAFHGYGSKALELFSEMQ-EDVSPDDVTFVSVLSACSHSGL 413

Query: 323 LDLGKWIHVFMKRSRITMDMIVQ--TALIDMYMKCGSLDEARRIFYSMTKK 371
           +D G  I VF   +   ++  V+    L+D+  + G L EA+ I   M  K
Sbjct: 414 VDQG--IKVFSSMTDYGIEPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMK 462


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 191/551 (34%), Positives = 314/551 (56%), Gaps = 16/551 (2%)

Query: 41  ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFY 100
           ITE  T++  L+ + S     + +A  LF+     N    NT+I GY++  + +      
Sbjct: 330 ITEEVTVNNSLVDMYSKCGY-LGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELL 388

Query: 101 VNMKRK-GLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSK 159
             M+R+  + V+  T   VL AC     L+   EIHG   + GFL D  V N  +  Y+K
Sbjct: 389 QEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAK 448

Query: 160 CGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM------PQKDAISWS 213
           C  + CA  VF G E K + SWN ++    + G  GK+ ++F  M      P +  I  S
Sbjct: 449 CSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIG-S 507

Query: 214 IMIDGYRKK---KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER 270
           +++   R K    G      +L   + + + I   S++  Y +   ++  + +F++M  +
Sbjct: 508 LLLACARLKFLRCGKEIHGFMLRNGLELDEFIGI-SLMSLYIQCSSMLLGKLIFDKMENK 566

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           ++  W++MI G++Q+  P EAL  FR+ML  G++P  I+V G + AC+QV AL LGK +H
Sbjct: 567 SLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVH 626

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
            F  ++ ++ D  V  ALIDMY KCG +++++ IF  + +K+   +NV+IAG G++G G 
Sbjct: 627 SFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGL 686

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
           +A++ F  M+ +G   D   FLGVLIAC+H+GL TEG +    M+   G++PKLEHY+C+
Sbjct: 687 KAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACV 746

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           VD+L RAG+L +AL +V  MP +P+  +W +LL +CRN+ ++ + E V + L+EL+ +  
Sbjct: 747 VDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKA 806

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570
             YVLLSN+YA  G W+   ++R+ M++  + K+ G S IEI G +  F+   + D    
Sbjct: 807 ENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFL---VSDGSLS 863

Query: 571 ELELVIQSFVK 581
           E + + Q+++K
Sbjct: 864 ESKKIQQTWIK 874



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 123/434 (28%), Positives = 226/434 (52%), Gaps = 15/434 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM---KRKGLLVDNYTYPFV 118
           ++ A ++F  +   N    N+++   +++    +    +  +   + +GL+ D  T   V
Sbjct: 246 VESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTV 305

Query: 119 LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDL 178
           + AC  +  +  G  +HG   K+G   +V V N L+ MYSKCG++G AR++F+ +  K++
Sbjct: 306 IPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNV 365

Query: 179 VSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWS--IMIDGYRKKKGD---ISSARI-- 231
           VSWN ++ G+ + G+     E+  EM +++ +  +   +++      G+   +S   I  
Sbjct: 366 VSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHG 425

Query: 232 -LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
             F H  +KD +  N+ +  YAK   L  A+++F  M  + V SW+ +I  +AQ+G P +
Sbjct: 426 YAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGK 485

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
           +L LF  M+  G+ PD  ++   + ACA++  L  GK IH FM R+ + +D  +  +L+ 
Sbjct: 486 SLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMS 545

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           +Y++C S+   + IF  M  K+++ +NVMI G   N    EAL  F QM + GI   ++ 
Sbjct: 546 LYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIA 605

Query: 411 FLGVLIACSHSGLATEGYRIFQ-SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
             GVL ACS       G  +   ++K H   +  +     L+D+ ++ G +EQ+ NI + 
Sbjct: 606 VTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVT--CALIDMYAKCGCMEQSQNIFDR 663

Query: 470 MPMKPNLALWGTLL 483
           +  K   A+W  ++
Sbjct: 664 VNEKDE-AVWNVII 676



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 113/386 (29%), Positives = 189/386 (48%), Gaps = 13/386 (3%)

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM-KRKGLLVDNYTYPFVLKACGVLM 126
           +F+   + + +++N ++ GY++++  + A+S ++ +     L  DN+T P V KAC  + 
Sbjct: 150 VFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVA 209

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
            +  G  +H   +K G   D FV N LI MY KCG +  A  VFE    ++LVSWN V+ 
Sbjct: 210 DVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMY 269

Query: 187 GFVECGEMGKAREVFDEMPQKDA------ISWSIMIDGYRKKKGDISSARIL----FEHM 236
              E G  G+   VF  +   +       ++  + +       G++    ++    F+  
Sbjct: 270 ACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLG 329

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
             +++   NS++D Y+K G L  A+ LF+    +NV SW+ +I GY++ G+ +    L +
Sbjct: 330 ITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQ 389

Query: 297 EMLC-QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
           EM   + VR + ++V+  + AC+    L   K IH +  R     D +V  A +  Y KC
Sbjct: 390 EMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKC 449

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
            SLD A R+F  M  K V S+N +I     NGF  ++L  F  M   G+  D      +L
Sbjct: 450 SSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLL 509

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIE 441
           +AC+       G  I   M R+ G+E
Sbjct: 510 LACARLKFLRCGKEIHGFMLRN-GLE 534



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 135/529 (25%), Positives = 223/529 (42%), Gaps = 71/529 (13%)

Query: 10  SLKNPLVSLLQISKTTTHILQILAQLTTN-DLITEPFTLSQLLMSLTSPNTLNMDQAERL 68
           S+  P VS     K T H      +   N + +  PFT+ +   SLTS    +    +RL
Sbjct: 3   SVAAPPVSCQHYHKLTFHNRNTWTRNHNNSNNLFPPFTVPK--SSLTSHTKTHSPILQRL 60

Query: 69  FNQIYQPN-----TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            N     N       +H+    G   SS+  K                      +L+ACG
Sbjct: 61  HNLCDSGNLNDALNLLHSHAQNGTVSSSDISKE-----------------AIGILLRACG 103

Query: 124 VLMGLVEGTEIHGEVVKMGFL-CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
               +  G ++H  V     L  DV +   +I MYS CG    +R VF+ ++ KDL  +N
Sbjct: 104 HHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYN 163

Query: 183 LVLRGFVECGEMGKAREVFDE-MPQKDAISWSIMIDGYRKKKGDISSAR-------ILFE 234
            +L G+        A  +F E +   D    +  +    K    ++          +  +
Sbjct: 164 ALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALK 223

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
                D    N++I  Y K G + +A ++F  M  RN+ SW+ ++   +++G   E   +
Sbjct: 224 AGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGV 283

Query: 295 FREMLC---QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           F+ +L    +G+ PDV +++  I ACA VG + +G  +H    +  IT ++ V  +L+DM
Sbjct: 284 FKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDM 343

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME-TEGIPKDDLI 410
           Y KCG L EAR +F     KNV+S+N +I G    G      +   +M+  E +  +++ 
Sbjct: 344 YSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVT 403

Query: 411 FLGVLIACS-----------------HSGLATE--------GYRIFQSM----KRHCGIE 441
            L VL ACS                 H  L  E         Y    S+    +  CG+E
Sbjct: 404 VLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGME 463

Query: 442 PK-LEHYSCLVDLLSRAGELEQALNIVESM---PMKPNLALWGTLLLAC 486
            K +  ++ L+   ++ G   ++L++   M    M P+    G+LLLAC
Sbjct: 464 GKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLAC 512


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 181/539 (33%), Positives = 305/539 (56%), Gaps = 11/539 (2%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           ++ AQ+ T   +++ F +   L+S+      +MD A ++F+ ++  +    N M+ GY +
Sbjct: 179 EVHAQVVTAGFVSD-FRIGTALVSMYVKGG-SMDDARQVFDGLHIRDVSTFNVMVGGYAK 236

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
           S + +KA   +  M++ GL  +  ++  +L  C     L  G  +H + +  G + D+ V
Sbjct: 237 SGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRV 296

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP---- 205
              LI MY+ CG +  AR VF+  +++D+VSW +++ G+ E G +  A  +F  M     
Sbjct: 297 ATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGI 356

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK----DLISWNSMIDGYAKIGDLVAAQ 261
           Q D I++  +++       +++ AR +   + I     DL+   +++  YAK G +  A+
Sbjct: 357 QPDRITYMHIMNAC-AISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDAR 415

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
           Q+F+ MP R+V SWS MI  Y ++G   EA   F  M    + PD ++ +  ++AC  +G
Sbjct: 416 QVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLG 475

Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
           ALD+G  I+    ++ +   + +  ALI M  K GS++ AR IF +M +++VI++N MI 
Sbjct: 476 ALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIG 535

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
           G  ++G   EAL  F +M  E    + + F+GVL ACS +G   EG R F  +    GI 
Sbjct: 536 GYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIV 595

Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEG 501
           P ++ Y C+VDLL RAGEL++A  +++SMP+KP  ++W +LL+ACR H N+ +AE   E 
Sbjct: 596 PTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAER 655

Query: 502 LVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
            + +   D  +YV LS++YA AGMWE+  ++RK+M  R I+KE G + IE+ G +  FV
Sbjct: 656 CLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFV 714



 Score =  224 bits (571), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 135/444 (30%), Positives = 242/444 (54%), Gaps = 13/444 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N+ +A ++F+ +        N +I GY Q  + ++A + +  M  +GL     T+  VL 
Sbjct: 107 NVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLD 166

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC    GL  G E+H +VV  GF+ D  +   L+ MY K G M  AR VF+G  I+D+ +
Sbjct: 167 ACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVST 226

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQ----KDAISWSIMIDGYRKKK----GDISSARIL 232
           +N+++ G+ + G+  KA E+F  M Q     + IS+  ++DG    +    G    A+ +
Sbjct: 227 FNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCM 286

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
              + + D+    S+I  Y   G +  A+++F+ M  R+V SW++MI+GYA++GN ++A 
Sbjct: 287 NAGL-VDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAF 345

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            LF  M  +G++PD I+ M  ++ACA    L+  + IH  +  +    D++V TAL+ MY
Sbjct: 346 GLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMY 405

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCG++ +AR++F +M +++V+S++ MI     NG+G EA + F  M+   I  D + ++
Sbjct: 406 AKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYI 465

Query: 413 GVLIACSHSGLATEGYRIF-QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
            +L AC H G    G  I+ Q++K    +   +   + L+ + ++ G +E+A  I ++M 
Sbjct: 466 NLLNACGHLGALDVGMEIYTQAIK--ADLVSHVPLGNALIIMNAKHGSVERARYIFDTM- 522

Query: 472 MKPNLALWGTLLLACRNHQNVTLA 495
           ++ ++  W  ++     H N   A
Sbjct: 523 VRRDVITWNAMIGGYSLHGNAREA 546



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 202/386 (52%), Gaps = 9/386 (2%)

Query: 107 GLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCA 166
           G  +D+ TY  + + C  L     G ++   +++ G   +++ +N LI +YS CG++  A
Sbjct: 52  GNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEA 111

Query: 167 RSVFEGSEIKDLVSWNLVLRGFVECGEMGKA----REVFDEMPQKDAISWSIMIDGYRKK 222
           R +F+  E K +V+WN ++ G+ + G + +A    R++ DE  +   I++  ++D     
Sbjct: 112 RQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSP 171

Query: 223 KGDISSARILFEHMP---IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMI 279
            G      +  + +    + D     +++  Y K G +  A+Q+F+ +  R+V ++++M+
Sbjct: 172 AGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMV 231

Query: 280 DGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRIT 339
            GYA+ G+ ++A  LF  M   G++P+ IS +  +  C    AL  GK +H     + + 
Sbjct: 232 GGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLV 291

Query: 340 MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
            D+ V T+LI MY  CGS++ ARR+F +M  ++V+S+ VMI G   NG  E+A   FA M
Sbjct: 292 DDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATM 351

Query: 400 ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
           + EGI  D + ++ ++ AC+ S       R   S     G    L   + LV + ++ G 
Sbjct: 352 QEEGIQPDRITYMHIMNACAISANLNHA-REIHSQVDIAGFGTDLLVSTALVHMYAKCGA 410

Query: 460 LEQALNIVESMPMKPNLALWGTLLLA 485
           ++ A  + ++MP + ++  W  ++ A
Sbjct: 411 IKDARQVFDAMPRR-DVVSWSAMIGA 435



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 138/248 (55%), Gaps = 2/248 (0%)

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           N++I  Y+  G++  A+Q+F+ +  + V +W+ +I GYAQ G+ KEA  LFR+M+ +G+ 
Sbjct: 96  NTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLE 155

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           P +I+ +  + AC+    L+ GK +H  +  +    D  + TAL+ MY+K GS+D+AR++
Sbjct: 156 PSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQV 215

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F  +  ++V ++NVM+ G   +G  E+A + F +M+  G+  + + FL +L  C      
Sbjct: 216 FDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEAL 275

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
             G +   +   + G+   +   + L+ + +  G +E A  + ++M ++ ++  W  ++ 
Sbjct: 276 AWG-KAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVR-DVVSWTVMIE 333

Query: 485 ACRNHQNV 492
               + N+
Sbjct: 334 GYAENGNI 341


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 177/515 (34%), Positives = 292/515 (56%), Gaps = 42/515 (8%)

Query: 97  LSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGM 156
           +S + N+  + L + N    F L++C  L  L     IH  +++   + DVF  + LI +
Sbjct: 1   MSGFSNLVLRKLELKNPKLSF-LESCTTLSHL---KIIHAHLIRAHTIFDVFAASCLISI 56

Query: 157 YSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISW 212
                 +  A  VF   +  +L  +N  +RGF    +  K+   + +  +     D +++
Sbjct: 57  SINKNLLDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTY 116

Query: 213 SIMIDGYRKKK----------------------------------GDISSARILFEHMPI 238
             ++    +K                                   GDI SA  +F  +  
Sbjct: 117 PFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISC 176

Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
            D++SW SM+ GY K GD+ +A++LF++MPE+N+ +WS+MI GYA++    +A+ L+  +
Sbjct: 177 LDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLL 236

Query: 299 LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
             +GV  +   ++  I++CA +GAL+LG+  H ++ R+++T+++I+ TAL+DMY +CGS+
Sbjct: 237 QSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSI 296

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
           D+A  +F  +  ++ +S+  +IAG  M+G+ E+AL+ F++ME  G+   ++ F  VL AC
Sbjct: 297 DKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSAC 356

Query: 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
           SH GL   G  +F+SMKR   IEP+LEHY C+VDLL RAG+L +A   V  MPMKPN  +
Sbjct: 357 SHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPI 416

Query: 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
           WG LL ACR H+N  +AE   + L+ELK +  G YVLLSNIYA    WE+   IR+MM++
Sbjct: 417 WGALLGACRIHKNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKE 476

Query: 539 RKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELE 573
           R + K  G ++ E+DG + +F  G+    + +++E
Sbjct: 477 RGVVKPPGYTLFEMDGKVHKFTIGDKTHPEIQQIE 511



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 132/409 (32%), Positives = 208/409 (50%), Gaps = 43/409 (10%)

Query: 3   TLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNM 62
            L   K  LKNP +S L+   T +H+  I A L     I + F  S L+    + N L  
Sbjct: 6   NLVLRKLELKNPKLSFLESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLL-- 63

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
           D A ++F QI  PN +++N+ IRG++ S +P K+  FYV  KR GL+ DN TYPF++KAC
Sbjct: 64  DYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKAC 123

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
                L  G + HG++++ GF  DV+V N L+ MYS  G +  A  VF      D+VSW 
Sbjct: 124 TQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWT 183

Query: 183 LVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK------------------- 223
            ++ G+++ G++  AR++FD+MP+K+ ++WS+MI GY K                     
Sbjct: 184 SMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHA 243

Query: 224 --------------------GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQL 263
                               G+ +   IL   M + +LI   +++D YA+ G +  A  +
Sbjct: 244 NETVMVSVIASCAHLGALELGERAHDYILRNKMTV-NLILGTALVDMYARCGSIDKAIWV 302

Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL 323
           F+++P R+  SW+ +I G+A HG  ++AL  F  M   G+ P  I+    +SAC+  G +
Sbjct: 303 FDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLV 362

Query: 324 DLGKWIHVFMKRS-RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
           + G  +   MKR  RI   +     ++D+  + G L EA +    M  K
Sbjct: 363 ERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMK 411


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 182/520 (35%), Positives = 287/520 (55%), Gaps = 42/520 (8%)

Query: 67   RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
             +F++I + N    N MIR Y  +     AL  + NM   G+  D+YTYP VLKA     
Sbjct: 1081 HIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSE 1140

Query: 127  GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
             L  G +IH  VV++G   +VFV NGLI MY KCG                         
Sbjct: 1141 DLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCG------------------------- 1175

Query: 187  GFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI----KDLI 242
                C  + +A  V DZMP +D +SW+ ++ G   + G    A  + + M +     D  
Sbjct: 1176 ----C--LVEACRVLDZMPCRDVVSWNSLVAGC-ARNGQFDDALEVCKEMELLGLKPDAG 1228

Query: 243  SWNSMIDGYAK--IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
            +  S++       + ++   +++F ++  +++ SW++MI  Y  +  P EA+ +F +M  
Sbjct: 1229 TMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMED 1288

Query: 301  QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
              V PD IS+   + AC  + AL LG+ IH ++ R R+  +++++ ALIDMY KCG L+ 
Sbjct: 1289 HAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEY 1348

Query: 361  ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
            AR +F  M  ++V+S+  MI+  GMNG G +A+  F++M+  G+  D + F+ VL ACSH
Sbjct: 1349 AREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSH 1408

Query: 421  SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
            +GL  EG   F+ M   C I P++EH+ C+VDLL RAG++++A   ++ MPM+PN  +WG
Sbjct: 1409 AGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWG 1468

Query: 481  TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540
             LL ACR + N+ +  +  + L +L  +  G YVLLSNIYA AG WE    +R +M+ + 
Sbjct: 1469 ALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKG 1528

Query: 541  IKKETGRSVIEIDGNIKEFVSGEIFDVQS----EELELVI 576
            IKK  G S  E+D  +  F++G+    QS    EEL++++
Sbjct: 1529 IKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLV 1568



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 144/299 (48%), Gaps = 7/299 (2%)

Query: 247  MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
            ++  YA  G+  + + +F+E+P++NV  +++MI  Y  +    +AL +F+ M   G+ PD
Sbjct: 1066 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 1125

Query: 307  VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
              +    + A +    L +G  IH  + R  + +++ V   LI MY KCG L EA R+  
Sbjct: 1126 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 1185

Query: 367  SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
             M  ++V+S+N ++AG   NG  ++AL+   +ME  G+  D      +L A +++ L   
Sbjct: 1186 ZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNV 1245

Query: 427  GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI---VESMPMKPNLALWGTLL 483
             +     MK        L  ++ ++ +        +A++I   +E   + P+     ++L
Sbjct: 1246 SFVKEMFMKL---ANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVL 1302

Query: 484  LACRNHQNVTLAEVVVEGLVELK-ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
             AC +   + L   + E +V  +   +  L   L ++YA  G  E+A  +   M+ R +
Sbjct: 1303 PACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDV 1361



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 147/343 (42%), Gaps = 79/343 (23%)

Query: 184  VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMP------ 237
            ++R +  CGE    R +FDE+P+K+ + +++MI  Y       S A ++F++M       
Sbjct: 1066 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHL-YSDALLVFKNMAGHGIDP 1124

Query: 238  --------------IKDLISW---------------------NSMIDGYAKIGDLVAAQQ 262
                           +DL  W                     N +I  Y K G LV A +
Sbjct: 1125 DHYTYPCVLKASSGSEDL--WVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACR 1182

Query: 263  LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
            + +ZMP R+V SW+ ++ G A++G   +AL + +EM   G++PD  ++   + A      
Sbjct: 1183 VLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPA------ 1236

Query: 323  LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
                                +  T L ++          + +F  +  K+++S+NVMIA 
Sbjct: 1237 --------------------VTNTCLDNVSF-------VKEMFMKLANKSLVSWNVMIAV 1269

Query: 383  LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
               N    EA+  F QME   +  D +    VL AC        G RI + + R   ++P
Sbjct: 1270 YMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRK-RLQP 1328

Query: 443  KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
             L   + L+D+ ++ G LE A  + + M  + ++  W +++ A
Sbjct: 1329 NLLLENALIDMYAKCGCLEYAREVFDQMKFR-DVVSWTSMISA 1370



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 122/269 (45%), Gaps = 11/269 (4%)

Query: 29   LQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYT 88
            L++  ++    L  +  T++ LL ++T+    N+   + +F ++   +    N MI  Y 
Sbjct: 1212 LEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYM 1271

Query: 89   QSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF 148
             +S P +A+  ++ M+   +  D  +   VL ACG L  L+ G  IH  VV+     ++ 
Sbjct: 1272 NNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLL 1331

Query: 149  VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP--- 205
            + N LI MY+KCG +  AR VF+  + +D+VSW  ++  +   G+   A  +F  M    
Sbjct: 1332 LENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLG 1391

Query: 206  -QKDAISWSIMIDGYRKKKGDISSARILFEHMP-----IKDLISWNSMIDGYAKIGDLVA 259
               D+I++  ++       G +   R  F+ M      +  +  +  M+D   + G +  
Sbjct: 1392 LNPDSIAFVSVLSAC-SHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDE 1450

Query: 260  AQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
            A     +MP E N   W  ++     + N
Sbjct: 1451 AYGFIKQMPMEPNERVWGALLSACRVYSN 1479


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 179/567 (31%), Positives = 305/567 (53%), Gaps = 39/567 (6%)

Query: 41  ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFY 100
           I  P  + +  M +    +  +D A  +F  + + +    N +I   ++S   ++AL   
Sbjct: 220 IKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMV 279

Query: 101 VNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC 160
           V+M  KG+  D+ TY   L AC  L  L  G ++H +V++     D +V + ++ +Y+KC
Sbjct: 280 VDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKC 339

Query: 161 GHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMI 216
           G    A+ VF     ++ VSW +++ GF++ G   ++ E+F++M  +    D  + + +I
Sbjct: 340 GCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLI 399

Query: 217 DG----------------------------------YRKKKGDISSARILFEHMPIKDLI 242
            G                                     K G++ +A ++F  M  +D++
Sbjct: 400 SGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIV 459

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ- 301
           SW  MI  Y+++G++  A++ F++M  RNV +W+ M+  Y QHG  ++ L ++ +ML + 
Sbjct: 460 SWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEK 519

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
            V PD ++ +     CA +GA  LG  I     +  + +D  V  A+I MY KCG + EA
Sbjct: 520 DVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEA 579

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
           R+ F  +++K+++S+N MI G   +G G++A++ F  +  +G   D + ++ VL  CSHS
Sbjct: 580 RKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHS 639

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           GL  EG   F  MKR   I P LEH+SC+VDLL RAG L +A N+++ MPMKP   +WG 
Sbjct: 640 GLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGA 699

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           LL AC+ H N  LAE+  + L +L +   G Y+LL+ +YADAG  + + ++RK+MR + I
Sbjct: 700 LLSACKTHGNNDLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGI 759

Query: 542 KKETGRSVIEIDGNIKEFVSGEIFDVQ 568
           KK  G S +E++  +  F + ++   Q
Sbjct: 760 KKSPGYSWMEVNNRVHVFKAEDVSHPQ 786



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 123/522 (23%), Positives = 226/522 (43%), Gaps = 73/522 (13%)

Query: 39  DLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALS 98
           D ITEP  ++  +M        ++  A  LF ++   +    NT++ GY QS     AL 
Sbjct: 85  DEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALD 144

Query: 99  FYVNMKRKGLLVDN-YTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMY 157
            +V+M++ G  + N +T+  V+K+CG L       ++ G + K     D  V   L+ M 
Sbjct: 145 IFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDML 204

Query: 158 SKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMID 217
            +CG M  A   F   +   ++  N +L G+ +   +  A E+F  MP++D +SW+++I 
Sbjct: 205 VRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVIS 264

Query: 218 ---------------------GYRKKKGDISS-----ARI------------LFEHMPIK 239
                                G R      +S     AR+            +  ++P  
Sbjct: 265 ALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHI 324

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           D    ++M++ YAK G    A+++F+ + +RN  SW+++I G+ Q+G   E++ LF +M 
Sbjct: 325 DPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMR 384

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
            + +  D  ++   IS C     + LG  +H    +S  T  ++V  +LI MY KCG+L 
Sbjct: 385 AELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQ 444

Query: 360 -------------------------------EARRIFYSMTKKNVISYNVMIAGLGMNGF 388
                                          +AR  F  M+ +NVI++N M+     +G 
Sbjct: 445 NAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGA 504

Query: 389 GEEALKCFAQMETE-GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
            E+ LK ++ M TE  +  D + ++ +   C+  G    G +I     +  G+       
Sbjct: 505 EEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVK-VGLILDTSVV 563

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
           + ++ + S+ G + +A    + +  K +L  W  ++     H
Sbjct: 564 NAVITMYSKCGRISEARKAFDFLSRK-DLVSWNAMITGYSQH 604



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 108/450 (24%), Positives = 200/450 (44%), Gaps = 73/450 (16%)

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSV-------- 169
            L++CG    L     +H  ++ +G    VF+ N L+  Y  CG +  AR++        
Sbjct: 31  ALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEP 90

Query: 170 ------------------------FEGSEIKDLVSWNLVLRGFVECGEMGKAREVF---- 201
                                   F     +D+ SWN ++ G+ + G+   A ++F    
Sbjct: 91  NVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMR 150

Query: 202 ---DEMPQK----------DAISW---SIMIDGYRKK-----KGDISSARI--------- 231
              D +P             A+ W   ++ + G   K       D+ +A +         
Sbjct: 151 QTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAM 210

Query: 232 -----LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
                 F  +    +I  NSM+ GYAK   +  A ++F  MPER+V SW+++I   ++ G
Sbjct: 211 DFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSG 270

Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
             +EAL +  +M  +GVRPD  +   +++ACA++ +L+ GK +HV + R+   +D  V +
Sbjct: 271 RVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVAS 330

Query: 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK 406
           A++++Y KCG   EA+R+F S+  +N +S+ V+I G    G   E+++ F QM  E +  
Sbjct: 331 AMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAV 390

Query: 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466
           D      ++  C ++     G ++  S+    G    +   + L+ + ++ G L+ A  I
Sbjct: 391 DQFALATLISGCCNTMDICLGSQL-HSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELI 449

Query: 467 VESMPMKPNLALWGTLLLACRNHQNVTLAE 496
              M  + ++  W  ++ A     N+  A 
Sbjct: 450 FNFMAER-DIVSWTGMITAYSQVGNIAKAR 478


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 180/517 (34%), Positives = 301/517 (58%), Gaps = 9/517 (1%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A  LF+ +   +    N MI G+  +    +AL  +  M+ K + +D+ T   +L  C  
Sbjct: 193 ACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQ 252

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L  ++ G  IH   +K+G   D+FV N LI MY+K G +  A ++F   +++D+VSWN +
Sbjct: 253 LDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSL 312

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAIS---WSIMIDGYRKKKGDISSARILFEHMP---- 237
           L  F +  +   A  V+++M     +      + +     + G+  S+R +   +     
Sbjct: 313 LAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCW 372

Query: 238 -IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
            + D+   N++ID YAK+G + +A+++F  +P ++V SW+ +I GY+Q+G   EA+ ++ 
Sbjct: 373 FLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYS 432

Query: 297 EM-LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
            M    G  P+  + +  ++A +Q+GAL  G   H  + ++ +  D+ V T L+DMY KC
Sbjct: 433 SMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKC 492

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
           G L +A  +FY +  ++ +S+N +I+  G++G+G +A+K F +M++EG+  D + F+ +L
Sbjct: 493 GKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLL 552

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
            ACSHSGL  EG   FQ M+   GI P L+HY C+VDL  RAG LE+A N V++MP++P+
Sbjct: 553 SACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPD 612

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535
           +++WG LL ACR H+NV L   V + L+++++++ G YVLLSNIYA  G WE    +R +
Sbjct: 613 VSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSL 672

Query: 536 MRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            R R +KK  G S IE+D  I  F +G     + EE+
Sbjct: 673 ARDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEI 709



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 133/439 (30%), Positives = 231/439 (52%), Gaps = 27/439 (6%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL-VDNYTYPFVL 119
           ++  A   F+QI   + Y  N+MI  Y +  +   A+  +        L  D+YT+P V+
Sbjct: 90  DIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVI 149

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           +ACG    L +G ++H  V+K+GF CDV++    I  YS+ G +  A ++F+   I+D+ 
Sbjct: 150 RACG---NLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIG 206

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK---KKGDISSARILFEHM 236
           +WN ++ GF   G++ +A EVFDEM  K     S+ I        +  DI S  +L    
Sbjct: 207 TWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISG-VLIHVY 265

Query: 237 PIK-----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
            IK     DL   N++I+ YAK G+L +A+ +FN+M  R++ SW+ ++  + Q+  P  A
Sbjct: 266 AIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIA 325

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM-KRSRITMDMIVQTALID 350
           L ++ +M   GV PD+++++   S  A++G     + IH F+ +R     D+ +  A+ID
Sbjct: 326 LGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIID 385

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME-TEGIPKDDL 409
           MY K G +D AR++F  +  K+VIS+N +I G   NG   EA+  ++ M    G   +  
Sbjct: 386 MYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQG 445

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY-----SCLVDLLSRAGELEQAL 464
            ++ +L A S  G   +G      MK H  +     ++     +CLVD+  + G+L  AL
Sbjct: 446 TWVSILTAHSQLGALKQG------MKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADAL 499

Query: 465 NIVESMPMKPNLALWGTLL 483
           ++   +P + +++ W  ++
Sbjct: 500 SLFYEVPHQSSVS-WNAII 517



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 170/361 (47%), Gaps = 16/361 (4%)

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           ++H  +V  G    +F+   LI  Y+  G +  AR  F+  + KD+ +WN ++  +   G
Sbjct: 61  QLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIG 120

Query: 193 EMGKAREVFDEMP-----QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-----DLI 242
               A + F+E       Q D  ++  +I    +  G++   R +   + +K     D+ 
Sbjct: 121 HFHAAVDCFNEFLSTSFLQSDHYTFPPVI----RACGNLDDGRKV-HCLVLKLGFECDVY 175

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
              S I  Y++ G +  A  LF+ M  R++ +W+ MI G+  +G   EAL +F EM  + 
Sbjct: 176 IAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKS 235

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           V  D +++   +  C Q+  +  G  IHV+  +  +  D+ V  ALI+MY K G L  A 
Sbjct: 236 VSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAE 295

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
            IF  M  ++++S+N ++A    N     AL  + +M + G+  D L  + +    +  G
Sbjct: 296 TIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELG 355

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
                  I   + R C     +   + ++D+ ++ G ++ A  + E +P+K  ++ W +L
Sbjct: 356 NFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVIS-WNSL 414

Query: 483 L 483
           +
Sbjct: 415 I 415


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 174/530 (32%), Positives = 290/530 (54%), Gaps = 36/530 (6%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  A ++F++I + N  + N MIR Y  +    + +  +  M    +  D+YT+P VLK
Sbjct: 89  DVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLK 148

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC     +V G +IHG   K+G    +FV NGL+ MY KCG +                 
Sbjct: 149 ACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLS---------------- 192

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK- 239
                          +AR V DEM ++D +SW+ ++ GY + +    +  +  E   +K 
Sbjct: 193 ---------------EARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKI 237

Query: 240 --DLISWNSMIDGYAKIG--DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
             D  +  S++   +     +++  + +F +M ++++ SW++MI  Y ++  P EA+ L+
Sbjct: 238 SHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELY 297

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
             M   G  PD +S+   + AC    AL LGK IH +++R ++  +++++ ALIDMY KC
Sbjct: 298 SRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKC 357

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
           G L++AR +F +M  ++V+S+  MI+  G +G G +A+  F++++  G+  D + F+  L
Sbjct: 358 GCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTL 417

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
            ACSH+GL  EG   F+ M  H  I P+LEH +C+VDLL RAG++++A   ++ M M+PN
Sbjct: 418 AACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPN 477

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535
             +WG LL ACR H +  +  +  + L +L  +  G YVLLSNIYA AG WE    IR +
Sbjct: 478 ERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNI 537

Query: 536 MRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
           M+ + +KK  G S +E++  I  F+ G+    QS+E+   +   VK   E
Sbjct: 538 MKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKE 587



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 171/352 (48%), Gaps = 17/352 (4%)

Query: 199 EVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM----IDGYAKI 254
           E+  + PQ+       ++D Y     DI + R +   + ++DL   +S+    +  YA +
Sbjct: 32  ELDQKSPQETVFLLGQVLDTY----PDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASL 87

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
            D+ +A+++F+E+PERNV   ++MI  Y  +G   E + +F  M    VRPD  +    +
Sbjct: 88  KDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVL 147

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
            AC+  G + +G+ IH    +  ++  + V   L+ MY KCG L EAR +   M++++V+
Sbjct: 148 KACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVV 207

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434
           S+N ++ G   N   ++AL+   +ME+  I  D      +L A S++   TE     + M
Sbjct: 208 SWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT--TTENVMYVKDM 265

Query: 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP---MKPNLALWGTLLLACRNHQN 491
               G +  L  ++ ++ +  +     +A+ +   M     +P+     ++L AC +   
Sbjct: 266 FFKMG-KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSA 324

Query: 492 VTLAEVVVEGLVELKA--DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           ++L +  + G +E K    +  L   L ++YA  G  E A  + + M+ R +
Sbjct: 325 LSLGK-KIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDV 375



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 95/186 (51%)

Query: 29  LQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYT 88
           L++  ++ +  +  +  T++ LL ++++  T N+   + +F ++ + +    N MI  Y 
Sbjct: 226 LEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYM 285

Query: 89  QSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF 148
           +++ P +A+  Y  M+  G   D  +   VL ACG    L  G +IHG + +   + ++ 
Sbjct: 286 KNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLL 345

Query: 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKD 208
           + N LI MY+KCG +  AR VFE  + +D+VSW  ++  +   G    A  +F ++    
Sbjct: 346 LENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSG 405

Query: 209 AISWSI 214
            +  SI
Sbjct: 406 LVPDSI 411


>gi|357118977|ref|XP_003561223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 604

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 159/408 (38%), Positives = 259/408 (63%), Gaps = 3/408 (0%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D    N L+    + G +  AR +F+    +DLVS+N +L  +   G+M  A  +FDEMP
Sbjct: 153 DTVTWNTLLRACLRSGLLPSARRLFDQMPHRDLVSYNSMLSSYAAVGDMAGAGRLFDEMP 212

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
           ++D ++W+ M+ GY +   D++SAR +F+ MP +D++SWNSM+DGYA+ GD+V A  +F+
Sbjct: 213 ERDVVTWNTMLAGYARGGADMASARAVFDAMPERDVVSWNSMLDGYAQAGDVVMAWAMFD 272

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR-PDVISVMGAISACAQVGALD 324
            MP R+  SW++++  YA+  + +E L LF  M+  GV  P+  + +  ++AC  +G L+
Sbjct: 273 GMPRRSAASWNVVLALYARRKDWRECLRLFDAMMAVGVSVPNEKTFVSVLTACGSLGDLE 332

Query: 325 LGKWIHVFMKR--SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
            GKW+H  ++    R+  D+++ TAL+ MY KCG+++ AR IF SM++++V S+N MI G
Sbjct: 333 RGKWVHGLVRERWDRLVPDVLLLTALLTMYAKCGAMETAREIFDSMSERSVPSWNSMIIG 392

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
            G++G  E+AL+ F +ME  G   ++  F+ VL +C+H GL  EG+  F  M R  G EP
Sbjct: 393 YGLHGQSEKALELFLEMEKSGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRFYGFEP 452

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
           K EH+ C++DLL RAG L+ + N+++++  K + ALWG ++ A +   N  L E V + L
Sbjct: 453 KAEHFGCMMDLLGRAGLLKDSENLIQNLQGKASPALWGIMMSASQTQNNYKLGEFVGKKL 512

Query: 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           +E+K  + G Y+LLSNIYA  G W    ++R++M++   +K  G S+I
Sbjct: 513 IEMKPAEFGPYLLLSNIYASEGRWGDVEKVREVMKENGAEKYVGLSLI 560



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 133/263 (50%), Gaps = 10/263 (3%)

Query: 224 GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
           G  SSAR L   +P  D ++WN+++    + G L +A++LF++MP R++ S++ M+  YA
Sbjct: 137 GAASSARRLIADIPRPDTVTWNTLLRACLRSGLLPSARRLFDQMPHRDLVSYNSMLSSYA 196

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
             G+   A  LF EM  +    DV++    ++  A+ GA D+     VF   +    D++
Sbjct: 197 AVGDMAGAGRLFDEMPER----DVVTWNTMLAGYARGGA-DMASARAVF--DAMPERDVV 249

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
              +++D Y + G +  A  +F  M +++  S+NV++A         E L+ F  M   G
Sbjct: 250 SWNSMLDGYAQAGDVVMAWAMFDGMPRRSAASWNVVLALYARRKDWRECLRLFDAMMAVG 309

Query: 404 IP-KDDLIFLGVLIACSHSGLATEGYRIFQSMK-RHCGIEPKLEHYSCLVDLLSRAGELE 461
           +   ++  F+ VL AC   G    G  +   ++ R   + P +   + L+ + ++ G +E
Sbjct: 310 VSVPNEKTFVSVLTACGSLGDLERGKWVHGLVRERWDRLVPDVLLLTALLTMYAKCGAME 369

Query: 462 QALNIVESMPMKPNLALWGTLLL 484
            A  I +SM  + ++  W ++++
Sbjct: 370 TAREIFDSMSER-SVPSWNSMII 391



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 34/178 (19%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK-------------- 106
           +M  A  +F+ + + +    N+M+ GY Q+ +   A + +  M R+              
Sbjct: 232 DMASARAVFDAMPERDVVSWNSMLDGYAQAGDVVMAWAMFDGMPRRSAASWNVVLALYAR 291

Query: 107 -----------------GLLVDN-YTYPFVLKACGVLMGLVEGTEIHGEVVKMG--FLCD 146
                            G+ V N  T+  VL ACG L  L  G  +HG V +     + D
Sbjct: 292 RKDWRECLRLFDAMMAVGVSVPNEKTFVSVLTACGSLGDLERGKWVHGLVRERWDRLVPD 351

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM 204
           V ++  L+ MY+KCG M  AR +F+    + + SWN ++ G+   G+  KA E+F EM
Sbjct: 352 VLLLTALLTMYAKCGAMETAREIFDSMSERSVPSWNSMIIGYGLHGQSEKALELFLEM 409



 Score = 43.5 bits (101), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 12/104 (11%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           M+ A  +F+ + + +    N+MI GY      +KAL  ++ M++ G   +  T+  VL +
Sbjct: 368 METAREIFDSMSERSVPSWNSMIIGYGLHGQSEKALELFLEMEKSGPRPNETTFICVLSS 427

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGC 165
           C            HG +V  G+ C   +V    G   K  H GC
Sbjct: 428 CA-----------HGGLVLEGWWCFDRMVR-FYGFEPKAEHFGC 459


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 174/526 (33%), Positives = 288/526 (54%), Gaps = 36/526 (6%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A ++F++I + N  + N MIR Y  +    + +  +  M    +  D+YT+P VLKAC  
Sbjct: 93  ARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSC 152

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
              +V G +IHG   K+G    +FV NGL+ MY KCG +                     
Sbjct: 153 SGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLS-------------------- 192

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK---DL 241
                      +AR V DEM ++D +SW+ ++ GY + +    +  +  E   +K   D 
Sbjct: 193 -----------EARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDA 241

Query: 242 ISWNSMIDGYAKIG--DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
            +  S++   +     +++  + +F +M ++++ SW++MI  Y ++  P EA+ L+  M 
Sbjct: 242 GTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRME 301

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
             G  PD +S+   + AC    AL LGK IH +++R ++  +++++ ALIDMY KCG L+
Sbjct: 302 ADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLE 361

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           +AR +F +M  ++V+S+  MI+  G +G G +A+  F++++  G+  D + F+  L ACS
Sbjct: 362 KARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACS 421

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           H+GL  EG   F+ M  H  I P+LEH +C+VDLL RAG++++A   ++ M M+PN  +W
Sbjct: 422 HAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVW 481

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
           G LL ACR H +  +  +  + L +L  +  G YVLLSNIYA AG WE    IR +M+ +
Sbjct: 482 GALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSK 541

Query: 540 KIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
            +KK  G S +E++  I  F+ G+    QS+E+   +   VK   E
Sbjct: 542 GLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKE 587



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 171/352 (48%), Gaps = 17/352 (4%)

Query: 199 EVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM----IDGYAKI 254
           E+  + PQ+       ++D Y     DI + R +   + ++DL   +S+    +  YA +
Sbjct: 32  ELDQKSPQETVFLLGQVLDTY----PDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASL 87

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
            D+ +A+++F+E+PERNV   ++MI  Y  +G   E + +F  M    VRPD  +    +
Sbjct: 88  KDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVL 147

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
            AC+  G + +G+ IH    +  ++  + V   L+ MY KCG L EAR +   M++++V+
Sbjct: 148 KACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVV 207

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434
           S+N ++ G   N   ++AL+   +ME+  I  D      +L A S++   TE     + M
Sbjct: 208 SWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT--TTENVMYVKDM 265

Query: 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP---MKPNLALWGTLLLACRNHQN 491
               G +  L  ++ ++ +  +     +A+ +   M     +P+     ++L AC +   
Sbjct: 266 FFKMG-KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSA 324

Query: 492 VTLAEVVVEGLVELKA--DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           ++L +  + G +E K    +  L   L ++YA  G  E A  + + M+ R +
Sbjct: 325 LSLGK-KIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDV 375



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 95/186 (51%)

Query: 29  LQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYT 88
           L++  ++ +  +  +  T++ LL ++++  T N+   + +F ++ + +    N MI  Y 
Sbjct: 226 LEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYM 285

Query: 89  QSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF 148
           +++ P +A+  Y  M+  G   D  +   VL ACG    L  G +IHG + +   + ++ 
Sbjct: 286 KNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLL 345

Query: 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKD 208
           + N LI MY+KCG +  AR VFE  + +D+VSW  ++  +   G    A  +F ++    
Sbjct: 346 LENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSG 405

Query: 209 AISWSI 214
            +  SI
Sbjct: 406 LVPDSI 411


>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 527

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 176/513 (34%), Positives = 287/513 (55%), Gaps = 40/513 (7%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N +IR   + S+    ++ Y +++ +GL+ D++TYPFVL+A G L   VEG + H   +K
Sbjct: 15  NLLIRTLARRSSHADVMAVYYDLRERGLVADSFTYPFVLRAIGALQISVEGRKAHAATLK 74

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
            GF  D +  + L+ MY+  G +  AR VF+    + +V WN++LR +V CG   +A  +
Sbjct: 75  TGFRWDAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVAL 134

Query: 201 FDEM------PQK--------------------------DAIS------WSIMIDGYRKK 222
            +EM      P +                          D ++       + ++D Y  K
Sbjct: 135 AEEMERGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMDGVTGFSLPVANALLDMY-VK 193

Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
            G +  A  LFE MP ++++SW +++ GYA  G +  A+ LF++  E+++  W+ MI+ Y
Sbjct: 194 NGCLEEAVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAY 253

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
            QHG   EAL LFR+M    + PD  +V+  ++ CA +GALD G+ IH F +   + +D 
Sbjct: 254 VQHGCFIEALSLFRDMQMHQIEPDRFTVVTLLTCCANLGALDQGQLIHQFAEGRNMKLDA 313

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
           ++ TALIDMY KCG ++++  +F  M  ++  ++  +I GL  NG    AL+ F  ME  
Sbjct: 314 VLGTALIDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGRALELFEDMERS 373

Query: 403 GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
               D + F+GVL AC H GL  EG + F++MK    I P++EHYSCLV+LL RAG+L++
Sbjct: 374 EAKPDSVTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRVEHYSCLVNLLGRAGQLDE 433

Query: 463 ALNIVESMPM-KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521
           A  +++S+P+ K  + L+G L+ AC+   NV ++E + + + +       + +L+SN+YA
Sbjct: 434 AEKLIKSIPINKDAMPLFGALITACKAQGNVKMSERLTKRIGKQGYQIPDVNLLMSNVYA 493

Query: 522 DAGMWEHALRIRKMMRKRKIKKETGRSVIEIDG 554
            A  WE  +R+R  M    +KK  G S+IE+ G
Sbjct: 494 TASRWEDVVRVRSKMAHPSVKKNAGCSLIEVKG 526



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 159/349 (45%), Gaps = 44/349 (12%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            ++ A ++F+++ Q    + N M+R Y +     +A++    M+R  L  D  T    L 
Sbjct: 96  RLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVALAEEMERGRLTPDRVTLLTALT 155

Query: 121 ACGVLMGLVEGTEIHGEVVKM-GFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           AC     L  G +IH  +  + GF   + V N L+ MY K G +  A ++FE    +++V
Sbjct: 156 ACSRAGDLSLGRKIHAYMDGVTGF--SLPVANALLDMYVKNGCLEEAVNLFEKMPSRNVV 213

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239
           SW  ++ G+   G++ KAR +F +  +KD I W+ MI+ Y  + G    A  LF  M + 
Sbjct: 214 SWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAY-VQHGCFIEALSLFRDMQMH 272

Query: 240 ---------------------------------------DLISWNSMIDGYAKIGDLVAA 260
                                                  D +   ++ID YAK G +  +
Sbjct: 273 QIEPDRFTVVTLLTCCANLGALDQGQLIHQFAEGRNMKLDAVLGTALIDMYAKCGHVEKS 332

Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
            ++F  M  R+  +W+ +I G A +G    AL LF +M     +PD ++ +G +SAC   
Sbjct: 333 VEVFERMEGRDTKAWTAIICGLATNGQAGRALELFEDMERSEAKPDSVTFIGVLSACCHG 392

Query: 321 GALDLGKWIHVFMKR-SRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           G +D G+     MK   RI   +   + L+++  + G LDEA ++  S+
Sbjct: 393 GLVDEGRKQFRAMKEVYRIRPRVEHYSCLVNLLGRAGQLDEAEKLIKSI 441



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 132/298 (44%), Gaps = 18/298 (6%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            +D+A  LF+Q  + +  M   MI  Y Q     +ALS + +M+   +  D +T   +L 
Sbjct: 227 QVDKARLLFHQCTEKDLIMWTAMINAYVQHGCFIEALSLFRDMQMHQIEPDRFTVVTLLT 286

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C  L  L +G  IH          D  +   LI MY+KCGH+  +  VFE  E +D  +
Sbjct: 287 CCANLGALDQGQLIHQFAEGRNMKLDAVLGTALIDMYAKCGHVEKSVEVFERMEGRDTKA 346

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK---KKGDISSARILFEHMP 237
           W  ++ G    G+ G+A E+F++M + +A   S+   G        G +   R  F  M 
Sbjct: 347 WTAIICGLATNGQAGRALELFEDMERSEAKPDSVTFIGVLSACCHGGLVDEGRKQFRAMK 406

Query: 238 ----IKDLIS-WNSMIDGYAKIGDLVAAQQLFNEMP--ERNVFSWSIMIDGYAQHGNPKE 290
               I+  +  ++ +++   + G L  A++L   +P  +  +  +  +I      GN K 
Sbjct: 407 EVYRIRPRVEHYSCLVNLLGRAGQLDEAEKLIKSIPINKDAMPLFGALITACKAQGNVKM 466

Query: 291 ALYLFREMLCQGVR-PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA 347
           +  L + +  QG + PDV  +M  + A A        +W  V   RS++    + + A
Sbjct: 467 SERLTKRIGKQGYQIPDVNLLMSNVYATAS-------RWEDVVRVRSKMAHPSVKKNA 517


>gi|15233645|ref|NP_195514.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213618|sp|Q9SZK1.1|PP355_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g38010
 gi|4467107|emb|CAB37541.1| putative protein [Arabidopsis thaliana]
 gi|7270784|emb|CAB80466.1| putative protein [Arabidopsis thaliana]
 gi|332661463|gb|AEE86863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 182/547 (33%), Positives = 301/547 (55%), Gaps = 7/547 (1%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           K+ L+ L+    +     QI  QL T DL+ +   +++++  L          +  L + 
Sbjct: 6   KSVLLELISRCSSLRVFKQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSSVILHSI 65

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
               +++ +NT++  Y     P+  +  Y      G   D +T+P V KACG   G+ EG
Sbjct: 66  RSVLSSFSYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREG 125

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            +IHG V KMGF  D++V N L+  Y  CG    A  VF    ++D+VSW  ++ GF   
Sbjct: 126 KQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRT 185

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR----ILFEHMPIKDLISWNSM 247
           G   +A + F +M  +  ++  + +     + G +S  +    ++ +   +  L + N++
Sbjct: 186 GLYKEALDTFSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNAL 245

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM-LCQGVRPD 306
           ID Y K   L  A ++F E+ +++  SW+ MI G       KEA+ LF  M    G++PD
Sbjct: 246 IDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPD 305

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
              +   +SACA +GA+D G+W+H ++  + I  D  + TA++DMY KCG ++ A  IF 
Sbjct: 306 GHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFN 365

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            +  KNV ++N ++ GL ++G G E+L+ F +M   G   + + FL  L AC H+GL  E
Sbjct: 366 GIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDE 425

Query: 427 GYRIFQSMK-RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
           G R F  MK R   + PKLEHY C++DLL RAG L++AL +V++MP+KP++ + G +L A
Sbjct: 426 GRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICGAILSA 485

Query: 486 CRNHQNV-TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           C+N   +  L + +++  ++++ +D G+YVLLSNI+A    W+   RIR++M+ + I K 
Sbjct: 486 CKNRGTLMELPKEILDSFLDIEFEDSGVYVLLSNIFAANRRWDDVARIRRLMKVKGISKV 545

Query: 545 TGRSVIE 551
            G S IE
Sbjct: 546 PGSSYIE 552


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 187/527 (35%), Positives = 295/527 (55%), Gaps = 9/527 (1%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +  A +LFN +   N    N MI G+ Q+    +A   +  M   G+  D+ T+   L +
Sbjct: 124 LSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPS 183

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
                 L +G EIHG +++ G   DVF+ + LI +Y KC  +G A  +F+ S   D+V  
Sbjct: 184 VTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVC 243

Query: 182 NLVLRGFVECGEMGKAREVF----DEMPQKDAISWSIMIDGYRK----KKGDISSARILF 233
             ++ G+V  G    A E+F    +E    +A++ + ++           G    A IL 
Sbjct: 244 TAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILK 303

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
             +  +  +  ++++D YAK G L  A Q+F  MPE++   W+ +I   +Q+G P+EA+ 
Sbjct: 304 HGLDERRHVG-SAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAID 362

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           LFR+M  +G+  D +S+  A+SACA + AL  GK IH FM +     ++  ++ALIDMY 
Sbjct: 363 LFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYG 422

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCG+L  AR +F  M +KN +S+N +IA  G +G  E +L  F +M  +GI  D + FL 
Sbjct: 423 KCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLT 482

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           +L AC H+G   +G + F+ M    GI  ++EHY+C+VDL  RAG L +A   +++MP  
Sbjct: 483 ILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFS 542

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
           P+  +WGTLL ACR H NV LAEV    L++L  ++ G YVLLSN++ADAG W    +IR
Sbjct: 543 PDDGVWGTLLGACRVHGNVELAEVASRCLLDLDPENSGCYVLLSNVHADAGQWGSVRKIR 602

Query: 534 KMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFV 580
            +M+KR ++K  G S IE++     FV+ +    +S ++  V+ + +
Sbjct: 603 SLMKKRGVQKVPGYSWIEVNKTTHMFVAADGSHPESAQIYSVLNNLL 649



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/466 (26%), Positives = 230/466 (49%), Gaps = 13/466 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ A RLF+++   +  + N M+ G+ +   P  A+  + +M+      ++ T+  VL  
Sbjct: 23  IEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQTKPNSITFASVLSI 82

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C        G ++HG V+  GF  D  V N L+ MYSK G +  A  +F      ++V+W
Sbjct: 83  CASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTW 142

Query: 182 NLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRK----KKGDISSARILF 233
           N ++ GFV+ G M +A  +F EM       D+I+++  +    +    K+G      IL 
Sbjct: 143 NGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYIL- 201

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
            H    D+   +++ID Y K  D+  A ++F +    ++   + +I GY  +G   +AL 
Sbjct: 202 RHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALE 261

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           +FR +L + + P+ +++   + ACA +  L+LGK +H  + +  +     V +A++DMY 
Sbjct: 262 IFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYA 321

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCG LD A +IF  M +K+ + +N +I     NG  +EA+  F QM  EG+  D +    
Sbjct: 322 KCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISA 381

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
            L AC++      G  I   M +    + ++   S L+D+  + G L  A  + + M  K
Sbjct: 382 ALSACANLPALHHGKAIHSFMIKG-AFDSEVFAESALIDMYGKCGNLSVARCVFDMMREK 440

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLS 517
            N   W +++ A  +H ++ ++  +   ++E  ++ D      +LS
Sbjct: 441 -NEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILS 485



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 137/462 (29%), Positives = 227/462 (49%), Gaps = 35/462 (7%)

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
           MGF  D FV + LI +Y++ G +  AR +F+    KD V WN++L GFV+CGE   A +V
Sbjct: 1   MGFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKV 60

Query: 201 FDEM----PQKDAISW----SIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA 252
           F++M     + ++I++    SI       + G+     ++        L++ N+++  Y+
Sbjct: 61  FEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVA-NALVAMYS 119

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
           K G L  A +LFN MP+ NV +W+ MI G+ Q+G   EA  LF EM+  GV PD I+   
Sbjct: 120 KFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFAS 179

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
            + +  +  +L  GK IH ++ R  I +D+ +++ALID+Y KC  +  A +IF   T  +
Sbjct: 180 FLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVD 239

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT--EGYRI 430
           ++    +I+G  +NG   +AL+ F  +  E +  + +    VL AC  +GLAT   G  +
Sbjct: 240 IVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPAC--AGLATLNLGKEL 297

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
             ++ +H G++ +    S ++D+ ++ G L+ A  I   MP K +   W  ++  C   Q
Sbjct: 298 HANILKH-GLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEK-DAVCWNAIITNCS--Q 353

Query: 491 NVTLAEVV-------VEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
           N    E +        EGL    + DC       +  A+     H   I   M K     
Sbjct: 354 NGKPQEAIDLFRQMGREGL----SYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDS 409

Query: 544 ETGRSVIEID-----GNIKEFVSGEIFDVQSEELELVIQSFV 580
           E       ID     GN+   V+  +FD+  E+ E+   S +
Sbjct: 410 EVFAESALIDMYGKCGNLS--VARCVFDMMREKNEVSWNSII 449


>gi|326507168|dbj|BAJ95661.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 179/474 (37%), Positives = 266/474 (56%), Gaps = 13/474 (2%)

Query: 110 VDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSV 169
           +DNY+    L     +  +V G ++H   VK+G   D FV+N LI MYS C +   ARSV
Sbjct: 91  IDNYSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSV 150

Query: 170 FEGSE--IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ-----KDAISWSIMIDGYRK- 221
            + +     D VSWN ++ G++  G   KA + F +M +      D    + ++   R  
Sbjct: 151 LDSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTC 210

Query: 222 --KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMI 279
             K G +  A ++     I   +  +S+I  YAK G +  A+++F+ MP+RN   W+ MI
Sbjct: 211 MMKVGKLCHALLVTNGFEINCYMG-SSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMI 269

Query: 280 DGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRIT 339
            GY Q G  KEA+ LFR+M   GV+ D  ++   +S+C Q+GALDLG+++H +     + 
Sbjct: 270 SGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLGRYVHAYCDIHGLG 329

Query: 340 MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
            D+ V+ +LIDMY KCG + +A  IF  M K++  S+ V I G   NG   EAL  FAQM
Sbjct: 330 KDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWTV-IMGFAANGLSGEALDLFAQM 388

Query: 400 ETEG-IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458
           E EG +  +++ FLGVL +CSH GL  +GYR F  M    GI P++EHY C+VDLL RA 
Sbjct: 389 EEEGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPRIEHYGCMVDLLGRAK 448

Query: 459 ELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSN 518
            L +A   ++ MP+ P+  +W +LL ACR    V LAE V E +  L+ + CG  VLLS 
Sbjct: 449 LLAEAEQFIKEMPIAPDAVMWRSLLFACRTCGEVGLAEYVAERIQVLEPNKCGGDVLLST 508

Query: 519 IYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           +YA    W  A ++R  +   +  K+ G S IE+DG + EF +G+    ++E +
Sbjct: 509 VYATTSRWVDANKVRTGIYSGRKTKQPGCSFIEVDGCVHEFFAGDESHFETEAI 562



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 160/311 (51%), Gaps = 20/311 (6%)

Query: 27  HILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLN--MDQAERLFNQIYQPNTYMHNTMI 84
           H L +   L+++  +    TL  +  S + P+T    +D A +        +T   NT+I
Sbjct: 116 HALSVKLGLSSDTFVLN--TLINMYSSCSYPSTARSVLDSAPK-----GASDTVSWNTII 168

Query: 85  RGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFL 144
            GY  +  P KAL  +  M +  +++D+ T    L AC     +  G   H  +V  GF 
Sbjct: 169 AGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHALLVTNGFE 228

Query: 145 CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM 204
            + ++ + LI MY+KCG +  AR +F+G   ++ V W  ++ G+ + G+  +A ++F +M
Sbjct: 229 INCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDM 288

Query: 205 P----QKDAISWSIMIDGYRKKKGDISSARILFEHMPI----KDLISWNSMIDGYAKIGD 256
                + D  + S ++     + G +   R +  +  I    KD+   NS+ID Y+K GD
Sbjct: 289 QIAGVKVDDATISTVVSSC-GQMGALDLGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGD 347

Query: 257 LVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ-GVRPDVISVMGAIS 315
           +  A  +F  M +R+ FSW++++ G+A +G   EAL LF +M  + GV P+ I+ +G ++
Sbjct: 348 IKKAYDIFCGMVKRDNFSWTVIM-GFAANGLSGEALDLFAQMEEEGGVMPNEITFLGVLT 406

Query: 316 ACAQVGALDLG 326
           +C+  G ++ G
Sbjct: 407 SCSHGGLVEQG 417


>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
 gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
          Length = 581

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 174/473 (36%), Positives = 271/473 (57%), Gaps = 10/473 (2%)

Query: 110 VDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSV 169
           +DNY+      A   L  +  G ++H   VK+G + D FV+N LI MYS C +   AR V
Sbjct: 91  LDNYSLNIAFSATSRLPSVSVGAQLHSLSVKLGLVSDTFVLNSLINMYSSCSYPATARQV 150

Query: 170 FEGSE--IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY---RKKKG 224
            + +     D VSWN ++ G++  G   KA + F +M ++      + +        K G
Sbjct: 151 LDSAPQGACDTVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASAKAG 210

Query: 225 DISSARILFEHMPIK----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMID 280
            +   R+    + +     +    +S+I  YAK G +  A+++F+ M ERNV  W+ MI 
Sbjct: 211 KVKVGRLCHSLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMIS 270

Query: 281 GYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM 340
           GY Q G  KEA+ LFR+M   G++ D  ++   +S+CAQ+GALDLG+++H +     +  
Sbjct: 271 GYTQLGKFKEAVNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGK 330

Query: 341 DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME 400
           ++ V+ +LIDMY KCG +++A  IF  +TK++V S+  MI G  +NG   EAL  FAQME
Sbjct: 331 ELSVKNSLIDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCSEALDLFAQME 390

Query: 401 TEG-IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
            EG +  +++ FLGVL +CSH GL  +G+  FQ M     + P++EHY C+VDLL RA  
Sbjct: 391 GEGKVMPNEVTFLGVLTSCSHGGLVEQGFHYFQRMSMVYKLAPRIEHYGCMVDLLGRAKL 450

Query: 460 LEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519
           L +A   +++MP+ P++ +W +LL ACR    V LAE V E ++EL+   C  +VLLSN+
Sbjct: 451 LTEAEQFIKNMPIAPDVVVWRSLLFACRACGEVGLAEFVAERILELEPKKCAGHVLLSNV 510

Query: 520 YADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           YA    W     +R  M   ++ K+ G S IE+DG + EF +G+   +++E +
Sbjct: 511 YATTSRWVDVNELRTSMDNSRMSKQPGCSFIEVDGCVHEFFAGDESHLETEAI 563



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 160/313 (51%), Gaps = 22/313 (7%)

Query: 40  LITEPFTLSQLL---MSLTSPNTLNMDQAERLFNQIYQP--NTYMHNTMIRGYTQSSNPQ 94
           L+++ F L+ L+    S + P T     A ++ +   Q   +T   NT+I GY +   P 
Sbjct: 124 LVSDTFVLNSLINMYSSCSYPAT-----ARQVLDSAPQGACDTVSWNTIISGYLRGGMPN 178

Query: 95  KALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLI 154
           KAL  +  M ++ + +D+ T    L A      +  G   H  VV  G   + ++ + LI
Sbjct: 179 KALQAFGQMVKEQVTLDDVTLLNALVASAKAGKVKVGRLCHSLVVVNGAGINCYMGSSLI 238

Query: 155 GMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAI 210
            MY+KCG +  AR VF G   +++V W  ++ G+ + G+  +A  +F +M     + D  
Sbjct: 239 SMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMKVDDG 298

Query: 211 SWSIMIDGYRKKKGDISSARILFEHMPI----KDLISWNSMIDGYAKIGDLVAAQQLFNE 266
           + + ++     + G +   R +  +  +    K+L   NS+ID Y+K GD+  A ++F  
Sbjct: 299 TIATVVSSC-AQMGALDLGRYVHAYCDVHGLGKELSVKNSLIDMYSKCGDINKAHEIFCG 357

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDL 325
           + +R+VFSW+ MI G+  +G   EAL LF +M  +G V P+ ++ +G +++C+  G ++ 
Sbjct: 358 LTKRDVFSWTAMIMGFTVNGLCSEALDLFAQMEGEGKVMPNEVTFLGVLTSCSHGGLVEQ 417

Query: 326 GKWIHVFMKRSRI 338
           G   H F + S +
Sbjct: 418 G--FHYFQRMSMV 428


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 186/554 (33%), Positives = 299/554 (53%), Gaps = 81/554 (14%)

Query: 68  LFNQ-IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
           LFN+ + + N +  N++I    +S +  +AL  + +M++  L  +  T+P  +K+C  L+
Sbjct: 107 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 166

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
            L  G + H + +  GF  D+FV + L+ MYSKCG            E++D         
Sbjct: 167 DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCG------------ELRD--------- 205

Query: 187 GFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM---------- 236
                     AR +FDE+  ++ +SW+ MI GY +   D   A +LF+            
Sbjct: 206 ----------ARTLFDEISHRNIVSWTSMITGYVQND-DAHRALLLFKEFLVEESGSEGD 254

Query: 237 ------PIK-------------------------------DLISWNSMIDGYAKIGDLVA 259
                 PI                                DL   N+++D YAK G+L  
Sbjct: 255 GEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGV 314

Query: 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACA 318
           ++++F+ M ER+V SW+ +I  YAQ+G   E++ +F  M+  G +  + +++   + ACA
Sbjct: 315 SRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACA 374

Query: 319 QVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNV 378
             G+  LGK IH  + +  +  ++ V T++IDMY KCG ++ AR+ F  M +KNV S++ 
Sbjct: 375 HSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSA 434

Query: 379 MIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC 438
           M+AG GM+G  +EAL+ F +M   G+  + + F+ VL ACSH+GL  EG+  F++M    
Sbjct: 435 MVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEF 494

Query: 439 GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVV 498
            +EP +EHY C+VDLL RAG L++A ++++ M ++P+  +WG LL ACR H+NV L E+ 
Sbjct: 495 DVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEIS 554

Query: 499 VEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKE 558
              L EL   +CG YVLLSNIYADAG WE   R+R +M+   + K  G S+++I G +  
Sbjct: 555 ARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHV 614

Query: 559 FVSGEIFDVQSEEL 572
           F+ G+    Q E++
Sbjct: 615 FLVGDREHPQHEKI 628



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 158/319 (49%), Gaps = 21/319 (6%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVN--MKRKG------LLVDNY 113
           +  A  LF++I   N     +MI GY Q+ +  +AL  +    ++  G      + VD  
Sbjct: 203 LRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPI 262

Query: 114 TYPFVLKACGVL--MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE 171
               VL AC  +    + EG  +HG ++K GF  D+ V N L+  Y+KCG +G +R VF+
Sbjct: 263 AMVSVLSACSRVSEKSITEG--VHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFD 320

Query: 172 GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISW-SIMIDGYRKKKGDISSAR 230
           G   +D++SWN ++  + + G   ++ E+F  M +   I++ ++ +           S R
Sbjct: 321 GMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQR 380

Query: 231 I--LFEHMPIK-----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
           +        IK     ++    S+ID Y K G +  A++ F+ M E+NV SWS M+ GY 
Sbjct: 381 LGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYG 440

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDM 342
            HG+ KEAL +F EM   GV+P+ I+ +  ++AC+  G L+ G  W         +   +
Sbjct: 441 MHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGV 500

Query: 343 IVQTALIDMYMKCGSLDEA 361
                ++D+  + G L EA
Sbjct: 501 EHYGCMVDLLGRAGYLKEA 519


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 191/550 (34%), Positives = 292/550 (53%), Gaps = 72/550 (13%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           Q  AQ+  + L    F  ++++    S    ++D A  +F++I  P++ ++N++IR YT+
Sbjct: 98  QAHAQIVLHGLQPNAFLAAKMVAMYASSG--DLDSAVVVFDRIDNPSSLLYNSIIRAYTR 155

Query: 90  SSNPQKA---LSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCD 146
                     L  Y  M   GLL DN+T PFVLK+C  L  +  G  +HG+ +++G   D
Sbjct: 156 HGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGD 215

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
            +V   LI M                               +V+CG +G AR+       
Sbjct: 216 FYVGASLIDM-------------------------------YVKCGVIGDARK------- 237

Query: 207 KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNE 266
                                    LF+ M ++D+ SWN++I GY K G++  A+ LF  
Sbjct: 238 -------------------------LFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFER 272

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG--VRPDVISVMGAISACAQVGALD 324
           M  RN+ SW+ MI GY Q+G  ++AL LF EML  G  ++P+ ++++  + ACAQ  AL+
Sbjct: 273 MEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALE 332

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF--YSMTKKNVISYNVMIAG 382
            G+ IH F     + ++  VQTAL  MY KC SL EAR  F   +   KN+I++N MI  
Sbjct: 333 RGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITA 392

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
              +G G EA+  F  M   G+  D + F+G+L  CSHSGL   G   F  M     +EP
Sbjct: 393 YASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEP 452

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
           ++EHY+C+VDLL RAG L +A  ++  MPM+   ++WG LL ACR+H+N+ +AE+    L
Sbjct: 453 RVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRL 512

Query: 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
             L+ D+ G YVLLSN+YA+AGMWE   ++R +++ + +KK  G S IEI+G    F+  
Sbjct: 513 FVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGA 572

Query: 563 EIFDVQSEEL 572
           +    Q++E+
Sbjct: 573 DKSHPQAKEI 582



 Score = 40.4 bits (93), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 74/181 (40%), Gaps = 5/181 (2%)

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
           + LG+  H  +    +  +  +   ++ MY   G LD A  +F  +   + + YN +I  
Sbjct: 93  IKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRA 152

Query: 383 LGMNG---FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439
              +G        L+ +A+M   G+  D+     VL +C+       G R         G
Sbjct: 153 YTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMG-RCVHGQGLRVG 211

Query: 440 IEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVV 499
           +E      + L+D+  + G +  A  + + M ++ ++A W  L+        + +AE + 
Sbjct: 212 LEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVR-DMASWNALIAGYMKEGEIGVAEDLF 270

Query: 500 E 500
           E
Sbjct: 271 E 271


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 179/513 (34%), Positives = 283/513 (55%), Gaps = 38/513 (7%)

Query: 66  ERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVL 125
             +F++I + N    N MIR Y  +     AL  + NM   G+  D+YTYP VLKA    
Sbjct: 91  RHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGS 150

Query: 126 MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL 185
             L  G +IH  VV++G   +VFV NGLI MY KCG                        
Sbjct: 151 EDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCG------------------------ 186

Query: 186 RGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI----KDL 241
                C  + +A  V D+MP +D +SW+ ++ G   + G    A  + + M +     D 
Sbjct: 187 -----C--LVEACRVLDQMPCRDVVSWNSLVAGC-ARNGQFDDALEVCKEMELLGLKPDA 238

Query: 242 ISWNSMIDGYAK--IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
            +  S++       + ++   +++F ++  +++ SW++MI  Y  +  P EA+ +F +M 
Sbjct: 239 GTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQME 298

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
              V PD IS+   + AC  + AL LG+ IH ++ R R+  +++++ ALIDMY KCG L+
Sbjct: 299 DHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLE 358

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
            AR +F  M  ++V+S+  MI+  GMNG G +A+  F++M+  G+  D + F+ VL ACS
Sbjct: 359 YAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACS 418

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           H+GL  EG   F+ M   C I P++EH+ C+VDLL RAG++++A   ++ MPM+PN  +W
Sbjct: 419 HAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVW 478

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
           G LL ACR + N+ +  +  + L +L  +  G YVLLSNIYA AG WE    +R +M+ +
Sbjct: 479 GALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTK 538

Query: 540 KIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            IKK  G S  E+D  +  F++G+    QS+++
Sbjct: 539 GIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQI 571



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 153/320 (47%), Gaps = 8/320 (2%)

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           ++  YA  G+  + + +F+E+P++NV  +++MI  Y  +    +AL +F+ M   G+ PD
Sbjct: 77  LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 136

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
             +    + A +    L +G  IH  + R  + +++ V   LI MY KCG L EA R+  
Sbjct: 137 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 196

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            M  ++V+S+N ++AG   NG  ++AL+   +ME  G+  D      +L A +++ L   
Sbjct: 197 QMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNV 256

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI---VESMPMKPNLALWGTLL 483
            +     MK        L  ++ ++ +        +A++I   +E   + P+     ++L
Sbjct: 257 SFVKEMFMKL---ANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVL 313

Query: 484 LACRNHQNVTLAEVVVEGLVELK-ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
            AC +   + L   + E +V  +   +  L   L ++YA  G  E+A  +   M+ R + 
Sbjct: 314 PACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVV 373

Query: 543 KETGR-SVIEIDGNIKEFVS 561
             T   S   ++G  ++ VS
Sbjct: 374 SWTSMISAYGMNGKGRDAVS 393



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 147/343 (42%), Gaps = 79/343 (23%)

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMP------ 237
           ++R +  CGE    R +FDE+P+K+ + +++MI  Y       S A ++F++M       
Sbjct: 77  LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHL-YSDALLVFKNMAGHGIDP 135

Query: 238 --------------IKDLISW---------------------NSMIDGYAKIGDLVAAQQ 262
                          +DL  W                     N +I  Y K G LV A +
Sbjct: 136 DHYTYPCVLKASSGSEDL--WVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACR 193

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           + ++MP R+V SW+ ++ G A++G   +AL + +EM   G++PD  ++   + A      
Sbjct: 194 VLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPA------ 247

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
                               +  T L ++          + +F  +  K+++S+NVMIA 
Sbjct: 248 --------------------VTNTCLDNVSF-------VKEMFMKLANKSLVSWNVMIAV 280

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
              N    EA+  F QME   +  D +    VL AC        G RI + + R   ++P
Sbjct: 281 YMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRK-RLQP 339

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
            L   + L+D+ ++ G LE A  + + M  + ++  W +++ A
Sbjct: 340 NLLLENALIDMYAKCGCLEYAREVFDQMKFR-DVVSWTSMISA 381



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 122/269 (45%), Gaps = 11/269 (4%)

Query: 29  LQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYT 88
           L++  ++    L  +  T++ LL ++T+    N+   + +F ++   +    N MI  Y 
Sbjct: 223 LEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYM 282

Query: 89  QSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF 148
            +S P +A+  ++ M+   +  D  +   VL ACG L  L+ G  IH  VV+     ++ 
Sbjct: 283 NNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLL 342

Query: 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP--- 205
           + N LI MY+KCG +  AR VF+  + +D+VSW  ++  +   G+   A  +F  M    
Sbjct: 343 LENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLG 402

Query: 206 -QKDAISWSIMIDGYRKKKGDISSARILFEHMP-----IKDLISWNSMIDGYAKIGDLVA 259
              D+I++  ++       G +   R  F+ M      +  +  +  M+D   + G +  
Sbjct: 403 LNPDSIAFVSVLSAC-SHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDE 461

Query: 260 AQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
           A     +MP E N   W  ++     + N
Sbjct: 462 AYGFIKQMPMEPNERVWGALLSACRVYSN 490


>gi|242059647|ref|XP_002458969.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
 gi|241930944|gb|EES04089.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
          Length = 530

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 161/442 (36%), Positives = 258/442 (58%), Gaps = 2/442 (0%)

Query: 111 DNYTYPFVLKACGVLMGLVEGTEIHG-EVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSV 169
           D++T PF L A   L  L  G  +H            + V N L+ +Y+KC     A + 
Sbjct: 81  DHFTLPFALNAAASLRLLPLGASLHAVAFRLGLLPLRLPVANALVDLYAKCEEFSAAHAA 140

Query: 170 FEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSA 229
                  D VS+N +L        +  A  +F  M  +  +SW+ M+  Y    GD+ SA
Sbjct: 141 LADIPAPDAVSFNSLLCAHARNASVRPAESLFAAMRSRTQVSWNAMVVLY-VSAGDLVSA 199

Query: 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
           R +F+ MP +D  SW+ +I GY K G +  A++LF++MP +N+ + + MI+GYAQ G PK
Sbjct: 200 RRVFDEMPTRDTASWSVLIAGYCKGGLVQNARELFDKMPSKNLVARTAMINGYAQTGQPK 259

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
            AL LFR++   G+ PD  +++G ISA +Q+G+ +L  W+  ++ R +I  ++ V TAL+
Sbjct: 260 AALALFRDLEAAGIEPDGATMVGVISAVSQIGSTELAGWVGAYVDRKKIERNVKVLTALV 319

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           DM+ KCG++++A   F  + + +   Y  +I+GL  +G  + AL  F +M+ + +  D +
Sbjct: 320 DMHAKCGNIEQALSAFREIPQPDAYPYTALISGLATHGHEKLALSVFERMQVQAVKPDPI 379

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            F+GVL ACSH+GL  +G   +++M R  GI  + +HY+C++D+L RAG +E+A  +V++
Sbjct: 380 TFVGVLTACSHTGLVDKGLEYWEAMVRDYGIVRRADHYACVIDMLGRAGRIEEAFEMVQT 439

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           MPM P+    G LL AC+ ++NV +AE+V   L EL+  + G Y+LLSNIYA   +WE A
Sbjct: 440 MPMGPHPGALGALLSACKTYENVEIAEIVANKLFELEPWNTGNYILLSNIYAGKELWEEA 499

Query: 530 LRIRKMMRKRKIKKETGRSVIE 551
            R+R +MR +   K  G +  E
Sbjct: 500 ERVRSLMRTKLPFKNPGSTWFE 521



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 62/143 (43%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +  A  LF+++   N      MI GY Q+  P+ AL+ + +++  G+  D  T   V+ A
Sbjct: 227 VQNARELFDKMPSKNLVARTAMINGYAQTGQPKAALALFRDLEAAGIEPDGATMVGVISA 286

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
              +        +   V +     +V V+  L+ M++KCG++  A S F      D   +
Sbjct: 287 VSQIGSTELAGWVGAYVDRKKIERNVKVLTALVDMHAKCGNIEQALSAFREIPQPDAYPY 346

Query: 182 NLVLRGFVECGEMGKAREVFDEM 204
             ++ G    G    A  VF+ M
Sbjct: 347 TALISGLATHGHEKLALSVFERM 369



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 109/275 (39%), Gaps = 31/275 (11%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGL-----LVDNYTY 115
           ++  A R+F+++   +T   + +I GY +    Q A   +  M  K L     +++ Y  
Sbjct: 195 DLVSARRVFDEMPTRDTASWSVLIAGYCKGGLVQNARELFDKMPSKNLVARTAMINGYAQ 254

Query: 116 PFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI 175
               KA   L   +E   I  +   M          G+I   S+ G    A  V    + 
Sbjct: 255 TGQPKAALALFRDLEAAGIEPDGATM---------VGVISAVSQIGSTELAGWVGAYVDR 305

Query: 176 KDLVSWNLVLRGFVE----CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI 231
           K +     VL   V+    CG + +A   F E+PQ DA  ++ +I G     G    A  
Sbjct: 306 KKIERNVKVLTALVDMHAKCGNIEQALSAFREIPQPDAYPYTALISGL-ATHGHEKLALS 364

Query: 232 LFEHMPIK----DLISWNSMIDGYAKIGDLVAAQQLFNEMPE-----RNVFSWSIMIDGY 282
           +FE M ++    D I++  ++   +  G +    + +  M       R    ++ +ID  
Sbjct: 365 VFERMQVQAVKPDPITFVGVLTACSHTGLVDKGLEYWEAMVRDYGIVRRADHYACVIDML 424

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISAC 317
            + G  +EA  + + M   G  P  +  +  +SAC
Sbjct: 425 GRAGRIEEAFEMVQTM-PMGPHPGALGAL--LSAC 456


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 191/590 (32%), Positives = 299/590 (50%), Gaps = 69/590 (11%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKAL----------------------- 97
           ++D AE +F  I +P+ +  N+MI GY+Q   P KAL                       
Sbjct: 196 DVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQ 255

Query: 98  --------SFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
                   + +V M  +G   +  TY  VL AC     L  G  +H  +++M    D+  
Sbjct: 256 HGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVF 315

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG----------EMGKARE 199
            NGLI MY+KCG +  A+ VF+     D +SWN ++ G V  G          +M ++  
Sbjct: 316 GNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSV 375

Query: 200 VFDE--MPQ-------KDAISWSIMIDGYRKKKG-------------------DISSARI 231
           V DE  +P         D  S   ++ GY  K G                   D   A +
Sbjct: 376 VLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADL 435

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           +F  MP+++ ISW +MI  +++ GD+  A+  F+ MPERN+ +W+ M+  Y Q+G  +E 
Sbjct: 436 VFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEG 495

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           L L+  M   GV+PD I+   +I ACA +  + LG  +     +  +++++ V  +++ M
Sbjct: 496 LKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTM 555

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y +CG + EA+  F S+  K++IS+N M+A    NG G + +  F  M       + + +
Sbjct: 556 YSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISY 615

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           + VL  CSH GL  EG   F SM R  GI P  EH+SC+VDLL RAG LEQA +++E MP
Sbjct: 616 VSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMP 675

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
            KPN  +W  LL +CR H ++ LAE   + L+EL  +    YVLLSN+Y+++G  ++   
Sbjct: 676 FKPNATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSEGYVLLSNMYSESGELDNVAD 735

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
           +RK+M+ + I+   G S IE+D  +  F   E    Q +E+ L ++  +K
Sbjct: 736 MRKLMKVKGIRTSRGCSWIEVDNRVHVFTVDETSHPQIKEVYLKLEEMMK 785



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 134/518 (25%), Positives = 229/518 (44%), Gaps = 83/518 (16%)

Query: 45  FTLSQLLMSLTSPNTLNMDQAERLFNQ--IYQPNTYMHNTMIRGYTQSSNPQKALSFYVN 102
           FT + ++ +L S +   M  AE+LF++  +   ++    TMI GY+Q+    ++   +  
Sbjct: 75  FTWNTMIRALVSSS--RMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSL 132

Query: 103 MKRK----GLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYS 158
           M R     G   D +++  V+KACG L       ++H  V K+GF  +  + N ++GMY 
Sbjct: 133 MIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYV 192

Query: 159 KCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDG 218
           KCG +  A +VF   E   L  WN ++ G+ +     KA ++F+ MP++D +SW+ +I  
Sbjct: 193 KCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISI 252

Query: 219 YRK---------------------------------------KKGDISSARIL-FEHMPI 238
           + +                                       K G    ARIL  EH   
Sbjct: 253 FSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHS-- 310

Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
            DL+  N +ID YAK G L  A+++F  + E +  SW+ +I G    G  ++AL LF +M
Sbjct: 311 LDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQM 370

Query: 299 LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
               V  D   +   +  C+       G+ +H +  +S +     V  A+I MY KCG  
Sbjct: 371 RRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDT 430

Query: 359 D-------------------------------EARRIFYSMTKKNVISYNVMIAGLGMNG 387
           D                               +AR  F  M ++N++++N M++    NG
Sbjct: 431 DKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNG 490

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
           F EE LK +  M + G+  D + F   + AC+   +   G ++     +  G+   +   
Sbjct: 491 FSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKF-GLSLNVSVA 549

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
           + +V + SR G +++A N  +S+  K +L  W  +L A
Sbjct: 550 NSIVTMYSRCGLIKEAKNTFDSIDDK-DLISWNAMLAA 586



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/487 (24%), Positives = 215/487 (44%), Gaps = 80/487 (16%)

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           ++H +++  G    +F++N L+ MYS CG    A  VF+ +  +++ +WN ++R  V   
Sbjct: 29  KLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVSSS 88

Query: 193 EMGKAREVFDEMP--QKDAISWSIMIDGYR------------------------------ 220
            M  A ++FDEMP   KD++SW+ MI GY                               
Sbjct: 89  RMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFS 148

Query: 221 -----KKKGDISSARILFEHMPIKDLISW-------NSMIDGYAKIGDLVAAQ------- 261
                K  G +  +R+  +   +   + +       NS++  Y K GD+  A+       
Sbjct: 149 FTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIE 208

Query: 262 ------------------------QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
                                   Q+FN MPER+  SW+ +I  ++QHG   + L +F E
Sbjct: 209 RPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVE 268

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
           M  QG  P+ ++    +SACA    L  G  +H  + R   ++D++    LIDMY KCG 
Sbjct: 269 MCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGC 328

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
           LD A+R+F S+ + + IS+N +I G+   G GE+AL  F QM    +  D+ I   +L  
Sbjct: 329 LDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGV 388

Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
           CS    A+ G  +        G+       + ++ + ++ G+ ++A  +   MP++  ++
Sbjct: 389 CSGPDYASTG-ELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTIS 447

Query: 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537
            W  ++ A     ++  A    + + E    +   +  + + Y   G  E  L++   MR
Sbjct: 448 -WTAMITAFSRSGDIGKARGYFDMMPE---RNIVTWNSMLSTYVQNGFSEEGLKLYVSMR 503

Query: 538 KRKIKKE 544
              ++ +
Sbjct: 504 SNGVQPD 510



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 121/258 (46%), Gaps = 15/258 (5%)

Query: 46  TLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKR 105
           T+S   M      + ++ +A   F+ + + N    N+M+  Y Q+   ++ L  YV+M+ 
Sbjct: 445 TISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRS 504

Query: 106 KGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGC 165
            G+  D  T+   ++AC  L  +  G ++     K G   +V V N ++ MYS+CG +  
Sbjct: 505 NGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKE 564

Query: 166 ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA----ISWSIMIDGYRK 221
           A++ F+  + KDL+SWN +L  F + G   K  + F++M + +     IS+  ++ G   
Sbjct: 565 AKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGC-S 623

Query: 222 KKGDISSARILFEHM-------PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER-NVF 273
             G ++  +  F+ M       P  +  S   M+D   + G L  A+ L   MP + N  
Sbjct: 624 HMGLVAEGKHYFDSMTRVFGISPTNEHFS--CMVDLLGRAGLLEQAKDLIEGMPFKPNAT 681

Query: 274 SWSIMIDGYAQHGNPKEA 291
            WS ++     H + + A
Sbjct: 682 VWSALLGSCRVHHDLRLA 699


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 185/510 (36%), Positives = 286/510 (56%), Gaps = 13/510 (2%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           +A  +F    + N  + N M+  Y Q S+  K+   +  M   G+  + +TYP +L+ C 
Sbjct: 297 EALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCT 356

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
               +  G +IH   +K GF  D++V   LI MYSK G +  AR + E  E KD+VSW  
Sbjct: 357 YAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTS 416

Query: 184 VLRGFVECGEMGKAREVFDEM------PQK----DAISWSIMIDGYRKKKGDISSARILF 233
           ++ G+V+     +A E F +M      P       AIS    I   R+  G    +R+  
Sbjct: 417 MIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQ--GQQIHSRVYV 474

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
                 D+  WN++++ YA+ G    A  LF  +  ++  +W+ M+ G+AQ G  +EAL 
Sbjct: 475 SGYS-ADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALE 533

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           +F +M   GV+ +V + + +ISA A +  +  GK IH  + ++  T +  V  ALI +Y 
Sbjct: 534 VFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYG 593

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCGS+++A+  F+ M+++N +S+N +I     +G+G EAL  F QM+ EG+  +D+ F+G
Sbjct: 594 KCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIG 653

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           VL ACSH GL  EG   F+SM    GI P+ +HY+C+VD+L RAG+L++A   VE MP+ 
Sbjct: 654 VLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVS 713

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
            N  +W TLL ACR H+N+ + E+  + L+EL+  D   YVLLSN YA  G W     +R
Sbjct: 714 ANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVR 773

Query: 534 KMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           KMM+ R ++KE GRS IE+   +  F  G+
Sbjct: 774 KMMKDRGVRKEPGRSWIEVKNVVHAFFVGD 803



 Score =  177 bits (450), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 212/440 (48%), Gaps = 11/440 (2%)

Query: 49  QLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGL 108
            LL+ L +   L + +A R+F Q+   +      M+ GY ++   ++A+  Y  M   G+
Sbjct: 81  NLLIDLYAKKGL-VQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGV 139

Query: 109 LVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARS 168
           +   Y    VL AC       +G  +H +V K G   +  V N LI +Y + G +  A  
Sbjct: 140 VPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAER 199

Query: 169 VFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKG 224
           VF      D V++N ++    +CG    A E+F+EM       D ++ + ++       G
Sbjct: 200 VFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAAC-ASIG 258

Query: 225 DISSARILFEHM----PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMID 280
           D++  + L  ++       D I   S++D Y K G +V A ++F      NV  W++M+ 
Sbjct: 259 DLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLV 318

Query: 281 GYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM 340
            Y Q  +  ++  LF +M+  GVRP+  +    +  C   G ++LG+ IH+   ++    
Sbjct: 319 AYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFES 378

Query: 341 DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME 400
           DM V   LIDMY K G LD+ARRI   +  K+V+S+  MIAG   + F +EAL+ F  M+
Sbjct: 379 DMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQ 438

Query: 401 TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460
             GI  D++     + AC+      +G +I  S     G    +  ++ LV+L +R G  
Sbjct: 439 LFGIWPDNIGLASAISACAGIKAMRQGQQI-HSRVYVSGYSADVSIWNALVNLYARCGRS 497

Query: 461 EQALNIVESMPMKPNLALWG 480
           ++A ++ E++  K  +   G
Sbjct: 498 KEAFSLFEAIEHKDKITWNG 517



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/419 (26%), Positives = 210/419 (50%), Gaps = 12/419 (2%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC-GVLMGLVEGTEIHGEVV 139
           N  + G+    +P+K LS +    R+   + +  +   L+ C G +        IH + +
Sbjct: 10  NKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACALRECRGSVKHWPLVPVIHAKAI 69

Query: 140 KMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKARE 199
             G   D    N LI +Y+K G +  AR VFE    +D VSW  +L G+   G   +A  
Sbjct: 70  TCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVG 129

Query: 200 VFDEM------PQKDAIS--WSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGY 251
           ++ +M      P    +S   S        ++G +  A++ ++     + +  N++I  Y
Sbjct: 130 LYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQV-YKQGSCSETVVGNALIALY 188

Query: 252 AKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
            + G L  A+++F+EMP  +  +++ +I  +AQ GN + AL +F EM   G  PD +++ 
Sbjct: 189 LRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIA 248

Query: 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
             ++ACA +G L+ GK +H ++ ++ ++ D I++ +L+D+Y+KCG + EA  IF S  + 
Sbjct: 249 SLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRT 308

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           NV+ +N+M+   G      ++   F QM   G+  ++  +  +L  C+++G    G +I 
Sbjct: 309 NVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQI- 367

Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
             +    G E  +     L+D+ S+ G L++A  I+E +  K ++  W +++     H+
Sbjct: 368 HLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAK-DVVSWTSMIAGYVQHE 425



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 162/330 (49%), Gaps = 18/330 (5%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D+A R+   +   +     +MI GY Q    ++AL  + +M+  G+  DN      + A
Sbjct: 396 LDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISA 455

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  +  + +G +IH  V   G+  DV + N L+ +Y++CG    A S+FE  E KD ++W
Sbjct: 456 CAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITW 515

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK----------DAISWSIMIDGYRKKKGDISSARI 231
           N ++ GF + G   +A EVF +M Q            +IS S  +     K+G    A +
Sbjct: 516 NGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADI--KQGKQIHATV 573

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           +      +  ++ N++I  Y K G +  A+  F EM ERN  SW+ +I   +QHG   EA
Sbjct: 574 IKTGCTSETEVA-NALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEA 632

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALID 350
           L LF +M  +G++P+ ++ +G ++AC+ VG ++ G  +         I         ++D
Sbjct: 633 LDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVD 692

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMI 380
           +  + G LD AR+    M     +S N M+
Sbjct: 693 ILGRAGQLDRARKFVEEMP----VSANAMV 718


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 178/511 (34%), Positives = 290/511 (56%), Gaps = 18/511 (3%)

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
            ++  ++ N + +N +I G+  +    K   FY  M+ +G++ D YT+P V++ C  +M 
Sbjct: 69  FYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVM- 127

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
             E  +IHG ++KMG   DVFV + L+  Y K G M  A+ VF    I+D+V WN ++ G
Sbjct: 128 --EVKKIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMING 185

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK---KKGDISSARI---LFEHMPIKDL 241
           + + G + +A EVF  M  K        I G       +GD+ + +    +   M     
Sbjct: 186 YAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSG 245

Query: 242 IS-WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
           +S  N++ID Y K   +  A  +F  + E+++FSW+ +I  + Q G+    L LF +ML 
Sbjct: 246 VSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLG 305

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD--------MIVQTALIDMY 352
            G+ PD++++   + AC+ + AL  G+ IH +M  + +  D        ++V  A++DMY
Sbjct: 306 SGILPDLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMY 365

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCGS++ A +IF SM+KK+V S+N+MI G GM+G+  EAL  F+QM       +++  +
Sbjct: 366 AKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLV 425

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
           GVL AC+H+G  + G      M+   G+ P +EHY+C++D+L RAG LE A  IV+ MP+
Sbjct: 426 GVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPI 485

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           + N  +W  LL ACR H N  LAE+    +++L+ + CG YVL+SN+Y   G +E  L +
Sbjct: 486 QANPVVWRALLGACRLHGNAELAEIAARQVLQLEPEHCGSYVLMSNVYGVIGRYEEVLEV 545

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           RK M+++ +KK  G S IE+   +  F +G+
Sbjct: 546 RKTMKEQNVKKTPGCSWIELKDGVHVFRTGD 576



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 177/365 (48%), Gaps = 26/365 (7%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +M+ A+++F ++   +  + N MI GY +     +AL  +  M  KG+    +T   +L 
Sbjct: 160 SMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILS 219

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
                  L  G  +HG V+KMG+   V V N LI MY KC H+G A  +FE    KD+ S
Sbjct: 220 VFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFS 279

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS---ARILFEHM- 236
           WN ++    +CG+      +FD+M     +   + I         +++    R +  +M 
Sbjct: 280 WNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMI 339

Query: 237 -----------PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
                       + +L+  N+++D YAK G +  A ++F+ M +++V SW+IMI GY  H
Sbjct: 340 INGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMH 399

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
           G   EAL +F +M     +P+ ++++G +SAC   G +  G+   +F+ +   T  +I  
Sbjct: 400 GYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGR---LFLAQMESTFGVIPT 456

Query: 346 ----TALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG---FGEEALKCFA 397
               T +IDM  + G L++A  I   M  + N + +  ++    ++G     E A +   
Sbjct: 457 IEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALLGACRLHGNAELAEIAARQVL 516

Query: 398 QMETE 402
           Q+E E
Sbjct: 517 QLEPE 521



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 181/415 (43%), Gaps = 77/415 (18%)

Query: 119 LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF-EGSEIKD 177
           L++C     L +G ++H  ++  GF      +  LI MYSKCG MG A  VF +    ++
Sbjct: 18  LQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERN 77

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDE------MPQK------------------------ 207
           + ++N ++ GFV  G   K  + + +      MP K                        
Sbjct: 78  VFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVKKIHGCLL 137

Query: 208 ------DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQ 261
                 D    S +++ Y  K G +  A+ +F  + I+D++ WN+MI+GYAKIG L    
Sbjct: 138 KMGLELDVFVGSALVNTYL-KNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCL---- 192

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
                                       EAL +FR M  +GV P   ++ G +S  A  G
Sbjct: 193 ---------------------------DEALEVFRRMHVKGVAPSRFTITGILSVFASRG 225

Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
            LD GK +H  + +      + V  ALIDMY KC  + +A  IF  + +K++ S+N +I+
Sbjct: 226 DLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIIS 285

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH-----SGLATEGYRIFQSMKR 436
                G  +  L+ F +M   GI  D +    VL ACSH      G    GY I   + +
Sbjct: 286 VHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMIINGLGK 345

Query: 437 --HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
               G    L   + ++D+ ++ G +  AL I +SM  K ++A W  +++    H
Sbjct: 346 DDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMS-KKDVASWNIMIMGYGMH 399


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 190/514 (36%), Positives = 289/514 (56%), Gaps = 23/514 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           NM  A R+FN+    ++   N+++ GY +  N ++A   Y  M  + ++  N        
Sbjct: 263 NMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMI----- 317

Query: 121 ACGVLMGL----VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG-SEI 175
              VL G+    VE  ++  E+++     D+   + LI  + +      A   F G  +I
Sbjct: 318 ---VLFGMRGLVVEACKLFDEMLEK----DMVTWSALIACFQQNEMYEEAIRTFVGMHKI 370

Query: 176 KDLVSWNLVLRGFVECGE-----MGKAREVFD-EMPQKDAISWSIMIDGYRKKKGDISSA 229
             +V   + +     C       MGK       ++  +  I+    +     K GDI  A
Sbjct: 371 GVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVA 430

Query: 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
           R LF+   + DLISWNSMI GY K   +  A+ +F+ MPE++V SWS MI GYAQ+    
Sbjct: 431 RKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFD 490

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           E L LF+EM   G +PD  +++  ISACA++ AL+ GKW+H ++KR+ +T+++I+ T LI
Sbjct: 491 ETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLI 550

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           DMYMKCG ++ A  +FY M +K + ++N +I GL MNG  E +L  F+ M+   +  +++
Sbjct: 551 DMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEI 610

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            F+GVL AC H GL  EG   F SM     I+P ++HY C+VDLL RAG+L++A  ++  
Sbjct: 611 TFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNR 670

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           MPM P++A WG LL AC+ H +  +   V   L+EL+ D  G +VLLSNIYA  G W+  
Sbjct: 671 MPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDV 730

Query: 530 LRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           L IR MM K ++ K  G S+IE +G I EF++G+
Sbjct: 731 LEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGD 764



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 125/432 (28%), Positives = 214/432 (49%), Gaps = 65/432 (15%)

Query: 85  RGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFL 144
           R Y Q+++P  A + Y +M    L  DNYTYP +++AC +     E  ++H  V+K+GF 
Sbjct: 186 RAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFD 245

Query: 145 CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM 204
            DV+V N LI  +S C +M  A  VF  S + D VSWN +L G++E G + +A+ ++ +M
Sbjct: 246 SDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 305

Query: 205 PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
           P++  I+ + MI  +   +G +  A  LF+ M  KD+++W+++I  +         QQ  
Sbjct: 306 PERSIIASNSMIVLF-GMRGLVVEACKLFDEMLEKDMVTWSALIACF---------QQ-- 353

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
           NEM E                    EA+  F  M   GV  D +  + A+SACA +  ++
Sbjct: 354 NEMYE--------------------EAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVN 393

Query: 325 LGKWIH-----------VFMKRSRITM--------------------DMIVQTALIDMYM 353
           +GK IH           + ++ + I M                    D+I   ++I  Y+
Sbjct: 394 MGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYL 453

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KC  +D A+ IF SM +K+V+S++ MI+G   N   +E L  F +M+  G   D+   + 
Sbjct: 454 KCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVS 513

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           V+ AC+      +G  +   +KR+ G+   +   + L+D+  + G +E AL +   M ++
Sbjct: 514 VISACARLAALEQGKWVHAYIKRN-GLTINVILGTTLIDMYMKCGCVETALEVFYGM-IE 571

Query: 474 PNLALWGTLLLA 485
             ++ W  L+L 
Sbjct: 572 KGISTWNALILG 583



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 144/329 (43%), Gaps = 39/329 (11%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A+ +F+ + + +    ++MI GY Q+    + L+ +  M+  G   D  T   V+ A
Sbjct: 458 VDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISA 517

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L +G  +H  + + G   +V +   LI MY KCG +  A  VF G   K + +W
Sbjct: 518 CARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTW 577

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQ----KDAISWSIMIDGYRK----KKGDISSARILF 233
           N ++ G    G +  + ++F  M +     + I++  ++   R      +G      ++ 
Sbjct: 578 NALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIH 637

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEAL 292
           +H    ++  +  M+D   + G L  A++L N MP   +V +W  ++    +HG+ +   
Sbjct: 638 DHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGR 697

Query: 293 YLFREML------------------CQGVRPDVISVMG--------AISACAQVGALDLG 326
            + R+++                   +G   DV+ + G         I  C+ + A  + 
Sbjct: 698 RVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGV- 756

Query: 327 KWIHVFMKRSRITMDM-IVQTALIDMYMK 354
             IH F+   +   DM  ++  L++M MK
Sbjct: 757 --IHEFLAGDKTHPDMDAIEDMLVEMAMK 783


>gi|356498888|ref|XP_003518279.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Glycine max]
          Length = 552

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 182/551 (33%), Positives = 323/551 (58%), Gaps = 13/551 (2%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEP-----FTLSQLLMSL--TSPNTLNMDQ 64
           K+ L+ LL  +KT  H+ Q  A L    L  +P     + + +LL  +   +    N+  
Sbjct: 4   KHYLMQLLNAAKTIDHLKQTHA-LFLKLLRQQPPHHYHYFMGRLLHQVLRCTGEKTNLCY 62

Query: 65  AERLFNQIYQ-PNTYMHNTMIRGY-TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
           A +LF+ +   P++++  ++IR   +  ++    +S Y  M + G+L   +T+  +L AC
Sbjct: 63  AHQLFDTMPNCPSSFLWTSLIRALLSHQAHLHHCISTYSRMHQNGVLPSGFTFSSILSAC 122

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
           G +  L EG ++H  V++ GF  +  V   L+ MY+K G +  AR+VF+G + +D+V+W 
Sbjct: 123 GRVPALFEGKQVHARVMQSGFHGNKIVQTALLDMYAKSGCISDARAVFDGMDDRDVVAWT 182

Query: 183 LVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLI 242
            ++ G+ + G M  A+ +FD+M ++++ +W+ M+ GY   + D+ +A+ L++ M  K+ +
Sbjct: 183 AMVCGYAKVGMMVDAQWLFDKMGERNSFTWTAMVAGYANCE-DMKTAKKLYDVMNDKNEV 241

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
           +W +MI GY K+G++  A+++F+ +P  +   + + M+  YAQHG  KEA+ ++ +M   
Sbjct: 242 TWVAMIAGYGKLGNVREARRVFDGIPVPQGASACAAMLACYAQHGYAKEAIDMYEKMREA 301

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
            ++   ++++GAISACAQ+  + +   +   ++        IV TALI M+ KCG+++ A
Sbjct: 302 KIKITEVAMVGAISACAQLRDIRMSNTLTGHLEEGCCDRTHIVSTALIHMHSKCGNINLA 361

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
              F +M  ++V +Y+ MIA    +G  ++A+  F +M+ EG+  + + F+GVL AC  S
Sbjct: 362 LSEFTTMRYRDVYTYSAMIAAFAEHGKSQDAIDLFLKMQKEGLKPNQVTFIGVLNACGSS 421

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           G   EG R FQ M    GIEP  EHY+C+VDLL +AG+LE+A ++++      +   WG+
Sbjct: 422 GYIEEGCRFFQIMTGVFGIEPLPEHYTCIVDLLGKAGQLERAYDLIKQNASSADATTWGS 481

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           LL  CR + NV L E+    L E+  +D G YVLL+N YA    WEHA  ++K++ ++ +
Sbjct: 482 LLATCRLYGNVELGEIAARHLFEIDPEDSGNYVLLANTYASKDKWEHAQEVKKLISEKGM 541

Query: 542 KKE-TGRSVIE 551
           KK+ +G S I+
Sbjct: 542 KKKPSGYSSIQ 552


>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 490

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 185/543 (34%), Positives = 285/543 (52%), Gaps = 67/543 (12%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           +++ ++ LL  +KT TH+ QI A    + L      LS  +   TS + +    A  +FN
Sbjct: 8   IESKILHLLHNTKTQTHLPQIHAHFLRHGLHHSNQILSHFVSVCTSLHQI--PYATTIFN 65

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMK-RKGLLVDNYTYPFVLKACGVLMGLV 129
             + PN  + N++I+ ++      ++  F+  MK    +L DN+T+P +LKA   L    
Sbjct: 66  HTHHPNILLFNSIIKAHSSFPPFHQSFHFFNLMKMTHNILPDNFTFPPLLKATSYLRDYD 125

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
            G  +H  V  +GF     V  GL+ +YS C                             
Sbjct: 126 LGQCLHAHVTALGFYRHSPVEIGLLEVYSNC----------------------------- 156

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMID 249
             G+M  A +VFDEM  ++                                ++ WN MI+
Sbjct: 157 --GKMEDANKVFDEMLHRE--------------------------------VVVWNIMIN 182

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
           G+ K+GDL    +LF  M +R+V SW++MI   AQ     EA  +FREML QG  PD  +
Sbjct: 183 GFCKMGDLEIGLKLFKRMGQRSVVSWNLMISCLAQRKKDGEAFGIFREMLEQGFEPDDAT 242

Query: 310 VMGAISACAQVGALDLGKWIHVFMKRSRITMDMI-VQTALIDMYMKCGSLDEARRIFYSM 368
           ++  +  CA++G +D G+WIH +     +   +I V  +L+D Y KCG+L+ A ++F  M
Sbjct: 243 LVTVLPVCARLGDVDAGEWIHSYADGKGLLRKVISVGNSLVDFYCKCGNLEAAWKVFNEM 302

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
           TKKNV+S+N MI+GLG+NG GE  ++ F +M  +G+   D  F+GVL  C+H+G   +G 
Sbjct: 303 TKKNVVSWNAMISGLGLNGKGELGVELFEKMARKGVTPSDSTFVGVLACCAHAGFVDKGR 362

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
            IF SM     + PKLEHY C+VDLL R G +++A +++ +MP+ PN ALWG LL ACR 
Sbjct: 363 EIFDSMTVKFKLSPKLEHYGCVVDLLGRCGHVKEAYDLIRNMPLMPNAALWGALLSACRT 422

Query: 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRS 548
           H +  +AE+  + LV L+  + G YVLLSN+YA+   W    ++R +M+   IKK  G+S
Sbjct: 423 HGDREVAEIAAKELVRLEPGNSGNYVLLSNVYAEERKWNEVEKVRVLMQGVGIKKNPGQS 482

Query: 549 VIE 551
            ++
Sbjct: 483 ALQ 485


>gi|297798072|ref|XP_002866920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312756|gb|EFH43179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 559

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 175/529 (33%), Positives = 294/529 (55%), Gaps = 7/529 (1%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           QI  QL + D++ +   +++++  L          +  L +     +++ +NT++  Y  
Sbjct: 24  QIQTQLISRDILRDELFINKVVTFLGKSADFATYSSVILHSIRSVLSSFSYNTLLSSYAV 83

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
              P+  +  Y      G   D +T+P V KACG   G+ EG +IHG V KMGF  D++V
Sbjct: 84  CDKPRMTIFVYRVFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGTVTKMGFYDDIYV 143

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA 209
            N L+  Y  CG    A  VF+   ++D+VSW  ++ GF   G   +A + F +M  +  
Sbjct: 144 QNSLVHFYGVCGESRNACKVFDQMPVRDVVSWTGIITGFTRTGLYKEALDTFSKMDVEPN 203

Query: 210 ISWSIMIDGYRKKKGDISSAR----ILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
           ++  +       + G +S  +    ++ +   +  L + N++ID Y K   L  A  +F 
Sbjct: 204 LATYVCALVSSGRVGCLSLGKGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMTVFG 263

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREM-LCQGVRPDVISVMGAISACAQVGALD 324
           E+ +++  SW+ MI G        EA+ LF  M    G++PD   +   +SACA +GA+D
Sbjct: 264 ELQKKDKVSWNSMISGLVHCERSNEAIELFSMMQTSSGIKPDGHILTSVLSACASLGAVD 323

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
            G+W+H ++  + I  D  + TA++DMY KCG ++ A +IF  + +KNV ++N ++ GL 
Sbjct: 324 YGRWVHEYVLSAGIKWDTHIGTAIVDMYAKCGYIETALKIFNGIRRKNVFTWNALLGGLA 383

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMK-RHCGIEPK 443
           ++G G E+L+ F +M   G   + + FL +L AC H+GL  EG R F  MK R   + PK
Sbjct: 384 IHGHGHESLRYFEEMVKLGFKPNLVTFLAILNACCHTGLVDEGRRYFHKMKTREYNLSPK 443

Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV-TLAEVVVEGL 502
           LEHY CL+DL  RAG L++AL ++++MP+KP++ + G +L AC++   +  L + +++  
Sbjct: 444 LEHYGCLIDLFCRAGLLDEALELIKAMPVKPDVRICGAVLSACKSRGTLMELPKEILDSF 503

Query: 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
           +E++ +D G+YVLLSNI+A    W+   RIR++M+ + I K  G S IE
Sbjct: 504 LEMEFEDSGVYVLLSNIFAANRRWDDVSRIRRLMKVKGISKVPGSSSIE 552


>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g50270-like [Glycine max]
          Length = 560

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 192/562 (34%), Positives = 313/562 (55%), Gaps = 17/562 (3%)

Query: 4   LAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMD 63
           LA  ++S  N LVSL +  +T     QI + + T+ L +     +  L  L      + +
Sbjct: 2   LALPRWS--NTLVSLFKKHQTLEQCKQIQSIIVTSGLYSTQDNNTLFLTKLLQCVPFSQN 59

Query: 64  QAE---RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           Q      LF+ I  PNT + N MI      S+P  +L  Y  +++KG+  D +T+P +LK
Sbjct: 60  QNTCLLLLFDTINTPNTRLLNKMI---AACSHPHISLLCYAKLRQKGVQPDKHTFPLLLK 116

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
                +       I+ ++ K+GF  D+F+ N LI  ++  G +  AR VF+ S  +D V+
Sbjct: 117 TFSKSIA-QNPFMIYAQIFKLGFDLDLFIGNALIPAFANSGFVESARQVFDESPFQDTVA 175

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK---GDISSAR----ILF 233
           W  ++ G+V+    G+A + F +M  +D    ++ +    +     GD    R       
Sbjct: 176 WTALINGYVKNDCPGEALKCFVKMRLRDRSVDAVTVASILRAAALVGDADFGRWVHGFYV 235

Query: 234 EHMPIK-DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
           E   ++ D   +++++D Y K G    A ++FNE+P R+V  W++++ GY Q    ++AL
Sbjct: 236 EAGRVQLDGYVFSALMDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDAL 295

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
             F +ML   V P+  ++   +SACAQ+GALD G+ +H +++ ++I M++ + TAL+DMY
Sbjct: 296 RAFWDMLSDNVAPNDFTLSSVLSACAQMGALDQGRLVHQYIECNKINMNVTLGTALVDMY 355

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCGS+DEA R+F +M  KNV ++ V+I GL ++G    AL  F  M   GI  +++ F+
Sbjct: 356 AKCGSIDEALRVFENMPVKNVYTWTVIINGLAVHGDALGALNIFCCMLKSGIQPNEVTFV 415

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
           GVL ACSH G   EG R+F+ MK    ++P+++HY C+VD+L RAG LE A  I+++MPM
Sbjct: 416 GVLAACSHGGFVEEGKRLFELMKHAYHLKPEMDHYGCMVDMLGRAGYLEDAKQIIDNMPM 475

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           KP+  + G L  AC  H+   + E +   LV  + +  G Y LL+N+Y     WE A ++
Sbjct: 476 KPSPGVLGALFGACLVHKAFEMGEHIGNLLVNQQPNHSGSYALLANLYKMCQNWEAAAQV 535

Query: 533 RKMMRKRKIKKETGRSVIEIDG 554
           RK+M+  ++ K  G S IE+DG
Sbjct: 536 RKLMKGLRVVKAPGYSRIEVDG 557


>gi|255560453|ref|XP_002521241.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539509|gb|EEF41097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 662

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 183/512 (35%), Positives = 293/512 (57%), Gaps = 34/512 (6%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           MD+A  LFN + + N+   N M+ G+ Q+ +  +A+ F+  M  +           V   
Sbjct: 159 MDEALGLFNTMPEKNSVSWNAMVSGFLQNGDVVRAIEFFKRMPERD----------VTSL 208

Query: 122 CGVLMGLVEGTEI-HGEVVKMGFLCD-------VFVVNGLIGMYSKCGHMGCARSVFE-- 171
             ++ GL++ +E+   E + + +  +       V   N LI  Y + G +  A+++F+  
Sbjct: 209 SALVSGLIQNSELDQAERILLDYGNNGGSKEYLVHAYNTLIAGYGQRGRVDEAQNLFDKI 268

Query: 172 -----------GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR 220
                      G   +++VSWN ++  +V+ G++  AR++FD+MP +D+ SW+ MI GY 
Sbjct: 269 PFYNDQGKGRTGRFERNVVSWNTMIMCYVKAGDVISARKLFDQMPDRDSFSWNTMISGYV 328

Query: 221 KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMID 280
               D+  A  LF  MP  D +SWN MI GYA+ G L  A   F  MP++N+ SW+ +I 
Sbjct: 329 HVL-DMEEASNLFHKMPSPDTLSWNLMISGYAQSGSLELAHDFFERMPQKNLVSWNSVIA 387

Query: 281 GYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM 340
           GY ++G+   A+ LF +M  +G + D  ++   +S  + +  L LG  IH  + ++ I  
Sbjct: 388 GYEKNGDYIGAINLFIQMQVEGEKSDRHTLSSLLSVSSGIVDLQLGMQIHQLVSKTVIP- 446

Query: 341 DMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
           D+ +  ALI MY +CG++ EAR IFY M  +K VIS+N MI G   +G+  EAL+ F  M
Sbjct: 447 DVPLNNALITMYSRCGAIFEARTIFYEMKLQKEVISWNAMIGGYASHGYATEALELFKLM 506

Query: 400 ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
            +  +    + F+ VL AC+H+GL  EG RIF+SM    G+EP++EH++ LVD++ R G+
Sbjct: 507 RSFKVQPTYITFISVLNACAHAGLVEEGRRIFESMVSDYGVEPRVEHFASLVDIVGRQGQ 566

Query: 460 LEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519
           LE+AL+++ SM ++P+ A+WG LL A R H NV +A V  E L++L+ D    Y+LL N+
Sbjct: 567 LEEALDLINSMTIEPDKAVWGALLGASRVHNNVEMARVAAEALMKLEPDSSVPYILLYNM 626

Query: 520 YADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
           Y D G W++A  IR MM +  IKKE   S ++
Sbjct: 627 YVDVGQWDNAAEIRSMMERNNIKKEAAISWVD 658



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/356 (30%), Positives = 182/356 (51%), Gaps = 31/356 (8%)

Query: 145 CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM 204
            +++  N  I  +++ G +  AR++F+  E ++ V+WN ++ G+V+ GEM KAR++FDEM
Sbjct: 45  SNLYSSNKKISHFTRTGRINEARALFDKLERRNTVTWNSMISGYVKRGEMTKARKLFDEM 104

Query: 205 PQKDAISWSIMIDGYRKKKGD--ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQ 262
           P++D +SW+++I GY   +G   I   R LF+ MP +  +SWN+MI GYAK G +  A  
Sbjct: 105 PERDVVSWNLIISGYVSCRGKRFIEEGRNLFDKMPERCCVSWNTMISGYAKNGRMDEALG 164

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           LFN MPE+N  SW+ M+ G+ Q+G+   A+  F+ M  +    DV S+   +S   Q   
Sbjct: 165 LFNTMPEKNSVSWNAMVSGFLQNGDVVRAIEFFKRMPER----DVTSLSALVSGLIQNSE 220

Query: 323 LDLGKWIHVFMKRSRITMDMIVQ--TALIDMYMKCGSLDEARRIFYSMT----------- 369
           LD  + I +    +  + + +V     LI  Y + G +DEA+ +F  +            
Sbjct: 221 LDQAERILLDYGNNGGSKEYLVHAYNTLIAGYGQRGRVDEAQNLFDKIPFYNDQGKGRTG 280

Query: 370 --KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
             ++NV+S+N MI      G    A K F QM      +D   +  ++    H     E 
Sbjct: 281 RFERNVVSWNTMIMCYVKAGDVISARKLFDQMPD----RDSFSWNTMISGYVHVLDMEEA 336

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             +F  M       P    ++ ++   +++G LE A +  E MP K NL  W +++
Sbjct: 337 SNLFHKMP-----SPDTLSWNLMISGYAQSGSLELAHDFFERMPQK-NLVSWNSVI 386



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 136/533 (25%), Positives = 229/533 (42%), Gaps = 106/533 (19%)

Query: 59  TLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK-----GLLVDNY 113
           T  +++A  LF+++ + NT   N+MI GY +     KA   +  M  +      L++  Y
Sbjct: 60  TGRINEARALFDKLERRNTVTWNSMISGYVKRGEMTKARKLFDEMPERDVVSWNLIISGY 119

Query: 114 TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS 173
                  +C     + EG  +     KM   C V   N +I  Y+K G M  A  +F   
Sbjct: 120 V------SCRGKRFIEEGRNLFD---KMPERCCV-SWNTMISGYAKNGRMDEALGLFNTM 169

Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK------------ 221
             K+ VSWN ++ GF++ G++ +A E F  MP++D  S S ++ G  +            
Sbjct: 170 PEKNSVSWNAMVSGFLQNGDVVRAIEFFKRMPERDVTSLSALVSGLIQNSELDQAERILL 229

Query: 222 ------------------------KKGDISSARILFEHMPI-------------KDLISW 244
                                   ++G +  A+ LF+ +P              ++++SW
Sbjct: 230 DYGNNGGSKEYLVHAYNTLIAGYGQRGRVDEAQNLFDKIPFYNDQGKGRTGRFERNVVSW 289

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           N+MI  Y K GD+++A++LF++MP+R+ FSW+ MI GY    + +EA  LF +M      
Sbjct: 290 NTMIMCYVKAGDVISARKLFDQMPDRDSFSWNTMISGYVHVLDMEEASNLFHKMPS---- 345

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           PD +S    IS  AQ G+L+L    H F +R                             
Sbjct: 346 PDTLSWNLMISGYAQSGSLELA---HDFFER----------------------------- 373

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
              M +KN++S+N +IAG   NG    A+  F QM+ EG   D      +L   S     
Sbjct: 374 ---MPQKNLVSWNSVIAGYEKNGDYIGAINLFIQMQVEGEKSDRHTLSSLLSVSSGIVDL 430

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
             G +I Q + +   + P +   + L+ + SR G + +A  I   M ++  +  W  ++ 
Sbjct: 431 QLGMQIHQLVSK--TVIPDVPLNNALITMYSRCGAIFEARTIFYEMKLQKEVISWNAMIG 488

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGL-YVLLSNIYADAGMWEHALRIRKMM 536
              +H   T A  + + +   K     + ++ + N  A AG+ E   RI + M
Sbjct: 489 GYASHGYATEALELFKLMRSFKVQPTYITFISVLNACAHAGLVEEGRRIFESM 541



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 160/362 (44%), Gaps = 57/362 (15%)

Query: 27  HILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRG 86
           H+L +         +  P TLS  LM      + +++ A   F ++ Q N    N++I G
Sbjct: 329 HVLDMEEASNLFHKMPSPDTLSWNLMISGYAQSGSLELAHDFFERMPQKNLVSWNSVIAG 388

Query: 87  YTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCD 146
           Y ++ +   A++ ++ M+ +G   D +T   +L     ++ L  G +IH ++V    + D
Sbjct: 389 YEKNGDYIGAINLFIQMQVEGEKSDRHTLSSLLSVSSGIVDLQLGMQIH-QLVSKTVIPD 447

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEI-KDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           V + N LI MYS+CG +  AR++F   ++ K+++SWN ++ G+   G   +A E+F  M 
Sbjct: 448 VPLNNALITMYSRCGAIFEARTIFYEMKLQKEVISWNAMIGGYASHGYATEALELFKLMR 507

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
                                      F+  P    I++ S+++  A  G +   +++F 
Sbjct: 508 S--------------------------FKVQPT--YITFISVLNACAHAGLVEEGRRIFE 539

Query: 266 EM-----PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
            M      E  V  ++ ++D   + G  +EAL L   M    + PD  +V GA+   ++V
Sbjct: 540 SMVSDYGVEPRVEHFASLVDIVGRQGQLEEALDLINSMT---IEPDK-AVWGALLGASRV 595

Query: 321 GALDLGKWIHVFMKRSRITMDMIVQTA---------LIDMYMKCGSLDEARRIFYSMTKK 371
                    H  ++ +R+  + +++           L +MY+  G  D A  I   M + 
Sbjct: 596 ---------HNNVEMARVAAEALMKLEPDSSVPYILLYNMYVDVGQWDNAAEIRSMMERN 646

Query: 372 NV 373
           N+
Sbjct: 647 NI 648


>gi|12324033|gb|AAG51982.1|AC024260_20 hypothetical protein; 70922-66390 [Arabidopsis thaliana]
          Length = 839

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 178/511 (34%), Positives = 288/511 (56%), Gaps = 33/511 (6%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKG-LLVDNYTYPFVLKACG 123
           A  LF+++ + N      MI GY ++   +     ++ M+++G + V++ T   + KAC 
Sbjct: 227 ARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACR 286

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
             +   EG++IHG V +M    D+F+ N L+ MYSK G+M                    
Sbjct: 287 DFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYM-------------------- 326

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243
                      G+A+ VF  M  KD++SW+ +I G  ++K  IS A  LFE MP KD++S
Sbjct: 327 -----------GEAKAVFGVMKNKDSVSWNSLITGLVQRK-QISEAYELFEKMPGKDMVS 374

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
           W  MI G++  G++    +LF  MPE++  +W+ MI  +  +G  +EAL  F +ML + V
Sbjct: 375 WTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEV 434

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
            P+  +    +SA A +  L  G  IH  + +  I  D+ VQ +L+ MY KCG+ ++A +
Sbjct: 435 CPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYK 494

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           IF  +++ N++SYN MI+G   NGFG++ALK F+ +E+ G   + + FL +L AC H G 
Sbjct: 495 IFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGY 554

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
              G++ F+SMK    IEP  +HY+C+VDLL R+G L+ A N++ +MP KP+  +WG+LL
Sbjct: 555 VDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLL 614

Query: 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
            A + H  V LAE+  + L+EL+ D    YV+LS +Y+  G      RI  + + ++IKK
Sbjct: 615 SASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKK 674

Query: 544 ETGRSVIEIDGNIKEFVSGEIFDVQSEELEL 574
           + G S I + G +  F++G+   +  EE+ +
Sbjct: 675 DPGSSWIILKGEVHNFLAGDESQLNLEEIAI 705



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 168/359 (46%), Gaps = 44/359 (12%)

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
           +F  N  I  +++ G++  A ++F     + +VSW  ++  + E G+M KA +VFDEMP 
Sbjct: 50  IFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPV 109

Query: 207 KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNE 266
           +   S++ MI    K K D+  A  LF  +P K+ +S+ +MI G+ + G    A+ L+ E
Sbjct: 110 RVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAE 169

Query: 267 MPE--RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
            P   R+  + ++++ GY + G   EA+ +F+ M  +    +V+S               
Sbjct: 170 TPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVK----EVVSC-------------- 211

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
                                ++++  Y K G + +AR +F  MT++NVI++  MI G  
Sbjct: 212 ---------------------SSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYF 250

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLI-ACSHSGLATEGYRIFQSMKRHCGIEPK 443
             GF E+    F +M  EG  K +   L V+  AC       EG +I   + R   +E  
Sbjct: 251 KAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRM-PLEFD 309

Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
           L   + L+ + S+ G + +A  +   M  K +++ W +L+      + ++ A  + E +
Sbjct: 310 LFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVS-WNSLITGLVQRKQISEAYELFEKM 367



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N + A ++F+ I +PN   +NTMI GY+ +   +KAL  +  ++  G   +  T+  +L 
Sbjct: 488 NTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLS 547

Query: 121 ACGVLMGLVE 130
           AC V +G V+
Sbjct: 548 AC-VHVGYVD 556


>gi|356507694|ref|XP_003522599.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Glycine max]
          Length = 535

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 196/542 (36%), Positives = 301/542 (55%), Gaps = 29/542 (5%)

Query: 20  QISKTTTHILQILAQLTTNDLITE-------PFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           +IS  T H+  +L       +IT+       PFT   +  S  SP   N+  A  LF Q 
Sbjct: 7   RISCMTQHLCSMLELKQVQAIITKAGLHSHLPFTAKLIFFSALSPMG-NLSHAHSLFLQT 65

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
              N+++ NTMIR +  SS P +AL  Y +M    ++ D++TY FVLKAC          
Sbjct: 66  SMHNSFICNTMIRAFANSSYPLQALYIYNHMHTTNVVSDHFTYNFVLKACS------RAH 119

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           +   E VK    CD F++       SK G + C  +V +    +D    N +L  + +CG
Sbjct: 120 KFAQEFVK----CDEFII------ISKGGEVHC--TVLKLGLDQDPSIQNSLLCMYSQCG 167

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA 252
            +  A+ +FDE+  +  +SW+IMI  Y  +  D  SA  L E MP K+++SWN++I  Y 
Sbjct: 168 LVHVAQHLFDEISNRSLVSWNIMISAY-DRVNDSKSADYLLESMPHKNVVSWNTVIGRYI 226

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
           ++GD+  A+++F  MP+R+  SW+ +I G     + + A+ LF EM    VRP  ++++ 
Sbjct: 227 RLGDIEGARRVFQIMPQRDAVSWNSLIAGCVSVKDYEGAMGLFSEMQNAEVRPTEVTLIS 286

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
            + ACA+ GAL++G  IH  +K     ++  +  AL++MY KCG L+ A  +F  M  K 
Sbjct: 287 VLGACAETGALEMGSKIHESLKACGHKIEGYLGNALLNMYSKCGKLNSAWEVFNGMRIKT 346

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMET--EGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           +  +N MI GL ++G+ EEAL+ F++ME+  + +  + + FLGVLIACSH GL  +    
Sbjct: 347 LSCWNAMIVGLAVHGYCEEALQLFSEMESGLDTVRPNRVTFLGVLIACSHKGLVDKARWN 406

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
           F  M +   I P ++HY C+VDLLSR G LE+A  ++++ P++ +  LW TLL ACR   
Sbjct: 407 FDHMAKQYKILPDIKHYGCIVDLLSRFGLLEEAHQMIKTAPLQNSAILWRTLLGACRTQG 466

Query: 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           NV LA+V  + L +L     G YVLLSNIYA+A  W+   R+R  M    + K+   S I
Sbjct: 467 NVELAKVSFQQLAKLGRLTDGDYVLLSNIYAEAERWDEVERVRSEMIGLHVPKQVAYSQI 526

Query: 551 EI 552
           ++
Sbjct: 527 DM 528


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 172/520 (33%), Positives = 297/520 (57%), Gaps = 11/520 (2%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A R F+++   +    N M+ G  +++   +A+  +  M  +G+  D  T   VL  C +
Sbjct: 123 AYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVL 182

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L        +H   VK G   ++FV N +I +Y K G +   R VF+G   +DLV+WN +
Sbjct: 183 LGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSI 242

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIM----IDGYRKKKGDISSARILFEHM---- 236
           + G  + G++  A E+F  M +   +S  ++    +     + GDI   R +  +M    
Sbjct: 243 ISGHEQGGQVASAVEMFCGM-RDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRG 301

Query: 237 -PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
             + D+I+ N+++D YAK+  + AAQ++F+ MP R+  SW+ +I GY Q+G   EA++++
Sbjct: 302 WDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVY 361

Query: 296 REML-CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
             M   +G++P   + +  + A + +GAL  G  +H    ++ + +D+ V T +ID+Y K
Sbjct: 362 DHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAK 421

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG LDEA  +F    +++   +N +I+G+G++G G +AL  F+QM+ EGI  D + F+ +
Sbjct: 422 CGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSL 481

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L ACSH+GL  +G   F  M+   GI+P  +HY+C+VD+  RAG+L+ A + + +MP+KP
Sbjct: 482 LAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKP 541

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           + A+WG LL ACR H NV + +V  + L EL   + G YVL+SN+YA  G W+    +R 
Sbjct: 542 DSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRS 601

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELEL 574
           ++R++ ++K  G S IE+  ++  F SG   ++  +  E+
Sbjct: 602 LVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEI 641



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 193/377 (51%), Gaps = 22/377 (5%)

Query: 111 DNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFL-CDVFVVNGLIGMYSKCGHMGCARSV 169
           D +T+P +L+A     G     ++H   +++G L  D F    L+  Y + G +  A   
Sbjct: 70  DAFTFPPLLRAA---QGPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRA 126

Query: 170 FEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMID-----GYR 220
           F+    +D+ +WN +L G        +A  +F  M  +    DA++ S ++      G R
Sbjct: 127 FDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDR 186

Query: 221 KKKGDISSARILF--EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM 278
                ++ A  L+  +H    +L   N+MID Y K+G L   +++F+ M  R++ +W+ +
Sbjct: 187 A----LALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSI 242

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM-KRSR 337
           I G+ Q G    A+ +F  M   GV PDV++++   SA AQ G +  G+ +H +M +R  
Sbjct: 243 ISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGW 302

Query: 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFA 397
              D+I   A++DMY K   ++ A+R+F SM  ++ +S+N +I G   NG   EA+  + 
Sbjct: 303 DVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYD 362

Query: 398 QMET-EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456
            M+  EG+      F+ VL A SH G   +G R+  ++    G+   +   +C++DL ++
Sbjct: 363 HMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRM-HALSIKTGLNLDVYVGTCVIDLYAK 421

Query: 457 AGELEQALNIVESMPMK 473
            G+L++A+ + E  P +
Sbjct: 422 CGKLDEAMLLFEQTPRR 438



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 126/244 (51%), Gaps = 1/244 (0%)

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           D  +  +++  Y + G +  A + F+EM  R+V +W+ M+ G  ++    EA+ LF  M+
Sbjct: 103 DAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMV 162

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
            +GV  D ++V   +  C  +G   L   +H++  +  +  ++ V  A+ID+Y K G L+
Sbjct: 163 MEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLE 222

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           E R++F  M+ ++++++N +I+G    G    A++ F  M   G+  D L  L +  A +
Sbjct: 223 EVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIA 282

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
             G    G  +   M R       +   + +VD+ ++  ++E A  + +SMP++  ++ W
Sbjct: 283 QCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVS-W 341

Query: 480 GTLL 483
            TL+
Sbjct: 342 NTLI 345



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 109/237 (45%), Gaps = 12/237 (5%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM-KRKGLLVDNYTYPFVLK 120
           ++ A+R+F+ +   +    NT+I GY Q+    +A+  Y +M K +GL     T+  VL 
Sbjct: 323 IEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLP 382

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           A   L  L +GT +H   +K G   DV+V   +I +Y+KCG +  A  +FE +  +    
Sbjct: 383 AYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGP 442

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHM 236
           WN V+ G    G   KA  +F +M Q+    D +++  ++       G +   R  F  M
Sbjct: 443 WNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAAC-SHAGLVDQGRNFFNMM 501

Query: 237 P----IKDLIS-WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
                IK +   +  M+D + + G L  A      MP + +   W  ++     HGN
Sbjct: 502 QTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGN 558



 Score = 40.0 bits (92), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 9/194 (4%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D+A  LF Q  + +T   N +I G     +  KALS +  M+++G+  D+ T+  +L A
Sbjct: 425 LDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAA 484

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVN--GLIGMYSKCGHMGCARSVFEGSEIK-DL 178
           C    GLV+       +++  +       +   ++ M+ + G +  A        IK D 
Sbjct: 485 CS-HAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDS 543

Query: 179 VSWNLVLRGFVECG--EMGK-AREVFDEMPQKDAISWSIMIDGYRK--KKGDISSARILF 233
             W  +L      G  EMGK A +   E+  K+   + +M + Y K  K   +   R L 
Sbjct: 544 AIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLV 603

Query: 234 EHMPIKDLISWNSM 247
               ++    W+S+
Sbjct: 604 RRQNLQKTPGWSSI 617


>gi|334183275|ref|NP_175765.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806499|sp|Q9C8L6.2|PPR80_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g53600, mitochondrial; Flags: Precursor
 gi|332194847|gb|AEE32968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 717

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 178/514 (34%), Positives = 289/514 (56%), Gaps = 33/514 (6%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKG-LLVDNYTYPFVLKACG 123
           A  LF+++ + N      MI GY ++   +     ++ M+++G + V++ T   + KAC 
Sbjct: 227 ARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACR 286

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
             +   EG++IHG V +M    D+F+ N L+ MYSK G+M                    
Sbjct: 287 DFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYM-------------------- 326

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243
                      G+A+ VF  M  KD++SW+ +I G  ++K  IS A  LFE MP KD++S
Sbjct: 327 -----------GEAKAVFGVMKNKDSVSWNSLITGLVQRK-QISEAYELFEKMPGKDMVS 374

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
           W  MI G++  G++    +LF  MPE++  +W+ MI  +  +G  +EAL  F +ML + V
Sbjct: 375 WTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEV 434

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
            P+  +    +SA A +  L  G  IH  + +  I  D+ VQ +L+ MY KCG+ ++A +
Sbjct: 435 CPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYK 494

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           IF  +++ N++SYN MI+G   NGFG++ALK F+ +E+ G   + + FL +L AC H G 
Sbjct: 495 IFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGY 554

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
              G++ F+SMK    IEP  +HY+C+VDLL R+G L+ A N++ +MP KP+  +WG+LL
Sbjct: 555 VDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLL 614

Query: 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
            A + H  V LAE+  + L+EL+ D    YV+LS +Y+  G      RI  + + ++IKK
Sbjct: 615 SASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKK 674

Query: 544 ETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           + G S I + G +  F++G+   +  EE+   ++
Sbjct: 675 DPGSSWIILKGEVHNFLAGDESQLNLEEIGFTLK 708



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 168/359 (46%), Gaps = 44/359 (12%)

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
           +F  N  I  +++ G++  A ++F     + +VSW  ++  + E G+M KA +VFDEMP 
Sbjct: 50  IFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPV 109

Query: 207 KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNE 266
           +   S++ MI    K K D+  A  LF  +P K+ +S+ +MI G+ + G    A+ L+ E
Sbjct: 110 RVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAE 169

Query: 267 MPE--RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
            P   R+  + ++++ GY + G   EA+ +F+ M  +    +V+S               
Sbjct: 170 TPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVK----EVVSC-------------- 211

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
                                ++++  Y K G + +AR +F  MT++NVI++  MI G  
Sbjct: 212 ---------------------SSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYF 250

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLI-ACSHSGLATEGYRIFQSMKRHCGIEPK 443
             GF E+    F +M  EG  K +   L V+  AC       EG +I   + R   +E  
Sbjct: 251 KAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRM-PLEFD 309

Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
           L   + L+ + S+ G + +A  +   M  K +++ W +L+      + ++ A  + E +
Sbjct: 310 LFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVS-WNSLITGLVQRKQISEAYELFEKM 367



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N + A ++F+ I +PN   +NTMI GY+ +   +KAL  +  ++  G   +  T+  +L 
Sbjct: 488 NTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLS 547

Query: 121 ACGVLMGLVE 130
           AC V +G V+
Sbjct: 548 AC-VHVGYVD 556


>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
          Length = 746

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 177/499 (35%), Positives = 288/499 (57%), Gaps = 12/499 (2%)

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           P  + +N  IR +  SS P  +L  +++M R  +  D+YT PF+L A             
Sbjct: 116 PTAFSYNVAIR-FFASSRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAA 174

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           H  + K+G       V+ LI MYS     G AR VF+G   +D+VSWN +++ +   G  
Sbjct: 175 HALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMN 234

Query: 195 GKAREVFDEMPQKDAISWSIMIDGYR----KKKGDISSARILFE-----HMPIKDLISWN 245
           G+   +F +M ++  ++ + +         + +GD+   R + E      M +  L+  +
Sbjct: 235 GEVGRMFRDMVKEGTVAPNAVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVG-S 293

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           +++  Y K G++  A+++F+ + ++++ +W+ MI GYAQ+G   EA+ LF  M   G+RP
Sbjct: 294 ALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRP 353

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D I++ G +SAC+ VGAL+LG  +  +  R  +  ++ V TAL+DMY KCG LD+A  +F
Sbjct: 354 DKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVF 413

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET-EGIPKDDLIFLGVLIACSHSGLA 424
             M  KNV S+N +I GL  NG G+EA++ F  M   EG+  DD+ F+GVL AC H+GL 
Sbjct: 414 RKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLV 473

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            +G R F S+     I PK+EHYSC+VDLL+R+G LE+A + +E +P K +  + G LL 
Sbjct: 474 KDGKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLA 533

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           ACR  +NV + E V+  +++L+  +   YV+ S IYA +   + + ++R +MR+R + K 
Sbjct: 534 ACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKT 593

Query: 545 TGRSVIEIDGNIKEFVSGE 563
            G S +E+ G + EF +G+
Sbjct: 594 PGCSWVEVSGKVLEFYAGD 612


>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
          Length = 746

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 177/499 (35%), Positives = 289/499 (57%), Gaps = 12/499 (2%)

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           P  + +N  IR +  SS P  +L  +++M R  +  D+YT PF+L A             
Sbjct: 116 PTAFSYNVAIR-FFASSRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAA 174

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           H  + K+G       V+ LI MYS     G AR VF+G   +D+VSWN +++ +   G  
Sbjct: 175 HALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMN 234

Query: 195 GKAREVFDEMPQKDAISWSIMIDGYR----KKKGDISSARILFE-----HMPIKDLISWN 245
           G+   +F +M ++  ++ +++         + +GD+   R + E      M +  L+  +
Sbjct: 235 GEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVG-S 293

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           +++  Y K G++  A+++F+ + ++++ +W+ MI GYAQ+G   EA+ LF  M   G+RP
Sbjct: 294 ALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRP 353

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D I++ G +SAC+ VGAL+LG  +  +  R  +  ++ V TAL+DMY KCG LD+A  +F
Sbjct: 354 DKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVF 413

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET-EGIPKDDLIFLGVLIACSHSGLA 424
             M  KNV S+N +I GL  NG G+EA++ F  M   EG+  DD+ F+GVL AC H+GL 
Sbjct: 414 RKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLV 473

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            +G R F S+     I PK+EHYSC+VDLL+R+G LE+A + +E +P K +  + G LL 
Sbjct: 474 KDGKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLA 533

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           ACR  +NV + E V+  +++L+  +   YV+ S IYA +   + + ++R +MR+R + K 
Sbjct: 534 ACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKT 593

Query: 545 TGRSVIEIDGNIKEFVSGE 563
            G S +E+ G + EF +G+
Sbjct: 594 PGCSWVEVSGKVLEFYAGD 612


>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
          Length = 491

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 162/365 (44%), Positives = 235/365 (64%), Gaps = 5/365 (1%)

Query: 216 IDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
           I G   K+G +  AR++F++M   + ++WN+MIDGY + G +  A ++F++MPER++ SW
Sbjct: 106 IIGMYSKRGHVKKARLVFDYMEDINSVTWNTMIDGYMRSGQVDNAVKMFDKMPERDLISW 165

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
           + MI+G+ + G  +EAL  FREM   GVRPD ++++ A++AC  +GAL  G W+H ++  
Sbjct: 166 TAMINGFVKKGFHEEALVWFREMQISGVRPDYVAIIAALNACTNLGALSFGLWVHRYVMN 225

Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
                ++ V  +LID+Y +CG ++ AR +F  M K+ V+S+N +I G   NG   E+L  
Sbjct: 226 QDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVY 285

Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           F +M+ EG   D + F G L ACSH GL  EG R FQ+MKR  GI P++EHY CLVDL S
Sbjct: 286 FRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYGISPRIEHYGCLVDLYS 345

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT-LAEVVVEGLVELKADDCGLYV 514
           RAG LE AL ++ESMPMKPN  + G+LL ACR H N T LAE +++ L +L       YV
Sbjct: 346 RAGRLEDALKVIESMPMKPNEVVIGSLLAACRTHGNNTVLAERLMKHLSDLNVKSHSNYV 405

Query: 515 LLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQS----E 570
           +LSN+YA  G WE A ++R+ M+   +KK+ G S IEID     F++G+   V++    E
Sbjct: 406 ILSNMYAADGKWEGASQMRRKMKGLGLKKQPGFSSIEIDDCTHVFMAGDSAHVETAIIRE 465

Query: 571 ELELV 575
            LELV
Sbjct: 466 VLELV 470



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 182/366 (49%), Gaps = 51/366 (13%)

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
            NQ     T    + I   T++    +A   + +M+  G+  ++ T+  +L  CG     
Sbjct: 19  LNQSTSETTVSWTSRITLLTRNGRLAEAAKXFSDMRLSGVEPNHITFIALLSGCG---DF 75

Query: 129 VEGTE-----IHGEVVKMGF-LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
             G+E     +HG   K+G     V V   +IGMYSK GH+  AR VF+  E  + V+WN
Sbjct: 76  PSGSETLSNLLHGYACKLGLDRTHVMVGTAIIGMYSKRGHVKKARLVFDYMEDINSVTWN 135

Query: 183 LVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK--- 239
            ++ G++  G++  A ++FD+MP++D ISW+ MI+G+  KKG    A + F  M I    
Sbjct: 136 TMIDGYMRSGQVDNAVKMFDKMPERDLISWTAMINGF-VKKGFHEEALVWFREMQISGVR 194

Query: 240 -DLIS------------------W-----------------NSMIDGYAKIGDLVAAQQL 263
            D ++                  W                 NS+ID Y + G +  A+++
Sbjct: 195 PDYVAIIAALNACTNLGALSFGLWVHRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFAREV 254

Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL 323
           F++M +R V SW+ +I G+A +GN  E+L  FR+M  +G +PD ++  GA++AC+ VG +
Sbjct: 255 FDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLV 314

Query: 324 DLGKWIHVFMKRSR-ITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIA 381
           + G      MKR   I+  +     L+D+Y + G L++A ++  SM  K N +    ++A
Sbjct: 315 EEGLRYFQTMKRDYGISPRIEHYGCLVDLYSRAGRLEDALKVIESMPMKPNEVVIGSLLA 374

Query: 382 GLGMNG 387
               +G
Sbjct: 375 ACRTHG 380



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 132/318 (41%), Gaps = 49/318 (15%)

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV- 320
           Q  N+       SW+  I    ++G   EA   F +M   GV P+ I+ +  +S C    
Sbjct: 17  QRLNQSTSETTVSWTSRITLLTRNGRLAEAAKXFSDMRLSGVEPNHITFIALLSGCGDFP 76

Query: 321 -GALDLGKWIHVF--------------------------MKRSRITMDM------IVQTA 347
            G+  L   +H +                          +K++R+  D       +    
Sbjct: 77  SGSETLSNLLHGYACKLGLDRTHVMVGTAIIGMYSKRGHVKKARLVFDYMEDINSVTWNT 136

Query: 348 LIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407
           +ID YM+ G +D A ++F  M ++++IS+  MI G    GF EEAL  F +M+  G+  D
Sbjct: 137 MIDGYMRSGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQISGVRPD 196

Query: 408 DLIFLGVLIACSHSGLATEG-----YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
            +  +  L AC++ G  + G     Y + Q  K +  +       + L+DL  R G +E 
Sbjct: 197 YVAIIAALNACTNLGALSFGLWVHRYVMNQDFKNNVRVS------NSLIDLYCRCGCVEF 250

Query: 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLSNIY 520
           A  + + M  K  +  W ++++    + N   + V    + E   K D       L+   
Sbjct: 251 AREVFDKME-KRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTAC- 308

Query: 521 ADAGMWEHALRIRKMMRK 538
           +  G+ E  LR  + M++
Sbjct: 309 SHVGLVEEGLRYFQTMKR 326



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 102/216 (47%), Gaps = 10/216 (4%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A ++F+++ + +      MI G+ +    ++AL ++  M+  G+  D       L A
Sbjct: 147 VDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQISGVRPDYVAIIAALNA 206

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G  +H  V+   F  +V V N LI +Y +CG +  AR VF+  E + +VSW
Sbjct: 207 CTNLGALSFGLWVHRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSW 266

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMP 237
           N V+ GF   G   ++   F +M ++    DA++++  +       G +      F+ M 
Sbjct: 267 NSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTAC-SHVGLVEEGLRYFQTMK 325

Query: 238 IKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP 268
               IS     +  ++D Y++ G L  A ++   MP
Sbjct: 326 RDYGISPRIEHYGCLVDLYSRAGRLEDALKVIESMP 361


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 185/526 (35%), Positives = 295/526 (56%), Gaps = 13/526 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ A+ LF  +   +    N+++ GY Q  N ++ L   + MK  G+  D  T+  ++ A
Sbjct: 197 VEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSA 256

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
             +   L  G  +HG +++ G   D  +   LIGMY KCG++  A  +FEG   KD++SW
Sbjct: 257 AAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISW 316

Query: 182 NLVLRGFVE--CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS--------ARI 231
             ++ G V+  C +M  A  VF  M +   +  +  I        ++ S          I
Sbjct: 317 TAMISGLVQNDCADM--AVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYI 374

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           L + + + D+ S NS++  YAK G L  +  +F+ M  R++ SW+ ++ G+AQ+G+  +A
Sbjct: 375 LRQRIKL-DIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKA 433

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           L LF EM     RPD I+V+  + ACA +GAL  GKWIH F+ +S +   +++ TAL+DM
Sbjct: 434 LLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDM 493

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y KCG L  A++ F  M +++++S++ +IAG G +G GE AL+ ++     GI  + +I+
Sbjct: 494 YSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIY 553

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           L +L ACSH+GL  +G   F SM +  GIEP+LEH +C+VDLLSRAG +E+A +  + M 
Sbjct: 554 LSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMF 613

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
            KP++ + G LL ACR   NV L ++V   +V LK  + G YV L++ YA    W+    
Sbjct: 614 PKPSMDVLGILLDACRTTGNVELGDIVAREIVILKPANAGNYVQLAHSYASMKRWDGVGE 673

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           +   M+   +KK  G S IE+ G I  F +      Q EE+ LV++
Sbjct: 674 VWTQMKSLHLKKLPGWSFIELHGTITTFFTDHSSHPQFEEIMLVLK 719



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 118/436 (27%), Positives = 224/436 (51%), Gaps = 20/436 (4%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A ++F+ +   N     TMI  YT++     A S Y  M+R+G+       P  +   G+
Sbjct: 102 ARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGI------QPSSVTMLGL 155

Query: 125 LMGLVEGTE---IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           L G++E      +H  V++ GF  DV + N ++ +Y KCG +  A+++FE  + +D++SW
Sbjct: 156 LSGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISW 215

Query: 182 NLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKK----GDISSARILF 233
           N ++ G+ + G + +  ++   M     + D  ++  ++     +     G +    IL 
Sbjct: 216 NSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILR 275

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
             +     I   S+I  Y K G++ +A ++F  M  ++V SW+ MI G  Q+     A+ 
Sbjct: 276 AGLEQDSHIE-TSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVT 334

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           +FR ML   V P   ++   ++ACA++G+  LG  +H ++ R RI +D+  Q +L+ MY 
Sbjct: 335 VFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYA 394

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCG L+++  +F  M++++++S+N +++G   NG   +AL  F +M       D +  + 
Sbjct: 395 KCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVS 454

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           +L AC+  G   +G  I   + + C + P +   + LVD+ S+ G+L  A    + MP +
Sbjct: 455 LLQACASIGALHQGKWIHNFVTKSC-LGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQ 513

Query: 474 PNLALWGTLLLACRNH 489
            +L  W +++    +H
Sbjct: 514 -DLVSWSSIIAGYGSH 528



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/414 (28%), Positives = 200/414 (48%), Gaps = 6/414 (1%)

Query: 74  QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
            P T  +N +I   + +      L  Y +M       D +T+P ++KAC  L     G  
Sbjct: 10  NPATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLS 69

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
            H  V+  G+  D ++   LI  YSK GH   AR VF+  + +++V W  ++  +   GE
Sbjct: 70  FHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGE 129

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARIL----FEHMPIKDLISWNSMID 249
              A  +++ M ++     S+ + G      ++   + L     ++    D+   NSM++
Sbjct: 130 HDVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLN 189

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
            Y K G +  AQ LF  M  R+V SW+ ++ GYAQ GN +E L L   M   G+ PD  +
Sbjct: 190 VYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQT 249

Query: 310 VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369
               +SA A    L +GK +H  + R+ +  D  ++T+LI MY+KCG+++ A RIF  M 
Sbjct: 250 FGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMM 309

Query: 370 KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR 429
            K+VIS+  MI+GL  N   + A+  F +M    +         VL AC+  G    G  
Sbjct: 310 HKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTS 369

Query: 430 IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
           +   + R   I+  +   + LV + ++ G LEQ+ ++ + M  + ++  W  ++
Sbjct: 370 VHGYILRQ-RIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRR-DIVSWNAIV 421



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 152/351 (43%), Gaps = 72/351 (20%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N++ A R+F  +   +      MI G  Q+     A++ +  M +  ++    T   VL 
Sbjct: 297 NVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLA 356

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L     GT +HG +++     D+   N L+ MY+KCGH+  + SVF+    +D+VS
Sbjct: 357 ACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVS 416

Query: 181 WNLVLRGFVECGEMGKAREVFDEM----PQKDAIS------------------W------ 212
           WN ++ G  + G + KA  +F+EM     + D+I+                  W      
Sbjct: 417 WNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVT 476

Query: 213 -----------SIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQ 261
                      + ++D Y  K GD+ SA+  F+ MP +DL+SW+S+I GY          
Sbjct: 477 KSCLGPCILIDTALVDMY-SKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGS-------- 527

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
                                  HG  + AL ++ + L  G++P+ +  +  +SAC+  G
Sbjct: 528 -----------------------HGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNG 564

Query: 322 ALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
            +D G  + H   K   I   +  +  ++D+  + G ++EA   +  M  K
Sbjct: 565 LVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPK 615


>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 670

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 178/501 (35%), Positives = 285/501 (56%), Gaps = 11/501 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A ++F ++++ +      MI  + Q       L     M+ +G   +  T   +L 
Sbjct: 172 SVEDARKVFEEMHERDVVSWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLS 231

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           ACG +  + +G  ++  V + G   DV + N LIGMY KCG M  A   F+G  I++  S
Sbjct: 232 ACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKS 291

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILF--- 233
           WN ++ GFV+ G+  +A  +F+EM       D I+   ++  Y  + GD+   R L    
Sbjct: 292 WNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTY-AQLGDLQQGRYLHNYI 350

Query: 234 -EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
            +H    D+I  NS+I+ YAK GD+ AA+ +F  M  R++ SW+ M+ GY +    + A 
Sbjct: 351 KDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAF 410

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            LF +M  + V    ++++  +SAC+Q+GALD G+ IH ++K   +  DM +++AL+DMY
Sbjct: 411 NLFDDMKVRDVMASEMALVSLLSACSQLGALDKGREIHSYIKEKSVRTDMWLESALVDMY 470

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCG +D A  IF  M  K  +++N MI GL   G G+EA+  F Q+     PK D I L
Sbjct: 471 AKCGCIDAAAEIFSRMRHKQTLAWNAMIGGLASQGQGKEAVALFEQLLKLRDPKPDAITL 530

Query: 413 G-VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
             VL AC+H G+  EG   F  M    GI P  EHY C+VDLL RAG L++A N ++ MP
Sbjct: 531 KVVLCACTHVGMVDEGLHYFNLMLT-LGIVPDNEHYGCIVDLLGRAGLLDEAYNFIQKMP 589

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           ++PN  +WG+LL ACR H  + L +++ + +++L  +D G +VL+SN++A+ G W+   +
Sbjct: 590 IQPNPVIWGSLLAACRVHHRMELGKIIGQHIIDLAPNDVGAHVLISNLHAEEGQWDDVEQ 649

Query: 532 IRKMMRKRKIKKETGRSVIEI 552
           +R MM  R+++K  G S I++
Sbjct: 650 VRGMMGSRRVEKSPGHSSIQV 670



 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 152/509 (29%), Positives = 253/509 (49%), Gaps = 15/509 (2%)

Query: 10  SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSP-NTLNMDQAERL 68
           + ++ L++ L    +  ++ ++  +L    L ++P    +L+  L SP +  +M  A ++
Sbjct: 16  ACRDSLLAHLDACASRANLAELHGRLVRAHLGSDPCVAGRLVTLLASPVSRHDMPYARKV 75

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM-- 126
           F+++ QP   + N MIRGY     P  AL  +  M+R G+  DNYT   V ++       
Sbjct: 76  FDRMAQPTAIVWNCMIRGYNSCHAPMDALELFRAMRRSGVSPDNYTMAAVAQSSAAFASW 135

Query: 127 -GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL 185
            G   G  +H  V ++GF  D+FV++GLI  Y     +  AR VFE    +D+VSW L++
Sbjct: 136 KGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWTLMI 195

Query: 186 RGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS--------ARILFEHMP 237
             F +CG+        DEM  +      I I       G + +        AR+  E+  
Sbjct: 196 SAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARV-DEYGI 254

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
             D+   N++I  Y K G +  A + F  MP RN  SW+ +IDG+ Q+G  KEAL +F E
Sbjct: 255 EADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEE 314

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
           ML  GV PDVI+++  +S  AQ+G L  G+++H ++K   I  D+I+Q +LI+MY KCG 
Sbjct: 315 MLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGD 374

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
           +  A  IF +M +++++S+  M+ G         A   F  M+   +   ++  + +L A
Sbjct: 375 MAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSA 434

Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
           CS  G   +G  I   +K    +   +   S LVD+ ++ G ++ A  I   M  K  LA
Sbjct: 435 CSQLGALDKGREIHSYIKEK-SVRTDMWLESALVDMYAKCGCIDAAAEIFSRMRHKQTLA 493

Query: 478 LWGTLLLACRNHQNVTLAEVVVEGLVELK 506
            W  ++    +      A  + E L++L+
Sbjct: 494 -WNAMIGGLASQGQGKEAVALFEQLLKLR 521


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 190/514 (36%), Positives = 290/514 (56%), Gaps = 23/514 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           NM  A R+FN+    ++   N+++ GY +  N ++A   Y  M  + ++  N        
Sbjct: 128 NMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASN-------- 179

Query: 121 ACGVLMGL----VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG-SEI 175
           +  VL G+    VE  ++  E+++     D+   + LI  + +      A   F G  +I
Sbjct: 180 SMIVLFGMRGLVVEACKLFDEMLEK----DMVTWSALIACFQQNEMYEEAIRTFVGMHKI 235

Query: 176 KDLVSWNLVLRGFVECGE-----MGKAREVFD-EMPQKDAISWSIMIDGYRKKKGDISSA 229
             +V   + +     C       MGK       ++  +  I+    +     K GDI  A
Sbjct: 236 GVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVA 295

Query: 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
           R LF+   + DLISWNSMI GY K   +  A+ +F+ MPE++V SWS MI GYAQ+    
Sbjct: 296 RKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFD 355

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           E L LF+EM   G +PD  +++  ISACA++ AL+ GKW+H ++KR+ +T+++I+ T LI
Sbjct: 356 ETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLI 415

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           DMYMKCG ++ A  +FY M +K + ++N +I GL MNG  E +L  F+ M+   +  +++
Sbjct: 416 DMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEI 475

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            F+GVL AC H GL  EG   F SM     I+P ++HY C+VDLL RAG+L++A  ++  
Sbjct: 476 TFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNR 535

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           MPM P++A WG LL AC+ H +  +   V   L+EL+ D  G +VLLSNIYA  G W+  
Sbjct: 536 MPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDV 595

Query: 530 LRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           L IR MM K ++ K  G S+IE +G I EF++G+
Sbjct: 596 LEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGD 629



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 138/477 (28%), Positives = 236/477 (49%), Gaps = 65/477 (13%)

Query: 40  LITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSF 99
            I E +  S+L+   T    +++D   R+FN I   N +M N MIR Y Q+++P  A + 
Sbjct: 6   FIRETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTL 65

Query: 100 YVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSK 159
           Y +M    L  DNYTYP +++AC +     E  ++H  V+K+GF  DV+V N LI  +S 
Sbjct: 66  YKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSV 125

Query: 160 CGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY 219
           C +M  A  VF  S + D VSWN +L G++E G + +A+ ++ +MP++  I+ + MI  +
Sbjct: 126 CSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLF 185

Query: 220 RKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMI 279
              +G +  A  LF+ M  KD+++W+++I  + +           NEM E          
Sbjct: 186 -GMRGLVVEACKLFDEMLEKDMVTWSALIACFQQ-----------NEMYE---------- 223

Query: 280 DGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH--------- 330
                     EA+  F  M   GV  D +  + A+SACA +  +++GK IH         
Sbjct: 224 ----------EAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTE 273

Query: 331 --VFMKRSRITM--------------------DMIVQTALIDMYMKCGSLDEARRIFYSM 368
             + ++ + I M                    D+I   ++I  Y+KC  +D A+ IF SM
Sbjct: 274 SYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSM 333

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
            +K+V+S++ MI+G   N   +E L  F +M+  G   D+   + V+ AC+      +G 
Sbjct: 334 PEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGK 393

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
            +   +KR+ G+   +   + L+D+  + G +E AL +   M ++  ++ W  L+L 
Sbjct: 394 WVHAYIKRN-GLTINVILGTTLIDMYMKCGCVETALEVFYGM-IEKGISTWNALILG 448



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 144/329 (43%), Gaps = 39/329 (11%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A+ +F+ + + +    ++MI GY Q+    + L+ +  M+  G   D  T   V+ A
Sbjct: 323 VDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISA 382

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L +G  +H  + + G   +V +   LI MY KCG +  A  VF G   K + +W
Sbjct: 383 CARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTW 442

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQ----KDAISWSIMIDGYRK----KKGDISSARILF 233
           N ++ G    G +  + ++F  M +     + I++  ++   R      +G      ++ 
Sbjct: 443 NALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIH 502

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEAL 292
           +H    ++  +  M+D   + G L  A++L N MP   +V +W  ++    +HG+ +   
Sbjct: 503 DHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGR 562

Query: 293 YLFREML------------------CQGVRPDVISVMG--------AISACAQVGALDLG 326
            + R+++                   +G   DV+ + G         I  C+ + A  + 
Sbjct: 563 RVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGV- 621

Query: 327 KWIHVFMKRSRITMDM-IVQTALIDMYMK 354
             IH F+   +   DM  ++  L++M MK
Sbjct: 622 --IHEFLAGDKTHPDMDAIEDMLVEMAMK 648


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 196/581 (33%), Positives = 323/581 (55%), Gaps = 15/581 (2%)

Query: 10  SLKNP---LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAE 66
           S +NP   L+SL + +KT     Q+ AQ+  N L         +  +     +L++  A 
Sbjct: 10  SSRNPTKTLLSLFRFTKTLASNHQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHV--AS 67

Query: 67  RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
           + FN I   N +  NT++  ++++      L  +  M ++G LVD++   F +KAC  L 
Sbjct: 68  KAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGL- 126

Query: 127 GLVEGTEI-HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL 185
            L +G ++ H   +K+    D +V   L+ +Y++ G +  A  VFE   +K+ V W +++
Sbjct: 127 SLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMI 186

Query: 186 RGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR--ILFEHMPIK-DLI 242
           +G +   E     E+F  M +        +++G  +  G++ + +    F  + IK + I
Sbjct: 187 KGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFI 246

Query: 243 SWN-----SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
             N     S++D Y K G L  A +LF E+  R+V  WS +I G+A++G   E++ +FR+
Sbjct: 247 DSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQ 306

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
           ML   V P+ ++    + AC+ +G+L  G+ +H +M R+ + +D+   T+ IDMY KCG 
Sbjct: 307 MLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGC 366

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
           +  A R+F  + +KNV S++ MI G GM+G   EAL  F +M +     + + F+ VL A
Sbjct: 367 IVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSA 426

Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
           CSHSG   EG+  F+SM R  GI P  EHY+C+VDLL RAG++++AL+ + +MP +P  +
Sbjct: 427 CSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGAS 486

Query: 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537
            WG LL ACR H+   LAE V + L+ L++D  G+YV+LSNIYAD GMWE   + R  M 
Sbjct: 487 AWGALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMC 546

Query: 538 KRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQS 578
           ++ I K  G + IEI+  +  F S + F  ++ ++E +  S
Sbjct: 547 EKGIHKIVGFTSIEIEEKLYLFSSEDRFAYKNTQIESLWNS 587


>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04750, mitochondrial; Flags: Precursor
 gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 661

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 196/595 (32%), Positives = 337/595 (56%), Gaps = 58/595 (9%)

Query: 18  LLQISKTTTHILQILAQLTTNDLITEPFTLSQLLM--SLTSPNTLNMDQAERLF-NQIYQ 74
           LL+   +     Q+LAQ+   +LI + F +S+L+   ++T P   N+D A+ LF N    
Sbjct: 40  LLENCNSRNQFKQVLAQIMRFNLICDTFPMSRLIFFSAITYPE--NLDLAKLLFLNFTPN 97

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           PN +++NTMI   + S N  +    Y +M R  +  D  T+ +++KA   L    E  +I
Sbjct: 98  PNVFVYNTMISAVSSSKN--ECFGLYSSMIRHRVSPDRQTFLYLMKASSFL---SEVKQI 152

Query: 135 HGEVVKMGFLC-DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           H  ++  G L    ++ N L+  Y + G+ G A  VF      D+ S+N+++ G+ + G 
Sbjct: 153 HCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGF 212

Query: 194 MGKAREVFDEMPQKDAIS---WSIM-----------------IDGYRKKKGDISSARIL- 232
             +A +++ +M   D I    ++++                 + G+ +++G + S+ ++ 
Sbjct: 213 SLEALKLYFKMVS-DGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLIL 271

Query: 233 --------------------FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
                               F+ M  KD+ SWN+M+ G+ ++GD+ AAQ +F++MP+R++
Sbjct: 272 SNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDL 331

Query: 273 FSWSIMIDGYAQHG-NPKEALYLFREM-LCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
            SW+ ++ GY++ G + +    LF EM + + V+PD ++++  IS  A  G L  G+W+H
Sbjct: 332 VSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVH 391

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
             + R ++  D  + +ALIDMY KCG ++ A  +F + T+K+V  +  MI GL  +G G+
Sbjct: 392 GLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQ 451

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
           +AL+ F +M+ EG+  +++  L VL ACSHSGL  EG  +F  MK   G +P+ EHY  L
Sbjct: 452 QALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSL 511

Query: 451 VDLLSRAGELEQALNIVE-SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509
           VDLL RAG +E+A +IV+  MPM+P+ ++WG++L ACR  +++  AE+ +  L++L+ + 
Sbjct: 512 VDLLCRAGRVEEAKDIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKLEPEK 571

Query: 510 CGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG-RSVIEIDGNIKEFVSGE 563
            G YVLLSNIYA  G W ++ + R+ M  R +KK  G  SV+ ++G +  FV+ E
Sbjct: 572 EGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSVVGVEG-LHRFVAAE 625


>gi|8671867|gb|AAF78430.1|AC018748_9 Contains similarity to glycerine-rich protein from Nicotiana glauca
           gb|AF151215 and contains multiple PPR PF|01535 repeats
           [Arabidopsis thaliana]
          Length = 816

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 178/511 (34%), Positives = 288/511 (56%), Gaps = 33/511 (6%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKG-LLVDNYTYPFVLKACG 123
           A  LF+++ + N      MI GY ++   +     ++ M+++G + V++ T   + KAC 
Sbjct: 227 ARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACR 286

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
             +   EG++IHG V +M    D+F+ N L+ MYSK G+M                    
Sbjct: 287 DFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYM-------------------- 326

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243
                      G+A+ VF  M  KD++SW+ +I G  ++K  IS A  LFE MP KD++S
Sbjct: 327 -----------GEAKAVFGVMKNKDSVSWNSLITGLVQRK-QISEAYELFEKMPGKDMVS 374

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
           W  MI G++  G++    +LF  MPE++  +W+ MI  +  +G  +EAL  F +ML + V
Sbjct: 375 WTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEV 434

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
            P+  +    +SA A +  L  G  IH  + +  I  D+ VQ +L+ MY KCG+ ++A +
Sbjct: 435 CPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYK 494

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           IF  +++ N++SYN MI+G   NGFG++ALK F+ +E+ G   + + FL +L AC H G 
Sbjct: 495 IFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGY 554

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
              G++ F+SMK    IEP  +HY+C+VDLL R+G L+ A N++ +MP KP+  +WG+LL
Sbjct: 555 VDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLL 614

Query: 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
            A + H  V LAE+  + L+EL+ D    YV+LS +Y+  G      RI  + + ++IKK
Sbjct: 615 SASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKK 674

Query: 544 ETGRSVIEIDGNIKEFVSGEIFDVQSEELEL 574
           + G S I + G +  F++G+   +  EE+ +
Sbjct: 675 DPGSSWIILKGEVHNFLAGDESQLNLEEIAI 705



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 168/359 (46%), Gaps = 44/359 (12%)

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
           +F  N  I  +++ G++  A ++F     + +VSW  ++  + E G+M KA +VFDEMP 
Sbjct: 50  IFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPV 109

Query: 207 KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNE 266
           +   S++ MI    K K D+  A  LF  +P K+ +S+ +MI G+ + G    A+ L+ E
Sbjct: 110 RVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAE 169

Query: 267 MPE--RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
            P   R+  + ++++ GY + G   EA+ +F+ M  +    +V+S               
Sbjct: 170 TPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVK----EVVSC-------------- 211

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
                                ++++  Y K G + +AR +F  MT++NVI++  MI G  
Sbjct: 212 ---------------------SSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYF 250

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLI-ACSHSGLATEGYRIFQSMKRHCGIEPK 443
             GF E+    F +M  EG  K +   L V+  AC       EG +I   + R   +E  
Sbjct: 251 KAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRM-PLEFD 309

Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
           L   + L+ + S+ G + +A  +   M  K +++ W +L+      + ++ A  + E +
Sbjct: 310 LFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVS-WNSLITGLVQRKQISEAYELFEKM 367



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N + A ++F+ I +PN   +NTMI GY+ +   +KAL  +  ++  G   +  T+  +L 
Sbjct: 488 NTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLS 547

Query: 121 ACGVLMGLVE 130
           AC V +G V+
Sbjct: 548 AC-VHVGYVD 556


>gi|116309337|emb|CAH66421.1| H0622F05.4 [Oryza sativa Indica Group]
 gi|116309402|emb|CAH66479.1| OSIGBa0137L20.8 [Oryza sativa Indica Group]
          Length = 545

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 181/548 (33%), Positives = 301/548 (54%), Gaps = 6/548 (1%)

Query: 4   LAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMD 63
           +  A      P+ +LL   +T   + Q+ A++    L      L++   +    +TL+  
Sbjct: 1   MTTAALRPSPPVATLLGRCRTARCLAQLHARIVRLGLHNHHALLARFAAAC---DTLSCP 57

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
                   +  P   + N ++    + +  + AL+ +  ++      D +++P +L AC 
Sbjct: 58  SVVASLLSVAVP-VRLRNAVLASLARHAPLRDALAQFNLLRGGASRPDAFSFPPLLCACA 116

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
               L  G  +H   +++G   D+FV   LI  Y +CG    AR++F+       VSW  
Sbjct: 117 RASSLPTGASLHAAAIRLGVDADLFVRTALIQFYGRCGAAAAARALFDSLTNPSEVSWTA 176

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243
           ++  +V  G++  ARE+FD++P ++ + W+ M+DGY  K GD+  AR LF+ MP +   +
Sbjct: 177 IVTAYVNSGDILTARELFDQIPHRNVVHWNAMVDGY-VKCGDLEGARKLFDEMPERTPAA 235

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
           + S+I GY   G++ AA+ LF+++ +R++F+WS MI G AQ+G P EAL +F E   Q +
Sbjct: 236 YTSLIGGYLNAGNMGAARTLFDKLEDRDLFAWSTMISGCAQNGYPGEALRIFNEFQKQEI 295

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI-VQTALIDMYMKCGSLDEAR 362
            PD + ++G +SAC+Q+G + L +WI  ++    I M+ + V   LI+M  KCG+++ A 
Sbjct: 296 CPDELVIVGLMSACSQLGNITLARWIEGYIMIYPIDMNNVHVMAGLINMNAKCGNMERAT 355

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
            +F SM+ ++V SY  M+ G  ++G   +A++ F+QM  EGI  D+  F  VL ACSH+G
Sbjct: 356 LLFESMSVRDVFSYCSMMQGHCLHGSASKAVELFSQMLLEGITPDNAAFTVVLTACSHAG 415

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
           L  EG R F  MK    I P  +HY+CLV LL R G L  A  +++SMP +P+   WG L
Sbjct: 416 LVEEGKRYFDMMKNEYMIVPSGDHYACLVSLLGRFGMLRDAYELIKSMPGEPHPGAWGAL 475

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
           L  C+ H ++ L ++  + L E++ ++ G YV LSNIYA+   W +    R  M  R I 
Sbjct: 476 LGGCKFHCDIELGKIAAKKLFEIEPENAGNYVSLSNIYANIDRWGNVSETRAEMTGRGIT 535

Query: 543 KETGRSVI 550
           K  G +++
Sbjct: 536 KIAGCTLV 543


>gi|357473845|ref|XP_003607207.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508262|gb|AES89404.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 542

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 207/565 (36%), Positives = 294/565 (52%), Gaps = 59/565 (10%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITE-PFTLSQLLMSLTSPNTLNMDQAERLFNQ--I 72
            SLL    + + + Q+ A +T + L +  P T   +  S  SP   N+  A  LF    I
Sbjct: 10  TSLLNKLSSISELKQLQAIITKSGLHSHIPLTTKLIFFSALSPFG-NLSHAYSLFQHSSI 68

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE-- 130
              N ++ NTMIR ++ S  P +AL  Y  M    ++ D+YT  FVLKAC     L++  
Sbjct: 69  LIHNPFISNTMIRAFSHSCFPLQALLIYNQMLINNVVSDSYTCNFVLKACSRAYKLIQES 128

Query: 131 --------------GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK 176
                         GTEIH  V+K+GF  D  V N L+  YS+CG               
Sbjct: 129 GSCDDDNLVVVYNKGTEIHCRVIKIGFQNDPSVQNSLLYFYSQCG--------------- 173

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
            LVS                AR +FD++     +SW+IMI  Y     D  SA  L E M
Sbjct: 174 -LVS---------------VARHLFDQIKDTSLVSWNIMISAY-DLVNDYESADYLLELM 216

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
           P K ++SWN++I  Y ++GD+ AA+++F  MPERN  SW+ MI G     +   AL LF 
Sbjct: 217 PCKTVVSWNTLIARYIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELFS 276

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
           EM   GV+P  ++++  + ACA+ GAL++G  I+  +K     ++  +  AL++MY KCG
Sbjct: 277 EMQNAGVKPTEVTLISILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKCG 336

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE---GIPKDDLIFLG 413
           +L  A  IF  M  K V  +N M+ GL ++G+ EE  + F +ME      I  D + F+G
Sbjct: 337 NLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFIG 396

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           VL+ACSH GL  +    F  M +   I P  +HY C+VDLLSR G LE+A  I+ + P +
Sbjct: 397 VLVACSHKGLVDKARWYFDHMVKRYKIVPDSKHYGCMVDLLSRWGLLEEAYQIIMTAPFQ 456

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
            ++ LW TLL ACR   N  LAE+  + L +LK    G YVLLSNIYA+AG W+   R+R
Sbjct: 457 NSVVLWRTLLGACRTQSNTELAEISFKQLAKLKQLIDGDYVLLSNIYAEAGRWDEVERLR 516

Query: 534 KMMRKRKIKKETGRSVIEIDGNIKE 558
             M    + ++ G S I    N+KE
Sbjct: 517 SEMDYLHVPRQAGYSQI----NMKE 537


>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
 gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
 gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
 gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
          Length = 534

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 171/444 (38%), Positives = 272/444 (61%), Gaps = 10/444 (2%)

Query: 146 DVFVVNGLIGMYSK----CGHMGCARSVFEGS-EIKDLVSWNLVLRGFVECGEMGKAREV 200
           +VF+ N +I  Y+     C  +   + +   S E+ D  ++  + +     G     ++V
Sbjct: 72  NVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQV 131

Query: 201 FDEM----PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGD 256
              +    P+   ++ + +ID Y K   D+  A  +F+ M  +D+ISWNS++ GYA++G 
Sbjct: 132 HGHLCKFGPRFHVVTENALIDMYMKFD-DLVDAHKVFDEMYERDVISWNSLLSGYARLGQ 190

Query: 257 LVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISA 316
           +  A+ LF+ M ++ + SW+ MI GY   G   EA+  FREM   G+ PD IS++  + +
Sbjct: 191 MKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPS 250

Query: 317 CAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISY 376
           CAQ+G+L+LGKWIH++ +R        V  ALI+MY KCG + +A ++F  M  K+VIS+
Sbjct: 251 CAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISW 310

Query: 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436
           + MI+G   +G    A++ F +M+   +  + + FLG+L ACSH G+  EG R F  M++
Sbjct: 311 STMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQ 370

Query: 437 HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAE 496
              IEPK+EHY CL+D+L+RAG+LE+A+ I ++MPMKP+  +WG+LL +CR   N+ +A 
Sbjct: 371 DYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVAL 430

Query: 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNI 556
           V ++ LVEL+ +D G YVLL+NIYAD G WE   R+RKM+R   +KK  G S+IE++  +
Sbjct: 431 VAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIV 490

Query: 557 KEFVSGEIFDVQSEELELVIQSFV 580
           +EFVSG+       E+ +V+Q F 
Sbjct: 491 QEFVSGDNSKPFWTEISIVLQLFT 514



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 122/402 (30%), Positives = 188/402 (46%), Gaps = 44/402 (10%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           ++N  +  LQ  K+     +I A +  + L    F +++  M        +MD A RLFN
Sbjct: 9   VENYFIPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTK--MVDFCDKIEDMDYATRLFN 66

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGL-LVDNYTYPFVLKACGVLMGLV 129
           Q+  PN +++N++IR YT +S     +  Y  + RK   L D +T+PF+ K+C  L    
Sbjct: 67  QVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCY 126

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
            G ++HG + K G    V   N LI MY K   +  A  VF+    +D++SWN +L G+ 
Sbjct: 127 LGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYA 186

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK---------- 239
             G+M KA+ +F  M  K  +SW+ MI GY    G    A   F  M +           
Sbjct: 187 RLGQMKKAKGLFHLMLDKTIVSWTAMISGY-TGIGCYVEAMDFFREMQLAGIEPDEISLI 245

Query: 240 ------------DLISW-----------------NSMIDGYAKIGDLVAAQQLFNEMPER 270
                       +L  W                 N++I+ Y+K G +  A QLF +M  +
Sbjct: 246 SVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGK 305

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWI 329
           +V SWS MI GYA HGN   A+  F EM    V+P+ I+ +G +SAC+ VG    G ++ 
Sbjct: 306 DVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYF 365

Query: 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
            +  +  +I   +     LID+  + G L+ A  I  +M  K
Sbjct: 366 DMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMK 407


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 203/560 (36%), Positives = 295/560 (52%), Gaps = 77/560 (13%)

Query: 11  LKNP--LVSLLQISKTTTHILQILAQLTTNDLITEP-FTLSQLLMSLTSPNTLNMDQAER 67
           L NP     LL      + + QI AQ+ T  L +    T S +   L + N  N   A  
Sbjct: 71  LPNPQTFSLLLNQRPKLSPLQQIHAQVVTQALSSNASLTASLIHCYLCAKNHPN---ARI 127

Query: 68  LFNQIYQPNTYMH--NTMIRGYTQSSNPQKALSFYVNM----KRKGLLVDNYTYPFVLKA 121
           LF+    P+  +   N MIR Y++  N Q+ +  ++ M        ++ D YT+ FV+ +
Sbjct: 128 LFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITS 187

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C   + L+ G  +HG VVK GF  +++V N +I M        C  SVF           
Sbjct: 188 CSHQISLIYGEIVHGMVVKSGFESNLYVGNSVINM--------C--SVF----------- 226

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
                       M  AR+VF++M ++                                D+
Sbjct: 227 ----------ARMEDARKVFNQMSER--------------------------------DV 244

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
            SW S++ GYAK G++  A +LFN MP RN  SW++MI G+   G   EAL  F  MLC 
Sbjct: 245 FSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCD 304

Query: 302 G-VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
             V P+   ++  +SACA +GALD G WIH+++ +  I     + TALIDMY KCG +D 
Sbjct: 305 DRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDC 364

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           A R+F  + K++V+S+  MI+GL  +G G++AL+ F QM  E +  +++  LGVL  CSH
Sbjct: 365 ASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSH 424

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
           SGL  EG  I  +M+   GI PK+EHY C +DLL RAG LE+AL +V++MPM+P++ +W 
Sbjct: 425 SGLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWR 484

Query: 481 TLLLACRNHQNVTLAEVVVEGLVELKADD-CGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
            LL A R H NV L E ++  + +LK+ D  G  VLLSN+YA  G WE    +RK+M  R
Sbjct: 485 ALLSASRIHHNVNLGEQIISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDR 544

Query: 540 KIKKETGRSVIEIDGNIKEF 559
           + +   G S IE++G + EF
Sbjct: 545 RSESSPGCSWIEVNGLVHEF 564


>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 618

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 160/463 (34%), Positives = 268/463 (57%), Gaps = 32/463 (6%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           +V   N ++  Y+  G +G A ++F G  ++D  SWN++L   V  G + KAR++FD MP
Sbjct: 128 NVVSWNTMLEAYTSSGRVGDACTLFNGMPVRDAGSWNILLAALVRSGNIDKARKLFDRMP 187

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKI----------- 254
           +++ ++W+ M+ G   + G ++ AR LF+ MP ++++SWN+MI GYA+            
Sbjct: 188 ERNVMAWTTMVAGI-ARSGSVNEARALFDGMPERNVVSWNAMISGYARNHMIDEAHDLFM 246

Query: 255 --------------------GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
                                +L  AQ+LF++MP RNV +W+ M++GY Q    + AL L
Sbjct: 247 KMPTRDIASWNIMITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNGYLQSIQSETALQL 306

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           F  ML  G+RP+ ++ +GA+ AC+ +  L  G+ +H  + ++    D  +++ L+++Y K
Sbjct: 307 FNGMLIDGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAK 366

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG +  AR++F    +K+VIS+N MIA    +G G EA+  + +M+  G   +D+ ++G+
Sbjct: 367 CGEIILARKVFNLSKEKDVISWNGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGL 426

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L ACSHSGL  EG RIF+ M +   I  + EHY+CL+DL SRAG L  A  ++  + ++P
Sbjct: 427 LSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEP 486

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           +  +W  LL  C +H N ++ ++    L+E + ++ G Y LL NIYA AG W+ A +IR 
Sbjct: 487 SSTVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRS 546

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
            M  R +KK+ G S IE+   +  FVS +    +S+ +  ++Q
Sbjct: 547 EMNDRGLKKQPGCSWIEVANKVHVFVSRDKSHSESDLINSLLQ 589



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 208/400 (52%), Gaps = 19/400 (4%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIK-DLVSWNLVLRGFVECGEMGKAREVFDEM 204
           DV     L+  Y+  G +  AR++F+  + + ++V+W  +L G+   G + +A  +F  M
Sbjct: 65  DVVSWTALVAAYACQGMLHDARALFDRPDARRNVVTWTALLSGYARAGRVDEAEALFGRM 124

Query: 205 PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
           P+++ +SW+ M++ Y    G +  A  LF  MP++D  SWN ++    + G++  A++LF
Sbjct: 125 PERNVVSWNTMLEAY-TSSGRVGDACTLFNGMPVRDAGSWNILLAALVRSGNIDKARKLF 183

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
           + MPERNV +W+ M+ G A+ G+  EA  LF  M       +V+S    IS  A+   +D
Sbjct: 184 DRMPERNVMAWTTMVAGIARSGSVNEARALFDGM----PERNVVSWNAMISGYARNHMID 239

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
                 +FMK    T D+     +I  +++  +L+ A+ +F  M ++NV+++  M+ G  
Sbjct: 240 EAH--DLFMKMP--TRDIASWNIMITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNGYL 295

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444
            +   E AL+ F  M  +GI  + + FLG + ACS+    +EG ++ Q +   C    + 
Sbjct: 296 QSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMI---CKTPFQF 352

Query: 445 EHY--SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
           + +  S L++L ++ GE+  A  +  ++  + ++  W  ++ A  +H     A  + E +
Sbjct: 353 DTFIESTLMNLYAKCGEIILARKVF-NLSKEKDVISWNGMIAAYAHHGVGLEAIHLYEKM 411

Query: 503 VE--LKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540
            E   K +D   YV L +  + +G+ +  LRI + M K +
Sbjct: 412 QENGYKPNDV-TYVGLLSACSHSGLVDEGLRIFEYMVKDR 450



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 173/378 (45%), Gaps = 83/378 (21%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N+D+A +LF+++ + N     TM+ G  +S +  +A + +  M  +              
Sbjct: 175 NIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNEARALFDGMPER-------------- 220

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
                                    +V   N +I  Y++   +  A  +F     +D+ S
Sbjct: 221 -------------------------NVVSWNAMISGYARNHMIDEAHDLFMKMPTRDIAS 255

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK- 239
           WN+++ GF++   + +A+E+FD+MP+++ ++W+ M++GY +      +A  LF  M I  
Sbjct: 256 WNIMITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNGYLQSIQS-ETALQLFNGMLIDG 314

Query: 240 --------------------------------------DLISWNSMIDGYAKIGDLVAAQ 261
                                                 D    +++++ YAK G+++ A+
Sbjct: 315 IRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILAR 374

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
           ++FN   E++V SW+ MI  YA HG   EA++L+ +M   G +P+ ++ +G +SAC+  G
Sbjct: 375 KVFNLSKEKDVISWNGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSG 434

Query: 322 ALDLGKWIHVFMKRSR-ITMDMIVQTALIDMYMKCGSLDEARRIFYSM-TKKNVISYNVM 379
            +D G  I  +M + R I +     T LID+  + G L +A+R+ + +  + +   +N +
Sbjct: 435 LVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNAL 494

Query: 380 IAGLGMNGFGEEALKCFA 397
           + G   N  G E++   A
Sbjct: 495 LGGC--NSHGNESIGDLA 510



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 118/226 (52%), Gaps = 10/226 (4%)

Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI-KDLISWNSMID 249
            G +  AR +FD  P +D +SW+ ++  Y   +G +  AR LF+     +++++W +++ 
Sbjct: 48  AGRVSDARRLFDRTPDRDVVSWTALVAAY-ACQGMLHDARALFDRPDARRNVVTWTALLS 106

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
           GYA+ G +  A+ LF  MPERNV SW+ M++ Y   G   +A  LF  M  +    D  S
Sbjct: 107 GYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMPVR----DAGS 162

Query: 310 VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369
               ++A  + G +D  + +   M    +    +  T ++    + GS++EAR +F  M 
Sbjct: 163 WNILLAALVRSGNIDKARKLFDRMPERNV----MAWTTMVAGIARSGSVNEARALFDGMP 218

Query: 370 KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
           ++NV+S+N MI+G   N   +EA   F +M T  I   +++  G +
Sbjct: 219 ERNVVSWNAMISGYARNHMIDEAHDLFMKMPTRDIASWNIMITGFI 264



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 107/247 (43%), Gaps = 51/247 (20%)

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           N  +   A  G +  A++LF+  P+R+V SW+ ++  YA  G   +A  LF        R
Sbjct: 39  NRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFD-------R 91

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           PD                           +R+ +T      TAL+  Y + G +DEA  +
Sbjct: 92  PDA--------------------------RRNVVTW-----TALLSGYARAGRVDEAEAL 120

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC-SHSGL 423
           F  M ++NV+S+N M+     +G   +A   F      G+P  D     +L+A    SG 
Sbjct: 121 FGRMPERNVVSWNTMLEAYTSSGRVGDACTLF-----NGMPVRDAGSWNILLAALVRSGN 175

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             +  ++F  M      E  +  ++ +V  ++R+G + +A  + + MP + N+  W  ++
Sbjct: 176 IDKARKLFDRMP-----ERNVMAWTTMVAGIARSGSVNEARALFDGMPER-NVVSWNAMI 229

Query: 484 LA-CRNH 489
               RNH
Sbjct: 230 SGYARNH 236


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 180/529 (34%), Positives = 295/529 (55%), Gaps = 10/529 (1%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMK-RKGLLVDNYTYPFVLK 120
           + +A+ LF++  + N    NTMI G        +A + +  M+ ++ + V+  T   +L 
Sbjct: 185 LTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILP 244

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  +  L    E+HG  ++ GF  D  V NG +  Y+KCG + CA  VF   E K + S
Sbjct: 245 ACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNS 304

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR--------IL 232
           WN ++ G  + G+  KA  ++ +M     +     I         + S R        +L
Sbjct: 305 WNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVL 364

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
              + I   I   S++  Y   G+  +A+ LF+ M E++  SW+ MI GY+Q+G P++AL
Sbjct: 365 RHGLEIDSFIGI-SLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDAL 423

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            LFR+++  G +P  I+V+  + AC+Q  AL LGK  H +  ++ +  D+ V  + IDMY
Sbjct: 424 ILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMY 483

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            K G + E+R +F  +  K++ S+N +IA  G++G GEE+++ F +M   G   D   F+
Sbjct: 484 AKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFI 543

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
           G+L  CSH+GL  EG + F  M+   GIEPKLEHY+C++D+L RAG L+ AL +V  MP 
Sbjct: 544 GILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPE 603

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           +P+  +W +LL  CRN   + + ++V E L+EL+  +   YV LSN+YA +G W+   R+
Sbjct: 604 QPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRV 663

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
           R+M++   ++K+ G S IE+ G +  FV+G+    QS+E+ +  +   K
Sbjct: 664 RQMIKDIGLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEK 712



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 131/443 (29%), Positives = 223/443 (50%), Gaps = 22/443 (4%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM--KRKGLLVDNYTYPFVL 119
           +D A ++F+ +   N    N++I G++++   +      V M    +GLL D  T   VL
Sbjct: 82  VDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVL 141

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
             C   + +  G  IHG  VK+G   DV V N L+ MYSKCG++  A+ +F+ +  K+ V
Sbjct: 142 PVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAV 201

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMP-QKDAISWSIMIDGYRKKKGDISSARILFE---- 234
           SWN ++ G    G + +A  +F EM  Q+D     + +        +IS  R L E    
Sbjct: 202 SWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGY 261

Query: 235 ---HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
              H    D +  N  +  YAK G L+ A+++F  M  + V SW+ +I G AQ+G+P++A
Sbjct: 262 SIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKA 321

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           L L+ +M   G+ PD  ++   + A A + +L  GK +H F+ R  + +D  +  +L+ +
Sbjct: 322 LNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSL 381

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y+ CG    AR +F  M +K+ +S+N MI+G   NG  E+AL  F ++ ++G    D+  
Sbjct: 382 YIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAV 441

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV-----DLLSRAGELEQALNI 466
           + VL ACS       G       + HC     L      V     D+ +++G ++++ ++
Sbjct: 442 VSVLGACSQQSALRLG------KETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSV 495

Query: 467 VESMPMKPNLALWGTLLLACRNH 489
            + +  K +LA W  ++ A   H
Sbjct: 496 FDGLKNK-DLASWNAIIAAYGVH 517



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 127/394 (32%), Positives = 188/394 (47%), Gaps = 34/394 (8%)

Query: 111 DNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF 170
           DN+T+P V+KAC   +    G  IHG V+KMG L DVFV N LI MY K G +  A  VF
Sbjct: 30  DNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVF 89

Query: 171 EGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS-- 228
               +++LVSWN ++ GF    E G +++ FD + +        M+ G      DI++  
Sbjct: 90  HYMPVRNLVSWNSIISGF---SENGFSKDCFDMLVE--------MMAGEEGLLPDIATLV 138

Query: 229 ------ARILFEHMPIK------------DLISWNSMIDGYAKIGDLVAAQQLFNEMPER 270
                 AR +   M I+            D+   NS++D Y+K G L  AQ LF++   +
Sbjct: 139 TVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRK 198

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQ-GVRPDVISVMGAISACAQVGALDLGKWI 329
           N  SW+ MI G    G   EA  LFREM  Q  +  + ++V+  + AC ++  L   K +
Sbjct: 199 NAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKEL 258

Query: 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFG 389
           H +  R     D +V    +  Y KCG L  A R+FYSM  K V S+N +I G   NG  
Sbjct: 259 HGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDP 318

Query: 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449
            +AL  + QM   G+  D      +L+A +H      G  +   + RH G+E        
Sbjct: 319 RKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRH-GLEIDSFIGIS 377

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
           L+ L    GE   A  + + M  K +++ W  ++
Sbjct: 378 LLSLYIHCGESSSARLLFDGMEEKSSVS-WNAMI 410


>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
 gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
          Length = 767

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 177/499 (35%), Positives = 289/499 (57%), Gaps = 12/499 (2%)

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           P  + +N  IR +  SS P  +L  +++M R  +  D+YT PF+L A             
Sbjct: 116 PTAFSYNVAIR-FFASSRPHTSLRLFLHMLRSAIRPDSYTLPFLLLAAARYPAPSLARAA 174

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           H  + K+G       V+ LI MYS     G AR VF+G   +D+VSWN +++ +   G  
Sbjct: 175 HALLGKIGLNGHDHTVHSLITMYSYLDDPGAARKVFDGIPTRDVVSWNAMMKAYGRVGMN 234

Query: 195 GKAREVFDEMPQKDAISWSIMIDGYR----KKKGDISSARILFE-----HMPIKDLISWN 245
           G+   +F +M ++  ++ +++         + +GD+   R + E      M +  L+  +
Sbjct: 235 GEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVLGRWVEEWSWSARMEMDSLVG-S 293

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           +++  Y K G++  A+++F+ + ++++ +W+ MI GYAQ+G   EA+ LF  M   G+RP
Sbjct: 294 ALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRP 353

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D I++ G +SAC+ VGAL+LG  +  +  R  +  ++ V TAL+DMY KCG LD+A  +F
Sbjct: 354 DKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLDKAIEVF 413

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET-EGIPKDDLIFLGVLIACSHSGLA 424
             M  KNV S+N +I GL  NG G+EA++ F  M   EG+  DD+ F+GVL AC H+GL 
Sbjct: 414 RKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLV 473

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            +G R F S+     I PK+EHYSC+VDLL+R+G LE+A + +E +P K +  + G LL 
Sbjct: 474 KDGKRWFNSLTPEFQIIPKIEHYSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLA 533

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           ACR  +NV + E V+  +++L+  +   YV+ S IYA +   + + ++R +MR+R + K 
Sbjct: 534 ACRKCKNVEIGERVINRIIQLEPTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKT 593

Query: 545 TGRSVIEIDGNIKEFVSGE 563
            G S +E+ G + EF +G+
Sbjct: 594 PGCSWVEVSGKVLEFYAGD 612


>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g42920, chloroplastic; Flags: Precursor
 gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
 gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
 gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 191/541 (35%), Positives = 299/541 (55%), Gaps = 68/541 (12%)

Query: 24  TTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERLFNQIYQPNTYMHNT 82
           T   + QI A L    LI++  T S++L     SP+  +M+ A  +F +I   N ++ NT
Sbjct: 37  TMRELKQIHASLIKTGLISDTVTASRVLAFCCASPS--DMNYAYLVFTRINHKNPFVWNT 94

Query: 83  MIRGYTQSSNPQKALSFYVNM--KRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           +IRG+++SS P+ A+S +++M      +     TYP V KA G L    +G ++HG V+K
Sbjct: 95  IIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIK 154

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
            G   D F+                                N +L  +V CG        
Sbjct: 155 EGLEDDSFIR-------------------------------NTMLHMYVTCG-------- 175

Query: 201 FDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAA 260
                         +I+ +R           +F  M   D+++WNSMI G+AK G +  A
Sbjct: 176 -------------CLIEAWR-----------IFLGMIGFDVVAWNSMIMGFAKCGLIDQA 211

Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
           Q LF+EMP+RN  SW+ MI G+ ++G  K+AL +FREM  + V+PD  +++  ++ACA +
Sbjct: 212 QNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYL 271

Query: 321 GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMI 380
           GA + G+WIH ++ R+R  ++ IV TALIDMY KCG ++E   +F    KK +  +N MI
Sbjct: 272 GASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMI 331

Query: 381 AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGI 440
            GL  NGF E A+  F+++E  G+  D + F+GVL AC+HSG        F+ MK    I
Sbjct: 332 LGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMI 391

Query: 441 EPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVE 500
           EP ++HY+ +V++L  AG LE+A  ++++MP++ +  +W +LL ACR   NV +A+   +
Sbjct: 392 EPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAK 451

Query: 501 GLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
            L +L  D+   YVLLSN YA  G++E A+  R +M++R+++KE G S IE+D  + EF+
Sbjct: 452 CLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEFI 511

Query: 561 S 561
           S
Sbjct: 512 S 512


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 158/362 (43%), Positives = 239/362 (66%), Gaps = 2/362 (0%)

Query: 218 GYRKKKGDISSARILFEHM-PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
           G   + GD ++AR LF+ M P   ++S  +M+  YA +G L  A+ LF+ +P ++   W+
Sbjct: 429 GMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWN 488

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS 336
            MIDGY QHG P EAL LFR ML  GV PD ++V+  +SA AQ+G ++ GKW+H ++K S
Sbjct: 489 AMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNS 548

Query: 337 -RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
            R+ + + V TALIDMY KCGSL +A  +F+ +  K+++ +N MI G  M+G   +AL+ 
Sbjct: 549 RRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEM 608

Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           F Q   +G+   D+ F+G+L ACSHSG+  EG   FQSM+R  GI+PK+EHY C+VDLL 
Sbjct: 609 FVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLG 668

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515
           RAG +++A  +V+SM + P+  +W +LL ACR H+N++L + + + LV     + G+Y+L
Sbjct: 669 RAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLANSGMYIL 728

Query: 516 LSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELV 575
           LSNIYA  G W    R+R MM+   I+KE G S IEID  + EFV+G++   +++E+ ++
Sbjct: 729 LSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSHPRTDEIYVM 788

Query: 576 IQ 577
           + 
Sbjct: 789 LD 790



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 173/400 (43%), Gaps = 80/400 (20%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            +D +  L  +   P    + + I  ++   +   AL+   +M  +GLL   +T    L 
Sbjct: 338 RLDLSLALLRRTRDPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLP 397

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD--L 178
           AC    GL  G  +HG   K+    D +V   L+GMY++ G    AR++F+   + D  +
Sbjct: 398 AC---RGLSPGRALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFD-DMLPDPHV 453

Query: 179 VSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM-- 236
           VS   +L  + + G +  AR +FD +P KD + W+ MIDGY  + G  + A  LF  M  
Sbjct: 454 VSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGY-TQHGRPNEALRLFRRMLG 512

Query: 237 ----PIKDLI----------------SW------------------NSMIDGYAKIGDLV 258
               P +  +                 W                   ++ID Y K G L 
Sbjct: 513 SGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLG 572

Query: 259 AAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACA 318
            A  +F+ + ++++  W+ MI+GYA HG+ ++AL +F +   QG+ P  I+ +G ++AC+
Sbjct: 573 DAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACS 632

Query: 319 QVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNV 378
             G ++ G+     M+R                              Y +  K +  Y  
Sbjct: 633 HSGMVEEGREFFQSMERE-----------------------------YGIDPK-IEHYGC 662

Query: 379 MIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
           M+  LG  G  +EA   F  +++  I  D ++++ +L AC
Sbjct: 663 MVDLLGRAGLIKEA---FCLVQSMKITPDAVMWVSLLAAC 699



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 79/170 (46%), Gaps = 1/170 (0%)

Query: 33  AQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSN 92
           A+   +D++ +P  +S   M     +   +D A  LF+ +   +    N MI GYTQ   
Sbjct: 440 ARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGR 499

Query: 93  PQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFL-CDVFVVN 151
           P +AL  +  M   G+  D  T   VL A   L  +  G  +H  V     +   V V  
Sbjct: 500 PNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGT 559

Query: 152 GLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVF 201
            LI MY KCG +G A  VF G   KD+V WN ++ G+   G+  KA E+F
Sbjct: 560 ALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMF 609


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 180/525 (34%), Positives = 290/525 (55%), Gaps = 13/525 (2%)

Query: 47  LSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSF--YVNMK 104
           LS+LL   T+        A RL  QI  P+  + ++++  ++      + LSF  Y  M+
Sbjct: 39  LSRLLRRCTAATQFRY--ARRLLCQIQTPSIQLWDSLVGHFSGRVTLNRRLSFLSYRQMR 96

Query: 105 RKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG 164
           R G++   +T+P +LKA   L       + H  ++K GF  D+FV N LI  YS CG   
Sbjct: 97  RNGVVPSRHTFPPLLKAVFKLRD-ANPFQFHAHILKFGFDSDLFVRNSLISGYSNCGLFE 155

Query: 165 CARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK--- 221
               VF+G+E KD+VSW  ++ GFV      +A   F EM +    +  + +    K   
Sbjct: 156 FGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVSVLKATR 215

Query: 222 KKGDISSAR----ILFEHMPIK-DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
           K  D+   R       E   ++ D+   +S++D Y K G    AQ++F+EMP RNV +W+
Sbjct: 216 KAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWT 275

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS 336
            +I GY Q    ++ +++F EML   V P+  ++   +SACA VGAL  G+ +H ++ ++
Sbjct: 276 ALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKN 335

Query: 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF 396
            I ++  V T LID Y KCG L+EA  +F  + +KNV ++  MI G   +G+   A+  F
Sbjct: 336 SIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLF 395

Query: 397 AQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456
             M +  +  +++ F+ VL AC+H GL  EG R+F SMK    +EPK +HY+C+VDL  R
Sbjct: 396 HTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGR 455

Query: 457 AGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLL 516
            G LE+A  ++E MPM+P  A+WG L  +C  H++  L +     +++L+    G Y LL
Sbjct: 456 KGLLEEAKALIERMPMEPTNAVWGALFGSCLIHKDYELGKYAASRVIKLQPSHSGRYTLL 515

Query: 517 SNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
           +N+Y+++  W+   R+RK M+ +++ K  G S IE+ G + EF++
Sbjct: 516 ANLYSESQNWDDVARVRKQMKDQQVVKSPGCSWIEVKGKLHEFIA 560


>gi|356518597|ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g21470-like [Glycine max]
          Length = 535

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 182/486 (37%), Positives = 276/486 (56%), Gaps = 37/486 (7%)

Query: 84  IRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGF 143
           IR + Q  + + AL  Y   + +G+  D+   P + KAC  L  L     +H E +K G 
Sbjct: 19  IRNHIQQGSLRCALLAYKQTRHEGVY-DSSVAPLLFKACASLPFLHYVKALHAESIKAGS 77

Query: 144 LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDE 203
             DV +   L+  YSKCG +  AR++F+    +++V+WN ++ G++  G+   A  VF++
Sbjct: 78  ESDVIIGTALLTTYSKCGVVRDARNLFDTMPERNVVTWNAMISGYLRNGDTESAYLVFEK 137

Query: 204 MPQKDAISWSIMIDGYRKKKGDISSARILFEHMP--IKDLISWNSMIDGYAKIGDLVAAQ 261
           M  K  ++WS MI G+  + GDI++AR LF+ +P  +K++++W  M+DGYA+IG++ AA+
Sbjct: 138 MQGKTQVTWSQMIGGF-ARNGDIATARRLFDEVPHELKNVVTWTVMVDGYARIGEMEAAR 196

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEA------------------------------ 291
           ++F  MPERN F WS MI GY + GN  EA                              
Sbjct: 197 EVFEMMPERNCFVWSSMIHGYFKKGNVTEAAAVFDWVPVRNLEIWNSMIAGYVQNGFGEK 256

Query: 292 -LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
            L  F  M  +G  PD  +V+  +SACAQ+G LD+GK IH  ++   I ++  V + L+D
Sbjct: 257 ALLAFEGMGAEGFEPDEFTVVSVLSACAQLGHLDVGKQIHHMIEHKGIVVNPFVLSGLVD 316

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           MY KCG L  AR +F   T+KN+  +N MI+G  +NG   E L+ F +ME   I  D + 
Sbjct: 317 MYAKCGDLVNARLVFEGFTEKNIFCWNAMISGFAINGKCSEVLEFFGRMEESNIRPDGIT 376

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
           FL VL AC+H GL TE   +   M+ +  IE  ++HY C+VDLL RAG L+ A +++  M
Sbjct: 377 FLTVLSACAHRGLVTEALEVISKMEGY-RIEIGIKHYGCMVDLLGRAGRLKDAYDLIVRM 435

Query: 471 PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLY-VLLSNIYADAGMWEHA 529
           PMKPN  + G +L ACR H ++ +AE V++ + E        + VLLSNIYA +  WE A
Sbjct: 436 PMKPNDTVLGAMLGACRIHSDMNMAEQVMKLICEEPVTGASSHNVLLSNIYAASEKWEKA 495

Query: 530 LRIRKM 535
            R++++
Sbjct: 496 ERMKRI 501



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/148 (34%), Positives = 80/148 (54%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N+ +A  +F+ +   N  + N+MI GY Q+   +KAL  +  M  +G   D +T   VL 
Sbjct: 222 NVTEAAAVFDWVPVRNLEIWNSMIAGYVQNGFGEKALLAFEGMGAEGFEPDEFTVVSVLS 281

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L  G +IH  +   G + + FV++GL+ MY+KCG +  AR VFEG   K++  
Sbjct: 282 ACAQLGHLDVGKQIHHMIEHKGIVVNPFVLSGLVDMYAKCGDLVNARLVFEGFTEKNIFC 341

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKD 208
           WN ++ GF   G+  +  E F  M + +
Sbjct: 342 WNAMISGFAINGKCSEVLEFFGRMEESN 369


>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05750, chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 179/548 (32%), Positives = 290/548 (52%), Gaps = 76/548 (13%)

Query: 36  TTNDLITEPFTLSQLLMSLTSPNTLNMDQA----ERLFNQIYQPNTY----MHNTMIRGY 87
           T + L   PFT S +   L++P  LN  ++     R  +  + PN+     +  + +  Y
Sbjct: 10  TPSQLQLPPFTPSSI--PLSNPTKLNFPRSPNSPHRNISSKFNPNSVDPIVLWTSSLARY 67

Query: 88  TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG--LVEGTEIHGEVVKMGF-L 144
            ++    +A + +  M+  G+  ++ T+  +L AC           + +HG   K G   
Sbjct: 68  CRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYACKYGLDT 127

Query: 145 CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM 204
             V V   LI MYS                               +C ++G AR+VF   
Sbjct: 128 GHVMVGTALIDMYS-------------------------------KCAQLGHARKVF--- 153

Query: 205 PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
                                         ++ +K+ +SWN+M++G+ + G++  A QLF
Sbjct: 154 -----------------------------YNLGVKNSVSWNTMLNGFMRNGEIELAIQLF 184

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
           +EMP R+  SW+ +I+G  +HG  ++AL  F +M   GV  D +S++  ++ACA +GAL 
Sbjct: 185 DEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALT 244

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
           LG W+H F+       ++ +  +LIDMY +CG ++ AR++F  M K+ ++S+N +I G  
Sbjct: 245 LGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFA 304

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444
           +NGF +E+L+ F  M+ EG   D + + G L ACSH+GL  +G  +F +MK    I P++
Sbjct: 305 VNGFADESLEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRI 364

Query: 445 EHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE 504
           EHY C+VDL  RAG LE ALN++E MPMKPN  + G+LL ACR H +V LAE +++ L +
Sbjct: 365 EHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKHLFK 424

Query: 505 LKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEI 564
           L  +    YVLLSNIYA  G W+ A  +R+ M+ R ++K+ G S +EIDG + EFV+G+ 
Sbjct: 425 LDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEIDGKVHEFVAGDN 484

Query: 565 FDVQSEEL 572
           +   ++ +
Sbjct: 485 YHADADNI 492


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 179/503 (35%), Positives = 274/503 (54%), Gaps = 76/503 (15%)

Query: 71  QIYQPN--TYMHNTMIRGYTQS--SNP--QKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
            +  PN  +++ N +IR  T+S   NP    ALS Y+ M+   +L D +T+PF+L++   
Sbjct: 16  HLSHPNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQSINT 75

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
                 G ++H +++ +G   D FV   LI MYS C                        
Sbjct: 76  PH---RGRQLHAQILLLGLANDPFVQTSLINMYSSC------------------------ 108

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
                  G    AR+ FDE+ Q D                                L SW
Sbjct: 109 -------GTPTFARQAFDEITQPD--------------------------------LPSW 129

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC---Q 301
           N++I   AK G +  A++LF++MPE+NV SWS MI GY   G  K AL LFR +      
Sbjct: 130 NAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGS 189

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
            +RP+  ++   +SACA++GAL  GKW+H ++ ++ + +D+++ T+LIDMY KCGS++ A
Sbjct: 190 QLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERA 249

Query: 362 RRIFYSM-TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           + IF ++  +K+V++++ MI    M+G  EE L+ FA+M  +G+  + + F+ VL AC H
Sbjct: 250 KCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVH 309

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
            GL +EG   F+ M    G+ P ++HY C+VDL SRAG +E A N+V+SMPM+P++ +WG
Sbjct: 310 GGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWG 369

Query: 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540
            LL   R H +V   E+ +  L+EL   +   YVLLSN+YA  G W     +R +M  R 
Sbjct: 370 ALLNGARIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRG 429

Query: 541 IKKETGRSVIEIDGNIKEFVSGE 563
           IKK  G S++E+DG I+EF +G+
Sbjct: 430 IKKLPGCSLVEVDGVIREFFAGD 452



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 115/237 (48%), Gaps = 15/237 (6%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKR---KGLLVDNYTYPFVLKA 121
           A +LF+Q+ + N    + MI GY      + ALS + +++      L  + +T   VL A
Sbjct: 145 ARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSA 204

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE--GSEIKDLV 179
           C  L  L  G  +H  + K G   DV +   LI MY+KCG +  A+ +F+  G E KD++
Sbjct: 205 CARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPE-KDVM 263

Query: 180 SWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIM----IDGYRKKKGDISSARI 231
           +W+ ++  F   G   +  E+F  M     + +A+++  +    + G    +G+    R+
Sbjct: 264 AWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRM 323

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
           + E+     +  +  M+D Y++ G +  A  +   MP E +V  W  +++G   HG+
Sbjct: 324 MNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGD 380


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 184/521 (35%), Positives = 295/521 (56%), Gaps = 11/521 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  A  +F +I QP+    N +I G     + ++AL     MKR G+  + +T    LK
Sbjct: 308 DLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALK 367

Query: 121 ACGVLMGLVE-GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           AC   MGL E G ++H  ++KM    D+FV  GL+ MYSKC  +  AR  F     KDL+
Sbjct: 368 ACAG-MGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLI 426

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWS-IMIDGYRKKKGDISSARIL--FEHM 236
           +WN ++ G+ +  E  +A  +F EM  K+ I ++   +    K    +    +      +
Sbjct: 427 AWNAIISGYSQYWEDMEALSLFVEM-HKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGL 485

Query: 237 PIK-----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
            +K     D+   NS+ID Y K   +  A+++F E    ++ S++ MI  YAQ+G  +EA
Sbjct: 486 SVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEA 545

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           L LF EM    ++PD       ++ACA + A + GK +HV + +    +D+    +L++M
Sbjct: 546 LKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNM 605

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y KCGS+D+A R F  +T++ ++S++ MI GL  +G G +AL+ F QM  EG+  + +  
Sbjct: 606 YAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITL 665

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           + VL AC+H+GL TE    F+SM+   G +P  EHY+C++DLL RAG++ +A+ +V  MP
Sbjct: 666 VSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMP 725

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
            + N ++WG LL A R H++V L     E L  L+ +  G +VLL+NIYA AG WE+   
Sbjct: 726 FEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAE 785

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           +R++MR  K+KKE G S IE+   +  F+ G+    +S+E+
Sbjct: 786 VRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEI 826



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 148/524 (28%), Positives = 259/524 (49%), Gaps = 62/524 (11%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           L+S    +K+    LQI A +T + L  +P ++   L++L S    N   A +L ++  +
Sbjct: 62  LLSQCCTTKSLRPGLQIHAHITKSGLSDDP-SIRNHLINLYS-KCRNFGYARKLVDESSE 119

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           P+    + +I GY Q+     AL  +  M   G+  + +T+  VLKAC ++  L  G ++
Sbjct: 120 PDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQV 179

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           HG VV  GF  DVFV N L+ MY+KC     ++ +F+    +++VSWN +   +V+    
Sbjct: 180 HGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFC 239

Query: 195 GKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-----DLISWN 245
           G+A  +F EM     + +  S S M++     + D S  +I+  ++ IK     D  S N
Sbjct: 240 GEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLR-DSSRGKIIHGYL-IKLGYDWDPFSAN 297

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           +++D YAK+GDL  A  +F ++ + ++ SW+ +I G   H + ++AL L  +M   G+ P
Sbjct: 298 ALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICP 357

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           ++ ++  A+ ACA +G  +LG+ +H  + +  +  D+ V   L+DMY KC  L++AR  F
Sbjct: 358 NIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAF 417

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP-------------------- 405
             + +K++I++N +I+G        EAL  F +M  EGI                     
Sbjct: 418 NLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVH 477

Query: 406 --------------KDDLIFLGVLI----ACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
                           D+  +  LI     CSH     +  RIF+     C I   L  +
Sbjct: 478 VCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSH---VEDAERIFEE----CTI-GDLVSF 529

Query: 448 SCLVDLLSRAGELEQALNI---VESMPMKPNLALWGTLLLACRN 488
           + ++   ++ G+ E+AL +   ++ M +KP+  +  +LL AC N
Sbjct: 530 TSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACAN 573



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/402 (29%), Positives = 192/402 (47%), Gaps = 12/402 (2%)

Query: 90  SSNPQKALSFYVNMKRKG-LLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF 148
           S +PQ   +  +N+  KG     + +Y  +L  C     L  G +IH  + K G   D  
Sbjct: 35  SQDPQT--TAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPS 92

Query: 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKD 208
           + N LI +YSKC + G AR + + S   DLVSW+ ++ G+ + G  G A   F EM    
Sbjct: 93  IRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLG 152

Query: 209 AISWSIMIDGYRKKKGDISSARILFEHMPI-------KDLISWNSMIDGYAKIGDLVAAQ 261
                       K    +   RI  +   +        D+   N+++  YAK  + + ++
Sbjct: 153 VKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSK 212

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
           +LF+E+PERNV SW+ +   Y Q     EA+ LF EM+  G++P+  S+   ++AC  + 
Sbjct: 213 RLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLR 272

Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
               GK IH ++ +     D     AL+DMY K G L +A  +F  + + +++S+N +IA
Sbjct: 273 DSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIA 332

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
           G  ++   E+AL+   QM+  GI  +       L AC+  GL   G ++  S+ +   +E
Sbjct: 333 GCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMK-MDME 391

Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             L     LVD+ S+   LE A      +P K +L  W  ++
Sbjct: 392 SDLFVSVGLVDMYSKCDLLEDARMAFNLLPEK-DLIAWNAII 432



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 143/283 (50%), Gaps = 7/283 (2%)

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           N +I+ Y+K  +   A++L +E  E ++ SWS +I GYAQ+G    AL  F EM   GV+
Sbjct: 95  NHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVK 154

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
            +  +    + AC+ V  L +GK +H  +  S    D+ V   L+ MY KC    +++R+
Sbjct: 155 CNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRL 214

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F  + ++NV+S+N + +      F  EA+  F +M   GI  ++     ++ AC+    +
Sbjct: 215 FDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDS 274

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
           + G +I        G +      + LVD+ ++ G+L  A+++ E +  +P++  W  ++ 
Sbjct: 275 SRG-KIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIA 332

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDC--GLYVLLSNIYADAGM 525
            C  H++    E  +E L ++K       ++ L S + A AGM
Sbjct: 333 GCVLHEH---HEQALELLGQMKRSGICPNIFTLSSALKACAGM 372


>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19191, mitochondrial; Flags: Precursor
 gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 185/520 (35%), Positives = 289/520 (55%), Gaps = 10/520 (1%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D A ++F ++ + +    N M+ G+ QS +  KA S +  M+   +  D+ T   +++
Sbjct: 102 SVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQ 161

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD--L 178
           +      L     +H   +++G    V V N  I  Y KCG +  A+ VFE  +  D  +
Sbjct: 162 SASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTV 221

Query: 179 VSWNLVLRGFVECGEMGKAREVFDEMPQ---KDAISWSIMIDGYRKKKGDISSARILFEH 235
           VSWN + + +   GE   A  ++  M +   K  +S  I +    +    ++  R++  H
Sbjct: 222 VSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSH 281

Query: 236 M----PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
                  +D+ + N+ I  Y+K  D  +A+ LF+ M  R   SW++MI GYA+ G+  EA
Sbjct: 282 AIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEA 341

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD-MIVQTALID 350
           L LF  M+  G +PD+++++  IS C + G+L+ GKWI           D +++  ALID
Sbjct: 342 LALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALID 401

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           MY KCGS+ EAR IF +  +K V+++  MIAG  +NG   EALK F++M       + + 
Sbjct: 402 MYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHIT 461

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
           FL VL AC+HSG   +G+  F  MK+   I P L+HYSC+VDLL R G+LE+AL ++ +M
Sbjct: 462 FLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNM 521

Query: 471 PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530
             KP+  +WG LL AC+ H+NV +AE   E L  L+      YV ++NIYA AGMW+   
Sbjct: 522 SAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFA 581

Query: 531 RIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570
           RIR +M++R IKK  G SVI+++G    F  GE   V++E
Sbjct: 582 RIRSIMKQRNIKKYPGESVIQVNGKNHSFTVGEHGHVENE 621



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/422 (27%), Positives = 186/422 (44%), Gaps = 30/422 (7%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N  IR     ++P ++L  +  MKR G   +N+T+PFV KAC  L  +     +H  ++K
Sbjct: 21  NLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLIK 80

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
             F  DVFV    + M+ KC  +  A  VFE    +D  +WN +L GF + G   KA  +
Sbjct: 81  SPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSL 140

Query: 201 FDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-------DLISWNSMIDGYAK 253
           F EM   +    S+ +    +      S ++L     +         +   N+ I  Y K
Sbjct: 141 FREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGK 200

Query: 254 IGDLVAAQQLFNEMP--ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
            GDL +A+ +F  +   +R V SW+ M   Y+  G   +A  L+  ML +  +PD+ + +
Sbjct: 201 CGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFI 260

Query: 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
              ++C     L  G+ IH          D+      I MY K      AR +F  MT +
Sbjct: 261 NLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSR 320

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
             +S+ VMI+G    G  +EAL  F  M   G   D +  L ++  C            F
Sbjct: 321 TCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGK----------F 370

Query: 432 QSMKRHCGIEPKLEHYSC----------LVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
            S++    I+ + + Y C          L+D+ S+ G + +A +I ++ P K  +  W T
Sbjct: 371 GSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEK-TVVTWTT 429

Query: 482 LL 483
           ++
Sbjct: 430 MI 431



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 102/203 (50%), Gaps = 7/203 (3%)

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           +V +W++ I       +P E+L LFREM   G  P+  +      ACA++  +   + +H
Sbjct: 16  SVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVH 75

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
             + +S    D+ V TA +DM++KC S+D A ++F  M +++  ++N M++G   +G  +
Sbjct: 76  AHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTD 135

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR---HCGIEPKLEHY 447
           +A   F +M    I  D +  + ++ + S      +  ++ ++M       G++ ++   
Sbjct: 136 KAFSLFREMRLNEITPDSVTVMTLIQSASFE----KSLKLLEAMHAVGIRLGVDVQVTVA 191

Query: 448 SCLVDLLSRAGELEQALNIVESM 470
           +  +    + G+L+ A  + E++
Sbjct: 192 NTWISTYGKCGDLDSAKLVFEAI 214


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 170/432 (39%), Positives = 259/432 (59%), Gaps = 6/432 (1%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D+F  N ++  Y +   +  AR++FE    +D+VSWN +L G+ + G + +ARE+F +MP
Sbjct: 25  DLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYKMP 84

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
            K+ ISW+ ++  Y  + G I  A+ LFE      L+SWN ++ G+ +       + LF+
Sbjct: 85  LKNGISWNGLLAAY-VQNGRIEDAKRLFESKMDWTLVSWNCLMGGFVR-----KRRNLFD 138

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
            MP+R+  SWS MI GY+Q+G  +EAL+ F EM     R +  S   A+S C+ + AL+L
Sbjct: 139 NMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALEL 198

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
           G+ +H  + ++       V  AL+ MY KCGS+DEAR  F  + +K+V+S+N MI G   
Sbjct: 199 GRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYAR 258

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           +GFGEEAL  F  M+T GI  DD   + VL ACSH+GL  +G   F SM R  GI  KL 
Sbjct: 259 HGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLV 318

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
           HY+C+VDLL RAG+LE+A N++++MP +P+ A WG LL A R H N  L E   + + E+
Sbjct: 319 HYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEM 378

Query: 506 KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIF 565
           +  + G+Y+LLS +YA +G W  A ++R  MR + +KK  G S +E+   I  F  G+  
Sbjct: 379 EPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNKIHTFKVGDTS 438

Query: 566 DVQSEELELVIQ 577
              ++++   ++
Sbjct: 439 HPHTDKIYTFLE 450



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 179/382 (46%), Gaps = 56/382 (14%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
            D A  LF+++ + + +  N M+ GY ++ + + A + +  M  + ++    ++  +L  
Sbjct: 11  FDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIV----SWNAMLSG 66

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
                 + E  EI     KM  L +    NGL+  Y + G +  A+ +FE      LVSW
Sbjct: 67  YAQNGFVDEAREI---FYKMP-LKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLVSW 122

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY---------------------R 220
           N ++ GFV      K R +FD MPQ+D+ISWS MI GY                     R
Sbjct: 123 NCLMGGFVR-----KRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCER 177

Query: 221 KKKGDISSARILFEHMPIKDL--------------ISW---NSMIDGYAKIGDLVAAQQL 263
             +   + A     ++   +L                W   N+++  Y K G +  A+  
Sbjct: 178 LNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDA 237

Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL 323
           F E+ E++V SW+ MI GYA+HG  +EAL +F  M   G+RPD  +++  ++AC+  G +
Sbjct: 238 FQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLV 297

Query: 324 DLGKWIHVFMKRSR-ITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIA 381
           D G      M R   IT  ++  T ++D+  + G L+EA+ +  +M  + +  ++  ++ 
Sbjct: 298 DQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLG 357

Query: 382 GLGMNG---FGEEALKCFAQME 400
              ++G    GE+A +   +ME
Sbjct: 358 ASRIHGNTELGEKAAQIIFEME 379



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 148/306 (48%), Gaps = 49/306 (16%)

Query: 215 MIDGY-RKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
           MI GY R  K D+  AR LF+ MP +DL SWN M+ GY +  DL  A+ LF  MPER++ 
Sbjct: 1   MISGYLRNHKFDL--ARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIV 58

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
           SW+ M+ GYAQ+G   EA  +F +M  +    + IS  G ++A  Q G ++  K +    
Sbjct: 59  SWNAMLSGYAQNGFVDEAREIFYKMPLK----NGISWNGLLAAYVQNGRIEDAKRLF--- 111

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
             S++   ++    L+  +++     + R +F +M +++ IS++ MIAG   NG  EEAL
Sbjct: 112 -ESKMDWTLVSWNCLMGGFVR-----KRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEAL 165

Query: 394 KCFAQMETEGIPKDDLIFLGVLIACS-----------HSGLATEGYRI-------FQSMK 435
             F +M+ +    +   F   L  CS           H  L   GY+          +M 
Sbjct: 166 HFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMY 225

Query: 436 RHCG------------IEPKLEHYSCLVDLLSRAGELEQALNIVESMP---MKPNLALWG 480
             CG            +E  +  ++ ++   +R G  E+AL + E M    ++P+ A   
Sbjct: 226 CKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMV 285

Query: 481 TLLLAC 486
           ++L AC
Sbjct: 286 SVLAAC 291



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 125/275 (45%), Gaps = 18/275 (6%)

Query: 31  ILAQLTTNDLITEPFTL--SQLLMSLTSPNTLN---MDQAERLFNQIYQPNTYMHNTMIR 85
           +LA    N  I +   L  S++  +L S N L    + +   LF+ + Q ++   + MI 
Sbjct: 94  LLAAYVQNGRIEDAKRLFESKMDWTLVSWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIA 153

Query: 86  GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC 145
           GY+Q+   ++AL F+V M+R    ++  ++   L  C  +  L  G ++H  +VK G+  
Sbjct: 154 GYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQT 213

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
             +V N L+ MY KCG +  AR  F+    KD+VSWN ++ G+   G   +A  VF+ M 
Sbjct: 214 GWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMK 273

Query: 206 Q-----KDAISWSIMIDGYRKKKGDISSARILFEHMP-----IKDLISWNSMIDGYAKIG 255
                  DA   S++        G +      F  M         L+ +  M+D   + G
Sbjct: 274 TTGIRPDDATMVSVLAAC--SHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAG 331

Query: 256 DLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPK 289
            L  AQ L   MP E +  +W  ++     HGN +
Sbjct: 332 QLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTE 366



 Score = 46.2 bits (108), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 36/182 (19%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D+A   F +I + +    NTMI GY +    ++AL+ +  MK  G+  D+ T   VL 
Sbjct: 230 SIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLA 289

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC     + +G+E              + +N   G+ +K  H  C         + DL+ 
Sbjct: 290 ACSHAGLVDQGSEY------------FYSMNRDYGITAKLVHYTC---------MVDLLG 328

Query: 181 WNLVLRGFVECGEMGKAREVFDEMP-QKDAISWSIMIDGYRKKKGDI----SSARILFEH 235
                      G++ +A+ +   MP + DA +W  ++ G  +  G+      +A+I+FE 
Sbjct: 329 ---------RAGQLEEAQNLMKNMPFEPDAATWGALL-GASRIHGNTELGEKAAQIIFEM 378

Query: 236 MP 237
            P
Sbjct: 379 EP 380


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 176/510 (34%), Positives = 287/510 (56%), Gaps = 9/510 (1%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A ++F  +   +    N MI G+ Q+ N   AL     MK +G+ +D  T   +L  
Sbjct: 172 LDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPV 231

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C     ++ G  IH  V+K G   DVFV N LI MYSK G +  A+ VF+  E++DLVSW
Sbjct: 232 CAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSW 291

Query: 182 NLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARIL----F 233
           N ++  + +  +   A   F  M     + D ++   +   + +      S  IL     
Sbjct: 292 NSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIR 351

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
                KD++  N++++ YAK+G +  A  +F+++P ++  SW+ ++ GY Q+G   EA+ 
Sbjct: 352 REWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAID 411

Query: 294 LFREML-CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            +  M  C+   P+  + +  I A + VGAL  G  IH  + ++ + +D+ V T LID+Y
Sbjct: 412 AYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLY 471

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCG L++A  +FY + +   + +N +IA LG++G GEEAL+ F  M  E +  D + F+
Sbjct: 472 GKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFV 531

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            +L ACSHSGL  EG + F  M++  GI+P L+HY C+VDLL RAG LE+A  +V +MP+
Sbjct: 532 SLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPI 591

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           +P+ ++WG LL AC+ + N  L  +  + L+E+ +++ G YVLLSNIYA+   WE  +++
Sbjct: 592 QPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKV 651

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
           R + R R ++K  G S + +    + F +G
Sbjct: 652 RSLARDRGLRKTPGWSSVVVGSKAEVFYTG 681



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 133/486 (27%), Positives = 248/486 (51%), Gaps = 23/486 (4%)

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALS----FYVNMKRKGLLVDNYTYPFVLKACGV 124
           F+ I++ N +  N++I  Y +     +A++     +       L  D YT+P +LKAC  
Sbjct: 77  FDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC-- 134

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
            + LV+G ++H  V KMGF  DVFV   L+ +YS+ G +  A  VF    +KD+ SWN +
Sbjct: 135 -VSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAM 193

Query: 185 LRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARI---LFEHMP 237
           + GF + G    A  V + M     + D I+ + ++    +    I+   I   + +H  
Sbjct: 194 ISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGL 253

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
             D+   N++I+ Y+K G L  AQ +F++M  R++ SW+ +I  Y Q+ +P  AL  F+ 
Sbjct: 254 DSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKG 313

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF-MKRSRITMDMIVQTALIDMYMKCG 356
           M   G+RPD+++V+   S  +Q+    + + I  F ++R  +  D+++  AL++MY K G
Sbjct: 314 MQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLG 373

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME--TEGIPKDDLIFLGV 414
            ++ A  +F  + +K+ IS+N ++ G   NG   EA+  +  ME   + IP     ++ +
Sbjct: 374 YMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQG-TWVSI 432

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           + A SH G   +G +I   + ++  +   +   +CL+DL  + G LE A+++   +P   
Sbjct: 433 IPAYSHVGALQQGMKIHAKLIKN-SLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDT 491

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLV--ELKADDCGLYVLLSNIYADAGMWEHALRI 532
           ++  W  ++ +   H     A  + + ++   +KAD      LLS   + +G+ +   + 
Sbjct: 492 SVP-WNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSAC-SHSGLVDEGQKC 549

Query: 533 RKMMRK 538
             +M+K
Sbjct: 550 FDIMQK 555



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 173/369 (46%), Gaps = 29/369 (7%)

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           ++H  ++  G   ++ +   LI +Y   G +  +RS F+    K++ SWN ++  +V  G
Sbjct: 40  KLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFG 99

Query: 193 EM----------------GKAREVFDEMPQ--KDAISWSIMIDGYRKKKGDISSARILFE 234
           +                 G  R  F   P   K  +S   ++DG   KK      ++ FE
Sbjct: 100 KYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVS---LVDG---KKVHCCVFKMGFE 153

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
                D+    S++  Y++ G L  A ++F +MP ++V SW+ MI G+ Q+GN   AL +
Sbjct: 154 ----DDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGV 209

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
              M  +GV+ D I+V   +  CAQ   +  G  IH+ + +  +  D+ V  ALI+MY K
Sbjct: 210 LNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSK 269

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
            G L +A+ +F  M  ++++S+N +IA    N     AL+ F  M+  GI  D L  + +
Sbjct: 270 FGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSL 329

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
               S          I   + R   ++  +   + LV++ ++ G +  A  + + +P K 
Sbjct: 330 TSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKD 389

Query: 475 NLALWGTLL 483
            ++ W TL+
Sbjct: 390 TIS-WNTLV 397



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 23/184 (12%)

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
           ++C  V A    K +H  +     + ++++ T LI++Y+  G +  +R  F  + KKN+ 
Sbjct: 30  NSCVNVNAT---KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIF 86

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMET----EGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           S+N +I+     G   EA+ C  Q+ +      +  D   F  +L AC           +
Sbjct: 87  SWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC---------VSL 137

Query: 431 FQSMKRHC-----GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
               K HC     G E  +   + LV L SR G L+ A  +   MP+K ++  W  ++  
Sbjct: 138 VDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVK-DVGSWNAMISG 196

Query: 486 -CRN 488
            C+N
Sbjct: 197 FCQN 200


>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 555

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 176/499 (35%), Positives = 277/499 (55%), Gaps = 56/499 (11%)

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           VLK+C     L    + H ++V  GF    +++N L+ +Y   G +G A+ VFE      
Sbjct: 33  VLKSCVSFRNL---AKTHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFEDITAPS 89

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMP-------------------------QKDAISW 212
              WN +++G        K+ E+F  M                          + + I  
Sbjct: 90  TTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHG 149

Query: 213 SIMIDGYRKK------------------KGDISSARILFEHMPIKDLISWNSMIDGYAKI 254
            ++++GY                       D+  A  LF+ MP  +++ WNS++ GY + 
Sbjct: 150 RVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKRALYLFDEMPDSNVVGWNSLLAGYVRR 209

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
           GD   A+++F+EMPERNV +W+IM+ G+AQ+G  K AL LF +M   GV  D ++++ A+
Sbjct: 210 GDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAAL 269

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIV----QTALIDMYMKCGSLDEARRIFYSMTK 370
           SACA++G L LGKWIH +++R+  +  + V      ALI MY  CG++D A ++F  + +
Sbjct: 270 SACAELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGAMDLAYKLFEEIPQ 329

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEG---IPKDDLIFLGVLIACSHSGLATEG 427
           +N +S++ +I G    G G EA++ F  M   G   +  D++ F+G L ACSH+GL ++G
Sbjct: 330 RNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDG 389

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
            R+FQSM +  G+ P++EHY C+VDLLSRAG L +AL+++ESMPMKPN A+WG LL  CR
Sbjct: 390 IRLFQSMHKTFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCR 449

Query: 488 NHQNVTLAEVVVEGL---VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
            H+N  +   V + L   ++      G ++LL+N+YA  G W+    +R+ M    +KK 
Sbjct: 450 LHKNDEIVSHVAKHLSFEIDPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKP 509

Query: 545 TGRSVIEIDGNIKEFVSGE 563
           +GRS IEI+G +  F+ GE
Sbjct: 510 SGRSWIEINGVLCSFMVGE 528



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/430 (29%), Positives = 211/430 (49%), Gaps = 69/430 (16%)

Query: 9   FSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERL 68
           FS+    VS   ++KT        AQ+  +    + + L+ LL    S  +L    A+++
Sbjct: 31  FSVLKSCVSFRNLAKTH-------AQIVVSGFSQKNYILNHLLSLYISFGSLG--SAQKV 81

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           F  I  P+T + N +I+G+T+S   +K++  +  M   G+  + +TY F+L AC      
Sbjct: 82  FEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLF 141

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG---CARSVFEGSEIKD--LVSWNL 183
            EG +IHG V+  G+  +++V   LI +Y+  G  G     R+++   E+ D  +V WN 
Sbjct: 142 REGEQIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKRALYLFDEMPDSNVVGWNS 201

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM------- 236
           +L G+V  G+   AR+VFDEMP+++  +W+IM+ G+  + G    A  LF+ M       
Sbjct: 202 LLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGF-AQNGQCKLALSLFDQMRRAGVEL 260

Query: 237 -------------PIKDLI-----------SW------------NSMIDGYAKIGDLVAA 260
                         + DL            +W            N++I  YA  G +  A
Sbjct: 261 DQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGAMDLA 320

Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG---VRPDVISVMGAISAC 317
            +LF E+P+RN  SWS +I G+A+ G   EA+ +F+ MLC G   VRPD I+ +GA++AC
Sbjct: 321 YKLFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTAC 380

Query: 318 AQVGALDLGKWIHVFMKRSRITMDMIVQT----ALIDMYMKCGSLDEARRIFYSMT-KKN 372
           +  G +  G  I +F    + T  +I Q      ++D+  + G L EA  +  SM  K N
Sbjct: 381 SHAGLISDG--IRLFQSMHK-TFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPN 437

Query: 373 VISYNVMIAG 382
              +  +++G
Sbjct: 438 NAVWGALLSG 447


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 176/510 (34%), Positives = 287/510 (56%), Gaps = 9/510 (1%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A ++F  +   +    N MI G+ Q+ N   AL     MK +G+ +D  T   +L  
Sbjct: 172 LDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPV 231

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C     ++ G  IH  V+K G   DVFV N LI MYSK G +  A+ VF+  E++DLVSW
Sbjct: 232 CAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSW 291

Query: 182 NLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARIL----F 233
           N ++  + +  +   A   F  M     + D ++   +   + +      S  IL     
Sbjct: 292 NSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIR 351

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
                KD++  N++++ YAK+G +  A  +F+++P ++  SW+ ++ GY Q+G   EA+ 
Sbjct: 352 REWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAID 411

Query: 294 LFREML-CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            +  M  C+   P+  + +  I A + VGAL  G  IH  + ++ + +D+ V T LID+Y
Sbjct: 412 AYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLY 471

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCG L++A  +FY + +   + +N +IA LG++G GEEAL+ F  M  E +  D + F+
Sbjct: 472 GKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFV 531

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            +L ACSHSGL  EG + F  M++  GI+P L+HY C+VDLL RAG LE+A  +V +MP+
Sbjct: 532 SLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPI 591

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           +P+ ++WG LL AC+ + N  L  +  + L+E+ +++ G YVLLSNIYA+   WE  +++
Sbjct: 592 QPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKV 651

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
           R + R R ++K  G S + +    + F +G
Sbjct: 652 RSLARDRGLRKTPGWSSVVVGSKAEVFYTG 681



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 133/486 (27%), Positives = 248/486 (51%), Gaps = 23/486 (4%)

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALS----FYVNMKRKGLLVDNYTYPFVLKACGV 124
           F+ I++ N +  N++I  Y +     +A++     +       L  D YT+P +LKAC  
Sbjct: 77  FDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC-- 134

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
            + LV+G ++H  V KMGF  DVFV   L+ +YS+ G +  A  VF    +KD+ SWN +
Sbjct: 135 -VSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAM 193

Query: 185 LRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARI---LFEHMP 237
           + GF + G    A  V + M     + D I+ + ++    +    I+   I   + +H  
Sbjct: 194 ISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGL 253

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
             D+   N++I+ Y+K G L  AQ +F++M  R++ SW+ +I  Y Q+ +P  AL  F+ 
Sbjct: 254 DSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKG 313

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF-MKRSRITMDMIVQTALIDMYMKCG 356
           M   G+RPD+++V+   S  +Q+    + + I  F ++R  +  D+++  AL++MY K G
Sbjct: 314 MQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLG 373

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET--EGIPKDDLIFLGV 414
            ++ A  +F  + +K+ IS+N ++ G   NG   EA+  +  ME   + IP     ++ +
Sbjct: 374 YMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQG-TWVSI 432

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           + A SH G   +G +I   + ++  +   +   +CL+DL  + G LE A+++   +P   
Sbjct: 433 IPAYSHVGALQQGMKIHAKLIKN-SLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDT 491

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLV--ELKADDCGLYVLLSNIYADAGMWEHALRI 532
           ++  W  ++ +   H     A  + + ++   +KAD      LLS   + +G+ +   + 
Sbjct: 492 SVP-WNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSAC-SHSGLVDEGQKC 549

Query: 533 RKMMRK 538
             +M+K
Sbjct: 550 FDIMQK 555



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 173/369 (46%), Gaps = 29/369 (7%)

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           ++H  ++  G   ++ +   LI +Y   G +  +RS F+    K++ SWN ++  +V  G
Sbjct: 40  KLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFG 99

Query: 193 EM----------------GKAREVFDEMPQ--KDAISWSIMIDGYRKKKGDISSARILFE 234
           +                 G  R  F   P   K  +S   ++DG   KK      ++ FE
Sbjct: 100 KYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVS---LVDG---KKVHCCVFKMGFE 153

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
                D+    S++  Y++ G L  A ++F +MP ++V SW+ MI G+ Q+GN   AL +
Sbjct: 154 ----DDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGV 209

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
              M  +GV+ D I+V   +  CAQ   +  G  IH+ + +  +  D+ V  ALI+MY K
Sbjct: 210 LNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSK 269

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
            G L +A+ +F  M  ++++S+N +IA    N     AL+ F  M+  GI  D L  + +
Sbjct: 270 FGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSL 329

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
               S          I   + R   ++  +   + LV++ ++ G +  A  + + +P K 
Sbjct: 330 TSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKD 389

Query: 475 NLALWGTLL 483
            ++ W TL+
Sbjct: 390 TIS-WNTLV 397



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 23/184 (12%)

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
           ++C  V A    K +H  +     + ++++ T LI++Y+  G +  +R  F  + KKN+ 
Sbjct: 30  NSCVNVNAT---KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIF 86

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMET----EGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           S+N +I+     G   EA+ C  Q+ +      +  D   F  +L AC           +
Sbjct: 87  SWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC---------VSL 137

Query: 431 FQSMKRHC-----GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
               K HC     G E  +   + LV L SR G L+ A  +   MP+K ++  W  ++  
Sbjct: 138 VDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVK-DVGSWNAMISG 196

Query: 486 -CRN 488
            C+N
Sbjct: 197 FCQN 200


>gi|115458312|ref|NP_001052756.1| Os04g0414800 [Oryza sativa Japonica Group]
 gi|32479728|emb|CAE01515.1| OJ991214_12.4 [Oryza sativa Japonica Group]
 gi|113564327|dbj|BAF14670.1| Os04g0414800 [Oryza sativa Japonica Group]
 gi|125590342|gb|EAZ30692.1| hypothetical protein OsJ_14749 [Oryza sativa Japonica Group]
          Length = 545

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 169/473 (35%), Positives = 275/473 (58%), Gaps = 2/473 (0%)

Query: 79  MHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEV 138
           + N ++    + +  + AL+ +  ++      D +++P +L AC     L  G  +H   
Sbjct: 72  LRNAVLASLARHAPLRDALAQFNLLRGGASRPDAFSFPPLLCACARASSLPTGASLHAAA 131

Query: 139 VKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAR 198
           +++G   D+FV   LI  Y +CG    AR++F+       VSW  ++  +V  G++  AR
Sbjct: 132 IRLGVDADLFVRTALIQFYGRCGAAAAARALFDSLTNPSEVSWTAIVTAYVNSGDILTAR 191

Query: 199 EVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLV 258
           E+FD++P ++ + W+ M+DGY  K GD+  AR LF+ MP +   ++ S+I GY   G++ 
Sbjct: 192 ELFDQIPHRNVVHWNAMVDGY-VKCGDLEGARKLFDEMPERTPAAYTSLIGGYLNAGNMG 250

Query: 259 AAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACA 318
           AA+ LF+++ +R++F+WS MI G AQ+G P EAL +F E   Q + PD + ++G +SAC+
Sbjct: 251 AARTLFDKLEDRDLFAWSTMISGCAQNGYPGEALRIFNEFQKQEICPDELVIVGLMSACS 310

Query: 319 QVGALDLGKWIHVFMKRSRITMDMI-VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYN 377
           Q+G + L +WI  ++    I M+ + V   LI+M  KCG+++ A  +F SM+ ++V SY 
Sbjct: 311 QLGNITLARWIEGYIMIYPIDMNNVHVMAGLINMNAKCGNMERATLLFESMSVRDVFSYC 370

Query: 378 VMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRH 437
            M+ G  ++G   +A++ F+QM  EGI  D+  F  VL ACSH+GL  EG R F  MK  
Sbjct: 371 SMMQGHCLHGSASKAVELFSQMLLEGITPDNAAFTVVLTACSHAGLVEEGKRYFDMMKNE 430

Query: 438 CGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEV 497
             I P  +HY+CLV LL R G L  A  +++SMP +P+   WG LL  C+ H ++ L ++
Sbjct: 431 YMIVPSGDHYACLVSLLGRFGMLRDAYELIKSMPGEPHPGAWGALLGGCKFHCDIELGKI 490

Query: 498 VVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
             + L E++ ++ G YV LSNIYA+   W +    R  M  R I K  G +++
Sbjct: 491 AAKKLFEIEPENAGNYVSLSNIYANIDRWGNVSETRAEMTGRGITKIAGCTLV 543



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 151/343 (44%), Gaps = 56/343 (16%)

Query: 39  DLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALS 98
           D +T P  +S   +     N+ ++  A  LF+QI   N    N M+ GY +  + + A  
Sbjct: 164 DSLTNPSEVSWTAIVTAYVNSGDILTARELFDQIPHRNVVHWNAMVDGYVKCGDLEGARK 223

Query: 99  FYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYS 158
            +  M  +      YT                                      LIG Y 
Sbjct: 224 LFDEMPERTPAA--YT-------------------------------------SLIGGYL 244

Query: 159 KCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDG 218
             G+MG AR++F+  E +DL +W+ ++ G  + G  G+A  +F+E  +++     ++I G
Sbjct: 245 NAGNMGAARTLFDKLEDRDLFAWSTMISGCAQNGYPGEALRIFNEFQKQEICPDELVIVG 304

Query: 219 YR---KKKGDISSAR-----ILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER 270
                 + G+I+ AR     I+   + + ++     +I+  AK G++  A  LF  M  R
Sbjct: 305 LMSACSQLGNITLARWIEGYIMIYPIDMNNVHVMAGLINMNAKCGNMERATLLFESMSVR 364

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           +VFS+  M+ G+  HG+  +A+ LF +ML +G+ PD  +    ++AC+  G ++ GK   
Sbjct: 365 DVFSYCSMMQGHCLHGSASKAVELFSQMLLEGITPDNAAFTVVLTACSHAGLVEEGKRYF 424

Query: 331 VFMKRSRITMDMIVQTA-----LIDMYMKCGSLDEARRIFYSM 368
             MK       MIV +      L+ +  + G L +A  +  SM
Sbjct: 425 DMMKNEY----MIVPSGDHYACLVSLLGRFGMLRDAYELIKSM 463



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 109/239 (45%), Gaps = 12/239 (5%)

Query: 58  NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF 117
           N  NM  A  LF+++   + +  +TMI G  Q+  P +AL  +   +++ +  D      
Sbjct: 245 NAGNMGAARTLFDKLEDRDLFAWSTMISGCAQNGYPGEALRIFNEFQKQEICPDELVIVG 304

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGF-LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK 176
           ++ AC  L  +     I G ++     + +V V+ GLI M +KCG+M  A  +FE   ++
Sbjct: 305 LMSACSQLGNITLARWIEGYIMIYPIDMNNVHVMAGLINMNAKCGNMERATLLFESMSVR 364

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARIL 232
           D+ S+  +++G    G   KA E+F +M       D  ++++++       G +   +  
Sbjct: 365 DVFSYCSMMQGHCLHGSASKAVELFSQMLLEGITPDNAAFTVVLTAC-SHAGLVEEGKRY 423

Query: 233 F-----EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQH 285
           F     E+M +     +  ++    + G L  A +L   MP E +  +W  ++ G   H
Sbjct: 424 FDMMKNEYMIVPSGDHYACLVSLLGRFGMLRDAYELIKSMPGEPHPGAWGALLGGCKFH 482


>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 179/548 (32%), Positives = 290/548 (52%), Gaps = 76/548 (13%)

Query: 36  TTNDLITEPFTLSQLLMSLTSPNTLNMDQA----ERLFNQIYQPNTY----MHNTMIRGY 87
           T + L   PFT S +   L++P  LN  ++     R  +  + PN+     +  + +  Y
Sbjct: 10  TPSQLQLPPFTPSSI--PLSNPTKLNFPRSPNSPHRNISSKFNPNSVDPIVLWTSSLARY 67

Query: 88  TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG--LVEGTEIHGEVVKMGF-L 144
            ++    +A + +  M+  G+  ++ T+  +L AC           + +HG   K G   
Sbjct: 68  CRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHGYACKYGLDT 127

Query: 145 CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM 204
             V V   LI MYS                               +C ++G AR+VF   
Sbjct: 128 GHVMVGTALIDMYS-------------------------------KCAQLGHARKVF--- 153

Query: 205 PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
                                         ++ +K+ +SWN+M++G+ + G++  A QLF
Sbjct: 154 -----------------------------YNLGVKNSVSWNTMLNGFMRNGEIELAIQLF 184

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
           +EMP R+  SW+ +I+G  +HG  ++AL  F +M   GV  D +S++  ++ACA +GAL 
Sbjct: 185 DEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALT 244

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
           LG W+H F+       ++ +  +LIDMY +CG ++ AR++F  M K+ ++S+N +I G  
Sbjct: 245 LGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFA 304

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444
           +NGF +E+L+ F  M+ EG   D + + G L ACSH+GL  +G  +F +MK    I P++
Sbjct: 305 VNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRI 364

Query: 445 EHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE 504
           EHY C+VDL  RAG LE ALN++E MPMKPN  + G+LL ACR H +V LAE +++ L +
Sbjct: 365 EHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKHLFK 424

Query: 505 LKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEI 564
           L  +    YVLLSNIYA  G W+ A  +R+ M+ R ++K+ G S +EIDG + EFV+G+ 
Sbjct: 425 LDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEIDGKVHEFVAGDN 484

Query: 565 FDVQSEEL 572
           +   ++ +
Sbjct: 485 YHADADNI 492


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 176/526 (33%), Positives = 307/526 (58%), Gaps = 7/526 (1%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +++A RLF  + + +    N MI G  Q+     AL  + +M++ GL  D+ T   +L A
Sbjct: 299 LEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPA 358

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
              L G  +G EIHG +V+     DVF+V+ L+ +Y KC  +  A++VF+ ++  D+V  
Sbjct: 359 LTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIG 418

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI-------LFE 234
           + ++ G+V       A ++F  +        ++M+         +++ RI       + +
Sbjct: 419 STMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLK 478

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
           +         ++++D Y+K G L  +  +F++M  ++  +W+ MI  +AQ+G P+EAL L
Sbjct: 479 NAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDL 538

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           FR+M+ +GV+ + +++   +SACA + A+  GK IH  + +  I  D+  ++ALIDMY K
Sbjct: 539 FRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGK 598

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG+L+ A R+F  M +KN +S+N +I+  G +G  +E++     M+ EG   D + FL +
Sbjct: 599 CGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLAL 658

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           + AC+H+G   EG R+F+ M     IEP++EH SC+VDL SRAG+L++A+  +  MP KP
Sbjct: 659 ISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKP 718

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           +  +WG LL ACR H+NV LAE+  + L +L   +CG YVL+SNI A AG W+   ++R+
Sbjct: 719 DAGIWGALLHACRVHRNVELAEIASQELFKLDPHNCGYYVLMSNINAVAGRWDGVSKMRR 778

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFV 580
           +M+ +K++K  G S ++++     FV+ +     SEE+ + ++S +
Sbjct: 779 LMKDKKVQKIPGYSWVDVNNTSHLFVAADKNHPDSEEIYMSLKSLI 824



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 135/484 (27%), Positives = 236/484 (48%), Gaps = 12/484 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A  +F+ + + +  + N M+ GY ++ +   A+  +  M+  G   +  T    L  
Sbjct: 198 LDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSV 257

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C     L+ G ++H   VK G   +V V N L+ MY+KC  +  A  +F      DLV+W
Sbjct: 258 CAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTW 317

Query: 182 NLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARI---LFE 234
           N ++ G V+ G +  A  +F +M     Q D+++ + ++    +  G      I   +  
Sbjct: 318 NGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVR 377

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
           +    D+   ++++D Y K  D+  AQ +F+     +V   S MI GY  +   + A+ +
Sbjct: 378 NCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKM 437

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           FR +L  G++P+ + V   + ACA + A+ +G+ +H ++ ++       V++AL+DMY K
Sbjct: 438 FRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSK 497

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG LD +  +F  M+ K+ +++N MI+    NG  EEAL  F QM  EG+  +++    +
Sbjct: 498 CGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSI 557

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L AC+       G  I   + +   I   L   S L+D+  + G LE AL + E MP K 
Sbjct: 558 LSACAGLPAIYYGKEIHGIIIKG-PIRADLFAESALIDMYGKCGNLELALRVFEHMPEK- 615

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLSNIYADAGMWEHALRI 532
           N   W +++ A   H  V  +  ++  + E   KAD      L+S   A AG  +  LR+
Sbjct: 616 NEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISAC-AHAGQVQEGLRL 674

Query: 533 RKMM 536
            + M
Sbjct: 675 FRCM 678



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 114/421 (27%), Positives = 210/421 (49%), Gaps = 29/421 (6%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNM--KRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEV 138
           N +IRG+T + + + A+ FYV M         D +T P+V+K+C  L  L  G  +H   
Sbjct: 114 NWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCAALGALHLGRLVHRTT 173

Query: 139 VKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAR 198
             +G   D++V + LI MY+  G +  AR VF+G + +D V WN+++ G+V+ G++  A 
Sbjct: 174 RALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAV 233

Query: 199 EVFDEM------PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-----DLISWNSM 247
            +F  M      P    ++  + +      + D+ S  +    + +K     ++   N++
Sbjct: 234 GLFRVMRASGCDPNFATLACFLSVCA---AEADLLSG-VQLHTLAVKYGLEPEVAVANTL 289

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           +  YAK   L  A +LF  MP  ++ +W+ MI G  Q+G   +AL LF +M   G++PD 
Sbjct: 290 VSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDS 349

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           +++   + A  ++     GK IH ++ R+   +D+ + +AL+D+Y KC  +  A+ +F +
Sbjct: 350 VTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDA 409

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS-----HSG 422
               +V+  + MI+G  +N   E A+K F  +   GI  + ++    L AC+       G
Sbjct: 410 TKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIG 469

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
               GY +  + +  C +E      S L+D+ S+ G L+ +  +   M  K  +  W ++
Sbjct: 470 QELHGYVLKNAYEGRCYVE------SALMDMYSKCGRLDLSHYMFSKMSAKDEVT-WNSM 522

Query: 483 L 483
           +
Sbjct: 523 I 523



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 166/370 (44%), Gaps = 20/370 (5%)

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFL-----CDVFVVNGLIGMYSKCGHMGCARSVFEG 172
           +L+ C     L  G  IH   V  G L         +   L+GMY        A +VF  
Sbjct: 42  LLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFRDAVAVFSS 101

Query: 173 ---SEIKDLVSWNLVLRGFVECGEMGKAREVFDEM------PQKDAISWSIMIDGYRKKK 223
              +     + WN ++RGF   G    A   + +M      P+ D  +   ++       
Sbjct: 102 LPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSC-AAL 160

Query: 224 GDISSARILFEHMPI----KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMI 279
           G +   R++          +D+   +++I  YA  G L  A+++F+ M ER+   W++M+
Sbjct: 161 GALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMM 220

Query: 280 DGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRIT 339
           DGY + G+   A+ LFR M   G  P+  ++   +S CA    L  G  +H    +  + 
Sbjct: 221 DGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLE 280

Query: 340 MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
            ++ V   L+ MY KC  L+EA R+F  M + +++++N MI+G   NG  ++AL+ F  M
Sbjct: 281 PEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDM 340

Query: 400 ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
           +  G+  D +    +L A +      +G  I   + R+C     +   S LVD+  +  +
Sbjct: 341 QKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCA-HVDVFLVSALVDIYFKCRD 399

Query: 460 LEQALNIVES 469
           +  A N+ ++
Sbjct: 400 VRMAQNVFDA 409



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 108/232 (46%), Gaps = 7/232 (3%)

Query: 260 AQQLFNEMPERNV---FSWSIMIDGYAQHGNPKEALYLFREMLCQ--GVRPDVISVMGAI 314
           A  +F+ +P         W+ +I G+   G+ + A+  + +M       RPD  ++   +
Sbjct: 95  AVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVV 154

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
            +CA +GAL LG+ +H   +   +  DM V +ALI MY   G LD AR +F  M +++ +
Sbjct: 155 KSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCV 214

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434
            +NVM+ G    G    A+  F  M   G   +       L  C+       G ++  ++
Sbjct: 215 LWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQL-HTL 273

Query: 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
               G+EP++   + LV + ++   LE+A  +   MP + +L  W  ++  C
Sbjct: 274 AVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMP-RDDLVTWNGMISGC 324


>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 534

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 182/510 (35%), Positives = 292/510 (57%), Gaps = 43/510 (8%)

Query: 110 VDNYTYPFV-----------LKACGVLMGLVEGTEIHGEVVKMGFLCD------------ 146
           V+NY  PF+           + AC ++ GL + + +   V KM  LCD            
Sbjct: 9   VENYFIPFLQRVKSRNEWKKIHACIIVHGLSQSSFM---VTKMVDLCDKLGDMDYATRLF 65

Query: 147 -------VFVVNGLIGMYSK----CGHMGCARSVFEGS-EIKDLVSWNLVLRGFVECGEM 194
                  VF+ N +I  Y+     C  +   + +   + E  D  ++  + +     G  
Sbjct: 66  NQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSC 125

Query: 195 GKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDG 250
              ++V   +    P+   ++ + +ID Y K   D+  A  +F+ M  +D+ISWNS++ G
Sbjct: 126 YLGKQVHGHLYKFGPRFHVVTENALIDMYMKFD-DLVDAHKVFDEMSERDVISWNSLLSG 184

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           YA++G +  A+ LF+ M ++ + SW+ MI GY   G   EA+  FREM   G+ PD IS+
Sbjct: 185 YARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISL 244

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
           +  + +CA +G+L+LGKWIH++ +R  +     V  ALI+MY KCG L +A ++F     
Sbjct: 245 ISVLPSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKG 304

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           K+VIS++ MI+G   +G    A + F +M+   +  + + FLG+L ACSH GL  +G + 
Sbjct: 305 KDVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLKY 364

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
           F  M++   IEPK+EHY CL+D+L+RAG+LE+A+ I ++MP+KP+  +WG+LL +CR   
Sbjct: 365 FDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPVKPDSKIWGSLLSSCRTKG 424

Query: 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           N+ +A V ++ LVE++ DD G YVLL+NIYAD G WE   R+RK++RK  +KK  G S+I
Sbjct: 425 NLDVALVAMDHLVEVEPDDMGNYVLLANIYADLGKWEDVSRLRKIIRKENMKKTPGCSLI 484

Query: 551 EIDGNIKEFVSGEIFDVQSEELELVIQSFV 580
           E++  ++EFV+G+       E+ LV+Q F 
Sbjct: 485 EVNNIVQEFVAGDNSKPFWTEISLVLQLFT 514



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/401 (30%), Positives = 189/401 (47%), Gaps = 42/401 (10%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           ++N  +  LQ  K+     +I A +  + L    F +++  M        +MD A RLFN
Sbjct: 9   VENYFIPFLQRVKSRNEWKKIHACIIVHGLSQSSFMVTK--MVDLCDKLGDMDYATRLFN 66

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGL-LVDNYTYPFVLKACGVLMGLV 129
           Q+  PN +++N++IR YT +S     +  Y  + RK +   D +T+PF+ K+C  L    
Sbjct: 67  QVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCY 126

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
            G ++HG + K G    V   N LI MY K   +  A  VF+    +D++SWN +L G+ 
Sbjct: 127 LGKQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYA 186

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRK-------------------KKGDISSAR 230
             G+M KA+ +F  M  K  +SW+ MI GY                     +  +IS   
Sbjct: 187 RLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLIS 246

Query: 231 IL--FEHMPIKDLISW-----------------NSMIDGYAKIGDLVAAQQLFNEMPERN 271
           +L    H+   +L  W                 N++I+ Y+K G L  A QLF +   ++
Sbjct: 247 VLPSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKD 306

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIH 330
           V SWS MI GYA HGN   A   F EM    V+P+ I+ +G +SAC+ VG    G K+  
Sbjct: 307 VISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLKYFD 366

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
           +  +  +I   +     LID+  + G L+ A  I  +M  K
Sbjct: 367 MMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPVK 407


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 183/556 (32%), Positives = 312/556 (56%), Gaps = 27/556 (4%)

Query: 44  PFTLSQLLMSLT---SPNTLNMDQAER------LFNQIY-QPNTYMHNTMIRGYTQSSNP 93
           P+T+S  L++++     N  +   A        LFN+ + + + Y  N++I    +  + 
Sbjct: 4   PYTISLQLLTISFKIHKNHFSTTAAATNTNLTTLFNKYFDRTDVYSWNSLIAELARGGDS 63

Query: 94  QKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGL 153
            ++L  +  M++  +  +  T+P  +K+C  L  L  G + H + +  GF  D+FV + L
Sbjct: 64  CESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSAL 123

Query: 154 IGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM--------- 204
           I MYSKCG +  AR +F+    +++V+W  ++ G+V+  +  +A  VF E          
Sbjct: 124 IDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNG 183

Query: 205 ----PQKDAISWSIMIDGYRKKKGDISSARILFEHMPI---KDLISWNSMIDGYAKIGDL 257
                  D+++   ++    +      S  +    + +   K +   N+++D YAK G++
Sbjct: 184 EEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEV 243

Query: 258 VAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML-CQGVRPDVISVMGAISA 316
             ++++F++M E++V SW+ MI  YAQ+G   +A  +F  ML   G + + +++   + A
Sbjct: 244 SLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLA 303

Query: 317 CAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISY 376
           CA  GAL +G  +H  + +     ++I+ T++IDMY KCG  + AR  F  M +KNV S+
Sbjct: 304 CAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSW 363

Query: 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436
             MIAG GM+GF  EAL  F QM   G+  + + F+ VL ACSH+G   EG+R F +M  
Sbjct: 364 TAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSH 423

Query: 437 HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAE 496
              +EP +EHY C+VDLL RAG +++A N+++SM ++ +  LWG+LL ACR H++V LAE
Sbjct: 424 EYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAE 483

Query: 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNI 556
           +    L +L   +CG YVLL+NIYADAG W+   R+R +++ R + K  G S++E+ G +
Sbjct: 484 ISARELFKLDPSNCGYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRV 543

Query: 557 KEFVSGEIFDVQSEEL 572
             F+ G+    Q E++
Sbjct: 544 HVFLVGDKEHPQHEKI 559


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 187/583 (32%), Positives = 316/583 (54%), Gaps = 38/583 (6%)

Query: 23  KTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNT 82
           K+ +   Q+ AQ      ++   T + +++S+ + N   + +A  +F  +  P      +
Sbjct: 19  KSKSQAKQLHAQFIRTQSLSH--TSASIVISIYT-NLKLLHEALLVFKTLESPPVLAWKS 75

Query: 83  MIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMG 142
           +IR +T  S   +AL+ +V M+  G   D+  +P VLK+C ++M L  G  +HG +V++G
Sbjct: 76  VIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLG 135

Query: 143 FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFD 202
             CD++  N L+ MYSK   +   R VFE    KD+VS+N V+ G+ + G    A  +  
Sbjct: 136 MDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVR 195

Query: 203 EMP----QKDAISWSIM---------------IDGYRKKKGDISSARILFEHMPIKDLIS 243
           EM     + DA + S +               I GY  +KG  S            D+  
Sbjct: 196 EMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDS------------DVYI 243

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
            +S++D YAK   +  ++++F+ +  R+  SW+ ++ GY Q+G   EAL LFR+M+   V
Sbjct: 244 GSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKV 303

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
           RP  ++    I ACA +  L LGK +H ++ R     ++ + +AL+DMY KCG++  AR+
Sbjct: 304 RPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARK 363

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           IF  M   + +S+  +I G  ++G G EA+  F +M+ +G+  + + F+ VL ACSH GL
Sbjct: 364 IFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGL 423

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             E +  F SM +  G+  +LEHY+ + DLL RAG+LE+A + +  M ++P  ++W TLL
Sbjct: 424 VDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLL 483

Query: 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
            +C  H+N+ LAE V E +  + +++ G YVL+ N+YA  G W+   ++R  +RK+ ++K
Sbjct: 484 SSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRK 543

Query: 544 ETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586
           +   S IE+      FVSG+    +S      I  F+K  +E+
Sbjct: 544 KPACSWIEMKNKTHGFVSGD----RSHPSMDRINEFLKAVMEQ 582


>gi|297728297|ref|NP_001176512.1| Os11g0433100 [Oryza sativa Japonica Group]
 gi|62701919|gb|AAX92992.1| hypothetical protein LOC_Os11g24530 [Oryza sativa Japonica Group]
 gi|77550326|gb|ABA93123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125534237|gb|EAY80785.1| hypothetical protein OsI_35965 [Oryza sativa Indica Group]
 gi|125577016|gb|EAZ18238.1| hypothetical protein OsJ_33779 [Oryza sativa Japonica Group]
 gi|255680048|dbj|BAH95240.1| Os11g0433100 [Oryza sativa Japonica Group]
          Length = 622

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 177/517 (34%), Positives = 287/517 (55%), Gaps = 41/517 (7%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D+AE LF  + + N    NTM+  YT     + A + +  M  +    D  ++  +L  
Sbjct: 120 VDEAEALFEGMAERNVVSWNTMLEAYTAVGRVEDASALFNRMPVR----DAGSWNILL-- 173

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           CG++                                 + G +  AR +FE   ++D++SW
Sbjct: 174 CGLV---------------------------------RSGSLERARKMFERMPVRDVMSW 200

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
             ++ G    G +  A  +FD MP+++ +SW+ MI GY +    I  A  LF  MPI+D+
Sbjct: 201 TTMISGLARNGSVDDAWVLFDAMPERNVVSWNAMISGYARNH-RIEEALDLFTKMPIRDV 259

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
            SWN MI G+ +  DL +A+QLF+EMP+RNV +W+ M++GY Q    + AL LF  ML Q
Sbjct: 260 ASWNIMITGFIQNKDLKSARQLFDEMPKRNVITWTTMMNGYLQCMQSEMALKLFNCMLVQ 319

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
           G++P+ ++ +G++ AC+ + AL  G+ +H  + ++    D  V++ L+++Y KCG +  A
Sbjct: 320 GIQPNQVTFLGSLDACSNLAALCEGQQVHQMICKTPSQFDTFVESTLMNLYAKCGEIRLA 379

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
           R +F    +K++IS+N +IA    +GFG EA+  +  M+  G   +D  ++G+L ACSH+
Sbjct: 380 RNVFDFSMEKDLISWNGIIAAYAHHGFGIEAMHLYKNMQENGYKPNDATYVGLLSACSHA 439

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA-LWG 480
           GL  EG +IF+SM +   I  + EHY+CLVDL SRAG LE A  ++    +KP  + +W 
Sbjct: 440 GLVDEGLKIFESMVKDNSIVVRDEHYTCLVDLCSRAGRLEDAKRLISWFKIKPTSSTVWS 499

Query: 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540
            LL  C +H N ++ ++  + L+E + D+ G Y LL NIYA AG W+ A  IR  M  R 
Sbjct: 500 ALLGGCNSHGNESIGDLAAKHLLEAEPDNAGTYTLLCNIYASAGKWKEAAEIRSEMNVRG 559

Query: 541 IKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           +KK+ G S IE+   +  FVS +    +S+ +  ++Q
Sbjct: 560 LKKQPGCSWIEVANKVHVFVSRDKSHSESDLINDLLQ 596



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 202/398 (50%), Gaps = 19/398 (4%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIK-DLVSWNLVLRGFVECGEMGKAREVFDEM 204
           DV     ++  Y++ G +  AR +F+  + + ++V+W  +L G+     + +A  +F+ M
Sbjct: 71  DVVSWTAMVAAYARRGMLQEARVLFDRPDARRNVVTWTALLSGYARARRVDEAEALFEGM 130

Query: 205 PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
            +++ +SW+ M++ Y    G +  A  LF  MP++D  SWN ++ G  + G L  A+++F
Sbjct: 131 AERNVVSWNTMLEAY-TAVGRVEDASALFNRMPVRDAGSWNILLCGLVRSGSLERARKMF 189

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
             MP R+V SW+ MI G A++G+  +A  LF  M       +V+S    IS  A+   ++
Sbjct: 190 ERMPVRDVMSWTTMISGLARNGSVDDAWVLFDAM----PERNVVSWNAMISGYARNHRIE 245

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
               + +F K      D+     +I  +++   L  AR++F  M K+NVI++  M+ G  
Sbjct: 246 EA--LDLFTKMP--IRDVASWNIMITGFIQNKDLKSARQLFDEMPKRNVITWTTMMNGYL 301

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444
                E ALK F  M  +GI  + + FLG L ACS+     EG ++ Q +   C    + 
Sbjct: 302 QCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMI---CKTPSQF 358

Query: 445 EHY--SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
           + +  S L++L ++ GE+  A N+ +   M+ +L  W  ++ A  +H     A  + + +
Sbjct: 359 DTFVESTLMNLYAKCGEIRLARNVFD-FSMEKDLISWNGIIAAYAHHGFGIEAMHLYKNM 417

Query: 503 VE--LKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
            E   K +D   YV L +  + AG+ +  L+I + M K
Sbjct: 418 QENGYKPND-ATYVGLLSACSHAGLVDEGLKIFESMVK 454



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 143/324 (44%), Gaps = 61/324 (18%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  A +LF+++ + N     TM+ GY Q    + AL  +  M  +G+  +  T+   L 
Sbjct: 274 DLKSARQLFDEMPKRNVITWTTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLD 333

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L EG ++H  + K     D FV + L+ +Y+KCG +  AR+VF+ S  KDL+S
Sbjct: 334 ACSNLAALCEGQQVHQMICKTPSQFDTFVESTLMNLYAKCGEIRLARNVFDFSMEKDLIS 393

Query: 181 WNLVLRGFVE--------------------------------CGEMGKARE---VFDEMP 205
           WN ++  +                                  C   G   E   +F+ M 
Sbjct: 394 WNGIIAAYAHHGFGIEAMHLYKNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMV 453

Query: 206 QKDAI-----SWSIMIDGYRKKKGDISSARILFEHMPIKDLIS--WNSMI-----DGYAK 253
           + ++I      ++ ++D    + G +  A+ L     IK   S  W++++      G   
Sbjct: 454 KDNSIVVRDEHYTCLVD-LCSRAGRLEDAKRLISWFKIKPTSSTVWSALLGGCNSHGNES 512

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313
           IGDL AA+ L    P+ N  +++++ + YA  G  KEA  +  EM  +G++         
Sbjct: 513 IGDL-AAKHLLEAEPD-NAGTYTLLCNIYASAGKWKEAAEIRSEMNVRGLKKQ------- 563

Query: 314 ISACAQVGALDLGKWIHVFMKRSR 337
              C+ +   ++   +HVF+ R +
Sbjct: 564 -PGCSWI---EVANKVHVFVSRDK 583



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 155/342 (45%), Gaps = 49/342 (14%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D A  LF+ + + N    N MI GY ++   ++AL  +  M  +              
Sbjct: 212 SVDDAWVLFDAMPERNVVSWNAMISGYARNHRIEEALDLFTKMPIR-------------- 257

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
                                    DV   N +I  + +   +  AR +F+    +++++
Sbjct: 258 -------------------------DVASWNIMITGFIQNKDLKSARQLFDEMPKRNVIT 292

Query: 181 WNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARI--LFE 234
           W  ++ G+++C +   A ++F+ M     Q + +++   +D            ++  +  
Sbjct: 293 WTTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMIC 352

Query: 235 HMPIK-DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
             P + D    +++++ YAK G++  A+ +F+   E+++ SW+ +I  YA HG   EA++
Sbjct: 353 KTPSQFDTFVESTLMNLYAKCGEIRLARNVFDFSMEKDLISWNGIIAAYAHHGFGIEAMH 412

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMY 352
           L++ M   G +P+  + +G +SAC+  G +D G K     +K + I +     T L+D+ 
Sbjct: 413 LYKNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMVKDNSIVVRDEHYTCLVDLC 472

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGL-GMNGFGEEAL 393
            + G L++A+R+  S  K    S  V  A L G N  G E++
Sbjct: 473 SRAGRLEDAKRLI-SWFKIKPTSSTVWSALLGGCNSHGNESI 513



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 115/232 (49%), Gaps = 17/232 (7%)

Query: 252 AKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
           A  G +  A++LF+ MP+R+V SW+ M+  YA+ G  +EA  LF        R +V++  
Sbjct: 52  AAAGRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDR---PDARRNVVTWT 108

Query: 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
             +S  A+   +D  + +   M    +    +    +++ Y   G +++A  +F  M  +
Sbjct: 109 ALLSGYARARRVDEAEALFEGMAERNV----VSWNTMLEAYTAVGRVEDASALFNRMPVR 164

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           +  S+N+++ GL  +G  E A K F +M      +D + +  ++   + +G   + + +F
Sbjct: 165 DAGSWNILLCGLVRSGSLERARKMFERMPV----RDVMSWTTMISGLARNGSVDDAWVLF 220

Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
            +M      E  +  ++ ++   +R   +E+AL++   MP++ ++A W  ++
Sbjct: 221 DAMP-----ERNVVSWNAMISGYARNHRIEEALDLFTKMPIR-DVASWNIMI 266


>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Glycine max]
          Length = 628

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 186/575 (32%), Positives = 313/575 (54%), Gaps = 20/575 (3%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN--QIYQPNTYMHNTMIRGY 87
           ++   L  N     P  ++ L+ ++ S  +L +D + R+FN    +  N + +N +I G+
Sbjct: 50  ELHTHLLKNAFFGSPLAITSLI-NMYSKCSL-IDHSLRVFNFPTHHNKNVFAYNALIAGF 107

Query: 88  TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV 147
             ++ PQ+AL+ Y  M+  G+  D +T+P V++ACG        T+IHG + K+G   DV
Sbjct: 108 LANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFVVTKIHGLMFKVGLELDV 167

Query: 148 FVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK 207
           FV + L+  Y K   +G A  VFE   ++D+V WN ++ GF + G   +A  VF  M   
Sbjct: 168 FVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIGRFEEALGVFRRMGGN 227

Query: 208 DAISWSIMIDGYRK---KKGDISSARILFEHMPI----KDLISWNSMIDGYAKIGDLVAA 260
             +     + G        GD  + R +   +        ++  N++ID Y K   +  A
Sbjct: 228 GVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVSNALIDMYGKCKCVGDA 287

Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQ 319
             +F  M E ++FSW+ ++  + + G+    L LF  M+    V+PD+++V   + AC  
Sbjct: 288 LSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPACTH 347

Query: 320 VGALDLGKWIHVFM--------KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
           + AL  G+ IH +M        +   +  D+++  AL+DMY KCG++ +AR +F +M +K
Sbjct: 348 LAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMDMYAKCGNMRDARMVFVNMREK 407

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           +V S+N+MI G GM+G+G EAL  F++M    +  +++ F+G+L ACSH+G+  EG    
Sbjct: 408 DVASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEISFVGLLSACSHAGMVKEGLGFL 467

Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN 491
             M+   G+ P +EHY+C++D+L RAG+L +A ++V +MP K +   W +LL ACR H +
Sbjct: 468 SEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAYDLVLTMPFKADPVGWRSLLAACRLHND 527

Query: 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
             LAEV    ++EL+ D CG YVL+SN+Y   G +E  L  R  M+++ +KK  G S IE
Sbjct: 528 TDLAEVAASKVIELEPDHCGNYVLMSNVYGVVGRYEEVLEWRYTMKQQNVKKRPGCSWIE 587

Query: 552 IDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586
           +   +  F++G+    Q+E +   + S      E 
Sbjct: 588 LVNGVHVFITGDRTHPQTEYIYAGLNSLTAVLQEH 622



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/415 (23%), Positives = 178/415 (42%), Gaps = 84/415 (20%)

Query: 119 LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE--GSEIK 176
           L++C     L +G E+H  ++K  F      +  LI MYSKC  +  +  VF       K
Sbjct: 36  LQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVFNFPTHHNK 95

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEM------PQK----------------------- 207
           ++ ++N ++ GF+      +A  ++++M      P K                       
Sbjct: 96  NVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFVVTKIH 155

Query: 208 ----------DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDL 257
                     D    S +++ Y K +  +  A  +FE +P++D++ WN+M++G+A+IG  
Sbjct: 156 GLMFKVGLELDVFVGSALVNTYLKFRF-VGEAYRVFEELPVRDVVLWNAMVNGFAQIGRF 214

Query: 258 VAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISAC 317
                                          +EAL +FR M   GV P   +V G +S  
Sbjct: 215 -------------------------------EEALGVFRRMGGNGVVPCRYTVTGVLSIF 243

Query: 318 AQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYN 377
           + +G  D G+ +H F+ +      ++V  ALIDMY KC  + +A  +F  M + ++ S+N
Sbjct: 244 SVMGDFDNGRAVHGFVTKMGYESGVVVSNALIDMYGKCKCVGDALSVFEMMDEIDIFSWN 303

Query: 378 VMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL-GVLIACSH-----SGLATEGYRIF 431
            +++     G     L+ F +M      + DL+ +  VL AC+H      G    GY + 
Sbjct: 304 SIMSVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPACTHLAALMHGREIHGYMVV 363

Query: 432 QSMKR---HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             + +   H   +  L + + L+D+ ++ G +  A  +  +M  K ++A W  ++
Sbjct: 364 NGLAKEESHDVFDDVLLN-NALMDMYAKCGNMRDARMVFVNMREK-DVASWNIMI 416



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 91/189 (48%), Gaps = 9/189 (4%)

Query: 300 CQGVRP-DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
           C+G    D+ + +  + +CA    L  GK +H  + ++      +  T+LI+MY KC  +
Sbjct: 21  CRGFSTYDLGTCIATLQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLI 80

Query: 359 DEARRIFYSMT--KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
           D + R+F   T   KNV +YN +IAG   N   + AL  + QM   GI  D   F  V+ 
Sbjct: 81  DHSLRVFNFPTHHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIR 140

Query: 417 ACSHSGLATEGYRI--FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           AC   G   +G+ +     +    G+E  +   S LV+   +   + +A  + E +P++ 
Sbjct: 141 AC---GDDDDGFVVTKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVR- 196

Query: 475 NLALWGTLL 483
           ++ LW  ++
Sbjct: 197 DVVLWNAMV 205


>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]
          Length = 475

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 158/363 (43%), Positives = 234/363 (64%), Gaps = 1/363 (0%)

Query: 216 IDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
           I G   K+G +  AR++F++M  K+ ++WN+MIDGY + G +  A +LF++MPE ++ SW
Sbjct: 90  ILGMYSKRGRVKKARLVFDYMDDKNSVTWNTMIDGYMRSGQVHNAVKLFDKMPEPDLISW 149

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
           + M++G+ + G  +EAL  FREM   GV+PD ++++ A++AC  +GAL LG W+H ++  
Sbjct: 150 TAMVNGFVKKGFHEEALVWFREMQISGVKPDYVAIIAALNACTNLGALSLGLWVHRYVMS 209

Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
                ++ V  +LID+Y +CG ++ AR +F  M K+ V+S+N +I G   NG   E+L  
Sbjct: 210 QDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVY 269

Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           F +M+ EG   + + F G L ACSH GL  EG R FQSMKR   I P++EHY CLVDL S
Sbjct: 270 FRKMQEEGFKPNAVTFTGALTACSHVGLVDEGLRFFQSMKRDYNISPRIEHYGCLVDLYS 329

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT-LAEVVVEGLVELKADDCGLYV 514
           RAG LE AL +V+SMPMKPN  + G+LL ACRNH N T LAE +++ L +L       YV
Sbjct: 330 RAGRLEDALKVVQSMPMKPNEVVIGSLLAACRNHGNNTVLAERLMKHLSDLNVKSHSNYV 389

Query: 515 LLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELEL 574
           +LSN+YA    WE A R+R+ M+   +KK+ G S IEID     F++G+   V++  +  
Sbjct: 390 ILSNMYAADAKWEGASRMRRKMKGLGLKKQPGFSSIEIDDCTHVFMAGDSAHVETAYIRE 449

Query: 575 VIQ 577
           V++
Sbjct: 450 VLE 452



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 169/327 (51%), Gaps = 44/327 (13%)

Query: 88  TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE--GTEIHGEVVKMGFLC 145
           T+S+   +A   + +M+  G+   + T+  +L  CG      E  G  +HG   K+G   
Sbjct: 22  TRSAXLAEAAKEFADMRLAGVEPTHITFIALLSGCGDFPSGSETLGDLLHGYACKLGLDR 81

Query: 146 D-VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM 204
           + V V   ++GMYSK G +  AR VF+  + K+ V+WN ++ G++  G++  A ++FD+M
Sbjct: 82  NHVMVGTAILGMYSKRGRVKKARLVFDYMDDKNSVTWNTMIDGYMRSGQVHNAVKLFDKM 141

Query: 205 PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK----DLIS----------------- 243
           P+ D ISW+ M++G+  KKG    A + F  M I     D ++                 
Sbjct: 142 PEPDLISWTAMVNGF-VKKGFHEEALVWFREMQISGVKPDYVAIIAALNACTNLGALSLG 200

Query: 244 -W-----------------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
            W                 NS+ID Y + G +  A+++F++M +R V SW+ +I G+A +
Sbjct: 201 LWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAAN 260

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS-RITMDMIV 344
           GN  E+L  FR+M  +G +P+ ++  GA++AC+ VG +D G      MKR   I+  +  
Sbjct: 261 GNAHESLVYFRKMQEEGFKPNAVTFTGALTACSHVGLVDEGLRFFQSMKRDYNISPRIEH 320

Query: 345 QTALIDMYMKCGSLDEARRIFYSMTKK 371
              L+D+Y + G L++A ++  SM  K
Sbjct: 321 YGCLVDLYSRAGRLEDALKVVQSMPMK 347



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 109/263 (41%), Gaps = 46/263 (17%)

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV- 320
           Q  N+     + SW+  I    +     EA   F +M   GV P  I+ +  +S C    
Sbjct: 1   QKHNQSTSETIVSWTSRITLLTRSAXLAEAAKEFADMRLAGVEPTHITFIALLSGCGDFP 60

Query: 321 -GALDLGKWIHVF--------------------------MKRSRITMDM------IVQTA 347
            G+  LG  +H +                          +K++R+  D       +    
Sbjct: 61  SGSETLGDLLHGYACKLGLDRNHVMVGTAILGMYSKRGRVKKARLVFDYMDDKNSVTWNT 120

Query: 348 LIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407
           +ID YM+ G +  A ++F  M + ++IS+  M+ G    GF EEAL  F +M+  G+  D
Sbjct: 121 MIDGYMRSGQVHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALVWFREMQISGVKPD 180

Query: 408 DLIFLGVLIACSHSGLATEG-----YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
            +  +  L AC++ G  + G     Y + Q  K +  +       + L+DL  R G +E 
Sbjct: 181 YVAIIAALNACTNLGALSLGLWVHRYVMSQDFKNNVRVS------NSLIDLYCRCGCVEF 234

Query: 463 ALNIVESMPMKPNLALWGTLLLA 485
           A  + + M  K  +  W ++++ 
Sbjct: 235 AREVFDKME-KRTVVSWNSVIVG 256



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 118/260 (45%), Gaps = 30/260 (11%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            A +LF+++ +P+      M+ G+ +    ++AL ++  M+  G+  D       L AC 
Sbjct: 133 NAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALVWFREMQISGVKPDYVAIIAALNACT 192

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            L  L  G  +H  V+   F  +V V N LI +Y +CG +  AR VF+  E + +VSWN 
Sbjct: 193 NLGALSLGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNS 252

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKD--L 241
           V+ GF   G   ++   F +M +          +G++      + A     H+ + D  L
Sbjct: 253 VIVGFAANGNAHESLVYFRKMQE----------EGFKPNAVTFTGALTACSHVGLVDEGL 302

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
             + SM             ++ +N  P   +  +  ++D Y++ G  ++AL + + M   
Sbjct: 303 RFFQSM-------------KRDYNISPR--IEHYGCLVDLYSRAGRLEDALKVVQSM--- 344

Query: 302 GVRPDVISVMGAISACAQVG 321
            ++P+ + +   ++AC   G
Sbjct: 345 PMKPNEVVIGSLLAACRNHG 364


>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Glycine max]
          Length = 581

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 172/512 (33%), Positives = 289/512 (56%), Gaps = 43/512 (8%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           +AERLF ++   N    NTM+ GY ++   Q+AL  +  M  +                 
Sbjct: 82  EAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPER----------------- 124

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
                                 +V   N +I    +CG +  A+ +F+  + +D+VSW  
Sbjct: 125 ----------------------NVVSWNTIITALVQCGRIEDAQRLFDQMKDRDVVSWTT 162

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243
           ++ G  + G +  AR +FD+MP ++ +SW+ MI GY + +  +  A  LF+ MP +D+ S
Sbjct: 163 MVAGLAKNGRVEDARALFDQMPVRNVVSWNAMITGYAQNR-RLDEALQLFQRMPERDMPS 221

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG- 302
           WN+MI G+ + G+L  A++LF EM E+NV +W+ M+ GY QHG  +EAL +F +ML    
Sbjct: 222 WNTMITGFIQNGELNRAEKLFGEMQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNE 281

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           ++P+  + +  + AC+ +  L  G+ IH  + ++       V +ALI+MY KCG L  AR
Sbjct: 282 LKPNTGTFVTVLGACSDLAGLTEGQQIHQMISKTVFQDSTCVVSALINMYSKCGELHTAR 341

Query: 363 RIFYS--MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           ++F    ++++++IS+N MIA    +G+G+EA+  F +M+  G+  +D+ F+G+L ACSH
Sbjct: 342 KMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLFNEMQELGVCANDVTFVGLLTACSH 401

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
           +GL  EG++ F  + ++  I+ + +HY+CLVDL  RAG L++A NI+E +  +  L +WG
Sbjct: 402 TGLVEEGFKYFDEILKNRSIQLREDHYACLVDLCGRAGRLKEASNIIEGLGEEVPLTVWG 461

Query: 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540
            LL  C  H N  + ++V E +++++  + G Y LLSN+YA  G W+ A  +R  M+   
Sbjct: 462 ALLAGCNVHGNADIGKLVAEKILKIEPQNAGTYSLLSNMYASVGKWKEAANVRMRMKDMG 521

Query: 541 IKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           +KK+ G S IE+   ++ FV G+    Q E L
Sbjct: 522 LKKQPGCSWIEVGNTVQVFVVGDKPHSQYEPL 553



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 107/369 (28%), Positives = 185/369 (50%), Gaps = 36/369 (9%)

Query: 151 NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM-PQKDA 209
           N  I    + G +  AR VFE    +D+  W  ++ G+++CG + +AR++FD    +K+ 
Sbjct: 5   NLFISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDAKKNV 64

Query: 210 ISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269
           ++W+ M++GY  K   +  A  LF  MP+++++SWN+M+DGYA+ G    A  LF  MPE
Sbjct: 65  VTWTAMVNGY-IKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPE 123

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK-- 327
           RNV SW+ +I    Q G  ++A  LF +M  +    DV+S    ++  A+ G ++  +  
Sbjct: 124 RNVVSWNTIITALVQCGRIEDAQRLFDQMKDR----DVVSWTTMVAGLAKNGRVEDARAL 179

Query: 328 -----------W---IHVFMKRSRIT-----------MDMIVQTALIDMYMKCGSLDEAR 362
                      W   I  + +  R+             DM     +I  +++ G L+ A 
Sbjct: 180 FDQMPVRNVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAE 239

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM-ETEGIPKDDLIFLGVLIACSHS 421
           ++F  M +KNVI++  M+ G   +G  EEAL+ F +M  T  +  +   F+ VL ACS  
Sbjct: 240 KLFGEMQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDL 299

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES-MPMKPNLALWG 480
              TEG +I Q + +    +      S L+++ S+ GEL  A  + +  +  + +L  W 
Sbjct: 300 AGLTEGQQIHQMISKTV-FQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWN 358

Query: 481 TLLLACRNH 489
            ++ A  +H
Sbjct: 359 GMIAAYAHH 367



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 103/449 (22%), Positives = 188/449 (41%), Gaps = 121/449 (26%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ A+RLF+Q+   +     TM+ G  ++   + A + +  M  +               
Sbjct: 142 IEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVR--------------- 186

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
                                   +V   N +I  Y++   +  A  +F+    +D+ SW
Sbjct: 187 ------------------------NVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPSW 222

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK------------------ 223
           N ++ GF++ GE+ +A ++F EM +K+ I+W+ M+ GY +                    
Sbjct: 223 NTMITGFIQNGELNRAEKLFGEMQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNEL 282

Query: 224 -----------GDISSARILFEHMPIKDLISW----------NSMIDGYAKIGDLVAAQQ 262
                      G  S    L E   I  +IS           +++I+ Y+K G+L  A++
Sbjct: 283 KPNTGTFVTVLGACSDLAGLTEGQQIHQMISKTVFQDSTCVVSALINMYSKCGELHTARK 342

Query: 263 LFNE--MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
           +F++  + +R++ SW+ MI  YA HG  KEA+ LF EM   GV  + ++ +G ++AC+  
Sbjct: 343 MFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLFNEMQELGVCANDVTFVGLLTACSHT 402

Query: 321 GALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVM 379
           G ++ G K+    +K   I +       L+D+  + G L EA  I               
Sbjct: 403 GLVEEGFKYFDEILKNRSIQLREDHYACLVDLCGRAGRLKEASNI--------------- 447

Query: 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA-CSHSGLATEGYRIFQSMKRHC 438
                + G GEE            +P   L   G L+A C+  G A  G  + + + +  
Sbjct: 448 -----IEGLGEE------------VP---LTVWGALLAGCNVHGNADIGKLVAEKILK-- 485

Query: 439 GIEPK-LEHYSCLVDLLSRAGELEQALNI 466
            IEP+    YS L ++ +  G+ ++A N+
Sbjct: 486 -IEPQNAGTYSLLSNMYASVGKWKEAANV 513


>gi|414884999|tpg|DAA61013.1| TPA: hypothetical protein ZEAMMB73_343744 [Zea mays]
          Length = 557

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 154/408 (37%), Positives = 260/408 (63%), Gaps = 4/408 (0%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D    N L+  + + G +  AR +F+    +DLV++N +L G+   G++  ARE+FD MP
Sbjct: 151 DTVTWNTLLRSFLRMGLLPAARRLFDEMPERDLVTYNSMLSGYAAEGDIANARELFDGMP 210

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
           ++D ++W+ M+ GY  ++GD+ SA+ LF+ MP++D++SWNSM+DGYA+ GD+   + +F+
Sbjct: 211 ERDVVTWNSMLAGY-AQRGDMESAKRLFDVMPVRDVVSWNSMLDGYAQTGDIEMTRMVFD 269

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC-QGVRPDVISVMGAISACAQVGALD 324
            MP R+  SW++++  YA+  +  E L LF  M+   G +P+  + +  ++AC  +G L+
Sbjct: 270 GMPRRSTVSWNVVLALYAKVKDWHECLNLFDAMMAVGGSKPNEKTFVSVLTACGHLGDLE 329

Query: 325 LGKWIHVFMKRS--RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
            G+W+H  +  S  R+  D+++ TA++ MY KCG +  A+ IF  MT+++V S+N MI G
Sbjct: 330 RGRWVHHLVHESWERLLPDVLLLTAMMTMYAKCGVMGTAKEIFDLMTERSVASWNSMIIG 389

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
            G++G+ E+AL+ F +ME  G   ++  F+ +L +C+H GL  EG+  F  M R   IEP
Sbjct: 390 YGLHGYSEKALELFMEMEKNGPQPNETTFICILSSCAHGGLVLEGWWCFDRMVRFYNIEP 449

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
           K EH+ C++DLL RAG L  + N++ ++  K + ALWG L+ A R   +  L E +   L
Sbjct: 450 KAEHFGCMMDLLGRAGLLRDSENLINNLQAKVSPALWGALISASRTQDSSKLGEFIGTKL 509

Query: 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           +E+K  +   YVLLSNIYA  G W+   ++RK+M+++ ++K+ G S++
Sbjct: 510 IEMKPTEFSSYVLLSNIYATEGRWDDVEKVRKVMKEKVVEKDVGMSLV 557



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 157/372 (42%), Gaps = 90/372 (24%)

Query: 7   AKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQA 65
           +   L N L+SL     +T    ++LA +   D +T    L   L M L       +  A
Sbjct: 119 SDLRLANSLLSLYLSHGSTASARRLLADIPRPDTVTWNTLLRSFLRMGL-------LPAA 171

Query: 66  ERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVL 125
            RLF+++ + +   +N+M+ GY    +   A   +  M  +                   
Sbjct: 172 RRLFDEMPERDLVTYNSMLSGYAAEGDIANARELFDGMPER------------------- 212

Query: 126 MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL 185
                               DV   N ++  Y++ G M  A+ +F+   ++D+VSWN +L
Sbjct: 213 --------------------DVVTWNSMLAGYAQRGDMESAKRLFDVMPVRDVVSWNSML 252

Query: 186 RGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK---------------------- 223
            G+ + G++   R VFD MP++  +SW++++  Y K K                      
Sbjct: 253 DGYAQTGDIEMTRMVFDGMPRRSTVSWNVVLALYAKVKDWHECLNLFDAMMAVGGSKPNE 312

Query: 224 -------------GDISSARIL-------FEHMPIKDLISWNSMIDGYAKIGDLVAAQQL 263
                        GD+   R +       +E + + D++   +M+  YAK G +  A+++
Sbjct: 313 KTFVSVLTACGHLGDLERGRWVHHLVHESWERL-LPDVLLLTAMMTMYAKCGVMGTAKEI 371

Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL 323
           F+ M ER+V SW+ MI GY  HG  ++AL LF EM   G +P+  + +  +S+CA  G +
Sbjct: 372 FDLMTERSVASWNSMIIGYGLHGYSEKALELFMEMEKNGPQPNETTFICILSSCAHGGLV 431

Query: 324 DLGKWIHVFMKR 335
             G W    M R
Sbjct: 432 LEGWWCFDRMVR 443



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 138/267 (51%), Gaps = 17/267 (6%)

Query: 224 GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
           G  +SAR L   +P  D ++WN+++  + ++G L AA++LF+EMPER++ +++ M+ GYA
Sbjct: 135 GSTASARRLLADIPRPDTVTWNTLLRSFLRMGLLPAARRLFDEMPERDLVTYNSMLSGYA 194

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
             G+   A  LF  M  +    DV++    ++  AQ G ++  K +   M       D++
Sbjct: 195 AEGDIANARELFDGMPER----DVVTWNSMLAGYAQRGDMESAKRLFDVMP----VRDVV 246

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF-AQMETE 402
              +++D Y + G ++  R +F  M +++ +S+NV++A         E L  F A M   
Sbjct: 247 SWNSMLDGYAQTGDIEMTRMVFDGMPRRSTVSWNVVLALYAKVKDWHECLNLFDAMMAVG 306

Query: 403 GIPKDDLIFLGVLIACSHSGLATEG----YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458
           G   ++  F+ VL AC H G    G    + + +S +R   + P +   + ++ + ++ G
Sbjct: 307 GSKPNEKTFVSVLTACGHLGDLERGRWVHHLVHESWER---LLPDVLLLTAMMTMYAKCG 363

Query: 459 ELEQALNIVESMPMKPNLALWGTLLLA 485
            +  A  I + M  + ++A W ++++ 
Sbjct: 364 VMGTAKEIFDLMTER-SVASWNSMIIG 389



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 46/231 (19%), Positives = 102/231 (44%), Gaps = 26/231 (11%)

Query: 341 DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME 400
           D+ +  +L+ +Y+  GS   ARR+   + + + +++N ++      G    A + F +M 
Sbjct: 120 DLRLANSLLSLYLSHGSTASARRLLADIPRPDTVTWNTLLRSFLRMGLLPAARRLFDEM- 178

Query: 401 TEGIPKDDLIFLGVLIACSHSGLATEG-----YRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
               P+ DL+    ++    SG A EG       +F  M      E  +  ++ ++   +
Sbjct: 179 ----PERDLVTYNSML----SGYAAEGDIANARELFDGMP-----ERDVVTWNSMLAGYA 225

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515
           + G++E A  + + MP++ ++  W ++L       ++ +  +V +G+   +       V+
Sbjct: 226 QRGDMESAKRLFDVMPVR-DVVSWNSMLDGYAQTGDIEMTRMVFDGMP--RRSTVSWNVV 282

Query: 516 LSNIYADAGMWEHALRIRKMMRK---RKIKKETGRSVIEIDGNIKEFVSGE 563
           L+ +YA    W   L +   M      K  ++T  SV+   G++ +   G 
Sbjct: 283 LA-LYAKVKDWHECLNLFDAMMAVGGSKPNEKTFVSVLTACGHLGDLERGR 332


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 184/579 (31%), Positives = 308/579 (53%), Gaps = 42/579 (7%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           L+N L+ L   S   +    +  +++  D+    F+ + +L + +     N++    +F+
Sbjct: 60  LQNRLLHLYAKSGNLSDARDLFDKMSRRDV----FSWNAMLSAYSKSG--NVEDLRAVFD 113

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
           Q+   +   +NT+I G++ +    +AL F+V M+ +G    +YT+  VL AC  L+ +  
Sbjct: 114 QMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKR 173

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G +IHG +V       VFV N L  MY+K                               
Sbjct: 174 GKQIHGRIVATSLGESVFVWNALTNMYAK------------------------------- 202

Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMP----IKDLISWNS 246
           CG + +AR +FD M  K+ +SW+ MI GY +  G   +   LF  M     + D ++ ++
Sbjct: 203 CGALDQARWLFDRMVNKNVVSWNSMISGYLQN-GQPETCTKLFCEMQSSGLMPDQVTISN 261

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           ++  Y + G +  A + F E+ E++   W+ M+ G AQ+G  ++AL LFREML + VRPD
Sbjct: 262 ILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPD 321

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
             ++   +S+CA++ +L  G+ +H       +  D++V +AL+DMY KCG   +A  +F 
Sbjct: 322 NFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFK 381

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            M  +NVIS+N MI G   NG   EAL  + +M  E +  D++ F+GVL AC H+GL   
Sbjct: 382 RMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVER 441

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G   F S+ +  G+ P  +HYSC+++LL RAG +++A+++++SM  +PN  +W TLL  C
Sbjct: 442 GQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVC 501

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           R + +V   E+    L EL   + G Y++LSNIYA  G W+    +R +M+  KIKK   
Sbjct: 502 RINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFAA 561

Query: 547 RSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
            S IEID  + +FV+ +    ++E++   +   +K   E
Sbjct: 562 YSWIEIDNQVHKFVAEDRTHSETEQIYEELNRLIKKLQE 600



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 185/420 (44%), Gaps = 93/420 (22%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D F+ N L+ +Y+K G++  AR +F+    +D+ SWN +L  + + G +   R VFD+M 
Sbjct: 57  DTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMS 116

Query: 206 QKDAISWSIMIDGYRKKKGDISSARIL---------------FEHMPI------------ 238
             DA+S++ +I G+    G+  S++ L               + H+ +            
Sbjct: 117 VHDAVSYNTVIAGF---SGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKR 173

Query: 239 --------------KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQ 284
                         + +  WN++ + YAK G L  A+ LF+ M  +NV SW+ MI GY Q
Sbjct: 174 GKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQ 233

Query: 285 HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIV 344
           +G P+    LF EM   G+ PD +++   +SA                            
Sbjct: 234 NGQPETCTKLFCEMQSSGLMPDQVTISNILSA---------------------------- 265

Query: 345 QTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGI 404
                  Y +CG +DEA + F  + +K+ + +  M+ G   NG  E+AL  F +M  E +
Sbjct: 266 -------YFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENV 318

Query: 405 PKDDLIFLGVLIACSH-----SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
             D+     V+ +C+       G A  G  +        G++  L   S LVD+ S+ GE
Sbjct: 319 RPDNFTISSVVSSCARLASLCQGQAVHGKAVI------FGVDHDLLVSSALVDMYSKCGE 372

Query: 460 LEQALNIVESMPMKPNLALWGTLLLA-CRNHQNVTLAEVVVEGLVE-LKADDCGLYVLLS 517
              A  + + M +  N+  W +++L   +N +++    +  E L E LK D+     +LS
Sbjct: 373 TADAWIVFKRM-LTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLS 431


>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 165/464 (35%), Positives = 265/464 (57%), Gaps = 33/464 (7%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           +V   N ++  Y+  G MG A ++F+G  ++D  SWN++L   V  G M +AR +F+ MP
Sbjct: 132 NVVSWNTMLEAYASAGRMGAACALFDGMPVRDAGSWNILLAALVRSGTMDEARRLFERMP 191

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKI----------- 254
           +++ +SW+ MI G   + G    AR LF+ MP ++++SWN+MI GYA+            
Sbjct: 192 ERNVMSWTTMISGL-ARSGSADEARALFDGMPERNVVSWNAMISGYARNLRIDEALDLFM 250

Query: 255 --------------------GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
                                DL  AQ+LF+EMP+RNV SW+ M++G  Q    + AL +
Sbjct: 251 NMPERDVASWNIMITGFIQNKDLKKAQELFDEMPKRNVVSWTTMMNGCLQGNESEMALQV 310

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           F  ML  G+RP+ ++ +GA+ A + +  L  G+ +H  + ++    D  ++++L+ +Y K
Sbjct: 311 FNGMLVDGIRPNQVTFLGAVDAGSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAK 370

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG +  AR++F    +K+VIS+N MIA    +G G EA+  + +M+      +D+ ++G+
Sbjct: 371 CGEIRLARKVFDLSGEKDVISWNGMIAAYAHHGAGVEAIALYEKMQENRYKPNDVTYVGL 430

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L ACSHSGL  EG RIF+ M +   I  + EHYSCL+DL SRAG L+ A  ++  + +KP
Sbjct: 431 LSACSHSGLVDEGLRIFEYMAKDKSIAVRDEHYSCLIDLCSRAGRLDDAKRLINGLKLKP 490

Query: 475 NLA-LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
             + +W  LL  C  H N ++ ++    L+E + D+ G Y LLSNIYA AG W+ A +IR
Sbjct: 491 TSSTVWSALLGGCNAHGNESIGDLAARNLLEAEPDNAGTYTLLSNIYASAGKWKEAAKIR 550

Query: 534 KMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
             M  R +KK+ G S IE+   +  FV+ +    +SE +  ++Q
Sbjct: 551 SEMNDRGLKKQPGCSWIELANKVHVFVARDKSHSESELIYSLLQ 594



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 156/341 (45%), Gaps = 55/341 (16%)

Query: 166 ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGD 225
           A +VF       +   N  +      G +  AR +FD  P +D +SW+ M+  Y  ++G 
Sbjct: 27  AAAVFSTDAFSHVQDPNRRIAELAAAGRVPDARRLFDRTPDRDVVSWTAMVAAY-ARQGQ 85

Query: 226 ISSARILFEHMPI--KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
           +  A  L  H P   +++++W +++ GYA+   +  A+ LF+ MPERNV SW+ M++ YA
Sbjct: 86  LHEASALL-HRPDARRNVVTWTALLSGYARARRVDEARALFDRMPERNVVSWNTMLEAYA 144

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
             G    A  LF  M  +                      D G W              I
Sbjct: 145 SAGRMGAACALFDGMPVR----------------------DAGSW-------------NI 169

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           +  AL+    + G++DEARR+F  M ++NV+S+  MI+GL  +G  +EA   F     +G
Sbjct: 170 LLAALV----RSGTMDEARRLFERMPERNVMSWTTMISGLARSGSADEARALF-----DG 220

Query: 404 IPKDDLIFLGVLIACSHSGLA-TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
           +P+ +++    +I+     L   E   +F +M      E  +  ++ ++    +  +L++
Sbjct: 221 MPERNVVSWNAMISGYARNLRIDEALDLFMNMP-----ERDVASWNIMITGFIQNKDLKK 275

Query: 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLV 503
           A  + + MP K N+  W T++  C       +A  V  G++
Sbjct: 276 AQELFDEMP-KRNVVSWTTMMNGCLQGNESEMALQVFNGML 315



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 173/389 (44%), Gaps = 84/389 (21%)

Query: 50  LLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL 109
           LL +L    T  MD+A RLF ++ + N     TMI G  +S +  +A + +  M  +   
Sbjct: 170 LLAALVRSGT--MDEARRLFERMPERNVMSWTTMISGLARSGSADEARALFDGMPER--- 224

Query: 110 VDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSV 169
                                               +V   N +I  Y++   +  A  +
Sbjct: 225 ------------------------------------NVVSWNAMISGYARNLRIDEALDL 248

Query: 170 FEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIM-------------- 215
           F     +D+ SWN+++ GF++  ++ KA+E+FDEMP+++ +SW+ M              
Sbjct: 249 FMNMPERDVASWNIMITGFIQNKDLKKAQELFDEMPKRNVVSWTTMMNGCLQGNESEMAL 308

Query: 216 -------IDGYRKKK----GDISSARIL--------FEHMPIKDLISWNSMIDG-----Y 251
                  +DG R  +    G + +   L           M  K    +++ I+      Y
Sbjct: 309 QVFNGMLVDGIRPNQVTFLGAVDAGSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMKLY 368

Query: 252 AKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
           AK G++  A+++F+   E++V SW+ MI  YA HG   EA+ L+ +M     +P+ ++ +
Sbjct: 369 AKCGEIRLARKVFDLSGEKDVISWNGMIAAYAHHGAGVEAIALYEKMQENRYKPNDVTYV 428

Query: 312 GAISACAQVGALDLGKWIHVFMKRSR-ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
           G +SAC+  G +D G  I  +M + + I +     + LID+  + G LD+A+R+   +  
Sbjct: 429 GLLSACSHSGLVDEGLRIFEYMAKDKSIAVRDEHYSCLIDLCSRAGRLDDAKRLINGLKL 488

Query: 371 KNVIS--YNVMIAGLGMNGFGEEALKCFA 397
           K   S  ++ ++ G   N  G E++   A
Sbjct: 489 KPTSSTVWSALLGGC--NAHGNESIGDLA 515



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 89/433 (20%), Positives = 166/433 (38%), Gaps = 127/433 (29%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           N L++ L  S T     ++  ++   ++++    +S L  S ++      D+A  LF+ +
Sbjct: 168 NILLAALVRSGTMDEARRLFERMPERNVMSWTTMISGLARSGSA------DEARALFDGM 221

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNM---------------------KRKGLLVD 111
            + N    N MI GY ++    +AL  ++NM                     K+   L D
Sbjct: 222 PERNVVSWNAMISGYARNLRIDEALDLFMNMPERDVASWNIMITGFIQNKDLKKAQELFD 281

Query: 112 NYTYPFVLKACGVLMGLVEGTE-------------------------------------- 133
                 V+    ++ G ++G E                                      
Sbjct: 282 EMPKRNVVSWTTMMNGCLQGNESEMALQVFNGMLVDGIRPNQVTFLGAVDAGSNLAGLSE 341

Query: 134 ---IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
              +H  + K  F  D F+ + L+ +Y+KCG +  AR VF+ S  KD++SWN ++  +  
Sbjct: 342 GQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLARKVFDLSGEKDVISWNGMIAAYAH 401

Query: 191 CGEMGKAREVFDEMPQK-------------DAISWSIMID-GYR---------------- 220
            G   +A  ++++M +               A S S ++D G R                
Sbjct: 402 HGAGVEAIALYEKMQENRYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMAKDKSIAVRDE 461

Query: 221 ---------KKKGDISSARILFEHMPIKDLIS--WNSMI-----DGYAKIGDLVAAQQLF 264
                     + G +  A+ L   + +K   S  W++++      G   IGDL AA+ L 
Sbjct: 462 HYSCLIDLCSRAGRLDDAKRLINGLKLKPTSSTVWSALLGGCNAHGNESIGDL-AARNLL 520

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
              P+ N  +++++ + YA  G  KEA  +  EM  +G++            C+ +   +
Sbjct: 521 EAEPD-NAGTYTLLSNIYASAGKWKEAAKIRSEMNDRGLKKQ--------PGCSWI---E 568

Query: 325 LGKWIHVFMKRSR 337
           L   +HVF+ R +
Sbjct: 569 LANKVHVFVARDK 581


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 150/338 (44%), Positives = 223/338 (65%)

Query: 226 ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
           +SS   +FE +   DL+   +M+   AK GD+  A+ LF+ MP+R+  SW+ MI GYAQ 
Sbjct: 161 LSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQR 220

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
           G  +EAL LF+ M   GV+ + +S++  ++AC  +GALD GKW H ++++++I M + + 
Sbjct: 221 GQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLG 280

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
           TAL+DMY KCG++D A ++F+ M +KNV +++  I GL MNG+G++ L+ F+ M+ EGI 
Sbjct: 281 TALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIA 340

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
            +++ F+ VL  CS  G   EG   F SMKR  GIEP+LEHY C+VDL  RAG LE+ALN
Sbjct: 341 PNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALN 400

Query: 466 IVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM 525
            + +MP+KP+   WG LL ACR ++N+ L E     L+E++  + G YV LSNIYAD G 
Sbjct: 401 FINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIEVEGKNHGAYVSLSNIYADTGN 460

Query: 526 WEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           W+    +R+ M+   I K  G SV+E++G + EF SG+
Sbjct: 461 WDRVSNVRQSMKAEGISKLPGCSVMEVNGEVHEFFSGD 498



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 117/402 (29%), Positives = 194/402 (48%), Gaps = 44/402 (10%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           K+P ++L+    T   + QI  QL  N L+     L Q + S+   N  N+  + ++ +Q
Sbjct: 9   KHPTIALIDSFITLKELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLLYSNQILDQ 68

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV--DNYTYPFVLKACGVLMGLV 129
             +P  +  N+MIR Y++S  P K+  FY  + +   ++  DNYT+ F+++ C       
Sbjct: 69  CAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCA-QSACE 127

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
            G  +HG ++K GF  D  V +GLI MY++   +     VFE  +  DLV    ++    
Sbjct: 128 AGPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACA 187

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFE--------------- 234
           +CG++G AR +FD MPQ+D +SW+ MI GY  ++G    A  LF+               
Sbjct: 188 KCGDIGFARNLFDSMPQRDFVSWNAMIAGY-AQRGQSREALNLFKLMQMDGVKVNEVSMI 246

Query: 235 -------HMPIKDLISW-----------------NSMIDGYAKIGDLVAAQQLFNEMPER 270
                  H+   D   W                  +++D Y K G++  A ++F EM E+
Sbjct: 247 SVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEK 306

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           NV++WS  I G A +G  ++ L LF  M  +G+ P+ I+ +  +  C+ VG +D G+   
Sbjct: 307 NVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHF 366

Query: 331 VFMKRSR-ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
             MKR   I   +     ++D+Y + G L+EA     +M  K
Sbjct: 367 DSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLK 408


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 175/514 (34%), Positives = 282/514 (54%), Gaps = 72/514 (14%)

Query: 77  TYMHNTMIRGYTQS----SNP-QKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           +++ NT+IR + Q+    + P    +S +V M+  G+  D +T+PF+L++      L  G
Sbjct: 24  SFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLG 83

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
             +H ++++ G   D FV   LI MYS                                C
Sbjct: 84  RSVHAQILRFGLAIDPFVQTSLISMYSS-------------------------------C 112

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGY 251
           G +G AR+VF                                + +P  DL SWNS+I+  
Sbjct: 113 GNLGFARQVF--------------------------------DEIPQPDLPSWNSIINAN 140

Query: 252 AKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV---RPDVI 308
            + G +  A+ LF  MPERNV SWS MI+GY + G  KEAL LFREM   GV   RP+  
Sbjct: 141 FQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEF 200

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           ++ G ++AC ++GAL+ GKW H ++ +  + +D+++ TALIDMY KCGS+++A  +F ++
Sbjct: 201 TMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNL 260

Query: 369 -TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
              K+V++++ MI+GL M+G  EE +  F++M  +G+  + + FL V  AC H GL +EG
Sbjct: 261 GPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEG 320

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
               + M     I P ++HY C+VDL  RAG +++A N+V+SMPM+P++ +WG LL   R
Sbjct: 321 KDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSR 380

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
            H ++   E+ ++ L+EL+  + G YVLLSN+YA  G WE    +R +M    IKK  G 
Sbjct: 381 MHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGC 440

Query: 548 SVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
           S+IE+ G + EF  G+    ++ ++ ++++  ++
Sbjct: 441 SLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILE 474


>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06140, mitochondrial; Flags: Precursor
 gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
           from Arabidopsis thaliana gb|AC008153 and contains
           multiple PPR PF|01535 repeats [Arabidopsis thaliana]
 gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 558

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 196/555 (35%), Positives = 314/555 (56%), Gaps = 24/555 (4%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI-- 72
           L+++L  +KT  H  Q+ A++  +    E    S L  +    N L  D A   FN+I  
Sbjct: 10  LLTILSQAKTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRL--DFATSSFNRIPC 67

Query: 73  YQPNTYMHNTMIRGYTQSSNP--QKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
           ++ N +  NT++ GY++S        L  Y  M+R    VD++   F +KAC V +GL+E
Sbjct: 68  WKRNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKAC-VGLGLLE 126

Query: 131 -GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
            G  IHG  +K G   D +V   L+ MY++ G M  A+ VF+   +++ V W ++++G++
Sbjct: 127 NGILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYL 186

Query: 190 ECGEMGKAREVF-------DEMPQKDAISWSIMIDG----YRKKKGD-ISSARILFEHMP 237
           +     K  EVF       D     DA++   ++      +  K G  +    I    + 
Sbjct: 187 K---YSKDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFID 243

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
             D +   S+ID Y K   L  A++LF    +RNV  W+ +I G+A+     EA  LFR+
Sbjct: 244 QSDYLQ-ASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQ 302

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
           ML + + P+  ++   + +C+ +G+L  GK +H +M R+ I MD +  T+ IDMY +CG+
Sbjct: 303 MLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGN 362

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
           +  AR +F  M ++NVIS++ MI   G+NG  EEAL CF +M+++ +  + + F+ +L A
Sbjct: 363 IQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSA 422

Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
           CSHSG   EG++ F+SM R  G+ P+ EHY+C+VDLL RAGE+ +A + +++MP+KP  +
Sbjct: 423 CSHSGNVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMAS 482

Query: 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537
            WG LL ACR H+ V LA  + E L+ ++ +   +YVLLSNIYADAGMWE    +R+ M 
Sbjct: 483 AWGALLSACRIHKEVDLAGEIAEKLLSMEPEKSSVYVLLSNIYADAGMWEMVNCVRRKMG 542

Query: 538 KRKIKKETGRSVIEI 552
            +  +K  G+S  E+
Sbjct: 543 IKGYRKHVGQSATEV 557


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  324 bits (831), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 176/510 (34%), Positives = 284/510 (55%), Gaps = 12/510 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D A+R+F  +   + +  +++I  Y ++   + A+  Y  M  +G+  +  T+   L 
Sbjct: 60  SLDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALG 119

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C  + GL +G  IH  ++      D  + + L+ MY KC  M  AR VFEG + +++ S
Sbjct: 120 GCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRS 179

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSI----MIDGYRKKKGDISSARILFEHM 236
           +  ++  +V+ GE  +A E+F  M + +AI  +      I G  +  G++   R +  H+
Sbjct: 180 YTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHL 239

Query: 237 PIK----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
             +    +++  N+++  Y K G  V A+++F+ M  RNV SW+ MI  YAQHGNP+EAL
Sbjct: 240 ASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEAL 299

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            LF+ M    V P  +S   A++ACA +GALD G+ IH  +  + +    + +T+L+ MY
Sbjct: 300 NLFKRM---DVEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQM-ETSLLSMY 355

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            +CGSLD+ARR+F  M  ++  S N MIA    +G  ++AL+ + +ME EGIP D + F+
Sbjct: 356 ARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPADGITFV 415

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            VL+ACSH+ L  +    FQS+    G+ P +EHY C+VD+L R+G L  A  +VE+MP 
Sbjct: 416 SVLVACSHTSLVADCRDFFQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPY 475

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           + +   W TLL  C+ H ++   E     + EL   +   YV LSN+YA A  ++ A R+
Sbjct: 476 QTDAVAWMTLLSGCKRHGDLNRGERAARKVFELAPAETLPYVFLSNMYAAAKRFDDARRV 535

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
           RK M +R +      S IEID  +  F SG
Sbjct: 536 RKEMEERGVTTPVAVSYIEIDNELHMFTSG 565



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/380 (30%), Positives = 193/380 (50%), Gaps = 15/380 (3%)

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           M+ +G++ D +    ++ AC  L  L EG  +H  ++  GF  D+ +   L+ MY+KCG 
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGS 60

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKA----REVFDEMPQKDAISWSIMIDG 218
           +  A+ VFEG EIKDL +W+ ++  +   G    A    R +  E  + + ++++  + G
Sbjct: 61  LDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGG 120

Query: 219 YRK----KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
                    G     RIL   +P  D++  +S+++ Y K  ++V A+++F  M  RNV S
Sbjct: 121 CASVAGLADGRAIHQRILASKVPQDDVLQ-DSLLNMYLKCDEMVEARKVFEGMKARNVRS 179

Query: 275 WSIMIDGYAQHGNPKEALYLFREML-CQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
           ++ MI  Y Q G   EAL LF  M   + + P+  +    + A   +G L+ G+ +H  +
Sbjct: 180 YTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHL 239

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
                  +++VQ AL+ MY KCGS  EAR++F SMT +NVIS+  MIA    +G  +EAL
Sbjct: 240 ASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEAL 299

Query: 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
             F +M+ E      + F   L AC+  G   EG  I   +       P++E  + L+ +
Sbjct: 300 NLFKRMDVE---PSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQME--TSLLSM 354

Query: 454 LSRAGELEQALNIVESMPMK 473
            +R G L+ A  +   M  +
Sbjct: 355 YARCGSLDDARRVFNRMKTR 374



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 144/271 (53%), Gaps = 7/271 (2%)

Query: 226 ISSARILFEHMPIK----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           +   R L EH+ I     D+    +++  YAK G L  A+++F  M  +++F+WS +I  
Sbjct: 26  LEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIISA 85

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
           YA+ G  + A+ L+R M+ +GV P+V++   A+  CA V  L  G+ IH  +  S++  D
Sbjct: 86  YARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQD 145

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM-E 400
            ++Q +L++MY+KC  + EAR++F  M  +NV SY  MI+     G   EAL+ F++M +
Sbjct: 146 DVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSK 205

Query: 401 TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460
            E I  +   F  +L A    G   +G ++ + +    G +  +   + LV +  + G  
Sbjct: 206 VEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASR-GFDTNVVVQNALVTMYGKCGSP 264

Query: 461 EQALNIVESMPMKPNLALWGTLLLACRNHQN 491
            +A  + +SM  + N+  W +++ A   H N
Sbjct: 265 VEARKVFDSMTAR-NVISWTSMIAAYAQHGN 294


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 180/507 (35%), Positives = 297/507 (58%), Gaps = 10/507 (1%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A  LF+ +   +    N MI G  Q+ N  +AL     M+ +G+ +D+ T   +L  C  
Sbjct: 226 ARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQ 285

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L  +   T IH  V+K G   ++FV N LI MY+K G++G A+ VF+   ++D+VSWN +
Sbjct: 286 LGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSI 345

Query: 185 LRGFVECGEMGKAREVFDEMP----QKDAISW----SIMIDGYRKKKGDISSARILFEHM 236
           +  + +  +   AR  F +M     + D ++     SI       K        I+    
Sbjct: 346 IAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGW 405

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
            ++ ++  N+++D YAK+G + +A ++FN +P ++V SW+ +I GY Q+G   EA+ ++R
Sbjct: 406 LMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYR 465

Query: 297 EML-CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
            M  C+ ++ +  + +  ++A A VGAL  G  IH  + ++ + +D+ V T LID+Y KC
Sbjct: 466 MMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKC 525

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
           G L +A  +FY + +++ + +N +I+  G++G GE+ALK F +M+ EG+  D + F+ +L
Sbjct: 526 GRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLL 585

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
            ACSHSGL  EG   F  M+ + GI+P L+HY C+VDLL RAG LE A + ++ MP+ P+
Sbjct: 586 SACSHSGLVDEGKWFFHLMQEY-GIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPD 644

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535
            ++WG LL ACR H N+ L +   + L E+ +++ G YVLLSNIYA+ G WE   ++R +
Sbjct: 645 ASIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSL 704

Query: 536 MRKRKIKKETGRSVIEIDGNIKEFVSG 562
            R+R +KK  G S IE++  +  F +G
Sbjct: 705 ARERGLKKTPGWSSIEVNRRVDIFYTG 731



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 133/426 (31%), Positives = 234/426 (54%), Gaps = 17/426 (3%)

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALS-FYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           F+QI + + Y  N+MI  Y ++ + ++A+  FY  +       D YT+P VLKAC  L  
Sbjct: 131 FDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTL-- 188

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
            V+G +IH  V K+GF  DVFV   LI MYS+ G +G ARS+F+    +D+ SWN ++ G
Sbjct: 189 -VDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISG 247

Query: 188 FVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARIL----FEHMPIK 239
            ++ G   +A +V DEM  +    D+++ + ++     + GDIS+A ++     +H    
Sbjct: 248 LIQNGNAAQALDVLDEMRLEGINMDSVTVASILP-VCAQLGDISTATLIHLYVIKHGLEF 306

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           +L   N++I+ YAK G+L  AQ++F +M  R+V SW+ +I  Y Q+ +P  A   F +M 
Sbjct: 307 ELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQ 366

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVF-MKRSRITMDMIVQTALIDMYMKCGSL 358
             G+ PD+++++   S  AQ       + +H F M+R  +   +++  A++DMY K G +
Sbjct: 367 LNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVI 426

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM-ETEGIPKDDLIFLGVLIA 417
           D A ++F  +  K+V+S+N +I+G   NG   EA++ +  M E   I  +   ++ +L A
Sbjct: 427 DSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAA 486

Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
            +H G   +G RI   + +   +   +   +CL+DL  + G L  A+ +   +P + ++ 
Sbjct: 487 YAHVGALQQGMRIHGHLIK-TNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVP 545

Query: 478 LWGTLL 483
            W  ++
Sbjct: 546 -WNAII 550



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 171/362 (47%), Gaps = 24/362 (6%)

Query: 22  SKTTTHILQILAQL---TTNDLITEPFTLSQLLMSLTSPNTL--------NMDQAERLFN 70
           S T   IL + AQL   +T  LI        L   L   N L        N+  A+++F 
Sbjct: 273 SVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQ 332

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
           Q++  +    N++I  Y Q+ +P  A  F+  M+  GL  D  T   +            
Sbjct: 333 QMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKN 392

Query: 131 GTEIHGEVVKMGFLCDVFVV-NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
              +HG +++ G+L +  V+ N ++ MY+K G +  A  VF    +KD+VSWN ++ G+ 
Sbjct: 393 SRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYT 452

Query: 190 ECGEMGKAREVFDEMPQKDAI-----SWSIMIDGYRKKKGDISSARILFEHMPIK----- 239
           + G   +A EV+  M +   I     +W  ++  Y    G +     +  H+ IK     
Sbjct: 453 QNGLASEAIEVYRMMEECREIKLNQGTWVSILAAY-AHVGALQQGMRIHGHL-IKTNLHL 510

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           D+     +ID Y K G LV A  LF ++P  +   W+ +I  +  HG+ ++AL LFREM 
Sbjct: 511 DVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQ 570

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
            +GV+PD ++ +  +SAC+  G +D GKW    M+   I   +     ++D+  + G L+
Sbjct: 571 DEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLE 630

Query: 360 EA 361
            A
Sbjct: 631 MA 632



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 107/449 (23%), Positives = 213/449 (47%), Gaps = 30/449 (6%)

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
            +H  +V  G +   F+   L+ +Y+  G +  +R  F+  + KD+ +WN ++  +V  G
Sbjct: 94  RLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNG 153

Query: 193 EMGKAREVFDEMP-----QKDAISW-------SIMIDGYRKKKGDISSARILFEHMPIKD 240
              +A + F ++      Q D  ++         ++DG   +K      ++ F+     D
Sbjct: 154 HFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVDG---RKIHCWVFKLGFQW----D 206

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
           +    S+I  Y++ G +  A+ LF++MP R++ SW+ MI G  Q+GN  +AL +  EM  
Sbjct: 207 VFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRL 266

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
           +G+  D ++V   +  CAQ+G +     IH+++ +  +  ++ V  ALI+MY K G+L +
Sbjct: 267 EGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGD 326

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           A+++F  M  ++V+S+N +IA    N     A   F +M+  G+  D L  + +    + 
Sbjct: 327 AQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQ 386

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
           S        +   + R   +   +   + ++D+ ++ G ++ A  +   +P+K ++  W 
Sbjct: 387 SRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVK-DVVSWN 445

Query: 481 TLLLACRNHQNVTLAEVV-----VEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535
           TL+      QN   +E +     +E   E+K +  G +V +   YA  G  +  +RI   
Sbjct: 446 TLISGYT--QNGLASEAIEVYRMMEECREIKLNQ-GTWVSILAAYAHVGALQQGMRIHGH 502

Query: 536 MRKRKIKKE--TGRSVIEIDGNIKEFVSG 562
           + K  +  +   G  +I++ G     V  
Sbjct: 503 LIKTNLHLDVFVGTCLIDLYGKCGRLVDA 531



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 21/189 (11%)

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
           L K +H  +  S       +   L+++Y   G +  +R  F  + +K+V ++N MI+   
Sbjct: 91  LAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYV 150

Query: 385 MNGFGEEALKCFAQ-METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC----- 438
            NG   EA+ CF Q +       D   F  VL AC           +    K HC     
Sbjct: 151 RNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQ---------TLVDGRKIHCWVFKL 201

Query: 439 GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT----- 493
           G +  +   + L+ + SR G +  A ++ + MP + ++  W  ++     + N       
Sbjct: 202 GFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFR-DMGSWNAMISGLIQNGNAAQALDV 260

Query: 494 LAEVVVEGL 502
           L E+ +EG+
Sbjct: 261 LDEMRLEGI 269


>gi|297847764|ref|XP_002891763.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337605|gb|EFH68022.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 828

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 174/513 (33%), Positives = 288/513 (56%), Gaps = 33/513 (6%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKG-LLVDNYTYPFVLKACG 123
           A  LF+++ + N      MI GY ++   +     ++ M+++G + V++ T   + +AC 
Sbjct: 227 ARSLFDRMPERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVRVNSNTLAVMFRACR 286

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
                 EG++IHG + +M    D+F+ N LI MYSK G+MG                   
Sbjct: 287 DFFRYREGSQIHGLLSRMPLEFDLFLGNSLISMYSKLGYMG------------------- 327

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243
                       +A+ VF  M  KD++SW+ +I G  +++  IS A  LFE MP KD++S
Sbjct: 328 ------------EAKAVFGVMKYKDSVSWNSLITGLVQRE-QISEAYELFEKMPGKDMVS 374

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
           W  MI G++  G++    +LF  MPE++  +W+ MI  +  +G  +EAL  F +ML + V
Sbjct: 375 WTDMIKGFSGKGEISKCVELFGMMPEKDDITWTAMISAFVSNGYYEEALCWFHKMLRKQV 434

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
            P+  +    +SA A +  L  G  IH  + +  +  D+ VQ +L+ MY KCG+ ++A +
Sbjct: 435 CPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNMANDLSVQNSLVSMYCKCGNTNDAYK 494

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           IF  +++ N++SYN MI+G   NGFG+EA+K F+ +E+ G   + + FL +L AC H G 
Sbjct: 495 IFSCISEPNIVSYNTMISGFSYNGFGKEAVKLFSMLESTGKEPNGVTFLALLSACVHVGY 554

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
              G++ F+SMK   GIEP  +HY+C+VDL  R+G L++A N++ +MP +P+  +WG+LL
Sbjct: 555 VDLGWKYFKSMKFSYGIEPGPDHYACMVDLFGRSGLLDEAYNLISTMPCEPHSGVWGSLL 614

Query: 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
            A + H  V LAE+  + L+EL+ D    YV+LS +Y+  G      RI  + + ++IKK
Sbjct: 615 SASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSMVGKNSDCDRIMNIKKSKRIKK 674

Query: 544 ETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
           + G S I + G +  F++G+   +  EE+   +
Sbjct: 675 DPGSSWIILKGQVHNFLAGDESHLNLEEIAFTL 707



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 166/359 (46%), Gaps = 44/359 (12%)

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
           +F  N  I   ++ G++  A ++F     + +VSWN ++  + E G+M KA +VFDEMP 
Sbjct: 50  IFQCNSQISKLARNGNLQEAEAIFRQMSHRSIVSWNAMISAYAENGKMSKAWQVFDEMPV 109

Query: 207 KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNE 266
           +   S++ MI    K K D+  A  LF  +P K+ +S+ +MI G+ + G    A+ L+ E
Sbjct: 110 RATTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAECLYAE 169

Query: 267 MPE--RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
            P   R+  + ++++ GY + G   EA+ +F  M  +                       
Sbjct: 170 TPVKFRDPVASNVLLSGYLRVGKWNEAVRVFEGMAVK----------------------- 206

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
                           +++  ++++D Y K G + +AR +F  M ++NVI++  MI G  
Sbjct: 207 ----------------EVVSYSSMVDGYCKMGRILDARSLFDRMPERNVITWTAMIDGYF 250

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLI-ACSHSGLATEGYRIFQSMKRHCGIEPK 443
             GF E+    F +M  EG  + +   L V+  AC       EG +I   + R   +E  
Sbjct: 251 KAGFFEDGFGLFLRMRQEGDVRVNSNTLAVMFRACRDFFRYREGSQIHGLLSRM-PLEFD 309

Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
           L   + L+ + S+ G + +A  +   M  K +++ W +L+      + ++ A  + E +
Sbjct: 310 LFLGNSLISMYSKLGYMGEAKAVFGVMKYKDSVS-WNSLITGLVQREQISEAYELFEKM 367


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 188/537 (35%), Positives = 295/537 (54%), Gaps = 21/537 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKG-LLVDNYTYPFVLK 120
           +D A ++F+ +  P+T + NT++ G + S    +A+  +  M   G +  D  T   VL 
Sbjct: 165 VDHARKVFDTVPSPDTVLWNTLLAGLSGS----EAVESFARMVCDGSVRPDATTLASVLP 220

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           A   +  +  G  +H    K G      V+ GLI +YSKCG +  AR +F+  E  DLV+
Sbjct: 221 AAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVA 280

Query: 181 WNLVLRGFVECGEMGKAREVFDEM------PQKDAISWSIMIDGYRKKKGDISSARILFE 234
           +N ++ G+   G +G +  +F E+      P    +   I +       G    A+ L  
Sbjct: 281 YNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPV---HSPFGHDLLAQCLHG 337

Query: 235 HMPIKDLISWNSMIDG-----YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
            + +K   + NS +       + ++ D+ +A++ F+ MPE+ + SW+ MI GYAQ+G  +
Sbjct: 338 FV-LKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTE 396

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
            A+ LF +M+   VRP+ I++   +SACAQ+GAL LGKW+H  +    +  ++ V TALI
Sbjct: 397 MAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALI 456

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           DMY KCGS+ EARRIF +M  KNV+S+N MIAG G++G G EALK +  M    +     
Sbjct: 457 DMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSA 516

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            FL VL ACSH GL  EG+++F+SM     I P +EH +C+VDLL RAG+L++A  ++  
Sbjct: 517 TFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISE 576

Query: 470 MPMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528
            P       +WG LL AC  H++  LA++  + L EL  ++ G YVLLSN++     +  
Sbjct: 577 FPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLHTSKKQYSE 636

Query: 529 ALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
           A  +R+  + RK+ K  G ++IEI      F++G+    QSE +   ++      IE
Sbjct: 637 AAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYLEKLTAKMIE 693



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 120/495 (24%), Positives = 225/495 (45%), Gaps = 34/495 (6%)

Query: 5   AAAKFSLKNPLVSLLQISKTTTHILQILA-QLTTNDLITEPFTLSQLLM---SLTSPNTL 60
           AA   +L+ P + L+ +S T  H+ QILA  L +     +P   + LL+   SL +P   
Sbjct: 11  AADAAALRRPYLRLVALSSTLRHLDQILAVSLASGHYPLDPAPATSLLLRYASLRAPT-- 68

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
                 RLF    +P+ ++ N ++R    S  P+  L F           D++++ F   
Sbjct: 69  --GHLLRLFRGFPRPDRFLRNALLRSL-PSLRPR--LLFPCP--------DSFSFAFAAT 115

Query: 121 ACGVL-------MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS 173
           +   L               +H   V  G+  D FV + L  +Y     +  AR VF+  
Sbjct: 116 SLAALCSRGGGAASSSAARALHALAVAAGYAADTFVASALAKLYFVLSRVDHARKVFDTV 175

Query: 174 EIKDLVSWNLVLRGFVECGEMGK-AREVFDEMPQKDAISWSIMIDGYRKKKGDISSARIL 232
              D V WN +L G      +   AR V D   + DA + + ++     +  D++  R +
Sbjct: 176 PSPDTVLWNTLLAGLSGSEAVESFARMVCDGSVRPDATTLASVLPA-AAEVADVTMGRCV 234

Query: 233 FEHMPIKDLISWNSMIDG----YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNP 288
                   L     ++ G    Y+K GD+ +A+ LF+ M + ++ +++ +I GY+ +G  
Sbjct: 235 HSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMV 294

Query: 289 KEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTAL 348
             ++ LF E++  G+ P+  +++  I   +  G   L + +H F+ +S  T +  V TA+
Sbjct: 295 GSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAI 354

Query: 349 IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD 408
             ++ +   ++ AR+ F +M +K + S+N MI+G   NG  E A+  F QM    +  + 
Sbjct: 355 TTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNP 414

Query: 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468
           +     L AC+  G  + G  + + +     +EP +   + L+D+ ++ G + +A  I  
Sbjct: 415 ITISSTLSACAQLGALSLGKWLHRIITEE-DLEPNVYVMTALIDMYAKCGSISEARRIFN 473

Query: 469 SMPMKPNLALWGTLL 483
           +M  K N+  W  ++
Sbjct: 474 TMDNK-NVVSWNAMI 487



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 151/326 (46%), Gaps = 18/326 (5%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A  LF+ + +P+   +N +I GY+ +     +++ +  +   GL  ++ T   ++ 
Sbjct: 262 DVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIP 321

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
                   +    +HG V+K GF  +  V   +  ++ +   M  AR  F+    K + S
Sbjct: 322 VHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMES 381

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS-------ARILF 233
           WN ++ G+ + G    A  +F++M + +     I I         + +        RI+ 
Sbjct: 382 WNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIIT 441

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
           E     ++    ++ID YAK G +  A+++FN M  +NV SW+ MI GY  HG   EAL 
Sbjct: 442 EEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALK 501

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ------TA 347
           L+++ML   + P   + +  + AC+  G ++ G W  VF  RS +T D  +       T 
Sbjct: 502 LYKDMLDAHLLPTSATFLSVLYACSHGGLVEEG-W-KVF--RS-MTDDYAINPGIEHCTC 556

Query: 348 LIDMYMKCGSLDEARRIFYSMTKKNV 373
           ++D+  + G L EA  +     K  V
Sbjct: 557 MVDLLGRAGQLKEAFELISEFPKSAV 582



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 96/195 (49%), Gaps = 9/195 (4%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL-----NMDQAERLF 69
           LV+L+ +     H   +LAQ     ++   FT +  +   T+  TL     +M+ A + F
Sbjct: 316 LVALIPVHSPFGH--DLLAQCLHGFVLKSGFTANSPVS--TAITTLHCRLNDMESARKAF 371

Query: 70  NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV 129
           + + +      N MI GY Q+   + A++ +  M +  +  +  T    L AC  L  L 
Sbjct: 372 DTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALS 431

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
            G  +H  + +     +V+V+  LI MY+KCG +  AR +F   + K++VSWN ++ G+ 
Sbjct: 432 LGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYG 491

Query: 190 ECGEMGKAREVFDEM 204
             G+  +A +++ +M
Sbjct: 492 LHGQGAEALKLYKDM 506


>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
          Length = 435

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 160/363 (44%), Positives = 233/363 (64%), Gaps = 1/363 (0%)

Query: 216 IDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
           I G   K+G    AR++F++M  K+ ++WN+MIDGY + G +  A +LF+EMPER++ SW
Sbjct: 58  ILGMYSKRGRFRKARLVFDYMEEKNSVTWNTMIDGYMRNGQVDDAVKLFDEMPERDLISW 117

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
           + MI+G+ + G  +EAL  FREM   GV+PD ++++ A++AC  +GAL  G WIH ++  
Sbjct: 118 TAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVVS 177

Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
                ++ V  +LID+Y +CG ++ AR++F  M K+ V+S+N +I G   NG   E+L  
Sbjct: 178 QDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVY 237

Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           F +M+ EG   + + F G L AC+H GL  EG R FQSMKR   I P++EHY CLVDL S
Sbjct: 238 FRKMQEEGFKPNAVTFTGALAACNHVGLVEEGLRYFQSMKRDYRISPRIEHYGCLVDLYS 297

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT-LAEVVVEGLVELKADDCGLYV 514
           RAG LE AL +V+SMPMKPN  + G+LL ACR   N T LAE V++ L +L       YV
Sbjct: 298 RAGRLEDALKVVQSMPMKPNEVVIGSLLAACRTQGNNTVLAERVMKHLSDLNVKSHSNYV 357

Query: 515 LLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELEL 574
           +LSN+YA  G WE A ++R+ M+   +KKE G S IEID     F++G+   V++  +  
Sbjct: 358 ILSNMYAADGKWEGASKMRRKMKGLGLKKEPGFSSIEIDDCTHVFMAGDNTHVETTNIRE 417

Query: 575 VIQ 577
           V++
Sbjct: 418 VLE 420



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 162/315 (51%), Gaps = 44/315 (13%)

Query: 100 YVNMKRKGLLVDNYTYPFVLKACGVLMGLVE--GTEIHGEVVKMGF-LCDVFVVNGLIGM 156
           +  M+  G+  ++ T+  +L   G L+   E  G  +HG   K+G     V V   ++GM
Sbjct: 2   FSGMRLAGVEPNHITFIALLSGWGDLLSGSEALGDLLHGYACKLGLDRAHVMVGTAILGM 61

Query: 157 YSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMI 216
           YSK G    AR VF+  E K+ V+WN ++ G++  G++  A ++FDEMP++D ISW+ MI
Sbjct: 62  YSKRGRFRKARLVFDYMEEKNSVTWNTMIDGYMRNGQVDDAVKLFDEMPERDLISWTAMI 121

Query: 217 DGYRKKKGDISSARILFEHMPIK----DLIS------------------W---------- 244
           +G+  KKG    A   F  M I     D ++                  W          
Sbjct: 122 NGF-VKKGFHEEALAWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVVSQDF 180

Query: 245 -------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
                  NS+ID Y + G +  A+Q+F++M +R V SW+ +I G+A +G+  E+L  FR+
Sbjct: 181 KNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRK 240

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS-RITMDMIVQTALIDMYMKCG 356
           M  +G +P+ ++  GA++AC  VG ++ G      MKR  RI+  +     L+D+Y + G
Sbjct: 241 MQEEGFKPNAVTFTGALAACNHVGLVEEGLRYFQSMKRDYRISPRIEHYGCLVDLYSRAG 300

Query: 357 SLDEARRIFYSMTKK 371
            L++A ++  SM  K
Sbjct: 301 RLEDALKVVQSMPMK 315



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 99/215 (46%), Gaps = 8/215 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A +LF+++ + +      MI G+ +    ++AL+++  M+  G+  D       L A
Sbjct: 99  VDDAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAA 158

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G  IH  VV   F  +V V N LI +Y +CG +  AR VF+  E + +VSW
Sbjct: 159 CTNLGALSFGLWIHRYVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSW 218

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR---KKKGDISSARILFEHMPI 238
           N V+ GF   G   ++   F +M ++     ++   G        G +      F+ M  
Sbjct: 219 NSVIVGFAANGHAHESLVYFRKMQEEGFKPNAVTFTGALAACNHVGLVEEGLRYFQSMKR 278

Query: 239 KDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP 268
              IS     +  ++D Y++ G L  A ++   MP
Sbjct: 279 DYRISPRIEHYGCLVDLYSRAGRLEDALKVVQSMP 313


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 183/521 (35%), Positives = 291/521 (55%), Gaps = 13/521 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ A+ LF  +   +    N+++ GY Q  N ++ L   + MK  G+  D  T+  ++ A
Sbjct: 197 VEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSA 256

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
             +   L  G  +HG +++ G   D  +   LIGMY KCG++  A  +FEG   KD++SW
Sbjct: 257 AAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISW 316

Query: 182 NLVLRGFVE--CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS--------ARI 231
             ++ G V+  C +M  A  VF  M +   +  +  I        ++ S          I
Sbjct: 317 TAMISGLVQNDCADM--AVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYI 374

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           L + + + D+ S NS++  YAK G L  +  +F+ M  R++ SW+ ++ G+AQ+G+  +A
Sbjct: 375 LRQRIKL-DIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKA 433

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           L LF EM     RPD I+V+  + ACA +GAL  GKWIH F+ +S +   +++ TAL+DM
Sbjct: 434 LLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDM 493

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y KCG L  A++ F  M +++++S++ +IAG G +G GE AL+ ++     GI  + +I+
Sbjct: 494 YSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIY 553

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           L +L ACSH+GL  +G   F SM +  GIEP+LEH +C+VDLLSRAG +E+A +  + M 
Sbjct: 554 LSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMF 613

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
            KP++ + G LL ACR   NV L ++V   +V LK  + G YV L++ YA    W+    
Sbjct: 614 PKPSMDVLGILLDACRTTGNVELGDIVAREIVILKPANAGNYVQLAHSYASMKRWDGVGE 673

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           +   M+   +KK  G S IE+ G I  F +      Q EE+
Sbjct: 674 VWTQMKSLHLKKLPGWSFIELHGTITTFFTDHSSHPQFEEI 714



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 118/436 (27%), Positives = 224/436 (51%), Gaps = 20/436 (4%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A ++F+ +   N     TMI  YT++     A S Y  M+R+G+       P  +   G+
Sbjct: 102 ARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGI------QPSSVTMLGL 155

Query: 125 LMGLVEGTE---IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           L G++E      +H  V++ GF  DV + N ++ +Y KCG +  A+++FE  + +D++SW
Sbjct: 156 LSGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISW 215

Query: 182 NLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKK----GDISSARILF 233
           N ++ G+ + G + +  ++   M     + D  ++  ++     +     G +    IL 
Sbjct: 216 NSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILR 275

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
             +     I   S+I  Y K G++ +A ++F  M  ++V SW+ MI G  Q+     A+ 
Sbjct: 276 AGLEQDSHIE-TSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVT 334

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           +FR ML   V P   ++   ++ACA++G+  LG  +H ++ R RI +D+  Q +L+ MY 
Sbjct: 335 VFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYA 394

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCG L+++  +F  M++++++S+N +++G   NG   +AL  F +M       D +  + 
Sbjct: 395 KCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVS 454

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           +L AC+  G   +G  I   + + C + P +   + LVD+ S+ G+L  A    + MP +
Sbjct: 455 LLQACASIGALHQGKWIHNFVTKSC-LGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQ 513

Query: 474 PNLALWGTLLLACRNH 489
            +L  W +++    +H
Sbjct: 514 -DLVSWSSIIAGYGSH 528



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/413 (28%), Positives = 200/413 (48%), Gaps = 6/413 (1%)

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           P T  +N +I   + +      L  Y +M       D +T+P ++KAC  L     G   
Sbjct: 11  PATKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSF 70

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           H  V+  G+  D ++   LI  YSK GH   AR VF+  + +++V W  ++  +   GE 
Sbjct: 71  HQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEH 130

Query: 195 GKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARIL----FEHMPIKDLISWNSMIDG 250
             A  +++ M ++     S+ + G      ++   + L     ++    D+   NSM++ 
Sbjct: 131 DVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNV 190

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           Y K G +  AQ LF  M  R+V SW+ ++ GYAQ GN +E L L   M   G+ PD  + 
Sbjct: 191 YCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTF 250

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
              +SA A    L +GK +H  + R+ +  D  ++T+LI MY+KCG+++ A RIF  M  
Sbjct: 251 GSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMH 310

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           K+VIS+  MI+GL  N   + A+  F +M    +         VL AC+  G    G  +
Sbjct: 311 KDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSV 370

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
              + R   I+  +   + LV + ++ G LEQ+ ++ + M  + ++  W  ++
Sbjct: 371 HGYILRQ-RIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRR-DIVSWNAIV 421



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 152/351 (43%), Gaps = 72/351 (20%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N++ A R+F  +   +      MI G  Q+     A++ +  M +  ++    T   VL 
Sbjct: 297 NVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLA 356

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L     GT +HG +++     D+   N L+ MY+KCGH+  + SVF+    +D+VS
Sbjct: 357 ACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVS 416

Query: 181 WNLVLRGFVECGEMGKAREVFDEM----PQKDAIS------------------W------ 212
           WN ++ G  + G + KA  +F+EM     + D+I+                  W      
Sbjct: 417 WNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVT 476

Query: 213 -----------SIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQ 261
                      + ++D Y  K GD+ SA+  F+ MP +DL+SW+S+I GY          
Sbjct: 477 KSCLGPCILIDTALVDMY-SKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGS-------- 527

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
                                  HG  + AL ++ + L  G++P+ +  +  +SAC+  G
Sbjct: 528 -----------------------HGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNG 564

Query: 322 ALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
            +D G  + H   K   I   +  +  ++D+  + G ++EA   +  M  K
Sbjct: 565 LVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPK 615


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 188/557 (33%), Positives = 316/557 (56%), Gaps = 55/557 (9%)

Query: 10  SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLM--SLTSPNTLNMDQAER 67
           S  + L   +   +T   + QI A    +  I +    +++L   + +  +  ++D A +
Sbjct: 14  SPASSLFPQINTCRTIRDLSQIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRDLDYAHK 73

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQK--ALSFYVNMKRKGLLVDN-YTYPFVLKACGV 124
           +FNQ+ Q N +  NT+IRG+++S   +   A++ +  M     +  N +T+P VLKAC  
Sbjct: 74  IFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAK 133

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
              + +G +IHG  +K GF  D FV++ L+ MY  CG M  A  +F     K+++   +V
Sbjct: 134 TGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLF----YKNIIEREMV 189

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
           +                             MID  RK+ G++               + W
Sbjct: 190 M-----------------------------MID-RRKRDGEV---------------VLW 204

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML-CQGV 303
           N MIDGY ++GD  AA+ LF++M +R+V SW+ MI GY+Q+G  K+A+ +FREM   + +
Sbjct: 205 NVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDI 264

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
           RP+ ++++  + A +++G+L+LG+W+H++ + S I +D ++ +ALIDMY KCG +++A  
Sbjct: 265 RPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIM 324

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           +F  + ++NVI+++ MI G  ++G   +A+ CF +M   G+   D+ ++ +L ACSH+GL
Sbjct: 325 VFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGL 384

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             EG R F  M    G+EP++EHY C+VDLL R G L++A   + +MP+KP+  +W  LL
Sbjct: 385 VEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKALL 444

Query: 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
            ACR H+NV + + V   L+++   D G YV LSN+YA  G W     +R  M++  I+K
Sbjct: 445 GACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEMDIRK 504

Query: 544 ETGRSVIEIDGNIKEFV 560
           + G S I+IDG + EF+
Sbjct: 505 DPGCSWIDIDGVLHEFL 521


>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
 gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 184/559 (32%), Positives = 299/559 (53%), Gaps = 14/559 (2%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLI--TEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           L +LL +     H+ QI   L T+ +        LS+LL    +  T     A RL  Q+
Sbjct: 4   LKTLLDLPLHFLHLKQIHCLLLTSPIFYTRRDLFLSRLLRRCCTAAT-QFRYARRLLCQL 62

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSF--YVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
              +  + +++I  ++      + LSF  Y +M+R G++   +T+P +LKA   L     
Sbjct: 63  QTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRD-SN 121

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
             + H  +VK G   D FV N LI  YS  G    A  +F+G+E KD+V+W  ++ GFV 
Sbjct: 122 PFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVR 181

Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR-------ILFEHMPIK-DLI 242
            G   +A   F EM +    +  + +    K  G +   R       +  E   +K D+ 
Sbjct: 182 NGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVF 241

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
             +S++D Y K      AQ++F+EMP RNV +W+ +I GY Q     + + +F EML   
Sbjct: 242 IGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSD 301

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           V P+  ++   +SACA VGAL  G+ +H +M ++ I ++    T LID+Y+KCG L+EA 
Sbjct: 302 VAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAI 361

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
            +F  + +KNV ++  MI G   +G+  +A   F  M +  +  +++ F+ VL AC+H G
Sbjct: 362 LVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGG 421

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
           L  EG R+F SMK    +EPK +HY+C+VDL  R G LE+A  ++E MPM+P   +WG L
Sbjct: 422 LVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGAL 481

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
             +C  H++  L +     +++L+    G Y LL+N+Y+++  W+   R+RK M+ +++ 
Sbjct: 482 FGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVV 541

Query: 543 KETGRSVIEIDGNIKEFVS 561
           K  G S IE+ G + EF++
Sbjct: 542 KSPGFSWIEVKGKLCEFIA 560


>gi|357477477|ref|XP_003609024.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510079|gb|AES91221.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 544

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 206/567 (36%), Positives = 294/567 (51%), Gaps = 61/567 (10%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITE-PFTLSQLLMSLTSPNTLNMDQAERLFNQ--I 72
            SLL    + + + Q+ A +T + L +  P T   +  S  SP   N+  A  LF    I
Sbjct: 10  TSLLNKLSSMSELKQLQAIITKSGLHSHIPLTTKLIFFSALSPFG-NLSHAYSLFQHSSI 68

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE-- 130
              N ++ NTMIR ++ S  P +AL  Y  M    ++ D+YT  FVLKAC     L++  
Sbjct: 69  LIHNPFISNTMIRAFSHSCFPLQALLIYNQMLINNVVSDSYTCNFVLKACSRAYKLIQES 128

Query: 131 ----------------GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174
                           GTEIH  V+K+GF  D  V N L+  YS+CG             
Sbjct: 129 GSCDDDDDNLVVVYNKGTEIHCRVIKIGFQNDPSVQNSLLYFYSQCG------------- 175

Query: 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFE 234
              LVS                AR +FD++     +SW+IMI  Y  +  D   A  L E
Sbjct: 176 ---LVS---------------VARYLFDQIKDTSLVSWNIMISAY-DRVDDYELADHLLE 216

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
            MP K +ISWN++I  Y ++GD+ AA+++F  MPERN  SW+ MI G     +   AL L
Sbjct: 217 LMPCKTVISWNTLIARYIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALEL 276

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           F EM   GV+P  ++++  + ACA+ GAL++G  I+  +K     ++  +  AL++MY K
Sbjct: 277 FSEMQNAGVKPTEVTLISILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCK 336

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE---GIPKDDLIF 411
           CG+L  A  IF  M  K V  +N M+ GL ++G+ EE  + F +ME      I  D + F
Sbjct: 337 CGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTF 396

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           +GVL+ACSH GL  +    F  M +   I P  +HY C+VDLL+R G LE+A  I+ + P
Sbjct: 397 IGVLVACSHKGLVDKARWYFDHMVKRYKIVPDSKHYGCMVDLLTRRGLLEEAYQIIMTAP 456

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
            + ++ LW TLL ACR   N  LAE+  + L +LK    G YVLLSNIYA+AG W+   R
Sbjct: 457 FQNSVVLWRTLLGACRTQSNTELAEISFKQLAKLKQLIDGDYVLLSNIYAEAGRWDEVER 516

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKE 558
           +R  M    + ++ G S I    N+KE
Sbjct: 517 LRSEMDYLHVPRQAGYSQI----NMKE 539


>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
 gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
           DEFECTIVE 247; Flags: Precursor
 gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
           thaliana gb|AC007109.6, and contains two DUF17 PF|01535
           domains [Arabidopsis thaliana]
 gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
          Length = 500

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 155/363 (42%), Positives = 235/363 (64%), Gaps = 1/363 (0%)

Query: 216 IDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
           I G   K+G    AR++F++M  K+ ++WN+MIDGY + G +  A ++F++MPER++ SW
Sbjct: 115 IIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISW 174

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
           + MI+G+ + G  +EAL  FREM   GV+PD ++++ A++AC  +GAL  G W+H ++  
Sbjct: 175 TAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLS 234

Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
                ++ V  +LID+Y +CG ++ AR++FY+M K+ V+S+N +I G   NG   E+L  
Sbjct: 235 QDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVY 294

Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           F +M+ +G   D + F G L ACSH GL  EG R FQ MK    I P++EHY CLVDL S
Sbjct: 295 FRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYS 354

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNH-QNVTLAEVVVEGLVELKADDCGLYV 514
           RAG LE AL +V+SMPMKPN  + G+LL AC NH  N+ LAE +++ L +L       YV
Sbjct: 355 RAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYV 414

Query: 515 LLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELEL 574
           +LSN+YA  G WE A ++R+ M+   +KK+ G S IEID  +  F++G+   V++  +  
Sbjct: 415 ILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDCMHVFMAGDNAHVETTYIRE 474

Query: 575 VIQ 577
           V++
Sbjct: 475 VLE 477



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 179/362 (49%), Gaps = 45/362 (12%)

Query: 70  NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV 129
           NQ     T    + I   T++    +A   + +M   G+  ++ T+  +L  CG      
Sbjct: 29  NQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGS 88

Query: 130 E--GTEIHGEVVKMGFLCD-VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
           E  G  +HG   K+G   + V V   +IGMYSK G    AR VF+  E K+ V+WN ++ 
Sbjct: 89  EALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMID 148

Query: 187 GFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK----DLI 242
           G++  G++  A ++FD+MP++D ISW+ MI+G+  KKG    A + F  M I     D +
Sbjct: 149 GYMRSGQVDNAAKMFDKMPERDLISWTAMINGF-VKKGYQEEALLWFREMQISGVKPDYV 207

Query: 243 S------------------W-----------------NSMIDGYAKIGDLVAAQQLFNEM 267
           +                  W                 NS+ID Y + G +  A+Q+F  M
Sbjct: 208 AIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNM 267

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG- 326
            +R V SW+ +I G+A +GN  E+L  FR+M  +G +PD ++  GA++AC+ VG ++ G 
Sbjct: 268 EKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGL 327

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGM 385
           ++  +     RI+  +     L+D+Y + G L++A ++  SM  K N +    ++A    
Sbjct: 328 RYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSN 387

Query: 386 NG 387
           +G
Sbjct: 388 HG 389



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 133/317 (41%), Gaps = 49/317 (15%)

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV- 320
           Q  N+       SW+  I+   ++G   EA   F +M   GV P+ I+ +  +S C    
Sbjct: 26  QRHNQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFT 85

Query: 321 -GALDLGKWIHVF--------------------------MKRSRITMDM------IVQTA 347
            G+  LG  +H +                           K++R+  D       +    
Sbjct: 86  SGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNT 145

Query: 348 LIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407
           +ID YM+ G +D A ++F  M ++++IS+  MI G    G+ EEAL  F +M+  G+  D
Sbjct: 146 MIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPD 205

Query: 408 DLIFLGVLIACSHSGLATEG-----YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
            +  +  L AC++ G  + G     Y + Q  K +  +       + L+DL  R G +E 
Sbjct: 206 YVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVS------NSLIDLYCRCGCVEF 259

Query: 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLSNIY 520
           A  +  +M  K  +  W ++++    + N   + V    + E   K D       L+   
Sbjct: 260 ARQVFYNME-KRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTAC- 317

Query: 521 ADAGMWEHALRIRKMMR 537
           +  G+ E  LR  ++M+
Sbjct: 318 SHVGLVEEGLRYFQIMK 334



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 109/236 (46%), Gaps = 11/236 (4%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A ++F+++ + +      MI G+ +    ++AL ++  M+  G+  D       L A
Sbjct: 156 VDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNA 215

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G  +H  V+   F  +V V N LI +Y +CG +  AR VF   E + +VSW
Sbjct: 216 CTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSW 275

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMP 237
           N V+ GF   G   ++   F +M +K    DA++++  +       G +      F+ M 
Sbjct: 276 NSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTAC-SHVGLVEEGLRYFQIMK 334

Query: 238 IKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQHGN 287
               IS     +  ++D Y++ G L  A +L   MP + N      ++   + HGN
Sbjct: 335 CDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGN 390


>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial [Vitis vinifera]
 gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 180/515 (34%), Positives = 280/515 (54%), Gaps = 29/515 (5%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A  LF+++ + +    N+MI G+ Q     + +S +  M  +G+  D+ T   +  +   
Sbjct: 108 AYNLFSRMPKRDVASWNSMILGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALS 167

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE--IKDLVSWN 182
           L  L     IH   +K+G   DV V N  I  Y+KCG  G A +VF+G +  +K  VSWN
Sbjct: 168 LKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTGVSWN 227

Query: 183 LVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDIS-------SARILFEH 235
            ++ G+    +  KA   F +M          +  G+R     I           +LF  
Sbjct: 228 SMIAGYAHFEQCSKAVGFFKKM----------LCGGFRADLSTILSLLSSCVQPEVLFHG 277

Query: 236 MPI----------KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
             I           D+   N++I  Y+K GD+ +A+ LF+ M  +   SW+ MI GYA+ 
Sbjct: 278 KLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGYAEK 337

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
           G+  EA+ LF  M   G +PD+++++  +S C Q GAL+LGKWI  +   + +  +++V 
Sbjct: 338 GDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVC 397

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
            ALID+Y KCGS+D AR +FY+M +K+++S+  +IAG  +NG  +EAL  F QM   G+ 
Sbjct: 398 NALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLK 457

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
            + + FL VL AC+H+G   +G+  F  M +   I P L+HYSC+ DLL R G L++A  
Sbjct: 458 PNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMADLLGRKGRLKEAFE 517

Query: 466 IVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM 525
            +++MP KP++ +W  LL AC+ HQNV + E V   L EL+      YV ++NIYA AG 
Sbjct: 518 FIQNMPFKPDVGIWSVLLSACKIHQNVVIGECVAYHLFELEPQTAVPYVQMANIYASAGK 577

Query: 526 WEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
           W+    IR MM+  K  K  G+S+++++G   EF 
Sbjct: 578 WDRVAAIRTMMKCNKAMKSPGKSLVQVNGKTHEFT 612



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/442 (29%), Positives = 218/442 (49%), Gaps = 17/442 (3%)

Query: 54  LTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNY 113
           +T   T + ++   L+  + Q N+ +  ++ +GY       KAL  +  MK+ GL  +N 
Sbjct: 2   VTPAATQSFNRFSNLWT-VAQWNSSITESVNQGYAH-----KALLLFRQMKQNGLEPNNL 55

Query: 114 TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS 173
           T+P V KAC  L+ L     +H  VVK  F  D+FV   ++ MY KC  +G A ++F   
Sbjct: 56  TFPSVAKACSKLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRM 115

Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARIL- 232
             +D+ SWN ++ GF + G + +   +F EM  +   + S+ + G       +   ++L 
Sbjct: 116 PKRDVASWNSMILGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLE 175

Query: 233 -FEHMPIK-----DLISWNSMIDGYAKIGDLVAAQQLFNEMPE--RNVFSWSIMIDGYAQ 284
                 IK     D+   N+ I  YAK G+   A+ +F+ + +  +   SW+ MI GYA 
Sbjct: 176 SIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAH 235

Query: 285 HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIV 344
                +A+  F++MLC G R D+ +++  +S+C Q   L  GK IH    +     D+ V
Sbjct: 236 FEQCSKAVGFFKKMLCGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQV 295

Query: 345 QTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGI 404
              LI MY KCG +  AR +F +M  K  +S+  MIAG    G  +EA+  F+ ME  G 
Sbjct: 296 INTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGE 355

Query: 405 PKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL 464
             D +  + ++  C  +G A E  +   +     G++  L   + L+D+ ++ G ++ A 
Sbjct: 356 KPDLVTIISLMSGCGQTG-ALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNAR 414

Query: 465 NIVESMPMKPNLALWGTLLLAC 486
            +  +MP K +L  W TL+  C
Sbjct: 415 ELFYTMPEK-SLVSWTTLIAGC 435



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 64/144 (44%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  A  LF+ +          MI GY +  +  +A++ +  M+  G   D  T   ++ 
Sbjct: 308 DIGSARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMS 367

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            CG    L  G  I       G   ++ V N LI +Y+KCG M  AR +F     K LVS
Sbjct: 368 GCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVS 427

Query: 181 WNLVLRGFVECGEMGKAREVFDEM 204
           W  ++ G    GE  +A  +F +M
Sbjct: 428 WTTLIAGCALNGEFKEALGLFFQM 451


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 190/540 (35%), Positives = 300/540 (55%), Gaps = 41/540 (7%)

Query: 84  IRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGF 143
           +R  T+S++ ++A+S Y+ M   G   DN+ +P VLKA   L  L  G +IH   VK G+
Sbjct: 64  LRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGY 123

Query: 144 -LCDVFVVNGLIGMYSKCGHMGC--------------------ARSVFEGSEIKDLVSWN 182
               V V N L+ MY KCG +G                     ++++FE    +D+VSWN
Sbjct: 124 GSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWN 183

Query: 183 LVLRGFVECGEMGKAREVFD----EMPQKDAISWSIMIDG----YRKKKGDISSARILFE 234
            ++  F +     +A   F     E  + D ++ + ++       R   G    A +L  
Sbjct: 184 TMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRN 243

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
           +  I++    ++++D Y     + + +++F+ +  R +  W+ MI GYA++G  ++AL L
Sbjct: 244 NDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALIL 303

Query: 295 FREML-CQGVRPDVISVMGAISACAQ-VGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
           F EM+   G+ P+  ++   + AC   + A+  GK IH +  R+ +  D+ V +AL+DMY
Sbjct: 304 FIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMY 363

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG-----IPKD 407
            KCG L+ +RR+F  M  KNVI++NV+I   GM+G GEEAL+ F  M  E         +
Sbjct: 364 AKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPN 423

Query: 408 DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467
           ++ F+ V  ACSHSGL +EG  +F  MK   G+EP  +HY+C+VDLL RAG+LE+A  +V
Sbjct: 424 EVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELV 483

Query: 468 ESMPMK-PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMW 526
            +MP +   +  W +LL ACR HQNV L EV  + L+ L+ +    YVLLSNIY+ AG+W
Sbjct: 484 NTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLW 543

Query: 527 EHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586
             A+ +RK MR+  +KKE G S IE    + +F++G++   QSE+L      F++T  E+
Sbjct: 544 NKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQL----HGFLETLSEK 599



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 156/326 (47%), Gaps = 22/326 (6%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D ++ LF      +    NTMI  ++QS    +AL+F+  M  +G+ +D  T   VL A
Sbjct: 164 VDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPA 223

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLC-DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           C  L  L  G EIH  V++   L  + FV + L+ MY  C  +   R VF+    + +  
Sbjct: 224 CSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIEL 283

Query: 181 WNLVLRGFVECGEMGKAREVFDEM-------PQKDAISWSIMIDGYRK-----KKGDISS 228
           WN ++ G+   G   KA  +F EM       P    ++ S+M           K  +I +
Sbjct: 284 WNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMA-SVMPACVHSLAAIAKGKEIHA 342

Query: 229 ARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNP 288
             I   +M   D+   ++++D YAK G L  ++++FNEMP +NV +W+++I     HG  
Sbjct: 343 YAI--RNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKG 400

Query: 289 KEALYLFREMLCQGVR-----PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
           +EAL LF+ M+ +  R     P+ ++ +   +AC+  G +  G  +   MK         
Sbjct: 401 EEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTS 460

Query: 344 VQTA-LIDMYMKCGSLDEARRIFYSM 368
              A ++D+  + G L+EA  +  +M
Sbjct: 461 DHYACVVDLLGRAGQLEEAYELVNTM 486



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 124/276 (44%), Gaps = 31/276 (11%)

Query: 35  LTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQ 94
           L  NDLI   F  S L+      N   ++   R+F+ I      + N MI GY ++   +
Sbjct: 241 LRNNDLIENSFVGSALVDMYC--NCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDE 298

Query: 95  KALSFYVNM-KRKGLLVDNYTYPFVLKAC-GVLMGLVEGTEIHGEVVKMGFLCDVFVVNG 152
           KAL  ++ M K  GLL +  T   V+ AC   L  + +G EIH   ++     D+ V + 
Sbjct: 299 KALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSA 358

Query: 153 LIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGK---AREVFDEM----- 204
           L+ MY+KCG +  +R VF     K++++WN+++   + CG  GK   A E+F  M     
Sbjct: 359 LVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLI---MACGMHGKGEEALELFKNMVAEAG 415

Query: 205 ----PQKDAISWSIMIDGYRKKKGDISSARILFEHM-------PIKDLISWNSMIDGYAK 253
                + + +++ I +       G IS    LF  M       P  D   +  ++D   +
Sbjct: 416 RGGEAKPNEVTF-ITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSD--HYACVVDLLGR 472

Query: 254 IGDLVAAQQLFNEMPER--NVFSWSIMIDGYAQHGN 287
            G L  A +L N MP     V +WS ++     H N
Sbjct: 473 AGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQN 508



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 100/237 (42%), Gaps = 22/237 (9%)

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK 327
           P R+  SW   +    +  + +EA+  + EM   G RPD  +    + A + +  L  G+
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 328 WIH-VFMKRSRITMDMIVQTALIDMYMKCGSL--------------------DEARRIFY 366
            IH   +K    +  + V   L++MY KCG +                    D+++ +F 
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE 172

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
           S   ++++S+N MI+    +    EAL  F  M  EG+  D +    VL ACSH      
Sbjct: 173 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDV 232

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
           G  I   + R+  +       S LVD+     ++E    + + + +   + LW  ++
Sbjct: 233 GKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHI-LGRRIELWNAMI 288


>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 531

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 185/577 (32%), Positives = 302/577 (52%), Gaps = 83/577 (14%)

Query: 13  NPLVSLLQISKTT------THILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAE 66
           N  V+ L+I  T       +H   I+  L  ++L    F  +         N  ++  A 
Sbjct: 15  NWFVTSLKIHGTNLKTLKQSHCFMIITGLNRDNLNVAKFIEA-------CSNAGHLRYAY 67

Query: 67  RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV----DNYTYPFVLKAC 122
            +F     PNTY+HNTMIR  +   + + A S  + + RK        D +T+PFVLK  
Sbjct: 68  SVFTHQPFPNTYLHNTMIRALSLV-DERNAHSIAITVYRKFWAFCAKPDTFTFPFVLKIV 126

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
             +  +  G ++HG+ V  GF   V VV GLI MYS C                      
Sbjct: 127 VRVSDVWFGRQVHGQAVVFGFDSSVHVVTGLIQMYSSC---------------------- 164

Query: 183 LVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLI 242
                    G +G AR+VFDE                                M ++D+ 
Sbjct: 165 ---------GGLGDARKVFDE--------------------------------MRVRDVN 183

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMP--ERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
            WN+++ GY K+G++  A+ L   MP   RN  SW+ +I GYA+ G   EA+ +F+ ML 
Sbjct: 184 VWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYARSGRASEAIEVFQRMLM 243

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
           + V PD ++++  +SACA +G+L+LG+ I  ++    +   + +  A+IDMY K G++ +
Sbjct: 244 ENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITK 303

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           A  +F S+ ++NV+++  +I GL  +G G EAL  F +M   G+  +D+ F+ +L ACSH
Sbjct: 304 ALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDRMVKAGVKPNDVTFIAILSACSH 363

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
            G    G R F SM+   GI P +EHY C++DLL RAG+L +A  +++SMP + N A+WG
Sbjct: 364 VGWVDLGNRFFNSMRSKYGINPNIEHYGCMIDLLGRAGKLREAEEVIKSMPFESNAAIWG 423

Query: 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540
           +LL A   H ++ + E  +  L++L+ ++ G Y+LL+N+Y++ G W+ +  +RKMM+   
Sbjct: 424 SLLAASNVHHDIDVGERALYQLIKLEPNNSGNYMLLANLYSNLGRWDESRMMRKMMKGIG 483

Query: 541 IKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           +KK  G S IE++  + +F+SG++   Q E++  ++Q
Sbjct: 484 VKKLAGESSIEVENRVYKFISGDLSHPQVEKIHELLQ 520


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 181/520 (34%), Positives = 289/520 (55%), Gaps = 21/520 (4%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N  +R     S   +++S Y +M R G   D +++PF+LK+C  L   V G ++H  V++
Sbjct: 19  NVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVIR 78

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDL--VSWNLVLRGFVECGEMGKAR 198
            G   + FV+  LI MY KCG +  AR VFE +       V +N ++ G+    ++  A 
Sbjct: 79  GGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAA 138

Query: 199 EVFDEMPQKDAISWSIMIDGY-------------RKKKGDISSARILFEHMPIKDLISWN 245
            +F  M +      S+ I G              R   G+        E      +   N
Sbjct: 139 FMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSE------VAVLN 192

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           S I  Y K G + + ++LF+EMP + + +W+ +I GY+Q+G   + L LF +M   GV P
Sbjct: 193 SFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCP 252

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D  +++  +S+CA +GA  +G+ +   ++ +    ++ +  ALI MY +CG+L +AR +F
Sbjct: 253 DPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVF 312

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
             M  K+++S+  MI   GM+G GE  L  F  M   GI  D  +F+ VL ACSHSGL  
Sbjct: 313 DIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTD 372

Query: 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
           +G  +F++MKR   +EP  EHYSCLVDLL RAG L++A+  ++SMP++P+ A+WG LL A
Sbjct: 373 KGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGA 432

Query: 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
           C+ H+NV +AE+    ++E +  + G YVL+SNIY+D+   E   RIR MMR+R  +K+ 
Sbjct: 433 CKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKP 492

Query: 546 GRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
           G S +E  G +  F++G+    Q+EE+  ++     + +E
Sbjct: 493 GYSYVEHKGKVHLFLAGDRSHEQTEEVHRMLDELETSVME 532



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 165/339 (48%), Gaps = 16/339 (4%)

Query: 42  TEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYM----HNTMIRGYTQSSNPQKAL 97
            EPF L+ L+ S+     L ++ A ++F +   P++      +N +I GYT +S    A 
Sbjct: 83  AEPFVLTALI-SMYCKCGL-VEDARKVFEE--NPHSSQLGVCYNALISGYTANSKVSDAA 138

Query: 98  SFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMY 157
             +  MK  G+ VD+ T   ++  C V   L  G  +HGE VK G   +V V+N  I MY
Sbjct: 139 FMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMY 198

Query: 158 SKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMID 217
            KCG +   R +F+   +K L++WN V+ G+ + G      E+F++M           + 
Sbjct: 199 MKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLV 258

Query: 218 GYRKKKGDISSARILFEHMPI-------KDLISWNSMIDGYAKIGDLVAAQQLFNEMPER 270
                   + + +I  E   +        ++   N++I  YA+ G+L  A+ +F+ MP +
Sbjct: 259 SVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVK 318

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           ++ SW+ MI  Y  HG  +  L LF +M+ +G+RPD    +  +SAC+  G  D G  + 
Sbjct: 319 SLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELF 378

Query: 331 VFMKRS-RITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
             MKR  ++       + L+D+  + G LDEA     SM
Sbjct: 379 RAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSM 417



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 99/215 (46%), Gaps = 10/215 (4%)

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
           SW++ +   A      E++ L+R ML  G  PD  S    + +CA +     G+ +H  +
Sbjct: 17  SWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 76

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNV--ISYNVMIAGLGMNGFGEE 391
            R     +  V TALI MY KCG +++AR++F      +   + YN +I+G   N    +
Sbjct: 77  IRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSD 136

Query: 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC---GIEPKLEHYS 448
           A   F +M+  G+  D +  LG++  C+      E   + +S+   C   G   ++   +
Sbjct: 137 AAFMFRRMKETGVSVDSVTILGLVPLCT----VPEYLWLGRSLHGECVKGGTYSEVAVLN 192

Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             + +  + G +E    + + MP+K  L  W  ++
Sbjct: 193 SFITMYMKCGSVESGRRLFDEMPVK-GLITWNAVI 226


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 151/342 (44%), Positives = 229/342 (66%), Gaps = 1/342 (0%)

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           LF+ MP   ++S  +M+  YA +G L  A++LF+ +P ++   W+ MIDGY QHG P EA
Sbjct: 176 LFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEA 235

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR-ITMDMIVQTALID 350
           L LFR ML     PD ++V+  +SA AQ+G ++ GKW+H ++K SR + +++ V TAL+D
Sbjct: 236 LQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVD 295

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           MY KCGSL++A  +F+ +  K+++ +N MI G  M+G   +AL+ F Q+  +G+   D+ 
Sbjct: 296 MYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDIT 355

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
           F+G+L ACSHSGL  EG   FQSM+   GI+PK+EHY C+VDLL RAG +E+A ++V+S+
Sbjct: 356 FIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSL 415

Query: 471 PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530
            + P+  +W +LL ACR H+N+ L + + + LV     + G+Y+LLSNIYA  G WE   
Sbjct: 416 TITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGLANSGMYILLSNIYAAVGKWEEVA 475

Query: 531 RIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           R+R MM+   I+KE G S IEID  + EFV+G++    ++E+
Sbjct: 476 RVRSMMKASGIQKEPGCSAIEIDRKVYEFVAGDMSHPCTDEI 517



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 156/348 (44%), Gaps = 43/348 (12%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D +  L  +   P T  + + I  ++        L+   +M  +GLL   +T    L A
Sbjct: 72  LDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPA 131

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C    GL  G  +H    K+    D +V   L+ MY++ G    AR++F+      +VS 
Sbjct: 132 C---RGLSLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSV 188

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK-------------------- 221
             +L  +   G +  AR +FD +P+KD I W+ MIDGY +                    
Sbjct: 189 TAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAE 248

Query: 222 --------------KKGDISSARILFEHMPIKDLISWN-----SMIDGYAKIGDLVAAQQ 262
                         + G + S + L  ++     +  N     +++D Y K G L  A  
Sbjct: 249 PDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVA 308

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F+ +  +++  W+ MI+GYA HG+ ++AL +F ++  QG+ P  I+ +G ++AC+  G 
Sbjct: 309 VFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGL 368

Query: 323 LDLGKWIHVFMKRSR-ITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369
           ++ G+     M+    I   +     ++D+  + G ++EA  +  S+T
Sbjct: 369 VEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLT 416



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 144/342 (42%), Gaps = 39/342 (11%)

Query: 39  DLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALS 98
           D + +P  +S   M     N   +D A RLF+ + + +    N MI GYTQ   P +AL 
Sbjct: 178 DEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQ 237

Query: 99  FYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFL-CDVFVVNGLIGMY 157
            +  M R     D  T   VL A   L  +  G  +H  V     +  +V V   L+ MY
Sbjct: 238 LFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMY 297

Query: 158 SKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMID 217
            KCG +  A +VF G   KD+V WN ++ G+   G+  KA E+F ++  +D   W     
Sbjct: 298 CKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQL--RDQGLW----- 350

Query: 218 GYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-----ERNV 272
                              P    I++  +++  +  G +   +  F  M      +  +
Sbjct: 351 -------------------PTD--ITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKI 389

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
             +  M+D   + G  +EA +L + +    + PD +  +  ++AC     + LG+ I  F
Sbjct: 390 EHYGCMVDLLGRAGLIEEAFHLVQSLT---ITPDAVMWVSLLAACRLHKNMALGQRIADF 446

Query: 333 MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
           +  + +  +  +   L ++Y   G  +E  R+  SM K + I
Sbjct: 447 LVANGLA-NSGMYILLSNIYAAVGKWEEVARV-RSMMKASGI 486



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 113/265 (42%), Gaps = 35/265 (13%)

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
            YA  G L  +  L     +     ++  I  ++  G     L L  +ML +G+ P   +
Sbjct: 65  AYAASGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHT 124

Query: 310 VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY----------------- 352
           +  ++ AC     L LG+ +H +  +  ++ D  V TAL+ MY                 
Sbjct: 125 LSASLPACR---GLSLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMP 181

Query: 353 ----------MKC----GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
                     + C    G+LD+ARR+F  + +K+ I +N MI G   +G   EAL+ F +
Sbjct: 182 DPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRR 241

Query: 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458
           M       D++  + VL A +  G    G  +   +K    ++  +   + LVD+  + G
Sbjct: 242 MLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCG 301

Query: 459 ELEQALNIVESMPMKPNLALWGTLL 483
            LE A+ +   +  K ++ +W  ++
Sbjct: 302 SLEDAVAVFHGIGNK-DIVVWNAMI 325


>gi|255541070|ref|XP_002511599.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548779|gb|EEF50268.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 429

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 158/376 (42%), Positives = 247/376 (65%), Gaps = 4/376 (1%)

Query: 62  MDQAERLF-NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKR-KGLLVDNYTYPFVL 119
           +  A ++F N+ ++ +T++ N+MI+ +       ++ + Y ++++  G L DN+T+  + 
Sbjct: 36  IQHARQVFDNRPHKDDTFLCNSMIKAHVGMRQFYESFTLYQDLRKGTGFLPDNFTFTALA 95

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           K+CG+ M + EG EIH  V+KMGF  D++V   L+ MY+K G +  AR +F+    + +V
Sbjct: 96  KSCGLNMAVWEGFEIHNHVLKMGFGLDLYVSTALVDMYAKFGELCMARKMFDEMAERGVV 155

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239
           SW  ++ G +  G+MG AR +FD+MP+KD+ +++ M+DGY  K GD+ SA+ LF+ MP +
Sbjct: 156 SWTALIGGCMRSGDMGNARILFDQMPEKDSAAYNAMLDGY-VKAGDMESAQSLFDKMPAR 214

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           ++ISW SMI GY   GD++ A+ LF+ MPERN+FSW+ MI GY+Q+    EAL LF EM 
Sbjct: 215 NVISWTSMIYGYCSGGDVLTARSLFDAMPERNLFSWNAMIGGYSQNNKSHEALKLFHEMQ 274

Query: 300 CQGV-RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
            + +  PD ++V+  + A A +GALDLG WIH F +  +I   + V TAL+DMY KCG +
Sbjct: 275 SRTLFEPDKVTVVSVLPAIADLGALDLGSWIHQFARLKKIDRSINVCTALVDMYAKCGEM 334

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
            +ARR+F SM KK   S+N +I G  +NG  +EAL  F++M+ EG+  +D+  + VL AC
Sbjct: 335 LKARRVFDSMPKKEEASWNALINGFAVNGCADEALTAFSEMKREGVKPNDVTMISVLSAC 394

Query: 419 SHSGLATEGYRIFQSM 434
           +H GL  EG R F++M
Sbjct: 395 NHGGLVEEGKRWFKAM 410



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 60/205 (29%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +M  A  LF+Q+ + ++  +N M+ GY ++ + + A S +  M  +           V+ 
Sbjct: 169 DMGNARILFDQMPEKDSAAYNAMLDGYVKAGDMESAQSLFDKMPARN----------VIS 218

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCD------VFVVNGLIGMYS---------KCGHMGC 165
              ++ G   G    G+V+    L D      +F  N +IG YS         K  H   
Sbjct: 219 WTSMIYGYCSG----GDVLTARSLFDAMPERNLFSWNAMIGGYSQNNKSHEALKLFHEMQ 274

Query: 166 ARSVFEGSEIK--------------DLVSW-----------------NLVLRGFVECGEM 194
           +R++FE  ++               DL SW                   ++  + +CGEM
Sbjct: 275 SRTLFEPDKVTVVSVLPAIADLGALDLGSWIHQFARLKKIDRSINVCTALVDMYAKCGEM 334

Query: 195 GKAREVFDEMPQKDAISWSIMIDGY 219
            KAR VFD MP+K+  SW+ +I+G+
Sbjct: 335 LKARRVFDSMPKKEEASWNALINGF 359


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 152/341 (44%), Positives = 222/341 (65%)

Query: 224 GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
           G ++   +L       D  ++N++I  YA+ G L  A+ LF+EMP RN  SWS M++GY 
Sbjct: 126 GSLADGLLLLRTAAAVDASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYV 185

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
           Q G+ +EAL +F  M  + VRPD   ++G ++ACAQ GAL+ GKW+H ++K   I +++ 
Sbjct: 186 QAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLF 245

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
             TAL+DMY KCG +  A  +F  M  KNV+++  MI GL M+G G EA+  FAQME+ G
Sbjct: 246 FGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSG 305

Query: 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
           I  DD+ F+GVL AC+H+GL  +G  +F SM R  GI+PK+EHY C+VDLL+R G L +A
Sbjct: 306 IRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEA 365

Query: 464 LNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA 523
             +++ MPM+P+  +WG L+  CR H+NV  AE V +  + L+ D  G YVLLSNIYA +
Sbjct: 366 KEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAAS 425

Query: 524 GMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEI 564
           G    A  IR +MR++ + K  G S +E++G I +F+ G++
Sbjct: 426 GRHASAREIRHLMREKGVDKTPGCSTVEVNGVIHQFIVGDL 466



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 160/350 (45%), Gaps = 47/350 (13%)

Query: 79  MHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG----VLMGLVEGTEI 134
           +H+ +IR  ++S+ P  AL  Y ++ R GLL   +T P +LK+      V    V    +
Sbjct: 39  LHDALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAVPGAAVLALTV 98

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSK-CGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           H   VK+G    V V N LI +++   G +     +   +   D  ++N ++  +   G 
Sbjct: 99  HTHAVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAYARAGR 158

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKD------------- 240
           +  AR +FDEMP ++A+SWS M++GY  + GD   A  +F  M  +D             
Sbjct: 159 LADARALFDEMPARNAVSWSAMVNGY-VQAGDGREALRIFARMQAEDVRPDDTVLVGVLA 217

Query: 241 --------------------------LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
                                     L    +++D Y+K G++  A  +F  M  +NV +
Sbjct: 218 ACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLA 277

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W+ MI G A HG   EA+ LF +M   G+RPD I+ +G + AC   G +D G+ +   M 
Sbjct: 278 WTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMV 337

Query: 335 RSRITMDMIVQTA-LIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAG 382
           R       I     ++D+  + G L EA+ +   M  + + + +  ++AG
Sbjct: 338 RKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAG 387



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 121/256 (47%), Gaps = 13/256 (5%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            +  A  LF+++   N    + M+ GY Q+ + ++AL  +  M+ + +  D+     VL 
Sbjct: 158 RLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLA 217

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC     L +G  +HG +   G   ++F    L+ MYSKCG +  A  VFE  + K++++
Sbjct: 218 ACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLA 277

Query: 181 WNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           W  +++G    G   +A  +F +M     + D I++ I +       G +   R LF+ M
Sbjct: 278 WTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAF-IGVLCACTHAGLVDKGRELFDSM 336

Query: 237 PIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKE 290
             K  I      +  M+D  A+ G L  A+++  +MP E +   W  ++ G   H N + 
Sbjct: 337 VRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNVEF 396

Query: 291 ALYLFREMLCQGVRPD 306
           A Y+ +  +   + PD
Sbjct: 397 AEYVAKHWIL--LEPD 410


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 182/520 (35%), Positives = 288/520 (55%), Gaps = 21/520 (4%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N  +R     S   +++S Y +M R G   D +++PF+LK+C  L   V G ++H  V K
Sbjct: 22  NVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTK 81

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS--WNLVLRGFVECGEMGKAR 198
            G   + FV+  LI MY KCG +  AR VFE +     +S  +N ++ G+    ++  A 
Sbjct: 82  GGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAA 141

Query: 199 EVFDEMPQKDAISWSIMIDGY-------------RKKKGDISSARILFEHMPIKDLISWN 245
            +F  M +      S+ + G              R   G      +  E      +   N
Sbjct: 142 YMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSE------VAVLN 195

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           S I  Y K G + A ++LF+EMP + + +W+ +I GY+Q+G   + L L+ +M   GV P
Sbjct: 196 SFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCP 255

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D  +++  +S+CA +GA  +G  +   ++ +    ++ V  A I MY +CG+L +AR +F
Sbjct: 256 DPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVF 315

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
             M  K+++S+  MI   GM+G GE  L  F  M   GI  D  +F+ VL ACSHSGL  
Sbjct: 316 DIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTD 375

Query: 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
           +G  +F++MKR   +EP  EHYSCLVDLL RAG L++A+  +ESMP++P+ A+WG LL A
Sbjct: 376 KGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGA 435

Query: 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
           C+ H+NV +AE+    ++E + ++ G YVL+SNIY+D+   E   RIR MMR+R  +K+ 
Sbjct: 436 CKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKP 495

Query: 546 GRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
           G S +E  G +  F++G+    Q+EE+  ++     + +E
Sbjct: 496 GYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVME 535



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 169/349 (48%), Gaps = 12/349 (3%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPN--TYMHNTMIRGY 87
           Q+   +T     TEPF L+ L+ S+     L  D A ++F +  Q +  +  +N +I GY
Sbjct: 74  QLHCHVTKGGCETEPFVLTALI-SMYCKCGLVAD-ARKVFEENPQSSQLSVCYNALISGY 131

Query: 88  TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV 147
           T +S    A   +  MK  G+ VD+ T   ++  C V   L  G  +HG+ VK G   +V
Sbjct: 132 TANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEV 191

Query: 148 FVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK 207
            V+N  I MY KCG +   R +F+   +K L++WN V+ G+ + G      E++++M   
Sbjct: 192 AVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSS 251

Query: 208 DAISWSIMIDGYRKKKGDISSARILFE-------HMPIKDLISWNSMIDGYAKIGDLVAA 260
                   +         + + +I  E       +  + ++   N+ I  YA+ G+L  A
Sbjct: 252 GVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKA 311

Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
           + +F+ MP +++ SW+ MI  Y  HG  +  L LF +M+ +G+RPD    +  +SAC+  
Sbjct: 312 RAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHS 371

Query: 321 GALDLGKWIHVFMKRS-RITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           G  D G  +   MKR  ++       + L+D+  + G LDEA     SM
Sbjct: 372 GLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESM 420



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 101/214 (47%), Gaps = 10/214 (4%)

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W++ +   A      E++ L+R ML  G  PD  S    + +CA +     G+ +H  + 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS--YNVMIAGLGMNGFGEEA 392
           +     +  V TALI MY KCG + +AR++F    + + +S  YN +I+G   N    +A
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC---GIEPKLEHYSC 449
              F +M+  G+  D +  LG++  C+      E   + +S+   C   G++ ++   + 
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCT----VPEYLWLGRSLHGQCVKGGLDSEVAVLNS 196

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
            + +  + G +E    + + MP+K  L  W  ++
Sbjct: 197 FITMYMKCGSVEAGRRLFDEMPVK-GLITWNAVI 229


>gi|242048094|ref|XP_002461793.1| hypothetical protein SORBIDRAFT_02g008110 [Sorghum bicolor]
 gi|241925170|gb|EER98314.1| hypothetical protein SORBIDRAFT_02g008110 [Sorghum bicolor]
          Length = 601

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 202/621 (32%), Positives = 314/621 (50%), Gaps = 82/621 (13%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL---NMDQAER 67
           ++  L+ +L+  K+  H+LQ  AQL    L   P  L  L+ +  S  +    +   A  
Sbjct: 1   MEQELLQILRGLKSPRHLLQTHAQLLARGLCASPRLLPALVSAAFSVASSSPRHAAAAAI 60

Query: 68  LFNQIYQPNTYMHNTMIR-------GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           L       +T  HN  I        G  +  +   A + Y  M+  G+  + +T+ F+L+
Sbjct: 61  LRAAGAGASTVAHNIFIERLVGRGGGGGRGCSAADAFAAYTAMRAAGVSPNGFTFTFLLR 120

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH---MGCARSVFEGSEIKD 177
           AC  L  L     +HG++V+ GF  DV V N L+ +Y KCG    +G AR VF+G   +D
Sbjct: 121 ACESLRRLPLCRCVHGQIVRCGFGSDVVVQNALLNVYYKCGDPGDVGVARKVFDGMADRD 180

Query: 178 LVSWN-------------------------------LVLRGFVECGEMGKAREVFDEMPQ 206
           +VSWN                                ++  F   G+M  A  VFD MP 
Sbjct: 181 VVSWNSIVGVYMSSGDTTGAMELFEAIPERNVVSWNTIVAAFTRAGDMVSAHAVFDRMPI 240

Query: 207 KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNE 266
           +DAISW++MI GY    G++ SAR LF+ M  KD++SW +M+  YAKIGDL +A+ LF++
Sbjct: 241 RDAISWNLMISGY-AGSGNVESARTLFDLMDRKDVVSWTAMVSAYAKIGDLDSARVLFDQ 299

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDL 325
           MP++N+ SW+ MI GY  +    EAL  F++M+ +G   PD  +++  +SACAQ+G+++ 
Sbjct: 300 MPDKNLVSWNAMITGYNHNSRYDEALRTFQQMMLEGRFMPDEATLVSVVSACAQLGSVEY 359

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
             WI  ++ +S   + + +  ALIDM+ KCG +  AR  F  M  + VI++  MI+G   
Sbjct: 360 CNWISSYISKSNTHITVALGNALIDMFAKCGDVGRARLAFDKMKTRCVITWTTMISGFAY 419

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           NG   EAL  ++ +  EG+  DD IF+  L AC+H GL  EG+ IF+ M  H GI P++E
Sbjct: 420 NGQFREALLIYSDICREGVTLDDTIFIAALAACAHGGLLQEGWSIFKQMVEHYGIVPRME 479

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
           HY C+VDLL RA                                    L E V   +VE+
Sbjct: 480 HYGCIVDLLGRA-----------------------------------ELTEYVSARVVEI 504

Query: 506 KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEI- 564
           +  +    VL+SN  A  G W   +  RK +R R ++K  G S+I++   + EF++ +  
Sbjct: 505 EPFNSSYQVLVSNCSALEGRWGSVMDARKTLRDRGVEKTPGSSLIQVGNEVHEFLAKDTR 564

Query: 565 FDVQSEELELVIQSFVKTTIE 585
              + E+++ V+    + TI+
Sbjct: 565 HKKRKEKMDCVLFKIDEATID 585


>gi|2828294|emb|CAA16708.1| putatative protein [Arabidopsis thaliana]
 gi|7268714|emb|CAB78921.1| putatative protein [Arabidopsis thaliana]
          Length = 1260

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 187/525 (35%), Positives = 288/525 (54%), Gaps = 20/525 (3%)

Query: 61   NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            ++D A ++F ++ + +    N M+ G+ QS +  KA S +  M+   +  D+ T   +++
Sbjct: 708  SVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQ 767

Query: 121  ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD--L 178
            +      L     +H   +++G    V V N  I  Y KCG +  A+ VFE  +  D  +
Sbjct: 768  SASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTV 827

Query: 179  VSWNLVLRGFVECGEMGKA--------REVFDEMPQKDAISWSIMIDGYRKKKGDISSAR 230
            VSWN + + +   GE   A        RE F     K  +S  I +    +    ++  R
Sbjct: 828  VSWNSMFKAYSVFGEAFDAFGLYCLMLREEF-----KPDLSTFINLAASCQNPETLTQGR 882

Query: 231  ILFEHM----PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
            ++  H       +D+ + N+ I  Y+K  D  +A+ LF+ M  R   SW++MI GYA+ G
Sbjct: 883  LIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKG 942

Query: 287  NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD-MIVQ 345
            +  EAL LF  M+  G +PD+++++  IS C + G+L+ GKWI           D +++ 
Sbjct: 943  DMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMIC 1002

Query: 346  TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
             ALIDMY KCGS+ EAR IF +  +K V+++  MIAG  +NG   EALK F++M      
Sbjct: 1003 NALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYK 1062

Query: 406  KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
             + + FL VL AC+HSG   +G+  F  MK+   I P L+HYSC+VDLL R G+LE+AL 
Sbjct: 1063 PNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALE 1122

Query: 466  IVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM 525
            ++ +M  KP+  +WG LL AC+ H+NV +AE   E L  L+      YV ++NIYA AGM
Sbjct: 1123 LIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAGM 1182

Query: 526  WEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570
            W+   RIR +M++R IKK  G SVI+++G    F  GE   V++E
Sbjct: 1183 WDGFARIRSIMKQRNIKKYPGESVIQVNGKNHSFTVGEHGHVENE 1227



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 114/422 (27%), Positives = 186/422 (44%), Gaps = 30/422 (7%)

Query: 81   NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
            N  IR     ++P ++L  +  MKR G   +N+T+PFV KAC  L  +     +H  ++K
Sbjct: 627  NLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLIK 686

Query: 141  MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
              F  DVFV    + M+ KC  +  A  VFE    +D  +WN +L GF + G   KA  +
Sbjct: 687  SPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSL 746

Query: 201  FDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-------DLISWNSMIDGYAK 253
            F EM   +    S+ +    +      S ++L     +         +   N+ I  Y K
Sbjct: 747  FREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGK 806

Query: 254  IGDLVAAQQLFN--EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
             GDL +A+ +F   +  +R V SW+ M   Y+  G   +A  L+  ML +  +PD+ + +
Sbjct: 807  CGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFI 866

Query: 312  GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
               ++C     L  G+ IH          D+      I MY K      AR +F  MT +
Sbjct: 867  NLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSR 926

Query: 372  NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
              +S+ VMI+G    G  +EAL  F  M   G   D +  L ++  C            F
Sbjct: 927  TCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGK----------F 976

Query: 432  QSMKRHCGIEPKLEHYSC----------LVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
             S++    I+ + + Y C          L+D+ S+ G + +A +I ++ P K  +  W T
Sbjct: 977  GSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEK-TVVTWTT 1035

Query: 482  LL 483
            ++
Sbjct: 1036 MI 1037



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 79/149 (53%)

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           +V +W++ I       +P E+L LFREM   G  P+  +      ACA++  +   + +H
Sbjct: 622 SVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVH 681

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
             + +S    D+ V TA +DM++KC S+D A ++F  M +++  ++N M++G   +G  +
Sbjct: 682 AHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTD 741

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACS 419
           +A   F +M    I  D +  + ++ + S
Sbjct: 742 KAFSLFREMRLNEITPDSVTVMTLIQSAS 770


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 184/589 (31%), Positives = 300/589 (50%), Gaps = 81/589 (13%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           ++RLF++I + N    N +   Y Q     +A+  +  M   G+  + ++   ++ AC  
Sbjct: 211 SKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTG 270

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L     G  IHG ++K+G+  D F  N L+ MY+K G +  A SVFE  +  D+VSWN V
Sbjct: 271 LRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAV 330

Query: 185 LRG-------------------------------------------FVECGEMGKAREVF 201
           + G                                           + +C  +  AR  F
Sbjct: 331 IAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAF 390

Query: 202 DEMPQKDAISWSIMIDGYRKKKGDISSARILFE--------------------------- 234
           + +P+KD I+W+ +I GY +   D+ +  +  E                           
Sbjct: 391 NLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVH 450

Query: 235 ------HMPIK-----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
                  + +K     D+   NS+ID Y K   +  A+++F E    ++ S++ MI  YA
Sbjct: 451 VCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYA 510

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
           Q+G  +EAL LF EM    ++PD       ++ACA + A + GK +HV + +    +D+ 
Sbjct: 511 QYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIF 570

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
              +L++MY KCGS+D+A R F  +T++ ++S++ MI GL  +G G +AL+ F QM  EG
Sbjct: 571 AGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEG 630

Query: 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
           +  + +  + VL AC+H+GL TE    F+SM+   G +P  EHY+C++DLL RAG++ +A
Sbjct: 631 VSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEA 690

Query: 464 LNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA 523
           + +V  MP + N ++WG LL A R H++V L     E L  L+ +  G +VLL+NIYA A
Sbjct: 691 VELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASA 750

Query: 524 GMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           G WE+   +R++MR  K+KKE G S IE+   +  F+ G+    +S+E+
Sbjct: 751 GKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEI 799



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 152/606 (25%), Positives = 263/606 (43%), Gaps = 118/606 (19%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           L+S    +K+    LQI A +T + L  +P ++   L++L S        A +L ++  +
Sbjct: 62  LLSQCCTTKSLRPGLQIHAHITKSGLSDDP-SIRNHLINLYS-KCRXFGYARKLVDESSE 119

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           P+    + +I GY Q+     AL  +  M   G+  + +T+  VLKAC ++  L  G ++
Sbjct: 120 PDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQV 179

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           HG VV  GF  DVFV N L+ MY+KC     ++ +F+    +++VSWN +   +V+    
Sbjct: 180 HGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFC 239

Query: 195 GKAREVFDEM------PQK---------------------------------DAISWSIM 215
           G+A  +F EM      P +                                 D  S + +
Sbjct: 240 GEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANAL 299

Query: 216 IDGYRKKKGDISSARILFEHMPIKDLISWNSMIDG------------------------- 250
           +D Y  K GD++ A  +FE +   D++SWN++I G                         
Sbjct: 300 VDMY-AKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSL 358

Query: 251 ------------------YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
                             Y+K   L  A+  FN +PE+++ +W+ +I GY+Q+    EAL
Sbjct: 359 MKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEAL 418

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            LF EM  +G+  +  ++   + + A +  + + + +H    +S    D+ V  +LID Y
Sbjct: 419 SLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSY 478

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KC  +++A RIF   T  +++S+  MI      G GEEALK F +M+   +  D  +  
Sbjct: 479 GKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCS 538

Query: 413 GVLIACSHSGLATEGYRI------------------FQSMKRHCG------------IEP 442
            +L AC++     +G ++                    +M   CG             E 
Sbjct: 539 SLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTER 598

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESM---PMKPNLALWGTLLLACRNHQNVTLAEVVV 499
            +  +S ++  L++ G   QAL +   M    + PN     ++L AC +   VT A++  
Sbjct: 599 GIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYF 658

Query: 500 EGLVEL 505
           E + EL
Sbjct: 659 ESMEEL 664



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 157/321 (48%), Gaps = 10/321 (3%)

Query: 90  SSNPQKALSFYVNMKRKG-LLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF 148
           S +PQ   +  +N+  KG     + +Y  +L  C     L  G +IH  + K G   D  
Sbjct: 35  SEDPQT--TAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPS 92

Query: 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKD 208
           + N LI +YSKC   G AR + + S   DLVSW+ ++ G+ + G  G A   F EM    
Sbjct: 93  IRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLG 152

Query: 209 AISWSIMIDGYRKKKGDISSARILFEHMPI-------KDLISWNSMIDGYAKIGDLVAAQ 261
                       K    +   RI  +   +        D+   N+++  YAK  + + ++
Sbjct: 153 VKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSK 212

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
           +LF+E+PERNV SW+ +   Y Q     EA+ LF EM+  G++P+  S+   ++AC  + 
Sbjct: 213 RLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLR 272

Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
               GK IH ++ +     D     AL+DMY K G L +A  +F  + + +++S+N +IA
Sbjct: 273 DSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIA 332

Query: 382 GLGMNGFGEEALKCFAQMETE 402
           G  ++   E+AL+   QM+ +
Sbjct: 333 GCVLHEHHEQALELLGQMKRQ 353



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 60/115 (52%)

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           P  +S    +S C    +L  G  IH  + +S ++ D  ++  LI++Y KC     AR++
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKL 113

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
               ++ +++S++ +I+G   NG G  AL  F +M   G+  ++  F  VL ACS
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168


>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
          Length = 1974

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 173/515 (33%), Positives = 281/515 (54%), Gaps = 32/515 (6%)

Query: 62   MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
            ++ AE +F+++ + +    N +I  Y Q     KAL+    M+ + L  D+ T   +L A
Sbjct: 1429 IEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSA 1488

Query: 122  CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
              V   +  G E H   ++     DV V N +I MY+KC  +  AR VF+ +  +DLV W
Sbjct: 1489 SAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLW 1548

Query: 182  NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
            N +L  + + G  G+A ++F +M                            F+ +P  ++
Sbjct: 1549 NTLLAAYAQVGLSGEALKLFYQMQ---------------------------FDSVP-PNV 1580

Query: 242  ISWNSMIDGYAKIGDLVAAQQLFNEMP----ERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
            ISWNS+I G+ + G +  A+ +F++M     + N+ +W+ +I G AQ G   EA+  F++
Sbjct: 1581 ISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQK 1640

Query: 298  MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
            M   G+RP + S+   + AC  + +L  G+ IH F+ R    + + V T+L+DMY KCGS
Sbjct: 1641 MQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMYAKCGS 1700

Query: 358  LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
            +DEA+++F+ M+ K +  YN MI+   ++G   EAL  F  ++ EGI  D + F  +L A
Sbjct: 1701 IDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSA 1760

Query: 418  CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
            CSH+GL  EG  +F  M     + P +EHY C+V LLSR G L++AL ++ +MP +P+  
Sbjct: 1761 CSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMPFQPDAH 1820

Query: 478  LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537
            + G+LL ACR H  + L E + + L +L+  + G YV LSN YA AG W     +R +M+
Sbjct: 1821 ILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSNMRDLMK 1880

Query: 538  KRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
             R ++K  G S I+  G +  FV+G+    ++EE+
Sbjct: 1881 VRGLRKNPGCSWIQTGGKLNVFVAGDGSHPKTEEI 1915



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 133/491 (27%), Positives = 261/491 (53%), Gaps = 18/491 (3%)

Query: 65   AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
            A RLF+++   N +    ++    +    + AL  ++ M+  G+  DN+  P VLKACG 
Sbjct: 1230 AVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGS 1289

Query: 125  LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
            L  +  G  +HG V+KMGF   VFV + L+ MY KCG +  AR VF+    K++V+WN +
Sbjct: 1290 LQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSM 1349

Query: 185  LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS--------ARILFEHM 236
            + G+V+ G   +A +VF +M  +      + +  +     ++ +        A  +   +
Sbjct: 1350 IVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSL 1409

Query: 237  PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
             + +++  +S+I+ Y+K+G +  A+ +F+ M E++V +W+++I  Y QH    +AL +  
Sbjct: 1410 DLDNILG-SSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCH 1468

Query: 297  EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
             M  + +R D +++   +SA A    + LGK  H +  R  +  D++V  ++IDMY KC 
Sbjct: 1469 LMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCE 1528

Query: 357  SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
             +D+AR++F S T+++++ +N ++A     G   EALK F QM+ + +P + + +  V++
Sbjct: 1529 RIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVIL 1588

Query: 417  ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP---MK 473
                +G   E   +F  M+   G +P L  ++ L+  L+++G   +A+   + M    ++
Sbjct: 1589 GFLRNGQVNEAKDMFSQMQS-LGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIR 1647

Query: 474  PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC---GLYVLLSNIYADAGMWEHAL 530
            P++A   ++LLAC +  ++      + G +  + + C    +   L ++YA  G  + A 
Sbjct: 1648 PSIASITSVLLACTDIPSLWYGR-AIHGFIT-RHEFCLSVPVATSLVDMYAKCGSIDEAK 1705

Query: 531  RIRKMMRKRKI 541
            ++  MM  +++
Sbjct: 1706 KVFHMMSSKEL 1716



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 106/432 (24%), Positives = 202/432 (46%), Gaps = 41/432 (9%)

Query: 77   TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHG 136
            +Y H+  I    +  + Q+++     M+ +   +    Y  +L+ C     L  G +IH 
Sbjct: 1141 SYFHH--ISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHA 1198

Query: 137  EVVKMG--FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL-----RGFV 189
             ++K G  F  + +V   L+  Y+KC     A  +F    ++++ SW  ++      GF 
Sbjct: 1199 RILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFS 1258

Query: 190  ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDIS--------SARILFEHMPIKDL 241
            E   +G     F EM +      + ++    K  G +            +L         
Sbjct: 1259 EDALLG-----FIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVF 1313

Query: 242  ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
            +S +S++D Y K G L  A+++F+ M E+NV +W+ MI GY Q+G  +EA+ +F +M  +
Sbjct: 1314 VS-SSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVE 1372

Query: 302  GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
            G+ P  ++V   +SA A + AL  GK  H     + + +D I+ +++I+ Y K G +++A
Sbjct: 1373 GIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDA 1432

Query: 362  RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA---C 418
              +F  M +K+V+++N++I+    +    +AL     M +E +  D +    +L A    
Sbjct: 1433 ELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVT 1492

Query: 419  SHSGLATEGYRIFQSMKRHC-----GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
            S+  L  EG         HC      +E  +   + ++D+ ++   ++ A  + +S   +
Sbjct: 1493 SNIKLGKEG---------HCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTER 1543

Query: 474  PNLALWGTLLLA 485
             +L LW TLL A
Sbjct: 1544 -DLVLWNTLLAA 1554



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 124/247 (50%), Gaps = 12/247 (4%)

Query: 251  YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
            YAK      A +LF+ +  RNVFSW+ ++    + G  ++AL  F EM   GV PD   +
Sbjct: 1221 YAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVL 1280

Query: 311  MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
               + AC  +  + LGK +H ++ +      + V ++L+DMY KCG L++AR++F SM +
Sbjct: 1281 PNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVE 1340

Query: 371  KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR- 429
            KNV+++N MI G   NG  +EA+  F  M  EGI    +     L A ++     EG + 
Sbjct: 1341 KNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQG 1400

Query: 430  ----IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
                I  S+     +       S +++  S+ G +E A  +V S  ++ ++  W  L+ +
Sbjct: 1401 HAIAILNSLDLDNILG------SSIINFYSKVGLIEDA-ELVFSRMLEKDVVTWNLLISS 1453

Query: 486  CRNHQNV 492
               H  V
Sbjct: 1454 YVQHHQV 1460



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 58/105 (55%), Gaps = 3/105 (2%)

Query: 61   NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            ++D+A+++F+ +      ++N MI  Y       +AL+ + +++++G+  D+ T+  +L 
Sbjct: 1700 SIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILS 1759

Query: 121  ACGVLMGLV-EGTEIHGEVVKMGFLCDVFVVNG-LIGMYSKCGHM 163
            AC    GLV EG  +  ++V    +  +    G ++ + S+CG++
Sbjct: 1760 ACS-HAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNL 1803


>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Vitis vinifera]
          Length = 858

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 173/515 (33%), Positives = 281/515 (54%), Gaps = 32/515 (6%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ AE +F+++ + +    N +I  Y Q     KAL+    M+ + L  D+ T   +L A
Sbjct: 334 IEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSA 393

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
             V   +  G E H   ++     DV V N +I MY+KC  +  AR VF+ +  +DLV W
Sbjct: 394 SAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLW 453

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
           N +L  + + G  G+A ++F +M                            F+ +P  ++
Sbjct: 454 NTLLAAYAQVGLSGEALKLFYQMQ---------------------------FDSVP-PNV 485

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMP----ERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
           ISWNS+I G+ + G +  A+ +F++M     + N+ +W+ +I G AQ G   EA+  F++
Sbjct: 486 ISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQK 545

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
           M   G+RP + S+   + AC  + +L  G+ IH F+ R    + + V T+L+DMY KCGS
Sbjct: 546 MQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMYAKCGS 605

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
           +DEA+++F+ M+ K +  YN MI+   ++G   EAL  F  ++ EGI  D + F  +L A
Sbjct: 606 IDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSA 665

Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
           CSH+GL  EG  +F  M     + P +EHY C+V LLSR G L++AL ++ +MP +P+  
Sbjct: 666 CSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMPFQPDAH 725

Query: 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537
           + G+LL ACR H  + L E + + L +L+  + G YV LSN YA AG W     +R +M+
Sbjct: 726 ILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSNMRDLMK 785

Query: 538 KRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            R ++K  G S I+  G +  FV+G+    ++EE+
Sbjct: 786 VRGLRKNPGCSWIQTGGKLNVFVAGDGSHPKTEEI 820



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 133/491 (27%), Positives = 261/491 (53%), Gaps = 18/491 (3%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A RLF+++   N +    ++    +    + AL  ++ M+  G+  DN+  P VLKACG 
Sbjct: 135 AVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGS 194

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L  +  G  +HG V+KMGF   VFV + L+ MY KCG +  AR VF+    K++V+WN +
Sbjct: 195 LQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSM 254

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS--------ARILFEHM 236
           + G+V+ G   +A +VF +M  +      + +  +     ++ +        A  +   +
Sbjct: 255 IVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSL 314

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
            + +++  +S+I+ Y+K+G +  A+ +F+ M E++V +W+++I  Y QH    +AL +  
Sbjct: 315 DLDNILG-SSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCH 373

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
            M  + +R D +++   +SA A    + LGK  H +  R  +  D++V  ++IDMY KC 
Sbjct: 374 LMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCE 433

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
            +D+AR++F S T+++++ +N ++A     G   EALK F QM+ + +P + + +  V++
Sbjct: 434 RIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVIL 493

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP---MK 473
               +G   E   +F  M+   G +P L  ++ L+  L+++G   +A+   + M    ++
Sbjct: 494 GFLRNGQVNEAKDMFSQMQS-LGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIR 552

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC---GLYVLLSNIYADAGMWEHAL 530
           P++A   ++LLAC +  ++      + G +  + + C    +   L ++YA  G  + A 
Sbjct: 553 PSIASITSVLLACTDIPSLWYGR-AIHGFIT-RHEFCLSVPVATSLVDMYAKCGSIDEAK 610

Query: 531 RIRKMMRKRKI 541
           ++  MM  +++
Sbjct: 611 KVFHMMSSKEL 621



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/432 (24%), Positives = 202/432 (46%), Gaps = 41/432 (9%)

Query: 77  TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHG 136
           +Y H+  I    +  + Q+++     M+ +   +    Y  +L+ C     L  G +IH 
Sbjct: 46  SYFHH--ISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHA 103

Query: 137 EVVKMG--FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL-----RGFV 189
            ++K G  F  + +V   L+  Y+KC     A  +F    ++++ SW  ++      GF 
Sbjct: 104 RILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFS 163

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDIS--------SARILFEHMPIKDL 241
           E   +G     F EM +      + ++    K  G +            +L         
Sbjct: 164 EDALLG-----FIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVF 218

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
           +S +S++D Y K G L  A+++F+ M E+NV +W+ MI GY Q+G  +EA+ +F +M  +
Sbjct: 219 VS-SSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVE 277

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
           G+ P  ++V   +SA A + AL  GK  H     + + +D I+ +++I+ Y K G +++A
Sbjct: 278 GIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDA 337

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA---C 418
             +F  M +K+V+++N++I+    +    +AL     M +E +  D +    +L A    
Sbjct: 338 ELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVT 397

Query: 419 SHSGLATEGYRIFQSMKRHC-----GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           S+  L  EG         HC      +E  +   + ++D+ ++   ++ A  + +S   +
Sbjct: 398 SNIKLGKEG---------HCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTER 448

Query: 474 PNLALWGTLLLA 485
            +L LW TLL A
Sbjct: 449 -DLVLWNTLLAA 459



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 127/252 (50%), Gaps = 16/252 (6%)

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           YAK      A +LF+ +  RNVFSW+ ++    + G  ++AL  F EM   GV PD   +
Sbjct: 126 YAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVL 185

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
              + AC  +  + LGK +H ++ +      + V ++L+DMY KCG L++AR++F SM +
Sbjct: 186 PNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVE 245

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR- 429
           KNV+++N MI G   NG  +EA+  F  M  EGI    +     L A ++     EG + 
Sbjct: 246 KNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQG 305

Query: 430 ----IFQSMKRHCGIEPKLEHY--SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
               I  S+         L++   S +++  S+ G +E A  +V S  ++ ++  W  L+
Sbjct: 306 HAIAILNSL--------DLDNILGSSIINFYSKVGLIEDA-ELVFSRMLEKDVVTWNLLI 356

Query: 484 LACRNHQNVTLA 495
            +   H  V  A
Sbjct: 357 SSYVQHHQVGKA 368



 Score = 42.0 bits (97), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 22/104 (21%), Positives = 56/104 (53%), Gaps = 1/104 (0%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D+A+++F+ +      ++N MI  Y       +AL+ + +++++G+  D+ T+  +L 
Sbjct: 605 SIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILS 664

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNG-LIGMYSKCGHM 163
           AC     + EG  +  ++V    +  +    G ++ + S+CG++
Sbjct: 665 ACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNL 708


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 178/538 (33%), Positives = 289/538 (53%), Gaps = 11/538 (2%)

Query: 35  LTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQ 94
           +  N    + F  + L+M  +   +L +  A  LF++I   +    +TMIR Y +S    
Sbjct: 150 VVKNGFHGDVFVCNALIMMYSEVGSLAL--ARLLFDKIENKDVVSWSTMIRSYDRSGLLD 207

Query: 95  KALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFL--CDVFVVNG 152
           +AL    +M    +         +      L  L  G  +H  V++ G      V +   
Sbjct: 208 EALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTA 267

Query: 153 LIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISW 212
           LI MY KC ++  AR VF+G     ++SW  ++  ++ C  + +   +F +M  +     
Sbjct: 268 LIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPN 327

Query: 213 SIMIDGYRKKKGDISSARI--LFEHMPIKD-----LISWNSMIDGYAKIGDLVAAQQLFN 265
            I +    K+ G   +  +  L     +++     L+   + ID Y K GD+ +A+ +F+
Sbjct: 328 EITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFD 387

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
               +++  WS MI  YAQ+    EA  +F  M   G+RP+  +++  +  CA+ G+L++
Sbjct: 388 SFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEM 447

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
           GKWIH ++ +  I  DMI++T+ +DMY  CG +D A R+F   T +++  +N MI+G  M
Sbjct: 448 GKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAM 507

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           +G GE AL+ F +ME  G+  +D+ F+G L ACSHSGL  EG R+F  M    G  PK+E
Sbjct: 508 HGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVE 567

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
           HY C+VDLL RAG L++A  +++SMPM+PN+A++G+ L AC+ H+N+ L E   +  + L
Sbjct: 568 HYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSL 627

Query: 506 KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           +    G  VL+SNIYA A  W     IR+ M+   I KE G S IE++G + EF+ G+
Sbjct: 628 EPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGD 685



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 130/444 (29%), Positives = 230/444 (51%), Gaps = 14/444 (3%)

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
           Y  N  +H+ +I  Y +++ P  A   Y  M+     VDN+  P VLKAC ++   + G 
Sbjct: 85  YSSNAAIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQ 144

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           E+HG VVK GF  DVFV N LI MYS+ G +  AR +F+  E KD+VSW+ ++R +   G
Sbjct: 145 EVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSG 204

Query: 193 EMGKAREVFDEM------PQK-DAISWS-IMIDGYRKKKGDISSARILFEHMPIKDLISW 244
            + +A ++  +M      P +   IS + ++ +    K G    A ++      K  +  
Sbjct: 205 LLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPL 264

Query: 245 -NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
             ++ID Y K  +L  A+++F+ + + ++ SW+ MI  Y    N  E + LF +ML +G+
Sbjct: 265 CTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGM 324

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
            P+ I+++  +  C   GAL+LGK +H F  R+  T+ +++ TA IDMY KCG +  AR 
Sbjct: 325 FPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARS 384

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           +F S   K+++ ++ MI+    N   +EA   F  M   GI  ++   + +L+ C+ +G 
Sbjct: 385 VFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGS 444

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
              G  I   + +  GI+  +   +  VD+ +  G+++ A  +      + ++++W  ++
Sbjct: 445 LEMGKWIHSYIDKQ-GIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDR-DISMWNAMI 502

Query: 484 LACRNHQNVTLAEVVVEGLVELKA 507
                H +    E  +E   E++A
Sbjct: 503 SGFAMHGH---GEAALELFEEMEA 523


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 182/521 (34%), Positives = 290/521 (55%), Gaps = 11/521 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +  A  LF+++   +  + N M+ GY ++ +   A   ++ M+R     ++ T+  VL  
Sbjct: 198 IHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSV 257

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVN--GLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           C   + +  G+++HG VV  G   D  V N   LI +Y KC  +  AR +F+     D+V
Sbjct: 258 CASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIV 317

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS---ARILFEHM 236
               ++ G+V  G    A E+F  + Q+   + S+ +         +++    + L  H+
Sbjct: 318 VCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHI 377

Query: 237 PIKD-----LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
            +K+         ++++D YAK G L  A Q F  + +++   W+ MI   +Q+G P+EA
Sbjct: 378 -LKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEA 436

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           + LFR+M   G + D +S+  A+SACA + AL  GK IH FM R     D+  ++ALIDM
Sbjct: 437 IDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDM 496

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y KCG+LD A R+F +M +KN +S+N +IA  G +G  +++L  F  M  +GI  D + F
Sbjct: 497 YSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTF 556

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           L ++ AC H+G   EG   F+ M    GI  ++EHY+C+VDL  RAG L +A  ++ SMP
Sbjct: 557 LAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMP 616

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
             P+  +WGTLL ACR H NV LAEV    L +L   + G YVLLSN++A+AG WE  L+
Sbjct: 617 FSPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLK 676

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           IR +M++R ++K  G S I+++     FV+ +    QS ++
Sbjct: 677 IRSLMKERGVQKVPGCSWIDVNNTTHMFVAADRSHPQSSQI 717



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 153/497 (30%), Positives = 247/497 (49%), Gaps = 26/497 (5%)

Query: 10  SLKNPLVSLLQISKTTTHI---LQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQA 65
           SL   LVS+LQ     + +    Q  AQ+  N +       ++LL M +     L+   A
Sbjct: 44  SLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLD---A 100

Query: 66  ERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVL 125
           + +F Q+    +   N MIRG+T       AL FY  M   G L D YT+P+V+KACG L
Sbjct: 101 KNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGL 160

Query: 126 MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL 185
             +  G  +H ++  MGF  DVFV + LI  YS+ G +  AR +F+    KD V WN++L
Sbjct: 161 NSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVML 220

Query: 186 RGFVECGEMGKAREVFDEM----PQKDAISWS---------IMIDGYRKKKGDISSARIL 232
            G+V+ G+   A  VF EM       ++++++         IMI+   +  G + S+ + 
Sbjct: 221 NGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLE 280

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
            +  P+ +     ++ID Y K  D+  A+++F++    ++   + MI GY  +G    AL
Sbjct: 281 MDS-PVANTF---ALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNAL 336

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            +FR +L + +R + +++   + ACA + AL LGK +H  + ++       V +A++DMY
Sbjct: 337 EIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMY 396

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCG LD A + F  ++ K+ + +N MI     NG  EEA+  F QM   G   D +   
Sbjct: 397 AKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSIS 456

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
             L AC++      G  I   M R       L   S L+D+ S+ G L+ A  + ++M  
Sbjct: 457 AALSACANLPALHYGKEIHAFMMRG-AFRSDLFAESALIDMYSKCGNLDLACRVFDTMEE 515

Query: 473 KPNLALWGTLLLACRNH 489
           K N   W +++ A  NH
Sbjct: 516 K-NEVSWNSIIAAYGNH 531



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 156/328 (47%), Gaps = 32/328 (9%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A ++F+Q    +  +   MI GY  +     AL  +  + ++ +  ++ T   VL 
Sbjct: 300 DVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLP 359

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L  G E+HG ++K G     +V + ++ MY+KCG +  A   F G   KD V 
Sbjct: 360 ACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVC 419

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI-- 238
           WN ++     C + GK  E  D   Q       + + G +     IS+A     ++P   
Sbjct: 420 WNSMI---TSCSQNGKPEEAIDLFRQ-------MGMAGTKYDCVSISAALSACANLPALH 469

Query: 239 ---------------KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
                           DL + +++ID Y+K G+L  A ++F+ M E+N  SW+ +I  Y 
Sbjct: 470 YGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYG 529

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR---ITM 340
            HG  K++L LF  ML  G++PD ++ +  ISAC   G +D G  IH F   +    I  
Sbjct: 530 NHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEG--IHYFRCMTEELGIMA 587

Query: 341 DMIVQTALIDMYMKCGSLDEARRIFYSM 368
            M     ++D++ + G L+EA  +  SM
Sbjct: 588 RMEHYACMVDLFGRAGRLNEAFGMINSM 615



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 125/515 (24%), Positives = 224/515 (43%), Gaps = 35/515 (6%)

Query: 87  YTQSSNPQKALSFYVNMKRKGLLVDNYTYP---FVLKACGVLMGLVEGTEIHGEVVKMGF 143
           +T S N  K L F ++        D+   P    +L+ C    GL +G + H +++  G 
Sbjct: 25  HTNSVNIGKPLQFSIHN-------DDSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGI 77

Query: 144 LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDE 203
             +  +   L+GMY  CG    A+++F    +     WN ++RGF   G+   A   + +
Sbjct: 78  GYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFK 137

Query: 204 M------PQKDAISWSIMIDGYRKKK--GDISSARILFEHMPIKDLISWNSMIDGYAKIG 255
           M      P K    + I   G       G +   +I F    + D+   +S+I  Y++ G
Sbjct: 138 MLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFEL-DVFVGSSLIKFYSENG 196

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
            +  A+ LF+ MP ++   W++M++GY ++G+   A  +F EM      P+ ++    +S
Sbjct: 197 CIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLS 256

Query: 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQT--ALIDMYMKCGSLDEARRIFYSMTKKNV 373
            CA    ++ G  +H  +  S + MD  V    ALID+Y KC  ++ AR+IF   T  ++
Sbjct: 257 VCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDI 316

Query: 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433
           +    MI+G  +NG    AL+ F  +  E +  + +    VL AC+     T G  +   
Sbjct: 317 VVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGH 376

Query: 434 MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT 493
           + ++ G        S ++D+ ++ G L+ A      +  K +   W +++ +C   QN  
Sbjct: 377 ILKN-GHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDK-DAVCWNSMITSCS--QNGK 432

Query: 494 LAEVV----VEGLVELKADDCGLYVLLS---NIYA-DAGMWEHALRIRKMMRKRKIKKET 545
             E +      G+   K D   +   LS   N+ A   G   HA  +R   R     +  
Sbjct: 433 PEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESA 492

Query: 546 GRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFV 580
              +    GN+   ++  +FD   E+ E+   S +
Sbjct: 493 LIDMYSKCGNLD--LACRVFDTMEEKNEVSWNSII 525


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 193/579 (33%), Positives = 300/579 (51%), Gaps = 65/579 (11%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK-GLLVDNYTYPFVL 119
           ++  A ++F+++   +    N++I  Y +   P+ AL  +  M  + G   D+ T   VL
Sbjct: 177 SLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVL 236

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
             C  +     G + HG  V    + ++FV N L+ MY+K G M  A +VF    +KD+V
Sbjct: 237 PPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVV 296

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRK-------------- 221
           SWN ++ G+ + G    A  +F++M ++    D ++WS  I GY +              
Sbjct: 297 SWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQM 356

Query: 222 -----KKGDISSARILFEHMPIKDLISW--------------------------NSMIDG 250
                K  +++   +L     +  L+                            N +ID 
Sbjct: 357 LSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDM 416

Query: 251 YAKIGDLVAAQQLFNEMP--ERNVFSWSIMIDGYAQHGNPKEALYLFREML---CQGVRP 305
           YAK   +  A+ +F+ +   ER+V +W++MI GY+QHG+  +AL L  EM    CQ  RP
Sbjct: 417 YAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQ-TRP 475

Query: 306 DVISVMGAISACAQVGALDLGKWIHVF-MKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           +  ++  A+ ACA + AL +GK IH + ++  +  + + V   LIDMY KCG + +AR +
Sbjct: 476 NAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLV 535

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F +M +KN +++  ++ G GM+G+GEEAL  F +M   G   D +  L VL ACSHSG+ 
Sbjct: 536 FDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMI 595

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            +G   F  MK   G+ P  EHY+CLVDLL RAG L  AL ++E MPM+P   +W  LL 
Sbjct: 596 DQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLS 655

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
            CR H  V L E   + + EL +++ G Y LLSN+YA+AG W+   RIR +MR + IKK 
Sbjct: 656 CCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKR 715

Query: 545 TGRSVIE-IDGNIKEFV-------SGEIFDVQSEELELV 575
            G S +E I G    FV       + EI+ V S+ ++ +
Sbjct: 716 PGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRI 754



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 165/551 (29%), Positives = 268/551 (48%), Gaps = 76/551 (13%)

Query: 3   TLAAAKFSLKNPLVSLLQIS------------KTTTHILQILAQLTTNDLITEPFTLSQL 50
           TL AA  S ++  VSL   S            KT + +  I  +L +  ++T   T S L
Sbjct: 7   TLRAAAKSHQHLKVSLFSTSALEITPPFIHKCKTISQVKLIHQKLLSFGILTLNLT-SHL 65

Query: 51  LMSLTSPNTLNMDQAERLFNQIYQPN---TYMHNTMIRGYTQSSNPQKALSFYVNMKRKG 107
           + +  S   L+   A  L  + + P+    Y  N++IR Y  +    K LS +  M    
Sbjct: 66  ISTYISLGCLS--HAVSLLRR-FPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLS 122

Query: 108 LLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCAR 167
              DNYT+PFV KACG +  +  G   H      GF+ +VFV N L+ MYS+CG +  AR
Sbjct: 123 WTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDAR 182

Query: 168 SVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK-----DAISW---------- 212
            VF+   + D+VSWN ++  + + G+   A E+F +M  +     D I+           
Sbjct: 183 KVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASV 242

Query: 213 -------------------------SIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM 247
                                    + ++D Y  K G +  A  +F +MP+KD++SWN+M
Sbjct: 243 GTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMY-AKFGMMDEANTVFSNMPVKDVVSWNAM 301

Query: 248 IDGYAKIGDLVAAQQLFNEMPER----NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
           + GY++IG    A +LF +M E     +V +WS  I GYAQ G   EAL + R+ML  G+
Sbjct: 302 VAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGI 361

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVF-------MKRSRITMDMIVQTALIDMYMKCG 356
           +P+ ++++  +S CA VGAL  GK IH +       ++++    + +V   LIDMY KC 
Sbjct: 362 KPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCK 421

Query: 357 SLDEARRIFYSMTKK--NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL-- 412
            +D AR +F S++ K  +V+++ VMI G   +G   +AL+  ++M  E        F   
Sbjct: 422 KVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTIS 481

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
             L+AC+     + G +I     R+      L   +CL+D+ ++ G++  A  + ++M M
Sbjct: 482 CALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNM-M 540

Query: 473 KPNLALWGTLL 483
           + N   W +L+
Sbjct: 541 EKNEVTWTSLM 551


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 171/519 (32%), Positives = 286/519 (55%), Gaps = 9/519 (1%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           M  A ++FN    P    HN +I GY +     +AL  + ++++  L  D  +    L A
Sbjct: 322 MVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTA 381

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  + G +EG ++HG  VK G   ++ V N ++ MY+KCG +  A  +F+  EIKD VSW
Sbjct: 382 CSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSW 441

Query: 182 NLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKK----GDISSARILF 233
           N ++    +   + +   +F  M     + D  ++  ++     KK    G     R++ 
Sbjct: 442 NAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIK 501

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
             M + D    +++ID Y K G LV A+++   + ER   SW+ +I G++     + AL 
Sbjct: 502 SGMGL-DWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALS 560

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
            F  ML  GV PD  +    +  CA +  ++LGK IH  + + ++  D+ + + ++DMY 
Sbjct: 561 YFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYS 620

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCG++ ++R +F    K++ ++++ MI     +G GE+A+K F +M+ + +  +  IF+ 
Sbjct: 621 KCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFIS 680

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           VL AC+H G   +G   F+ M+ H G++P++EHYSC+VDLL R+G++ +AL ++ESMP +
Sbjct: 681 VLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNEALELIESMPFE 740

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
            +  +W TLL  CR   NV +AE     L++L   D   YVLLSN+YA AGMW    +IR
Sbjct: 741 ADDVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQDSSAYVLLSNVYAIAGMWGEVAKIR 800

Query: 534 KMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
             M+  K+KKE G S I++   +  F+ G+    +SEE+
Sbjct: 801 SFMKNYKLKKEPGCSWIQVRDEVHAFLVGDKAHPRSEEI 839



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/473 (27%), Positives = 226/473 (47%), Gaps = 47/473 (9%)

Query: 114 TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS 173
           T+  + + C  L  +  G + H ++   GF+  VFV N L+  Y KC ++  A +VF+  
Sbjct: 40  TFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKM 99

Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMI-----DGYRKKKGDISS 228
             +D++SWN ++ G+   G M  A+ +FD MP++D +SW+ M+     +G+ +K  +I +
Sbjct: 100 PQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFT 159

Query: 229 ARILFE---------------------------H-MPIK-----DLISWNSMIDGYAKIG 255
              L E                           H + I+     D+++  +++D Y+   
Sbjct: 160 KMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCK 219

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
            L  A  +F EMPERN   WS +I GY ++    E L L++ ML +G+     +   A  
Sbjct: 220 KLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFR 279

Query: 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS 375
           +CA + A +LG  +H +  ++    D IV TA +DMY KC  + +AR++F +       S
Sbjct: 280 SCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQS 339

Query: 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMK 435
           +N +I G        EAL+ F  ++   +  D++   G L ACS      EG ++   + 
Sbjct: 340 HNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQL-HGLA 398

Query: 436 RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV--T 493
             CG++  +   + ++D+ ++ G L +A  I + M +K  ++ W  ++ A   +++V  T
Sbjct: 399 VKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVS-WNAIIAAHEQNEHVEET 457

Query: 494 LAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           LA  V      ++ DD   Y   S + A AG  + AL     +  R IK   G
Sbjct: 458 LALFVSMLRSTMEPDD---YTFGSVVKACAG--KKALNYGMEVHGRVIKSGMG 505



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 206/432 (47%), Gaps = 13/432 (3%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           NM+ A+ LF+ + + +    N+M+  Y Q+   +K++  +  M+   +  D  T+  VLK
Sbjct: 119 NMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLK 178

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  +     G ++H   ++MGF  DV     L+ MYS C  +  A ++F     ++ V 
Sbjct: 179 ACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVC 238

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKD-AISWSIMIDGYRKKKGDISSARI--LFEHMP 237
           W+ V+ G+V      +  +++  M  +   +S +     +R   G +S+  +        
Sbjct: 239 WSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAG-LSAFELGTQLHAYA 297

Query: 238 IK-----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
           +K     D I   + +D YAK   +V A+++FN  P     S + +I GYA+     EAL
Sbjct: 298 LKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEAL 357

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            +FR +    +  D IS+ GA++AC+ +     G  +H    +  +  ++ V   ++DMY
Sbjct: 358 EIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMY 417

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCG+L EA  IF  M  K+ +S+N +IA    N   EE L  F  M    +  DD  F 
Sbjct: 418 AKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFG 477

Query: 413 GVLIACSHSGLATEGYRIF-QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
            V+ AC+       G  +  + +K   G++  +   S ++D+  + G L +A  I E + 
Sbjct: 478 SVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVG--SAIIDMYCKCGMLVEAEKIHERLE 535

Query: 472 MKPNLALWGTLL 483
            +  ++ W +++
Sbjct: 536 ERTTVS-WNSII 546


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 193/569 (33%), Positives = 293/569 (51%), Gaps = 38/569 (6%)

Query: 8   KFSLKNPLVSLLQI---SKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQ 64
           +F +KN  + LL+    SK+ T   +I      N    +   L +L     S N + +  
Sbjct: 4   RFEVKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVL-- 61

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A RLF++I  P+  + N +IR Y  +     A+  Y +M   G+  + YTYPFVLKAC  
Sbjct: 62  ARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSG 121

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L+ + +G EIH      G   DVFV   L+  Y+KCG                       
Sbjct: 122 LLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCG----------------------- 158

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
                    + +A+ +F  M  +D ++W+ MI G     G    A  L   M  + +   
Sbjct: 159 --------ILVEAQRLFSSMSHRDVVAWNAMIAGC-SLYGLCDDAVQLIMQMQEEGICPN 209

Query: 245 NSMIDGYAKIGD-LVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
           +S I G       L+ A+++F+ M  RN  SWS MI GY      KEAL +FR M   G+
Sbjct: 210 SSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGI 269

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
            PD+ +++G + AC+ + AL  G   H ++       D ++  ALIDMY KCG +  AR 
Sbjct: 270 DPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFARE 329

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           +F  M + +++S+N MI G G++G G EAL  F  +   G+  DD+ F+ +L +CSHSGL
Sbjct: 330 VFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGL 389

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             EG   F +M R   I P++EH  C+VD+L RAG +++A + + +MP +P++ +W  LL
Sbjct: 390 VMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALL 449

Query: 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
            ACR H+N+ L E V + +  L  +  G +VLLSNIY+ AG W+ A  IR   +   +KK
Sbjct: 450 SACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKK 509

Query: 544 ETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
             G S IEI+G +  FV G+   +Q  ++
Sbjct: 510 IPGCSWIEINGIVHAFVGGDQSHLQLSQI 538


>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
 gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
          Length = 572

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 190/543 (34%), Positives = 289/543 (53%), Gaps = 50/543 (9%)

Query: 67  RLFNQIYQPNTYMHNTMIRGY-----TQSSNPQKALSFYVNMKRKGLLVDN-YTYPFVLK 120
           R  +QI  P T  H    R Y       ++ P+  L+    ++R GL        P +L+
Sbjct: 19  RRGHQIPSPPT-THLDPDRAYLATIRAAATTPRLVLAACACLRRTGLPPPGPRALPALLR 77

Query: 121 ACGVLMG---LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           +    +G    V G   H    ++G L D FV   L+G Y+ CG +G AR VF+G  ++D
Sbjct: 78  SAARCVGAGAYVRGA--HALAFRVGSLDDGFVRTALVGAYAACGCVGDARKVFDGMAVRD 135

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDI----------- 226
           +VSW ++L  + +     +A   F +M     +S  +++       G I           
Sbjct: 136 VVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLSDQLILATVLSACGHIRHLRTGKSIHS 195

Query: 227 -------------SSARI--------------LFEHMPIKDLISWNSMIDGYAKIGDLVA 259
                        SSA I              L+  MP KDL+S  +M+ GYA+      
Sbjct: 196 YMLVSDILINAHLSSALINLYASCASMEMAEKLYNGMPRKDLVSSTAMVFGYARNRKFEI 255

Query: 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
           A+ +F+ MPE++V SWS MI GYA    P EAL LF +M   G+RPD ++++  ISACA 
Sbjct: 256 ARYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTMLSVISACAN 315

Query: 320 VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVM 379
           +G+LD  KWIH F+K + +   + +  ALIDM+ KCG ++ A  IF  M +KNVI++  M
Sbjct: 316 LGSLDKAKWIHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIFNEMPQKNVITWTSM 375

Query: 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439
           I    M+G G+ AL  F QM  EG+  +++ FL +L AC H+GL  EG  +F SM +  G
Sbjct: 376 ITAFAMHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGRSLFSSMVQQYG 435

Query: 440 IEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVV 499
           IEPK EHY C+VDLL RA  +++A+N++ESM ++PN+ +WG+LL AC  H ++ L     
Sbjct: 436 IEPKHEHYGCMVDLLGRAKLMQEAVNLIESMHLRPNVPVWGSLLAACWMHGDLKLGAFAA 495

Query: 500 EGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEF 559
           + +++L  +  G  VLLS IY  +     A  +R +M+ + + KETG S ++++    EF
Sbjct: 496 KKILQLDPNHDGASVLLSKIYMKSDNLNDAQEVRDVMKLQGVSKETGLSWMDLNEPFHEF 555

Query: 560 VSG 562
            +G
Sbjct: 556 TAG 558



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 168/363 (46%), Gaps = 40/363 (11%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A ++F+ +   +      M+  Y Q+ N ++AL  +  MK  G+L D      VL ACG 
Sbjct: 124 ARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLSDQLILATVLSACGH 183

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           +  L  G  IH  ++    L +  + + LI +Y+ C  M  A  ++ G   KDLVS   +
Sbjct: 184 IRHLRTGKSIHSYMLVSDILINAHLSSALINLYASCASMEMAEKLYNGMPRKDLVSSTAM 243

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK---------GDISSARILFEH 235
           + G+    +   AR +FD MP+KD +SWS MI GY              D+    I  + 
Sbjct: 244 VFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDE 303

Query: 236 MPIKDLIS------------W-----------------NSMIDGYAKIGDLVAAQQLFNE 266
           + +  +IS            W                 N++ID +AK G +  A  +FNE
Sbjct: 304 VTMLSVISACANLGSLDKAKWIHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIFNE 363

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326
           MP++NV +W+ MI  +A HG+ K AL LF +M  +GV P+ ++ +  + AC   G +  G
Sbjct: 364 MPQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEG 423

Query: 327 KWIHVFM-KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLG 384
           + +   M ++  I         ++D+  +   + EA  +  SM  + NV  +  ++A   
Sbjct: 424 RSLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVNLIESMHLRPNVPVWGSLLAACW 483

Query: 385 MNG 387
           M+G
Sbjct: 484 MHG 486



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 86/361 (23%), Positives = 149/361 (41%), Gaps = 83/361 (22%)

Query: 47  LSQLLMSLTSPNTLNMDQAERLFNQIYQPN---------TYMHN---------------- 81
           LS  L++L + +  +M+ AE+L+N + + +          Y  N                
Sbjct: 208 LSSALINLYA-SCASMEMAEKLYNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEK 266

Query: 82  ------TMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
                  MI GY  S+ P +ALS + +M+  G+  D  T   V+ AC  L  L +   IH
Sbjct: 267 DVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTMLSVISACANLGSLDKAKWIH 326

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
             +   G    + + N LI M++KCG +  A ++F                         
Sbjct: 327 AFIKNNGLNKILHICNALIDMFAKCGGINLALNIF------------------------- 361

Query: 196 KAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL----ISWNSMIDGY 251
                 +EMPQK+ I+W+ MI  +    GD  SA  LFE M  + +    +++ +++   
Sbjct: 362 ------NEMPQKNVITWTSMITAF-AMHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYAC 414

Query: 252 AKIGDLVAAQQLFNEMPERNVFS-----WSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
              G +   + LF+ M ++         +  M+D   +    +EA+ L   M    +RP+
Sbjct: 415 CHAGLVHEGRSLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVNLIESM---HLRPN 471

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA---LIDMYMKCGSLDEARR 363
           V      ++AC   G L LG     F  +  + +D     A   L  +YMK  +L++A+ 
Sbjct: 472 VPVWGSLLAACWMHGDLKLG----AFAAKKILQLDPNHDGASVLLSKIYMKSDNLNDAQE 527

Query: 364 I 364
           +
Sbjct: 528 V 528


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 183/516 (35%), Positives = 286/516 (55%), Gaps = 9/516 (1%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A RLF+ + + +    N MI GY Q+    +A   +  M    +  D+ T+   L     
Sbjct: 302 ARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSE 361

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
              L +G EIH  +++ G   DVF+ + LI +Y KC  +  AR +F+     D+V    +
Sbjct: 362 GATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAM 421

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS---ARILFEHMPIKD- 240
           + G+V  G    A E+F  + Q+   + S+ +         +++    + L  H+ +K+ 
Sbjct: 422 ISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHI-LKNG 480

Query: 241 ----LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
                   ++++D YAK G L  A Q F  + +++   W+ MI   +Q+G P+EA+ LFR
Sbjct: 481 HGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFR 540

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
           +M   G + D +S+  A+SACA + AL  GK IH FM R     D+  ++ALIDMY KCG
Sbjct: 541 QMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCG 600

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
           +LD A R+F +M +KN +S+N +IA  G +G  +++L  F  M  +GI  D + FL ++ 
Sbjct: 601 NLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIIS 660

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
           AC H+G   EG   F+ M    GI  ++EHY+C+VDL  RAG L +A  ++ SMP  P+ 
Sbjct: 661 ACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDA 720

Query: 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
            +WGTLL ACR H NV LAEV    L +L   + G YVLLSN++A+AG WE  L+IR +M
Sbjct: 721 GVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLM 780

Query: 537 RKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           ++R ++K  G S I+++     FV+ +    QS ++
Sbjct: 781 KERGVQKVPGCSWIDVNNTTHMFVAADRSHPQSSQI 816



 Score =  198 bits (504), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 170/596 (28%), Positives = 288/596 (48%), Gaps = 40/596 (6%)

Query: 10  SLKNPLVSLLQISKTTTHI---LQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQA 65
           SL   LVS+LQ     + +    Q  AQ+  N +       ++LL M +     L+   A
Sbjct: 44  SLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLD---A 100

Query: 66  ERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVL 125
           + +F Q+    +   N MIRG+T       AL FY  M   G L D YT+P+V+KACG L
Sbjct: 101 KNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGL 160

Query: 126 MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL 185
             +  G  +H ++  MGF  DVFV + LI  YS+ G +  AR +F+    KD V WN++L
Sbjct: 161 NSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVML 220

Query: 186 RGFVECGEMGKAREVFDEM----PQKDAISWS---------IMIDGYRKKKGDISSARIL 232
            G+V+ G+   A  VF EM       ++++++         IMI+   +  G + S+ + 
Sbjct: 221 NGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLE 280

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
            +  P+      N+++  YAK G L  A++LF+ MP+ ++ +W+ MI GY Q+G   EA 
Sbjct: 281 MDS-PVA-----NTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEAS 334

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            LF EM+   ++PD I+    +   ++   L  GK IH ++ R+ +++D+ +++ALID+Y
Sbjct: 335 CLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIY 394

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KC  ++ AR+IF   T  +++    MI+G  +NG    AL+ F  +  E +  + +   
Sbjct: 395 FKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLA 454

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            VL AC+     T G  +   + ++ G        S ++D+ ++ G L+ A      +  
Sbjct: 455 SVLPACAGLAALTLGKELHGHILKN-GHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISD 513

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVV----VEGLVELKADDCGLYVLLS---NIYA-DAG 524
           K +   W +++ +C   QN    E +      G+   K D   +   LS   N+ A   G
Sbjct: 514 K-DAVCWNSMITSCS--QNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYG 570

Query: 525 MWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFV 580
              HA  +R   R     +     +    GN+   ++  +FD   E+ E+   S +
Sbjct: 571 KEIHAFMMRGAFRSDLFAESALIDMYSKCGNLD--LACRVFDTMEEKNEVSWNSII 624



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 156/328 (47%), Gaps = 32/328 (9%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A ++F+Q    +  +   MI GY  +     AL  +  + ++ +  ++ T   VL 
Sbjct: 399 DVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLP 458

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L  G E+HG ++K G     +V + ++ MY+KCG +  A   F G   KD V 
Sbjct: 459 ACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVC 518

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI-- 238
           WN ++     C + GK  E  D   Q       + + G +     IS+A     ++P   
Sbjct: 519 WNSMI---TSCSQNGKPEEAIDLFRQ-------MGMAGTKYDCVSISAALSACANLPALH 568

Query: 239 ---------------KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
                           DL + +++ID Y+K G+L  A ++F+ M E+N  SW+ +I  Y 
Sbjct: 569 YGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYG 628

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR---ITM 340
            HG  K++L LF  ML  G++PD ++ +  ISAC   G +D G  IH F   +    I  
Sbjct: 629 NHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEG--IHYFRCMTEELGIMA 686

Query: 341 DMIVQTALIDMYMKCGSLDEARRIFYSM 368
            M     ++D++ + G L+EA  +  SM
Sbjct: 687 RMEHYACMVDLFGRAGRLNEAFGMINSM 714



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 109/235 (46%), Gaps = 9/235 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A + F  I   +    N+MI   +Q+  P++A+  +  M   G   D  +    L A
Sbjct: 501 LDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSA 560

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G EIH  +++  F  D+F  + LI MYSKCG++  A  VF+  E K+ VSW
Sbjct: 561 CANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSW 620

Query: 182 NLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMID--GYRKKKGD-ISSARILFE 234
           N ++  +   G +  +  +F  M     Q D +++  +I   G+  +  + I   R + E
Sbjct: 621 NSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTE 680

Query: 235 HMPI-KDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
            + I   +  +  M+D + + G L  A  + N MP   +   W  ++     HGN
Sbjct: 681 ELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGN 735


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 175/511 (34%), Positives = 288/511 (56%), Gaps = 28/511 (5%)

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           +FN++ + +T   N++I G + +    +A+  ++ M  +G  +D+ T   VL AC     
Sbjct: 474 VFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRY 533

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
              G  +HG  VK G + +  + N L+ MYS C        +F     K++VSW  ++  
Sbjct: 534 WFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITS 593

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILF------------EH 235
           ++  G   K   +  EM          ++DG R     ++SA   F              
Sbjct: 594 YMRAGLFDKVAGLLQEM----------VLDGIRPDVFAVTSALHAFAGDESLKQGKSVHG 643

Query: 236 MPIKD-----LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
             I++     L   N++++ Y K  ++  A+ +F+ +  ++V SW+ +I GY+++  P E
Sbjct: 644 YTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNE 703

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
           +  LF +ML Q  RP+ +++   + A A + +L+ G+ IH +  R     D     AL+D
Sbjct: 704 SFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVD 762

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           MY+KCG+L  AR +F  +TKKN+IS+ +MIAG GM+GFG+ A+  F QM   GI  D   
Sbjct: 763 MYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAAS 822

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
           F  +L AC HSGLA EG R F++M++   IEPKL+HY+C+VDLLSR G+L++AL  +ESM
Sbjct: 823 FSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESM 882

Query: 471 PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530
           P++P+ ++W +LL  CR H+NV LAE V + + +L+ ++ G YVLL+NIYA+A  WE   
Sbjct: 883 PIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAEAERWEAVK 942

Query: 531 RIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
           +++  +  R +++ TG S IE+   +  F++
Sbjct: 943 KLKNKIGGRGLRENTGYSWIEVRSKVHVFIA 973



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 196/423 (46%), Gaps = 24/423 (5%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
            +++  Y ++ + Q+A+S +  M+  G+  D +    VLK    L  L EG  IHG + K
Sbjct: 173 TSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEK 232

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
           +G      V N LI +YS+CG M  A  VF+    +D +SWN ++ G    G  G A ++
Sbjct: 233 LGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDL 292

Query: 201 FDEM----------------PQKDAISWSIM---IDGYRKKKGDISSARILFEHMPIKDL 241
           F +M                P    + + ++   + GY  K G +     +     I D 
Sbjct: 293 FSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSV--QSGIDDA 350

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
              + ++  Y K GD+ +A+++F+ M  + NV  W++++ GYA+ G  +E+L LF +M  
Sbjct: 351 ALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHE 410

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
            G+ PD  ++   +     +     G   H ++ +        V  ALI  Y K   + +
Sbjct: 411 LGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGD 470

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           A  +F  M +++ IS+N +I+G   NG   EA++ F +M T+G   D +  L VL AC+ 
Sbjct: 471 AVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQ 530

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
           S     G R+        G+  +    + L+D+ S   + +    I  SM  K N+  W 
Sbjct: 531 SRYWFAG-RVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQK-NVVSWT 588

Query: 481 TLL 483
            ++
Sbjct: 589 AMI 591



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 208/450 (46%), Gaps = 40/450 (8%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           M+ A R+F+ ++  +    N+MI G   +     A+  +  M  +G  + + T   VL A
Sbjct: 255 MEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPA 314

Query: 122 C-GVLMGLVEGTEIHGEVVKMGFLC----------DVFVVNGLIGMYSKCGHMGCARSVF 170
           C G+  GL+ G  +HG  VK G L           D  + + L+ MY KCG M  AR VF
Sbjct: 315 CAGLGYGLI-GKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVF 373

Query: 171 EGSEIKDLVS-WNLVLRGFVECGEMGKAREVFDEM------PQKDAISWSIMIDGYRKKK 223
           +    K  V  WNL++ G+ + GE  ++  +F +M      P + AIS  +      K  
Sbjct: 374 DAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLL------KCI 427

Query: 224 GDISSARI-LFEHMPIKDL------ISWNSMIDGYAK---IGDLVAAQQLFNEMPERNVF 273
             +S AR  L  H  I  L         N++I  YAK   IGD V    +FN MP ++  
Sbjct: 428 TCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVL---VFNRMPRQDTI 484

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
           SW+ +I G + +G   EA+ LF  M  QG   D ++++  + ACAQ      G+ +H + 
Sbjct: 485 SWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYS 544

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
            ++ +  +  +  AL+DMY  C       +IF SM +KNV+S+  MI      G  ++  
Sbjct: 545 VKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVA 604

Query: 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
               +M  +GI  D       L A +      +G  +     R+ G+E  L   + L+++
Sbjct: 605 GLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRN-GMEKLLPVANALMEM 663

Query: 454 LSRAGELEQALNIVESMPMKPNLALWGTLL 483
             +   +E+A  I + +  K ++  W TL+
Sbjct: 664 YVKCRNVEEARLIFDRVTNK-DVISWNTLI 692



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 107/453 (23%), Positives = 202/453 (44%), Gaps = 61/453 (13%)

Query: 87  YTQSSNPQKALSFYVNMKRKGLL-----------------VDNYTYPFVLKACGVLMGLV 129
           ++  + P +ALS  VN++ + L                  VD  +Y  V++ CG    L 
Sbjct: 55  WSTKNPPSRALSSDVNLRIQRLCQAGDLAGALRLLGSDGGVDVRSYCMVVQLCGEERSLE 114

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIG-----MYSKCGHMGCARSVFEG--SEIKDLVSWN 182
                H  +++            ++G      Y KCG +G AR+VF+G   +  D+  W 
Sbjct: 115 AAKRAHA-LIRASSAAATGGKGSVLGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWT 173

Query: 183 LVLRGFVECGEMGKAREVFDEM------PQKDAISWSIMIDGYRKKKGDISSARI---LF 233
            ++  + + G+  +A  +F +M      P   A+S  +         G ++   +   L 
Sbjct: 174 SLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKC---VSSLGSLTEGEVIHGLL 230

Query: 234 EHMPIKDLIS-WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
           E + +    +  N++I  Y++ G +  A ++F+ M  R+  SW+ MI G   +G    A+
Sbjct: 231 EKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAV 290

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM----------DM 342
            LF +M  QG     ++V+  + ACA +G   +GK +H +  +S +            D 
Sbjct: 291 DLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDA 350

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKK-NVISYNVMIAGLGMNGFGEEALKCFAQMET 401
            + + L+ MY+KCG +  ARR+F +M+ K NV  +N+++ G    G  EE+L  F QM  
Sbjct: 351 ALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHE 410

Query: 402 EGIPKDD-----LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456
            GI  D+     L+     ++C+  GL   GY +       C +       + L+   ++
Sbjct: 411 LGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAV------CNALISFYAK 464

Query: 457 AGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
           +  +  A+ +   MP +  ++ W +++  C ++
Sbjct: 465 SNMIGDAVLVFNRMPRQDTIS-WNSVISGCSSN 496



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 153/331 (46%), Gaps = 10/331 (3%)

Query: 46  TLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKR 105
           +L+  L+ + S N  +     ++F  + Q N      MI  Y ++    K       M  
Sbjct: 554 SLANALLDMYS-NCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVL 612

Query: 106 KGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGC 165
            G+  D +     L A      L +G  +HG  ++ G    + V N L+ MY KC ++  
Sbjct: 613 DGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEE 672

Query: 166 ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP---QKDAISWSIMIDGYRK- 221
           AR +F+    KD++SWN ++ G+       ++  +F +M    + +A++ + ++      
Sbjct: 673 ARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQFRPNAVTMTCILPAAASI 732

Query: 222 ---KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM 278
              ++G    A  L     ++D  + N+++D Y K G L+ A+ LF+ + ++N+ SW+IM
Sbjct: 733 SSLERGREIHAYALRRGF-LEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIM 791

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG-ALDLGKWIHVFMKRSR 337
           I GY  HG  K A+ LF +M   G+ PD  S    + AC   G A +  ++     K  +
Sbjct: 792 IAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYK 851

Query: 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           I   +   T ++D+  + G L EA     SM
Sbjct: 852 IEPKLKHYTCIVDLLSRTGDLKEALEFIESM 882


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 169/474 (35%), Positives = 278/474 (58%), Gaps = 48/474 (10%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           +V     ++  Y+K   +  AR  F+    + +VSWN +L G+ + G   +   +FDEM 
Sbjct: 193 NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMV 252

Query: 206 ----QKDAISW-----------------------------------SIMIDGYRKKKGDI 226
               + D  +W                                   + ++D Y  K G I
Sbjct: 253 NAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMY-AKCGSI 311

Query: 227 SSARILFEHM-PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
            +AR +F+ +   ++ ++WN+MI  Y ++G+L +A++LFN MP RNV +W+ MI GYAQ+
Sbjct: 312 GAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQN 371

Query: 286 GNPKEALYLFREML-CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIV 344
           G    A+ LF+EM+  + + PD ++++  ISAC  +GAL+LG W+  F+  ++I + +  
Sbjct: 372 GQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISG 431

Query: 345 QTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGI 404
             A+I MY +CGS+++A+R+F  M  ++V+SYN +I+G   +G G EA+   + M+  GI
Sbjct: 432 HNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGI 491

Query: 405 PKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL 464
             D + F+GVL ACSH+GL  EG ++F+S+K     +P ++HY+C+VDLL R GELE A 
Sbjct: 492 EPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHYACMVDLLGRVGELEDAK 546

Query: 465 NIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524
             +E MPM+P+  ++G+LL A R H+ V L E+    L EL+ D+ G ++LLSNIYA AG
Sbjct: 547 RTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAG 606

Query: 525 MWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL-ELVIQ 577
            W+   RIR+ M+K  +KK TG S +E  G + +F+  +    +S+++ +L+I+
Sbjct: 607 RWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIE 660



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 149/522 (28%), Positives = 257/522 (49%), Gaps = 87/522 (16%)

Query: 26  THILQILAQLTTNDLITEPFTLSQLLMSLT----SPNTLNMDQAERLFNQIYQPNTYMHN 81
           +H+ Q+ AQ+  N L    + ++ L+   T     P+  ++     LFN    PN ++  
Sbjct: 15  SHLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHL-----LFNSTLNPNVFVFT 69

Query: 82  TMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKM 141
           +M+R Y+   +  K +  + +M+  G+  D + YP ++K+ G       G   H  V+K+
Sbjct: 70  SMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGN-----GGIGFHAHVLKL 124

Query: 142 GFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVF 201
           G   D FV N +I MY++ G                                +G AR+VF
Sbjct: 125 GHGSDAFVRNAVIDMYARLG-------------------------------PIGHARKVF 153

Query: 202 DEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVA 259
           DE+P  ++    W+ M+ GY K + +   A+ LF+ MP +++I+W +M+ GYAK+ DL A
Sbjct: 154 DEIPDYERKVADWNAMVSGYWKWESE-GQAQWLFDVMPERNVITWTAMVTGYAKVKDLEA 212

Query: 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
           A++ F+ MPER+V SW+ M+ GYAQ+G  +E L LF EM+  G+ PD  + +  ISAC+ 
Sbjct: 213 ARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSS 272

Query: 320 VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS---------------------- 357
            G   L   +   + + +I ++  V+TAL+DMY KCGS                      
Sbjct: 273 RGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNA 332

Query: 358 ----------LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET-EGIPK 406
                     LD AR +F +M  +NV+++N MIAG   NG    A++ F +M T + +  
Sbjct: 333 MISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTP 392

Query: 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466
           D++  + V+ AC H G    G  + + +  +  I+  +  ++ ++ + SR G +E A  +
Sbjct: 393 DEVTMVSVISACGHLGALELGNWVVRFLTEN-QIKLSISGHNAMIFMYSRCGSMEDAKRV 451

Query: 467 VESMPMKPNLALWGTLL--LACRNH--QNVTLAEVVVEGLVE 504
            + M  + ++  + TL+   A   H  + + L   + EG +E
Sbjct: 452 FQEMATR-DVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIE 492



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 171/371 (46%), Gaps = 46/371 (12%)

Query: 39  DLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALS 98
           D++ E   ++   M        +++ A R F+ + + +    N M+ GY Q+   ++ L 
Sbjct: 187 DVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLR 246

Query: 99  FYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYS 158
            +  M   G+  D  T+  V+ AC           +   + +     + FV   L+ MY+
Sbjct: 247 LFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYA 306

Query: 159 KCGHMGCARSVF-EGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMID 217
           KCG +G AR +F E    ++ V+WN ++  +   G +  ARE+F+ MP ++ ++W+ MI 
Sbjct: 307 KCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIA 366

Query: 218 GYRKKKGDISSARILFE-----------------------HMPIKDLISW---------- 244
           GY  + G  + A  LF+                       H+   +L +W          
Sbjct: 367 GY-AQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQI 425

Query: 245 -------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
                  N+MI  Y++ G +  A+++F EM  R+V S++ +I G+A HG+  EA+ L   
Sbjct: 426 KLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMST 485

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
           M   G+ PD ++ +G ++AC+  G L+ G+ +   +K   I         ++D+  + G 
Sbjct: 486 MKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDH----YACMVDLLGRVGE 541

Query: 358 LDEARRIFYSM 368
           L++A+R    M
Sbjct: 542 LEDAKRTMERM 552



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 128/278 (46%), Gaps = 24/278 (8%)

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           LFN     NVF ++ M+  Y+   +  + + +F  M   GVRPD       I +    G 
Sbjct: 56  LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNGG- 114

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT--KKNVISYNVMI 380
             +G   H  + +     D  V+ A+IDMY + G +  AR++F  +   ++ V  +N M+
Sbjct: 115 --IG--FHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMV 170

Query: 381 AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRH--C 438
           +G     + +   +  AQ   + +P+ ++I    ++    +G A    +  ++ +R+  C
Sbjct: 171 SG-----YWKWESEGQAQWLFDVMPERNVITWTAMV----TGYAK--VKDLEAARRYFDC 219

Query: 439 GIEPKLEHYSCLVDLLSRAGELEQALNIVESM---PMKPNLALWGTLLLACRNHQNVTLA 495
             E  +  ++ ++   ++ G  E+ L + + M    ++P+   W T++ AC +  +  LA
Sbjct: 220 MPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLA 279

Query: 496 EVVVEGLVELKAD-DCGLYVLLSNIYADAGMWEHALRI 532
             +V  L + +   +C +   L ++YA  G    A RI
Sbjct: 280 ASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRI 317


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 174/526 (33%), Positives = 307/526 (58%), Gaps = 7/526 (1%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D   +LF  + + +    N MI G  Q+    +AL  + +M++ G+  D+ T   +L A
Sbjct: 298 LDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPA 357

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
              L G  +G E+HG +V+     DVF+V+ L+ +Y KC  +  A+SV++ S+  D+V  
Sbjct: 358 LTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIG 417

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFE--HMPIK 239
           + ++ G+V  G   +A ++F  + ++     ++ I         +++ ++  E     +K
Sbjct: 418 STMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALK 477

Query: 240 DLISW-----NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
           +         ++++D YAK G L  +  +F+++  ++  +W+ MI  +AQ+G P+EAL L
Sbjct: 478 NAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNL 537

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           FREM  +GV+   +++   +SACA + A+  GK IH  + +  I  D+  ++ALIDMY K
Sbjct: 538 FREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGK 597

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG+L+ A R+F SM +KN +S+N +IA  G  G  +E++     M+ EG   D + FL +
Sbjct: 598 CGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLAL 657

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           + AC+H+G   EG R+F+ M     I P++EH++C+VDL SRAG+L++A+ ++  MP KP
Sbjct: 658 VSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKP 717

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           +  +WG LL ACR H+NV LAE+  + L +L   + G YVL+SNI A AG W+   ++R+
Sbjct: 718 DAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRR 777

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFV 580
           +M+  K++K  G S ++++     FV+ +     SE++ + ++S +
Sbjct: 778 LMKDTKVQKIPGYSWVDVNNTSHLFVAADKSHPDSEDIYMSLKSIL 823



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 135/487 (27%), Positives = 239/487 (49%), Gaps = 24/487 (4%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A ++F+ + + +  + N M+ GY ++ +   A+  + +M+  G   +  T    L     
Sbjct: 200 ARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSAT 259

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
              L  G ++H   VK G   +V V N L+ MY+KC  +     +F      DLV+WN +
Sbjct: 260 ESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGM 319

Query: 185 LRGFVECGEMGKAREVFDEMPQK----DAISWSIMI------DGYRKKK---GDISSARI 231
           + G V+ G + +A  +F +M +     D+++   ++      +G+ + K   G I    +
Sbjct: 320 ISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCV 379

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
              HM   D+   ++++D Y K   +  AQ +++     +V   S MI GY  +G  +EA
Sbjct: 380 ---HM---DVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEA 433

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           + +FR +L QG+RP+ +++   + ACA + A+ LG+ +H +  ++       V++AL+DM
Sbjct: 434 VKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDM 493

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y KCG LD +  IF  ++ K+ +++N MI+    NG  EEAL  F +M  EG+   ++  
Sbjct: 494 YAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTI 553

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
             VL AC+       G  I   + +   I   L   S L+D+  + G LE A  + ESMP
Sbjct: 554 SSVLSACASLPAIYYGKEIHGVVIKG-PIRADLFAESALIDMYGKCGNLEWAHRVFESMP 612

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLSNIYADAGMWEHA 529
            K N   W +++ +   +  V  +  ++  + E   KAD      L+S   A AG  +  
Sbjct: 613 EK-NEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSAC-AHAGQVQEG 670

Query: 530 LRIRKMM 536
           LR+ + M
Sbjct: 671 LRLFRCM 677



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 215/421 (51%), Gaps = 29/421 (6%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNM--KRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEV 138
           N +IRG T + + + AL FY+ M       L D++T+P+V+K+C  L  +  G  +H   
Sbjct: 113 NWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTA 172

Query: 139 VKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAR 198
             +G   D+FV + LI MY+  G +  AR VF+G   +D V WN+++ G+V+ G +  A 
Sbjct: 173 RTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAV 232

Query: 199 EVFDEM------PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-----DLISWNSM 247
           E+F +M      P    ++  + +      + D+    +    + +K     ++   N++
Sbjct: 233 ELFGDMRASGCEPNFATLACFLSVSA---TESDLFFG-VQLHTLAVKYGLESEVAVANTL 288

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           +  YAK   L    +LF  MP  ++ +W+ MI G  Q+G   +AL LF +M   G+RPD 
Sbjct: 289 VSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDS 348

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           ++++  + A   +   + GK +H ++ R+ + MD+ + +AL+D+Y KC ++  A+ ++ S
Sbjct: 349 VTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDS 408

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS-----G 422
               +V+  + MI+G  +NG  +EA+K F  +  +GI  + +    VL AC+       G
Sbjct: 409 SKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLG 468

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
                Y +  + +  C +E      S L+D+ ++ G L+ +  I   +  K  +  W ++
Sbjct: 469 QELHSYALKNAYEGRCYVE------SALMDMYAKCGRLDLSHYIFSKISAKDEVT-WNSM 521

Query: 483 L 483
           +
Sbjct: 522 I 522



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 167/366 (45%), Gaps = 16/366 (4%)

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGF-LCDVFVVNGLIGMYSKCGHMGCARSVFEG---S 173
           VL+ C     L  G ++HG  V  G    D  +   L+GMY        A +VF      
Sbjct: 45  VLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRG 104

Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEM------PQKDAISWSIMIDGYRKKKGDIS 227
                + WN ++RG    G+   A   + +M      P  D+ ++  ++       G I+
Sbjct: 105 AAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSC-AALGAIA 163

Query: 228 SARILFEHMPI----KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
             R++           D+   +++I  YA  G L  A+Q+F+ M ER+   W++M+DGY 
Sbjct: 164 LGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYV 223

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
           + G+   A+ LF +M   G  P+  ++   +S  A    L  G  +H    +  +  ++ 
Sbjct: 224 KAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVA 283

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           V   L+ MY KC  LD+  ++F  M + +++++N MI+G   NGF ++AL  F  M+  G
Sbjct: 284 VANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSG 343

Query: 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
           I  D +  + +L A +      +G  +   + R+C +   +   S LVD+  +   +  A
Sbjct: 344 IRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNC-VHMDVFLVSALVDIYFKCRAVRMA 402

Query: 464 LNIVES 469
            ++ +S
Sbjct: 403 QSVYDS 408


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 177/514 (34%), Positives = 284/514 (55%), Gaps = 9/514 (1%)

Query: 58  NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF 117
           N  ++  A  +F      N  + N M+  + +  N  ++   +  M+ KGL+ + +TYP 
Sbjct: 361 NCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPS 420

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           +L+ C  +  L  G +IH +V+K GF  +V+V + LI MY+K G +  A  +       D
Sbjct: 421 ILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDD 480

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARILF 233
           +VSW  ++ G+ +     +A + F EM     Q D I +S  I      +  ++  R + 
Sbjct: 481 VVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQA-LNQGRQIH 539

Query: 234 EHMPI----KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
               +    +DL   N+++  YA+ G +  A   F ++  ++  SW+ +I G+AQ G  +
Sbjct: 540 AQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCE 599

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           +AL +F +M    +     +   A+SA A +  +  GK IH  + +     D+ V  ALI
Sbjct: 600 DALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALI 659

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
             Y KCGS+++ARR F  M +KN +S+N MI G   +G+G EA+  F +M+  G   + +
Sbjct: 660 TFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHV 719

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            F+GVL ACSH GL T+G   F+SM +  G+ PK  HY+C+VDL+SRAG L +A   +E 
Sbjct: 720 TFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEE 779

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           MP++P+  +W TLL AC  H+NV + E   + L+EL+ +D   YVLLSN+YA +G W+  
Sbjct: 780 MPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCR 839

Query: 530 LRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
            + R+MMR R +KKE GRS IE+  ++  F  G+
Sbjct: 840 DQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGD 873



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/462 (26%), Positives = 225/462 (48%), Gaps = 13/462 (2%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           QI A++  + L+  P  +S  L+ L + N L +  A ++F+ +   ++     MI G++Q
Sbjct: 133 QIHARIICHGLLCSPI-ISNPLIGLYAKNGL-IISARKVFDNLCTKDSVSWVAMISGFSQ 190

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
           +   ++A+  +  M   G+    Y +  VL  C  +     G ++H  V K G   + +V
Sbjct: 191 NGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYV 250

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK-- 207
            N L+ +YS+  +   A  VF   + KD VS+N ++ G  + G    A E+F +M +   
Sbjct: 251 CNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYL 310

Query: 208 --DAISWSIMIDGYRKK----KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQ 261
             D ++ + ++          KG+   + ++   +   D+I   +++D Y    D+  A 
Sbjct: 311 KPDCVTVASLLSACASNGALCKGEQLHSYVIKAGIS-SDMIVEGALLDLYVNCSDIKTAH 369

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
           ++F      NV  W++M+  + +  N  E+  +FR+M  +G+ P+  +    +  C  VG
Sbjct: 370 EMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVG 429

Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
           ALDLG+ IH  + ++    ++ V + LIDMY K G LD A  I  ++T+ +V+S+  +I+
Sbjct: 430 ALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALIS 489

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
           G   +    EALK F +M   GI  D++ F   + AC+      +G +I  +     G  
Sbjct: 490 GYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQI-HAQSYVSGYS 548

Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             L   + LV L +R G +++A    E +  K +++ W  L+
Sbjct: 549 EDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSIS-WNGLI 589



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/439 (25%), Positives = 224/439 (51%), Gaps = 12/439 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D   ++F  +   +    + +I G+ +     + L  +  M  + +     ++  VL+
Sbjct: 60  DLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLR 119

Query: 121 AC-GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           AC G  +G+    +IH  ++  G LC   + N LIG+Y+K G +  AR VF+    KD V
Sbjct: 120 ACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSV 179

Query: 180 SWNLVLRGFVECGEMGKAREVFDEM------PQKDAISWSIMIDGYRKKKGDISSA--RI 231
           SW  ++ GF + G   +A  +F EM      P     S S++    + K  D+      +
Sbjct: 180 SWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFS-SVLSGCTKIKLFDVGEQLHAL 238

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           +F++    +    N+++  Y+++ + V+A+++F++M  ++  S++ +I G AQ G    A
Sbjct: 239 VFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGA 298

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           L LF +M    ++PD ++V   +SACA  GAL  G+ +H ++ ++ I+ DMIV+ AL+D+
Sbjct: 299 LELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDL 358

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y+ C  +  A  +F +   +NV+ +NVM+   G      E+ + F QM+ +G+  +   +
Sbjct: 359 YVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTY 418

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
             +L  C+  G    G +I   + +  G +  +   S L+D+ ++ G+L+ A  I+ ++ 
Sbjct: 419 PSILRTCTSVGALDLGEQIHTQVIK-TGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLT 477

Query: 472 MKPNLALWGTLLLACRNHQ 490
            + ++  W  L+     H 
Sbjct: 478 -EDDVVSWTALISGYAQHN 495



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 205/392 (52%), Gaps = 12/392 (3%)

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           M+ +G+  +  TY ++L  C     LVE  ++HG+++K+GF  +  + N L+ +Y   G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA----ISWSIMI-- 216
           +     VFE    + + SW+ ++ GF+E     +  ++F  M +++     IS++ ++  
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 217 -DGYR--KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
             G+R   +  +   ARI+   +    +IS N +I  YAK G +++A+++F+ +  ++  
Sbjct: 121 CSGHRIGIRYAEQIHARIICHGLLCSPIIS-NPLIGLYAKNGLIISARKVFDNLCTKDSV 179

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
           SW  MI G++Q+G  +EA++LF EM   G+ P        +S C ++   D+G+ +H  +
Sbjct: 180 SWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALV 239

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
            +   +++  V  AL+ +Y +  +   A ++F  M  K+ +S+N +I+GL   GF + AL
Sbjct: 240 FKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGAL 299

Query: 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
           + F +M+ + +  D +    +L AC+ +G   +G ++  S     GI   +     L+DL
Sbjct: 300 ELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQL-HSYVIKAGISSDMIVEGALLDL 358

Query: 454 LSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
                +++ A  +  +   + N+ LW  +L+A
Sbjct: 359 YVNCSDIKTAHEMFLTAQTE-NVVLWNVMLVA 389


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 174/526 (33%), Positives = 307/526 (58%), Gaps = 7/526 (1%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D   +LF  + + +    N MI G  Q+    +AL  + +M++ G+  D+ T   +L A
Sbjct: 298 LDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPA 357

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
              L G  +G E+HG +V+     DVF+V+ L+ +Y KC  +  A+SV++ S+  D+V  
Sbjct: 358 LTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIG 417

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFE--HMPIK 239
           + ++ G+V  G   +A ++F  + ++     ++ I         +++ ++  E     +K
Sbjct: 418 STMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALK 477

Query: 240 DLISW-----NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
           +         ++++D YAK G L  +  +F+++  ++  +W+ MI  +AQ+G P+EAL L
Sbjct: 478 NAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNL 537

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           FREM  +GV+   +++   +SACA + A+  GK IH  + +  I  D+  ++ALIDMY K
Sbjct: 538 FREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGK 597

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG+L+ A R+F SM +KN +S+N +IA  G  G  +E++     M+ EG   D + FL +
Sbjct: 598 CGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLAL 657

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           + AC+H+G   EG R+F+ M     I P++EH++C+VDL SRAG+L++A+ ++  MP KP
Sbjct: 658 VSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKP 717

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           +  +WG LL ACR H+NV LAE+  + L +L   + G YVL+SNI A AG W+   ++R+
Sbjct: 718 DAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRR 777

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFV 580
           +M+  K++K  G S ++++     FV+ +     SE++ + ++S +
Sbjct: 778 LMKDTKVQKIPGYSWVDVNNTSHLFVAADKSHPDSEDIYMSLKSIL 823



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 135/488 (27%), Positives = 239/488 (48%), Gaps = 24/488 (4%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            A ++F+ + + +  + N M+ GY ++ +   A+  + +M+  G   +  T    L    
Sbjct: 199 DARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSA 258

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
               L  G ++H   VK G   +V V N L+ MY+KC  +     +F      DLV+WN 
Sbjct: 259 TESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNG 318

Query: 184 VLRGFVECGEMGKAREVFDEMPQK----DAISWSIMI------DGYRKKK---GDISSAR 230
           ++ G V+ G + +A  +F +M +     D+++   ++      +G+ + K   G I    
Sbjct: 319 MISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNC 378

Query: 231 ILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
           +   HM   D+   ++++D Y K   +  AQ +++     +V   S MI GY  +G  +E
Sbjct: 379 V---HM---DVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQE 432

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
           A+ +FR +L QG+RP+ +++   + ACA + A+ LG+ +H +  ++       V++AL+D
Sbjct: 433 AVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMD 492

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           MY KCG LD +  IF  ++ K+ +++N MI+    NG  EEAL  F +M  EG+   ++ 
Sbjct: 493 MYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVT 552

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
              VL AC+       G  I   + +   I   L   S L+D+  + G LE A  + ESM
Sbjct: 553 ISSVLSACASLPAIYYGKEIHGVVIKG-PIRADLFAESALIDMYGKCGNLEWAHRVFESM 611

Query: 471 PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLSNIYADAGMWEH 528
           P K N   W +++ +   +  V  +  ++  + E   KAD      L+S   A AG  + 
Sbjct: 612 PEK-NEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSAC-AHAGQVQE 669

Query: 529 ALRIRKMM 536
            LR+ + M
Sbjct: 670 GLRLFRCM 677



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 215/421 (51%), Gaps = 29/421 (6%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNM--KRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEV 138
           N +IRG T + + + AL FY+ M       L D++T+P+V+K+C  L  +  G  +H   
Sbjct: 113 NWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTA 172

Query: 139 VKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAR 198
             +G   D+FV + LI MY+  G +  AR VF+G   +D V WN+++ G+V+ G +  A 
Sbjct: 173 RTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAV 232

Query: 199 EVFDEM------PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-----DLISWNSM 247
           E+F +M      P    ++  + +      + D+    +    + +K     ++   N++
Sbjct: 233 ELFGDMRASGCEPNFATLACFLSVSA---TESDLFFG-VQLHTLAVKYGLESEVAVANTL 288

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           +  YAK   L    +LF  MP  ++ +W+ MI G  Q+G   +AL LF +M   G+RPD 
Sbjct: 289 VSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDS 348

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           ++++  + A   +   + GK +H ++ R+ + MD+ + +AL+D+Y KC ++  A+ ++ S
Sbjct: 349 VTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDS 408

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS-----G 422
               +V+  + MI+G  +NG  +EA+K F  +  +GI  + +    VL AC+       G
Sbjct: 409 SKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLG 468

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
                Y +  + +  C +E      S L+D+ ++ G L+ +  I   +  K  +  W ++
Sbjct: 469 QELHSYALKNAYEGRCYVE------SALMDMYAKCGRLDLSHYIFSKISAKDEVT-WNSM 521

Query: 483 L 483
           +
Sbjct: 522 I 522



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 167/366 (45%), Gaps = 16/366 (4%)

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGF-LCDVFVVNGLIGMYSKCGHMGCARSVFEG---S 173
           VL+ C     L  G ++HG  V  G    D  +   L+GMY        A +VF      
Sbjct: 45  VLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRG 104

Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEM------PQKDAISWSIMIDGYRKKKGDIS 227
                + WN ++RG    G+   A   + +M      P  D+ ++  ++       G I+
Sbjct: 105 AAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSC-AALGAIA 163

Query: 228 SARILFEHMPI----KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
             R++           D+   +++I  YA  G L  A+Q+F+ M ER+   W++M+DGY 
Sbjct: 164 LGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYV 223

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
           + G+   A+ LF +M   G  P+  ++   +S  A    L  G  +H    +  +  ++ 
Sbjct: 224 KAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVA 283

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           V   L+ MY KC  LD+  ++F  M + +++++N MI+G   NGF ++AL  F  M+  G
Sbjct: 284 VANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSG 343

Query: 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
           I  D +  + +L A +      +G  +   + R+C +   +   S LVD+  +   +  A
Sbjct: 344 IRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNC-VHMDVFLVSALVDIYFKCRAVRMA 402

Query: 464 LNIVES 469
            ++ +S
Sbjct: 403 QSVYDS 408


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 171/519 (32%), Positives = 286/519 (55%), Gaps = 9/519 (1%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ A  +F  I  P+    N +I G         AL     MK  G   + +T    LKA
Sbjct: 234 IEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKA 293

Query: 122 CGVLMGLVE-GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           C   MG  E G ++H  ++KM    D+F   GL+ MYSKC  M  AR  ++    KD+++
Sbjct: 294 CAA-MGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIA 352

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK- 239
           WN ++ G+ +CG+   A  +F +M  +D       +    K    + + ++  +   I  
Sbjct: 353 WNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISI 412

Query: 240 ------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
                 D    NS++D Y K   +  A ++F E    ++ +++ MI  Y+Q+G+ +EAL 
Sbjct: 413 KSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALK 472

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           L+ +M    ++PD       ++ACA + A + GK +HV   +     D+    +L++MY 
Sbjct: 473 LYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYA 532

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCGS+++A R F  +  + ++S++ MI G   +G G+EAL+ F QM  +G+P + +  + 
Sbjct: 533 KCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVS 592

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           VL AC+H+GL  EG + F+ M+   GI+P  EHY+C++DLL R+G+L +A+ +V S+P +
Sbjct: 593 VLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFE 652

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
            +  +WG LL A R H+N+ L +   + L +L+ +  G +VLL+NIYA AGMWE+  ++R
Sbjct: 653 ADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVR 712

Query: 534 KMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           K M+  K+KKE G S IEI   +  F+ G+    +S+E+
Sbjct: 713 KFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEI 751



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 131/464 (28%), Positives = 232/464 (50%), Gaps = 40/464 (8%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A +L ++  + +    ++++ GY Q+   ++AL  +  M   G+  + +T+P VLKAC +
Sbjct: 35  ARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSM 94

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
              L  G ++HG  V  GF  D FV N L+ MY+KCG +  +R +F G   +++VSWN +
Sbjct: 95  KRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNAL 154

Query: 185 LRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRK-KKGDISSA-RILFEHMPI 238
              +V+    G+A  +F EM +     +  S SI+++     ++GD+      L   M +
Sbjct: 155 FSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGL 214

Query: 239 K-DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
             D  S N+++D Y+K G++  A  +F ++   +V SW+ +I G   H     AL L  E
Sbjct: 215 DLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDE 274

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
           M   G RP++ ++  A+ ACA +G  +LG+ +H  + +     D+     L+DMY KC  
Sbjct: 275 MKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEM 334

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
           +D+ARR + SM KK++I++N +I+G    G   +A+  F++M +E I  +      VL +
Sbjct: 335 MDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKS 394

Query: 418 CS----------------HSGLATEGYRIFQSMK-----RHCGIEPK---------LEHY 447
            +                 SG+ ++ Y I   +       H     K         L  Y
Sbjct: 395 VASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAY 454

Query: 448 SCLVDLLSRAGELEQALNI---VESMPMKPNLALWGTLLLACRN 488
           + ++   S+ G+ E+AL +   ++   +KP+  +  +LL AC N
Sbjct: 455 TSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACAN 498



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 218/439 (49%), Gaps = 17/439 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D + RLF  I + N    N +   Y QS    +A+  +  M R G++ + ++   +L A
Sbjct: 133 LDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNA 192

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L     G +IHG ++KMG   D F  N L+ MYSK G +  A +VF+     D+VSW
Sbjct: 193 CAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSW 252

Query: 182 NLVLRGFV--ECGEMGKAREVFDEM------PQKDAISWSI---MIDGYRKKKGDISSAR 230
           N ++ G V  +C ++  A  + DEM      P    +S ++      G+++    + S+ 
Sbjct: 253 NAIIAGCVLHDCNDL--ALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSL 310

Query: 231 ILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
           I  +     DL +   ++D Y+K   +  A++ ++ MP++++ +W+ +I GY+Q G+  +
Sbjct: 311 IKMD--AHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLD 368

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
           A+ LF +M  + +  +  ++   + + A + A+ + K IH    +S I  D  V  +L+D
Sbjct: 369 AVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLD 428

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
            Y KC  +DEA +IF   T +++++Y  MI      G GEEALK + QM+   I  D  I
Sbjct: 429 TYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFI 488

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
              +L AC++     +G ++     +  G    +   + LV++ ++ G +E A      +
Sbjct: 489 CSSLLNACANLSAYEQGKQLHVHAIKF-GFMCDIFASNSLVNMYAKCGSIEDADRAFSEI 547

Query: 471 PMKPNLALWGTLLLACRNH 489
           P +  +  W  ++     H
Sbjct: 548 PNR-GIVSWSAMIGGYAQH 565



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 186/371 (50%), Gaps = 20/371 (5%)

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           E+H  ++K GF  D  + N L+ +YSKC   G AR + + S   D+VSW+ +L G+V+ G
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 193 EMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARILFEHMPI----KDLISW 244
            + +A  VF+EM     + +  ++  ++     K+ D++  R +     +     D    
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKR-DLNMGRKVHGMAVVTGFESDGFVA 120

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           N+++  YAK G L  +++LF  + ERNV SW+ +   Y Q     EA+ LF+EM+  G+ 
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIM 180

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           P+  S+   ++ACA +   DLG+ IH  M +  + +D     AL+DMY K G ++ A  +
Sbjct: 181 PNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAV 240

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F  +   +V+S+N +IAG  ++   + AL    +M+  G   +       L AC+  G  
Sbjct: 241 FQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFK 300

Query: 425 TEGYRIFQS---MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
             G ++  S   M  H  +   +     LVD+ S+   ++ A    +SMP K  +A W  
Sbjct: 301 ELGRQLHSSLIKMDAHSDLFAAVG----LVDMYSKCEMMDDARRAYDSMPKKDIIA-WNA 355

Query: 482 LLLA---CRNH 489
           L+     C +H
Sbjct: 356 LISGYSQCGDH 366



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 161/326 (49%), Gaps = 14/326 (4%)

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           N ++  Y+K      A++L +E  E +V SWS ++ GY Q+G  +EAL +F EM   GV+
Sbjct: 20  NHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVK 79

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
            +  +    + AC+    L++G+ +H     +    D  V   L+ MY KCG LD++RR+
Sbjct: 80  CNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRL 139

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F  + ++NV+S+N + +    +    EA+  F +M   GI  ++     +L AC+     
Sbjct: 140 FGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEG 199

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
             G +I   M +  G++      + LVD+ S+AGE+E A+ + + +   P++  W  ++ 
Sbjct: 200 DLGRKIHGLMLK-MGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIA-HPDVVSWNAIIA 257

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
            C  H    LA ++++   E+K          S    +      AL+    M  +++ ++
Sbjct: 258 GCVLHDCNDLALMLLD---EMKG---------SGTRPNMFTLSSALKACAAMGFKELGRQ 305

Query: 545 TGRSVIEIDGNIKEFVSGEIFDVQSE 570
              S+I++D +   F +  + D+ S+
Sbjct: 306 LHSSLIKMDAHSDLFAAVGLVDMYSK 331



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 132/281 (46%), Gaps = 19/281 (6%)

Query: 22  SKTTTHILQILAQLTT----NDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNT 77
           S  +   +++  Q+ T    + + ++ + ++ LL +    N  ++D+A ++F +    + 
Sbjct: 394 SVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCN--HIDEASKIFEERTWEDL 451

Query: 78  YMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGE 137
             + +MI  Y+Q  + ++AL  Y+ M+   +  D +    +L AC  L    +G ++H  
Sbjct: 452 VAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVH 511

Query: 138 VVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKA 197
            +K GF+CD+F  N L+ MY+KCG +  A   F     + +VSW+ ++ G+ + G   +A
Sbjct: 512 AIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEA 571

Query: 198 REVFDEM-----PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS-----WNSM 247
             +F++M     P       S++        G ++  +  FE M +   I      +  M
Sbjct: 572 LRLFNQMLRDGVPPNHITLVSVLCAC--NHAGLVNEGKQYFEKMEVMFGIKPTQEHYACM 629

Query: 248 IDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
           ID   + G L  A +L N +P E + F W  ++     H N
Sbjct: 630 IDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKN 670


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 180/520 (34%), Positives = 289/520 (55%), Gaps = 9/520 (1%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A  +FN   + N  + N M+  + Q ++  K+   +  M+  G+  + +TYP +L+
Sbjct: 294 DVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILR 353

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C     +  G +IH   VK GF  D++V   LI MYSK G +  AR V E  + KD+VS
Sbjct: 354 TCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVS 413

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQ----KDAISWSIMIDGYRK----KKGDISSARIL 232
           W  ++ G+V+      A   F EM +     D I  +  I G       ++G    ARI 
Sbjct: 414 WTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIY 473

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
                  D+  WN++++ YA+ G +  A   F E+  ++  +W+ ++ G+AQ G  +EAL
Sbjct: 474 VSGYS-GDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEAL 532

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            +F  M   GV+ +V + + A+SA A +  +  GK IH  + ++  + +  V  ALI +Y
Sbjct: 533 KVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLY 592

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCGS ++A+  F  M+++N +S+N +I     +G G EAL  F QM+ EGI  +D+ F+
Sbjct: 593 GKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFI 652

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
           GVL ACSH GL  EG   F+SM    GI P+ +HY+C++D+  RAG+L++A   +E MP+
Sbjct: 653 GVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPI 712

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
             +  +W TLL AC+ H+N+ + E   + L+EL+  D   YVLLSN YA    W +  ++
Sbjct: 713 AADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQV 772

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           RKMMR R ++KE GRS IE+   +  F  G+     +E++
Sbjct: 773 RKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQI 812



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 148/555 (26%), Positives = 255/555 (45%), Gaps = 30/555 (5%)

Query: 47  LSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK 106
           +  LL+ L S N L +  A R+F ++   +      M+ GY Q+   ++AL  Y  M R 
Sbjct: 79  VGNLLIDLYSKNGLVLP-ARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137

Query: 107 GLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCA 166
           G++   Y    VL +C       +G  IH +  K GF  ++FV N +I +Y +CG    A
Sbjct: 138 GVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLA 197

Query: 167 RSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKK 222
             VF     +D V++N ++ G  +CG    A E+F+EM       D ++ S ++      
Sbjct: 198 ERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAAC-AS 256

Query: 223 KGDISSA----RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM 278
            GD+         LF+     D I   S++D Y K GD+  A  +FN     NV  W++M
Sbjct: 257 LGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLM 316

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338
           +  + Q  +  ++  LF +M   G+RP+  +    +  C     +DLG+ IH    ++  
Sbjct: 317 LVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGF 376

Query: 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
             DM V   LIDMY K G L++ARR+   + +K+V+S+  MIAG   +   ++AL  F +
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458
           M+  GI  D++     +  C+      +G +I   +    G    +  ++ LV+L +R G
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYV-SGYSGDVSIWNALVNLYARCG 495

Query: 459 ELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG----LYV 514
            + +A +  E +  K  +  W  L+          L E  ++  V ++ D  G    ++ 
Sbjct: 496 RIREAFSSFEEIEHKDEIT-WNGLV---SGFAQSGLHEEALK--VFMRMDQSGVKHNVFT 549

Query: 515 LLSNIYADAGMWEHALRIRKMMRKRKIK------KETGRSVIEIDGNIKEFVSGEI-FDV 567
            +S + A A + E  ++  K +  R IK       E G ++I + G    F   ++ F  
Sbjct: 550 FVSALSASANLAE--IKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSE 607

Query: 568 QSEELELVIQSFVKT 582
            SE  E+   + + +
Sbjct: 608 MSERNEVSWNTIITS 622



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 209/415 (50%), Gaps = 14/415 (3%)

Query: 86  GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC---GVLMGLVEGTEIHGEVVKMG 142
           G+    +P K LS + +  R+   +    +   L+AC   G    +V   EIH + V  G
Sbjct: 15  GFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVV--PEIHAKAVTRG 72

Query: 143 FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFD 202
                 V N LI +YSK G +  AR VFE    +D VSW  +L G+ + G   +A  ++ 
Sbjct: 73  LGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYR 132

Query: 203 EMPQKDAISWSIMIDGYRK---KKGDISSARIL----FEHMPIKDLISWNSMIDGYAKIG 255
           +M +   +    ++        K    +  R++    ++H    ++   N++I  Y + G
Sbjct: 133 QMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCG 192

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
               A+++F +MP R+  +++ +I G+AQ G+ + AL +F EM   G+ PD +++   ++
Sbjct: 193 SFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLA 252

Query: 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS 375
           ACA +G L  G  +H ++ ++ I+ D I++ +L+D+Y+KCG ++ A  IF S  + NV+ 
Sbjct: 253 ACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVL 312

Query: 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMK 435
           +N+M+   G      ++ + F QM+  GI  +   +  +L  C+ +     G +I  S+ 
Sbjct: 313 WNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQI-HSLS 371

Query: 436 RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
              G E  +     L+D+ S+ G LE+A  ++E +  K ++  W +++     H+
Sbjct: 372 VKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK-DVVSWTSMIAGYVQHE 425


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 180/520 (34%), Positives = 289/520 (55%), Gaps = 9/520 (1%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A  +FN   + N  + N M+  + Q ++  K+   +  M+  G+  + +TYP +L+
Sbjct: 294 DVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILR 353

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C     +  G +IH   VK GF  D++V   LI MYSK G +  AR V E  + KD+VS
Sbjct: 354 TCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVS 413

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQ----KDAISWSIMIDGYRK----KKGDISSARIL 232
           W  ++ G+V+      A   F EM +     D I  +  I G       ++G    ARI 
Sbjct: 414 WTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIY 473

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
                  D+  WN++++ YA+ G +  A   F E+  ++  +W+ ++ G+AQ G  +EAL
Sbjct: 474 VSGYS-GDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEAL 532

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            +F  M   GV+ +V + + A+SA A +  +  GK IH  + ++  + +  V  ALI +Y
Sbjct: 533 KVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLY 592

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCGS ++A+  F  M+++N +S+N +I     +G G EAL  F QM+ EGI  +D+ F+
Sbjct: 593 GKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFI 652

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
           GVL ACSH GL  EG   F+SM    GI P+ +HY+C++D+  RAG+L++A   +E MP+
Sbjct: 653 GVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPI 712

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
             +  +W TLL AC+ H+N+ + E   + L+EL+  D   YVLLSN YA    W +  ++
Sbjct: 713 AADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQV 772

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           RKMMR R ++KE GRS IE+   +  F  G+     +E++
Sbjct: 773 RKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQI 812



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 148/555 (26%), Positives = 255/555 (45%), Gaps = 30/555 (5%)

Query: 47  LSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK 106
           +  LL+ L S N L +  A R+F ++   +      M+ GY Q+   ++AL  Y  M R 
Sbjct: 79  VGNLLIDLYSKNGLVLP-ARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137

Query: 107 GLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCA 166
           G++   Y    VL +C       +G  IH +  K GF  ++FV N +I +Y +CG    A
Sbjct: 138 GVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLA 197

Query: 167 RSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKK 222
             VF     +D V++N ++ G  +CG    A E+F+EM       D ++ S ++      
Sbjct: 198 ERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAAC-AS 256

Query: 223 KGDISSA----RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM 278
            GD+         LF+     D I   S++D Y K GD+  A  +FN     NV  W++M
Sbjct: 257 LGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLM 316

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338
           +  + Q  +  ++  LF +M   G+RP+  +    +  C     +DLG+ IH    ++  
Sbjct: 317 LVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGF 376

Query: 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
             DM V   LIDMY K G L++ARR+   + +K+V+S+  MIAG   +   ++AL  F +
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458
           M+  GI  D++     +  C+      +G +I   +    G    +  ++ LV+L +R G
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYV-SGYSGDVSIWNALVNLYARCG 495

Query: 459 ELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG----LYV 514
            + +A +  E +  K  +  W  L+          L E  ++  V ++ D  G    ++ 
Sbjct: 496 RIREAFSSFEEIEHKDEIT-WNGLV---SGFAQSGLHEEALK--VFMRMDQSGVKHNVFT 549

Query: 515 LLSNIYADAGMWEHALRIRKMMRKRKIK------KETGRSVIEIDGNIKEFVSGEI-FDV 567
            +S + A A + E  ++  K +  R IK       E G ++I + G    F   ++ F  
Sbjct: 550 FVSALSASANLAE--IKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSE 607

Query: 568 QSEELELVIQSFVKT 582
            SE  E+   + + +
Sbjct: 608 MSERNEVSWNTIITS 622



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 209/415 (50%), Gaps = 14/415 (3%)

Query: 86  GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC---GVLMGLVEGTEIHGEVVKMG 142
           G+    +P K LS + +  R+   +    +   L+AC   G    +V   EIH + V  G
Sbjct: 15  GFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVV--PEIHAKAVTRG 72

Query: 143 FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFD 202
                 V N LI +YSK G +  AR VFE    +D VSW  +L G+ + G   +A  ++ 
Sbjct: 73  LGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYR 132

Query: 203 EMPQKDAISWSIMIDGYRK---KKGDISSARIL----FEHMPIKDLISWNSMIDGYAKIG 255
           +M +   +    ++        K    +  R++    ++H    ++   N++I  Y + G
Sbjct: 133 QMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCG 192

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
               A+++F +MP R+  +++ +I G+AQ G+ + AL +F EM   G+ PD +++   ++
Sbjct: 193 SFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLA 252

Query: 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS 375
           ACA +G L  G  +H ++ ++ I+ D I++ +L+D+Y+KCG ++ A  IF S  + NV+ 
Sbjct: 253 ACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVL 312

Query: 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMK 435
           +N+M+   G      ++ + F QM+  GI  +   +  +L  C+ +     G +I  S+ 
Sbjct: 313 WNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQI-HSLS 371

Query: 436 RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
              G E  +     L+D+ S+ G LE+A  ++E +  K ++  W +++     H+
Sbjct: 372 VKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK-DVVSWTSMIAGYVQHE 425


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 174/520 (33%), Positives = 289/520 (55%), Gaps = 9/520 (1%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N+  A++LFN +   N   +N +I GY +S    +AL  +  +++ GL +D  +     +
Sbjct: 325 NLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFR 384

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC V+ G +EG ++HG  +K     ++ V N ++ MY KCG +  A  VFE    +D VS
Sbjct: 385 ACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVS 444

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMID---GYRKKKGDIS-SARIL 232
           WN ++    + G   K   +F  M Q     D  ++  ++    G++     +    RI+
Sbjct: 445 WNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRII 504

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
              + +   +   ++ID Y+K G +  A++L + + E+ V SW+ +I G++     +EA 
Sbjct: 505 KSRLGLDSFVGI-ALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQ 563

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
             F +ML  GV PD  +    +  CA +  ++LGK IH  + +  +  D  + + L+DMY
Sbjct: 564 KTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMY 623

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCG++ + + IF     ++ +++N M+ G   +G GEEALK F  M+ E +  +   FL
Sbjct: 624 SKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFL 683

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            VL AC H GL  +G   F SM  + G++P+LEHYSC+VD++ R+G++ +AL ++E MP 
Sbjct: 684 AVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPF 743

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           + +  +W TLL  C+ H NV +AE     +++L+ +D   YVLLSNIYA+AGMW    ++
Sbjct: 744 EADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKL 803

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           RKMMR   +KKE G S IEI   +  F+ G+    +S+E+
Sbjct: 804 RKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEI 843



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 143/511 (27%), Positives = 252/511 (49%), Gaps = 21/511 (4%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A++LF+ + + +    N++I GY  + + +K +  ++ M R G + D  T+  VLK+C  
Sbjct: 127 AQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSS 186

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L     G +IHG  VKMGF CDV   + L+ MY+KC  + C+   F     K+ VSW+ +
Sbjct: 187 LEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAI 246

Query: 185 LRGFVECGEMGKAREVFDEMPQKD-AISWSIMIDGYRKKKGDISSARI---LFEHMPIK- 239
           + G V+  ++    E+F EM +    +S S     +R   G +S+ R+   L  H  +K 
Sbjct: 247 IAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAG-LSALRLGSQLHGH-ALKT 304

Query: 240 ----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
               D++   + +D Y K  +L  AQ+LFN +P  N+ S++ +I GYA+     EAL +F
Sbjct: 305 DFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMF 364

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
           R +   G+  D +S+ GA  ACA +     G  +H    +S    ++ V  A++DMY KC
Sbjct: 365 RLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKC 424

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
           G+L EA  +F  M  ++ +S+N +IA    NG  E+ L  F  M   G+  D+  +  VL
Sbjct: 425 GALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVL 484

Query: 416 IACSHSGLATEGYRIFQS-MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
            AC+       G  I    +K   G++  +     L+D+ S+ G +E+A  + + +  + 
Sbjct: 485 KACAGWQALNCGMEIHNRIIKSRLGLDSFVG--IALIDMYSKCGMMEKAEKLHDRLA-EQ 541

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD-DCGLYVLLSNIYADAGMWEHALRIR 533
            +  W  ++      +    A+     ++E+  D D   Y  + +  A+    E   +I 
Sbjct: 542 TVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIH 601

Query: 534 KMMRKRKIKKETGRSVIEID-----GNIKEF 559
             + K++++ +   S   +D     GN+++F
Sbjct: 602 AQIIKKELQSDAYISSTLVDMYSKCGNMQDF 632



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 132/458 (28%), Positives = 219/458 (47%), Gaps = 44/458 (9%)

Query: 75  PNTYMHNTMIRGYT--QSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
           P+T  H   IR +   QS +P K L        +       T+  + + C     L  G 
Sbjct: 3   PHTSRHLFPIRFFFNFQSKSPFKTLPISPFSSYQATPTKKKTFSHIFQECSDRKALCPGK 62

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           + H  ++   F   VFV N LI MY KC  +  A  VF+G   +D VSWN +L G+   G
Sbjct: 63  QAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRG 122

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGY-----RKKKGDI--------------------S 227
           ++G A+++FD MP++D +SW+ +I GY      +K  D+                     
Sbjct: 123 DIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLK 182

Query: 228 SARILFEH--------MPIK-----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
           S   L +H        + +K     D+++ ++++D YAK   L  + Q F+ MPE+N  S
Sbjct: 183 SCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVS 242

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           WS +I G  Q+ + +  L LF+EM   GV     +      +CA + AL LG  +H    
Sbjct: 243 WSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHAL 302

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
           ++    D+++ TA +DMYMKC +L +A+++F S+   N+ SYN +I G   +  G EAL 
Sbjct: 303 KTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALG 362

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ-SMKRHCGIEPKLEHYSCLVDL 453
            F  ++  G+  D++   G   AC+      EG ++   SMK  C  +  +   + ++D+
Sbjct: 363 MFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLC--QSNICVANAILDM 420

Query: 454 LSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN 491
             + G L +A  + E M  +  ++ W  ++ A   + N
Sbjct: 421 YGKCGALVEACLVFEEMVSRDAVS-WNAIIAAHEQNGN 457



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/436 (27%), Positives = 217/436 (49%), Gaps = 11/436 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D + + F+ + + N    + +I G  Q+ + +  L  +  M++ G+ V   T+  V ++
Sbjct: 225 LDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRS 284

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G+++HG  +K  F  DV +    + MY KC ++  A+ +F      +L S+
Sbjct: 285 CAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSY 344

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARI---LFE 234
           N ++ G+    +  +A  +F  + +     D +S S         KGD+   ++     +
Sbjct: 345 NAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMK 404

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
            +   ++   N+++D Y K G LV A  +F EM  R+  SW+ +I  + Q+GN ++ L L
Sbjct: 405 SLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSL 464

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           F  ML  G+ PD  +    + ACA   AL+ G  IH  + +SR+ +D  V  ALIDMY K
Sbjct: 465 FVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSK 524

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG +++A ++   + ++ V+S+N +I+G  +    EEA K F++M   G+  D+  +  +
Sbjct: 525 CGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATI 584

Query: 415 LIACSHSGLATEGYRIF-QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           L  C++      G +I  Q +K+    +  +   S LVD+ S+ G ++    I E  P +
Sbjct: 585 LDTCANLVTVELGKQIHAQIIKKELQSDAYIS--STLVDMYSKCGNMQDFQLIFEKAPNR 642

Query: 474 PNLALWGTLLLACRNH 489
            +   W  ++     H
Sbjct: 643 -DFVTWNAMVCGYAQH 657


>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Vitis vinifera]
          Length = 518

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 159/360 (44%), Positives = 234/360 (65%), Gaps = 1/360 (0%)

Query: 213 SIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
           + ++D Y  K G +  A ++F+ M +++ +SWN+MIDG  + G++  A  LF++M ER+ 
Sbjct: 131 TALVDMY-SKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDA 189

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
            SW+ MI G+ + G  ++AL  FREM   GV PD ++++  ++ACA +GAL LG WI+ F
Sbjct: 190 ISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINRF 249

Query: 333 MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
           + +     ++ +  +LIDMY +CG +  AR++F  M K++++S+N MI G  +NG  EEA
Sbjct: 250 VMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEA 309

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
           L+ F  M  EG   D + F G L ACSHSGL  EG + F  MKR   I P++EHY CLVD
Sbjct: 310 LEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVD 369

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
           L SRAG LE ALN++ +MPMKPN  + G+LL ACR H +V LAE +++ L E+       
Sbjct: 370 LYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGDVGLAERLMKYLCEVDPGSDSN 429

Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           YVLLSNIYA  G W+ A ++RK M+   I K+ G S IE+DG+I EFV+G+   V+++ +
Sbjct: 430 YVLLSNIYAAVGRWDGASKVRKKMKALGIHKKPGFSSIEMDGSIHEFVAGDKTHVETQNI 489



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 109/339 (32%), Positives = 172/339 (50%), Gaps = 46/339 (13%)

Query: 93  PQKALSFYVNMKRKGLLVDNYTYPFVLKACG--VLMGLVEGTEIHGEVVKMGFLCD-VFV 149
           P+ A  F   M+  G+  ++ T+  +L AC    L GL  G  IH  V K+G   + V V
Sbjct: 71  PEAAAEF-SRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTENVMV 129

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA 209
              L+ MYSKCG +  A  +F+   +++ VSWN ++ G +  GE+G+A  +FD+M ++DA
Sbjct: 130 GTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDA 189

Query: 210 ISWSIMIDGYRKKKGDISSARILFEHMPI----KDLIS------------------W--- 244
           ISW+ MI G+  KKG    A   F  M +     D ++                  W   
Sbjct: 190 ISWTSMIGGF-VKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINR 248

Query: 245 --------------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
                         NS+ID Y++ G +  A+Q+F +MP+R++ SW+ MI G+A +G+ +E
Sbjct: 249 FVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEE 308

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA-LI 349
           AL  F  M  +G RPD +S  GA++AC+  G +D G      MKR+R     I     L+
Sbjct: 309 ALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLV 368

Query: 350 DMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG 387
           D+Y + G L++A  +  +M  K N +    ++A    +G
Sbjct: 369 DLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHG 407



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 120/252 (47%), Gaps = 36/252 (14%)

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ--VGALDL 325
           P   + SW+  I  + ++G   EA   F  M   GVRP+ I+ +  +SAC    +  L  
Sbjct: 50  PIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRF 109

Query: 326 GKWIHVFMKRSRI-TMDMIVQTALIDMYMKCGSLD------------------------- 359
           G  IH ++++  + T +++V TAL+DMY KCG LD                         
Sbjct: 110 GGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCM 169

Query: 360 ------EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
                 EA  +F  M++++ IS+  MI G    G  E+AL+ F +M+  G+  D +  + 
Sbjct: 170 RNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIIS 229

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           VL AC++ G    G  I + + +    +  ++  + L+D+ SR G +  A  + E MP K
Sbjct: 230 VLAACANLGALGLGLWINRFVMKQ-DFKDNIKISNSLIDMYSRCGCIRLARQVFEQMP-K 287

Query: 474 PNLALWGTLLLA 485
            +L  W ++++ 
Sbjct: 288 RSLVSWNSMIVG 299



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 10/210 (4%)

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           LF+Q+ + +     +MI G+ +    ++AL ++  M+  G+  D  T   VL AC  L  
Sbjct: 180 LFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGA 239

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
           L  G  I+  V+K  F  ++ + N LI MYS+CG +  AR VFE    + LVSWN ++ G
Sbjct: 240 LGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVG 299

Query: 188 FVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243
           F   G   +A E F+ M ++    D +S++  +       G +      F+ M     IS
Sbjct: 300 FALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTAC-SHSGLVDEGLQFFDIMKRTRKIS 358

Query: 244 -----WNSMIDGYAKIGDLVAAQQLFNEMP 268
                +  ++D Y++ G L  A  +   MP
Sbjct: 359 PRIEHYGCLVDLYSRAGRLEDALNVIANMP 388


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 151/362 (41%), Positives = 243/362 (67%)

Query: 224 GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
           GDI++AR +F+ M   D++SW  MI GY + GD  +A++LF+ MPERN+ +WS MI GYA
Sbjct: 166 GDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYA 225

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
           ++   ++A+  F  +  +GV  +   ++G IS+CA +GAL +G+  H ++ R+++++++I
Sbjct: 226 RNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLI 285

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           + TA++DMY +CG++++A  +F  + +K+V+ +  +IAGL M+G+ E+AL  F++M  +G
Sbjct: 286 LGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKG 345

Query: 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
               D+ F  VL ACSH+G+   G  IF+SMKR  G+EP+LEHY C+VDLL RAG+L +A
Sbjct: 346 FVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKA 405

Query: 464 LNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA 523
              V  MP+KPN  +W  LL ACR H+NV + E V + L+E++ +  G YVLLSNIYA A
Sbjct: 406 EKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARA 465

Query: 524 GMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTT 583
             W+    +R+MM+ + ++K  G S+IEIDG + EF  G+    + E++E + +  +   
Sbjct: 466 NKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKTHPEIEKIERIWEDIILPK 525

Query: 584 IE 585
           I+
Sbjct: 526 IK 527



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 128/435 (29%), Positives = 212/435 (48%), Gaps = 43/435 (9%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           LKNP + LL+       +  I A +    L  + F  S+L+       T  +  A R+ +
Sbjct: 16  LKNPKLVLLECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVAS 75

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
           QI  PN +++N +IRG + S NP+ +  +Y+   R GLL DN T+PF++KAC  L     
Sbjct: 76  QIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPM 135

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G + HG+ +K GF  D +V N L+ MY+  G +  ARSVF+     D+VSW  ++ G+  
Sbjct: 136 GMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHR 195

Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK-------------------------GD 225
           CG+   ARE+FD MP+++ ++WS MI GY +                           G 
Sbjct: 196 CGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGV 255

Query: 226 ISSARIL--------FEHMPIKDLISWN-----SMIDGYAKIGDLVAAQQLFNEMPERNV 272
           ISS   L             +++ +S N     +++D YA+ G++  A  +F ++PE++V
Sbjct: 256 ISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDV 315

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
             W+ +I G A HG  ++AL+ F EM  +G  P  I+    ++AC+  G ++ G  I   
Sbjct: 316 LCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFES 375

Query: 333 MKRSR-ITMDMIVQTALIDMYMKCGSLDEARRIFYSM-TKKNVISYNVMIAGLGMNG--- 387
           MKR   +   +     ++D+  + G L +A +    M  K N   +  ++    ++    
Sbjct: 376 MKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVE 435

Query: 388 FGEEALKCFAQMETE 402
            GE   K   +M+ E
Sbjct: 436 VGERVGKILLEMQPE 450


>gi|357472867|ref|XP_003606718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507773|gb|AES88915.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 194/533 (36%), Positives = 294/533 (55%), Gaps = 45/533 (8%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           ++ A LTTN  +      S L+   T+   L++  A +LF++I Q N +    +I    +
Sbjct: 50  KLHALLTTNGYVRFNLIASNLITLYTTCGQLSI--ARKLFDKIPQTNIHRWIALIATCAR 107

Query: 90  SSNPQKALSFYVNMKRKGLLVDN--YTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV 147
                 AL  +  M+       N  +  P VLKACG +   + G ++H  V+K  F  D 
Sbjct: 108 CGFHDHALEVFSEMQTLNDQKSNSVFVIPSVLKACGHVGDRIYGEQVHCLVLKCSFEIDA 167

Query: 148 FVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK 207
           FV + LI MYSKCG            E++D                   AR+VFD M  K
Sbjct: 168 FVSSALIVMYSKCG------------EVRD-------------------ARKVFDGMVVK 196

Query: 208 DAISWSIMIDGYRKKKGDISSARILFEHMPI----KDLISWNSMIDGYAKIGDLVAAQQL 263
           D ++ + ++ GY  ++G  + A  L E+M +     ++++WN++I G+A+  D     ++
Sbjct: 197 DLVAMNAVVSGY-AQQGLPNEALSLVENMKLMGVNPNVVTWNALISGFAQKCDREMVSEI 255

Query: 264 FNEMPER----NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
           F  M E     +V SW+ ++ G+ Q+   +EA   F++ML  G  P   ++   + ACA 
Sbjct: 256 FRLMNEDRVEPDVVSWTSVLSGFVQNFRNEEAFDAFKKMLLLGFCPTSATISALLPACAT 315

Query: 320 VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVM 379
              +  GK IH +     +  D+ V++AL+DMY KCG + EAR +FY M +KN ++ N M
Sbjct: 316 EARVRFGKEIHGYALVIGVEDDLYVRSALVDMYAKCGFISEARTLFYKMPEKNTVTMNSM 375

Query: 380 IAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHC 438
           I G   +G  EEA++ F QME EG+PK D L F   L ACSH G    G R+F+ M+   
Sbjct: 376 IFGYANHGCCEEAIELFNQMEMEGVPKLDHLTFTAALTACSHVGDIELGQRLFKIMQEKY 435

Query: 439 GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVV 498
            IEP+LEHY+C+VDL  RAG+LE+A  I++SMP+KP+L +WG LL ACRNH +V LAEV 
Sbjct: 436 CIEPRLEHYACMVDLFGRAGKLEEAYGIIKSMPVKPDLFVWGALLAACRNHGHVELAEVA 495

Query: 499 VEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
            + L EL+ +  G  +LLS++YADAG W    RI++ ++K K++K  G S I+
Sbjct: 496 AKHLSELEPESAGNRLLLSSLYADAGTWGKVERIKRRIKKGKLRKLQGLSWID 548



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 3/159 (1%)

Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
           +L  GK +H  +  +      ++ + LI +Y  CG L  AR++F  + + N+  +  +IA
Sbjct: 44  SLQQGKKLHALLTTNGYVRFNLIASNLITLYTTCGQLSIARKLFDKIPQTNIHRWIALIA 103

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFL--GVLIACSHSGLATEGYRIFQSMKRHCG 439
                GF + AL+ F++M+T    K + +F+   VL AC H G    G ++   +   C 
Sbjct: 104 TCARCGFHDHALEVFSEMQTLNDQKSNSVFVIPSVLKACGHVGDRIYGEQV-HCLVLKCS 162

Query: 440 IEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
            E      S L+ + S+ GE+  A  + + M +K  +A+
Sbjct: 163 FEIDAFVSSALIVMYSKCGEVRDARKVFDGMVVKDLVAM 201


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 157/349 (44%), Positives = 230/349 (65%), Gaps = 8/349 (2%)

Query: 232 LFEHM-PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
           LF+ M P   ++S  +M+  YAK+G L  A+ LF+ +P +++  W+ M+DGY QHG P E
Sbjct: 178 LFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSE 237

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM----KRSRITMDMIVQT 346
           AL LFR+ML  GV PD +SV+ A+SA AQ+G  + G+W+H F+    +R+R+ ++  V T
Sbjct: 238 ALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGT 297

Query: 347 ALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           AL+DMY KCGSL+EA  +F  +     ++V+++N MI G  M+G   EAL+ F Q+  +G
Sbjct: 298 ALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQG 357

Query: 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
           +   D+ F+GVL ACSHSGL  EG  +F +M+   GI PK+EHY C+VDLL RAG +E+A
Sbjct: 358 LWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEA 417

Query: 464 LNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA 523
            ++V+SM  KP+ A+W +LL ACR H+N+ L + V + LV     + G YVLLSN+YA A
Sbjct: 418 FDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVGNGLANSGTYVLLSNMYAAA 477

Query: 524 GMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           G W    R+R MMR   ++KE G S +E+   + EFV+G+    +S E+
Sbjct: 478 GKWREVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDRSHPRSAEI 526



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 163/361 (45%), Gaps = 54/361 (14%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM--KRKGLLVDNYTYPFV 118
            +D A  L  +   P    + + I  ++     + AL+    M   R GLL   +T    
Sbjct: 71  RLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAHTLSAS 130

Query: 119 LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG-SEIKD 177
           L ACG L     G  +HG  VK+    + +V   L+GMY++ G    AR++F+G      
Sbjct: 131 LPACGCL---AVGRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPH 187

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMP 237
           +VS   +L  + + G++  AR +FD +P+KD + W+ M+DGY  + G  S A  LF  M 
Sbjct: 188 VVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGY-TQHGRPSEALRLFRQML 246

Query: 238 IK----DLIS------------------W---------------------NSMIDGYAKI 254
                 D +S                  W                      +++D Y K 
Sbjct: 247 RSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKC 306

Query: 255 GDLVAAQQLFNEM---PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
           G L  A  +F ++    +R+V +W+ MI+GYA HG  +EAL  F ++  QG+ P  I+ +
Sbjct: 307 GSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITFI 366

Query: 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA-LIDMYMKCGSLDEARRIFYSMTK 370
           G ++AC+  G +D G+ +   M+     +  +     ++D+  + G ++EA  +  SM  
Sbjct: 367 GVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKA 426

Query: 371 K 371
           K
Sbjct: 427 K 427



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 102/261 (39%), Gaps = 16/261 (6%)

Query: 43  EPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVN 102
           +P  +S   M         +D A  LF+ + + +    N M+ GYTQ   P +AL  +  
Sbjct: 185 DPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQ 244

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV----FVVNGLIGMYS 158
           M R G+  D  +    L A   L     G  +H  V   G    V     V   L+ MY 
Sbjct: 245 MLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYY 304

Query: 159 KCGHMGCARSVFE---GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIM 215
           KCG +  A +VF    G   +D+V+WN ++ G+   G   +A E F ++  +      I 
Sbjct: 305 KCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDIT 364

Query: 216 IDGYR---KKKGDISSARILFEHMP-----IKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
             G        G +   R LF  M      +  +  +  M+D   + G +  A  L   M
Sbjct: 365 FIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSM 424

Query: 268 PER-NVFSWSIMIDGYAQHGN 287
             + +   W+ ++     H N
Sbjct: 425 KAKPDAAMWASLLGACRLHKN 445


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 175/510 (34%), Positives = 284/510 (55%), Gaps = 12/510 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D A+R+F  +   + +  +++I  Y ++   + A+  Y  M  +G+  +  T+   L 
Sbjct: 80  SLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALG 139

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C  + GL +G  IH  ++      D  + + L+ MY KC  M  AR VFEG + +++ S
Sbjct: 140 GCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRS 199

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSI----MIDGYRKKKGDISSARILFEHM 236
           +  ++  +V+ GE  +A E+F  M + +AI  +      I G  +  G++   R +  H+
Sbjct: 200 YTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHL 259

Query: 237 PIK----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
             +    +++  N+++  Y K G  V A+++F+ M  RNV SW+ MI  YAQHGNP+EAL
Sbjct: 260 ASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEAL 319

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            LF+ M    V P  +S   A++ACA +GALD G+ IH  +  + +    + +T+L+ MY
Sbjct: 320 NLFKRM---DVEPSGVSFSSALNACALLGALDEGREIHHRVVEANLASPQM-ETSLLSMY 375

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            +CGSLD+ARR+F  M  ++  S N MIA    +G  ++AL+ + +ME EGIP D + F+
Sbjct: 376 ARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQEGIPADGITFV 435

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            VL+ACSH+ L  +     QS+    G+ P +EHY C+VD+L R+G L  A  +VE+MP 
Sbjct: 436 SVLVACSHTSLVADCRDFLQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPY 495

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           + +   W TLL  C+ H ++   E     + EL   +   YV LSN+YA A  ++ A R+
Sbjct: 496 QADAVAWMTLLSGCKRHGDLDRGERAARKVFELAPAETLPYVFLSNMYAAAKRFDDARRV 555

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
           RK M +R + +    S IEID  +  F SG
Sbjct: 556 RKEMEERGVTRPVAVSYIEIDNELHMFTSG 585



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 121/400 (30%), Positives = 201/400 (50%), Gaps = 15/400 (3%)

Query: 83  MIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMG 142
           MI    +   P +AL  +  M+ +G++ D +    ++ AC  L  L EG  +H  ++  G
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 143 FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKA----R 198
           F  D+ +   L+ MY+KCG +  A+ VFEG EIKDL +W+ ++  +   G    A    R
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYR 120

Query: 199 EVFDEMPQKDAISWSIMIDGYRK----KKGDISSARILFEHMPIKDLISWNSMIDGYAKI 254
            +  E  + + ++++  + G         G     RIL   +P  D++  +S+++ Y K 
Sbjct: 121 RMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQ-DSLLNMYLKC 179

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM-LCQGVRPDVISVMGA 313
            ++V A+++F  M  RNV S++ MI  Y Q G   EAL LF  M   + + P+  +    
Sbjct: 180 DEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATI 239

Query: 314 ISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNV 373
           + A   +G L+ G+ +H  +       +++VQ AL+ MY KCGS  EAR++F SMT +NV
Sbjct: 240 LGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNV 299

Query: 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433
           IS+  MIA    +G  +EAL  F +M+ E      + F   L AC+  G   EG  I   
Sbjct: 300 ISWTSMIAAYAQHGNPQEALNLFKRMDVE---PSGVSFSSALNACALLGALDEGREIHHR 356

Query: 434 MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           +       P++E  + L+ + +R G L+ A  +   M  +
Sbjct: 357 VVEANLASPQME--TSLLSMYARCGSLDDARRVFNRMKTR 394



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 144/271 (53%), Gaps = 7/271 (2%)

Query: 226 ISSARILFEHMPIK----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           +   R L EH+ I     D+    +++  YAK G L  A+++F  M  +++F+WS +I  
Sbjct: 46  LEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAA 105

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
           YA+ G  + A+ L+R M+ +GV P+V++   A+  CA V  L  G+ IH  +  S++  D
Sbjct: 106 YARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQD 165

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM-E 400
            ++Q +L++MY+KC  + EAR++F  M  +NV SY  MI+     G   EAL+ F++M +
Sbjct: 166 DVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSK 225

Query: 401 TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460
            E I  +   F  +L A    G   +G ++ + +    G +  +   + LV +  + G  
Sbjct: 226 VEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASR-GFDTNVVVQNALVTMYGKCGSP 284

Query: 461 EQALNIVESMPMKPNLALWGTLLLACRNHQN 491
            +A  + +SM  + N+  W +++ A   H N
Sbjct: 285 VEARKVFDSMTAR-NVISWTSMIAAYAQHGN 314


>gi|326517559|dbj|BAK03698.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 529

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 176/513 (34%), Positives = 273/513 (53%), Gaps = 49/513 (9%)

Query: 84  IRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC-------GVLMGLVEGTEIHG 136
           IR       P++A++ Y++  R G    +   PF L A         V          H 
Sbjct: 17  IRAAADQGRPRRAIALYLSSFRSG--AAHRPCPFALAAVLKSVSRLPVHTVATAAASFHA 74

Query: 137 EVVKMGFLCDVFVVNGLIGMYSK------------------------------------C 160
            ++++G L   +    L  +YS+                                     
Sbjct: 75  HLLRLGLLAHPYPHAALAHLYSRDPVAARSLLDETPPARGRAPHSLLVSRNSLLASLLRS 134

Query: 161 GHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR 220
           G +  AR++F+   ++D+VSWN ++ G  + G + +A E+FD+MP+++A SW+ +I G  
Sbjct: 135 GDLPAARALFDQMPVRDVVSWNSMVAGLAKAGRLDRAIELFDQMPERNAASWNAVICGL- 193

Query: 221 KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN-VFSWSIMI 279
              G ++ AR +FE MP++  ISW +MI GYAK GD+ AA  LF  M  +N +++W+ MI
Sbjct: 194 IAHGHLTRAREMFEQMPVRSNISWITMISGYAKAGDVQAAAGLFERMENKNDLYAWNAMI 253

Query: 280 DGYAQHGNPKEALYLFREMLCQGV--RPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337
             YAQ+G  +EA+ +F  ML   V   P+  +     SAC+Q+G L  G W+  FM    
Sbjct: 254 ACYAQNGCAREAIGVFNRMLKPHVCVLPNEKTFSSVTSACSQLGNLRFGLWVQSFMVSLG 313

Query: 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFA 397
           I +D  ++TAL+D+Y K G +D A  +F  ++K++V+SY+ MI G GMNG   EA+  F 
Sbjct: 314 IELDDHLRTALVDLYTKSGQIDRAFDLFKGLSKRDVVSYSAMIVGCGMNGKLNEAIGLFN 373

Query: 398 QMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA 457
           +M    I  + + F+G+L A +H+GL  E    F SM     I P +EHY+ +VDLL R+
Sbjct: 374 EMSDANILPNAVSFVGLLSAYNHAGLVEEARACFTSMSSKYKIRPSMEHYTIMVDLLGRS 433

Query: 458 GELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517
           G+L++A  ++  MPM+P  ++WG LLL+CR H NV L EV+     E    + G Y+LL 
Sbjct: 434 GKLDEAFQLIMQMPMQPRASVWGALLLSCRLHNNVELGEVIASKCFEQAPGESGYYILLG 493

Query: 518 NIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           NIYA A  W+   R+RK M++R + K  G S +
Sbjct: 494 NIYASANKWDKVRRLRKTMKERCLSKMPGSSWV 526



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 109/240 (45%), Gaps = 14/240 (5%)

Query: 61  NMDQAERLFNQIYQPNT-YMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV--DNYTYPF 117
           ++  A  LF ++   N  Y  N MI  Y Q+   ++A+  +  M +  + V  +  T+  
Sbjct: 229 DVQAAAGLFERMENKNDLYAWNAMIACYAQNGCAREAIGVFNRMLKPHVCVLPNEKTFSS 288

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           V  AC  L  L  G  +   +V +G   D  +   L+ +Y+K G +  A  +F+G   +D
Sbjct: 289 VTSACSQLGNLRFGLWVQSFMVSLGIELDDHLRTALVDLYTKSGQIDRAFDLFKGLSKRD 348

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQ----KDAISWSIMIDGYRKKKGDISSARILF 233
           +VS++ ++ G    G++ +A  +F+EM       +A+S+  ++  Y    G +  AR  F
Sbjct: 349 VVSYSAMIVGCGMNGKLNEAIGLFNEMSDANILPNAVSFVGLLSAY-NHAGLVEEARACF 407

Query: 234 EHMPIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFS-WSIMIDGYAQHGN 287
             M  K  I      +  M+D   + G L  A QL  +MP +   S W  ++     H N
Sbjct: 408 TSMSSKYKIRPSMEHYTIMVDLLGRSGKLDEAFQLIMQMPMQPRASVWGALLLSCRLHNN 467


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 185/534 (34%), Positives = 300/534 (56%), Gaps = 14/534 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKG--LLVDNYTYPFVL 119
           + +A+ LF++  + N    N+MI GY +  +  +       M+ +   +  D +T   VL
Sbjct: 255 LSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVL 314

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
             C     L    E+HG   + G   +  V N  I  Y++CG +  +  VF+  + K + 
Sbjct: 315 PVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVS 374

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKD-AISW----SIMIDGYRKKK---GDISSARI 231
           SWN +L G+ +  +  KA +++ +M        W    S+++   R K    G+      
Sbjct: 375 SWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFA 434

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           L   + +   I   S++  Y   G   AAQ LF+ M  R++ SW++MI GY+Q+G P EA
Sbjct: 435 LRNGLAVDPFIGI-SLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEA 493

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           + LFR+ML  G++P  I++M    AC+Q+ AL LGK +H F  ++ +T D+ V +++IDM
Sbjct: 494 INLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDM 553

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y K G +  ++RIF  + +K+V S+NV+IAG G++G G+EAL+ F +M   G+  DD  F
Sbjct: 554 YAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTF 613

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
            G+L+ACSH+GL  +G   F  M     IEPKLEHY+C+VD+L RAG ++ AL ++E MP
Sbjct: 614 TGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMP 673

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
             P+  +W +LL +CR H N+ L E V   L+EL+ +    YVL+SN++A +G W+   R
Sbjct: 674 GDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRR 733

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
           +R  M+   ++K+ G S IE+ G +  F+ G   D    ELE V +++ +  ++
Sbjct: 734 VRGRMKDIGLQKDAGCSWIEVGGKVHNFLIG---DEMLPELEEVRETWRRLEVK 784



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 129/506 (25%), Positives = 255/506 (50%), Gaps = 42/506 (8%)

Query: 30  QILAQLTTN-DLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYT 88
           QI+  + T  DL+++ F +   L+++     L +++A ++F  + + N    N++I G++
Sbjct: 121 QIIHGMATKMDLVSDVF-VGNALIAMYGKCGL-VEEAVKVFEHMPERNLVSWNSIICGFS 178

Query: 89  QSSNPQKALSFYVNM--KRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCD 146
           ++   Q++ + +  M    +  + D  T   VL  C     + +G  +HG  VK+G   +
Sbjct: 179 ENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEE 238

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
           + V N LI MYSKC  +  A+ +F+ ++ K++VSWN ++ G+    ++ +   +  +M  
Sbjct: 239 LMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQT 298

Query: 207 KDAISWSIMIDGYRKKKGD----ISSARILFEHMPIKDL-----ISW-----------NS 246
           +DA           K K D    ++   +  E   ++ L      SW           N+
Sbjct: 299 EDA-----------KMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANA 347

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
            I  Y + G L +++++F+ M  + V SW+ ++ GYAQ+ +P++AL L+ +M   G+ PD
Sbjct: 348 FIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPD 407

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
             ++   + AC+++ +L  G+ IH F  R+ + +D  +  +L+ +Y+ CG    A+ +F 
Sbjct: 408 WFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFD 467

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            M  ++++S+NVMIAG   NG  +EA+  F QM ++GI   ++  + V  ACS       
Sbjct: 468 GMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRL 527

Query: 427 GYRIFQ-SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
           G  +   ++K H  +   +   S ++D+ ++ G +  +  I + +  K ++A W  ++  
Sbjct: 528 GKELHCFALKAH--LTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREK-DVASWNVIIAG 584

Query: 486 CRNHQNVTLAEVVVEGLVE--LKADD 509
              H     A  + E ++   LK DD
Sbjct: 585 YGIHGRGKEALELFEKMLRLGLKPDD 610



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/381 (29%), Positives = 188/381 (49%), Gaps = 19/381 (4%)

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM-KRKGLLVDNYTYPFVLKACGVLM 126
           +F+++ + N +  N ++  YT++   + A+S +  +        DN+T P V+KAC  L+
Sbjct: 56  VFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLL 115

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
            L  G  IHG   KM  + DVFV N LI MY KCG +  A  VFE    ++LVSWN ++ 
Sbjct: 116 DLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIIC 175

Query: 187 GFVECGEMGKAREVFDEMPQKDA-----ISWSIMIDGYRKKKGDISSARILFEHMPIK-- 239
           GF E G + ++   F EM   +      ++  + +      + DI    +    + +K  
Sbjct: 176 GFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKG-MAVHGLAVKLG 234

Query: 240 ---DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
              +L+  NS+ID Y+K   L  AQ LF++  ++N+ SW+ MI GYA+  +     YL +
Sbjct: 235 LNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQ 294

Query: 297 EMLCQG--VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           +M  +   ++ D  +++  +  C +   L   K +H +  R  +  + +V  A I  Y +
Sbjct: 295 KMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTR 354

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG+L  + R+F  M  K V S+N ++ G   N    +AL  + QM   G+  D      +
Sbjct: 355 CGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSL 414

Query: 415 LIACS-----HSGLATEGYRI 430
           L+ACS     H G    G+ +
Sbjct: 415 LLACSRMKSLHYGEEIHGFAL 435



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 182/393 (46%), Gaps = 29/393 (7%)

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNG-LIGMYSKCGHMGCARSVFEGSEIK 176
           +L+ACG    +  G  +H  V      C+ FV+N  +I MYS CG    +R VF+    K
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEM-----PQKDAISWSIMIDGYRKKKG--DISSA 229
           +L  WN ++  +        A  +F E+      + D  +   +I   +   G  D+   
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVI---KACAGLLDLGLG 120

Query: 230 RILFEHMPIKDLIS----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
           +I+       DL+S     N++I  Y K G +  A ++F  MPERN+ SW+ +I G++++
Sbjct: 121 QIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSEN 180

Query: 286 GNPKEALYLFREMLC--QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
           G  +E+   FREML   +   PDV +++  +  CA    ++ G  +H    +  +  +++
Sbjct: 181 GFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELM 240

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF---AQME 400
           V  +LIDMY KC  L EA+ +F    KKN++S+N MI G       E+  + F    +M+
Sbjct: 241 VNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYARE---EDVCRTFYLLQKMQ 297

Query: 401 TEG--IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458
           TE   +  D+   L VL  C           +     RH G++      +  +   +R G
Sbjct: 298 TEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRH-GLQSNELVANAFIAAYTRCG 356

Query: 459 ELEQALNIVESMPMKPNLALWGTLLLACRNHQN 491
            L  +  + + M  K  ++ W  LL  C   QN
Sbjct: 357 ALCSSERVFDLMDTK-TVSSWNALL--CGYAQN 386


>gi|356541211|ref|XP_003539074.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Glycine max]
          Length = 548

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 189/533 (35%), Positives = 294/533 (55%), Gaps = 45/533 (8%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           ++ A L TN         S L+   T    L+   A +LF++I   N      +I    +
Sbjct: 48  KLHAHLVTNGFARFNVVASNLVSFYTCCGQLS--HARKLFDKIPTTNVRRWIALIGSCAR 105

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTY--PFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV 147
                 AL+ +  M+    L  NY +  P VLKACG +   + G +IHG ++K  F  D 
Sbjct: 106 CGFYDHALAVFSEMQAVQGLTPNYVFVIPSVLKACGHVGDRITGEKIHGFILKCSFELDS 165

Query: 148 FVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK 207
           FV + LI MYSKC            ++++D                   AR+VFD M  K
Sbjct: 166 FVSSSLIVMYSKC------------AKVED-------------------ARKVFDGMTVK 194

Query: 208 DAISWSIMIDGYRKKKGDISSARILFEHMPI----KDLISWNSMIDGYAKIGDLVAAQQL 263
           D ++ + ++ GY  ++G  + A  L E M +     ++++WNS+I G+++ GD     ++
Sbjct: 195 DTVALNAVVAGY-VQQGAANEALGLVESMKLMGLKPNVVTWNSLISGFSQKGDQGRVSEI 253

Query: 264 FNEM----PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
           F  M     E +V SW+ +I G+ Q+   KEA   F++ML  G  P   ++   + ACA 
Sbjct: 254 FRLMIADGVEPDVVSWTSVISGFVQNFRNKEAFDTFKQMLSHGFHPTSATISALLPACAT 313

Query: 320 VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVM 379
              + +G+ IH +   + +  D+ V++AL+DMY KCG + EAR +F  M +KN +++N +
Sbjct: 314 AARVSVGREIHGYALVTGVEGDIYVRSALVDMYAKCGFISEARNLFSRMPEKNTVTWNSI 373

Query: 380 IAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHC 438
           I G   +G+ EEA++ F QME EG+ K D L F   L ACSH G    G R+F+ M+   
Sbjct: 374 IFGFANHGYCEEAIELFNQMEKEGVAKLDHLTFTAALTACSHVGDFELGQRLFKIMQEKY 433

Query: 439 GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVV 498
            IEP+LEHY+C+VDLL RAG+L +A  ++++MP++P+L +WG LL ACRNH++V LAEV 
Sbjct: 434 SIEPRLEHYACMVDLLGRAGKLHEAYCMIKTMPIEPDLFVWGALLAACRNHRHVELAEVA 493

Query: 499 VEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
              L+EL+ +     +LLS++YADAG W    R++K ++K K++K  G S IE
Sbjct: 494 AMHLMELEPESAANPLLLSSVYADAGKWGKFERVKKRIKKGKLRKLQGLSWIE 546



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 3/159 (1%)

Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
           AL  GK +H  +  +      +V + L+  Y  CG L  AR++F  +   NV  +  +I 
Sbjct: 42  ALHAGKKLHAHLVTNGFARFNVVASNLVSFYTCCGQLSHARKLFDKIPTTNVRRWIALIG 101

Query: 382 GLGMNGFGEEALKCFAQMET-EGI-PKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439
                GF + AL  F++M+  +G+ P    +   VL AC H G    G +I   + + C 
Sbjct: 102 SCARCGFYDHALAVFSEMQAVQGLTPNYVFVIPSVLKACGHVGDRITGEKIHGFILK-CS 160

Query: 440 IEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
            E      S L+ + S+  ++E A  + + M +K  +AL
Sbjct: 161 FELDSFVSSSLIVMYSKCAKVEDARKVFDGMTVKDTVAL 199


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 180/541 (33%), Positives = 284/541 (52%), Gaps = 56/541 (10%)

Query: 85  RGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG--------TEIHG 136
           RG++     ++ +     +  +         P +  +C  +M   E          +IH 
Sbjct: 5   RGFSPEPEEEERVQSLTTLPHRWFCAQISVGPLLSGSCYCMMPNTETRCSKQEELKQIHA 64

Query: 137 EVVKMGFLCDVFVVNGLIGM---YSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
            ++K G + D + +   +      +    +  A+ VF+G +  D   WNL++RGF    E
Sbjct: 65  RMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDE 124

Query: 194 MGKAREVFDEM------------P---------------------------QKDAISWSI 214
             ++  ++  M            P                           + D  + + 
Sbjct: 125 PERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNS 184

Query: 215 MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
           +I+ Y    G+   A +LF+ +P  D +SWNS+I GYAK G +  A  LF +M E+N  S
Sbjct: 185 LINSY-AATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAIS 243

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W+ MI GY Q G  KEAL LF EM    V PD +S+  A+SACAQ+GAL+ GKWIH ++ 
Sbjct: 244 WTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLT 303

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
           ++RI MD ++   LIDMY KCG + EA  +F ++ +K+V ++  +I+G   +G G EA+ 
Sbjct: 304 KTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAIS 363

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
            F +M+  GI  + + F  VL ACS++GL  EG  IF +M+R   ++P +EHY C+VDLL
Sbjct: 364 KFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLL 423

Query: 455 SRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYV 514
           SRAG L++A   ++ MP+KPN  +WG LL ACR H+N+ L E + E L+ +     G YV
Sbjct: 424 SRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYV 483

Query: 515 LLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSG-----EIFDVQS 569
             +NI+A    W+ A   R++M+++ + K  G S I ++G   EF++G     EI  +QS
Sbjct: 484 HKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQS 543

Query: 570 E 570
           +
Sbjct: 544 K 544



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/407 (29%), Positives = 203/407 (49%), Gaps = 46/407 (11%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLN-MDQAERLFNQIYQPNTYMHNTMIRGYT 88
           QI A++    LI + + +++ L    S  + + +  A+ +F+   +P+T++ N MIRG++
Sbjct: 61  QIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFS 120

Query: 89  QSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF 148
            S  P+++L  Y  M       + YT+P +LKAC  L  L E T+IH ++ K+G+  DV+
Sbjct: 121 CSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVY 180

Query: 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKD 208
            VN LI  Y+  G+   A  +F+     D VSWN V++G+ + G+M  A  +F +M +K+
Sbjct: 181 AVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKN 240

Query: 209 AISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWN----------------------- 245
           AISW+ MI GY  + G    A  LF  M   D+   N                       
Sbjct: 241 AISWTTMISGY-VQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIH 299

Query: 246 ----------------SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
                            +ID YAK GD+  A ++F  +  ++V +W+ +I GYA HG+ +
Sbjct: 300 SYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGR 359

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA-L 348
           EA+  F EM   G++P+VI+    ++AC+  G ++ GK I   M+R       I     +
Sbjct: 360 EAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCV 419

Query: 349 IDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG---FGEE 391
           +D+  + G LDEA+R    M  K N + +  ++    ++     GEE
Sbjct: 420 VDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEE 466


>gi|356528072|ref|XP_003532629.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 183/512 (35%), Positives = 288/512 (56%), Gaps = 37/512 (7%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           MDQA +LFN + + N    N +I G+  + +   A+ F+  M           Y   L A
Sbjct: 151 MDQALKLFNAMPERNAVSSNALITGFLLNGDVDSAVDFFRTMPEH--------YSTSLSA 202

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCD--------VFVVNGLIGMYSKCGHMGCARSVFEGS 173
             ++ GLV   E+    +  G LC+        V   N LI  Y + GH+  AR +F+G 
Sbjct: 203 --LISGLVRNGELD---MAAGILCECGNGDDDLVHAYNTLIAGYGQRGHVEEARRLFDGI 257

Query: 174 E-------------IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR 220
                          +++VSWN ++  +V+ G++  ARE+FD M ++D  SW+ MI GY 
Sbjct: 258 PDDRGDGDEGQRRFRRNVVSWNSMMMCYVKAGDIVSARELFDRMVEQDTCSWNTMISGY- 316

Query: 221 KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMID 280
            +  ++  A  LF  MPI D++SWN ++ G+A+ GDL  A+  F  MP +N+ SW+ +I 
Sbjct: 317 VQISNMEEASKLFREMPIPDVLSWNLIVSGFAQKGDLNLAKDFFERMPLKNLISWNSIIA 376

Query: 281 GYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM 340
           GY ++ + K A+ LF  M  +G RPD  ++   +S C  +  L LGK IH  + +  I  
Sbjct: 377 GYEKNEDYKGAIQLFSRMQFEGERPDRHTLSSVMSVCTGLVNLYLGKQIHQLVTKIVIP- 435

Query: 341 DMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
           D  +  +LI MY +CG++ +A  +F  +   K+VI++N MI G   +G   EAL+ F  M
Sbjct: 436 DSPINNSLITMYSRCGAIVDACTVFNEIKLYKDVITWNAMIGGYASHGLAAEALELFKLM 495

Query: 400 ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
           +   I    + F+ V+ AC+H+GL  EG R F+SM    GIE ++EH++ LVD+L R G+
Sbjct: 496 KRLKIHPTYITFISVMNACAHAGLVEEGRRQFKSMINDYGIERRVEHFASLVDILGRQGQ 555

Query: 460 LEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519
           L++A++++ +MP KP+ A+WG LL ACR H NV LA V  + L+ L+ +    YVLL NI
Sbjct: 556 LQEAMDLINTMPFKPDKAVWGALLSACRVHNNVELALVAADALIRLEPESSAPYVLLYNI 615

Query: 520 YADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
           YA+ G W+ A  +R +M ++ +KK+ G S ++
Sbjct: 616 YANLGQWDDAESVRVLMEEKNVKKQAGYSWVD 647



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 175/343 (51%), Gaps = 36/343 (10%)

Query: 159 KCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDG 218
           + G +  AR++F+  + +D V+WN ++ G+V   E+ +AR++FDEMP++D +SW++++ G
Sbjct: 51  RSGRLSEARALFDSMKHRDTVTWNSMITGYVHRREIARARQLFDEMPRRDVVSWNLIVSG 110

Query: 219 YRKKKGD--ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
           Y   +G   +   R LFE MP +D +SWN++I GYAK G +  A +LFN MPERN  S +
Sbjct: 111 YFSCRGSRFVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMPERNAVSSN 170

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPD--VISVMGAISACAQVGALDLGKWIHVFMK 334
            +I G+  +G+   A+  FR M      P+    S+   IS   + G LD+   I    +
Sbjct: 171 ALITGFLLNGDVDSAVDFFRTM------PEHYSTSLSALISGLVRNGELDMAAGI--LCE 222

Query: 335 RSRITMDMI-VQTALIDMYMKCGSLDEARRIFYSMT-------------KKNVISYNVMI 380
                 D++     LI  Y + G ++EARR+F  +              ++NV+S+N M+
Sbjct: 223 CGNGDDDLVHAYNTLIAGYGQRGHVEEARRLFDGIPDDRGDGDEGQRRFRRNVVSWNSMM 282

Query: 381 AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGI 440
                 G    A + F +M    + +D   +  ++          E  ++F+ M      
Sbjct: 283 MCYVKAGDIVSARELFDRM----VEQDTCSWNTMISGYVQISNMEEASKLFREMP----- 333

Query: 441 EPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
            P +  ++ +V   ++ G+L  A +  E MP+K NL  W +++
Sbjct: 334 IPDVLSWNLIVSGFAQKGDLNLAKDFFERMPLK-NLISWNSII 375



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 110/469 (23%), Positives = 191/469 (40%), Gaps = 85/469 (18%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE---MGKAREVFD 202
           D    N +I  Y     +  AR +F+    +D+VSWNL++ G+  C     + + R +F+
Sbjct: 69  DTVTWNSMITGYVHRREIARARQLFDEMPRRDVVSWNLIVSGYFSCRGSRFVEEGRRLFE 128

Query: 203 EMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQ 262
            MPQ+D +SW+ +I GY  K G +  A  LF  MP ++ +S N++I G+   GD+ +A  
Sbjct: 129 LMPQRDCVSWNTVISGY-AKNGRMDQALKLFNAMPERNAVSSNALITGFLLNGDVDSAVD 187

Query: 263 LFNEMPE--------------RN--------------------VFSWSIMIDGYAQHGNP 288
            F  MPE              RN                    V +++ +I GY Q G+ 
Sbjct: 188 FFRTMPEHYSTSLSALISGLVRNGELDMAAGILCECGNGDDDLVHAYNTLIAGYGQRGHV 247

Query: 289 KEALYLF----------------------------------------REMLCQGVRPDVI 308
           +EA  LF                                        RE+  + V  D  
Sbjct: 248 EEARRLFDGIPDDRGDGDEGQRRFRRNVVSWNSMMMCYVKAGDIVSARELFDRMVEQDTC 307

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           S    IS   Q+  ++    +     R     D++    ++  + + G L+ A+  F  M
Sbjct: 308 SWNTMISGYVQISNMEEASKLF----REMPIPDVLSWNLIVSGFAQKGDLNLAKDFFERM 363

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
             KN+IS+N +IAG   N   + A++ F++M+ EG   D      V+  C+       G 
Sbjct: 364 PLKNLISWNSIIAGYEKNEDYKGAIQLFSRMQFEGERPDRHTLSSVMSVCTGLVNLYLGK 423

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
           +I Q + +   + P     + L+ + SR G +  A  +   + +  ++  W  ++    +
Sbjct: 424 QIHQLVTKI--VIPDSPINNSLITMYSRCGAIVDACTVFNEIKLYKDVITWNAMIGGYAS 481

Query: 489 HQNVTLAEVVVEGLVELKADDCGL-YVLLSNIYADAGMWEHALRIRKMM 536
           H     A  + + +  LK     + ++ + N  A AG+ E   R  K M
Sbjct: 482 HGLAAEALELFKLMKRLKIHPTYITFISVMNACAHAGLVEEGRRQFKSM 530



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 149/360 (41%), Gaps = 90/360 (25%)

Query: 61  NMDQAERLFNQIYQP-------------------------------NTYMHNTMIRGYTQ 89
           NM++A +LF ++  P                               N    N++I GY +
Sbjct: 321 NMEEASKLFREMPIPDVLSWNLIVSGFAQKGDLNLAKDFFERMPLKNLISWNSIIAGYEK 380

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
           + + + A+  +  M+ +G   D +T   V+  C  L+ L  G +IH  V K+  + D  +
Sbjct: 381 NEDYKGAIQLFSRMQFEGERPDRHTLSSVMSVCTGLVNLYLGKQIHQLVTKI-VIPDSPI 439

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEI-KDLVSWNLVLRGFVECGEMGKAREVFDEMPQKD 208
            N LI MYS+CG +  A +VF   ++ KD+++WN ++ G+   G   +A E+F  M    
Sbjct: 440 NNSLITMYSRCGAIVDACTVFNEIKLYKDVITWNAMIGGYASHGLAAEALELFKLM---- 495

Query: 209 AISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM- 267
                        K+  I    I F            S+++  A  G +   ++ F  M 
Sbjct: 496 -------------KRLKIHPTYITFI-----------SVMNACAHAGLVEEGRRQFKSMI 531

Query: 268 ----PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA-ISACAQVGA 322
                ER V  ++ ++D   + G  +EA+ L   M     +PD  +V GA +SAC     
Sbjct: 532 NDYGIERRVEHFASLVDILGRQGQLQEAMDLINTM---PFKPDK-AVWGALLSACR---- 583

Query: 323 LDLGKWIHVFMKRSRITMDMIVQ---------TALIDMYMKCGSLDEARRIFYSMTKKNV 373
                 +H  ++ + +  D +++           L ++Y   G  D+A  +   M +KNV
Sbjct: 584 ------VHNNVELALVAADALIRLEPESSAPYVLLYNIYANLGQWDDAESVRVLMEEKNV 637


>gi|357163369|ref|XP_003579710.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Brachypodium distachyon]
          Length = 548

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 190/554 (34%), Positives = 310/554 (55%), Gaps = 15/554 (2%)

Query: 3   TLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMS---LTSPNT 59
           TLAA + S   P+ +LL   +T   + Q+ A++    L      L++   +   L SP+ 
Sbjct: 2   TLAAGRPS--PPVATLLGRCRTARCLAQLHARIVRLGLHNHHSLLARFAAACDALASPSV 59

Query: 60  LNMDQAERLFNQI--YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF 117
                A+   + +  +     + NT++   ++ S+ + AL+ + NM R+    D +++P 
Sbjct: 60  -----ADSFLSALPSHAVPLSIRNTVLASLSRHSSLRAALAQF-NMIRRTAGPDAFSFPP 113

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           +L+AC  +     GT +H   +++G   D+FV   LI  Y +C   G AR++F+   I  
Sbjct: 114 LLRACAHVPCTSTGTALHAAAIRLGLDADLFVRTALIQFYGRCRAAGAARALFDSMTIPS 173

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMP 237
            VSW  ++  +V  GE+  ARE+FD +P ++ + W+ M+DGY  K GD+ SA  LFE MP
Sbjct: 174 DVSWTAIIIVYVNSGEIVAARELFDRIPHRNLVHWNAMVDGY-VKCGDLESAGRLFEEMP 232

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
            K   +  S+I GYAK G++  A+ LF+++ +R+VF+WS MI GYAQ+G P EA  +F E
Sbjct: 233 RKTAAAHTSLIGGYAKAGNMEGAKLLFDKLQDRDVFAWSAMISGYAQNGYPGEAFRIFNE 292

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI-VQTALIDMYMKCG 356
              Q + PD   ++  ++AC+Q+G + L +WI  ++    I ++   V   LI+M  KCG
Sbjct: 293 FHKQDICPDEPVIVALMAACSQLGNIMLARWIEGYIGSYSIDINNAHVLAGLINMNAKCG 352

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
           +++ A  +F SM  ++V SY  M+ G  ++G   +A++ F++M  EG+  D+ +F  VL 
Sbjct: 353 NMERATVLFESMPVRDVFSYCSMMQGHCLHGSANKAVELFSRMLLEGLSPDNAVFTVVLT 412

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
           AC+H+GL  E  + F  MK    I P  +HY+CLV LL R G L  A  I++SMP +P+ 
Sbjct: 413 ACNHAGLVEEAKKYFGMMKNVYSIVPSGDHYACLVSLLGRFGILRDAYEIIKSMPGEPHA 472

Query: 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
             WG LL  C    +  L ++  + L E++ D+ G YV LSNIYA+   W    +IR  M
Sbjct: 473 GSWGALLGGCILQCDTELGKIAAKKLFEIEPDNAGNYVTLSNIYANIDRWTDVSKIRAEM 532

Query: 537 RKRKIKKETGRSVI 550
            ++ + K  GR++ 
Sbjct: 533 SRKGLTKIAGRTLF 546


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 179/562 (31%), Positives = 300/562 (53%), Gaps = 70/562 (12%)

Query: 24  TTTHILQILAQLTTNDLITEPFTLSQLLMSLTS-PNTLNMDQAERLFNQIYQPNTYMHNT 82
           T  H  Q+ A +  N+L    + ++ LL  +T+ P+         LF+Q++ PN ++++ 
Sbjct: 23  TLNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPFLYSA 82

Query: 83  MIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMG 142
           +IR Y ++     ++  Y +M    +   ++T+  +     +L     G+++H      G
Sbjct: 83  LIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFS---LLKNPSLGSQLHLHAFLFG 139

Query: 143 FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFD 202
           F+ D++V N +I       HM                        +V+ G +  AR+VFD
Sbjct: 140 FVNDLYVGNTII-------HM------------------------YVKFGVLDCARKVFD 168

Query: 203 EMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQ 262
           E                                MP +D+++W  +I  YA+ GD+ +A +
Sbjct: 169 E--------------------------------MPHRDVVTWTELIVAYARSGDMDSACE 196

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           LF  +P +++ +W+ M+ GY+Q+  PK+AL  FR+M   GV  D I+++GAISACAQ+G 
Sbjct: 197 LFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGV 256

Query: 323 LDLGKWIHVFMKRSRITM--DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMI 380
                WI    + SR     ++ V +ALIDMY KCG+++EA  +F  M + NV SY+ MI
Sbjct: 257 SGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMI 316

Query: 381 AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGI 440
            G  ++G    A+K F +M   GI  + + F+G+  ACSH+G+  +G ++F +MK   G+
Sbjct: 317 VGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGV 376

Query: 441 EPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVE 500
            P  +HY+C+ DLL RAG LE+AL +V++MPM+PN  +WG LL A   H N  +AE+   
Sbjct: 377 SPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIASR 436

Query: 501 GLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI-DGNIKEF 559
            L EL+ D+ G Y+LLS  YA A  W+   R+RK+MR+++++K  G S +E  +G I EF
Sbjct: 437 SLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGIIHEF 496

Query: 560 VSGEIFDVQSEELELVIQSFVK 581
            +G++   +  E++  +   ++
Sbjct: 497 FAGDVKHPEINEIKKALDDLLQ 518


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 166/509 (32%), Positives = 281/509 (55%), Gaps = 38/509 (7%)

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           F+++   ++  +NT I G++ +S PQ++L  +  M+R+G     YT   +L A   L+ L
Sbjct: 112 FDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDL 171

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
             G +IHG ++   FL +VF+ N L  MY+K                             
Sbjct: 172 RYGKQIHGSIIVRNFLGNVFIWNALTDMYAK----------------------------- 202

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFE-----HMPIKDLIS 243
             CGE+ +AR +FD + +K+ +SW++MI GY K         +L +     HMP  D ++
Sbjct: 203 --CGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMP--DQVT 258

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
            +++I  Y + G +  A+++F+E  E+++  W+ M+ GYA++G  ++AL LF EML + +
Sbjct: 259 MSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHI 318

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
            PD  ++   +S+CA++ +L  G+ +H     + +  +++V +ALIDMY KCG +D+AR 
Sbjct: 319 EPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARS 378

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           +F  M  +NV+S+N MI G   NG  ++AL+ F  M  +    D++ F+G+L AC H   
Sbjct: 379 VFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNW 438

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             +G   F S+    G+ P L+HY+C+V+LL R G +EQA+ ++++M   P+  +W TLL
Sbjct: 439 IEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLL 498

Query: 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
             C    ++  AEV    L EL       Y++LSN+YA  G W+    +R +M+ + +KK
Sbjct: 499 SICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKK 558

Query: 544 ETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
             G S IEID  +  F S +    +SE++
Sbjct: 559 FAGFSWIEIDNEVHRFTSEDRTHPESEDI 587


>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
          Length = 489

 Score =  321 bits (822), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 154/361 (42%), Positives = 233/361 (64%), Gaps = 1/361 (0%)

Query: 218 GYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSI 277
           G   K   +  AR++F++M  K+ ++WN+MIDGY + G +  A ++F++MPER++ SW+ 
Sbjct: 106 GMYSKHSRVKKARLVFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKMFDKMPERDLISWTA 165

Query: 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337
           MI+G+ + G  +EAL  FREM   GV+PD ++++ A++AC  +GAL  G W+H ++    
Sbjct: 166 MINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQD 225

Query: 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFA 397
              ++ V  +LID+Y +CG ++ AR +F  M K+ V+S+N +I G   NG   E+L  F 
Sbjct: 226 FKNNVKVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFR 285

Query: 398 QMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA 457
           +M+ EG   D + F G L ACSH GL  EG R FQ+MKR   I P++EHY CLVDL SRA
Sbjct: 286 KMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRA 345

Query: 458 GELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT-LAEVVVEGLVELKADDCGLYVLL 516
           G LE+AL +V+SMPMKPN  + G+LL ACR H N T LAE +++ L ++       YV+L
Sbjct: 346 GRLEEALKVVQSMPMKPNEVVIGSLLAACRTHGNNTVLAERLMKHLSDVNVKGHSNYVIL 405

Query: 517 SNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
           SN+YA  G WE A ++R+ M+   +KK+ G S IEID     F++G+   V++ ++  V+
Sbjct: 406 SNMYAADGKWEGASQMRRKMKGLGLKKQPGFSSIEIDDCTHVFMAGDSAHVETADIREVL 465

Query: 577 Q 577
           +
Sbjct: 466 E 466



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 182/364 (50%), Gaps = 49/364 (13%)

Query: 88  TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE--GTEIHGEVVKMGF-L 144
           T++    +A   + +M+  G+  ++ T+  +L  CG      E  G  +HG   K+G   
Sbjct: 36  TRNGRLAEAAKEFSDMRLAGVEPNHITFIALLSGCGDFSSGSEALGDLLHGYACKLGHDR 95

Query: 145 CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM 204
             V V   ++GMYSK   +  AR VF+  E K+ V+WN ++ G++  G++  A ++FD+M
Sbjct: 96  THVMVGTAILGMYSKHSRVKKARLVFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKMFDKM 155

Query: 205 PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK----DLIS----------------- 243
           P++D ISW+ MI+G+  KKG    A   F  M I     D ++                 
Sbjct: 156 PERDLISWTAMINGF-VKKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFG 214

Query: 244 -W-----------------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
            W                 NS+ID Y + G +  A+++F++M +R V SW+ +I G+A +
Sbjct: 215 LWVHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAAN 274

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIV 344
           GN  E+L  FR+M  +G +PD ++  GA++AC+ VG ++ G ++     +  RI+  +  
Sbjct: 275 GNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEH 334

Query: 345 QTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG----FGEEALKCFAQM 399
              L+D+Y + G L+EA ++  SM  K N +    ++A    +G      E  +K  + +
Sbjct: 335 YGCLVDLYSRAGRLEEALKVVQSMPMKPNEVVIGSLLAACRTHGNNTVLAERLMKHLSDV 394

Query: 400 ETEG 403
             +G
Sbjct: 395 NVKG 398



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 134/318 (42%), Gaps = 49/318 (15%)

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV- 320
           Q  N+     + SW+  I    ++G   EA   F +M   GV P+ I+ +  +S C    
Sbjct: 15  QKLNQSTSETIVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIALLSGCGDFS 74

Query: 321 -GALDLGKWIHVF--------------------------MKRSRITMDM------IVQTA 347
            G+  LG  +H +                          +K++R+  D       +    
Sbjct: 75  SGSEALGDLLHGYACKLGHDRTHVMVGTAILGMYSKHSRVKKARLVFDYMEDKNSVTWNT 134

Query: 348 LIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407
           +ID YM+ G +D A ++F  M ++++IS+  MI G    GF EEAL  F +M+  G+  D
Sbjct: 135 MIDGYMRNGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPD 194

Query: 408 DLIFLGVLIACSHSGLATEG-----YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
            +  +  L AC++ G  + G     Y + Q  K +  +       + L+DL  R G +E 
Sbjct: 195 YVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVKVS------NSLIDLYCRCGCVEF 248

Query: 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLSNIY 520
           A  + + M  K  +  W ++++    + N   + V    + E   K D       L+   
Sbjct: 249 AREVFDKME-KRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTAC- 306

Query: 521 ADAGMWEHALRIRKMMRK 538
           +  G+ E  LR  + M++
Sbjct: 307 SHVGLVEEGLRYFQTMKR 324



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 103/216 (47%), Gaps = 10/216 (4%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A ++F+++ + +      MI G+ +    ++AL+++  M+  G+  D       L A
Sbjct: 145 VDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALNA 204

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G  +H  V+   F  +V V N LI +Y +CG +  AR VF+  E + +VSW
Sbjct: 205 CTNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSW 264

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMP 237
           N V+ GF   G   ++   F +M ++    DA++++  +       G +      F+ M 
Sbjct: 265 NSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTAC-SHVGLVEEGLRYFQTMK 323

Query: 238 IKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP 268
               IS     +  ++D Y++ G L  A ++   MP
Sbjct: 324 RDHRISPRIEHYGCLVDLYSRAGRLEEALKVVQSMP 359


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 175/520 (33%), Positives = 287/520 (55%), Gaps = 11/520 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ A  +F++I +P+    N +I G        +AL     M + G+  + +T    LKA
Sbjct: 162 LEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKA 221

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  +     G ++H  ++KM    D F+  GLI MYSKC  M  AR VF+    +D+++W
Sbjct: 222 CAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAW 281

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMP 237
           N V+ G  +  E  +A  +F  M  +    +  + S ++      + +    +I    + 
Sbjct: 282 NAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQI--HALS 339

Query: 238 IKDLISW-----NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
           +K    +     NS+ID Y K G +  A ++F E P  ++  ++ ++  YAQ G  +EAL
Sbjct: 340 LKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEAL 399

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            L+ EM  +G++PD       ++ACA + A + GK +HV + +     D+    +L++MY
Sbjct: 400 RLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMY 459

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCGS+++A   F  +  + ++S++ MI GL  +G+G+EAL+ F QM   G+P + +  +
Sbjct: 460 AKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLV 519

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            VL AC+H+GL  E    F SMK   GIEP  EHY+C++DLL RAG+LE A+ +V  MP 
Sbjct: 520 SVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPF 579

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           + N  +WG LL A R H+N+ L E   E L+ L+ +  G +VLL+NIYA  GMW+   R+
Sbjct: 580 QANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARV 639

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           R++M+  K+KKE G S +E+   +  F+ G+    +S E+
Sbjct: 640 RRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEI 679



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 134/446 (30%), Positives = 216/446 (48%), Gaps = 43/446 (9%)

Query: 107 GLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCA 166
           G+  + + +P VLKAC V   LV G ++HG VV  GF  D FV N L+ +Y+KCG  G A
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64

Query: 167 RSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKK 222
           RS+F+    + +VSWN +   +V     G+A  +F +M     + +  S S MI+     
Sbjct: 65  RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGL 124

Query: 223 KGDISSARI---LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMI 279
           +  +   +I   L +     D  S N+++D YAK+G L  A  +F+E+ + ++ SW+ +I
Sbjct: 125 EDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAII 184

Query: 280 DGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRIT 339
            G   H     AL L REM   G+ P++ ++  A+ ACA +   +LG+ +H  + +  + 
Sbjct: 185 AGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMG 244

Query: 340 MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
            D  +   LIDMY KC S+D+AR +F  M ++++I++N +I+G   N   EEA   F  M
Sbjct: 245 SDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLM 304

Query: 400 ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
            TEGI  +      VL + + +  A    R   ++    G E      + L+D   + G 
Sbjct: 305 HTEGIGFNQTTLSTVLKSIA-ALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGH 363

Query: 460 LEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519
           +E A  + E  P+  +L L+ +L+ A                                  
Sbjct: 364 VEDATRVFEESPI-VDLVLFTSLVTA---------------------------------- 388

Query: 520 YADAGMWEHALRIRKMMRKRKIKKET 545
           YA  G  E ALR+   M+ R IK ++
Sbjct: 389 YAQDGQGEEALRLYLEMQDRGIKPDS 414



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 108/433 (24%), Positives = 205/433 (47%), Gaps = 9/433 (2%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            A  LF+ I   +    N +   Y  S    +A+S + +M   G+  + ++   ++  C 
Sbjct: 63  DARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCT 122

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            L   V+G +IHG ++K+G+  D F  N L+ MY+K G +  A SVF+     D+VSWN 
Sbjct: 123 GLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNA 182

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS---ARILFEHMPIKD 240
           ++ G V      +A E+  EM +         +    K    ++     R L   +   D
Sbjct: 183 IIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMD 242

Query: 241 LISWN----SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
           + S +     +ID Y+K   +  A+ +F  MPER++ +W+ +I G++Q+   +EA  LF 
Sbjct: 243 MGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFP 302

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
            M  +G+  +  ++   + + A + A  + + IH    +S    D  V  +LID Y KCG
Sbjct: 303 LMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCG 362

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
            +++A R+F      +++ +  ++     +G GEEAL+ + +M+  GI  D  +   +L 
Sbjct: 363 HVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLN 422

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
           AC+      +G ++   + +  G    +   + LV++ ++ G +E A      +P++  +
Sbjct: 423 ACASLSAYEQGKQVHVHILKF-GFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVR-GI 480

Query: 477 ALWGTLLLACRNH 489
             W  ++     H
Sbjct: 481 VSWSAMIGGLAQH 493



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 187/387 (48%), Gaps = 18/387 (4%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           Q+ + L   D+ ++ F    L+   +  N+  MD A  +F  + + +    N +I G++Q
Sbjct: 233 QLHSSLIKMDMGSDSFLGVGLIDMYSKCNS--MDDARLVFKLMPERDMIAWNAVISGHSQ 290

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
           +   ++A S +  M  +G+  +  T   VLK+   L       +IH   +K GF  D +V
Sbjct: 291 NEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYV 350

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK-- 207
           VN LI  Y KCGH+  A  VFE S I DLV +  ++  + + G+  +A  ++ EM  +  
Sbjct: 351 VNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGI 410

Query: 208 --DAISWSIMIDGYRK----KKGDISSARIL-FEHMPIKDLISWNSMIDGYAKIGDLVAA 260
             D+   S +++        ++G      IL F  M   D+ + NS+++ YAK G +  A
Sbjct: 411 KPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFM--SDIFAGNSLVNMYAKCGSIEDA 468

Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
              F+ +P R + SWS MI G AQHG  KEAL LF++ML  GV P+ I+++  + AC   
Sbjct: 469 SCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHA 528

Query: 321 GALDLGKWIHVFMKRSRITMDMIVQTA-LIDMYMKCGSLDEARRIFYSMT-KKNVISYNV 378
           G +   K     MK       M    A +ID+  + G L+ A  +   M  + N + +  
Sbjct: 529 GLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGA 588

Query: 379 MIAGLGMN---GFGEEALKCFAQMETE 402
           ++    ++     GE+A +    +E E
Sbjct: 589 LLGAARIHKNIDLGEQAAEMLLALEPE 615


>gi|414879404|tpg|DAA56535.1| TPA: pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 544

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 182/522 (34%), Positives = 288/522 (55%), Gaps = 50/522 (9%)

Query: 73  YQPNTYMHNTMIRGY-TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVL----MG 127
           + P+ + H  +++ Y +QS   + AL +  N+ R+         P +LKA        +G
Sbjct: 18  HDPDKWAH--LVKEYASQSLVREAALVYARNLPRR--THHQPLLPVLLKAAAASSPAELG 73

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL-- 185
           L  G  +H E +K  F  D+ V   ++ MY KCG +  AR  F+    ++++S+N +L  
Sbjct: 74  L--GKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAG 131

Query: 186 -----------------------------RGFVECGEMGKAREVFDEMPQ--KDAISWSI 214
                                        RGF E G+M +AR  F+  P   +  ++W++
Sbjct: 132 YAVAGDMDGALALFGGMRSWTHVTWATLIRGFAEKGDMAEARRWFEATPPGMRTVVTWTV 191

Query: 215 MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
           ++ GY    GD+ +AR +F+ MP ++   W+SM+ GY K GD   A+ +F+ +P RN+ +
Sbjct: 192 LVQGY-VCAGDMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLVN 250

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W+ +I GYAQ G  ++AL  F  ML + V+PD  ++   +SACAQ+G+L+ GK +H F+ 
Sbjct: 251 WNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFIN 310

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
           +  I  +  V   LIDMY KCG L  AR IF SM  KN   +N MI+ L  +G  +EAL 
Sbjct: 311 QEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQSDEALH 370

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
            F QME  G   + +  L VL AC+H G   EG +IF  +  + G+E  +EHY CLVDLL
Sbjct: 371 LFFQMERSGRKPNTITVLAVLGACTHGGFVDEGLQIFNKLDAY-GVEAGVEHYGCLVDLL 429

Query: 455 SRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK----ADDC 510
            RAG+L++A  IV +M  +PN  +WG+LL ACR H++  ++ +V E ++ L     + + 
Sbjct: 430 GRAGKLKEAYEIVNNMSEEPNEVIWGSLLGACRVHRDAEMSRLVTEEILRLHSFHASSND 489

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
             Y++L+NI A +  WE A ++R+ M +R ++K  G S +E+
Sbjct: 490 AEYIMLANIMAASERWEQAEQMRRKMARRGVEKTPGCSSLEL 531



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 76/146 (52%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           + ++A  +F++I   N    N +I GY Q    ++AL  +  M ++ +  D +T   +L 
Sbjct: 232 DAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLS 291

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L +G ++H  + +     + FV+NGLI MY+KCG +  AR +F+    K+   
Sbjct: 292 ACAQLGSLEQGKKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNEC 351

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQ 206
           WN ++      G+  +A  +F +M +
Sbjct: 352 WNTMISALASHGQSDEALHLFFQMER 377


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 174/516 (33%), Positives = 295/516 (57%), Gaps = 9/516 (1%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
              R+F+++   +    NTMI GY+Q    ++++  ++ M  +    D  T   +L+ACG
Sbjct: 269 DGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACG 327

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            L  L  G  +H  ++  G+ CD    N LI MY+KCG++  ++ VF G + KD VSWN 
Sbjct: 328 HLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNS 387

Query: 184 VLRGFVECGEMGKAREVFDEMP---QKDAISWSIMIDGYRKKKGDISSARILFEHMPI-- 238
           ++  +++ G   +A ++F  M    + D++++ +M+     + GD+   + L   +    
Sbjct: 388 MINVYIQNGSFDEAMKLFKMMKTDVKPDSVTY-VMLLSMSTQLGDLHLGKELHCDLAKMG 446

Query: 239 --KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
              +++  N+++D YAK G++  + ++F  M  R++ +W+ +I       +    L +  
Sbjct: 447 FNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMIS 506

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
            M  +GV PD+ +++  +  C+ + A   GK IH  + +  +  D+ V   LI+MY KCG
Sbjct: 507 RMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCG 566

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
           SL  + ++F  M  K+V+++  +I+  GM G G++A++ F +ME  GI  D + F+ ++ 
Sbjct: 567 SLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIF 626

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
           ACSHSGL  EG   F  MK+   IEP++EHY+C+VDLLSR+  L++A + + SMP+KP+ 
Sbjct: 627 ACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDS 686

Query: 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
           ++WG LL ACR   +  +AE V E ++EL  DD G YVL+SNIYA  G W+    IRK +
Sbjct: 687 SIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSI 746

Query: 537 RKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           + R +KK+ G S +EI   +  F +G  F  Q EE+
Sbjct: 747 KARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEV 782



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/427 (30%), Positives = 223/427 (52%), Gaps = 11/427 (2%)

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           N Y+ N++IR  T +    +ALS Y   +R  L  D YT+P V+ AC  L+       IH
Sbjct: 79  NVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 138

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
             V+ MGF  D+++ N LI MY +   +  AR VFE   ++D+VSWN ++ G+   G   
Sbjct: 139 DRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWN 198

Query: 196 KAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI------LFEHMPI-KDLISWNSMI 248
           +A E++        +  S  +    +  G + S         L E + I KD+I  N ++
Sbjct: 199 EALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLL 258

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
             Y K   L+  +++F++M  R+  SW+ MI GY+Q G  +E++ LF EM+ Q  +PD++
Sbjct: 259 SMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLL 317

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           ++   + AC  +G L+ GK++H +M  S    D      LI+MY KCG+L  ++ +F  M
Sbjct: 318 TITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGM 377

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
             K+ +S+N MI     NG  +EA+K F  M+T+  P D + ++ +L   +  G    G 
Sbjct: 378 KCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKP-DSVTYVMLLSMSTQLGDLHLGK 436

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
            +   + +  G    +   + LVD+ ++ GE+  +L + E+M  + ++  W T++ +C +
Sbjct: 437 ELHCDLAKM-GFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASCVH 494

Query: 489 HQNVTLA 495
            ++  L 
Sbjct: 495 SEDCNLG 501



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/435 (29%), Positives = 234/435 (53%), Gaps = 15/435 (3%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D+A ++F ++   +    N++I GY  +    +AL  Y   +  G++ D+YT   VL+
Sbjct: 165 DLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLR 224

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           ACG L  + EG  IHG + K+G   DV V NGL+ MY K   +   R +F+   ++D VS
Sbjct: 225 ACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVS 284

Query: 181 WNLVLRGFVECGEMGKAREVFDEM-----PQKDAISWSIMIDGYRKKKGDISSARILFEH 235
           WN ++ G+ + G   ++ ++F EM     P    I+  +   G+    GD+   + + ++
Sbjct: 285 WNTMICGYSQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHL---GDLEFGKYVHDY 341

Query: 236 MPIK----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           M       D  + N +I+ YAK G+L+A+Q++F+ M  ++  SW+ MI+ Y Q+G+  EA
Sbjct: 342 MITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEA 401

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           + LF+ M+   V+PD ++ +  +S   Q+G L LGK +H  + +     +++V   L+DM
Sbjct: 402 MKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDM 460

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y KCG + ++ ++F +M  +++I++N +IA    +      L+  ++M TEG+  D    
Sbjct: 461 YAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATM 520

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           L +L  CS      +G  I   + +  G+E  +   + L+++ S+ G L  +  + + M 
Sbjct: 521 LSILPVCSLLAAKRQGKEIHGCIFK-LGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMK 579

Query: 472 MKPNLALWGTLLLAC 486
            K ++  W  L+ AC
Sbjct: 580 TK-DVVTWTALISAC 593



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 169/360 (46%), Gaps = 13/360 (3%)

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE-GSEIKDLVSWNLVLRGFVEC 191
           ++H  ++ +G    V     LI  Y+       + SVF   S   ++  WN ++R     
Sbjct: 34  KLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHN 93

Query: 192 GEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHMPI----KDLIS 243
           G   +A  ++ E      Q D  ++  +I+       D   A+ + + +       DL  
Sbjct: 94  GLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLL-DFEMAKSIHDRVLDMGFGSDLYI 152

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
            N++ID Y +  DL  A+++F EMP R+V SW+ +I GY  +G   EAL ++      GV
Sbjct: 153 GNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGV 212

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
            PD  ++   + AC  +G+++ G  IH  +++  I  D+IV   L+ MY K   L + RR
Sbjct: 213 VPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRR 272

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           IF  M  ++ +S+N MI G    G  EE++K F +M  +  P D L    +L AC H G 
Sbjct: 273 IFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKP-DLLTITSILQACGHLGD 331

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
              G  +   M    G E      + L+++ ++ G L  +  +   M  K +++ W +++
Sbjct: 332 LEFGKYVHDYMITS-GYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVS-WNSMI 389



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 69/143 (48%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           M  + ++F  +   +    NT+I     S +    L     M+ +G+  D  T   +L  
Sbjct: 467 MGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPV 526

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C +L    +G EIHG + K+G   DV V N LI MYSKCG +  +  VF+  + KD+V+W
Sbjct: 527 CSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTW 586

Query: 182 NLVLRGFVECGEMGKAREVFDEM 204
             ++      GE  KA   F EM
Sbjct: 587 TALISACGMYGEGKKAVRAFGEM 609


>gi|357119066|ref|XP_003561267.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 588

 Score =  320 bits (821), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 197/593 (33%), Positives = 300/593 (50%), Gaps = 80/593 (13%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL---MSLTSPNTLNMDQAER 67
           ++  L+ +L+  K   H+ Q  AQ+    L   P  L  L+    S++SP+         
Sbjct: 1   MEQRLLEILRSLKFRHHLWQTHAQILVRGLAANPRLLPALVSAAFSVSSPSQAAAVLRA- 59

Query: 68  LFNQIYQPNTYMHNTMIRGYTQ--SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVL 125
                    T  HNT+I   T+     P+ AL+ Y  M+   +  + +T+ F+L+AC   
Sbjct: 60  ---ASAAATTVAHNTLIERLTKLRGRGPEDALTAYTAMRAVEVPPNGFTFTFLLRACEFS 116

Query: 126 MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC---GHMGCARSVFEGSEIKDL---- 178
             L     IHG+++K GF  DV V N L+ +Y KC   G++G AR VF+    KD+    
Sbjct: 117 RILPLCRRIHGQILKCGFGRDVVVQNALLDVYHKCSNPGYVGDARQVFDEMIEKDVISWN 176

Query: 179 ---------------------------VSWNLVLRGFVECGEMGKAREVFDEMPQKDAIS 211
                                      VSWN V+  F   G+M  A+ VFD MP ++AIS
Sbjct: 177 SIVGVYMSSGDVKGAMELFEVMPERNVVSWNTVVASFARVGDMASAQAVFDRMPTRNAIS 236

Query: 212 WSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271
           W++MI GY    GD+ +AR +F     KD++SW +MI  YAKIG+L  A++LF++MP +N
Sbjct: 237 WNLMISGY-AAGGDVEAARSIFYQTDQKDVVSWTAMISAYAKIGNLDLAKELFDQMPVKN 295

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIH 330
           + SW+ MI GY  +    EAL  F+ M+ +G  RPD  +++  +SACAQ+G+ +   W+ 
Sbjct: 296 LVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSAEYCSWVS 355

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
            F++++   + + +  ALIDM+ KCG +  A+ IF  M  + VI++  MI+GLG NG   
Sbjct: 356 SFIRKNNNDLTVALGNALIDMFAKCGDVGRAQLIFSGMKSRCVITWTTMISGLGFNGQCR 415

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
           EAL  +  M  EG+  DD +F+ VL ACSH G   EG+ IF+ M    GI+P++EHY C+
Sbjct: 416 EALLVYNDMCREGVGLDDTVFIAVLAACSHGGFLHEGWSIFRQMVELHGIKPRMEHYGCI 475

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           VDLL RA                                    L E V + +VE++    
Sbjct: 476 VDLLGRA-----------------------------------ELIEYVSKKIVEIEPFSS 500

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
              VL+SN  A    W+     R +MR   ++K  G S I++D  + EF++ +
Sbjct: 501 SYQVLVSNCGALKERWDCVTDARTIMRDFGMEKVPGSSSIQVDREVHEFLAKD 553


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 180/522 (34%), Positives = 289/522 (55%), Gaps = 13/522 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A  +FN   + N  + N M+  Y Q S+  K+   +  M+  G+  + +TYP +L+
Sbjct: 295 DIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILR 354

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C     +  G +IH   +K GF  D++V   LI MYSK G +  AR + E  E +D+VS
Sbjct: 355 TCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVS 414

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK- 239
           W  ++ G+V+     +A   F EM  +D   W   I G        +  + + + + I  
Sbjct: 415 WTSMIAGYVQHDFCEEALATFKEM--QDCGVWPDNI-GLASAASACAGIKAMRQGLQIHA 471

Query: 240 ---------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
                    D+  WN++++ YA+ G    A  LF E+  ++  +W+ +I G+ Q    K+
Sbjct: 472 RVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQ 531

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
           AL +F +M   G + +V + + AISA A +  +  GK +H    ++  T +  V  ALI 
Sbjct: 532 ALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALIS 591

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           +Y KCGS+++A+ IF  M+ +N +S+N +I     +G G EAL  F QM+ EG+  +D+ 
Sbjct: 592 LYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVT 651

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
           F+GVL ACSH GL  EG   F+SM    G+ P  +HY+C+VD+L RAG+L++A   V+ M
Sbjct: 652 FIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEM 711

Query: 471 PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530
           P+  N  +W TLL AC+ H+N+ + E+  + L+EL+  D   YVLLSN YA  G W +  
Sbjct: 712 PITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRD 771

Query: 531 RIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           ++RKMM+ R I+KE GRS IE+   +  F  G+     S+++
Sbjct: 772 QVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQI 813



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 125/445 (28%), Positives = 210/445 (47%), Gaps = 12/445 (2%)

Query: 47  LSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK 106
           +  LL+ L + N L + QA ++F ++   +      M+ GY QS   ++A   Y  M   
Sbjct: 80  IGNLLIDLYAKNGL-VWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWT 138

Query: 107 GLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCA 166
            ++   Y    VL AC       +G  IH +V K  F  + FV N LI +Y   G    A
Sbjct: 139 AVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLA 198

Query: 167 RSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKK 222
             VF      D V++N ++ G  +CG    A ++FDEM     + D ++ + ++      
Sbjct: 199 ERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAAC-AS 257

Query: 223 KGDISSARILFEHMPIK----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM 278
            GD+   + L  ++       D I+  S++D Y K GD+  A  +FN     NV  W++M
Sbjct: 258 VGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLM 317

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338
           +  Y Q  +  ++  +F +M   G+ P+  +    +  C   G ++LG+ IH    ++  
Sbjct: 318 LVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGF 377

Query: 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
             DM V   LIDMY K G LD+AR+I   + K++V+S+  MIAG   + F EEAL  F +
Sbjct: 378 ESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKE 437

Query: 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458
           M+  G+  D++       AC+      +G +I   +    G    +  ++ LV+L +R G
Sbjct: 438 MQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVS-GYAADISIWNTLVNLYARCG 496

Query: 459 ELEQALNIVESMPMKPNLALWGTLL 483
             E+A ++   +  K  +  W  L+
Sbjct: 497 RSEEAFSLFREIEHKDEIT-WNGLI 520



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 121/447 (27%), Positives = 216/447 (48%), Gaps = 24/447 (5%)

Query: 79  MHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC---GVLMGLVEGTEIH 135
           +H ++ + +    NP+K LS           + +      L+AC   G    LV   EIH
Sbjct: 10  LHRSLAK-FIVPDNPEKILSLVAAKASHHRALGSADLTCALQACRGRGNRWPLV--LEIH 66

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
              V  G   D  + N LI +Y+K G +  AR VF+    +D VSW  +L G+ + G   
Sbjct: 67  ATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGK 126

Query: 196 KAREVFDEM------PQKDAIS--WSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM 247
           +A  ++ +M      P    +S   S    G    +G +  A++ ++     +    N++
Sbjct: 127 EAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQV-YKQAFCSETFVGNAL 185

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           I  Y   G    A+++F +M   +  +++ +I G+AQ G+ + AL +F EM   G+RPD 
Sbjct: 186 IALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDC 245

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           ++V   ++ACA VG L  GK +H ++ ++ ++ D I + +L+D+Y+KCG ++ A  IF  
Sbjct: 246 VTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNL 305

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
             + NV+ +N+M+   G      ++ + F QM+  GI  +   +  +L  C+ +G    G
Sbjct: 306 GDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELG 365

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
            +I  S+    G E  +     L+D+ S+ G L++A  I+E M  K ++  W +++    
Sbjct: 366 EQI-HSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILE-MLEKRDVVSWTSMIAGYV 423

Query: 488 NHQNVTLAEVVVEGLVELKA-DDCGLY 513
            H      +   E L   K   DCG++
Sbjct: 424 QH------DFCEEALATFKEMQDCGVW 444


>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 621

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 191/558 (34%), Positives = 286/558 (51%), Gaps = 90/558 (16%)

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           M++ G L D +T+P V++AC  +   + G  IHG V++MGF   + V N LIGMY+K G 
Sbjct: 33  MRKIGTLGDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLGR 92

Query: 163 MGCARSVFEGSEIK-----------------------------------DLVSWNLVLRG 187
           M  AR +F+   ++                                   +LV+W  ++  
Sbjct: 93  MRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISS 152

Query: 188 FVECGEMGKAREVFDEMPQKD--------AISWSIMID-----------------GYRK- 221
           +   G   +A E+F  M  K         A+  SI  D                 G+ + 
Sbjct: 153 YARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKIIHEYAVKGGFEEY 212

Query: 222 ------------KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269
                       K GD++ A  LF  M  K L SWN++I  +A+ G    A ++F+++  
Sbjct: 213 SFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDEALEIFSQLER 272

Query: 270 R--------NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
                    NV SWS +IDG+A  G  KEAL LFR M    +  + +++   +S CA++ 
Sbjct: 273 SGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQHAKILANAVTISTVLSLCAELA 332

Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
           AL LG+ IH  + R+ +  +++V   L++MY KCG L E   IF    +K++IS+N MI 
Sbjct: 333 ALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERKDLISWNSMIT 392

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
           G GM+G G  AL+ F QM   G   D + F+ VL +CSHSGL  EG R+F  M +   IE
Sbjct: 393 GYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLKKYRIE 452

Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEG 501
           P++EHY+C+VDLL RAG L +A  IV++MP+ PN  +WG LL +CR H N  +AE     
Sbjct: 453 PQMEHYACMVDLLGRAGLLREASEIVKNMPVAPNACVWGALLNSCRMHNNTEIAEETASH 512

Query: 502 LVELK-ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
           L  L   +  G Y+LLSNIYA +G WE + R+R   + + +KK  G+S I+++ N+  F 
Sbjct: 513 LFNLSHRETTGTYMLLSNIYAASGRWEDSARVRTSAKTKGLKKNPGQSWIKVEKNVYTFS 572

Query: 561 SG--------EIFDVQSE 570
           +G        +IF++  E
Sbjct: 573 AGNNMQRGFEQIFEILEE 590



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 155/350 (44%), Gaps = 47/350 (13%)

Query: 66  ERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVL 125
           +R+ ++  +PN     ++I  Y +S   ++A+  +  M+ KG+ V       V+  C  L
Sbjct: 132 QRMESEGMEPNLVTWTSLISSYARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADL 191

Query: 126 MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL 185
              V    IH   VK GF    FV + LI +Y K G +  A ++F   + K L SWN ++
Sbjct: 192 GAFVRAKIIHEYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALI 251

Query: 186 RGFVECGEMGKAREVFDEMPQK--------DAISWSIMIDGYRKKKGD---------ISS 228
               E G   +A E+F ++ +         + +SWS +IDG+  K  +         +  
Sbjct: 252 TSHAEAGLCDEALEIFSQLERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQH 311

Query: 229 ARILFEHMPIKDLISW-----------------------------NSMIDGYAKIGDLVA 259
           A+IL   + I  ++S                              N +++ YAK G L  
Sbjct: 312 AKILANAVTISTVLSLCAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKE 371

Query: 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
              +F +   +++ SW+ MI GY  HG    AL  F +M+  G +PD ++ +  +S+C+ 
Sbjct: 372 GHMIFEKTERKDLISWNSMITGYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSH 431

Query: 320 VGALDLGKWI-HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
            G +  G+ +    +K+ RI   M     ++D+  + G L EA  I  +M
Sbjct: 432 SGLVHEGRRLFDQMLKKYRIEPQMEHYACMVDLLGRAGLLREASEIVKNM 481



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 115/247 (46%), Gaps = 19/247 (7%)

Query: 63  DQAERLFNQI--------YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYT 114
           D+A  +F+Q+         +PN    + +I G+      ++AL  +  M+   +L +  T
Sbjct: 261 DEALEIFSQLERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQHAKILANAVT 320

Query: 115 YPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174
              VL  C  L  L  G EIHG VV+   + ++ V NGL+ MY+KCG +     +FE +E
Sbjct: 321 ISTVLSLCAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTE 380

Query: 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSAR 230
            KDL+SWN ++ G+   G    A E FD+M     + D +++  ++       G +   R
Sbjct: 381 RKDLISWNSMITGYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSC-SHSGLVHEGR 439

Query: 231 ILFEHMPIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQ 284
            LF+ M  K  I      +  M+D   + G L  A ++   MP   N   W  +++    
Sbjct: 440 RLFDQMLKKYRIEPQMEHYACMVDLLGRAGLLREASEIVKNMPVAPNACVWGALLNSCRM 499

Query: 285 HGNPKEA 291
           H N + A
Sbjct: 500 HNNTEIA 506



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 109/241 (45%), Gaps = 9/241 (3%)

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
           R M   G   D  +    I ACA +G+  LGK IH  +        + V   LI MY K 
Sbjct: 31  RRMRKIGTLGDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKL 90

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
           G + +AR +F  M+ ++ IS+N M++    N     AL+ F +ME+EG+  + + +  ++
Sbjct: 91  GRMRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLI 150

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
            + + SG   E   +F  M R  G+E   E  + ++ + +  G   +A  I+    +K  
Sbjct: 151 SSYARSGWHEEAMELFGLM-RMKGVEVSGEALAVVISICADLGAFVRA-KIIHEYAVKGG 208

Query: 476 LALW----GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
              +      L+     H +V  A  +    +E+K      +  L   +A+AG+ + AL 
Sbjct: 209 FEEYSFVKSALICVYGKHGDVNGAWNL---FLEMKNKSLASWNALITSHAEAGLCDEALE 265

Query: 532 I 532
           I
Sbjct: 266 I 266


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 175/518 (33%), Positives = 286/518 (55%), Gaps = 11/518 (2%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           +  R+F+++   N      +I G  ++   ++AL ++  M R  +  D+YT+   LKAC 
Sbjct: 169 EGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACA 228

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
               L  G EIH + +K GF    FV N L  MY+KCG +    ++FE   ++D+VSW  
Sbjct: 229 DSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTT 288

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDA----ISWSIMIDG----YRKKKGDISSARILFEH 235
           ++   V+ G+   A + F  M + D      +++ +I G     R + G+   A IL  H
Sbjct: 289 IITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALIL--H 346

Query: 236 MPIKDLIS-WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
           + +   +S  NS++  YAK G L ++  +F+EM  R++ SWS +I GY+Q G+  EA  L
Sbjct: 347 LGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFEL 406

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
              M  +G +P   ++   +SAC  +  L+ GK +H ++    +    +V +ALI+MY K
Sbjct: 407 LSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCK 466

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CGS++EA RIF +    +++S+  MI G   +G+  E +  F ++   G+  D + F+GV
Sbjct: 467 CGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGV 526

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L ACSH+GL   G+R F +M +   I P  EHY C++DLL RAG L  A +++E+MP   
Sbjct: 527 LSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHR 586

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           +  +W TLL ACR H +V       E +++L+ +  G ++ L+NIYA  G W  A  IRK
Sbjct: 587 DDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRK 646

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           +M+ + + KE G S I++   +  FV+G+    Q E++
Sbjct: 647 LMKSKGVIKEPGWSWIKVKDLVFAFVAGDRSHPQGEDI 684



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 118/463 (25%), Positives = 221/463 (47%), Gaps = 17/463 (3%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
           + L  + ++  ++ Q +  ++  DL      L +L+       T ++  A R+F+++ Q 
Sbjct: 25  IDLQVLERSNDNLSQNIHFISQTDLPESNKQLKELV------KTGHLGNARRMFDKMSQK 78

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMK-RKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           +     T+I GY  +++  +AL  + NM+   GL +D +      KACG+   +  G  +
Sbjct: 79  DEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELL 138

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           HG  VK G +  VFV + L+ MY+K G +   R VF    ++++VSW  ++ G V  G  
Sbjct: 139 HGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYN 198

Query: 195 GKAREVFDEMPQK----DAISWSIMI----DGYRKKKGDISSARILFEHMPIKDLISWNS 246
            +A   F EM +     D+ +++I +    D      G    A+ + +   +   ++ N+
Sbjct: 199 KEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVA-NT 257

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           +   Y K G L     LF +M  R+V SW+ +I    Q G  + A+  F  M    V P+
Sbjct: 258 LATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPN 317

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
             +    IS CA +  ++ G+ +H  +    +   + V+ +++ MY KCG L  +  IF+
Sbjct: 318 EYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFH 377

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            MT+++++S++ +IAG    G   EA +  + M  EG    +     VL AC +  +   
Sbjct: 378 EMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEH 437

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
           G ++  +     G+E      S L+++  + G +E+A  I ++
Sbjct: 438 GKQL-HAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDA 479



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 130/246 (52%), Gaps = 5/246 (2%)

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           DL   N  +    K G L  A+++F++M +++  SW+ +I GY    +  EAL LF+ M 
Sbjct: 48  DLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMR 107

Query: 300 CQ-GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
            + G+R D   +  A  AC     ++ G+ +H +  ++ +   + V +AL+DMY K G +
Sbjct: 108 VESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKI 167

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
            E RR+F+ M  +NV+S+  +I GL   G+ +EAL  F++M    +  D   F   L AC
Sbjct: 168 FEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKAC 227

Query: 419 SHSGLATEGYRIF-QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
           + SG    G  I  Q+MK+  G +      + L  + ++ G+LE  L + E M M+ ++ 
Sbjct: 228 ADSGALNYGREIHAQAMKK--GFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMR-DVV 284

Query: 478 LWGTLL 483
            W T++
Sbjct: 285 SWTTII 290


>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Brachypodium distachyon]
          Length = 608

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 175/499 (35%), Positives = 284/499 (56%), Gaps = 12/499 (2%)

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           P  + +N  +R +  S+ P+ AL  ++ M R  L  D YT PF+L A             
Sbjct: 80  PTAFSYNVTLR-FFASTRPRTALRLFLRMLRAALRPDAYTLPFLLLAAARAPEPPFARSA 138

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           H  + ++G       V+ L+ MYS  G    AR VF+G   +D+VSWN +++ +   G  
Sbjct: 139 HALLCRLGLQAHDHTVHSLVTMYSNLGDPLAARRVFDGIPRRDVVSWNAMMKAYERAGMA 198

Query: 195 GKAREVFDEMPQKDAISWS----IMIDGYRKKKGDISSARILFE-----HMPIKDLISWN 245
                +F +M  + A++ +     ++    +  GD+   R L E      + +  L+  +
Sbjct: 199 ADVARMFRDMIDEGAVAPNEVTVAVVLAACRDAGDLVLGRWLEEWVRSAEIEVGSLVG-S 257

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           +++  Y K G++  A+++F+ +  ++V +W+ MI GYAQ+G  KEA+ LF  M  +G  P
Sbjct: 258 ALVGMYEKCGEMTEARRVFDGIAHKDVVAWNAMITGYAQNGMSKEAIALFHSMRQEGASP 317

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D I+++G +SACA VGAL+LG  +  +     +  ++ V TAL+DMY KCG LD+A ++F
Sbjct: 318 DKITLVGVLSACAAVGALELGTELDAYASHRGLYGNVYVGTALVDMYSKCGDLDKAVQVF 377

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE-GIPKDDLIFLGVLIACSHSGLA 424
             +  KN  ++N +I GL  NG G EA++ F  M  E G+  DD+ F+GVL AC H+GL 
Sbjct: 378 GKLPCKNEATWNALICGLAFNGRGHEAIRQFEVMRNEEGLRPDDITFIGVLSACVHAGLL 437

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            +G R F S+     I PK+EHYSC+VDLL+RAG LE+A + VE +P K +  + G LL 
Sbjct: 438 KDGRRWFNSLTSEFQIIPKIEHYSCMVDLLARAGHLEEAWDFVEKIPGKADAVMLGALLA 497

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           ACR  +NV ++E V+  +++L+  +   YV+ S IYA +   + + ++R +MR+R + K 
Sbjct: 498 ACRKCKNVEVSERVINRIMQLEPSNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVSKI 557

Query: 545 TGRSVIEIDGNIKEFVSGE 563
            G S +E+ G + EF +G+
Sbjct: 558 PGCSWVEVSGKVLEFYAGD 576


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 184/570 (32%), Positives = 304/570 (53%), Gaps = 10/570 (1%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           L+  L    ++ K     LQ+       D  T+    +  L      N L+ D + +LFN
Sbjct: 213 LRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLS-DCSNQLFN 271

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
            +   N   +N +I GY +S    +AL  +  +++ GL +D  +     +AC V+ G +E
Sbjct: 272 SLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLE 331

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G ++HG  +K     ++ V N ++ MY KCG +  A  VFE    +D VSWN ++    +
Sbjct: 332 GLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQ 391

Query: 191 CGEMGKAREVFDEMPQK----DAISWSIMID---GYRKKKGDIS-SARILFEHMPIKDLI 242
            G   K   +F  M Q     D  ++  ++    G++     +    RI+   M +   +
Sbjct: 392 NGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFV 451

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
              ++ID Y+K G +  A++L + + E+ V SW+ +I G++     +EA   F +ML  G
Sbjct: 452 GI-ALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMG 510

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           V PD  +    +  CA +  ++LGK IH  + +  +  D  + + L+DMY KCG++ + +
Sbjct: 511 VDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQ 570

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
            IF     ++ +++N M+ G   +G GEEALK F  M+ E +  +   FL VL AC H G
Sbjct: 571 LIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMG 630

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
           L  +G   F SM  + G++P+LEHYSC+VD++ R+G++ +AL ++E MP + +  +W TL
Sbjct: 631 LVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTL 690

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
           L  C+ H NV +AE     +++L+ +D   YVLLSNIYA+AGMW    ++RKMMR   +K
Sbjct: 691 LSXCKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLK 750

Query: 543 KETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           KE G S IEI   +  F+ G+    +S+E+
Sbjct: 751 KEPGCSWIEIKSEVHAFLVGDKAHPRSKEI 780



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 132/502 (26%), Positives = 222/502 (44%), Gaps = 80/502 (15%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSN---PQKALS------------FYVNMKRKGLL 109
           A ++F+ + Q +T   N M+ GY    +    QK               F   M R G +
Sbjct: 96  AFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTV 155

Query: 110 VDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC--------- 160
            D  T+  VLK+C  L     G +IHG  VKMGF CDV   + L+ MY+KC         
Sbjct: 156 FDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRG 215

Query: 161 --------GHMGCARSVFEGSEIK-----DLVSWNLVLRGFVECGEMGK-AREVFDEMPQ 206
                      G       G  +K     D+V     L  +++C  +   + ++F+ +P 
Sbjct: 216 GLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPN 275

Query: 207 KDAISWSIMIDGYRKK-----------------------------------KGDISSARI 231
            +  S++ +I GY +                                    KGD+   ++
Sbjct: 276 HNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQV 335

Query: 232 ---LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNP 288
                + +   ++   N+++D Y K G LV A  +F EM  R+  SW+ +I  + Q+GN 
Sbjct: 336 HGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNE 395

Query: 289 KEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTAL 348
           ++ L LF  ML  G+ PD  +    + ACA   AL+ G  IH  + +SR+ +D  V  AL
Sbjct: 396 EKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIAL 455

Query: 349 IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD 408
           IDMY KCG +++A ++   + ++ V+S+N +I+G  +    EEA K F++M   G+  D+
Sbjct: 456 IDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDN 515

Query: 409 LIFLGVLIACSHSGLATEGYRIF-QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467
             +  +L  C++      G +I  Q +K+    +  +   S LVD+ S+ G ++    I 
Sbjct: 516 FTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYIS--STLVDMYSKCGNMQDFQLIF 573

Query: 468 ESMPMKPNLALWGTLLLACRNH 489
           E  P + +   W  ++     H
Sbjct: 574 EKAPNR-DFVTWNAMVCGYAQH 594



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 134/570 (23%), Positives = 234/570 (41%), Gaps = 88/570 (15%)

Query: 75  PNTYMHNTMIRGYT--QSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
           P+T  H   IR +   QS +P K L        +       T+  + + C     L  G 
Sbjct: 3   PHTSRHLFPIRFFFNFQSKSPFKTLPISPFSSYQATPTKKKTFSHIFQECSDRKALCPGK 62

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           + H  ++   F   VFV N LI MY KC  +G A  VF+G   +D VSWN +L G+   G
Sbjct: 63  QAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYAGRG 122

Query: 193 EMGKAREVFDEMPQK-------------------DAISWSIMI---DGYRKKKGDISSAR 230
           ++G A+++FD MP                     D  ++++++          G I    
Sbjct: 123 DIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHG 182

Query: 231 ILFEHMPIKDLISWNSMIDGYAKI----GDLVAAQQLFNEMPERNV-------------F 273
           +  +     D+++ ++++D YAK      DL    +LF EM +  V             F
Sbjct: 183 LAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHALKTDF 242

Query: 274 SWSIMI-----DGYAQHGNPKE--------------------------------ALYLFR 296
              ++I     D Y +  N  +                                AL +FR
Sbjct: 243 GTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFR 302

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
            +   G+  D +S+ GA  ACA +     G  +H    +S    ++ V  A++DMY KCG
Sbjct: 303 LLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCG 362

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
           +L EA  +F  M  ++ +S+N +IA    NG  E+ L  F  M   G+  D+  +  VL 
Sbjct: 363 ALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLK 422

Query: 417 ACSHSGLATEGYRIFQS-MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
           AC+       G  I    +K   G++  +     L+D+ S+ G +E+A  + + +  +  
Sbjct: 423 ACAGWQALNCGMEIHNRIIKSRMGLDSFVG--IALIDMYSKCGMMEKAEKLHDRLA-EQT 479

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKAD-DCGLYVLLSNIYADAGMWEHALRIRK 534
           +  W  ++      +    A+     ++E+  D D   Y  + +  A+    E   +I  
Sbjct: 480 VVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHA 539

Query: 535 MMRKRKIKKETGRSVIEID-----GNIKEF 559
            + K++++ +   S   +D     GN+++F
Sbjct: 540 QIIKKELQSDAYISSTLVDMYSKCGNMQDF 569


>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 2000

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 195/564 (34%), Positives = 293/564 (51%), Gaps = 70/564 (12%)

Query: 84  IRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGF 143
           I GY Q+    +A+  ++ +    +  +  T+  V++AC  L     G  + G +VK G+
Sbjct: 156 ISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMSVLGLIVKTGY 215

Query: 144 LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDE 203
             D+ V N LI +  + G +  AR VF+  E KD+VSW  +L  +VE  E+G+AR +FDE
Sbjct: 216 EHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDELGEARRIFDE 275

Query: 204 MPQKDAISWSIMI-----DGYRKK-------------KGDIS----------SARILFEH 235
           MPQ++ +SWS MI      GY ++             K +IS          S   L   
Sbjct: 276 MPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSALASVEALQAG 335

Query: 236 MPI----------KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
           M I          KD+   +S+ID Y K G+    + LF+ + E+N+ SW+ M+ GY+ +
Sbjct: 336 MNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSLN 395

Query: 286 GNPKEALYL-------------------------------FREMLCQGVRPDVISVMGAI 314
           G+ +EA YL                               F EM+  G  P+  +    +
Sbjct: 396 GHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLL 455

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
            ACA   +LD GK +H  + +  I  D  V TAL DMY K G ++ ++++F  M KKN +
Sbjct: 456 CACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPKKNEV 515

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQME-TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433
           S+  MI GL  +G  EE+L  F +ME T  I  ++++FL VL ACSHSGL  +G   F S
Sbjct: 516 SWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLFACSHSGLVDKGLWYFNS 575

Query: 434 MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT 493
           M+   G++PK  H++C+VD+LSRAG L +A   + SMP +P    W  LL  C+ ++N  
Sbjct: 576 MEAVYGLKPKGRHFTCVVDMLSRAGRLFEAEEFIYSMPFQPETNAWAALLSGCKTYKNEE 635

Query: 494 LAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEID 553
           LAE V   L E+   +C  YVLLSNIYA AG W   L++RK+M+ + +KK  G S +EI 
Sbjct: 636 LAERVAGKLWEMAEKNCAGYVLLSNIYASAGRWRDVLKVRKLMKAKGLKKSGGCSWVEIR 695

Query: 554 GNIKEFVSGEIFDVQSEELELVIQ 577
             +  F S +    QS E+  +++
Sbjct: 696 DRVHSFYSEDGAHSQSAEIYEILE 719



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 169/353 (47%), Gaps = 52/353 (14%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           + +A R+F+++ Q N    + MI  Y QS  P+++L  +  M ++G   +   +  +L A
Sbjct: 266 LGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSA 325

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
              +  L  G  IHG V K+GF  DVFV + LI MY KCG     R +F+    K++VSW
Sbjct: 326 LASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSW 385

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKG-----DISSARILFEHM 236
           N ++ G+   G M +A+ +F+ MP ++ +SWS +I G+   +      ++ +  IL   +
Sbjct: 386 NAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEI 445

Query: 237 PIKDLIS---------------------------------WNSMIDGYAKIGDLVAAQQL 263
           P K   S                                   ++ D YAK GD+ +++++
Sbjct: 446 PNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKV 505

Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM-LCQGVRPDVISVMGAISACAQVGA 322
           FN MP++N  SW+ MI G A+ G  +E+L LF EM     + P+ +  +  + AC+  G 
Sbjct: 506 FNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLFACSHSGL 565

Query: 323 LDLGKW-------IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           +D G W       ++    + R        T ++DM  + G L EA    YSM
Sbjct: 566 VDKGLWYFNSMEAVYGLKPKGRHF------TCVVDMLSRAGRLFEAEEFIYSM 612



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 176/389 (45%), Gaps = 66/389 (16%)

Query: 127 GLV-EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL 185
           GL+ +G+ +H  + K G   + ++   L+ MY                         L  
Sbjct: 35  GLIRDGSALHAHLFKTGISSEQYISIKLLIMY-------------------------LNY 69

Query: 186 RGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWN 245
           R   E  ++ K  + FD +     IS ++       ++G++  AR LF+ MP  + ISW 
Sbjct: 70  RKSAEADQISKDFDGFDLVVHNCMISANV-------QRGNLDEARKLFDEMPQTNEISWT 122

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           ++I G+ K G +  +   F   P +NV SW+  I GY Q+G   EA+ LF ++L   V+P
Sbjct: 123 ALISGFMKYGRVRESMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKP 182

Query: 306 DVISVMGAISACAQVGALDLGKWI-----------HVFMKRSRITM-------------- 340
           + ++    + ACA +G   LG  +            + +  S IT+              
Sbjct: 183 NKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVF 242

Query: 341 ------DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
                 D++  TA++D+Y++   L EARRIF  M ++N +S++ MIA    +G+ EE+L+
Sbjct: 243 DRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLR 302

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
            F +M  EG   +   F  +L A +       G  I   + +  G E  +   S L+D+ 
Sbjct: 303 LFCRMIQEGFKPNISCFSSILSALASVEALQAGMNIHGHVTK-IGFEKDVFVSSSLIDMY 361

Query: 455 SRAGELEQALNIVESMPMKPNLALWGTLL 483
            + GE +    + +++ ++ N+  W  ++
Sbjct: 362 CKCGETKDGRFLFDTI-LEKNMVSWNAMV 389



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 109/248 (43%), Gaps = 32/248 (12%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +M++A+ LFN +   N    + +I G+       +    +  M   G + +  T+  +L 
Sbjct: 397 HMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLLC 456

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC     L +G  +HG++VK+G  CD +V   L  MY+K G +  ++ VF     K+ VS
Sbjct: 457 ACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPKKNEVS 516

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILF--EHMPI 238
           W  +++G  E G   ++  +F+EM +  +I+             ++    +LF   H  +
Sbjct: 517 WTAMIQGLAESGLAEESLTLFEEMEKTSSIA-----------PNEVMFLAVLFACSHSGL 565

Query: 239 KDLISW--NSM----------------IDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMI 279
            D   W  NSM                +D  ++ G L  A++    MP +    +W+ ++
Sbjct: 566 VDKGLWYFNSMEAVYGLKPKGRHFTCVVDMLSRAGRLFEAEEFIYSMPFQPETNAWAALL 625

Query: 280 DGYAQHGN 287
            G   + N
Sbjct: 626 SGCKTYKN 633


>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
 gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
          Length = 551

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 157/425 (36%), Positives = 258/425 (60%), Gaps = 3/425 (0%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D    N L+  +   G    AR +F    ++D+VSWN ++ G  + G + +A+ VF  MP
Sbjct: 79  DAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP 138

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-DLISWNSMIDGYAKIGDLVAAQQLF 264
            ++++SW+ M+ G+   + D+S+A   F + P K D + W +M+ GY  IG++V A + F
Sbjct: 139 VRNSVSWNAMVSGFACSR-DMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYF 197

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGAL 323
             MP RN+ SW+ ++ GY ++ +  +AL LFR M+ +  V+P+  ++   +  C+ + AL
Sbjct: 198 EAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSAL 257

Query: 324 DLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383
             GK IH +  +  ++ ++ V T+L+ MY KCG L  A ++F  M  ++V+++N MI+G 
Sbjct: 258 GFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGY 317

Query: 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443
             +G G+EA+  F +M+ EG+  + + F+ VL AC H+GL   G R F+ M+   GIEP+
Sbjct: 318 AQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPR 377

Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLV 503
           ++HYSC+VDLL RAG+LE+A++++ SMP +P+ + +GTLL ACR ++N+  AE+    L+
Sbjct: 378 VDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLI 437

Query: 504 ELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           E      G YV L+NIYA A  W+   R+R+ M+   + K  G S IEI G + EF S +
Sbjct: 438 EKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSND 497

Query: 564 IFDVQ 568
               Q
Sbjct: 498 RLHPQ 502



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 150/304 (49%), Gaps = 14/304 (4%)

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMI 248
           V  G++  A E F   P+K   +++ ++ GY +  G ++ AR LF+ +P  D +S+N+++
Sbjct: 28  VRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLL 87

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV- 307
             +   GD   A++LF  MP R+V SW+ M+ G ++ G  +EA  +F   L   VR  V 
Sbjct: 88  SCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVF---LAMPVRNSVS 144

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
            + M +  AC++    D+      + + +    D ++ TA++  YM  G++ +A   F +
Sbjct: 145 WNAMVSGFACSR----DMSA-AEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEA 199

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKDDLIFLGVLIACSHSGLATE 426
           M  +N++S+N ++AG   N   ++AL+ F  M  E  +  +      VL+ CS+      
Sbjct: 200 MPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGF 259

Query: 427 GYRIFQ-SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
           G +I Q  MK    +   L   + LV +  + G+L  A  +   M  + ++  W  ++  
Sbjct: 260 GKQIHQWCMK--LPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR-DVVAWNAMISG 316

Query: 486 CRNH 489
              H
Sbjct: 317 YAQH 320



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 157/380 (41%), Gaps = 54/380 (14%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           N L+S    S       ++ A +   D+++    +S L  S        +++A+ +F  +
Sbjct: 84  NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGA------VEEAKAVFLAM 137

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
              N+   N M+ G+  S +   A  ++ N   KG                         
Sbjct: 138 PVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKG------------------------- 172

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
                        D  +   ++  Y   G++  A   FE   +++LVSWN V+ G+V+  
Sbjct: 173 -------------DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNS 219

Query: 193 EMGKAREVFDEM-------PQKDAISWSIMIDGYRKKKGDISSARILFEHMPI-KDLISW 244
               A  +F  M       P    +S  ++        G           +P+ ++L   
Sbjct: 220 HADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVG 279

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
            S++  Y K GDL +A +LF EM  R+V +W+ MI GYAQHG+ KEA+ LF  M  +GV 
Sbjct: 280 TSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVE 339

Query: 305 PDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
           P+ I+ +  ++AC   G  D G +      +   I   +   + ++D+  + G L+ A  
Sbjct: 340 PNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVD 399

Query: 364 IFYSMT-KKNVISYNVMIAG 382
           +  SM  + +  +Y  ++A 
Sbjct: 400 LIRSMPFEPHPSAYGTLLAA 419



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 13/182 (7%)

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           + T  +   ++ G L  A   F S  +K   +YN ++AG      G  A    A+   + 
Sbjct: 19  LSTVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYA-RALGRLA---DARHLFDR 74

Query: 404 IPKDDLIFLGVLIACSH-SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
           IP  D +    L++C   SG A    R+F SM         +  ++ +V  LS++G +E+
Sbjct: 75  IPTPDAVSYNTLLSCHFASGDADGARRLFASMPVR-----DVVSWNTMVSGLSKSGAVEE 129

Query: 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522
           A  +  +MP++ N   W  ++      ++++ AE       E    D  L+  + + Y D
Sbjct: 130 AKAVFLAMPVR-NSVSWNAMVSGFACSRDMSAAEEWFRNAPE--KGDAVLWTAMVSGYMD 186

Query: 523 AG 524
            G
Sbjct: 187 IG 188


>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 499

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 179/548 (32%), Positives = 297/548 (54%), Gaps = 69/548 (12%)

Query: 9   FSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERL 68
            +L + L S+ +  ++  H+ QI A     DL      L ++L       + ++  A+RL
Sbjct: 13  LALASILASIAENCQSMNHLKQIHAHSLLTDLHNHSVILGKMLRFAAVSPSGDLPYAQRL 72

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           F+Q+ QPNT+ +NT+IRGY +SS+P   ++ +  M++  +  D +T+ F++KA   +  +
Sbjct: 73  FDQMPQPNTFFYNTIIRGYAKSSSPSYCVNLFNQMRQNHVDPDEFTFNFLIKARSRVHKV 132

Query: 129 ------VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
                 +E  EIHG V K GF                C H+                   
Sbjct: 133 HNFPSTLECDEIHGAVFKYGF----------------CSHL------------------- 157

Query: 183 LVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLI 242
                FV+                      + +I+ Y  K    ++ R+  E + + D++
Sbjct: 158 -----FVQ----------------------NALINLYAVKGSPAAAWRVFNETVGV-DVV 189

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
           SW+ ++  + + G+L  A+Q+F++MPE++V SW+ M+ GY++    +EAL LF EM   G
Sbjct: 190 SWSGLVLAHVRGGELELARQVFDDMPEKDVVSWTAMVSGYSKANCSREALELFWEMSDAG 249

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           +RPD ++++  ISAC  +G ++ G  +H ++  +     + +  ALI+MY KCG +D A 
Sbjct: 250 IRPDEVTIVSVISACTNLGDVETGMNVHSYINENGFGWMVSLCNALINMYAKCGCVDRAW 309

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
           R+F +M +K++I++N MI+    +G+ E+A + F+ M   GI  D + FL +LIA +H G
Sbjct: 310 RVFNNMKRKSLITWNSMISACANHGYAEDAFELFSCMLNSGIAPDGITFLALLIAYTHKG 369

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
           L  EGYR+FQ M+R  GIE  +EHY C+VD+L RAG LE+A  ++ +MP+  N  +WG L
Sbjct: 370 LVDEGYRLFQIMERDYGIEASIEHYGCIVDMLGRAGRLEEAYELIVTMPIPSNDIVWGAL 429

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
           L ACR + +V + E VV+ L+ELK D+ G Y+LL +IY  +G    A  IR+ M++    
Sbjct: 430 LAACRIYGDVNMGERVVKKLLELKPDEGGYYILLRDIYVASGRTAEANHIRQAMQESGAM 489

Query: 543 KETGRSVI 550
           K  G S +
Sbjct: 490 KNPGYSWV 497


>gi|224090799|ref|XP_002309086.1| predicted protein [Populus trichocarpa]
 gi|222855062|gb|EEE92609.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 175/519 (33%), Positives = 291/519 (56%), Gaps = 17/519 (3%)

Query: 62  MDQAERLFNQI--YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVL 119
           M+QA  + N+   Y  N + +N +I G+  +  PQ  L  Y  M++ G+L D YT+P ++
Sbjct: 8   MNQALLVLNRTADYARNVFAYNALISGFVLNGLPQDGLGAYEEMRQAGVLPDKYTFPCLI 67

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           K    +M + +  +IHG V K+G   D++V + L+  Y K   M  AR +F+    +D+V
Sbjct: 68  KGLCEVMEVFQVKKIHGLVRKLGLDLDMYVGSSLVSSYLKSELMKEARELFDEIPDRDVV 127

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK---KKGDISSARILFEHM 236
            WN ++ G+ + G   +A  V  EM Q+  +     + G       +GD  + R++   M
Sbjct: 128 LWNSMVNGYAQIGRFDEALGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFDNGRLVHGFM 187

Query: 237 PIKDLISW----NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
                 S     N++ID Y K   +V A ++F  M E+++FSW+ ++       +    L
Sbjct: 188 IKMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEKDIFSWNSILSANELCSDHDGTL 247

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM--------KRSRITMDMIV 344
            LF  ML  GV+ D++++   + AC+ + AL  G+ IH +M          S    ++  
Sbjct: 248 RLFDRMLGDGVQLDLVTITTILPACSHLAALVHGREIHGYMIVNGFVKDGESENMYNLQT 307

Query: 345 QTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGI 404
             AL+DMY KCGS+ +A  +FY+M+ ++  S+N+MI G GM+G+G EAL  F+ M   G+
Sbjct: 308 INALMDMYAKCGSMRDAGMVFYNMSNRDTASWNIMIMGYGMHGYGNEALYMFSDMCKSGL 367

Query: 405 PKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL 464
             +++ F+GVL+ACSH+G  ++G +    M+   G+ P ++HY+C++D+L RAG+LE+A 
Sbjct: 368 KPNEITFVGVLLACSHAGFISQGIKFLGEMELKHGVVPTIQHYTCVIDMLGRAGQLEEAY 427

Query: 465 NIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524
            +  +MP++ N  +W  LL AC+ + NV LAEV  + + EL    CG YVL+SN Y  AG
Sbjct: 428 KLAVTMPIQTNPVVWRALLAACQLYGNVDLAEVAAQKVFELNPAHCGNYVLMSNAYVAAG 487

Query: 525 MWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
            ++  L IR  MR++ +KK  G S IE+   +  F++G+
Sbjct: 488 RYQEVLDIRHTMRQQDVKKTPGCSWIELKNGMNTFINGD 526


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 173/532 (32%), Positives = 307/532 (57%), Gaps = 9/532 (1%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A RLF  + + +    N MI G  Q+    +AL  + +M R G   D+ T   +L A
Sbjct: 293 LDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPA 352

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
              L GL +G E+HG +++     D F+V+ L+ +Y KC  +  AR++++ +   D+V  
Sbjct: 353 LTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIG 412

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS--------ARILF 233
           + V+ G+V  G   KA ++F  + ++     ++ +         IS+          +L 
Sbjct: 413 STVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLR 472

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
                K  +  ++++D YAK G L  +  +F++M  ++  +W+ MI  ++Q+G P+EAL 
Sbjct: 473 NAYEGKCYVE-SALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALD 531

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           LFR+M  +G++ + +++  A+SACA + A+  GK IH  + +  I  D+  ++ALIDMY 
Sbjct: 532 LFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYA 591

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCG+++ A R+F  M  KN +S+N +I+  G +G  +E++    +M+ EG   D + FL 
Sbjct: 592 KCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLA 651

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           ++ AC+H+GL  EG ++FQ M +   I P++EH++C+VDL SR+G L++A+  +  MP K
Sbjct: 652 LISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFK 711

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
           P+  +WG LL ACR H+NV LA++  + L +L   + G YVL+SNI A AG W+   ++R
Sbjct: 712 PDAGIWGALLHACRVHRNVELADIASQELFKLDPGNSGYYVLMSNINAVAGRWDGVSKVR 771

Query: 534 KMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
           ++M+  KI K  G S ++++ +   FV+ +    +SE++   +++ ++   E
Sbjct: 772 RLMKDNKILKIPGYSWVDVNNSSHLFVASDKSHPESEDIYTSLKALLQELRE 823



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 138/486 (28%), Positives = 237/486 (48%), Gaps = 12/486 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +  A   F+ +   +  + N M+ GY ++ +   A+  + NM+  G   +  T    L  
Sbjct: 192 LRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSV 251

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C     L+ G ++H   VK G   +V V N L+ MY+KC  +  A  +FE     DLV+W
Sbjct: 252 CAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTW 311

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR-------ILFE 234
           N ++ G V+ G + +A  +F +M +  A   S+ +        D++  +        +  
Sbjct: 312 NGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIR 371

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
           +    D    ++++D Y K  D+  A+ L++     +V   S +I GY  +G  ++AL +
Sbjct: 372 NCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQM 431

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           FR +L Q ++P+ ++V   + ACA + AL LG+ IH ++ R+       V++AL+DMY K
Sbjct: 432 FRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAK 491

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG LD +  IF  M+ K+ +++N MI+    NG  +EAL  F QM  EGI  +++     
Sbjct: 492 CGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSA 551

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L AC+       G  I   + +   I+  +   S L+D+ ++ G +E AL + E MP K 
Sbjct: 552 LSACASLPAIYYGKEIHGVIIKG-PIKADIFAESALIDMYAKCGNMELALRVFEFMPDK- 609

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLSNIYADAGMWEHALRI 532
           N   W +++ A   H  V  +   +  + E   K D      L+S   A AG+ E  L++
Sbjct: 610 NEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISAC-AHAGLVEEGLQL 668

Query: 533 RKMMRK 538
            + M K
Sbjct: 669 FQCMTK 674



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 144/532 (27%), Positives = 252/532 (47%), Gaps = 58/532 (10%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNM--KRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEV 138
           N +IRG+T + +   A+ FYV M         D +T P+V+K+C  L  +  G  +H   
Sbjct: 108 NWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHRTA 167

Query: 139 VKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAR 198
              G   DV+V + LI MYS  G +  AR  F+G   +D V WN+++ G+++ G++G A 
Sbjct: 168 RATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAV 227

Query: 199 EVFDEM------PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-----DLISWNSM 247
            +F  M      P    ++  + +      + D+ S  +    + +K     ++   N++
Sbjct: 228 RLFRNMRVSGCEPNFATLACFLSVCA---AEADLLSG-VQLHSLAVKCGLEQEVAVANTL 283

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           +  YAK   L  A +LF  +P  ++ +W+ MI G  Q+G   EAL LF +ML  G RPD 
Sbjct: 284 LSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDS 343

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           ++++  + A   +  L  GK +H ++ R+ + MD  + +AL+D+Y KC  +  AR ++ +
Sbjct: 344 VTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDA 403

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS-----G 422
               +V+  + +I+G  +NG  E+AL+ F  +  + I  + +    VL AC+       G
Sbjct: 404 ARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLG 463

Query: 423 LATEGYRIFQSMKRHCGIEP------------KLEHY-------------SCLVDLLSRA 457
               GY +  + +  C +E              L HY             + ++   S+ 
Sbjct: 464 QEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQN 523

Query: 458 GELEQALNIVESMPM---KPNLALWGTLLLACRNHQNVTLAE----VVVEGLVELKADDC 510
           GE ++AL++   M M   K N     + L AC +   +   +    V+++G   +KAD  
Sbjct: 524 GEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKG--PIKADIF 581

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMR-KRKIKKETGRSVIEIDGNIKEFVS 561
               L+ ++YA  G  E ALR+ + M  K ++   +  S     G +KE VS
Sbjct: 582 AESALI-DMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVS 632



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 165/368 (44%), Gaps = 18/368 (4%)

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCD---VFVVNGLIGMYSKCGHMGCARSVFEG-- 172
           +L+ C     L  G +IH   V  G L +   + +   L+GMY        A +VF    
Sbjct: 38  LLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFSALP 97

Query: 173 -SEIKDLVSWNLVLRGFVECGEMGKAREVFDEM------PQKDAISWSIMIDGYRKKKGD 225
            +     + WN ++RGF   G    A   + +M      P  DA +   ++       G 
Sbjct: 98  RAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSC-AALGA 156

Query: 226 ISSARILFEHMPIKDLIS----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           +S  R++        L S     +++I  Y+  G L  A+  F+ MP R+   W++M+DG
Sbjct: 157 VSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDG 216

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
           Y + G+   A+ LFR M   G  P+  ++   +S CA    L  G  +H    +  +  +
Sbjct: 217 YIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQE 276

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
           + V   L+ MY KC  LD+A R+F  + + +++++N MI+G   NG  +EAL  F  M  
Sbjct: 277 VAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLR 336

Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
            G   D +  + +L A +      +G  +   + R+C +       S LVD+  +  ++ 
Sbjct: 337 SGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNC-VHMDAFLVSALVDIYFKCRDVR 395

Query: 462 QALNIVES 469
            A N+ ++
Sbjct: 396 TARNLYDA 403


>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 664

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 181/574 (31%), Positives = 314/574 (54%), Gaps = 36/574 (6%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL--NMDQAERLFNQI 72
            +SL+   K T  +  + A +    +++     S++   L S ++L  + D +  +F   
Sbjct: 32  FISLIHTCKDTVSLRLVHAHILRRGVLS-----SRVAAQLVSCSSLLKSPDYSLSIFRNS 86

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
            + N ++ N +IRG T+++  + ++  ++ M   G+  D  T+PFVLK+   L     G 
Sbjct: 87  EERNPFVFNALIRGLTENARFECSVRHFILMLTLGVKPDRLTFPFVLKSNSKLGFRWLGR 146

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
            +H   +K    CD FV   L+ MY+K G +  A  VFE                     
Sbjct: 147 ALHAATLKNFVDCDSFVRVSLVDMYAKTGQLNHAFQVFE--------------------- 185

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA 252
                 E  D + ++  + W+++++GY + K D+  A  LF  MP ++  SW+++I GY 
Sbjct: 186 ------ETPDRIKKESILLWNVLVNGYCRAK-DMQMATTLFRSMPERNSGSWSTLIKGYV 238

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
             G+L  A+QLF  MPE+NV SW+ +I+G++Q G+ + A+  + EML +G++P+  +V  
Sbjct: 239 DNGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTVAA 298

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
            +SAC++ GAL  G  IH ++  + I +D  + T+L+DMY KCG +D A  +F +M  K+
Sbjct: 299 VLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTSLLDMYAKCGEVDCAATVFSNMNHKD 358

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
           ++S+  MI G  ++G   +A++CF QM   G   D+++FL VL AC +SG    G   F 
Sbjct: 359 ILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSGEVDLGLNFFD 418

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV 492
           SM+    IEP L+HY  +VDLL RAG+L++A  +VE MP+ P+L  W  L  AC+ H++ 
Sbjct: 419 SMRLDYAIEPTLKHYVLVVDLLGRAGKLDEAHELVEYMPINPDLTTWAALYRACKAHKS- 477

Query: 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
              ++V++ L+EL  +  G Y+ L   +A  G ++   + R  ++K+  ++  G S IE+
Sbjct: 478 NRTDIVLQNLLELDPELRGSYIFLDKTHAAKGKYQDVEKRRLSLQKKVKERSMGCSYIEL 537

Query: 553 DGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586
           D  + +F + +    Q++E+ L ++  +   IER
Sbjct: 538 DCQLNKFAADDYTHKQAQEIRLKLEGIISLAIER 571


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 195/559 (34%), Positives = 298/559 (53%), Gaps = 73/559 (13%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMK-RKGLLVDNYTYPFVLKACGVL-MGLVEGTEIHGEV 138
           N+++  Y+    P  A+S +  M    G+L D      +L  CG L +GL  G ++HG  
Sbjct: 199 NSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLC-GRQVHGFC 257

Query: 139 VKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAR 198
           V+ G + DVFV N L+ MY+KCG M  A  VFE    KD+V+WN ++ G+ + G    A 
Sbjct: 258 VRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDAL 317

Query: 199 EVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHM------------------ 236
            +F +M ++    D ++WS +I GY  ++G    A  +F  M                  
Sbjct: 318 SLFGKMREEKIESDVVTWSSVISGY-AQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSA 376

Query: 237 ----------------------------PIKDLISWNSMIDGYAKIGDLVAAQQLFNEM- 267
                                          DL   N++ID YAK   L  A+ +F+E+ 
Sbjct: 377 CASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEIC 436

Query: 268 -PERNVFSWSIMIDGYAQHGNPKEALYLFREM--LCQGVRPDVISVMGAISACAQVGALD 324
             +R+V +W++MI GYAQHG+   AL LF EM  +   + P+  ++   + ACA++ AL 
Sbjct: 437 PKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALK 496

Query: 325 LGKWIHVF-MKRSRITMDMI-VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
            GK IH + ++RSRI  D++ V   LIDMY K G +D A+ +F SM+K+N +S+  ++ G
Sbjct: 497 FGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTG 556

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
            GM+G  E+A + F +M  E +  D + FL VL ACSHSG+               G++P
Sbjct: 557 YGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGMDF-------------GVDP 603

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
            +EHY+C+VDLL RAG L +A+ ++  MP++P   +W  LL ACR H N  LAE   + L
Sbjct: 604 GVEHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIHSNEELAEFAAKKL 663

Query: 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
           +ELKAD+ G Y LLSNIYA+A  W+   RI  +M++  IKK  G S ++    ++ F  G
Sbjct: 664 LELKADNDGTYTLLSNIYANARRWKDVARIGYLMKRTGIKKIPGWSWVKGRKGMETFYVG 723

Query: 563 EIFDVQSEELELVIQSFVK 581
           +   +QS+++   +   +K
Sbjct: 724 DRTHLQSQKIYETLADLIK 742



 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 164/527 (31%), Positives = 252/527 (47%), Gaps = 67/527 (12%)

Query: 20  QISKTTTHILQILAQLTTNDLITEPFT-LSQLLMSLTSPNTLNMDQAERLFNQIYQPN-- 76
           Q  KT T    +  Q   N  +   +T ++ L+ +  S N++    A  L  +   P+  
Sbjct: 32  QQCKTLTQAKLLHQQYIINGHLLNSYTNVTNLIYTYISSNSIT--NAILLLEKNVTPSHS 89

Query: 77  -TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
             Y  N +IR     ++P  AL  +  MK      D+YT+PFV KACG +     G  IH
Sbjct: 90  SVYWWNQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGEISNFELGASIH 149

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG---SEIKDLVSWNLVLRGFVECG 192
           G V+++GF  +VFV N +I MY KC  +  AR VF+      I D V+WN ++  +  C 
Sbjct: 150 GCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCF 209

Query: 193 EMGKAREVFDEM-------PQ---------------------------------KDAISW 212
               A  +F EM       P                                  +D    
Sbjct: 210 VPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVG 269

Query: 213 SIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER-- 270
           + ++D Y  K G +  A  +FE M  KD+++WN+M+ GY++ G    A  LF +M E   
Sbjct: 270 NALVDMY-AKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKI 328

Query: 271 --NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328
             +V +WS +I GYAQ G   EA+ +FR+M     RP+V+++M  +SACA VGAL  GK 
Sbjct: 329 ESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKE 388

Query: 329 IHVFM-------KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK--NVISYNVM 379
            H +        + +  T D+ V  ALIDMY KC SL+ AR +F  +  K  +V+++ VM
Sbjct: 389 THCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVM 448

Query: 380 IAGLGMNGFGEEALKCFAQMET--EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRH 437
           I G   +G    AL+ F++M      I  +D     VL+AC+       G +I   + R 
Sbjct: 449 IGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRR 508

Query: 438 CGIEPKLEHYS-CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             I+  +   + CL+D+ S++G+++ A  + +SM  K N   W +LL
Sbjct: 509 SRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMS-KRNAVSWTSLL 554


>gi|357150569|ref|XP_003575504.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 548

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 185/567 (32%), Positives = 296/567 (52%), Gaps = 42/567 (7%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           L + L  L Q + +     Q+ AQL    L         L+ S +SP       A  +F+
Sbjct: 7   LPSHLTGLAQRALSPAAARQLHAQLLLRGLPLPARAAVTLIASSSSPQ-----YARAIFD 61

Query: 71  QI--YQPNTYMHNTMIRGYTQSSNPQ---KALSFYVNMKRKGLLVDNYTYPFVLKACGVL 125
            +     N Y+    +  Y + ++P    +A   ++ M R G   + +T   VLK+   L
Sbjct: 62  SVPAASANVYLWTATVSSYAKHASPALAAEAFPLFMFMLRSGPRPNGFTVSSVLKSLSKL 121

Query: 126 MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL 185
               +  ++HG +VK G    + V   L+  Y                 +KD        
Sbjct: 122 RAAHQVCQVHGFLVKAGLASSLHVGATLLDSYGNL------------CRVKD-------- 161

Query: 186 RGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWN 245
                      AR VFDEMP+ + +  + M+ GY  K GD+ +AR +F+ M  +D ISWN
Sbjct: 162 -----------ARRVFDEMPRSNVVVGNAMVSGY-VKAGDVEAARQVFDGMVERDSISWN 209

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           +++ GY + GD   A+ LF+EMP+RNV SW++MI   ++ G   +++ +F +M     RP
Sbjct: 210 TLMSGYLRRGDAGLARDLFDEMPQRNVNSWNMMISACSEVGLWADSVAVFNQMRFMSFRP 269

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D  ++   +SACAQ+G L + + ++  +++  + M+  V  +L+DM+ KCG   EA  +F
Sbjct: 270 DAATMAVLMSACAQLGFLSVARQVYGLLRKGCVEMNCHVHNSLVDMFAKCGCFSEAHLLF 329

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
             M  K+V+SYNVM++ L  +G G++ALK F QM   G+  D + FLGVL AC+H+GL  
Sbjct: 330 AEMDPKDVVSYNVMVSALAHHGHGKDALKLFEQMIEGGLQPDAVTFLGVLSACAHAGLVD 389

Query: 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
            G   F++M     IE   +HY+C+VDL  R G +E+A   V+ MP+KP+  +WG LL A
Sbjct: 390 SGKYYFETMGTTYAIEKSADHYACMVDLYGRVGLIEEAHYFVKIMPVKPHAGIWGALLNA 449

Query: 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
           CR H N+ + EV    L+ ++  + G YVLLSN  A +  W+    +R++MR   I K T
Sbjct: 450 CRKHCNIDVGEVAARELIRIEPMNPGNYVLLSNTLAWSQQWDAVGDVRQLMRGNGIDKNT 509

Query: 546 GRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           G S +E++  + EF+ G+      +E+
Sbjct: 510 GFSWVEVESVVHEFLMGDFSHPSFDEI 536


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 157/425 (36%), Positives = 258/425 (60%), Gaps = 3/425 (0%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D    N L+  +   G    AR +F    ++D+VSWN ++ G  + G + +A+ VF  MP
Sbjct: 128 DAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP 187

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-DLISWNSMIDGYAKIGDLVAAQQLF 264
            ++++SW+ M+ G+   + D+S+A   F + P K D + W +M+ GY  IG++V A + F
Sbjct: 188 VRNSVSWNAMVSGFACSR-DMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYF 246

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGAL 323
             MP RN+ SW+ ++ GY ++ +  +AL LFR M+ +  V+P+  ++   +  C+ + AL
Sbjct: 247 EAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSAL 306

Query: 324 DLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383
             GK IH +  +  ++ ++ V T+L+ MY KCG L  A ++F  M  ++V+++N MI+G 
Sbjct: 307 GFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGY 366

Query: 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443
             +G G+EA+  F +M+ EG+  + + F+ VL AC H+GL   G R F+ M+   GIEP+
Sbjct: 367 AQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPR 426

Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLV 503
           ++HYSC+VDLL RAG+LE+A++++ SMP +P+ + +GTLL ACR ++N+  AE+    L+
Sbjct: 427 VDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLI 486

Query: 504 ELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           E      G YV L+NIYA A  W+   R+R+ M+   + K  G S IEI G + EF S +
Sbjct: 487 EKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSND 546

Query: 564 IFDVQ 568
               Q
Sbjct: 547 RLHPQ 551



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 147/308 (47%), Gaps = 18/308 (5%)

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMI 248
           V  G++  A E F   P+K   +++ ++ GY +  G ++ AR LF+ +P  D +S+N+++
Sbjct: 77  VRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLL 136

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
             +   GD   A++LF  MP R+V SW+ M+ G ++ G  +EA  +F  M          
Sbjct: 137 SCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAM---------- 186

Query: 309 SVMGAISACAQVGALDLGKWIHV---FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
            V  ++S  A V      + +     + + +    D ++ TA++  YM  G++ +A   F
Sbjct: 187 PVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYF 246

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKDDLIFLGVLIACSHSGLA 424
            +M  +N++S+N ++AG   N   ++AL+ F  M  E  +  +      VL+ CS+    
Sbjct: 247 EAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSAL 306

Query: 425 TEGYRIFQ-SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             G +I Q  MK    +   L   + LV +  + G+L  A  +   M  + ++  W  ++
Sbjct: 307 GFGKQIHQWCMK--LPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR-DVVAWNAMI 363

Query: 484 LACRNHQN 491
                H +
Sbjct: 364 SGYAQHGD 371



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 157/380 (41%), Gaps = 54/380 (14%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           N L+S    S       ++ A +   D+++    +S L  S        +++A+ +F  +
Sbjct: 133 NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGA------VEEAKAVFLAM 186

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
              N+   N M+ G+  S +   A  ++ N   KG                         
Sbjct: 187 PVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKG------------------------- 221

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
                        D  +   ++  Y   G++  A   FE   +++LVSWN V+ G+V+  
Sbjct: 222 -------------DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNS 268

Query: 193 EMGKAREVFDEM-------PQKDAISWSIMIDGYRKKKGDISSARILFEHMPI-KDLISW 244
               A  +F  M       P    +S  ++        G           +P+ ++L   
Sbjct: 269 HADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVG 328

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
            S++  Y K GDL +A +LF EM  R+V +W+ MI GYAQHG+ KEA+ LF  M  +GV 
Sbjct: 329 TSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVE 388

Query: 305 PDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
           P+ I+ +  ++AC   G  D G +      +   I   +   + ++D+  + G L+ A  
Sbjct: 389 PNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVD 448

Query: 364 IFYSMT-KKNVISYNVMIAG 382
           +  SM  + +  +Y  ++A 
Sbjct: 449 LIRSMPFEPHPSAYGTLLAA 468



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 13/182 (7%)

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           + T  +   ++ G L  A   F S  +K   +YN ++AG      G  A    A+   + 
Sbjct: 68  LSTVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYA-RALGRLA---DARHLFDR 123

Query: 404 IPKDDLIFLGVLIACSH-SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
           IP  D +    L++C   SG A    R+F SM         +  ++ +V  LS++G +E+
Sbjct: 124 IPTPDAVSYNTLLSCHFASGDADGARRLFASMPVR-----DVVSWNTMVSGLSKSGAVEE 178

Query: 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522
           A  +  +MP++ N   W  ++      ++++ AE       E    D  L+  + + Y D
Sbjct: 179 AKAVFLAMPVR-NSVSWNAMVSGFACSRDMSAAEEWFRNAPE--KGDAVLWTAMVSGYMD 235

Query: 523 AG 524
            G
Sbjct: 236 IG 237


>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
          Length = 669

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 175/500 (35%), Positives = 281/500 (56%), Gaps = 9/500 (1%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++++A ++F ++Y+ +     +MI    Q  +  K L     M+ +G++ +  T   +L 
Sbjct: 171 SVEEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLS 230

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           ACG    + EG  ++ +V K G   DV + N LI MY+KCG +  A   F+    +   S
Sbjct: 231 ACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKS 290

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI-LFEHMPIK 239
           WN ++ GFV+  E  +A  +F+EM         I +         +   R  +  H  IK
Sbjct: 291 WNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIK 350

Query: 240 DL------ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
           D       I  NS+I+ YAK GD+ AA+++F  M +++V SW++M+ GY +      A  
Sbjct: 351 DNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFN 410

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           LF EM    V    ++++  +SAC+Q+GALD G+ IH +++   +  D+ +++AL+DMY 
Sbjct: 411 LFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYA 470

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL- 412
           KCG +D A  IF  M  K  +S+N MI GL  NG+G+EA++ F QM     PK D I L 
Sbjct: 471 KCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLK 530

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            VL AC+H G+  EG R F  M    G+ P  EHY C+VDLL RAG L++A + ++ MP+
Sbjct: 531 AVLGACAHVGMVDEGLRYFYLMSS-LGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPI 589

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           +PN  +WG+LL ACR H  + L +V+ + +V +  +D G++VL+SN++A+   W+    +
Sbjct: 590 EPNPVIWGSLLAACRVHHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHV 649

Query: 533 RKMMRKRKIKKETGRSVIEI 552
           R +M  R I+K  G S +++
Sbjct: 650 RGLMGSRGIEKTPGHSSVQV 669



 Score =  242 bits (617), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 170/555 (30%), Positives = 272/555 (49%), Gaps = 17/555 (3%)

Query: 5   AAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL-NMD 63
           A+    +++ L++ L    +  H+ ++  +L    L ++ F   +L+  L SP    +M 
Sbjct: 10  ASQARPIRHHLLAYLDACASRAHLAELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMR 69

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            A ++F+ + QPN ++ N MIRGY+    P+ AL+ +  M+R+G+  DNYT   V+ A  
Sbjct: 70  YARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASA 129

Query: 124 VLMGL---VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
              GL     G  IH  V ++GF  DVFV++GL+  Y     +  A  VFE    +D+VS
Sbjct: 130 AFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVS 189

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGD---ISSARILFEHMP 237
           W  ++    +CG   K  ++  EM  +  I   + I       G    +   R ++  + 
Sbjct: 190 WTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVG 249

Query: 238 I----KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
                 D+   N++I  Y K G L  A + F  MP R   SW+ +IDG+ Q+   KEAL 
Sbjct: 250 KFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALR 309

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           +F EML  GV PD I+++  +SACAQ+G L  G  +H ++K + I  D I+  +LI+MY 
Sbjct: 310 IFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYA 369

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCG +  A R+F +MTKK+V+S+ VM+ G         A   F +M+   +   ++  + 
Sbjct: 370 KCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVS 429

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           +L ACS  G   +G R   S      +   L   S LVD+ ++ G ++ A  I   M  K
Sbjct: 430 LLSACSQLGALDKG-REIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHK 488

Query: 474 PNL---ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530
             L   A+ G L       + V L + ++E L + K D   L  +L    A  GM +  L
Sbjct: 489 QTLSWNAMIGGLASNGYGKEAVELFDQMLE-LQDPKPDGITLKAVLGAC-AHVGMVDEGL 546

Query: 531 RIRKMMRKRKIKKET 545
           R   +M    +  +T
Sbjct: 547 RYFYLMSSLGVVPDT 561


>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
 gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 530

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 180/558 (32%), Positives = 293/558 (52%), Gaps = 77/558 (13%)

Query: 26  THILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIR 85
           +H   I+  L  ++L    F  +         N  ++  A  +F     PNTY+HNTMIR
Sbjct: 34  SHCYMIITGLNRDNLNVAKFIEA-------CSNAGHLRYAYSVFTHQPCPNTYLHNTMIR 86

Query: 86  GYTQSSNPQKALSFYVNMKRKGLLV----DNYTYPFVLKACGVLMGLVEGTEIHGEVVKM 141
             +    P  A S  + + RK   +    D +T+PFVLK    +  +  G +IHG+VV  
Sbjct: 87  ALSLLDEPN-AHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVF 145

Query: 142 GFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVF 201
           GF   V VV GLI M                               +  CG +G AR+  
Sbjct: 146 GFDSSVHVVTGLIQM-------------------------------YFSCGGLGDARK-- 172

Query: 202 DEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQ 261
                                         +F+ M +KD+  WN+++ GY K+G++  A+
Sbjct: 173 ------------------------------MFDEMLVKDVNVWNALLAGYGKVGEMDEAR 202

Query: 262 QLFNEMP--ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
            L   MP   RN  SW+ +I GYA+ G   EA+ +F+ ML + V PD ++++  +SACA 
Sbjct: 203 SLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACAD 262

Query: 320 VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVM 379
           +G+L+LG+ I  ++    +   + +  A+IDMY K G++ +A  +F  + ++NV+++  +
Sbjct: 263 LGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTI 322

Query: 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439
           IAGL  +G G EAL  F +M   G+  +D+ F+ +L ACSH G    G R+F SM+   G
Sbjct: 323 IAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYG 382

Query: 440 IEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVV 499
           I P +EHY C++DLL RAG+L +A  +++SMP K N A+WG+LL A   H ++ L E  +
Sbjct: 383 IHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERAL 442

Query: 500 EGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEF 559
             L++L+ ++ G Y+LL+N+Y++ G W+ +  +R MM+   +KK  G S IE++  + +F
Sbjct: 443 SELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVENRVYKF 502

Query: 560 VSGEIFDVQSEELELVIQ 577
           +SG++   Q E +  ++Q
Sbjct: 503 ISGDLTHPQVERIHEILQ 520


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 172/516 (33%), Positives = 295/516 (57%), Gaps = 9/516 (1%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
              R+F+++   +    NTMI GY+Q    ++++  ++ M  +    D  T   +L+ACG
Sbjct: 328 DGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACG 386

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            L  L  G  +H  ++  G+ CD    N LI MY+KCG++  ++ VF G + KD VSWN 
Sbjct: 387 HLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNS 446

Query: 184 VLRGFVECGEMGKAREVFDEMP---QKDAISWSIMIDGYRKKKGDISSARILFEHMPI-- 238
           ++  +++ G   +A ++F  M    + D++++ +M+     + GD+   + L   +    
Sbjct: 447 MINVYIQNGSFDEAMKLFKMMKTDVKPDSVTY-VMLLSMSTQLGDLXLGKELHCDLAKMG 505

Query: 239 --KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
              +++  N+++D YAK G++  + ++F  M  R++ +W+ +I       +    L +  
Sbjct: 506 FNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMIS 565

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
            M  +GV PD+ +++  +  C+ + A   GK IH  + +  +  D+ V   LI+MY KCG
Sbjct: 566 RMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCG 625

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
           SL  + ++F  M  K+V+++  +I+  GM G G++A++ F +ME  GI  D + F+ ++ 
Sbjct: 626 SLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIF 685

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
           ACSHSGL  EG   F  MK+   IEP++EHY+C+VDLLSR+  L++A + + SMP+KP+ 
Sbjct: 686 ACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDS 745

Query: 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
           ++WG LL ACR   +  +A+ V E ++EL  DD G YVL+SN+YA  G W+    IRK +
Sbjct: 746 SIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSI 805

Query: 537 RKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           + R +KK+ G S +EI   +  F +G  F  Q EE+
Sbjct: 806 KARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEV 841



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 129/427 (30%), Positives = 222/427 (51%), Gaps = 11/427 (2%)

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           N Y  N++IR  T +    +ALS Y   +R  L  D YT+P V+ AC  L+       IH
Sbjct: 138 NVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIH 197

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
             V+ MGF  D+++ N LI MY +   +  AR VFE   ++D+VSWN ++ G+   G   
Sbjct: 198 DRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWN 257

Query: 196 KAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI------LFEHMPI-KDLISWNSMI 248
           +A E++        +  S  +    +  G + S         L E + I KD+I  N ++
Sbjct: 258 EALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLL 317

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
             Y K   L+  +++F++M  R+  SW+ MI GY+Q G  +E++ LF EM+ Q  +PD++
Sbjct: 318 SMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLL 376

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           ++   + AC  +G L+ GK++H +M  S    D      LI+MY KCG+L  ++ +F  M
Sbjct: 377 TITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGM 436

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
             K+ +S+N MI     NG  +EA+K F  M+T+  P D + ++ +L   +  G    G 
Sbjct: 437 KCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKP-DSVTYVMLLSMSTQLGDLXLGK 495

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
            +   + +  G    +   + LVD+ ++ GE+  +L + E+M  + ++  W T++ +C +
Sbjct: 496 ELHCDLAKM-GFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASCVH 553

Query: 489 HQNVTLA 495
            ++  L 
Sbjct: 554 SEDCNLG 560



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/435 (29%), Positives = 234/435 (53%), Gaps = 15/435 (3%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D+A ++F ++   +    N++I GY  +    +AL  Y   +  G++ D+YT   VL+
Sbjct: 224 DLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLR 283

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           ACG L  + EG  IHG + K+G   DV V NGL+ MY K   +   R +F+   ++D VS
Sbjct: 284 ACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVS 343

Query: 181 WNLVLRGFVECGEMGKAREVFDEM-----PQKDAISWSIMIDGYRKKKGDISSARILFEH 235
           WN ++ G+ + G   ++ ++F EM     P    I+  +   G+    GD+   + + ++
Sbjct: 344 WNTMICGYSQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHL---GDLEFGKYVHDY 400

Query: 236 MPIK----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           M       D  + N +I+ YAK G+L+A+Q++F+ M  ++  SW+ MI+ Y Q+G+  EA
Sbjct: 401 MITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEA 460

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           + LF+ M+   V+PD ++ +  +S   Q+G L LGK +H  + +     +++V   L+DM
Sbjct: 461 MKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDM 519

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y KCG + ++ ++F +M  +++I++N +IA    +      L+  ++M TEG+  D    
Sbjct: 520 YAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATM 579

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           L +L  CS      +G  I   + +  G+E  +   + L+++ S+ G L  +  + + M 
Sbjct: 580 LSILPVCSLLAAKRQGKEIHGCIFK-LGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMK 638

Query: 472 MKPNLALWGTLLLAC 486
            K ++  W  L+ AC
Sbjct: 639 TK-DVVTWTALISAC 652



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 169/360 (46%), Gaps = 13/360 (3%)

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE-GSEIKDLVSWNLVLRGFVEC 191
           ++H  ++ +G    V     LI  Y+       + SVF   S   ++  WN ++R     
Sbjct: 93  KLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHN 152

Query: 192 GEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHMPI----KDLIS 243
           G   +A  ++ E      Q D  ++  +I+       D   A+ + + +       DL  
Sbjct: 153 GLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLL-DFEMAKSIHDRVLXMGFGSDLYI 211

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
            N++ID Y +  DL  A+++F EMP R+V SW+ +I GY  +G   EAL ++      GV
Sbjct: 212 GNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGV 271

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
            PD  ++   + AC  +G+++ G  IH  +++  I  D+IV   L+ MY K   L + RR
Sbjct: 272 VPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRR 331

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           IF  M  ++ +S+N MI G    G  EE++K F +M  +  P D L    +L AC H G 
Sbjct: 332 IFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKP-DLLTITSILQACGHLGD 390

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
              G  +   M    G E      + L+++ ++ G L  +  +   M  K +++ W +++
Sbjct: 391 LEFGKYVHDYMITS-GYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVS-WNSMI 448



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 69/143 (48%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           M  + ++F  +   +    NT+I     S +    L     M+ +G+  D  T   +L  
Sbjct: 526 MGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPV 585

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C +L    +G EIHG + K+G   DV V N LI MYSKCG +  +  VF+  + KD+V+W
Sbjct: 586 CSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTW 645

Query: 182 NLVLRGFVECGEMGKAREVFDEM 204
             ++      GE  KA   F EM
Sbjct: 646 TALISACGMYGEGKKAVRAFGEM 668


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 179/539 (33%), Positives = 293/539 (54%), Gaps = 17/539 (3%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDN-YTYPFVLKACG 123
           A  +F  + + N      ++ G+ +  + ++ L     M+    +  N +T    LKACG
Sbjct: 58  AGEVFGGMPERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACG 117

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
           V+  +  G  IHG  V+ GF     V N L+ +YSK G +G AR VF+G+  ++LV+WN 
Sbjct: 118 VVGDMAAGVWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNA 177

Query: 184 VLRGFVECGEMGKAREVFDEMPQK---------DAISWSIMID-----GYRKKKGDISSA 229
           ++ G+   G    +  VF EM Q+         D  +++ ++      G  ++   + +A
Sbjct: 178 MISGYAHAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAA 237

Query: 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVA-AQQLFNEMPERNVFSWSIMIDGYAQHGNP 288
            ++       + I   +++D Y K   L+  A Q+FN + ++N   W+ +I G+AQ G  
Sbjct: 238 MVIRGVSTASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQV 297

Query: 289 KEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTAL 348
           KEA+ LF      GVR D   +   +   A    ++ G+ +H +  ++   +D+ V  +L
Sbjct: 298 KEAMELFGRFWSSGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGLDVSVANSL 357

Query: 349 IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD 408
           IDMY KCG  DEA R F  +  +NV+S+  MI GLG +G G+EA+  F +M  EG+  D+
Sbjct: 358 IDMYHKCGLTDEAARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDE 417

Query: 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468
           + +L +L ACSHSGL  E  R F +++    + P+ EHY+C+VDLL RAGEL +A ++V 
Sbjct: 418 VAYLALLSACSHSGLVEECRRYFSAIRHDRRLRPRAEHYACMVDLLGRAGELSEAKDLVA 477

Query: 469 SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528
           +MPM P + +W TLL ACR H+NVT+     E L+ +  D+   YV+LSNI+A+AG W  
Sbjct: 478 TMPMAPTVGVWQTLLSACRVHKNVTVGREAGETLLAIDGDNPVNYVMLSNIFAEAGDWRE 537

Query: 529 ALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV-SGEIFDVQSEELELVIQSFVKTTIER 586
             R+R  MR+R ++K+ G S +E+      F   G+    ++ ++  V++   +T  ER
Sbjct: 538 CQRVRGAMRRRGLRKQGGCSWVEVGKEAHFFYGGGDDSHPRAADICCVLRDVERTMRER 596



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 199/406 (49%), Gaps = 42/406 (10%)

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           M+R+ ++ D      +L+A      +  G ++HG ++K+GF  D  + N LI MY+KCG 
Sbjct: 1   MERRKMIAD------MLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGE 54

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGE-------MGKAREVFDEMPQKDAISWSIM 215
           +  A  VF G   +++VSW  ++ GF+  G+       +G  R + D  P +  +S S+ 
Sbjct: 55  LRMAGEVFGGMPERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLK 114

Query: 216 IDGYRKKKGDISSA--------RILFE-HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNE 266
             G     GD+++         R  FE H  +      NS++  Y+K G +  A+++F+ 
Sbjct: 115 ACGV---VGDMAAGVWIHGACVRAGFEGHHVVA-----NSLVLLYSKGGRIGDARRVFDG 166

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC-----QGVRPDVISVMGAISACAQVG 321
              RN+ +W+ MI GYA  G+ +++L +FREM       +  +PD  +    + AC  +G
Sbjct: 167 TVFRNLVTWNAMISGYAHAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLG 226

Query: 322 ALDLGKWIHVFM--KRSRITMDMIVQTALIDMYMKCGS-LDEARRIFYSMTKKNVISYNV 378
           A   G  +H  M  +      + I+  AL+DMY+KC   L  A ++F  + +KN I +  
Sbjct: 227 AAREGAQVHAAMVIRGVSTASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTT 286

Query: 379 MIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF-QSMKRH 437
           +I G    G  +EA++ F +  + G+  D  +   V+   +   L  +G ++   ++K  
Sbjct: 287 VIVGHAQEGQVKEAMELFGRFWSSGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTP 346

Query: 438 CGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
            G++  +   + L+D+  + G  ++A      +P + N+  W  ++
Sbjct: 347 AGLDVSVA--NSLIDMYHKCGLTDEAARRFREVPAR-NVVSWTAMI 389


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 186/533 (34%), Positives = 290/533 (54%), Gaps = 54/533 (10%)

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
           +  + Y+ NT+I  Y    N + A   +     +  ++D+ ++        +L G V+  
Sbjct: 172 FDSDVYVQNTLINMYAVCGNMRDARKLF----DESPVLDSVSWN------SILAGYVKKG 221

Query: 133 EIHGEVVKMGF----LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
           ++  E  K+ F      ++   N +I +  K G +  A  +F   + KD+VSW+ ++ G+
Sbjct: 222 DV--EEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGY 279

Query: 189 VECGEMGKAREVFDEMPQK-----DAISWSIM-----------------------IDGY- 219
            + G   +A  +F EM        + +  S++                       I+ Y 
Sbjct: 280 EQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYV 339

Query: 220 ---------RKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER 270
                        G+I  A+ LF      D ISWNSMI G  K G +  A+ LF+ MPE+
Sbjct: 340 NLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEK 399

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           ++ SWS +I GYAQH    E L LF EM    +RPD   ++  ISAC  + ALD GKW+H
Sbjct: 400 DIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVH 459

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
            +++++ + +++I+ T L+DMYMKCG ++ A  +F  M +K V S+N +I GL +NG  E
Sbjct: 460 AYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVE 519

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
            +L  F++M+  G+  +++ F+GVL AC H GL  EG   F SM    GIEP ++HY C+
Sbjct: 520 RSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCM 579

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           VDLL RAG L +A  ++ESMPM P++A WG LL AC+ H +  + E V   L+EL+ D  
Sbjct: 580 VDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHD 639

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           G +VLLSNI+A  G WE  L +R MM+++ + K  G S+IE +G + EF++G+
Sbjct: 640 GFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGD 692



 Score =  244 bits (624), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 163/528 (30%), Positives = 268/528 (50%), Gaps = 80/528 (15%)

Query: 16  VSLLQISKTTTHILQ----ILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           +S+L+      H L+    IL+Q+     I++ F  S+LL   T    + +D + ++F++
Sbjct: 41  LSILETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDR 100

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           I   N +M NTM+R Y QS++ +KAL  Y  M +  +  DNYTYP V++AC V +    G
Sbjct: 101 IENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGG 160

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            EIH  V+K+GF  DV+V N LI MY+ CG+M  AR +F+ S + D VSWN +L G+V+ 
Sbjct: 161 KEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKK 220

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGY 251
           G++ +A+ +FD+MPQ++ ++ + MI     K G +  A  LF  M  KD++SW+++I   
Sbjct: 221 GDVEEAKLIFDQMPQRNIVASNSMI-VLLGKMGQVMEAWKLFNEMDEKDMVSWSALI--- 276

Query: 252 AKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
                                        GY Q+G  +EAL +F EM   G+R D + V+
Sbjct: 277 ----------------------------SGYEQNGMYEEALVMFIEMNANGMRLDEVVVV 308

Query: 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY------------------- 352
             +SACA +  +  GK IH  + R  I   + +Q ALI MY                   
Sbjct: 309 SVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNL 368

Query: 353 ------------MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME 400
                       MKCGS+++AR +F  M +K+++S++ +I+G   +    E L  F +M+
Sbjct: 369 DQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQ 428

Query: 401 TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460
              I  D+ I + V+ AC+H     +G  +   ++++ G++  +   + L+D+  + G +
Sbjct: 429 LGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKN-GLKVNVILGTTLLDMYMKCGCV 487

Query: 461 EQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508
           E AL +   M  K  ++ W  L++            + V GLVE   D
Sbjct: 488 ENALEVFNGMEEK-GVSSWNALIIG-----------LAVNGLVERSLD 523



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 169/344 (49%), Gaps = 39/344 (11%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           +A +LFN++ + +    + +I GY Q+   ++AL  ++ M   G+ +D      VL AC 
Sbjct: 256 EAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACA 315

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            L  +  G  IHG V++MG    V + N LI MYS  G +  A+ +F GS   D +SWN 
Sbjct: 316 HLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNS 375

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK--------------GDISSA 229
           ++ G ++CG + KAR +FD MP+KD +SWS +I GY +                G I   
Sbjct: 376 MISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPD 435

Query: 230 RILF-------EHMPIKDLISW-----------------NSMIDGYAKIGDLVAAQQLFN 265
             +         H+   D   W                  +++D Y K G +  A ++FN
Sbjct: 436 ETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFN 495

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
            M E+ V SW+ +I G A +G  + +L +F EM   GV P+ I+ MG + AC  +G +D 
Sbjct: 496 GMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDE 555

Query: 326 GKWIHVFM-KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           G+     M ++  I  ++     ++D+  + G L+EA ++  SM
Sbjct: 556 GRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESM 599



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 116/255 (45%), Gaps = 11/255 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++++A  LF+ + + +    + +I GY Q     + L+ +  M+   +  D      V+ 
Sbjct: 385 SVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVIS 444

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L +G  +H  + K G   +V +   L+ MY KCG +  A  VF G E K + S
Sbjct: 445 ACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSS 504

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIM---IDGYRKKKGDISSARILFEHMP 237
           WN ++ G    G + ++ ++F EM     I   I    + G  +  G +   R  F  M 
Sbjct: 505 WNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMI 564

Query: 238 IKDLISWN-----SMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEA 291
            K  I  N      M+D   + G L  A++L   MP   +V +W  ++    +HG+ +  
Sbjct: 565 EKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMG 624

Query: 292 LYLFREMLCQGVRPD 306
             + R+++   ++PD
Sbjct: 625 ERVGRKLI--ELQPD 637


>gi|297833170|ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330307|gb|EFH60726.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 657

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 196/594 (32%), Positives = 330/594 (55%), Gaps = 56/594 (9%)

Query: 18  LLQISKTTTHILQILAQLTTNDLITEPFTLSQLLM--SLTSPNTLNMDQAERLF-NQIYQ 74
           LL+   +     Q+LAQ+   +LI   F +S+L+   ++T P   N+D A+ LF +    
Sbjct: 39  LLENCSSRNQFKQVLAQIMRFNLIGVTFPMSRLIFFSAITYPE--NLDLAKLLFLDFTPN 96

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           PN +++NTMI   + S N  +    Y +M R  +  D  T+  ++KA   L    E  +I
Sbjct: 97  PNVFVYNTMISAVSSSKN--ECFGLYSSMIRYRVSPDRQTFLHLMKASSFL---SEVKQI 151

Query: 135 HGEVVKMGFLC-DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           H  ++  G L    ++ N L+  Y + G +G A  VF      D+ S+N+++ G+ + G 
Sbjct: 152 HCHIIVSGCLSLGNYLWNSLVKFYMELGSLGFAEKVFAIMPQPDVSSFNVMIVGYAKQGF 211

Query: 194 MGKAREVFDEM------PQK-------------DAISWSIMIDGYRKKKGDISSARIL-- 232
             +A E++ +M      P +               I     + G+ +++G + S+ ++  
Sbjct: 212 GLEALELYYKMVSDGIEPDEYTLLGLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILR 271

Query: 233 -------------------FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
                              F+ +  KD+ SWN+M+ G+ ++GD+ AAQ +F++MP+R++ 
Sbjct: 272 NALLDMYFKCKESGLAKRAFDALKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPQRDLV 331

Query: 274 SWSIMIDGYAQHGNPKEALY-LFREML-CQGVRPDVISVMGAISACAQVGALDLGKWIHV 331
           SW+ ++  Y++ G  + A+  LF EML  + V+PD ++++  IS  A  G L  G+W+H 
Sbjct: 332 SWNSLLFCYSKKGCDQRAVRELFYEMLIVEKVKPDRVTMVSLISGAANNGELSHGRWVHG 391

Query: 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391
            M R ++  D  + +ALIDMY KCG ++ A  +F + T+K+V  +  MI G   +G+G++
Sbjct: 392 LMIRLQLEGDAFLSSALIDMYCKCGLIERAFMVFKTATEKDVPLWTSMITGFAFHGYGQQ 451

Query: 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
           AL+ F +M+ E +  + +  L VL ACSHSGL  EG  +F  MK   G  P+ EHY  LV
Sbjct: 452 ALQLFKRMQEEDVTPNKVTLLAVLTACSHSGLVEEGLHVFYHMKEKFGFHPETEHYGSLV 511

Query: 452 DLLSRAGELEQALNIVES-MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           DLL RAG LE+A +IV++ MPM+P+ ++WG++L ACR  +++  AE+ +  L++L+ +  
Sbjct: 512 DLLCRAGRLEEAKDIVQNKMPMRPSQSMWGSILSACREGEDIETAELALSELLKLEPEKE 571

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG-RSVIEIDGNIKEFVSGE 563
           G YVLLSNIYA  G W ++ + R+ M  R +KK  G  SV+ ++G +  FV+ E
Sbjct: 572 GGYVLLSNIYATVGRWGYSDKTREAMESRGVKKTAGYSSVVGVEG-VHSFVAAE 624


>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g29230-like [Glycine max]
          Length = 446

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 164/420 (39%), Positives = 259/420 (61%), Gaps = 5/420 (1%)

Query: 166 ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGD 225
           A  VF     K++ +W  V+   V C +M  AR +FD  PQ D + W++++ GY  + GD
Sbjct: 13  AYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAPQCDVVLWNVIVSGY-IELGD 71

Query: 226 ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
           + +AR LF+ MP  D++SWN+++ GYA  G++    ++F EMP RNV+SW+ +I GY ++
Sbjct: 72  MVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYVRN 131

Query: 286 GNPKEALYLFREMLCQGVR-PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIV 344
           G  KEAL  F+ ML  GV  P+  +V+  +SAC+++G L++GKW+HV+        ++ V
Sbjct: 132 GLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNLFV 191

Query: 345 QTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGI 404
             ALIDMY KCG +++A  +F  +  K++I++N +I  L M+    +AL  F  M+  G 
Sbjct: 192 GNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKRAGE 251

Query: 405 PKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL 464
             D + F+G+L AC+H GL   G+  FQSM     I P++EHY C+VDLL RAG + QA+
Sbjct: 252 RPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLINQAV 311

Query: 465 NIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524
           +IV  MPM+P++ +W  LL ACR ++NV +AE+ ++ L+EL+ ++ G +V+LSNIY D G
Sbjct: 312 DIVRKMPMEPDVVIWAALLGACRXYKNVEMAELALQRLIELEPNNPGNFVMLSNIYKDLG 371

Query: 525 MWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTI 584
             +   R++  MR    +K  G SVI  + ++ EF S    D +  E + + ++    TI
Sbjct: 372 RSQDVARLKVAMRDTGFRKVPGCSVIGCNDSVVEFYS---LDERHPETDSIYRALQGLTI 428



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 41/217 (18%)

Query: 145 CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM 204
           CDV + N ++  Y + G M  AR +F+     D++SWN VL G+   GE+    +VF+EM
Sbjct: 54  CDVVLWNVIVSGYIELGDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEM 113

Query: 205 PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLI---------------------- 242
           P ++  SW+ +I GY  + G    A   F+ M +  ++                      
Sbjct: 114 PARNVYSWNGLIGGY-VRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEI 172

Query: 243 -SW-----------------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQ 284
             W                 N++ID YAK G +  A  +F+ +  +++ +W+ +I+  A 
Sbjct: 173 GKWVHVYADSIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAM 232

Query: 285 HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
           H +  +AL LF  M   G RPD ++ +G +SAC  +G
Sbjct: 233 HXHAADALSLFEGMKRAGERPDGVTFVGILSACTHMG 269



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 114/235 (48%), Gaps = 10/235 (4%)

Query: 67  RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDN-YTYPFVLKACGVL 125
           ++F ++   N Y  N +I GY ++   ++AL  +  M   G++V N YT   VL AC  L
Sbjct: 108 KVFEEMPARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRL 167

Query: 126 MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL 185
             L  G  +H     +G+  ++FV N LI MY+KCG +  A  VF+G ++KD+++WN ++
Sbjct: 168 GDLEIGKWVHVYADSIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTII 227

Query: 186 RGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRK----KKGDISSARILFEHMP 237
                      A  +F+ M     + D +++  ++         + G +    ++ +++ 
Sbjct: 228 NSLAMHXHAADALSLFEGMKRAGERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLI 287

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEA 291
           +  +  +  M+D   + G +  A  +  +MP E +V  W+ ++     + N + A
Sbjct: 288 VPQIEHYGCMVDLLGRAGLINQAVDIVRKMPMEPDVVIWAALLGACRXYKNVEMA 342


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 193/616 (31%), Positives = 319/616 (51%), Gaps = 49/616 (7%)

Query: 14  PLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIY 73
           P++   ++S     +L   A +  +     P  L   L+ + + N  + ++A +LF+ I 
Sbjct: 67  PVLKRFELSNGAEFLLSTEAMVPPSLPTNIPSHLGLRLIRV-ALNVGDFNRARQLFDNIP 125

Query: 74  QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
           QP+    +T+I   T      +A+  Y +++ +G+  D   +    KAC V    +   E
Sbjct: 126 QPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKE 185

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           +H +  + G + DVFV N LI  Y KC  +  AR VF+   ++D+VSW  +   +V+CG 
Sbjct: 186 VHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGF 245

Query: 194 MGKAREVFDEM------PQKDAISWSIM--------------IDGYRKKKG--------- 224
             K  +VF EM      P    +S SI+              I G+  + G         
Sbjct: 246 PRKGMDVFREMGWSGVKPNPMTVS-SILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCS 304

Query: 225 ----------DISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV-- 272
                      +  AR++F+ MP +D++SWN ++  Y K  +      LF +M    V  
Sbjct: 305 ALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRA 364

Query: 273 --FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
              +W+ +I G  ++G  +EA+ +FR+M   G +P+ I++   + AC+    L +GK IH
Sbjct: 365 DEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIH 424

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
            ++ R     D+   TAL+ MY KCG L+ +R +F  M +K+V+++N MI    M+G G+
Sbjct: 425 CYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGK 484

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
           EAL  F +M    +  + + F GVL  CSHS L  EG +IF SM R   +EP   HYSC+
Sbjct: 485 EALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCV 544

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           VD+ SRAG L +A   ++ MPM+P  + WG LL ACR ++NV LA++  + L E++ ++ 
Sbjct: 545 VDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNP 604

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570
           G YV L NI   A MW  A ++R +M++R I K  G S +++   +  FV G+  +++S+
Sbjct: 605 GNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESD 664

Query: 571 ELELVIQSFVKTTIER 586
           +    I +F+   +E+
Sbjct: 665 K----IYNFLDELVEK 676


>gi|115474919|ref|NP_001061056.1| Os08g0162200 [Oryza sativa Japonica Group]
 gi|28564637|dbj|BAC57819.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623025|dbj|BAF22970.1| Os08g0162200 [Oryza sativa Japonica Group]
 gi|125602282|gb|EAZ41607.1| hypothetical protein OsJ_26139 [Oryza sativa Japonica Group]
 gi|215741371|dbj|BAG97866.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 535

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 160/404 (39%), Positives = 251/404 (62%), Gaps = 4/404 (0%)

Query: 151 NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAI 210
           N L+    + G +  AR++F+   ++D+VSWN ++ G  + G +  A E+FD+MP+++A 
Sbjct: 131 NSLLASLLRSGDLAAARALFDRMPVRDVVSWNSMVAGLAKAGHLDAAIELFDKMPERNAA 190

Query: 211 SWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-E 269
           SW+ ++ GY   +GD++ AR LFE MP++  +SW +MI GYA  GD+ AA +LF  M  +
Sbjct: 191 SWNAVMCGY-IAQGDLAQARELFEQMPVRSNVSWITMISGYANSGDVHAAGELFERMENK 249

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV--RPDVISVMGAISACAQVGALDLGK 327
           +++++W+ MI  YA++G  +EAL +F  ML   V   P+  +    ISAC+Q+G L  G 
Sbjct: 250 KDLYAWNAMIACYAKNGCAREALAVFNRMLKPHVWVMPNEKTFSSVISACSQLGDLRFGL 309

Query: 328 WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
           W   FM    I +D  ++TAL+D++ K G +D A  +F  +  ++V+SY+ +I G GMNG
Sbjct: 310 WAESFMGSVGIELDDHLRTALVDLHTKSGRIDRAFDLFRGLGMRDVVSYSAIIVGCGMNG 369

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
              EA+  F +M    I  + + F+G+L A S++GL  E    F SM     I P +EHY
Sbjct: 370 KFNEAVSLFKEMSDAKISPNAVTFVGLLSAYSNAGLMEEARACFASMTEKYKISPSMEHY 429

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
           + +VDLL R+G+L++A  ++  MPMKP+ ++WG LLLACR H NV L E+V     EL+ 
Sbjct: 430 TIMVDLLGRSGKLDEAYQLIMQMPMKPDASIWGALLLACRLHNNVELGEIVASKCFELEP 489

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
            + G Y+LL NIY++A  WE   R+RK+M +R + K  G S ++
Sbjct: 490 GESGYYILLGNIYSEANKWEKVKRLRKIMAERGLNKMPGSSWVQ 533



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 156/347 (44%), Gaps = 31/347 (8%)

Query: 225 DISSARILFEHMPIKD----------LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
           D S A  L +  P +           L+S NS++    + GDL AA+ LF+ MP R+V S
Sbjct: 101 DPSRAHSLLDETPPRPPRGRAGAHSFLVSRNSLLASLLRSGDLAAARALFDRMPVRDVVS 160

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W+ M+ G A+ G+   A+ LF +M      P+  +       C  +   DL +   +F +
Sbjct: 161 WNSMVAGLAKAGHLDAAIELFDKM------PERNAASWNAVMCGYIAQGDLAQARELFEQ 214

Query: 335 ---RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM-TKKNVISYNVMIAGLGMNGFGE 390
              RS ++        +I  Y   G +  A  +F  M  KK++ ++N MIA    NG   
Sbjct: 215 MPVRSNVSW-----ITMISGYANSGDVHAAGELFERMENKKDLYAWNAMIACYAKNGCAR 269

Query: 391 EALKCFAQMETEG--IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
           EAL  F +M      +  ++  F  V+ ACS  G    G    +S     GIE      +
Sbjct: 270 EALAVFNRMLKPHVWVMPNEKTFSSVISACSQLGDLRFGLWA-ESFMGSVGIELDDHLRT 328

Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK-A 507
            LVDL +++G +++A ++   + M+ ++  +  +++ C  +     A  + + + + K +
Sbjct: 329 ALVDLHTKSGRIDRAFDLFRGLGMR-DVVSYSAIIVGCGMNGKFNEAVSLFKEMSDAKIS 387

Query: 508 DDCGLYVLLSNIYADAGMWEHALR-IRKMMRKRKIKKETGRSVIEID 553
            +   +V L + Y++AG+ E A      M  K KI        I +D
Sbjct: 388 PNAVTFVGLLSAYSNAGLMEEARACFASMTEKYKISPSMEHYTIMVD 434



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 14/243 (5%)

Query: 58  NTLNMDQAERLFNQI-YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV--DNYT 114
           N+ ++  A  LF ++  + + Y  N MI  Y ++   ++AL+ +  M +  + V  +  T
Sbjct: 232 NSGDVHAAGELFERMENKKDLYAWNAMIACYAKNGCAREALAVFNRMLKPHVWVMPNEKT 291

Query: 115 YPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174
           +  V+ AC  L  L  G      +  +G   D  +   L+ +++K G +  A  +F G  
Sbjct: 292 FSSVISACSQLGDLRFGLWAESFMGSVGIELDDHLRTALVDLHTKSGRIDRAFDLFRGLG 351

Query: 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSAR 230
           ++D+VS++ ++ G    G+  +A  +F EM       +A+++  ++  Y    G +  AR
Sbjct: 352 MRDVVSYSAIIVGCGMNGKFNEAVSLFKEMSDAKISPNAVTFVGLLSAY-SNAGLMEEAR 410

Query: 231 ILFEHMPIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFS-WSIMIDGYAQ 284
             F  M  K  IS     +  M+D   + G L  A QL  +MP +   S W  ++     
Sbjct: 411 ACFASMTEKYKISPSMEHYTIMVDLLGRSGKLDEAYQLIMQMPMKPDASIWGALLLACRL 470

Query: 285 HGN 287
           H N
Sbjct: 471 HNN 473



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/261 (18%), Positives = 99/261 (37%), Gaps = 58/261 (22%)

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ-------------- 319
           +W++ I   A  G P+ A+ L+   L  G RP   ++   + + ++              
Sbjct: 11  TWTLAIRAAADQGRPRRAVALYLSSLRSGRRPCPFALAAVLKSVSRLLLPAAHPLLAAAA 70

Query: 320 ----VGALDLGKWIHVFMK--------------RSRITMD----------------MIVQ 345
                  L LG   H + +              R+   +D                ++ +
Sbjct: 71  ASIHAHLLRLGLLAHPYPRAALAHLYARLPDPSRAHSLLDETPPRPPRGRAGAHSFLVSR 130

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
            +L+   ++ G L  AR +F  M  ++V+S+N M+AGL   G  + A++ F +M      
Sbjct: 131 NSLLASLLRSGDLAAARALFDRMPVRDVVSWNSMVAGLAKAGHLDAAIELFDKMPERNAA 190

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
             + +  G +      G   +   +F+ M     +      +  ++   + +G++  A  
Sbjct: 191 SWNAVMCGYIA----QGDLAQARELFEQMPVRSNVS-----WITMISGYANSGDVHAAGE 241

Query: 466 IVESMPMKPNLALWGTLLLAC 486
           + E M  K +L  W   ++AC
Sbjct: 242 LFERMENKKDLYAWNA-MIAC 261



 Score = 46.6 bits (109), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 69/337 (20%), Positives = 132/337 (39%), Gaps = 80/337 (23%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D A  LF+++ + N    N ++ GY    +  +A   +  M  +     N ++     
Sbjct: 173 HLDAAIELFDKMPERNAASWNAVMCGYIAQGDLAQARELFEQMPVR----SNVSW----- 223

Query: 121 ACGVLMGLVEGTEIH--GEVV-KMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
              ++ G     ++H  GE+  +M    D++  N +I  Y+K    GCAR          
Sbjct: 224 -ITMISGYANSGDVHAAGELFERMENKKDLYAWNAMIACYAK---NGCAREA-------- 271

Query: 178 LVSWNLVLRGFV--------------ECGEMGKAREVFDEMPQKDAISWSIMIDGYRK-- 221
           L  +N +L+  V               C ++G  R  F    +    S  I +D + +  
Sbjct: 272 LAVFNRMLKPHVWVMPNEKTFSSVISACSQLGDLR--FGLWAESFMGSVGIELDDHLRTA 329

Query: 222 ------KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
                 K G I  A  LF  + ++D++S++++I G    G    A  LF EM +      
Sbjct: 330 LVDLHTKSGRIDRAFDLFRGLGMRDVVSYSAIIVGCGMNGKFNEAVSLFKEMSDAK---- 385

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM-K 334
                                      + P+ ++ +G +SA +  G ++  +     M +
Sbjct: 386 ---------------------------ISPNAVTFVGLLSAYSNAGLMEEARACFASMTE 418

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
           + +I+  M   T ++D+  + G LDEA ++   M  K
Sbjct: 419 KYKISPSMEHYTIMVDLLGRSGKLDEAYQLIMQMPMK 455


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 179/502 (35%), Positives = 288/502 (57%), Gaps = 11/502 (2%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N MI G+ Q+ N  +AL     MK + + +D  T   +L  C     +V G  +H  V+K
Sbjct: 217 NAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIK 276

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
            G   DVFV N LI MYSK G +  A+ VF+G E++DLVSWN ++  + +  +   A   
Sbjct: 277 HGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGF 336

Query: 201 FDEMPQKDAISWSIMIDGYRKKKGDISSARI--LFEHMPIK------DLISWNSMIDGYA 252
           F EM         + +       G +S  RI        ++      D++  N++++ YA
Sbjct: 337 FKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYA 396

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG--VRPDVISV 310
           K+G +  A+ +F ++P R+V SW+ +I GYAQ+G   EA+  +  M+ +G  + P+  + 
Sbjct: 397 KLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAY-NMMEEGRTIVPNQGTW 455

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
           +  + A + VGAL  G  IH  + ++ + +D+ V T LIDMY KCG L++A  +FY + +
Sbjct: 456 VSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQ 515

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           +  + +N +I+ LG++G GE+AL+ F  M  +G+  D + F+ +L ACSHSGL  E    
Sbjct: 516 ETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWC 575

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
           F +M++   I+P L+HY C+VDL  RAG LE+A N+V +MP++ + ++WGTLL ACR H 
Sbjct: 576 FDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHG 635

Query: 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           N  L     + L+E+ +++ G YVLLSNIYA+ G WE A+++R + R R ++K  G S +
Sbjct: 636 NAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSV 695

Query: 551 EIDGNIKEFVSGEIFDVQSEEL 572
            +   ++ F +G     Q  E+
Sbjct: 696 VVGSVVEVFYAGNQSHPQCAEI 717



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 167/340 (49%), Gaps = 11/340 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +  A+R+F+ +   +    N++I  Y Q+ +P  AL F+  M   G+  D  T   +   
Sbjct: 299 LQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASI 358

Query: 122 CGVLMGLVEGTEIHGEVVKMGFL-CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            G L     G  +HG VV+  +L  D+ + N L+ MY+K G + CAR+VFE    +D++S
Sbjct: 359 FGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVIS 418

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAI-----SWSIMIDGYRKKKGDISSARI---L 232
           WN ++ G+ + G   +A + ++ M +   I     +W  ++  Y          +I   L
Sbjct: 419 WNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRL 478

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
            ++    D+     +ID Y K G L  A  LF E+P+     W+ +I     HG+ ++AL
Sbjct: 479 IKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKAL 538

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW-IHVFMKRSRITMDMIVQTALIDM 351
            LF++M   GV+ D I+ +  +SAC+  G +D  +W      K  RI  ++     ++D+
Sbjct: 539 QLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDL 598

Query: 352 YMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNGFGE 390
           + + G L++A  +  +M  + +   +  ++A   ++G  E
Sbjct: 599 FGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAE 638



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 185/369 (50%), Gaps = 32/369 (8%)

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           ++H  ++ +G   DV ++  L+ +Y+  G +  + + F+  + K++ SWN ++  +V   
Sbjct: 69  QLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVR-- 126

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKK---KGDISSA----------RILFEHMPIK 239
             G+ R+  D + +  ++S  +  D Y      K  +S A          ++ FEH    
Sbjct: 127 -RGRYRDSMDCVTELLSLS-GVRPDFYTFPPVLKACLSLADGEKMHCWVLKMGFEH---- 180

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           D+    S+I  Y++ G +  A ++F +MP R+V SW+ MI G+ Q+GN  EAL +   M 
Sbjct: 181 DVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMK 240

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
            + V+ D ++V   +  CAQ   +  G  +H+++ +  +  D+ V  ALI+MY K G L 
Sbjct: 241 TEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQ 300

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL---- 415
           +A+R+F  M  ++++S+N +IA    N     AL  F +M   G+  D L  + +     
Sbjct: 301 DAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFG 360

Query: 416 -IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
            ++    G A  G+ +     R   +E  +   + LV++ ++ G ++ A  + E +P + 
Sbjct: 361 QLSDRRIGRAVHGFVV-----RCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRD 415

Query: 475 NLALWGTLL 483
            ++ W TL+
Sbjct: 416 VIS-WNTLI 423



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 12/240 (5%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNY-TYPFVL 119
           ++D A  +F Q+   +    NT+I GY Q+    +A+  Y  M+    +V N  T+  +L
Sbjct: 400 SIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSIL 459

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
            A   +  L +G +IHG ++K     DVFV   LI MY KCG +  A S+F     +  V
Sbjct: 460 PAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSV 519

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEH 235
            WN ++      G   KA ++F +M     + D I++  ++       G +  A+  F+ 
Sbjct: 520 PWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSAC-SHSGLVDEAQWCFDT 578

Query: 236 MP----IK-DLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPK 289
           M     IK +L  +  M+D + + G L  A  L + MP + +   W  ++     HGN +
Sbjct: 579 MQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAE 638


>gi|297804490|ref|XP_002870129.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315965|gb|EFH46388.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 853

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 176/484 (36%), Positives = 272/484 (56%), Gaps = 26/484 (5%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N +I    +S +   ALS +  M+ K  +  N     + K    +M   E  ++  E+ +
Sbjct: 65  NKIIATRVRSGDIDGALSVFHGMRAKNTVSWNSLLVGISKDPSRMM---EAHQLFDEIPE 121

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
                D F  N ++  Y + G+   A+S F     KD  SWN ++ G+   GEM KAR +
Sbjct: 122 P----DTFSYNIMLSCYVRNGNFEKAQSFFNRMPFKDAASWNTMITGYARRGEMEKARVL 177

Query: 201 FDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAA 260
           F  M +K+ +SW+ MI GY  + GD+  A   F+  P + +++W +MI GY K   +  A
Sbjct: 178 FYSMMEKNEVSWNAMISGY-IECGDLEKAAHFFKAAPFRGVVAWTAMITGYMKAKKVELA 236

Query: 261 QQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
           + +F +M  ++N+ +W+ MI GY ++  P++ L LFR ML +G+RP+   +  A+  C++
Sbjct: 237 EAMFKDMTVKKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSE 296

Query: 320 VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVM 379
           + AL LG+ IH                  I MY KCG L +A ++F +M KK+V+++N M
Sbjct: 297 LSALCLGRQIHQ-----------------IVMYCKCGELGDAWKLFEAMKKKDVVAWNAM 339

Query: 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439
           I+G   +G  E+AL  F +M       D + F+ VL+AC+H+GL   G   F SM R   
Sbjct: 340 ISGYAQHGNAEKALCLFHEMRDSKTKPDWITFVAVLLACNHAGLVDIGMTYFDSMVRDYR 399

Query: 440 IEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVV 499
           +EP+ +HY+C+VDLL RAG++E+AL ++ SMP +P+ A++GTLL ACR H+NV LAE   
Sbjct: 400 VEPRPDHYTCMVDLLGRAGKVEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAA 459

Query: 500 EGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEF 559
           E L+EL   +   YV L+NIYA   +WE   R+RK M++  + K  G S IEI   I  F
Sbjct: 460 EKLLELDPRNAAGYVQLANIYASKNLWEDVARVRKRMKESNVVKVPGYSWIEIRNKIHHF 519

Query: 560 VSGE 563
            S +
Sbjct: 520 RSSD 523



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 163/368 (44%), Gaps = 95/368 (25%)

Query: 56  SPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTY 115
           S +   M +A +LF++I +P+T+ +N M+  Y ++ N +KA SF+  M            
Sbjct: 103 SKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNGNFEKAQSFFNRM------------ 150

Query: 116 PFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI 175
           PF                            D    N +I  Y++ G M  AR +F     
Sbjct: 151 PFK---------------------------DAASWNTMITGYARRGEMEKARVLFYSMME 183

Query: 176 KDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEH 235
           K+ VSWN ++ G++ECG++ KA   F   P +  ++W+ MI GY K K  +  A  +F+ 
Sbjct: 184 KNEVSWNAMISGYIECGDLEKAAHFFKAAPFRGVVAWTAMITGYMKAK-KVELAEAMFKD 242

Query: 236 MPI-KDLISWNSMIDGYA------------------------------------------ 252
           M + K+L++WN+MI GY                                           
Sbjct: 243 MTVKKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALCL 302

Query: 253 -----------KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
                      K G+L  A +LF  M +++V +W+ MI GYAQHGN ++AL LF EM   
Sbjct: 303 GRQIHQIVMYCKCGELGDAWKLFEAMKKKDVVAWNAMISGYAQHGNAEKALCLFHEMRDS 362

Query: 302 GVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
             +PD I+ +  + AC   G +D+G  +    ++  R+       T ++D+  + G ++E
Sbjct: 363 KTKPDWITFVAVLLACNHAGLVDIGMTYFDSMVRDYRVEPRPDHYTCMVDLLGRAGKVEE 422

Query: 361 ARRIFYSM 368
           A ++  SM
Sbjct: 423 ALKLIRSM 430


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 166/509 (32%), Positives = 280/509 (55%), Gaps = 38/509 (7%)

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           F+++   ++  +NT I G++ +S PQ++L  +  M+R+G     YT   +L A   L  L
Sbjct: 112 FDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDL 171

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
             G +IHG ++   FL +VF+ N L  MY+K                             
Sbjct: 172 RYGKQIHGSIIVRNFLGNVFIWNALTDMYAK----------------------------- 202

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFE-----HMPIKDLIS 243
             CGE+ +AR +FD + +K+ +SW++MI GY K         +L +     HMP  D ++
Sbjct: 203 --CGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMP--DQVT 258

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
            +++I  Y + G +  A+++F+E  E+++  W+ M+ GYA++G  ++AL LF EML + +
Sbjct: 259 MSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHI 318

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
            PD  ++   +S+CA++ +L  G+ +H     + +  +++V +ALIDMY KCG +D+AR 
Sbjct: 319 EPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARS 378

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           +F  M  +NV+S+N MI G   NG  ++AL+ F  M  +    D++ F+G+L AC H   
Sbjct: 379 VFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNW 438

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             +G   F S+    G+ P L+HY+C+V+LL R G +EQA+ ++++M   P+  +W TLL
Sbjct: 439 IEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLL 498

Query: 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
             C    ++  AEV    L EL       Y++LSN+YA  G W+    +R +M+ + +KK
Sbjct: 499 SICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKK 558

Query: 544 ETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
             G S IEID  +  F S +    +SE++
Sbjct: 559 FAGFSWIEIDNEVHRFTSEDRTHPESEDI 587


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 175/521 (33%), Positives = 300/521 (57%), Gaps = 11/521 (2%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           +A R+F+++ + +    N M+ G  +++    A++    M  +G+  D  T   VL  C 
Sbjct: 120 EAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCV 179

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
           VL        +H   VK G   ++FV N LI +Y K G +  A  VF G  ++DLV+WN 
Sbjct: 180 VLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNS 239

Query: 184 VLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHM--- 236
           ++    + G++  A E+F  M +     D ++  + +     + GD   A+ +  ++   
Sbjct: 240 IISANEQGGKVAAAVELFHGMMESGVCPDVLTL-VSLASAVAQCGDELGAKSVHCYVRRR 298

Query: 237 --PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
              + D+I+ N+M+D YAK+  + AAQ++F+ +P+R+V SW+ +I GY Q+G   EA+ +
Sbjct: 299 GWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRI 358

Query: 295 FREMLC-QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           + +M   +G++P   + +  + A + +G L  G  +H    ++ + +D+ V T LID+Y 
Sbjct: 359 YNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYA 418

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCG L EA  +F  M +++   +N +IAGLG++G G +AL  F+QM+ E I  D + F+ 
Sbjct: 419 KCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVS 478

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           +L ACSH+GL  +G   F  M+   GI P  +HY+C+VD+L RAG+L++A   ++SMP+K
Sbjct: 479 LLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIK 538

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
           P+ A+WG LL ACR H NV + +V  + L EL  ++ G YVL+SN+YA  G W+    +R
Sbjct: 539 PDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVR 598

Query: 534 KMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELEL 574
            ++R++ ++K  G S +E+ G++  F SG   +   +  E+
Sbjct: 599 SLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHPQHEEI 639



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 191/377 (50%), Gaps = 16/377 (4%)

Query: 108 LLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFL-CDVFVVNGLIGMYSKCGHMGCA 166
           L  D++T+P +++A     G     ++H   +++G L  +VF    L+  Y + G +  A
Sbjct: 65  LRPDSFTFPPLVRAAP---GPASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEA 121

Query: 167 RSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKK 222
             VF+    +D+ +WN +L G         A  +   M  +    DA++ S ++      
Sbjct: 122 YRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLP-MCVV 180

Query: 223 KGDISSARILF----EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM 278
            GD + A ++     +H    +L   N++ID Y K+G L  A  +F  M  R++ +W+ +
Sbjct: 181 LGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSI 240

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338
           I    Q G    A+ LF  M+  GV PDV++++   SA AQ G     K +H +++R   
Sbjct: 241 ISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGW 300

Query: 339 TM-DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFA 397
            + D+I   A++DMY K   +D A+++F ++  ++V+S+N +I G   NG   EA++ + 
Sbjct: 301 DVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYN 360

Query: 398 QMET-EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456
            M   EG+      F+ VL A S+ G   +G R+  ++    G+   +   +CL+DL ++
Sbjct: 361 DMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRM-HALSIKTGLNLDVYVTTCLIDLYAK 419

Query: 457 AGELEQALNIVESMPMK 473
            G+L +A+ + E MP +
Sbjct: 420 CGKLVEAMFLFEHMPRR 436



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 125/244 (51%), Gaps = 1/244 (0%)

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           ++ +  S++  Y + G +  A ++F+EMPER+V +W+ M+ G  ++    +A+ L   M+
Sbjct: 101 NVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMV 160

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
            +GV  D +++   +  C  +G   L   +HV+  +  ++ ++ V  ALID+Y K G L 
Sbjct: 161 GEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLT 220

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           EA  +F  M  ++++++N +I+     G    A++ F  M   G+  D L  + +  A +
Sbjct: 221 EAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVA 280

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
             G       +   ++R       +   + +VD+ ++  +++ A  + +++P + ++  W
Sbjct: 281 QCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDR-DVVSW 339

Query: 480 GTLL 483
            TL+
Sbjct: 340 NTLI 343



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 107/239 (44%), Gaps = 16/239 (6%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM-KRKGLLVDNYTYPFVLK 120
           +D A+++F+ +   +    NT+I GY Q+    +A+  Y +M   +GL     T+  VL 
Sbjct: 321 IDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLP 380

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           A   L GL +G  +H   +K G   DV+V   LI +Y+KCG +  A  +FE    +    
Sbjct: 381 AYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGP 440

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHM 236
           WN ++ G    G   KA  +F +M Q+    D +++  ++       G +   R  F+ M
Sbjct: 441 WNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAAC-SHAGLVDQGRSFFDLM 499

Query: 237 -------PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
                  PI     +  M+D   + G L  A +    MP + +   W  ++     HGN
Sbjct: 500 QTVYGIVPIAK--HYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGN 556


>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
          Length = 596

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 183/559 (32%), Positives = 298/559 (53%), Gaps = 14/559 (2%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLI--TEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           L +LL +     H+ QI   L T+ +        LS+LL    +  T     A RL  Q+
Sbjct: 4   LKTLLDLPLHFLHLKQIHCLLLTSPIFYTRRDLFLSRLLRRCCTAAT-QFRYARRLLCQL 62

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSF--YVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
              +  + +++I  ++      + LSF  Y +M+R G++   +T+P +LKA   L     
Sbjct: 63  QTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRD-SN 121

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
             + H  +VK G   D FV N LI  YS  G    A  +F+G+E KD+V+W  ++ GFV 
Sbjct: 122 PFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVR 181

Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR-------ILFEHMPIK-DLI 242
            G   +A   F EM +    +  + +    K  G +   R       +  E   +K D+ 
Sbjct: 182 NGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVF 241

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
             +S++D Y K      AQ++F+EMP RNV +W+ +I GY Q     + + +F EML   
Sbjct: 242 IGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSD 301

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           V P+  ++   +SACA VGAL  G+ +H +M ++ I ++    T LID+Y+KCG L+EA 
Sbjct: 302 VAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAI 361

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
            +F  + +KNV ++  MI G   +G+  +A   F  M +  +  +++ F+ VL AC+H G
Sbjct: 362 LVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGG 421

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
           L  EG R+F SMK    +E K +HY+C+VDL  R G LE+A  ++E MPM+P   +WG L
Sbjct: 422 LVEEGRRLFLSMKGRFNMELKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGAL 481

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
             +C  H++  L +     +++L+    G Y LL+N+Y+++  W+   R+RK M+ +++ 
Sbjct: 482 FGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVV 541

Query: 543 KETGRSVIEIDGNIKEFVS 561
           K  G S IE+ G + EF++
Sbjct: 542 KSPGFSWIEVKGKLCEFIA 560


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 181/534 (33%), Positives = 300/534 (56%), Gaps = 18/534 (3%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           +A+R+F+ +   +    N++I GY Q+     A   +  M   G+     T   +++ACG
Sbjct: 183 EAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACG 242

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            +  L  G  +HG V+ +G   D+ V+   + MYSK G +  AR VF     ++LVSWN 
Sbjct: 243 GIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNA 302

Query: 184 VLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARIL------- 232
           ++ G V  G +G++ ++F  + +     D  +   ++ G   +   +++ +IL       
Sbjct: 303 MISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGC-SQTASLATGKILHGCAIRS 361

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
           FE     +LI   +++D Y+K G L  A  +FN M +RNV +W+ M+ G AQ+G+ ++AL
Sbjct: 362 FE----SNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDAL 417

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            LF +M  +G+  + ++ +  + +CA +G+L  G+ IH  + R     D++  TAL+DMY
Sbjct: 418 RLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMY 477

Query: 353 MKCGSLDEARRIF-YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
            KCG ++ A RIF +    K+V+ +N MI G GM+G G +A+  + +M  EG+  +   F
Sbjct: 478 AKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTF 537

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           L +L ACSHS L  +G  +F SM+R   I P  +HY+CLVDLLSRAG  E+A  ++E MP
Sbjct: 538 LSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMP 597

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
            +P  A+   LL  CR H+N+ L     + L+ L A + G+Y++LSNIYA+A  W+    
Sbjct: 598 FQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDY 657

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
           IR +MR R +KK  G S++E    +  F +G+      EE+   ++S +++ +E
Sbjct: 658 IRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLES-LRSAVE 710



 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 152/516 (29%), Positives = 264/516 (51%), Gaps = 13/516 (2%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           + N L  L + SK    +    AQ+ TN L T+ F  ++L+ + +   +L  + A  +F+
Sbjct: 31  IHNFLSLLRESSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSL--EAARYVFD 88

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
           Q +QP   + N M+ GY QS   ++ L  +  M+ + L VD+ +  F LKAC   +    
Sbjct: 89  QFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEM 148

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G EI    V+ G   + FV + +I    K G +G A+ VF+G   KD+V WN ++ G+V+
Sbjct: 149 GMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQ 208

Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI-LFEHMPI------KDLIS 243
            G    A ++F EM         I +    +  G I + ++    H  +       D++ 
Sbjct: 209 AGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILV 268

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
             S +D Y+K+GD+ +A+ +F +MP RN+ SW+ MI G  ++G   E+  LF  ++    
Sbjct: 269 LTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSG 328

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
             D+ +++  +  C+Q  +L  GK +H    RS    ++I+ TA++D+Y KCGSL +A  
Sbjct: 329 GFDLTTIVSLLQGCSQTASLATGKILHGCAIRS-FESNLILSTAIVDLYSKCGSLKQATF 387

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           +F  M  +NVI++  M+ GL  NG  E+AL+ FAQM+ EGI  + + F+ ++ +C+H G 
Sbjct: 388 VFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGS 447

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
              G  I   + R  G    + + + LVD+ ++ G++  A  I     +  ++ LW +++
Sbjct: 448 LKRGRSIHGHLFR-LGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMI 506

Query: 484 LACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLS 517
                H +   A  +   ++E  LK +      LLS
Sbjct: 507 TGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLS 542


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 157/425 (36%), Positives = 258/425 (60%), Gaps = 3/425 (0%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D    N L+  +   G    AR +F    ++D+VSWN ++ G  + G + +A+ VF  MP
Sbjct: 79  DAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP 138

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-DLISWNSMIDGYAKIGDLVAAQQLF 264
            ++++SW+ M+ G+   + D+S+A   F + P K D + W +M+ GY  IG++V A + F
Sbjct: 139 VRNSVSWNAMVSGFACSR-DMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYF 197

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGAL 323
             MP RN+ SW+ ++ GY ++ +  +AL LFR M+ +  V+P+  ++   +  C+ + AL
Sbjct: 198 EAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSAL 257

Query: 324 DLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383
             GK IH +  +  ++ ++ V T+L+ MY KCG L  A ++F  M  ++V+++N MI+G 
Sbjct: 258 GFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGY 317

Query: 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443
             +G G+EA+  F +M+ EG+  + + F+ VL AC H+GL   G R F+ M+   GIEP+
Sbjct: 318 AQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPR 377

Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLV 503
           ++HYSC+VDLL RAG+LE+A++++ SMP +P+ + +GTLL ACR ++N+  AE+    L+
Sbjct: 378 VDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLI 437

Query: 504 ELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           E      G YV L+NIYA A  W+   R+R+ M+   + K  G S IEI G + EF S +
Sbjct: 438 EKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSND 497

Query: 564 IFDVQ 568
               Q
Sbjct: 498 RLHPQ 502



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 151/306 (49%), Gaps = 14/306 (4%)

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMI 248
           V  G++  A E F   P+K   +++ ++ GY +  G ++ AR LF+ +P  D +S+N+++
Sbjct: 28  VRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLL 87

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV- 307
             +   GD   A++LF  MP R+V SW+ M+ G ++ G  +EA  +F   L   VR  V 
Sbjct: 88  SCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVF---LAMPVRNSVS 144

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
            + M +  AC++    D+      + + +    D ++ TA++  YM  G++ +A   F +
Sbjct: 145 WNAMVSGFACSR----DMSA-AEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEA 199

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKDDLIFLGVLIACSHSGLATE 426
           M  +N++S+N ++AG   N   ++AL+ F  M  E  +  +      VL+ CS+      
Sbjct: 200 MPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGF 259

Query: 427 GYRIFQ-SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
           G +I Q  MK    +   L   + LV +  + G+L  A  +   M  + ++  W  ++  
Sbjct: 260 GKQIHQWCMK--LPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR-DVVAWNAMISG 316

Query: 486 CRNHQN 491
              H +
Sbjct: 317 YAQHGD 322



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 157/380 (41%), Gaps = 54/380 (14%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           N L+S    S       ++ A +   D+++    +S L  S        +++A+ +F  +
Sbjct: 84  NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGA------VEEAKAVFLAM 137

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
              N+   N M+ G+  S +   A  ++ N   KG                         
Sbjct: 138 PVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKG------------------------- 172

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
                        D  +   ++  Y   G++  A   FE   +++LVSWN V+ G+V+  
Sbjct: 173 -------------DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNS 219

Query: 193 EMGKAREVFDEM-------PQKDAISWSIMIDGYRKKKGDISSARILFEHMPI-KDLISW 244
               A  +F  M       P    +S  ++        G           +P+ ++L   
Sbjct: 220 HADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVG 279

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
            S++  Y K GDL +A +LF EM  R+V +W+ MI GYAQHG+ KEA+ LF  M  +GV 
Sbjct: 280 TSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVE 339

Query: 305 PDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
           P+ I+ +  ++AC   G  D G +      +   I   +   + ++D+  + G L+ A  
Sbjct: 340 PNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVD 399

Query: 364 IFYSMT-KKNVISYNVMIAG 382
           +  SM  + +  +Y  ++A 
Sbjct: 400 LIRSMPFEPHPSAYGTLLAA 419



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 13/182 (7%)

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           + T  +   ++ G L  A   F S  +K   +YN ++AG      G  A    A+   + 
Sbjct: 19  LSTVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYA-RALGRLA---DARHLFDR 74

Query: 404 IPKDDLIFLGVLIACSH-SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
           IP  D +    L++C   SG A    R+F SM         +  ++ +V  LS++G +E+
Sbjct: 75  IPTPDAVSYNTLLSCHFASGDADGARRLFASMPVR-----DVVSWNTMVSGLSKSGAVEE 129

Query: 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522
           A  +  +MP++ N   W  ++      ++++ AE       E    D  L+  + + Y D
Sbjct: 130 AKAVFLAMPVR-NSVSWNAMVSGFACSRDMSAAEEWFRNAPE--KGDAVLWTAMVSGYMD 186

Query: 523 AG 524
            G
Sbjct: 187 IG 188


>gi|242059435|ref|XP_002458863.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
 gi|241930838|gb|EES03983.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
          Length = 544

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 182/522 (34%), Positives = 283/522 (54%), Gaps = 50/522 (9%)

Query: 73  YQPNTYMHNTMIRGY-TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM----G 127
           + P+ + H  ++R Y +QS   + AL +  N+ R+         P +LKA         G
Sbjct: 18  HDPDKWAH--LVREYASQSLLREAALVYARNVPRR--THHQPLLPILLKAAATASPAEPG 73

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS------- 180
           L  G  +H E +K  F  D+ V   ++ MY KCG +  AR  F+    ++++S       
Sbjct: 74  L--GKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAG 131

Query: 181 ------------------------WNLVLRGFVECGEMGKAREVFDEMPQ--KDAISWSI 214
                                   W  ++RGF + G+M +AR  F+  P   +  ++W++
Sbjct: 132 YAAAGDMDGALALFGGMRSWTYVTWATLIRGFAKKGDMAEARRWFETTPPGMRTVVTWTV 191

Query: 215 MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
           ++ GY    GD+ +AR +F+ MP ++   W+SM+ GY K G+   AQ +F+ +P RN+ +
Sbjct: 192 LVHGY-VSAGDMEAAREVFDRMPARNAFVWSSMVTGYFKAGNAEEAQAVFHRIPTRNLVN 250

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W+ +I GYAQ G  ++AL  F  ML + V+PD  ++   +SACAQ+G+L+ GK +H F+ 
Sbjct: 251 WNALIAGYAQIGCSEKALEAFDSMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFIN 310

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
           R  I  +  V   LIDMY KCG L  AR IF  M  KN   +N MI+ L  +G  +EAL 
Sbjct: 311 REHIRKNHFVLNGLIDMYAKCGDLVYARYIFDGMRWKNTECWNTMISALASHGRSDEALH 370

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
            F QME  G   + +  L VL AC+H G   EG RIF  +  + G+E  +EHY CLVDLL
Sbjct: 371 LFFQMEHSGQTPNTITVLAVLGACTHGGFVDEGLRIFNKLDAY-GVEAGVEHYGCLVDLL 429

Query: 455 SRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK----ADDC 510
            RAG+L++A  IV++MP +PN  +WG+LL ACR H +  ++ +V + +  L     + + 
Sbjct: 430 GRAGKLKEAYEIVKNMPEEPNEVIWGSLLGACRVHGDAEMSRLVTDEIHRLHSVHASSND 489

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
             Y++LSNI A +  WE A +IR+ M +  ++K    S +E+
Sbjct: 490 AEYIMLSNIMAASKRWEQAEQIRRKMARHGVEKTPACSSLEL 531



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 8/237 (3%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N ++A+ +F++I   N    N +I GY Q    +KAL  + +M ++ +  D +T   +L 
Sbjct: 232 NAEEAQAVFHRIPTRNLVNWNALIAGYAQIGCSEKALEAFDSMLQERVKPDEFTMASLLS 291

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L +G ++H  + +     + FV+NGLI MY+KCG +  AR +F+G   K+   
Sbjct: 292 ACAQLGSLEQGKKVHDFINREHIRKNHFVLNGLIDMYAKCGDLVYARYIFDGMRWKNTEC 351

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIM---IDGYRKKKGDISSARILFEHMP 237
           WN ++      G   +A  +F +M        +I    + G     G +     +F  + 
Sbjct: 352 WNTMISALASHGRSDEALHLFFQMEHSGQTPNTITVLAVLGACTHGGFVDEGLRIFNKLD 411

Query: 238 IKDLIS----WNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQHGNPK 289
              + +    +  ++D   + G L  A ++   MPE  N   W  ++     HG+ +
Sbjct: 412 AYGVEAGVEHYGCLVDLLGRAGKLKEAYEIVKNMPEEPNEVIWGSLLGACRVHGDAE 468


>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
          Length = 494

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 154/361 (42%), Positives = 232/361 (64%), Gaps = 1/361 (0%)

Query: 218 GYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSI 277
           G   K+G +  AR++F++M  K+ ++WN+MIDGY + G +  A ++F+EMPER++ SW+ 
Sbjct: 114 GMYSKRGHVRKARLVFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKVFDEMPERDLISWTA 173

Query: 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337
           MI G+ + G  +EAL  FREM   GV PD ++++ A++AC  +GAL  G W H ++    
Sbjct: 174 MITGFVKKGFHEEALAWFREMQISGVNPDYVAIIAALAACTNLGALSFGLWAHRYVVSQD 233

Query: 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFA 397
              ++ V  +LID+Y +CG ++ AR++F +M K+ V+S+N +I G   NG   E+L  F 
Sbjct: 234 FRNNVRVSNSLIDLYCRCGCVEFARQVFDTMEKRTVVSWNSVIVGFAANGNANESLVYFR 293

Query: 398 QMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA 457
           +M+ EG   D + F G L ACSH GL  EG++ FQ MK    I P++EH+ CLVDL SRA
Sbjct: 294 KMQEEGFKPDAVTFTGALTACSHVGLVEEGFQYFQMMKTDYRISPRIEHFGCLVDLYSRA 353

Query: 458 GELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT-LAEVVVEGLVELKADDCGLYVLL 516
           G LE A+ +VESMPMKPN  + G+LL ACRNH N T LAE +++ + +L       YV+L
Sbjct: 354 GRLEDAIKVVESMPMKPNEVVIGSLLAACRNHGNHTILAERLMKHISDLDVKGHSNYVIL 413

Query: 517 SNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
           SN+YA  G WE A ++R+ M+   +KK+ G S IEID     F++G+   V++  +  V+
Sbjct: 414 SNMYAADGKWEGASKMRRKMKGLGLKKQPGYSSIEIDDYTHVFMAGDNAHVETAYIREVL 473

Query: 577 Q 577
           +
Sbjct: 474 E 474



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/355 (30%), Positives = 180/355 (50%), Gaps = 55/355 (15%)

Query: 100 YVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE-----IHGEVVKMGF-LCDVFVVNGL 153
           + +M+  G+  ++ T+  +L ACG       G+E     +HG   K+G     V V   +
Sbjct: 56  FSDMRLAGIEPNHITFISLLSACG---NFPSGSEALSDLLHGYACKLGLDRSHVMVGTAI 112

Query: 154 IGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWS 213
           +GMYSK GH+  AR VF+  E K+ V+WN ++ G++  G++  A +VFDEMP++D ISW+
Sbjct: 113 LGMYSKRGHVRKARLVFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKVFDEMPERDLISWT 172

Query: 214 IMIDGYRKKKGDISSARILFEHMPIK----DLIS------------------W------- 244
            MI G+  KKG    A   F  M I     D ++                  W       
Sbjct: 173 AMITGF-VKKGFHEEALAWFREMQISGVNPDYVAIIAALAACTNLGALSFGLWAHRYVVS 231

Query: 245 ----------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
                     NS+ID Y + G +  A+Q+F+ M +R V SW+ +I G+A +GN  E+L  
Sbjct: 232 QDFRNNVRVSNSLIDLYCRCGCVEFARQVFDTMEKRTVVSWNSVIVGFAANGNANESLVY 291

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYM 353
           FR+M  +G +PD ++  GA++AC+ VG ++ G ++  +     RI+  +     L+D+Y 
Sbjct: 292 FRKMQEEGFKPDAVTFTGALTACSHVGLVEEGFQYFQMMKTDYRISPRIEHFGCLVDLYS 351

Query: 354 KCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG----FGEEALKCFAQMETEG 403
           + G L++A ++  SM  K N +    ++A    +G      E  +K  + ++ +G
Sbjct: 352 RAGRLEDAIKVVESMPMKPNEVVIGSLLAACRNHGNHTILAERLMKHISDLDVKG 406



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 10/216 (4%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A ++F+++ + +      MI G+ +    ++AL+++  M+  G+  D       L A
Sbjct: 153 VDNAVKVFDEMPERDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIIAALAA 212

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G   H  VV   F  +V V N LI +Y +CG +  AR VF+  E + +VSW
Sbjct: 213 CTNLGALSFGLWAHRYVVSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDTMEKRTVVSW 272

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMP 237
           N V+ GF   G   ++   F +M ++    DA++++  +       G +      F+ M 
Sbjct: 273 NSVIVGFAANGNANESLVYFRKMQEEGFKPDAVTFTGALTAC-SHVGLVEEGFQYFQMMK 331

Query: 238 IKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP 268
               IS     +  ++D Y++ G L  A ++   MP
Sbjct: 332 TDYRISPRIEHFGCLVDLYSRAGRLEDAIKVVESMP 367


>gi|226496045|ref|NP_001146017.1| uncharacterized protein LOC100279548 [Zea mays]
 gi|219885333|gb|ACL53041.1| unknown [Zea mays]
 gi|414872421|tpg|DAA50978.1| TPA: hypothetical protein ZEAMMB73_118572 [Zea mays]
          Length = 528

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 173/511 (33%), Positives = 273/511 (53%), Gaps = 43/511 (8%)

Query: 84  IRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG---LVEGTEIHGEVVK 140
           IR       P++A++ Y+   R       +    VLK+   L     L     +H  +++
Sbjct: 18  IRAAADQGRPRRAIALYLASLRSSCRPCPFALAAVLKSVPRLPEHAVLPAAASLHAHLLR 77

Query: 141 MGFLCDVFVVNGLIGMYS-------------------------------------KCGHM 163
           +G L   +    L  +YS                                     + G +
Sbjct: 78  LGLLSHPYPHAALSHLYSHLLPPHHNHARGLLDDAPTPLNRHSLVSSNSLLASLLRAGDI 137

Query: 164 GCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK 223
             AR++FE    +D+VSWN ++ G  + G + +A E+FD+MP+ +  SW+ ++ G+   +
Sbjct: 138 PAARAMFEAMPARDVVSWNSMVAGLAKAGHLDEAIEMFDQMPETNVASWNALVSGF-MAQ 196

Query: 224 GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
           G ++ A+ LFE MP ++ +SW +MI GYAK GD+ AA  LF+ M  +++++W+ MI  YA
Sbjct: 197 GHLAQAQELFERMPTRNNVSWITMISGYAKAGDVQAAANLFDRMGSKDLYAWNAMISCYA 256

Query: 284 QHGNPKEALYLFREMLCQG--VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
           Q+G  +EAL +F  ML     V P+  +    ISAC+Q+G L  G W+  FM    + +D
Sbjct: 257 QNGCAREALGIFNRMLKPHIWVVPNEKTFSSVISACSQLGDLRFGLWVENFMGYVGVDLD 316

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
             ++TAL+D+Y K G +D A  +F  +  ++V+SY+ MI G GM+G   EA+  F +M  
Sbjct: 317 DHLRTALVDLYTKSGRMDRAFDLFRGLRSRDVVSYSAMIVGCGMHGKLNEAVGLFKEMSK 376

Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
             I  + + F+G+L A SH+GL  E    F SM     I P +EHY+ +VD+L R G+LE
Sbjct: 377 ARIDPNAVTFVGLLSAYSHAGLLEEARACFTSMTSRYRINPSMEHYTIMVDILGRCGKLE 436

Query: 462 QALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521
           +A  +V  +P+ P+ ++WG LLLACR H N+ L EVV     EL+  + G Y+LL NIYA
Sbjct: 437 EAFQLVMQIPVCPDASVWGALLLACRLHNNIELGEVVASKCFELEPQESGYYILLGNIYA 496

Query: 522 DAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
            A  W+    +RKMM +R + K  G S + +
Sbjct: 497 QAKKWDKVKGLRKMMAERGLSKTPGSSWVHV 527



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 103/219 (47%), Gaps = 12/219 (5%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV--DNYTYPFV 118
           ++  A  LF+++   + Y  N MI  Y Q+   ++AL  +  M +  + V  +  T+  V
Sbjct: 229 DVQAAANLFDRMGSKDLYAWNAMISCYAQNGCAREALGIFNRMLKPHIWVVPNEKTFSSV 288

Query: 119 LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDL 178
           + AC  L  L  G  +   +  +G   D  +   L+ +Y+K G M  A  +F G   +D+
Sbjct: 289 ISACSQLGDLRFGLWVENFMGYVGVDLDDHLRTALVDLYTKSGRMDRAFDLFRGLRSRDV 348

Query: 179 VSWNLVLRGFVECGEMGKAREVFDEMPQ----KDAISWSIMIDGYRKKKGDISSARILFE 234
           VS++ ++ G    G++ +A  +F EM +     +A+++  ++  Y    G +  AR  F 
Sbjct: 349 VSYSAMIVGCGMHGKLNEAVGLFKEMSKARIDPNAVTFVGLLSAY-SHAGLLEEARACFT 407

Query: 235 HMPIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP 268
            M  +  I+     +  M+D   + G L  A QL  ++P
Sbjct: 408 SMTSRYRINPSMEHYTIMVDILGRCGKLEEAFQLVMQIP 446



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/249 (20%), Positives = 98/249 (39%), Gaps = 50/249 (20%)

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRP---DVISVMGAISACAQVGALDLGKWIHV 331
           W++ I   A  G P+ A+ L+   L    RP    + +V+ ++    +   L     +H 
Sbjct: 14  WTLAIRAAADQGRPRRAIALYLASLRSSCRPCPFALAAVLKSVPRLPEHAVLPAAASLHA 73

Query: 332 FMKRSRITMDMIVQTALIDMY-------------------------------------MK 354
            + R  +        AL  +Y                                     ++
Sbjct: 74  HLLRLGLLSHPYPHAALSHLYSHLLPPHHNHARGLLDDAPTPLNRHSLVSSNSLLASLLR 133

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
            G +  AR +F +M  ++V+S+N M+AGL   G  +EA++ F QM    +   + +  G 
Sbjct: 134 AGDIPAARAMFEAMPARDVVSWNSMVAGLAKAGHLDEAIEMFDQMPETNVASWNALVSG- 192

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
            +A  H   A E   +F+ M     +      +  ++   ++AG+++ A N+ + M  K 
Sbjct: 193 FMAQGHLAQAQE---LFERMPTRNNVS-----WITMISGYAKAGDVQAAANLFDRMGSK- 243

Query: 475 NLALWGTLL 483
           +L  W  ++
Sbjct: 244 DLYAWNAMI 252


>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
          Length = 669

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 175/500 (35%), Positives = 280/500 (56%), Gaps = 9/500 (1%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++ +A ++F ++Y+ +     +MI    Q  +  K L     M+ +G++ +  T   +L 
Sbjct: 171 SVKEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLS 230

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           ACG    + EG  ++ +V K G   DV + N LI MY+KCG +  A   F+    +   S
Sbjct: 231 ACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKS 290

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI-LFEHMPIK 239
           WN ++ GFV+  E  +A  +F+EM         I +         +   R  +  H  IK
Sbjct: 291 WNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIK 350

Query: 240 DL------ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
           D       I  NS+I+ YAK GD+ AA+++F  M +++V SW++M+ GY +      A  
Sbjct: 351 DNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFN 410

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           LF EM    V    ++++  +SAC+Q+GALD G+ IH +++   +  D+ +++AL+DMY 
Sbjct: 411 LFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYA 470

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL- 412
           KCG +D A  IF  M  K  +S+N MI GL  NG+G+EA++ F QM     PK D I L 
Sbjct: 471 KCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLK 530

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            VL AC+H G+  EG R F  M    G+ P  EHY C+VDLL RAG L++A + ++ MP+
Sbjct: 531 AVLGACAHVGMVDEGLRYFYLMSS-LGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPI 589

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           +PN  +WG+LL ACR H  + L +V+ + +V +  +D G++VL+SN++A+   W+    +
Sbjct: 590 EPNPVIWGSLLAACRVHHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHV 649

Query: 533 RKMMRKRKIKKETGRSVIEI 552
           R +M  R I+K  G S +++
Sbjct: 650 RGLMGSRGIEKTPGHSSVQV 669



 Score =  242 bits (618), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 170/555 (30%), Positives = 272/555 (49%), Gaps = 17/555 (3%)

Query: 5   AAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL-NMD 63
           A+    +++ L++ L    +  H+ ++  +L    L ++ F   +L+  L SP    +M 
Sbjct: 10  ASQARPIRHHLLAYLDACASRAHLAELHGRLVRAHLTSDSFVAGRLIALLASPAARHDMR 69

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            A ++F+ + QPN ++ N MIRGY+    P+ AL+ +  M+R+G+  DNYT   V+ A  
Sbjct: 70  YARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASA 129

Query: 124 VLMGL---VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
              GL     G  IH  V ++GF  DVFV++GL+  Y     +  A  VFE    +D+VS
Sbjct: 130 AFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVS 189

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGD---ISSARILFEHMP 237
           W  ++    +CG   K  ++  EM  +  I   + I       G    +   R ++  + 
Sbjct: 190 WTSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVG 249

Query: 238 I----KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
                 D+   N++I  Y K G L  A + F  MP R   SW+ +IDG+ Q+   KEAL 
Sbjct: 250 KFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALR 309

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           +F EML  GV PD I+++  +SACAQ+G L  G  +H ++K + I  D I+  +LI+MY 
Sbjct: 310 IFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYA 369

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCG +  A R+F +MTKK+V+S+ VM+ G         A   F +M+   +   ++  + 
Sbjct: 370 KCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVS 429

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           +L ACS  G   +G R   S      +   L   S LVD+ ++ G ++ A  I   M  K
Sbjct: 430 LLSACSQLGALDKG-REIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHK 488

Query: 474 PNL---ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530
             L   A+ G L       + V L + ++E L + K D   L  +L    A  GM +  L
Sbjct: 489 QTLSWNAMIGGLASNGYGKEAVELFDQMLE-LQDPKPDGITLKAVLGAC-AHVGMVDEGL 546

Query: 531 RIRKMMRKRKIKKET 545
           R   +M    +  +T
Sbjct: 547 RYFYLMSSLGVVPDT 561


>gi|242038381|ref|XP_002466585.1| hypothetical protein SORBIDRAFT_01g010380 [Sorghum bicolor]
 gi|241920439|gb|EER93583.1| hypothetical protein SORBIDRAFT_01g010380 [Sorghum bicolor]
          Length = 529

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 157/396 (39%), Positives = 243/396 (61%), Gaps = 3/396 (0%)

Query: 159 KCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDG 218
           + G +  AR++FE    +D+VSWN ++ G  + G + +A E+FD+MP+ +A SW+ ++ G
Sbjct: 134 RAGDITAARAMFEAMPERDVVSWNSMVAGLAKAGHLDEAIELFDQMPETNAASWNALVSG 193

Query: 219 YRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM 278
           +   +G ++ A+ LFE MPI++ +SW +MI GYAK GD+ AA  LF+ M  +++++W+ M
Sbjct: 194 F-MAQGHLAQAQELFERMPIRNNVSWITMISGYAKAGDVQAAANLFDRMDSKDLYAWNAM 252

Query: 279 IDGYAQHGNPKEALYLFREMLCQG--VRPDVISVMGAISACAQVGALDLGKWIHVFMKRS 336
           I  YAQ+G  +EAL +F  ML     V P+  +    ISAC+Q+G L  G W+  FM   
Sbjct: 253 ISCYAQNGCAREALGIFNRMLKPHIWVAPNEKTFSSVISACSQLGDLRFGLWVESFMGYV 312

Query: 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF 396
            + +D  ++TALID+Y K G +D A  +F  +  ++V+SY+ MI G GM+G   EA+  F
Sbjct: 313 GVHLDDHLRTALIDLYTKSGQMDRAFDLFRGLRSRDVVSYSAMIVGCGMHGKLNEAISLF 372

Query: 397 AQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456
            +M    I  + + F+G+L A SH+GL  E    F SM     I P +EHY+ +VD+L R
Sbjct: 373 KEMSKARIDPNAVTFVGLLSAYSHAGLLEEARACFTSMSSKYKINPSMEHYTIMVDILGR 432

Query: 457 AGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLL 516
            G+LE+A  ++  +P+ P+ ++WG LLLACR H N+ L EV      EL+  + G Y+LL
Sbjct: 433 CGKLEEAFQLIMQIPVCPHASVWGALLLACRLHNNIELGEVAASKCFELEPKESGYYILL 492

Query: 517 SNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
            NIYA A  W+    +RKMM +R + K  G S + +
Sbjct: 493 GNIYAQAKKWDKVKGLRKMMAERGLSKTPGSSWVHV 528



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 142/305 (46%), Gaps = 14/305 (4%)

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
           + GD+ AA+ +F  MPER+V SW+ M+ G A+ G+  EA+ LF +M           V G
Sbjct: 134 RAGDITAARAMFEAMPERDVVSWNSMVAGLAKAGHLDEAIELFDQMPETNAASWNALVSG 193

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
            ++      A +L + + +    S ITM        I  Y K G +  A  +F  M  K+
Sbjct: 194 FMAQGHLAQAQELFERMPIRNNVSWITM--------ISGYAKAGDVQAAANLFDRMDSKD 245

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGI--PKDDLIFLGVLIACSHSGLATEGYRI 430
           + ++N MI+    NG   EAL  F +M    I    ++  F  V+ ACS  G    G  +
Sbjct: 246 LYAWNAMISCYAQNGCAREALGIFNRMLKPHIWVAPNEKTFSSVISACSQLGDLRFGLWV 305

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
            +S   + G+       + L+DL +++G++++A ++   +  + ++  +  +++ C  H 
Sbjct: 306 -ESFMGYVGVHLDDHLRTALIDLYTKSGQMDRAFDLFRGLRSR-DVVSYSAMIVGCGMHG 363

Query: 491 NVTLAEVVVEGLVELKADDCGL-YVLLSNIYADAGMWEHALR-IRKMMRKRKIKKETGRS 548
            +  A  + + + + + D   + +V L + Y+ AG+ E A      M  K KI       
Sbjct: 364 KLNEAISLFKEMSKARIDPNAVTFVGLLSAYSHAGLLEEARACFTSMSSKYKINPSMEHY 423

Query: 549 VIEID 553
            I +D
Sbjct: 424 TIMVD 428



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 12/219 (5%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV--DNYTYPFV 118
           ++  A  LF+++   + Y  N MI  Y Q+   ++AL  +  M +  + V  +  T+  V
Sbjct: 230 DVQAAANLFDRMDSKDLYAWNAMISCYAQNGCAREALGIFNRMLKPHIWVAPNEKTFSSV 289

Query: 119 LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDL 178
           + AC  L  L  G  +   +  +G   D  +   LI +Y+K G M  A  +F G   +D+
Sbjct: 290 ISACSQLGDLRFGLWVESFMGYVGVHLDDHLRTALIDLYTKSGQMDRAFDLFRGLRSRDV 349

Query: 179 VSWNLVLRGFVECGEMGKAREVFDEMPQ----KDAISWSIMIDGYRKKKGDISSARILFE 234
           VS++ ++ G    G++ +A  +F EM +     +A+++  ++  Y    G +  AR  F 
Sbjct: 350 VSYSAMIVGCGMHGKLNEAISLFKEMSKARIDPNAVTFVGLLSAY-SHAGLLEEARACFT 408

Query: 235 HMPIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP 268
            M  K  I+     +  M+D   + G L  A QL  ++P
Sbjct: 409 SMSSKYKINPSMEHYTIMVDILGRCGKLEEAFQLIMQIP 447



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 100/251 (39%), Gaps = 53/251 (21%)

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRP---DVISVMGAISACAQVGALDLGKWIHV 331
           W+I I   A  G P  A+ L+   L    RP    + +V+ ++    +  AL     +H 
Sbjct: 14  WTITIRAAADQGRPLRAIALYLASLRSSCRPCPFALAAVLKSVPRLPEHDALPAAASLHG 73

Query: 332 FMKRSRITMDMIVQTALIDMY--------------------------------------M 353
            + R  +        AL  +Y                                      +
Sbjct: 74  HLLRLGLLSHPYPHAALSHLYSRLLPPHHDHARGLLDDAPAALHSHSRLVSSNSLLASLL 133

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM-ETEGIPKDDLIFL 412
           + G +  AR +F +M +++V+S+N M+AGL   G  +EA++ F QM ET     + L+  
Sbjct: 134 RAGDITAARAMFEAMPERDVVSWNSMVAGLAKAGHLDEAIELFDQMPETNAASWNALV-- 191

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
              +A  H   A E   +F+ M     +      +  ++   ++AG+++ A N+ + M  
Sbjct: 192 SGFMAQGHLAQAQE---LFERMPIRNNVS-----WITMISGYAKAGDVQAAANLFDRMDS 243

Query: 473 KPNLALWGTLL 483
           K +L  W  ++
Sbjct: 244 K-DLYAWNAMI 253


>gi|347954508|gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
          Length = 447

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 155/362 (42%), Positives = 232/362 (64%), Gaps = 1/362 (0%)

Query: 216 IDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
           I G   K+G    AR++F++M  K+ ++WN+MIDGY + G +  A +LF+EM  R++ SW
Sbjct: 62  ILGMYSKRGRFRKARLIFDYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISW 121

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
           + M++G+ + G  +EAL  FREM   GV+PD ++++ A++AC  +GAL  G WIH ++  
Sbjct: 122 TAMVNGFVKKGFHEEALSWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVMS 181

Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
                ++ V  +LID+Y +CG ++ AR++F  M K+ V+S+N +I G   NG   E+L  
Sbjct: 182 QDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLFY 241

Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           F +M+ EG   D + F G L ACSH GL  EG R FQ+MKR   I P++EHY C+VDL S
Sbjct: 242 FRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYRISPRIEHYGCIVDLYS 301

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT-LAEVVVEGLVELKADDCGLYV 514
           RAG LE AL +V+SMPMKPN  + G+LL AC+NH N T LAE +++ L +L       YV
Sbjct: 302 RAGRLEDALKVVQSMPMKPNEVVIGSLLAACKNHGNNTLLAERLMKHLSDLNVKSHSNYV 361

Query: 515 LLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELEL 574
           +LSN+YA  G WE A ++R+ M+   +KK+ G S IEID     F++G+   V++  +  
Sbjct: 362 ILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDECTHVFMAGDSAHVETANIRE 421

Query: 575 VI 576
           ++
Sbjct: 422 IL 423



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 162/315 (51%), Gaps = 44/315 (13%)

Query: 100 YVNMKRKGLLVDNYTYPFVLKACGVLMGLVE--GTEIHGEVVKMGF-LCDVFVVNGLIGM 156
           + +M+  G+  ++ T+  +L  CG      E  G  +HG   K+G     V V   ++GM
Sbjct: 6   FSDMRFAGVEPNHITFIALLSGCGDFPSGSEALGDLLHGYACKLGLDRTHVMVGTAILGM 65

Query: 157 YSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMI 216
           YSK G    AR +F+  E K+ V+WN ++ G++  G++  A ++FDEM  +D ISW+ M+
Sbjct: 66  YSKRGRFRKARLIFDYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTAMV 125

Query: 217 DGYRKKKGDISSARILFEHMPIK----DLIS------------------W---------- 244
           +G+  KKG    A   F  M I     D ++                  W          
Sbjct: 126 NGF-VKKGFHEEALSWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVMSQDF 184

Query: 245 -------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
                  NS+ID Y + G +  A+Q+F++M +R V SW+ +I G+A +GN  E+L+ FR+
Sbjct: 185 KNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLFYFRK 244

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS-RITMDMIVQTALIDMYMKCG 356
           M  +G +PD ++  GA++AC+ VG ++ G      MKR  RI+  +     ++D+Y + G
Sbjct: 245 MQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYRISPRIEHYGCIVDLYSRAG 304

Query: 357 SLDEARRIFYSMTKK 371
            L++A ++  SM  K
Sbjct: 305 RLEDALKVVQSMPMK 319



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 109/236 (46%), Gaps = 11/236 (4%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ A +LF+++   +      M+ G+ +    ++ALS++  M+  G+  D       L A
Sbjct: 103 VNTAVKLFDEMLNRDLISWTAMVNGFVKKGFHEEALSWFREMQISGVKPDYVAIIAALAA 162

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G  IH  V+   F  +V V N LI +Y +CG +  AR VF+  E + +VSW
Sbjct: 163 CTNLGALSFGLWIHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSW 222

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMP 237
           N V+ GF   G   ++   F +M ++    DA++++  +       G +      F+ M 
Sbjct: 223 NSVIVGFAANGNAHESLFYFRKMQEEGFKPDAVTFTGALTAC-SHVGLVEEGLRYFQTMK 281

Query: 238 IKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQHGN 287
               IS     +  ++D Y++ G L  A ++   MP + N      ++     HGN
Sbjct: 282 RDYRISPRIEHYGCIVDLYSRAGRLEDALKVVQSMPMKPNEVVIGSLLAACKNHGN 337


>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
 gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
          Length = 506

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 143/336 (42%), Positives = 225/336 (66%)

Query: 226 ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
           ++ AR +F  M ++D+++WN MI GY K GDL  A++LF+ MPERNV SW+ +I GYAQ 
Sbjct: 130 VADARSVFHEMAVRDVVAWNVMIAGYVKAGDLAHARELFDAMPERNVVSWTTVIGGYAQM 189

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
             P+EA+ +FR M  +G+ PD ++++  +SAC  +GA+DLG+W+H F+ R  +  ++ + 
Sbjct: 190 RRPEEAVEVFRRMQVEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLM 249

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
            ++IDMYMKCG +++A  +F  M +K+V+++  +IAG  ++G G +A++ F +ME E + 
Sbjct: 250 NSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFRRMERENMA 309

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
            +D+ FL +L ACSH GL   G   F  M     I+P++EHY C+VDLL RAG L++A +
Sbjct: 310 PNDVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQD 369

Query: 466 IVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM 525
           +V+ MP+K N A+WG LL A R H +  L E  +  L+EL+  + G Y+LLSNI+A+   
Sbjct: 370 LVKDMPLKANAAIWGALLAASRTHGDADLGEEALVHLIELEPSNSGNYILLSNIFAEQER 429

Query: 526 WEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
           W+   ++RK M++R ++   G S IE+DG + EF S
Sbjct: 430 WDDVSKLRKAMKERGLRNVPGASSIEVDGMVHEFTS 465



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 197/434 (45%), Gaps = 85/434 (19%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMS---LTSPNTLNMDQAERLFNQ 71
           L+S L    +  H+LQ  A L        P  +S L+++   L        D A  L  +
Sbjct: 14  LLSFLPRLTSPRHLLQAHAFLLPRGGHRHPRLVSALILASLRLVPHPQQTSDHAAALLRR 73

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           ++ P+ Y+              + A     ++ R+ LL                     G
Sbjct: 74  VH-PSVYL--------------RAAARLPSHLLRRSLL---------------------G 97

Query: 132 TEIHGEVVKMGFLC-DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
            ++H  +++ G +  D  V   L+ +Y  C H+  ARSVF    ++D+V+WN+++ G+V+
Sbjct: 98  PQLHSLLLRTGHVASDTHVSASLVQLYCTCRHVADARSVFHEMAVRDVVAWNVMIAGYVK 157

Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK----------- 239
            G++  ARE+FD MP+++ +SW+ +I GY + +    +  + F  M ++           
Sbjct: 158 AGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEV-FRRMQVEGIEPDGVALLS 216

Query: 240 -----------DLISW-----------------NSMIDGYAKIGDLVAAQQLFNEMPERN 271
                      DL  W                 NS+ID Y K G +  A ++F  M E++
Sbjct: 217 VLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKS 276

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW-IH 330
           V +W+ +I G+A HG   +A+ +FR M  + + P+ ++ +  +SAC+ VG  DLG+W  +
Sbjct: 277 VVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAILSACSHVGLTDLGRWYFN 336

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG-- 387
           + + + RI   +     ++D+  + G L EA+ +   M  K N   +  ++A    +G  
Sbjct: 337 IMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMPLKANAAIWGALLAASRTHGDA 396

Query: 388 -FGEEALKCFAQME 400
             GEEAL    ++E
Sbjct: 397 DLGEEALVHLIELE 410


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 175/532 (32%), Positives = 310/532 (58%), Gaps = 9/532 (1%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A RLF  + Q +    N MI G  Q+    +A   + +M+R G   D+ T   +L A
Sbjct: 293 LDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPA 352

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
              L GL +G E+HG +V+     DVF+V+ L+ +Y KC  +  A+++++ +   D+V  
Sbjct: 353 LTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIG 412

Query: 182 NLVLRGFVECGEMGKAREVF----DEMPQKDAISWSIMIDGYRKKK----GDISSARILF 233
           + ++ G+V  G   +A ++F    ++  + +A++ + ++ G         G      +L 
Sbjct: 413 STMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLR 472

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
                K  +  ++++D YAK G L  +  +F +M +++  +W+ MI  ++Q+G P+EAL 
Sbjct: 473 NAYERKCYVE-SALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALD 531

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           LFR+M  +G++ + I++  A+SACA + A+  GK IH    +  I  D+  ++ALIDMY 
Sbjct: 532 LFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYA 591

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCG+L+ A R+F  M  KN +S+N +I+  G +G  +E++     M+ EG   D + FL 
Sbjct: 592 KCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLA 651

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           ++ AC+H+GL  EG ++FQ M +   I P++EH++C+VDL SR+G+L++A+  +  MP K
Sbjct: 652 LISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFK 711

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
           P+  +WG LL ACR H+NV LA++  + L +L   + G YVL+SNI A AG W+   ++R
Sbjct: 712 PDAGIWGALLHACRVHRNVELADIASQELFKLDPANSGYYVLMSNINAVAGRWDGVSKVR 771

Query: 534 KMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
           ++M+  KI K  G S ++++ +   FV+ +    +SE++   +++ ++   E
Sbjct: 772 RLMKDNKILKIPGYSWVDVNNSSHLFVASDKSHPESEDIYTSLKTLLQELRE 823



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 143/492 (29%), Positives = 240/492 (48%), Gaps = 22/492 (4%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +  A   F+ I + +  + N M+ G  ++ +   A+  + NM+  G   +  T    L  
Sbjct: 192 LGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSV 251

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C     L+ G ++H   VK G   +V V N L+ MY+KC  +  A  +FE     DLV+W
Sbjct: 252 CATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTW 311

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR-------ILFE 234
           N ++ G V+ G   +A  +F +M +  A   SI +        D++  +        +  
Sbjct: 312 NGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVR 371

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
           +    D+   ++++D Y K  D+  AQ L++     +V   S MI GY  +G  +EAL +
Sbjct: 372 NCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQM 431

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           FR +L Q ++P+ +++   +  CA + AL LG+ IH ++ R+       V++AL+DMY K
Sbjct: 432 FRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAK 491

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG LD +  IF  M++K+ +++N MI+    NG  +EAL  F QM  EGI  +++     
Sbjct: 492 CGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAA 551

Query: 415 LIACS-----HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
           L AC+     + G    G  I   +K     E      S L+D+ ++ G LE AL + E 
Sbjct: 552 LSACASLPAIYYGKEIHGVTIKGPIKADIFAE------SALIDMYAKCGNLELALRVFEF 605

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLSNIYADAGMWE 527
           MP K N   W +++ A   H  V  +  ++ G+ E   K D      L+S   A AG+ E
Sbjct: 606 MPDK-NEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISAC-AHAGLVE 663

Query: 528 HALRIRKMMRKR 539
             +++ + M K+
Sbjct: 664 EGVQLFQCMTKK 675



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 141/530 (26%), Positives = 249/530 (46%), Gaps = 54/530 (10%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNM--KRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEV 138
           N +IRG+T +     A+ FYV M         D +T P+V+K+C  L  +  G  +H   
Sbjct: 108 NWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTA 167

Query: 139 VKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAR 198
             +G   DV+V + L+ MY+  G +G AR  F+G   +D V WN+++ G ++ G++  A 
Sbjct: 168 RAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAV 227

Query: 199 EVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-----DLISWNSMID 249
            +F  M     + +  + +  +         +S A++    + +K     ++   N+++ 
Sbjct: 228 RLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQL--HSLAVKCGLEPEVAVANTLLA 285

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
            YAK   L  A +LF  MP+ ++ +W+ MI G  Q+G   EA  LF +M   G RPD I+
Sbjct: 286 MYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSIT 345

Query: 310 VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369
           ++  + A   +  L  GK +H ++ R+ + MD+ + +AL+D+Y KC  +  A+ ++ +  
Sbjct: 346 LVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAAR 405

Query: 370 KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS-----GLA 424
             +V+  + MI+G  +NG  EEAL+ F  +  + I  + +    VL  C+       G  
Sbjct: 406 AIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQ 465

Query: 425 TEGYRIFQSMKRHCGIEP------------KLEHY-------------SCLVDLLSRAGE 459
             GY +  + +R C +E              L HY             + ++   S+ G+
Sbjct: 466 IHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGK 525

Query: 460 LEQALNIVESMPM---KPNLALWGTLLLACRNHQNVTLAE----VVVEGLVELKADDCGL 512
            ++AL++   M M   K N       L AC +   +   +    V ++G   +KAD    
Sbjct: 526 PQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKG--PIKADIFAE 583

Query: 513 YVLLSNIYADAGMWEHALRIRKMM-RKRKIKKETGRSVIEIDGNIKEFVS 561
             L+ ++YA  G  E ALR+ + M  K ++   +  S     G +KE VS
Sbjct: 584 SALI-DMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVS 632



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 166/368 (45%), Gaps = 18/368 (4%)

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCD---VFVVNGLIGMYSKCGHMGCARSVFEG-- 172
           VL+ C     L  G +IH   V  G L D   + +   L+GMY        A +VF    
Sbjct: 38  VLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSALP 97

Query: 173 -SEIKDLVSWNLVLRGFVECGEMGKAREVFDEM------PQKDAISWSIMIDGYRKKKGD 225
            +     + WN ++RGF   G+   A   + +M      P  DA +   ++       G 
Sbjct: 98  RAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSC-AALGA 156

Query: 226 ISSARILFEHMPI----KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           +S  R++           D+   ++++  YA  G L  A+  F+ +PER+   W++M+DG
Sbjct: 157 MSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDG 216

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
             + G+   A+ LFR M   G  P+  ++   +S CA    L  G  +H    +  +  +
Sbjct: 217 CIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPE 276

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
           + V   L+ MY KC  LD+A R+F  M + +++++N MI+G   NG   EA   F  M+ 
Sbjct: 277 VAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQR 336

Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
            G   D +  + +L A +      +G  +   + R+C +   +   S LVD+  +  ++ 
Sbjct: 337 SGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNC-VNMDVFLVSALVDIYFKCRDVR 395

Query: 462 QALNIVES 469
            A N+ ++
Sbjct: 396 MAQNLYDA 403


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 194/624 (31%), Positives = 328/624 (52%), Gaps = 88/624 (14%)

Query: 23  KTTTHILQILAQLTTN-DLITEPFTLSQLLMSLTS---PNTLNMDQAERLFNQIYQPNTY 78
           +T     ++ A+LTT+  L+  P +   LL SL +   P+ L++  A  LF+++  P+T+
Sbjct: 10  RTVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRM-PPSTF 68

Query: 79  MHNTMIRGYTQS-SNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM---GLVEGTEI 134
           + +T +R  +++ S+P +    +  M+R G+  D +T+ F+ K          L+  T +
Sbjct: 69  LFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTML 128

Query: 135 HGEVVK-MGFLCDVFVVNGLIGMYSKCGHMGCARSVFE---------------------- 171
           H   ++ M      FV N LI MY + G    AR  F+                      
Sbjct: 129 HAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGM 188

Query: 172 ---------GSEIKDLVSWNLVLRGFVECG------------------------------ 192
                     + ++D++SW  ++  +                                  
Sbjct: 189 LCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSA 248

Query: 193 -------EMGKAREVFDE---MPQKDAISWSIMIDGYRKKKGDISSARILFEHM---PIK 239
                  E+G++  +  E   MP  + +  + +ID Y  K GD   A+ +F+ +   P  
Sbjct: 249 CAKLKDLELGRSLHLLVEEKGMPTSENLVVA-LIDMY-AKCGDFGHAQQVFDALGRGPRP 306

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
              SWN++IDGY K G +  A+ LF+EM  R++ +++ M+ GY   G  +EAL LF  M 
Sbjct: 307 Q--SWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMR 364

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
              +R D  +V+  ++ACA +GAL  G+ +H  +++  +  D+ + TAL+DMYMKCG +D
Sbjct: 365 RHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVD 424

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           EA  +F  M K++V ++  MIAGL  NG G+ AL+ F QM  +G   + + ++ VL ACS
Sbjct: 425 EATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACS 484

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           HS L  EG   F  M+    I P++EHY C++DLL R+G L++A+++V++MP++PN  +W
Sbjct: 485 HSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIW 544

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
            ++L ACR H+++ LA+   E L++L+ D+ G+YV L NIY D+  WE+A +IR +M +R
Sbjct: 545 ASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEER 604

Query: 540 KIKKETGRSVIEIDGNIKEFVSGE 563
           ++KK  G S I + G + +FV  +
Sbjct: 605 QVKKTAGYSSITVAGQVHKFVVSD 628


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 174/534 (32%), Positives = 295/534 (55%), Gaps = 17/534 (3%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK---GLLVDNYTYPF 117
           +++ A + F+++ +      N +I GY+++ + + AL  Y +M  K   G+  D  T+  
Sbjct: 109 DLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSS 168

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
            L AC V+  + +G EI    V  G+  D  V N LI MYSKCG +  AR VF+  + +D
Sbjct: 169 ALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRD 228

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARILF 233
           +++WN ++ G+ + G   +A E+F  M    P+ + +++  ++      + D+   R + 
Sbjct: 229 VIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLE-DLEQGRAIH 287

Query: 234 ----EHMPIKDLISWNSMIDGYAKIGD-LVAAQQLFNEMPERNVFSWSIMIDGYAQHGNP 288
               EH    DL+  N +++ Y K    L  A+Q+F  +  R+V +W+I+I  Y Q+G  
Sbjct: 288 RKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQA 347

Query: 289 KEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTAL 348
           K+AL +F++M  + V P+ I++   +SACA +GA   GK +H  +   R   D++++ +L
Sbjct: 348 KDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSL 407

Query: 349 IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD 408
           ++MY +CGSLD+   +F ++  K+++S++ +IA    +G     L+ F ++  EG+  DD
Sbjct: 408 MNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADD 467

Query: 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468
           +  +  L ACSH G+  EG + F SM    G+ P   H+ C+VDLLSRAG LE A N++ 
Sbjct: 468 VTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIH 527

Query: 469 SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA-DDCGLYVLLSNIYADAGMWE 527
            MP  P+   W +LL  C+ H +   A  V + L EL++ D+     LLSN+YA+AG W+
Sbjct: 528 DMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWD 587

Query: 528 HALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
               +RK   +R  +K  G S IEI+  + EFV+G+    + E +   I+   K
Sbjct: 588 D---VRKTRNRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSK 638



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 130/469 (27%), Positives = 239/469 (50%), Gaps = 26/469 (5%)

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           +F+ I  PN+     ++  + ++ + ++AL +Y  M  +GL  D   +   +  C     
Sbjct: 14  VFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKD 73

Query: 128 LVEGTEIHGEVVKMGFL-CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
           L +G  +H  +++   L  D+ +   LI MY++C  +  AR  F+    K LV+WN ++ 
Sbjct: 74  LKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIA 133

Query: 187 GFVECGEMGKAREVFDEMPQK-------DAISWSIMIDGYRKKKGDISSARILFEHMP-- 237
           G+   G+   A +++ +M  K       DAI++S  +       GDIS  R +       
Sbjct: 134 GYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYAC-SVVGDISQGREIEARTVAS 192

Query: 238 --IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
               D I  N++I+ Y+K G L +A+++F+ +  R+V +W+ MI GYA+ G   +AL LF
Sbjct: 193 GYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELF 252

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
           + M     +P+V++ +G ++AC  +  L+ G+ IH  +K      D+++   L++MY KC
Sbjct: 253 QRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKC 312

Query: 356 -GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
             SL+EAR++F  +  ++VI++N++I      G  ++AL  F QM+ E +  +++    V
Sbjct: 313 SSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNV 372

Query: 415 LIACSHSGLATEGYRIFQSMKR-HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           L AC+  G   +G  +   +    C  +  LE  + L+++ +R G L+  + +  ++  K
Sbjct: 373 LSACAVLGAKRQGKAVHALIASGRCKADVVLE--NSLMNMYNRCGSLDDTVGVFAAIRDK 430

Query: 474 PNLALWGTLLLACRNHQNVTLA-----EVVVEGLVELKADDCGLYVLLS 517
            +L  W TL+ A   H +         E++ EGL    ADD  +   LS
Sbjct: 431 -SLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLA---ADDVTMVSTLS 475



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 185/342 (54%), Gaps = 14/342 (4%)

Query: 156 MYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE----MGKAREVFDEMPQKDAIS 211
           MY KCG +  A +VF   E  + VSW L++  F   G     +G  R +  E  + D   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 212 WSIMI----DGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
           + + I         K+G +  A IL   +   D+I   ++I  YA+  DL  A++ F+EM
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLC---QGVRPDVISVMGAISACAQVGALD 324
            ++ + +W+ +I GY+++G+ + AL ++++M+    +G++PD I+   A+ AC+ VG + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
            G+ I      S    D IVQ ALI+MY KCGSL+ AR++F  +  ++VI++N MI+G  
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444
             G   +AL+ F +M       + + F+G+L AC++     +G  I + +K H G E  L
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEH-GYESDL 299

Query: 445 EHYSCLVDLLSR-AGELEQALNIVESMPMKPNLALWGTLLLA 485
              + L+++ ++ +  LE+A  + E +  + ++  W  L++A
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERLRTR-DVITWNILIVA 340



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 118/256 (46%), Gaps = 9/256 (3%)

Query: 45  FTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMK 104
             +  +L+++ +  + ++++A ++F ++   +    N +I  Y Q    + AL  +  M+
Sbjct: 299 LVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQ 358

Query: 105 RKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG 164
            + +  +  T   VL AC VL    +G  +H  +       DV + N L+ MY++CG + 
Sbjct: 359 LENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLD 418

Query: 165 CARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAI----SWSIMI 216
               VF     K LVSW+ ++  + + G      E F E+ Q+    D +    + S   
Sbjct: 419 DTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACS 478

Query: 217 DGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSW 275
            G   K+G  S   ++ +H    D   +  M+D  ++ G L AA+ L ++MP   +  +W
Sbjct: 479 HGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAW 538

Query: 276 SIMIDGYAQHGNPKEA 291
           + ++ G   H + K A
Sbjct: 539 TSLLSGCKLHNDTKRA 554


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 187/565 (33%), Positives = 296/565 (52%), Gaps = 63/565 (11%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKG-----LLVDNYT---- 114
           +A++LF+++   N    N+++ GYT++   Q  L F+  M  +      L+VD Y     
Sbjct: 158 EAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGD 217

Query: 115 ------------YPFVLKACGVLMG------LVEGTEIHGEVVKMGFLCDVFVVNGLIGM 156
                        P V+    +L G      + E   +  E+     +      N +IG 
Sbjct: 218 LDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVS----WNAMIGA 273

Query: 157 YSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK--------- 207
           Y +   +  A  +F     KD VSW  ++ G+V  G++ +ARE+ + MP K         
Sbjct: 274 YVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMI 333

Query: 208 ----------------------DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWN 245
                                 D++ W+ MI GY    G    A  LF+ M  KD++SWN
Sbjct: 334 NGYLQSGRMDEANEIFSQISVRDSVCWNSMITGY-AHCGRTDEALRLFQEMVCKDMVSWN 392

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           +MI  YA+ G +  A ++FNEM ERNV SW+ +I GY Q+G   EAL  F  M  QG +P
Sbjct: 393 TMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKP 452

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D  +++  + A A + AL++G  +H    ++    D+ V+ A++ MY K G + EA  +F
Sbjct: 453 DQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVF 512

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
             +  K+V+S+N +IAG  +NG G+EA++ F  M   GI  D++ F G+L AC+H G   
Sbjct: 513 AEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVD 572

Query: 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
           +G  +F+SM     I+P+ EHY+C+++LL R G LE+A+ IV+ M    +  +WG LL A
Sbjct: 573 QGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWA 632

Query: 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
           CR H N+ LA+   E L+ L+  +   YVLLSN++A+AG W+   R+R +M++ K +K+ 
Sbjct: 633 CRIHHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMKENKAEKQP 692

Query: 546 GRSVIEIDGNIKEFVSGEIFDVQSE 570
           G S IEID  +  F+S    D++ E
Sbjct: 693 GCSWIEIDNQLHCFLSKAPPDLRPE 717



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 126/478 (26%), Positives = 223/478 (46%), Gaps = 39/478 (8%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           +N  +S L  S      + +  Q+T  +++T    +S    +    N      A  LF+ 
Sbjct: 18  QNLRISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIAN------ARELFDL 71

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           + Q N    N+MI GY  +   + A   +  M ++    D Y++  ++     +  L + 
Sbjct: 72  MPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKR----DIYSWTLMITCYTRIGELEKA 127

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            E+   +       D    N LI  Y+K      A+ +F+   +K++VSWN +L G+ + 
Sbjct: 128 RELFNLLPDKQ---DTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKN 184

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGY 251
           G+M    + F+ M +++ +SW++M+DGY    GD+ SA + F+ +P  +++SW +M+ G+
Sbjct: 185 GKMQLGLQFFEAMGERNVVSWNLMVDGY-VGVGDLDSAWMFFKKIPTPNVVSWVTMLSGF 243

Query: 252 AKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
           A  G +  A+ LFNEMP +N+ SW+ MI  Y +     +A  LF EM       D +S  
Sbjct: 244 AHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEM----PEKDSVSWT 299

Query: 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
             I+   +VG L   + I   M    I      QTA+I+ Y++ G +DEA  IF  ++ +
Sbjct: 300 AMINGYVRVGKLLQAREILNLMPYKNIA----AQTAMINGYLQSGRMDEANEIFSQISVR 355

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           + + +N MI G    G  +EAL+ F +M    + KD + +  ++ A + +G   +   +F
Sbjct: 356 DSVCWNSMITGYAHCGRTDEALRLFQEM----VCKDMVSWNTMIAAYAQAGQMDKALEMF 411

Query: 432 QSMKRHCGIEPK------------LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
             M+    +                E  +C + L+ + GE      IV  +    NLA
Sbjct: 412 NEMQERNVVSWNSLITGYVQNGLYFEALNCFI-LMKQQGEKPDQTTIVCCLRASANLA 468



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 103/426 (24%), Positives = 187/426 (43%), Gaps = 103/426 (24%)

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
           VF  N  I    + G +  A +VF     +++V++N ++  + + G +  ARE+FD MPQ
Sbjct: 15  VFTQNLRISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMPQ 74

Query: 207 KDAISWSIMIDGYRKKK------------------------------GDISSARILFEHM 236
           ++ +SW+ MI GY   +                              G++  AR LF  +
Sbjct: 75  RNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLL 134

Query: 237 P--------------------------------IKDLISWNSMIDGYAKIGDLVAAQQLF 264
           P                                +K+++SWNS++ GY K G +    Q F
Sbjct: 135 PDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFF 194

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL- 323
             M ERNV SW++M+DGY   G+   A   F+++      P+V+S +  +S  A  G + 
Sbjct: 195 EAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPT----PNVVSWVTMLSGFAHYGRMT 250

Query: 324 ------------DLGKW---IHVFMKRSRIT-----------MDMIVQTALIDMYMKCGS 357
                       +L  W   I  +++ ++I             D +  TA+I+ Y++ G 
Sbjct: 251 EARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGK 310

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
           L +AR I   M  KN+ +   MI G   +G  +EA + F+Q+      +D + +  ++  
Sbjct: 311 LLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISV----RDSVCWNSMITG 366

Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
            +H G   E  R+FQ M     +   +  ++ ++   ++AG++++AL +   M  + N+ 
Sbjct: 367 YAHCGRTDEALRLFQEM-----VCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQER-NVV 420

Query: 478 LWGTLL 483
            W +L+
Sbjct: 421 SWNSLI 426


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 194/621 (31%), Positives = 327/621 (52%), Gaps = 88/621 (14%)

Query: 23  KTTTHILQILAQLTTN-DLITEPFTLSQLLMSLTS---PNTLNMDQAERLFNQIYQPNTY 78
           +T     ++ A+LTT+  L+  P +   LL SL +   P+ L++  A  LF+++  P+T+
Sbjct: 10  RTVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRM-PPSTF 68

Query: 79  MHNTMIRGYTQS-SNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM---GLVEGTEI 134
           + +T +R  +++ S+P +    +  M+R G+  D +T+ F+ K          L+  T +
Sbjct: 69  LFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTML 128

Query: 135 HGEVVK-MGFLCDVFVVNGLIGMYSKCGHMGCARSVFE---------------------- 171
           H   ++ M      FV N LI MY + G    AR  F+                      
Sbjct: 129 HAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGM 188

Query: 172 ---------GSEIKDLVSWNLVLRGFVECG------------------------------ 192
                     + ++D++SW  ++  +                                  
Sbjct: 189 LCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSA 248

Query: 193 -------EMGKAREVFDE---MPQKDAISWSIMIDGYRKKKGDISSARILFEHM---PIK 239
                  E+G++  +  E   MP  + +  + +ID Y  K GD   A+ +F+ +   P  
Sbjct: 249 CAKLKDLELGRSLHLLVEEKGMPTSENLVVA-LIDMY-AKCGDFGHAQQVFDALGRGPRP 306

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
              SWN++IDGY K G +  A+ LF+EM  R++ +++ M+ GY   G  +EAL LF  M 
Sbjct: 307 Q--SWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMR 364

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
              +R D  +V+  ++ACA +GAL  G+ +H  +++  +  D+ + TAL+DMYMKCG +D
Sbjct: 365 RHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVD 424

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           EA  +F  M K++V ++  MIAGL  NG G+ AL+ F QM  +G   + + ++ VL ACS
Sbjct: 425 EATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACS 484

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           HS L  EG   F  M+    I P++EHY C++DLL R+G L++A+++V++MP++PN  +W
Sbjct: 485 HSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIW 544

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
            ++L ACR H+++ LA+   E L++L+ D+ G+YV L NIY D+  WE+A +IR +M +R
Sbjct: 545 ASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEER 604

Query: 540 KIKKETGRSVIEIDGNIKEFV 560
           ++KK  G S I + G + +FV
Sbjct: 605 QVKKTAGYSSITVAGQVHKFV 625


>gi|115479089|ref|NP_001063138.1| Os09g0407800 [Oryza sativa Japonica Group]
 gi|51091508|dbj|BAD36246.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|51091564|dbj|BAD36301.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113631371|dbj|BAF25052.1| Os09g0407800 [Oryza sativa Japonica Group]
 gi|215740507|dbj|BAG97163.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 612

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 159/408 (38%), Positives = 266/408 (65%), Gaps = 4/408 (0%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D    N L+    + G +  AR +F+    +D+VS+N ++ G+V  G++  AR +FD M 
Sbjct: 156 DAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAEGDLAGARNLFDGMA 215

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
           ++D ++W+ MI GY  + GD+ +AR +F+ MP +D++SWNSM+DGYA+ GD+  A+ +F+
Sbjct: 216 RRDVVTWNSMISGY-SRHGDMENARKMFDAMPERDVVSWNSMLDGYAQAGDVEMARLVFD 274

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALD 324
            MP+R++ SW++++  YA+  + +E L LF  M+ +G   P+  + +  ++ACA +G L+
Sbjct: 275 GMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACANLGDLE 334

Query: 325 LGKWIHVFMKR--SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
            G+W+H  ++    R+  D+++ T L+ MY KCG ++ AR IF SM +K+V S+N MI G
Sbjct: 335 KGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFNSMGEKSVPSWNSMIIG 394

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
            G++G  E+AL+ F +ME +G   ++  F+ VL +C+H GL  EG+  F  M R   IEP
Sbjct: 395 YGLHGQSEKALELFLEMERDGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRFYSIEP 454

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
           K EH+ C++DLL RAG LEQ+ N++E++  K + ALWG L+ A +   N+ L E V + L
Sbjct: 455 KSEHFGCMMDLLGRAGLLEQSENLIENLQGKVSEALWGILMSASQTQNNIKLGEFVGKKL 514

Query: 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           +E++  + G Y+LLSNIYA  G W+   ++RK+M ++ ++K+ G S++
Sbjct: 515 IEMRPTEVGPYILLSNIYAAEGRWDDVEKVRKVMEEKGVEKDAGLSLV 562



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 144/352 (40%), Gaps = 105/352 (29%)

Query: 44  PFTLSQLLMSLTSPNTLN-------------MDQAERLFNQIYQPNTYMHNTMIRGYTQS 90
           P +  +LL  +  P+ +              +  A RLF+++ + +   +N+M+ GY   
Sbjct: 142 PASARRLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAE 201

Query: 91  SNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVV 150
            +   A + +  M R+                                       DV   
Sbjct: 202 GDLAGARNLFDGMARR---------------------------------------DVVTW 222

Query: 151 NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAI 210
           N +I  YS+ G M  AR +F+    +D+VSWN +L G+ + G++  AR VFD MP++  +
Sbjct: 223 NSMISGYSRHGDMENARKMFDAMPERDVVSWNSMLDGYAQAGDVEMARLVFDGMPKRSIV 282

Query: 211 SWSIMIDGYRKKK-----------------------------------GDISSARILFEH 235
           SW++++  Y K +                                   GD+   R     
Sbjct: 283 SWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACANLGDLEKGRW---- 338

Query: 236 MPIKDLIS--WNSMIDG----------YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
             + DL+   W+ ++            YAK G +  A+++FN M E++V SW+ MI GY 
Sbjct: 339 --VHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFNSMGEKSVPSWNSMIIGYG 396

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
            HG  ++AL LF EM   G RP+  + +  +S+CA  G +  G W    M R
Sbjct: 397 LHGQSEKALELFLEMERDGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVR 448



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 148/285 (51%), Gaps = 16/285 (5%)

Query: 227 SSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
           +SAR L   +P  D ++WN+++    ++G L AA++LF+EMPER+V S++ M+ GY   G
Sbjct: 143 ASARRLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAEG 202

Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
           +   A  LF  M     R DV++    IS  ++ G ++  + +   M       D++   
Sbjct: 203 DLAGARNLFDGM----ARRDVVTWNSMISGYSRHGDMENARKMFDAMPER----DVVSWN 254

Query: 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG--I 404
           +++D Y + G ++ AR +F  M K++++S+NV++A         E L  F  M  EG  +
Sbjct: 255 SMLDGYAQAGDVEMARLVFDGMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTV 314

Query: 405 PKDDLIFLGVLIACSHSGLATEGYRIFQSMK-RHCGIEPKLEHYSCLVDLLSRAGELEQA 463
           P +   F+ VL AC++ G   +G  +   ++ R   + P +   + L+ + ++ G +E A
Sbjct: 315 PNEK-TFVSVLTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETA 373

Query: 464 LNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508
             I  SM  K ++  W ++++    H     +E  +E  +E++ D
Sbjct: 374 REIFNSMGEK-SVPSWNSMIIGYGLHGQ---SEKALELFLEMERD 414



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 18/107 (16%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           M+ A  +FN + + +    N+MI GY      +KAL  ++ M+R G   +  T+  VL +
Sbjct: 370 METAREIFNSMGEKSVPSWNSMIIGYGLHGQSEKALELFLEMERDGPRPNETTFICVLSS 429

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYS---KCGHMGC 165
           C            HG +V  G+ C     + ++  YS   K  H GC
Sbjct: 430 CA-----------HGGLVLEGWWC----FDRMVRFYSIEPKSEHFGC 461


>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 542

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 190/565 (33%), Positives = 303/565 (53%), Gaps = 69/565 (12%)

Query: 1   MKTLAAAKFSLKNPLVSLLQISKTTTHIL-QILAQLTTNDLITEPFTLSQLL-MSLTSPN 58
           +  + ++ F   N  + L+    +T   L QI A L    LI++    S++L     SP+
Sbjct: 13  VPAIPSSGFVSGNTCLRLIDTRCSTMRELKQIHANLIKTGLISDTVAASRVLAFCCASPS 72

Query: 59  TLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM--KRKGLLVDNYTYP 116
             N   A  +F +I   N ++ NT+IRG+++SS P+ A+S +++M      +     TYP
Sbjct: 73  DRNY--AYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYP 130

Query: 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK 176
            V KA   L    +G ++HG V+K G   D F+ N ++ MY                   
Sbjct: 131 SVFKAYASLGLARDGRQLHGRVIKEGLEDDSFIRNTMLHMY------------------- 171

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
                       V CG                      +++ +R           LF  M
Sbjct: 172 ------------VTCG---------------------CLVEAWR-----------LFVGM 187

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
              D+++WNS+I G AK G +  AQ+LF+EMP+RN  SW+ MI G+ ++G  K+AL +FR
Sbjct: 188 MGFDVVAWNSIIMGLAKCGLIDQAQKLFDEMPQRNGVSWNSMISGFVRNGRFKDALEMFR 247

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
           EM  + V+PD  +++  ++ACA +GA + G+WIH ++ R+R  ++ IV TALIDMY KCG
Sbjct: 248 EMQERDVKPDGFTMVSLLNACAYLGASEQGRWIHKYIVRNRFELNSIVITALIDMYCKCG 307

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
             +E  ++F     K +  +N MI GL  NG  E A+  F ++E  G+  D + F+GVL 
Sbjct: 308 CFEEGLKVFECAPTKQLSCWNSMILGLANNGCEERAMDLFLELERTGLEPDSVSFIGVLT 367

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
           AC+HSG   +    F+ M+    IEP ++HY+C+V++L  AG L++A  +++ MP++ + 
Sbjct: 368 ACAHSGEVHKAGEFFRLMREKYMIEPSIKHYTCMVNVLGGAGLLDEAEALIKKMPVEGDT 427

Query: 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
            +W +LL ACR + NV +A+     L  L  D+   YVL+SN YA  G++E A+  R +M
Sbjct: 428 IIWSSLLAACRKNGNVEMAKRAANCLKNLDPDETCGYVLMSNAYASYGLFEEAVEQRLLM 487

Query: 537 RKRKIKKETGRSVIEIDGNIKEFVS 561
           ++R+++KE G S IE+D  + EFVS
Sbjct: 488 KERQMEKEVGCSSIEVDFEVHEFVS 512


>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 176/454 (38%), Positives = 261/454 (57%), Gaps = 26/454 (5%)

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           +IH +V+K     + FV   LI  +S C  M  A +VF   +  D++ +N ++R  V   
Sbjct: 35  QIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNS 94

Query: 193 EMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMPIK------DLI 242
           E   A  VF EM       D  ++  ++   +   G +    +   H  ++      D+ 
Sbjct: 95  EPLLAFSVFFEMQDSGVCADNFTYPFLL---KACSGKVWVRVVEMIHAQVEKMGFCLDIF 151

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ- 301
             NS+ID Y K+G+L  A++LF+EMPER+  SW+ ++DGY + G    A  LF +M  + 
Sbjct: 152 VPNSLIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARN 211

Query: 302 ---------GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
                    G++ D  +V+  +SACA  G L LGK +H  ++R+R      V  ALIDMY
Sbjct: 212 VVSWSTMEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMY 271

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCGSL+ A  IF+ M +K+V+S+N +I GL M+G GE+AL+ F++M+ EG   D + F+
Sbjct: 272 AKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFV 331

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
           GVL AC+H+G   EG   F +M+R  G+ P++EHY C+VDLL R G L++A  +V SMP+
Sbjct: 332 GVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPL 391

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           +PN  +WGTLL ACR H    LAE V + LV+ +  D G   +LSNIYA AG W++   I
Sbjct: 392 EPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFANI 451

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFD 566
           R  M+   I+K +G S IE+D  + EF    +FD
Sbjct: 452 RLRMKSTSIQKPSGGSSIEVDDEVHEFT---VFD 482



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 134/410 (32%), Positives = 212/410 (51%), Gaps = 30/410 (7%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
           +S L    +   + QI AQ+   +L  E F   +L+ + +    + +  A  +FNQI  P
Sbjct: 21  ISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTL--AVNVFNQIQDP 78

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG--VLMGLVEGTE 133
           +  ++NT+IR + ++S P  A S +  M+  G+  DN+TYPF+LKAC   V + +VE   
Sbjct: 79  DVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVE--M 136

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           IH +V KMGF  D+FV N LI  Y K G +G AR +F+    +D VSWN +L G+V+ GE
Sbjct: 137 IHAQVEKMGFCLDIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKAGE 196

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS------------------ARILFEH 235
           M  A E+F++MP ++ +SWS M  G +   G + S                  A I    
Sbjct: 197 MNAAFELFEKMPARNVVSWSTMEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTR 256

Query: 236 MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
                 +S N++ID YAK G L  A  +F+ M  ++V SW+ +I G A HG+ ++AL LF
Sbjct: 257 FKCSTPVS-NALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLF 315

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMK 354
             M  +G  PD ++ +G + AC   G +D G  + H   +   +  ++     ++D+  +
Sbjct: 316 SRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGR 375

Query: 355 CGSLDEARRIFYSMT-KKNVISYNVMIAGLGMN---GFGEEALKCFAQME 400
            G L EA R+ +SM  + N I +  ++    M+   G  EE      + E
Sbjct: 376 GGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSE 425


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 192/571 (33%), Positives = 310/571 (54%), Gaps = 22/571 (3%)

Query: 25  TTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMI 84
           T H L + A    +  +     L++L   L+       D A ++F+ +  P+T + NT++
Sbjct: 135 TLHGLSVAAGYAADTFVAS--ALAKLYFKLS-----RGDDARKVFDTVPSPDTILWNTLL 187

Query: 85  RGYTQSSNPQKALSFYVNMKRKGLL-VDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGF 143
            G   S    +AL  +V M   G +  D+ T    L+A      +  G  +HG  VK G 
Sbjct: 188 AGLPGS----EALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGL 243

Query: 144 LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDE 203
                VV GL+ +YSKCG M  A+ +F+  +  DLV++N ++ G+   G +  + E+F E
Sbjct: 244 AEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKE 303

Query: 204 MP----QKDAISWSIMIDGYRKKKGDISS----ARILFEHMPIKDLISWNSMIDGYAKIG 255
           +     + ++ +   +I  Y     ++ +    A ++   +    L+S  ++   Y ++ 
Sbjct: 304 LTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVS-TALTTLYCRLN 362

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
           D+ +A+ +F+ M E+ + SW+ MI GYAQ+G  + A+ LF+ M    V+P+ I++   +S
Sbjct: 363 DMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLS 422

Query: 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS 375
           ACA +GAL LGKW+H  + + ++ +++ V TALIDMY KCGS+ EAR IF  M  KNV+S
Sbjct: 423 ACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVS 482

Query: 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMK 435
           +N MI+G G++G G EALK +  M    I      FL V+ ACSH GL  EG ++F+ M 
Sbjct: 483 WNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMT 542

Query: 436 RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP-NLALWGTLLLACRNHQNVTL 494
               I P +EH +C+VDLL RAG+L +AL ++   P       +WG LL AC  H+N  L
Sbjct: 543 NEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDL 602

Query: 495 AEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDG 554
           A++  + L EL +++ G YVLLSN+Y     +  A  +R+  + RK+ K  G ++IEI  
Sbjct: 603 AKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGD 662

Query: 555 NIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
               F++G+    QSE +   ++      IE
Sbjct: 663 RPHVFMAGDHLHPQSEAIYSYLERLTAKMIE 693


>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 187/565 (33%), Positives = 296/565 (52%), Gaps = 63/565 (11%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKG-----LLVDNYT---- 114
           +A++LF+++   N    N+++ GYT++   Q  L F+  M  +      L+VD Y     
Sbjct: 158 EAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGD 217

Query: 115 ------------YPFVLKACGVLMG------LVEGTEIHGEVVKMGFLCDVFVVNGLIGM 156
                        P V+    +L G      + E   +  E+     +      N +IG 
Sbjct: 218 LDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVS----WNAMIGA 273

Query: 157 YSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK--------- 207
           Y +   +  A  +F     KD VSW  ++ G+V  G++ +ARE+ + MP K         
Sbjct: 274 YVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMI 333

Query: 208 ----------------------DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWN 245
                                 D++ W+ MI GY    G    A  LF+ M  KD++SWN
Sbjct: 334 NGYLQSGRMDEANEIFSQISVRDSVCWNSMITGY-AHCGRTDEALRLFQEMVCKDMVSWN 392

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           +MI  YA+ G +  A ++FNEM ERNV SW+ +I GY Q+G   EAL  F  M  QG +P
Sbjct: 393 TMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKP 452

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D  +++  + A A + AL++G  +H    ++    D+ V+ A++ MY K G + EA  +F
Sbjct: 453 DQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVF 512

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
             +  K+V+S+N +IAG  +NG G+EA++ F  M   GI  D++ F G+L AC+H G   
Sbjct: 513 AEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVD 572

Query: 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
           +G  +F+SM     I+P+ EHY+C+++LL R G LE+A+ IV+ M    +  +WG LL A
Sbjct: 573 QGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWA 632

Query: 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
           CR H N+ LA+   E L+ L+  +   YVLLSN++A+AG W+   R+R +M++ K +K+ 
Sbjct: 633 CRIHHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMKENKAEKQP 692

Query: 546 GRSVIEIDGNIKEFVSGEIFDVQSE 570
           G S IEID  +  F+S    D++ E
Sbjct: 693 GCSWIEIDNQLHCFLSKAPPDLRPE 717



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 204/426 (47%), Gaps = 33/426 (7%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            A  LF+ + Q N    N+MI GY  +   + A   +  M ++    D Y++  ++    
Sbjct: 64  NARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKR----DIYSWTLMITCYT 119

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            +  L +  E+   +       D    N LI  Y+K      A+ +F+   +K++VSWN 
Sbjct: 120 RIGELEKARELFNLLPDKQ---DTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNS 176

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243
           +L G+ + G+M    + F+ M +++ +SW++M+DGY    GD+ SA + F+ +P  +++S
Sbjct: 177 ILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGY-VGVGDLDSAWMFFKKIPTPNVVS 235

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
           W +M+ G+A  G +  A+ LFNEMP +N+ SW+ MI  Y +     +A  LF EM     
Sbjct: 236 WVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEM----P 291

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
             D +S    I+   +VG L   + I   M    I      QTA+I+ Y++ G +DEA  
Sbjct: 292 EKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIA----AQTAMINGYLQSGRMDEANE 347

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           IF  ++ ++ + +N MI G    G  +EAL+ F +M    + KD + +  ++ A + +G 
Sbjct: 348 IFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEM----VCKDMVSWNTMIAAYAQAGQ 403

Query: 424 ATEGYRIFQSMKRHCGIEPK------------LEHYSCLVDLLSRAGELEQALNIVESMP 471
             +   +F  M+    +                E  +C + L+ + GE      IV  + 
Sbjct: 404 MDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFI-LMKQQGEKPDQTTIVCCLR 462

Query: 472 MKPNLA 477
              NLA
Sbjct: 463 ASANLA 468



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 103/426 (24%), Positives = 187/426 (43%), Gaps = 103/426 (24%)

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
           VF  N  I    + G +  A +VF     +++V++N ++  + + G +  ARE+FD MPQ
Sbjct: 15  VFTQNLRISQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMPQ 74

Query: 207 KDAISWSIMIDGYRKKK------------------------------GDISSARILFEHM 236
           ++ +SW+ MI GY   +                              G++  AR LF  +
Sbjct: 75  RNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLL 134

Query: 237 P--------------------------------IKDLISWNSMIDGYAKIGDLVAAQQLF 264
           P                                +K+++SWNS++ GY K G +    Q F
Sbjct: 135 PDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFF 194

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL- 323
             M ERNV SW++M+DGY   G+   A   F+++      P+V+S +  +S  A  G + 
Sbjct: 195 EAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPT----PNVVSWVTMLSGFAHYGRMT 250

Query: 324 ------------DLGKW---IHVFMKRSRIT-----------MDMIVQTALIDMYMKCGS 357
                       +L  W   I  +++ ++I             D +  TA+I+ Y++ G 
Sbjct: 251 EARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGK 310

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
           L +AR I   M  KN+ +   MI G   +G  +EA + F+Q+      +D + +  ++  
Sbjct: 311 LLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISV----RDSVCWNSMITG 366

Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
            +H G   E  R+FQ M     +   +  ++ ++   ++AG++++AL +   M  + N+ 
Sbjct: 367 YAHCGRTDEALRLFQEM-----VCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQER-NVV 420

Query: 478 LWGTLL 483
            W +L+
Sbjct: 421 SWNSLI 426


>gi|125605648|gb|EAZ44684.1| hypothetical protein OsJ_29310 [Oryza sativa Japonica Group]
          Length = 612

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 159/408 (38%), Positives = 266/408 (65%), Gaps = 4/408 (0%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D    N L+    + G +  AR +F+    +D+VS+N ++ G+V  G++  AR +FD M 
Sbjct: 156 DAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAEGDLAGARNLFDGMA 215

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
           ++D ++W+ MI GY  + GD+ +AR +F+ MP +D++SWNSM+DGYA+ GD+  A+ +F+
Sbjct: 216 RRDVVTWNSMISGY-SRHGDMENARKMFDAMPERDVVSWNSMLDGYAQAGDVEMARLVFD 274

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALD 324
            MP+R++ SW++++  YA+  + +E L LF  M+ +G   P+  + +  ++ACA +G L+
Sbjct: 275 GMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACANLGDLE 334

Query: 325 LGKWIHVFMKR--SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
            G+W+H  ++    R+  D+++ T L+ MY KCG ++ AR IF SM +K+V S+N MI G
Sbjct: 335 KGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFNSMGEKSVPSWNSMIIG 394

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
            G++G  E+AL+ F +ME +G   ++  F+ VL +C+H GL  EG+  F  M R   IEP
Sbjct: 395 YGLHGQSEKALELFLEMERDGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRFYSIEP 454

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
           K EH+ C++DLL RAG LEQ+ N++E++  K + ALWG L+ A +   N+ L E V + L
Sbjct: 455 KSEHFGCMMDLLGRAGLLEQSENLIENLQGKVSEALWGILMSASQTQNNIKLGEFVGKKL 514

Query: 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           +E++  + G Y+LLSNIYA  G W+   ++RK+M ++ ++K+ G S++
Sbjct: 515 IEMRPTEVGPYILLSNIYAAEGRWDDVEKVRKVMEEKGVEKDAGLSLV 562



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 144/352 (40%), Gaps = 105/352 (29%)

Query: 44  PFTLSQLLMSLTSPNTLN-------------MDQAERLFNQIYQPNTYMHNTMIRGYTQS 90
           P +  +LL  +  P+ +              +  A RLF+++ + +   +N+M+ GY   
Sbjct: 142 PASARRLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAE 201

Query: 91  SNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVV 150
            +   A + +  M R+                                       DV   
Sbjct: 202 GDLAGARNLFDGMARR---------------------------------------DVVTW 222

Query: 151 NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAI 210
           N +I  YS+ G M  AR +F+    +D+VSWN +L G+ + G++  AR VFD MP++  +
Sbjct: 223 NSMISGYSRHGDMENARKMFDAMPERDVVSWNSMLDGYAQAGDVEMARLVFDGMPKRSIV 282

Query: 211 SWSIMIDGYRKKK-----------------------------------GDISSARILFEH 235
           SW++++  Y K +                                   GD+   R     
Sbjct: 283 SWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACANLGDLEKGRW---- 338

Query: 236 MPIKDLIS--WNSMIDG----------YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
             + DL+   W+ ++            YAK G +  A+++FN M E++V SW+ MI GY 
Sbjct: 339 --VHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFNSMGEKSVPSWNSMIIGYG 396

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
            HG  ++AL LF EM   G RP+  + +  +S+CA  G +  G W    M R
Sbjct: 397 LHGQSEKALELFLEMERDGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVR 448



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 148/285 (51%), Gaps = 16/285 (5%)

Query: 227 SSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
           +SAR L   +P  D ++WN+++    ++G L AA++LF+EMPER+V S++ M+ GY   G
Sbjct: 143 ASARRLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAEG 202

Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
           +   A  LF  M     R DV++    IS  ++ G ++  + +   M       D++   
Sbjct: 203 DLAGARNLFDGM----ARRDVVTWNSMISGYSRHGDMENARKMFDAMPER----DVVSWN 254

Query: 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG--I 404
           +++D Y + G ++ AR +F  M K++++S+NV++A         E L  F  M  EG  +
Sbjct: 255 SMLDGYAQAGDVEMARLVFDGMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTV 314

Query: 405 PKDDLIFLGVLIACSHSGLATEGYRIFQSMK-RHCGIEPKLEHYSCLVDLLSRAGELEQA 463
           P +   F+ VL AC++ G   +G  +   ++ R   + P +   + L+ + ++ G +E A
Sbjct: 315 PNEK-TFVSVLTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETA 373

Query: 464 LNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508
             I  SM  K ++  W ++++    H     +E  +E  +E++ D
Sbjct: 374 REIFNSMGEK-SVPSWNSMIIGYGLHGQ---SEKALELFLEMERD 414



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 18/107 (16%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           M+ A  +FN + + +    N+MI GY      +KAL  ++ M+R G   +  T+  VL +
Sbjct: 370 METAREIFNSMGEKSVPSWNSMIIGYGLHGQSEKALELFLEMERDGPRPNETTFICVLSS 429

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYS---KCGHMGC 165
           C            HG +V  G+ C     + ++  YS   K  H GC
Sbjct: 430 CA-----------HGGLVLEGWWC----FDRMVRFYSIEPKSEHFGC 461


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 171/525 (32%), Positives = 286/525 (54%), Gaps = 41/525 (7%)

Query: 39  DLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALS 98
           D  ++  +L++ + S       +++ A  +F ++    T   NTM+ GYT+ +       
Sbjct: 68  DTASDVVSLNKTIASFV--RACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAG------ 119

Query: 99  FYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYS 158
               +K    L D    P                             D    N ++  Y 
Sbjct: 120 ---KVKEAHELFDKIPEP-----------------------------DSVSYNIMLVCYL 147

Query: 159 KCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDG 218
           +   +  A + F    +KD+ SWN ++ GF + G+M KA ++F  MP+K+ +SWS MI G
Sbjct: 148 RSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISG 207

Query: 219 YRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM 278
           Y  + GD+ +A  L++++ +K ++   +M+ GY K G +  A+++F  M  +N+ +W+ M
Sbjct: 208 Y-VEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSM 266

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338
           I GY ++   ++ L +F+ M+   VRP+ +S+   +  C+ + AL LG+ +H  + +S +
Sbjct: 267 IAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPL 326

Query: 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
           + D    T+LI MY KCG LD A ++F  M +K+VIS+N MI+G   +G G +AL  F +
Sbjct: 327 SKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDK 386

Query: 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458
           M    +  D + F+ V++AC+H+G    G + F+SMK+  GIE K  HY+C++DLL RAG
Sbjct: 387 MRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAG 446

Query: 459 ELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSN 518
            L++A+++++ MP KP+ A++GTLL ACR H+N+ LAE     L+ L       YV L+N
Sbjct: 447 RLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLAN 506

Query: 519 IYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           IYA    W+   ++RKMM++  + K  G S IEI     EF S +
Sbjct: 507 IYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSD 551


>gi|224136906|ref|XP_002322445.1| predicted protein [Populus trichocarpa]
 gi|222869441|gb|EEF06572.1| predicted protein [Populus trichocarpa]
          Length = 531

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 200/587 (34%), Positives = 306/587 (52%), Gaps = 72/587 (12%)

Query: 4   LAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMD 63
           ++  K SLK  L+  +Q  K      +I AQL T+ +++               N L ++
Sbjct: 1   MSKIKHSLKWVLLDSIQRCKKLKIFKKIHAQLITSGVVS---------------NDLVVN 45

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           +A   F +   PN                   A  F   M+  G L   +T+P VLK+C 
Sbjct: 46  RAAEFFAK--GPNF---------------ADYACDFLSQME-DGFLPYMFTFPAVLKSCA 87

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
             M + EG ++HG + KM F+CD++V N L+  YS CG                      
Sbjct: 88  KFMAVDEGRQVHGVIAKMDFVCDIYVENSLVHFYSVCG---------------------- 125

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR----ILFEHMPIK 239
                     +  A  VFDEM  +DA+SW+ +I  Y   KG +   +    ++ E     
Sbjct: 126 ---------SLDDASRVFDEMLVRDAVSWTGVI--YPGIKGYLILGKGIHGLIIERGFGL 174

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
            L   N+++D Y K   L   +Q+F+E+PE+++ SW+ +I G  Q   PKE L LF ++ 
Sbjct: 175 GLEVSNALMDMYVKCESLPEEKQVFDELPEKDIVSWTSIICGMVQCKFPKEVLELFCDVQ 234

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
             G+ PD I +   +SA A  GALD G+ +  ++    I  D+ + TA++DMY KCG ++
Sbjct: 235 SSGIEPDGIILTSVLSARASPGALDYGRLVREYIDHKAIKWDIQIGTAVVDMYAKCGCIE 294

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
            A +IF  M  KNV+++N M+ GL M+G G++AL+ F +M  EG+  +++ FL  L AC 
Sbjct: 295 MAMQIFNVMPHKNVLTWNAMLNGLAMHGHGQKALQLFEEMVREGMRPNEVTFLVTLTACC 354

Query: 420 HSGLATEGYRIFQSMK-RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
           H G   EG R F  MK +   + P+LEHY C+VDLL RAG L++AL + ++MPM P++ +
Sbjct: 355 HCGFVGEGRRYFHWMKSQQYNLPPRLEHYGCMVDLLCRAGLLDEALELTKAMPMLPDVRI 414

Query: 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
            G LL  C+ + NV L   +++ LVE  + D G+YVLLSNI A    W    RIR++M K
Sbjct: 415 MGALLSTCKANGNVELPREILDRLVEFDSRDSGVYVLLSNILAINQRWADVTRIRRLM-K 473

Query: 539 RKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
             I+K  G SVIE+DG   E + G++   Q + + L ++S   T I+
Sbjct: 474 MGIEKTPGSSVIEVDGKAHEIIVGDLRYPQDKHIRLFLKSLSDTQIK 520


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 190/634 (29%), Positives = 307/634 (48%), Gaps = 82/634 (12%)

Query: 7   AKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAE 66
           A     +PL  LL+ +   +      A++  + +  E F L+ L+ +      L    A 
Sbjct: 15  AHLRASSPLADLLRSAPNLSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLR--DAR 72

Query: 67  RLFNQIYQPNTYMHNTMIRGYTQSSNPQKA------------------------------ 96
           R+F++I   NT+ +N ++  Y +   P +A                              
Sbjct: 73  RVFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHA 132

Query: 97  ---LSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGL 153
              L F   M     +++ Y++   L AC        G ++HG V +     DV + + L
Sbjct: 133 ADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSAL 192

Query: 154 IGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM------P-- 205
           + MY+KC     AR VF+    +++VSWN ++  + + G +G+A  +F EM      P  
Sbjct: 193 VDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDE 252

Query: 206 --------------------------------QKDAISWSIMIDGYRKKKGDISSARILF 233
                                           + D +  + ++D Y  K G    AR +F
Sbjct: 253 VTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMY-AKCGRTWEARCIF 311

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
           + MP + ++S  S++ GYAK  ++  AQ +F++M E+NV +W+++I  YAQ+G  +EA+ 
Sbjct: 312 DSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIR 371

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD------MIVQTA 347
           LF ++    + P   +    ++AC  +  L LG+  HV + +     D      + V  +
Sbjct: 372 LFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNS 431

Query: 348 LIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407
           L+DMY+K GS+D+  ++F  M  ++ +S+N MI G   NG  ++AL  F +M       D
Sbjct: 432 LVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPD 491

Query: 408 DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467
            +  +GVL AC HSGL  EG R F SM    GI P  +HY+C+VDLL RAG L++A  ++
Sbjct: 492 SVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELI 551

Query: 468 ESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWE 527
             MPM+P+  LW +LL ACR H+NV L E     L EL   + G YVLLSN+YA+ G W 
Sbjct: 552 NDMPMEPDSVLWASLLGACRLHKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWA 611

Query: 528 HALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
              R+R+ M+ R + K+ G S IEI   +  F++
Sbjct: 612 EVFRVRRSMKDRGVSKQPGCSWIEIGRKMNVFLA 645


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 176/513 (34%), Positives = 293/513 (57%), Gaps = 13/513 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A+ +F+++++ +    N+MI G++        ++  +   +  +  ++ T   VL A
Sbjct: 170 LDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPA 229

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI-KDLVS 180
              +  L  G EIHG  V+ GF+ DV V  G++ +Y KC  +  AR +F+   I K+ V+
Sbjct: 230 VAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVT 289

Query: 181 WNLVLRGFVECGEMGKAREVF-------DEMPQKDAISWSIMIDGYRKKKGDISSARILF 233
           W+ ++  +V C  M +A E+F       D++    A++ + +I        D+S+   L 
Sbjct: 290 WSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIR-VCANLTDLSTGTCLH 348

Query: 234 EHMP----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
            +      + DL+  N+++  YAK G +  A + FNEM  R+  S++ +I GY Q+GN +
Sbjct: 349 CYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSE 408

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           E L +F EM   G+ P+  ++   + ACA +  L  G   H +      T D ++  ALI
Sbjct: 409 EGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALI 468

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           DMY KCG +D AR++F  M K+ ++S+N MI   G++G G EAL  F  M++EG+  DD+
Sbjct: 469 DMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDV 528

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            F+ ++ ACSHSGL  EG   F +M +  GI P++EHY+C+VDLLSRAG  ++  + +E 
Sbjct: 529 TFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEK 588

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           MP++P++ +WG LL ACR ++NV L E V + + +L  +  G +VLLSN+Y+  G W+ A
Sbjct: 589 MPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDA 648

Query: 530 LRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
            ++R   +++  +K  G S IEI G +  F+ G
Sbjct: 649 AQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGG 681



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 141/542 (26%), Positives = 254/542 (46%), Gaps = 40/542 (7%)

Query: 17  SLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI-YQP 75
           SL +      H+L+ L +    +L        +L+    + + L +  A  +F+++ ++P
Sbjct: 24  SLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKI--ARHVFDKMPHRP 81

Query: 76  -NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
            N  + N +IR Y  +   ++A+  Y  M   G+  + +T+PFVLKAC  L    EG EI
Sbjct: 82  KNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGREI 141

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF-VECGE 193
           H ++ ++    +V+V   L+  Y+KCG +  A+ VF+    +D+V+WN ++ GF +  G 
Sbjct: 142 HCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGS 201

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR-------ILFEHMPIKDLISWNS 246
             +   +  +M Q D    S  I G       ++S R              + D++    
Sbjct: 202 YDEVARLLVQM-QNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTG 260

Query: 247 MIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           ++D Y K   +  A+++F+ M   +N  +WS M+  Y      +EAL LF ++L   ++ 
Sbjct: 261 ILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLM--LKD 318

Query: 306 DVI-----SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
           DVI     ++   I  CA +  L  G  +H +  +S   +D++V   L+ MY KCG ++ 
Sbjct: 319 DVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIING 378

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS- 419
           A R F  M  ++ +S+  +I+G   NG  EE L+ F +M+  GI  +      VL AC+ 
Sbjct: 379 AMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAH 438

Query: 420 ----HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
               H G  +  Y I       CG        + L+D+ ++ G+++ A  + + M  K  
Sbjct: 439 LAGLHYGSCSHCYAII------CGFTADTMICNALIDMYAKCGKIDTARKVFDRMH-KRG 491

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLL-----SNIYADAGMWEH 528
           +  W T+++A   H     A ++ + +    LK DD     L+     S + A+   W +
Sbjct: 492 IVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFN 551

Query: 529 AL 530
           A+
Sbjct: 552 AM 553


>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
          Length = 620

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 179/563 (31%), Positives = 304/563 (53%), Gaps = 48/563 (8%)

Query: 57  PNTLNMD--------QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGL 108
           PN L +D         A +LF+   + +      ++  Y +    + A S +    R   
Sbjct: 43  PNRLIVDLAAAGRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLF---DRSDA 99

Query: 109 LVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARS 168
             +  T+  +L       GLV+  E+  + +      +V   N ++  Y+  G  G A +
Sbjct: 100 RRNVVTWTALLSGYA-RAGLVDEAEVLFQRMPQR---NVVSWNTMLEAYAVAGRAGDACA 155

Query: 169 VFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS 228
           +F+   ++D  SWN++L   V  G + KARE+F  MP++D ++W+ M+DG   + G++  
Sbjct: 156 LFDRMPVRDAGSWNILLAMLVRSGSVDKARELFGRMPERDVMAWTTMVDGV-ARSGNVDE 214

Query: 229 ARILFEHMPIKDLISWNSMIDGYAKI-------------------------------GDL 257
           AR+LF+ MP ++++SWN+MI GY +                                 DL
Sbjct: 215 ARLLFDSMPERNVVSWNAMISGYTRNHRLDEALDLFTKMPHRDIASCNIMITGFIQNKDL 274

Query: 258 VAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISAC 317
             A++LF+EMPERNV +W+ M++GY +    + +L LFR ML  G+RP+ ++ +GA+ AC
Sbjct: 275 KRARKLFDEMPERNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDAC 334

Query: 318 AQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYN 377
           + +  L  GK +H  + ++   +D  V +AL+++Y KCG +  AR++F    +K++IS+N
Sbjct: 335 SDLATLCEGKQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWN 394

Query: 378 VMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRH 437
            +IA    +G G EA+  + +M+  G   +D+ ++ +L ACSHSGL  EG +IF+SM   
Sbjct: 395 GIIAAYAHHGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVND 454

Query: 438 CGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP-NLALWGTLLLACRNHQNVTLAE 496
             I  + EHY+CL+DL SRAG L+ A  ++  + +KP + ++W  LL  C  H N ++  
Sbjct: 455 RSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGN 514

Query: 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNI 556
           +    L++ + D+ G Y LLSNIYA AG W+ A  IR  M  R +KK+ G S IE+   +
Sbjct: 515 LAARNLIQAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQPGCSWIEVANKV 574

Query: 557 KEFVSGEIFDVQSEELELVIQSF 579
             FV+ +    +S+ +  ++Q+ 
Sbjct: 575 HVFVARDKSHSESDLIYGLLQNI 597


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 175/488 (35%), Positives = 266/488 (54%), Gaps = 48/488 (9%)

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGM---YSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
           E  +IH  ++K G + D + +   +      +    +  A+ VF+G +  D   WNL++R
Sbjct: 29  ELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIR 88

Query: 187 GFVECGEMGKAR----------------------------EVFDEMPQ-----------K 207
           GF    E  ++                               F+E  Q            
Sbjct: 89  GFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYEN 148

Query: 208 DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
           D  + + +I+ Y    G+   A +LF+ +P  D +SWNS+I GY K G +  A  LF +M
Sbjct: 149 DVYAVNSLINSY-AVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKM 207

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK 327
            E+N  SW+ MI GY Q    KEAL LF EM    V PD +S+  A+SACAQ+GAL+ GK
Sbjct: 208 AEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGK 267

Query: 328 WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
           WIH ++ ++RI MD ++   LIDMY KCG ++EA  +F ++ KK+V ++  +I+G   +G
Sbjct: 268 WIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHG 327

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
            G EA+  F +M+  GI  + + F  VL ACS++GL  EG  IF SM+R   ++P +EHY
Sbjct: 328 HGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHY 387

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
            C+VDLL RAG L++A   ++ MP+KPN  +WG LL ACR H+N+ L E + E L+ +  
Sbjct: 388 GCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDP 447

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSG----- 562
              G YV  +NI+A    W+ A   R++M+++ + K  G S I ++G   EF++G     
Sbjct: 448 YHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHP 507

Query: 563 EIFDVQSE 570
           EI  +QS+
Sbjct: 508 EIEKIQSK 515



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 126/434 (29%), Positives = 218/434 (50%), Gaps = 49/434 (11%)

Query: 6   AAKFSLKNPL---VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLN 61
           +  FSL++ L   +S LQ       + QI A++    L+ + + +++ L   ++S ++  
Sbjct: 5   SCSFSLEHNLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDF 64

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +  A+ +F+   +P+T++ N MIRG++ S  P+++L  Y  M       + YT+P +LKA
Sbjct: 65  LPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKA 124

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L    E T+IH ++ K+G+  DV+ VN LI  Y+  G+   A  +F+     D VSW
Sbjct: 125 CSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSW 184

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
           N V++G+V+ G+M  A  +F +M +K+AISW+ MI GY +   +   A  LF  M   D+
Sbjct: 185 NSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMN-KEALQLFHEMQNSDV 243

Query: 242 ISWN---------------------------------------SMIDGYAKIGDLVAAQQ 262
              N                                        +ID YAK G++  A +
Sbjct: 244 EPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALE 303

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F  + +++V +W+ +I GYA HG+ +EA+  F EM   G++P+VI+    ++AC+  G 
Sbjct: 304 VFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGL 363

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTA-LIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMI 380
           ++ GK I   M+R       I     ++D+  + G LDEA+R    M  K N + +  ++
Sbjct: 364 VEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALL 423

Query: 381 AGLGMNG---FGEE 391
               ++     GEE
Sbjct: 424 KACRIHKNIELGEE 437


>gi|354805142|gb|AER41563.1| CRR4 [Oryza australiensis]
          Length = 599

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 184/542 (33%), Positives = 283/542 (52%), Gaps = 83/542 (15%)

Query: 76  NTYMHNTMI--------RGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           +T  HNT++        RG +    P  AL+ Y  M+ +G+  + +T+ F+L+AC  L+G
Sbjct: 65  STVSHNTLVERLAGARARGNSPEPAPADALAAYAAMRARGVPPNGFTFTFLLRACA-LLG 123

Query: 128 LVEGTE-IHGEVVKMGFLCDVFVVNGLIGMYSKC-------------------------- 160
           L      +HG++V+ GF  DVFV N L+ +Y +C                          
Sbjct: 124 LPRPCGCVHGQIVRCGFGGDVFVQNALMDVYYRCGGAGGVGAARQVFDQMVEKDVVSWNS 183

Query: 161 --------GHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISW 212
                   G    A  +FE    +++VSWN V+ GF   G+M  AR VFD MP ++A+SW
Sbjct: 184 IVGVYMSSGDATGAMGLFEAMPERNVVSWNTVVAGFARAGDMVTARTVFDRMPSRNAVSW 243

Query: 213 SIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
           ++MI GY    GD+ +A  +F+ M  KD++SW +M+  YAKIGDL  A+QLF+ MP +N+
Sbjct: 244 NLMISGY-ATSGDVEAAHSVFDRMDQKDVVSWTAMVSAYAKIGDLDNAKQLFDHMPVKNL 302

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHV 331
            SW+ MI GY  +    EAL  F+ M+ +G  RPD  +++  +SACAQ+G+++   WI  
Sbjct: 303 VSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWIGS 362

Query: 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391
           F+ +S+I + + +  ALIDM+ KCG +  A+  FY M  + +I++  MI+G   NGF  E
Sbjct: 363 FIGKSKIHLTVALGNALIDMFAKCGDVGRAQSFFYEMKTRCIITWTTMISGFAFNGFCRE 422

Query: 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
           AL  +  M  EGI  DD +F+  L AC+H GL  EG+ IF  M +   I+P++EHY C+V
Sbjct: 423 ALLVYNNMCREGIELDDTVFIAALAACAHGGLLQEGWSIFNEMVKQYNIQPRMEHYGCMV 482

Query: 452 DLLSRAGELEQALNIVESM-PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           DLL RA  +E   N +  + P  P+                                   
Sbjct: 483 DLLGRAELIEYVSNKITKLEPFNPSYQ--------------------------------- 509

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570
              VL+SN  A  G W+  +  R  MR   I+K  G S+I++   + EF++ +    + +
Sbjct: 510 ---VLVSNCSALEGRWDGVIGARTSMRNWGIEKVPGSSLIQVGSEVHEFLAKDTRHERKK 566

Query: 571 EL 572
           E+
Sbjct: 567 EI 568


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 179/479 (37%), Positives = 276/479 (57%), Gaps = 9/479 (1%)

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           M R G   + +T+PF +K+C  L   + G ++H  V K G L + FV   LI MY KC  
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 163 MGCARSVF-EGSEIKDL-VSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR 220
           +  AR +F E  + + L V +N +L G+     +     +F EM +       + + G  
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120

Query: 221 KKKGDISSARI--LFEHMPIK-----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
           +  G   +  +        +K     D    N ++  Y K G++   ++LF+EMP + + 
Sbjct: 121 QPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLI 180

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
           +W+ MI+GYAQ+G     L L++EM  +G  PD ++++G +S+CA +GAL +GK +   M
Sbjct: 181 TWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKM 240

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
           +    + +  +  AL++MY +CG+L +AR IF  M  K+V+S+  +I G GM+G GE A+
Sbjct: 241 EGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAV 300

Query: 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
             F +M   GI  D   F+ VL ACSH+GL  +G   F  M+R  G+ P  EHYSC+VDL
Sbjct: 301 GLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDL 360

Query: 454 LSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLY 513
           L RAG L +A  ++ESM ++ + ALWG LL AC+ H+NV LAE+  E ++EL+  + G Y
Sbjct: 361 LGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNTGYY 420

Query: 514 VLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           VLLSN+Y +AG  E  LR+R +MRKRK+KK+ G S +E  G +  F +G+    Q+ E+
Sbjct: 421 VLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTNEI 479



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 172/353 (48%), Gaps = 20/353 (5%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPN--TYMHNTMIRGY 87
           Q+   +     + EPF  + L+ S+    +L +D A +LF++  Q    T  +N+++ GY
Sbjct: 31  QLHCHVFKTGCLLEPFVQTSLI-SMYGKCSL-IDNARKLFDENPQSRKLTVCYNSLLSGY 88

Query: 88  TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV 147
             +S  +  +  +  M+  G+ ++  T   +++ CG+   L  G  +HG  VK G   D 
Sbjct: 89  ALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDS 148

Query: 148 FVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK 207
            V N L+ MY K G + C R +F+    K L++WN ++ G+ + G      E++ EM  K
Sbjct: 149 SVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESK 208

Query: 208 DAISWSIMIDGYRKKKGDISSARI-----------LFEHMPIKDLISWNSMIDGYAKIGD 256
                 + + G       + +  +            F   P  +    N++++ YA+ G+
Sbjct: 209 GFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLN----NALVNMYARCGN 264

Query: 257 LVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISA 316
           L  A+ +F+ MP ++V SW+ +I GY  HG  + A+ LF EM+  G++PD  + +  +SA
Sbjct: 265 LKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSA 324

Query: 317 CAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           C+  G  + G  +  V  ++  +       + ++D+  + G L+EAR +  SM
Sbjct: 325 CSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESM 377


>gi|357138593|ref|XP_003570875.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 664

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 168/503 (33%), Positives = 281/503 (55%), Gaps = 15/503 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALS-FYVNMKRKGLLVDNYTYPFVLK 120
           +++A  LF+ +   N     TMI GY +    ++A   F ++      + +     +V  
Sbjct: 152 VERARELFDMMPSRNDVSWLTMISGYIKKRRLREARELFDLSPSHPTSVCNALLSGYVAL 211

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           +C     L +  E+ G + +     D    N +I  Y++ G M  A+S+F+    KD +S
Sbjct: 212 SC-----LKDAEELFGRMQRR----DPVSWNVMITGYARAGRMQVAQSLFDEMPQKDTIS 262

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKD 240
           W  V+RG+++ G++  + +VF ++P +D ++W+ M+ G+ + +  +  A  LF  MP +D
Sbjct: 263 WTAVMRGYLQNGDVDASWKVFQDIPDRDVVAWNTMMGGFVQSE-RLDDALRLFAEMPERD 321

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
           L+SWN+++ G+ + GD+  A   F  MPE++  SW+ +I G+   G    AL L  EM+ 
Sbjct: 322 LVSWNTILQGHVQQGDMATANTWFRGMPEKDETSWNTLISGHKDEG----ALALLSEMIR 377

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
            G+RPD  ++   IS CA + AL  GK +H++  ++    D +V ++LI MY KCG + E
Sbjct: 378 GGLRPDEATLSVVISICASLVALGYGKMVHLYAVKTGFEHDALVMSSLISMYSKCGLIAE 437

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           A ++F  + +++ +++N MIA    +G   EALK F +M  +G   D   FL VL AC+H
Sbjct: 438 ASQVFKLLVQRDTVTWNAMIATYAYHGMASEALKLFNKMTKDGFRPDHATFLSVLSACAH 497

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
            G   EG R F+SM+    + P+ +HYSC+VDLL R G + QA +    +P    +  W 
Sbjct: 498 KGDLYEGCRYFRSMQEDWNLTPRSDHYSCMVDLLGRLGFIYQAYDFTRKIPSDLQINAWE 557

Query: 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540
           TL  AC  H +V L EV+ + +++ +  D G+Y LL+NIYA   MW  A  +R +M+++ 
Sbjct: 558 TLFSACNAHGDVQLGEVIAKDVLQARPSDGGMYTLLANIYASKEMWSSAASVRGVMKEQG 617

Query: 541 IKKETGRSVIEIDGNIKEFVSGE 563
           +KKETG S +E+ G +  F S +
Sbjct: 618 LKKETGCSWVELKGEVVSFSSND 640



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 143/271 (52%), Gaps = 14/271 (5%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           +VF  N +I        +  AR VF+   +++ VSW  +L G+  CG + +ARE+FD MP
Sbjct: 73  NVFTWNCMISGLVGNRMLADARRVFDAMPVRNPVSWAALLTGYARCGRVAEARELFDRMP 132

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
            ++ +SW+ M+ GY  + G +  AR LF+ MP ++ +SW +MI GY K   L  A++LF+
Sbjct: 133 DRNVVSWNAMMSGY-LRNGMVERARELFDMMPSRNDVSWLTMISGYIKKRRLREARELFD 191

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
             P       + ++ GY      K+A  LF  M     R D +S    I+  A+ G + +
Sbjct: 192 LSPSHPTSVCNALLSGYVALSCLKDAEELFGRM----QRRDPVSWNVMITGYARAGRMQV 247

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
            + +   M +     D I  TA++  Y++ G +D + ++F  +  ++V+++N M+ G   
Sbjct: 248 AQSLFDEMPQK----DTISWTAVMRGYLQNGDVDASWKVFQDIPDRDVVAWNTMMGGFVQ 303

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
           +   ++AL+ FA+M     P+ DL+    ++
Sbjct: 304 SERLDDALRLFAEM-----PERDLVSWNTIL 329



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 150/302 (49%), Gaps = 18/302 (5%)

Query: 152 GLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAIS 211
            L+  Y++CG +  AR +F+    +++VSWN ++ G++  G + +ARE+FD MP ++ +S
Sbjct: 110 ALLTGYARCGRVAEARELFDRMPDRNVVSWNAMMSGYLRNGMVERARELFDMMPSRNDVS 169

Query: 212 WSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271
           W  MI GY KK+  +  AR LF+  P       N+++ GY  +  L  A++LF  M  R+
Sbjct: 170 WLTMISGYIKKR-RLREARELFDLSPSHPTSVCNALLSGYVALSCLKDAEELFGRMQRRD 228

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV 331
             SW++MI GYA+ G  + A  LF EM     + D IS    +    Q G +D   W  V
Sbjct: 229 PVSWNVMITGYARAGRMQVAQSLFDEM----PQKDTISWTAVMRGYLQNGDVD-ASW-KV 282

Query: 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391
           F  +     D++    ++  +++   LD+A R+F  M +++++S+N ++ G    G    
Sbjct: 283 F--QDIPDRDVVAWNTMMGGFVQSERLDDALRLFAEMPERDLVSWNTILQGHVQQGDMAT 340

Query: 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
           A   F      G+P+ D      LI    SG   EG     S     G+ P     S ++
Sbjct: 341 ANTWF-----RGMPEKDETSWNTLI----SGHKDEGALALLSEMIRGGLRPDEATLSVVI 391

Query: 452 DL 453
            +
Sbjct: 392 SI 393



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 163/334 (48%), Gaps = 31/334 (9%)

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           D+  WN V+   +  G +  AR VFDEMP+++  +W+ MI G    +  ++ AR +F+ M
Sbjct: 42  DIFQWNAVITAHLRAGRVAAARRVFDEMPERNVFTWNCMISGLVGNRM-LADARRVFDAM 100

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
           P+++ +SW +++ GYA+ G +  A++LF+ MP+RNV SW+ M+ GY ++G  + A  LF 
Sbjct: 101 PVRNPVSWAALLTGYARCGRVAEARELFDRMPDRNVVSWNAMMSGYLRNGMVERARELFD 160

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM------IVQTALID 350
            M     R DV S +  IS   +   L          + +R   D+       V  AL+ 
Sbjct: 161 MMPS---RNDV-SWLTMISGYIKKRRL----------REARELFDLSPSHPTSVCNALLS 206

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
            Y+    L +A  +F  M +++ +S+NVMI G    G  + A   F +M      KD + 
Sbjct: 207 GYVALSCLKDAEELFGRMQRRDPVSWNVMITGYARAGRMQVAQSLFDEMPQ----KDTIS 262

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
           +  V+     +G     +++FQ +      +  +  ++ ++    ++  L+ AL +   M
Sbjct: 263 WTAVMRGYLQNGDVDASWKVFQDIP-----DRDVVAWNTMMGGFVQSERLDDALRLFAEM 317

Query: 471 PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE 504
           P + +L  W T+L       ++  A     G+ E
Sbjct: 318 PER-DLVSWNTILQGHVQQGDMATANTWFRGMPE 350


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 192/609 (31%), Positives = 308/609 (50%), Gaps = 99/609 (16%)

Query: 56  SPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALS-FYVNMKRKGLLVDNYT 114
           SPN   M      F+ I   + Y  N MI GY ++ N  + +  F + M   GL  D  T
Sbjct: 33  SPNKSKM----HTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRT 88

Query: 115 YPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174
           +P VLKAC  +   ++G +IH   +K GF+ DV+V   LI +YS+   +G AR +F+   
Sbjct: 89  FPSVLKACRTV---IDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMP 145

Query: 175 IKDLVSWNLVLRGFVECGEMGKA------------------------------------- 197
           ++D+ SWN ++ G+ + G   +A                                     
Sbjct: 146 VRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSY 205

Query: 198 --------------REVFDEMPQKDAISWSIMIDGYR----------------------- 220
                         ++VFD M  +D ISW+ +I  Y                        
Sbjct: 206 SIKHGLESELLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPD 265

Query: 221 -----------KKKGDISSAR-----ILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
                       + GDI + R      L +   ++D+   N+++  YAK+G + +A+ +F
Sbjct: 266 CLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVF 325

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGAL 323
           N +P  +V SW+ +I GYAQ+G   EA+ ++  M  +G +  +  + +  + AC+Q GAL
Sbjct: 326 NWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGAL 385

Query: 324 DLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383
             G  +H  + ++ + +D+ V T+L DMY KCG L++A  +FY + + N + +N +IA  
Sbjct: 386 RQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACH 445

Query: 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443
           G +G GE+A+  F +M  EG+  D + F+ +L ACSHSGL  EG   F+ M+   GI P 
Sbjct: 446 GFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPS 505

Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLV 503
           L+HY C+VD+  RAG+LE AL  ++SM ++P+ ++WG LL ACR H NV L ++  E L 
Sbjct: 506 LKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLF 565

Query: 504 ELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           E++ +  G +VLLSN+YA AG WE    IR +   + ++K  G S +E+D  ++ F +G 
Sbjct: 566 EVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGN 625

Query: 564 IFDVQSEEL 572
                 EE+
Sbjct: 626 QTHPMYEEM 634



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 9/215 (4%)

Query: 231 ILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
           ++F H     LI     +  +  +    +    F+ +  R+V++W++MI GY + GN  E
Sbjct: 9   MMFTHFSDIALICNQPNVSTHVSLSPNKSKMHTFDHIQNRDVYAWNLMISGYGRAGNSSE 68

Query: 291 ALYLFR-EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
            +  F   ML  G+ PD  +    + AC  V  +D G  IH    +     D+ V  +LI
Sbjct: 69  VIRCFSLFMLSSGLTPDYRTFPSVLKACRTV--ID-GNKIHCLALKFGFMWDVYVAASLI 125

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
            +Y +  ++  AR +F  M  +++ S+N MI+G   +G  +EAL     +       D +
Sbjct: 126 HLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRA----MDSV 181

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444
             + +L AC+ +G    G  I     +H G+E +L
Sbjct: 182 TVVSLLSACTEAGDFNRGVTIHSYSIKH-GLESEL 215


>gi|15230248|ref|NP_189142.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273633|sp|Q9LJR6.1|PP253_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial; Flags: Precursor
 gi|9293988|dbj|BAB01891.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643452|gb|AEE76973.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 601

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 173/552 (31%), Positives = 307/552 (55%), Gaps = 13/552 (2%)

Query: 18  LLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNT 77
           L  ISK   HI QI A + +   +    ++S+ L++ +      +  A ++F+++ Q   
Sbjct: 23  LQSISKLKRHITQIHAFVISTGNLLNGSSISRDLIA-SCGRIGEISYARKVFDELPQRGV 81

Query: 78  YMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV--EGTEIH 135
            ++N+MI  Y++  NP + L  Y  M  + +  D+ T+   +KAC  L GLV  +G  + 
Sbjct: 82  SVYNSMIVVYSRGKNPDEVLRLYDQMIAEKIQPDSSTFTMTIKAC--LSGLVLEKGEAVW 139

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
            + V  G+  DVFV + ++ +Y KCG M  A  +F     +D++ W  ++ GF + G+  
Sbjct: 140 CKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQAGKSL 199

Query: 196 KAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI-------LFEHMPIKDLISWNSMI 248
           KA E + EM  +      +++ G  +  GD+   ++       L+      +++   S++
Sbjct: 200 KAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMNVVVETSLV 259

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
           D YAK+G +  A ++F+ M  +   SW  +I G+AQ+G   +A     EM   G +PD++
Sbjct: 260 DMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQSLGFQPDLV 319

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           +++G + AC+QVG+L  G+ +H ++ + R  +D +  TAL+DMY KCG+L  +R IF  +
Sbjct: 320 TLVGVLVACSQVGSLKTGRLVHCYILK-RHVLDRVTATALMDMYSKCGALSSSREIFEHV 378

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
            +K+++ +N MI+  G++G G+E +  F +M    I  D   F  +L A SHSGL  +G 
Sbjct: 379 GRKDLVCWNTMISCYGIHGNGQEVVSLFLKMTESNIEPDHATFASLLSALSHSGLVEQGQ 438

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
             F  M     I+P  +HY CL+DLL+RAG +E+AL+++ S  +   L +W  LL  C N
Sbjct: 439 HWFSVMINKYKIQPSEKHYVCLIDLLARAGRVEEALDMINSEKLDNALPIWVALLSGCIN 498

Query: 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRS 548
           H+N+++ ++    +++L  D  G+  L+SN +A A  W+   ++RK+MR   ++K  G S
Sbjct: 499 HRNLSVGDIAANKILQLNPDSIGIQTLVSNFFATANKWKEVAKVRKLMRNGAMEKVPGYS 558

Query: 549 VIEIDGNIKEFV 560
            IE++G ++ F+
Sbjct: 559 AIEVNGELRTFL 570


>gi|297804224|ref|XP_002869996.1| putative protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315832|gb|EFH46255.1| putative protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1251

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 187/532 (35%), Positives = 290/532 (54%), Gaps = 30/532 (5%)

Query: 61   NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            ++D A ++F ++   +    N M+ G+ QS +  K  S +  M+   +  D+ T   +++
Sbjct: 698  SLDYAAKVFERMPVRDATTWNAMLSGFCQSGHTDKVFSLFREMRLDEIPPDSVTVMTLIQ 757

Query: 121  ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD--L 178
            +      L     +H   +++G      V N  I  Y KCG +  A+ VFE  +  D  +
Sbjct: 758  SASFEKSLKLLKVMHAFGIRLGVDLQATVSNTWISAYGKCGDLDSAKLVFEAIDRGDRTV 817

Query: 179  VSWNLVLRGFVECGEMGKA--------REVFDEMPQKDAISWSIMIDGYRKKKGDISSAR 230
            VSWN V + F   GE   A        R+ F     K  +S  I +    +    ++  R
Sbjct: 818  VSWNSVFKAFAVFGEAFDAFGHYRLMLRDEF-----KPDLSTFINLAASCQNPQTLTQGR 872

Query: 231  ILFEHM----PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
            ++  H       +D+ + N+ I  Y+K GD  +A+ LF+ MP R   SW++MI GYA+ G
Sbjct: 873  LIHSHAIHLGTDQDIEAINTFISMYSKSGDSCSARLLFDIMPSRTCVSWTVMISGYAEKG 932

Query: 287  NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM------ 340
            +  EAL LF  M   GV PD+++++  IS C + G+L++GKWI       R  M      
Sbjct: 933  DMDEALALFHAMAKTGVNPDLVTLLSLISGCGKFGSLEIGKWID-----GRADMYGCKKD 987

Query: 341  DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME 400
            +++V  ALIDMY KCGS+DEAR IF + ++K ++++  MIAG  +NG   EA++ F++M 
Sbjct: 988  NVMVCNALIDMYSKCGSIDEARDIFDNTSEKTMVTWTTMIAGYALNGIFLEAMELFSKMI 1047

Query: 401  TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460
                  + + FL VL AC+HSG   +G+  F  MK+   I P L+HYSC+VDLL R G+L
Sbjct: 1048 DLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKL 1107

Query: 461  EQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520
            ++AL ++ +M  KP+  +WG LL AC+ H+NV +AE   + L  L+      YV +SNIY
Sbjct: 1108 DEALELIHNMSAKPDAGIWGALLSACKIHRNVKIAEQAADSLFNLEPQMAAPYVEMSNIY 1167

Query: 521  ADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            A AGMW+   RIR MM+   IKK  G SVI+++G    F  GE   +++E +
Sbjct: 1168 AAAGMWDGFARIRSMMKLWNIKKYPGESVIQVNGKNHTFTVGERGHMENEAI 1219



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 193/424 (45%), Gaps = 34/424 (8%)

Query: 81   NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
            N  +R     ++P ++L  +  MKR G   +N+T+PFV KAC  L  +     +H  ++K
Sbjct: 617  NFQVREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLAYIGYCEMVHTHLIK 676

Query: 141  MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
              F  DVFV    + M+ KC  +  A  VFE   ++D  +WN +L GF + G   K   +
Sbjct: 677  SPFWSDVFVGTATVDMFVKCDSLDYAAKVFERMPVRDATTWNAMLSGFCQSGHTDKVFSL 736

Query: 201  F-----DEMPQKDAISWSIMIDGYRKKKG----DISSARILFEHMPIKDLISWNSMIDGY 251
            F     DE+P  D+++   +I     +K      +  A  +   + ++  +S N+ I  Y
Sbjct: 737  FREMRLDEIP-PDSVTVMTLIQSASFEKSLKLLKVMHAFGIRLGVDLQATVS-NTWISAY 794

Query: 252  AKIGDLVAAQQLFN--EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
             K GDL +A+ +F   +  +R V SW+ +   +A  G   +A   +R ML    +PD+ +
Sbjct: 795  GKCGDLDSAKLVFEAIDRGDRTVVSWNSVFKAFAVFGEAFDAFGHYRLMLRDEFKPDLST 854

Query: 310  VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369
             +   ++C     L  G+ IH          D+      I MY K G    AR +F  M 
Sbjct: 855  FINLAASCQNPQTLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSGDSCSARLLFDIMP 914

Query: 370  KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR 429
             +  +S+ VMI+G    G  +EAL  F  M   G+  D +  L ++  C           
Sbjct: 915  SRTCVSWTVMISGYAEKGDMDEALALFHAMAKTGVNPDLVTLLSLISGCGK--------- 965

Query: 430  IFQSMKRHCGIEPKLEHYSC----------LVDLLSRAGELEQALNIVESMPMKPNLALW 479
             F S++    I+ + + Y C          L+D+ S+ G +++A +I ++   K  +  W
Sbjct: 966  -FGSLEIGKWIDGRADMYGCKKDNVMVCNALIDMYSKCGSIDEARDIFDNTSEK-TMVTW 1023

Query: 480  GTLL 483
             T++
Sbjct: 1024 TTMI 1027



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 78/149 (52%)

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           +V +W+  +       +P E+L LFREM   G  P+  +      ACA++  +   + +H
Sbjct: 612 SVNAWNFQVREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLAYIGYCEMVH 671

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
             + +S    D+ V TA +DM++KC SLD A ++F  M  ++  ++N M++G   +G  +
Sbjct: 672 THLIKSPFWSDVFVGTATVDMFVKCDSLDYAAKVFERMPVRDATTWNAMLSGFCQSGHTD 731

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACS 419
           +    F +M  + IP D +  + ++ + S
Sbjct: 732 KVFSLFREMRLDEIPPDSVTVMTLIQSAS 760


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 177/524 (33%), Positives = 291/524 (55%), Gaps = 7/524 (1%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           +A ++F+++ + +    NT++ GY+Q+   + AL     M  + L     T   VL A  
Sbjct: 188 EARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVS 247

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            L  +  G EIHG  ++ GF   V +   L+ MY+KCG +  AR +F+G   +++VSWN 
Sbjct: 248 ALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNS 307

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK---KKGDISSARILF----EHM 236
           ++  +V+     +A  +F +M  +      + + G        GD+   R +     E  
Sbjct: 308 MIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELE 367

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
             +++   NS+I  Y K  ++  A  +F ++  R + SW+ MI G+AQ+G P EAL  F 
Sbjct: 368 LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFS 427

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
           +M  + V+PD  + +  I+A A++      KWIH  + R+ +  ++ V TAL+DMY KCG
Sbjct: 428 QMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCG 487

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
           ++  AR IF  M++++V ++N MI G G +G G+ AL+ F +M+   I  + + FL V+ 
Sbjct: 488 AIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVIS 547

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
           ACSHSGL   G + F  MK +  IEP ++HY  +VDLL RAG L +A + +  MP+KP +
Sbjct: 548 ACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAV 607

Query: 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
            ++G +L AC+ H+NV  AE V E L EL  +D G +VLL+NIY  A MWE   ++R  M
Sbjct: 608 NVYGAMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSM 667

Query: 537 RKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFV 580
            ++ ++K  G S++EI   +  F SG      S+++   ++  +
Sbjct: 668 LRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKLI 711



 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 150/479 (31%), Positives = 250/479 (52%), Gaps = 11/479 (2%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           ++P   LL+   +   +  IL  +  N L  E    ++L+       ++  D+A R+F  
Sbjct: 37  EHPAALLLERCSSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSV--DEAARVFEP 94

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           I +    ++ TM++G+ + S+  KAL F+V M+   +    Y + ++LK CG    L  G
Sbjct: 95  IDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVG 154

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            EIHG +VK GF  D+F + GL  MY+KC  +  AR VF+    +DLVSWN ++ G+ + 
Sbjct: 155 KEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQN 214

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFE------HMPIKDLIS-W 244
           G    A E+ + M +++     I I         +   RI  E            L++  
Sbjct: 215 GMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIA 274

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
            +++D YAK G L  A+ LF+ M ERNV SW+ MID Y Q+ NPKEA+ +F++ML +GV+
Sbjct: 275 TALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVK 334

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           P  +SVMGA+ ACA +G L+ G++IH       +  ++ V  +LI MY KC  +D A  +
Sbjct: 335 PTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASM 394

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F  +  + ++S+N MI G   NG   EAL  F+QM+   +  D   ++ V+ A +   + 
Sbjct: 395 FGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSIT 454

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
                I   + R+C ++  +   + LVD+ ++ G +  A  I + M  + ++  W  ++
Sbjct: 455 HHAKWIHGVVMRNC-LDKNVFVTTALVDMYAKCGAIMIARLIFDMMSER-HVTTWNAMI 511



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 115/480 (23%), Positives = 218/480 (45%), Gaps = 18/480 (3%)

Query: 104 KRKGLLVDNYTYP--FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCG 161
           +R  +  + Y +P   +L+ C     L E   I   + K G   +      L+ ++ + G
Sbjct: 27  QRNYIPANVYEHPAALLLERCS---SLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYG 83

Query: 162 HMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK 221
            +  A  VFE  + K  V +  +L+GF +  ++ KA + F  M   +            K
Sbjct: 84  SVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLK 143

Query: 222 KKGDISSARI-------LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
             GD +  R+       L +     DL +   + + YAK   +  A+++F+ MPER++ S
Sbjct: 144 VCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVS 203

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W+ ++ GY+Q+G  + AL +   M  + ++P  I+++  + A + +  + +GK IH +  
Sbjct: 204 WNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAM 263

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
           R+     + + TAL+DMY KCGSL  AR +F  M ++NV+S+N MI     N   +EA+ 
Sbjct: 264 RAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMV 323

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
            F +M  EG+   D+  +G L AC+  G    G R    +     ++  +   + L+ + 
Sbjct: 324 IFQKMLDEGVKPTDVSVMGALHACADLGDLERG-RFIHKLSVELELDRNVSVVNSLISMY 382

Query: 455 SRAGELEQALNIVESMPMKPNLALWGTLLLA-CRNHQNVTLAEVVVEGLVELKADDCGLY 513
            +  E++ A ++   +  +  +  W  ++L   +N + +       +        D   Y
Sbjct: 383 CKCKEVDTAASMFGKLQSR-TIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTY 441

Query: 514 VLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIK---EFVSGEIFDVQSE 570
           V +    A+  +  HA  I  ++ +  + K    +   +D   K     ++  IFD+ SE
Sbjct: 442 VSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSE 501



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 1/149 (0%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A  +F ++        N MI G+ Q+  P +AL+++  M+ + +  D +TY  V+ A
Sbjct: 388 VDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITA 447

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
              L        IHG V++     +VFV   L+ MY+KCG +  AR +F+    + + +W
Sbjct: 448 IAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTW 507

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAI 210
           N ++ G+   G    A E+F+EM QK  I
Sbjct: 508 NAMIDGYGTHGIGKAALELFEEM-QKGTI 535


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  318 bits (814), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 162/497 (32%), Positives = 273/497 (54%), Gaps = 39/497 (7%)

Query: 115 YPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174
           Y  ++++C     L +G ++H  +   GF+  +F++N L+ MY+KC  +  ++ +F+   
Sbjct: 73  YSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMP 132

Query: 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY--------------- 219
            +DL SWN+++ G+ + G + +A+ +FD+MP++D  SW+ MI GY               
Sbjct: 133 ERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRM 192

Query: 220 -------RKKKGDISSARILFEHMPI-----------------KDLISWNSMIDGYAKIG 255
                  +  K  +SSA      +P                   D + W+++ D Y K G
Sbjct: 193 MKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCG 252

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
            +  A+ +F++M +R++ +W+ MID Y Q G  KE   LF ++L  G+RP+  +  G ++
Sbjct: 253 SIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLN 312

Query: 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS 375
           ACA   + +LGK +H +M R          +AL+ MY KCG++  A R+F    + ++ S
Sbjct: 313 ACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFS 372

Query: 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMK 435
           +  +IAG   NG  +EA++ F  +   G   D + F+GVL AC+H+GL  +G   F S+K
Sbjct: 373 WTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIK 432

Query: 436 RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLA 495
              G+    +HY+C++DLL+R+G+ ++A NI+  M MKP+  LW +LL  CR H N+ LA
Sbjct: 433 EQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLA 492

Query: 496 EVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGN 555
           +   E L E++ ++   YV L+NIYA AGMW    +IRK M  R + K+ G S I I  +
Sbjct: 493 QRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRD 552

Query: 556 IKEFVSGEIFDVQSEEL 572
           +  F+ G+    +S+E+
Sbjct: 553 VHVFLVGDDSHPKSKEI 569



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 112/245 (45%), Gaps = 19/245 (7%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++++A  +F+++   +      MI  Y Q    ++    + ++ R G+  + +T+  VL 
Sbjct: 253 SIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLN 312

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC        G ++HG + ++GF    F  + L+ MYSKCG+M  A  VF+ +   DL S
Sbjct: 313 ACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFS 372

Query: 181 WNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           W  ++ G+ + G+  +A   F+ +     Q D I++  ++       G +      F   
Sbjct: 373 WTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSAC-AHAGLVDKGLDYFH-- 429

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEM----------PERNVFSWSIMIDGYAQHG 286
            IK+        D YA I DL+A    F+E           P++  F W+ ++ G   HG
Sbjct: 430 SIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDK--FLWASLLGGCRIHG 487

Query: 287 NPKEA 291
           N K A
Sbjct: 488 NLKLA 492


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 177/526 (33%), Positives = 293/526 (55%), Gaps = 7/526 (1%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +++A ++F+++ + +    NT++ GY+Q+   + AL    +M  + L     T   VL A
Sbjct: 186 VNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPA 245

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
              L  +  G EIHG  ++ GF   V +   L+ MY+KCG +  AR +F+G   +++VSW
Sbjct: 246 VSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSW 305

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK---KKGDISSARILF----E 234
           N ++  +V+     +A  +F +M  +      + + G        GD+   R +     E
Sbjct: 306 NSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVE 365

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
               +++   NS+I  Y K  ++  A  +F ++  R + SW+ MI G+AQ+G P +AL  
Sbjct: 366 LGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNY 425

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           F +M  + V+PD  + +  I+A A++      KWIH  + RS +  ++ V TAL+DMY K
Sbjct: 426 FSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAK 485

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG++  AR IF  M++++V ++N MI G G +GFG+ AL+ F +M+   I  + + FL V
Sbjct: 486 CGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSV 545

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           + ACSHSGL   G + F  MK +  IE  ++HY  +VDLL RAG L +A + +  MP+KP
Sbjct: 546 ISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKP 605

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
            + ++G +L AC+ H+NV  AE   E L EL  DD G +VLL+NIY  A MWE   ++R 
Sbjct: 606 AVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRV 665

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFV 580
            M ++ ++K  G S++EI   +  F SG      S+++   ++  +
Sbjct: 666 SMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLI 711



 Score =  242 bits (617), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 154/491 (31%), Positives = 251/491 (51%), Gaps = 35/491 (7%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           ++P   LL+   +   + QIL  +  N L  E F  ++L+       ++  D+A R+F  
Sbjct: 37  EHPAALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSV--DEAARVFEP 94

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
           I      +++TM++G+ + S+  KAL F+V M+   +    Y + ++LK CG    L  G
Sbjct: 95  IDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVG 154

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            EIHG +VK GF  D+F + GL  MY+KC  +  AR VF+    +DLVSWN ++ G+ + 
Sbjct: 155 KEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQN 214

Query: 192 GEMGKAREVFDEMPQKD-------------------AISWSIMIDGYRKKKGDISSARIL 232
           G    A E+   M +++                    IS    I GY  + G  S   I 
Sbjct: 215 GMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNI- 273

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
                        +++D YAK G L  A+QLF+ M ERNV SW+ MID Y Q+ NPKEA+
Sbjct: 274 -----------STALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAM 322

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            +F++ML +GV+P  +SVMGA+ ACA +G L+ G++IH       +  ++ V  +LI MY
Sbjct: 323 LIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMY 382

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KC  +D A  +F  +  + ++S+N MI G   NG   +AL  F+QM +  +  D   ++
Sbjct: 383 CKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYV 442

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            V+ A +   +      I   + R C ++  +   + LVD+ ++ G +  A  I + M  
Sbjct: 443 SVITAIAELSITHHAKWIHGVVMRSC-LDKNVFVTTALVDMYAKCGAIMIARLIFDMMSE 501

Query: 473 KPNLALWGTLL 483
           + ++  W  ++
Sbjct: 502 R-HVTTWNAMI 511



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 124/496 (25%), Positives = 231/496 (46%), Gaps = 19/496 (3%)

Query: 89  QSSNPQKALSFYVNMKRKGLLVDNYTYP--FVLKACGVLMGLVEGTEIHGEVVKMGFLCD 146
           Q  NP      +++ +R  +  + Y +P   +L+ C     L E  +I   V K G   +
Sbjct: 13  QIPNPPSRHRHFLS-ERNYIPANVYEHPAALLLERCS---SLKELRQILPLVFKNGLYQE 68

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
            F    L+ ++ + G +  A  VFE  + K  V ++ +L+GF +  ++ KA + F  M  
Sbjct: 69  HFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRY 128

Query: 207 KDAISWSIMIDGYRKKKGDISSARI-------LFEHMPIKDLISWNSMIDGYAKIGDLVA 259
            D            K  GD +  R+       L +     DL +   + + YAK   +  
Sbjct: 129 DDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNE 188

Query: 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
           A+++F+ MPER++ SW+ ++ GY+Q+G  + AL + + M  + ++P  I+++  + A + 
Sbjct: 189 ARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSA 248

Query: 320 VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVM 379
           +  + +GK IH +  RS     + + TAL+DMY KCGSL+ AR++F  M ++NV+S+N M
Sbjct: 249 LRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSM 308

Query: 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439
           I     N   +EA+  F +M  EG+   D+  +G L AC+  G    G R    +    G
Sbjct: 309 IDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERG-RFIHKLSVELG 367

Query: 440 IEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA-CRNHQNVTLAEVV 498
           ++  +   + L+ +  +  E++ A ++   +  +  L  W  ++L   +N + +      
Sbjct: 368 LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSR-TLVSWNAMILGFAQNGRPIDALNYF 426

Query: 499 VEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIK- 557
            +        D   YV +    A+  +  HA  I  ++ +  + K    +   +D   K 
Sbjct: 427 SQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKC 486

Query: 558 --EFVSGEIFDVQSEE 571
               ++  IFD+ SE 
Sbjct: 487 GAIMIARLIFDMMSER 502


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 186/554 (33%), Positives = 297/554 (53%), Gaps = 81/554 (14%)

Query: 68  LFNQ-IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
           LFN+ + + + +  N++I    +S +  +AL  + +M++  L     ++P  +KAC  L 
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
            +  G + H +    G+  D+FV + LI MYS CG                         
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCG------------------------- 125

Query: 187 GFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM---------- 236
                 ++  AR+VFDE+P++D +SW+ MI GY    G+   A  LF+ +          
Sbjct: 126 ------KLEDARKVFDEIPKRDIVSWTSMIRGY-DLNGNALDAVSLFKDLLVDENDDDDA 178

Query: 237 ------------------PIKDLIS-----------------WNSMIDGYAKIGD--LVA 259
                             P K L                    N+++D YAK G+  +  
Sbjct: 179 MFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAV 238

Query: 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP-DVISVMGAISACA 318
           A+++F+++ +++  S++ ++  YAQ G   EA  +FR ++   V   + I++   + A +
Sbjct: 239 ARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVS 298

Query: 319 QVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNV 378
             GAL +GK IH  + R  +  D+IV T++IDMY KCG ++ AR+ F  M  KNV S+  
Sbjct: 299 HSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTA 358

Query: 379 MIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC 438
           MIAG GM+G   +AL+ F  M   G+  + + F+ VL ACSH+GL  EG+R F +MK   
Sbjct: 359 MIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRF 418

Query: 439 GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVV 498
           G+EP LEHY C+VDLL RAG L++A ++++ M MKP+  +W +LL ACR H+NV LAE+ 
Sbjct: 419 GVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEIS 478

Query: 499 VEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKE 558
           V  L EL + +CG Y+LLS+IYADAG W+   R+R +M+ R + K  G S++E++G +  
Sbjct: 479 VARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHV 538

Query: 559 FVSGEIFDVQSEEL 572
           F+ G+    Q E++
Sbjct: 539 FLIGDEEHPQREKI 552



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 171/350 (48%), Gaps = 25/350 (7%)

Query: 42  TEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYV 101
           ++ F  S L++  ++   L  + A ++F++I + +     +MIRGY  + N   A+S + 
Sbjct: 109 SDIFVSSALIVMYSTCGKL--EDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFK 166

Query: 102 NM------KRKGLLVDNYTYPFVLKACGVL--MGLVEGTEIHGEVVKMGFLCDVFVVNGL 153
           ++          + +D+     V+ AC  +   GL E   IH  V+K GF   V V N L
Sbjct: 167 DLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTE--SIHSFVIKRGFDRGVSVGNTL 224

Query: 154 IGMYSKCGHMGCA--RSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK---- 207
           +  Y+K G  G A  R +F+    KD VS+N ++  + + G   +A EVF  + +     
Sbjct: 225 LDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVT 284

Query: 208 -DAISWSIMIDGYRKKKGDISSARILFEH---MPIKD-LISWNSMIDGYAKIGDLVAAQQ 262
            +AI+ S ++       G +   + + +    M ++D +I   S+ID Y K G +  A++
Sbjct: 285 FNAITLSTVLLAV-SHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARK 343

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
            F+ M  +NV SW+ MI GY  HG+  +AL LF  M+  GVRP+ I+ +  ++AC+  G 
Sbjct: 344 AFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGL 403

Query: 323 LDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
              G +W +    R  +   +     ++D+  + G L +A  +   M  K
Sbjct: 404 HVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMK 453


>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
 gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
          Length = 623

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 163/466 (34%), Positives = 269/466 (57%), Gaps = 33/466 (7%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           +V   N ++  Y+  G +G A ++F+   ++D  SWN++L   V  G + KARE+F  MP
Sbjct: 135 NVVSWNTMLEAYAAAGRVGDACALFDRMPVRDAGSWNILLATLVRSGSVDKARELFGRMP 194

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKI----------- 254
           ++D ++W+ M+DG   + G +  AR+LF+ MP ++++SWN+MI GY +            
Sbjct: 195 ERDVMAWTTMVDGV-ARSGKVDEARVLFDSMPERNVVSWNAMISGYTRNHRIDEALDLFM 253

Query: 255 --------------------GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
                                DL  A++LF+EMPERNV +W+ M++GY +    + AL L
Sbjct: 254 KMPERDIASCNIMVTGFIQNKDLKRARELFDEMPERNVVTWTTMMNGYLKGKQSELALGL 313

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           F  ML  G RP+ ++ +GA+ AC+ + AL  GK +H  + ++    D  V++AL+++Y K
Sbjct: 314 FSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFVESALMNVYAK 373

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG +  AR++F    +K++IS+N +IA    +G G EA+  + +M+  G   +D+ ++ +
Sbjct: 374 CGEIGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTYVVL 433

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L ACSHSGL  EG +IF+SM     I  + EHY+CL+DL SRAG L+ A  ++  + +KP
Sbjct: 434 LSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKP 493

Query: 475 -NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
            + ++W  LL  C  H N ++  +    L++ + D+ G Y LLSNIYA AG W+ A  IR
Sbjct: 494 ASGSVWSALLGGCNAHGNESIGNLAARNLLQAEPDNAGTYTLLSNIYASAGKWKEAAEIR 553

Query: 534 KMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSF 579
             M  R +KK+ G S IE+   +  FV+ +    +S+ +  ++Q+ 
Sbjct: 554 SEMNNRGLKKQPGCSWIEVANKVHVFVARDKSHSESDLIYGLLQNI 599



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 199/402 (49%), Gaps = 20/402 (4%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIK-DLVSWNLVLRGFVECGEMGKAREVFDEM 204
           DV     L+  Y++ G +  AR +F+  + + ++V+W  +L G+     + +A  +F  M
Sbjct: 72  DVVSWTALVSAYARRGMLRDARELFDRPDARRNVVTWTALLSGYARARLVDEAEALFQRM 131

Query: 205 PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
           PQ++ +SW+ M++ Y    G +  A  LF+ MP++D  SWN ++    + G +  A++LF
Sbjct: 132 PQRNVVSWNTMLEAY-AAAGRVGDACALFDRMPVRDAGSWNILLATLVRSGSVDKARELF 190

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
             MPER+V +W+ M+DG A+ G   EA  LF  M       +V+S    IS   +   +D
Sbjct: 191 GRMPERDVMAWTTMVDGVARSGKVDEARVLFDSM----PERNVVSWNAMISGYTRNHRID 246

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
               + +FMK      D+     ++  +++   L  AR +F  M ++NV+++  M+ G  
Sbjct: 247 EA--LDLFMKMPE--RDIASCNIMVTGFIQNKDLKRARELFDEMPERNVVTWTTMMNGYL 302

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444
                E AL  F+ M   G   + + FLG L ACS      EG ++ Q +   C    + 
Sbjct: 303 KGKQSELALGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMI---CKTTFQF 359

Query: 445 EHY--SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
           + +  S L+++ ++ GE+  A  + + +  + +L  W  ++ A  +H     A ++ E +
Sbjct: 360 DAFVESALMNVYAKCGEIGLARKLFD-LSREKDLISWNGIIAAYAHHGVGIEAILLYEKM 418

Query: 503 VE--LKADDCGLYVLLSNIYADAGMWEHALRI-RKMMRKRKI 541
            E   + +D    VLLS   + +G+ +  L+I   M+  R I
Sbjct: 419 QENGYRPNDVTYVVLLSAC-SHSGLVDEGLKIFESMVNDRSI 459



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 166/377 (44%), Gaps = 80/377 (21%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D+A  LF ++ + +     TM+ G  +S    +A   + +M  +              
Sbjct: 182 SVDKARELFGRMPERDVMAWTTMVDGVARSGKVDEARVLFDSMPER-------------- 227

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
                                    +V   N +I  Y++   +  A  +F     +D+ S
Sbjct: 228 -------------------------NVVSWNAMISGYTRNHRIDEALDLFMKMPERDIAS 262

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK----------------- 223
            N+++ GF++  ++ +ARE+FDEMP+++ ++W+ M++GY K K                 
Sbjct: 263 CNIMVTGFIQNKDLKRARELFDEMPERNVVTWTTMMNGYLKGKQSELALGLFSGMLMAGT 322

Query: 224 --------GDISSARIL--------FEHMPIKDLISWNSMIDG-----YAKIGDLVAAQQ 262
                   G + +   L           M  K    +++ ++      YAK G++  A++
Sbjct: 323 RPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFVESALMNVYAKCGEIGLARK 382

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           LF+   E+++ SW+ +I  YA HG   EA+ L+ +M   G RP+ ++ +  +SAC+  G 
Sbjct: 383 LFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTYVVLLSACSHSGL 442

Query: 323 LDLGKWIHVFMKRSR-ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
           +D G  I   M   R I +     T LID+  + G LD+A+R+ + +  K   S +V  A
Sbjct: 443 VDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPA-SGSVWSA 501

Query: 382 GL-GMNGFGEEALKCFA 397
            L G N  G E++   A
Sbjct: 502 LLGGCNAHGNESIGNLA 518



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 142/324 (43%), Gaps = 61/324 (18%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++ +A  LF+++ + N     TM+ GY +    + AL  +  M   G   +  T+   L 
Sbjct: 275 DLKRARELFDEMPERNVVTWTTMMNGYLKGKQSELALGLFSGMLMAGTRPNQVTFLGALD 334

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L EG ++H  + K  F  D FV + L+ +Y+KCG +G AR +F+ S  KDL+S
Sbjct: 335 ACSDLAALCEGKQVHQMICKTTFQFDAFVESALMNVYAKCGEIGLARKLFDLSREKDLIS 394

Query: 181 WNLVLRGFVE--------------------------------CGEMGKARE---VFDEMP 205
           WN ++  +                                  C   G   E   +F+ M 
Sbjct: 395 WNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMV 454

Query: 206 QKDAIS-----WSIMIDGYRKKKGDISSARILFEHMPIKDLIS--WNSMI-----DGYAK 253
              +I+     ++ +ID    + G +  A+ L  ++ IK      W++++      G   
Sbjct: 455 NDRSIAVRDEHYTCLID-LCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNES 513

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313
           IG+L AA+ L    P+ N  +++++ + YA  G  KEA  +  EM  +G++         
Sbjct: 514 IGNL-AARNLLQAEPD-NAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQ------- 564

Query: 314 ISACAQVGALDLGKWIHVFMKRSR 337
              C+ +   ++   +HVF+ R +
Sbjct: 565 -PGCSWI---EVANKVHVFVARDK 584


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 199/569 (34%), Positives = 298/569 (52%), Gaps = 60/569 (10%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D ++ LF      +    NTMI  ++QS    +AL+F+  M  +G+ +D  T   VL A
Sbjct: 247 VDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPA 306

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCD-VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           C  L  L  G EIH  V++   L +  FV + L+ MY  C  +   R VF+    + +  
Sbjct: 307 CSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIEL 366

Query: 181 WNLVLRGFVECGEMGKAREVFDEM-------PQK-------------DAISWSIMIDGYR 220
           WN ++ G+   G   KA  +F EM       P               +A S    I GY 
Sbjct: 367 WNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYA 426

Query: 221 KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMID 280
            K G        F+    +D    N+++D Y+++G +  ++ +F+ M  R+  SW+ MI 
Sbjct: 427 VKLG--------FK----EDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMIT 474

Query: 281 GYAQHGNPKEALYLFREM-----------------LCQGVRPDVISVMGAISACAQVGAL 323
           GY   G    AL L  EM                      +P+ I++M  +  CA + A+
Sbjct: 475 GYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAI 534

Query: 324 DLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383
             GK IH +  R+ +  D+ V +AL+DMY KCG L+ +RR+F  M  KNVI++NV+I   
Sbjct: 535 AKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMAC 594

Query: 384 GMNGFGEEALKCFAQMETEG-----IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC 438
           GM+G GEEAL+ F  M  E         +++ F+ V  ACSHSGL +EG  +F  MK   
Sbjct: 595 GMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDH 654

Query: 439 GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK-PNLALWGTLLLACRNHQNVTLAEV 497
           G+EP  +HY+C+VDLL RAG+LE+A  +V +MP +   +  W +LL ACR HQNV L EV
Sbjct: 655 GVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEV 714

Query: 498 VVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIK 557
             + L+ L+ +    YVLLSNIY+ AG+W  A+ +RK MR+  +KKE G S IE    + 
Sbjct: 715 AAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVH 774

Query: 558 EFVSGEIFDVQSEELELVIQSFVKTTIER 586
           +F++G++   QSE+L      F++T  E+
Sbjct: 775 KFMAGDVSHPQSEQL----HGFLETLSEK 799



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/430 (27%), Positives = 210/430 (48%), Gaps = 50/430 (11%)

Query: 84  IRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGF 143
           +R  T+S++ ++A+S Y+ M   G   DN+ +P VLKA   L  L  G +IH   VK G+
Sbjct: 64  LRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGY 123

Query: 144 -LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFD 202
               V V N L+ MY KCG +G    VF+    +D VSWN  +       +  +A E F 
Sbjct: 124 GSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFR 183

Query: 203 EMPQKD-----------AISWSIM-----------IDGYRKKKGDISSARILFEHMPIKD 240
            M  ++           A++ S +           + GY  + GD             + 
Sbjct: 184 AMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGD-------------QK 230

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
             + N+++  YAK+G +  ++ LF    +R++ SW+ MI  ++Q     EAL  FR M+ 
Sbjct: 231 TFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVL 290

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR-ITMDMIVQTALIDMYMKCGSLD 359
           +GV  D +++   + AC+ +  LD+GK IH ++ R+  +  +  V +AL+DMY  C  ++
Sbjct: 291 EGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVE 350

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM-ETEGIPKDDLIFLGVLIAC 418
             RR+F  +  + +  +N MI+G   NG  E+AL  F +M +  G+  +      V+ AC
Sbjct: 351 SGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPAC 410

Query: 419 SH-----SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
            H     +  +  GY +    K    ++      + L+D+ SR G+++ +  I +SM ++
Sbjct: 411 VHCEAFSNKESIHGYAVKLGFKEDRYVQ------NALMDMYSRMGKMDISETIFDSMEVR 464

Query: 474 PNLALWGTLL 483
             ++ W T++
Sbjct: 465 DRVS-WNTMI 473



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 173/367 (47%), Gaps = 37/367 (10%)

Query: 35  LTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQ 94
           L  NDLI   F  S L+      N   ++   R+F+ I      + N MI GY ++   +
Sbjct: 324 LRNNDLIENSFVGSALVDMYC--NCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDE 381

Query: 95  KALSFYVNM-KRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGL 153
           KAL  ++ M K  GLL +  T   V+ AC           IHG  VK+GF  D +V N L
Sbjct: 382 KALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNAL 441

Query: 154 IGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM--------- 204
           + MYS+ G M  + ++F+  E++D VSWN ++ G+V  G    A  +  EM         
Sbjct: 442 MDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDV 501

Query: 205 -----------PQK-DAISWSIMIDGYR-----KKKGDISSARILFEHMPIKDLISWNSM 247
                      P K +AI+   ++ G        K  +I +  I   +M   D+   +++
Sbjct: 502 KKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAI--RNMLASDITVGSAL 559

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR--- 304
           +D YAK G L  ++++FNEMP +NV +W+++I     HG  +EAL LF+ M+ +  R   
Sbjct: 560 VDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGE 619

Query: 305 --PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA-LIDMYMKCGSLDEA 361
             P+ ++ +   +AC+  G +  G  +   MK            A ++D+  + G L+EA
Sbjct: 620 AKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEA 679

Query: 362 RRIFYSM 368
             +  +M
Sbjct: 680 YELVNTM 686



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 1/157 (0%)

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK 327
           P R+  SW   +    +  + +EA+  + EM   G RPD  +    + A + +  L  G+
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 328 WIH-VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
            IH   +K    +  + V   L++MY KCG + +  ++F  +T ++ +S+N  IA L   
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
              E+AL+ F  M+ E +       + V +ACS+ G+
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGV 209


>gi|356510733|ref|XP_003524089.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 649

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 182/512 (35%), Positives = 291/512 (56%), Gaps = 34/512 (6%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           MDQA +LFN + + N   +N +I G+  + + + A+ F+  M                  
Sbjct: 150 MDQALKLFNAMPEHNAVSYNAVITGFLLNGDVESAVGFFRTMPEHD----------STSL 199

Query: 122 CGVLMGLVEGTEIH---GEVVKMGFLCD-----VFVVNGLIGMYSKCGHMGCARSVFE-- 171
           C ++ GLV   E+    G + + G   D     V   N LI  Y + GH+  AR +F+  
Sbjct: 200 CALISGLVRNGELDLAAGILRECGNGDDGKDDLVHAYNTLIAGYGQRGHVEEARRLFDVI 259

Query: 172 ------GSEIK-----DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR 220
                 G+E K     ++VSWN ++  +V+ G++  ARE+FD M ++D  SW+ +I  Y 
Sbjct: 260 PDDDDDGNEGKRRFRRNVVSWNSMMMCYVKAGDIVFARELFDRMVERDNCSWNTLISCY- 318

Query: 221 KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMID 280
            +  ++  A  LF  MP  D++SWNS+I G A+ GDL  A+  F  MP +N+ SW+ +I 
Sbjct: 319 VQISNMEEASKLFREMPSPDVLSWNSIISGLAQKGDLNLAKDFFERMPHKNLISWNTIIA 378

Query: 281 GYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM 340
           GY ++ + K A+ LF EM  +G RPD  ++   IS    +  L LGK +H  + ++ +  
Sbjct: 379 GYEKNEDYKGAIKLFSEMQLEGERPDKHTLSSVISVSTGLVDLYLGKQLHQLVTKT-VLP 437

Query: 341 DMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
           D  +  +LI MY +CG++ +A  +F  +   K+VI++N MI G   +G   EAL+ F  M
Sbjct: 438 DSPINNSLITMYSRCGAIVDACTVFNEIKLYKDVITWNAMIGGYASHGSAAEALELFKLM 497

Query: 400 ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
           +   I    + F+ VL AC+H+GL  EG+R F+SM    GIEP++EH++ LVD+L R G+
Sbjct: 498 KRLKIHPTYITFISVLNACAHAGLVEEGWRQFKSMINDYGIEPRVEHFASLVDILGRQGQ 557

Query: 460 LEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519
           L++A++++ +MP KP+ A+WG LL ACR H NV LA V  + L+ L+ +    YVLL N+
Sbjct: 558 LQEAMDLINTMPFKPDKAVWGALLGACRVHNNVELALVAADALIRLEPESSAPYVLLYNM 617

Query: 520 YADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
           YA+ G W+ A  +R +M ++ +KK+ G S ++
Sbjct: 618 YANLGQWDDAESVRVLMEEKNVKKQAGYSWVD 649



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 177/343 (51%), Gaps = 33/343 (9%)

Query: 159 KCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDG 218
           + G +  AR++F+  + +D V+WN ++ G+V+  E+ +AR++FDEMP++D +SW++++ G
Sbjct: 50  RSGRISEARTLFDSMKRRDTVTWNSMISGYVQRREIARARQLFDEMPRRDVVSWNLIVSG 109

Query: 219 YRKKKGD--ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
           Y    G   +   R LFE MP +D +SWN++I GYAK G +  A +LFN MPE N  S++
Sbjct: 110 YFSCCGSRFVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMPEHNAVSYN 169

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS 336
            +I G+  +G+ + A+  FR M       D  S+   IS   + G LDL   I       
Sbjct: 170 AVITGFLLNGDVESAVGFFRTM----PEHDSTSLCALISGLVRNGELDLAAGILRECGNG 225

Query: 337 RITMDMIVQ--TALIDMYMKCGSLDEARRIFYSMT-------------KKNVISYNVMIA 381
               D +V     LI  Y + G ++EARR+F  +              ++NV+S+N M+ 
Sbjct: 226 DDGKDDLVHAYNTLIAGYGQRGHVEEARRLFDVIPDDDDDGNEGKRRFRRNVVSWNSMMM 285

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS-HSGLATEGYRIFQSMKRHCGI 440
                G    A + F +M    + +D+  +   LI+C        E  ++F+ M      
Sbjct: 286 CYVKAGDIVFARELFDRM----VERDNCSW-NTLISCYVQISNMEEASKLFREMP----- 335

Query: 441 EPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
            P +  ++ ++  L++ G+L  A +  E MP K NL  W T++
Sbjct: 336 SPDVLSWNSIISGLAQKGDLNLAKDFFERMPHK-NLISWNTII 377



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 134/313 (42%), Gaps = 42/313 (13%)

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           N  +    + G +  A+ LF+ M  R+  +W+ MI GY Q      A  LF EM     R
Sbjct: 42  NKKLSNLIRSGRISEARTLFDSMKRRDTVTWNSMISGYVQRREIARARQLFDEM----PR 97

Query: 305 PDVIS----VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
            DV+S    V G  S C      +  +   +  +R     D +    +I  Y K G +D+
Sbjct: 98  RDVVSWNLIVSGYFSCCGSRFVEEGRRLFELMPQR-----DCVSWNTVISGYAKNGRMDQ 152

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           A ++F +M + N +SYN +I G  +NG  E A+  F  M     P+ D   L  LI    
Sbjct: 153 ALKLFNAMPEHNAVSYNAVITGFLLNGDVESAVGFFRTM-----PEHDSTSLCALI---- 203

Query: 421 SGLATEG-YRIFQSMKRHCGI----EPKLEH-YSCLVDLLSRAGELEQALNIVESMP--- 471
           SGL   G   +   + R CG     +  L H Y+ L+    + G +E+A  + + +P   
Sbjct: 204 SGLVRNGELDLAAGILRECGNGDDGKDDLVHAYNTLIAGYGQRGHVEEARRLFDVIPDDD 263

Query: 472 ---------MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522
                     + N+  W ++++      ++  A  + + +VE   D+C    L+S     
Sbjct: 264 DDGNEGKRRFRRNVVSWNSMMMCYVKAGDIVFARELFDRMVE--RDNCSWNTLISCYVQI 321

Query: 523 AGMWEHALRIRKM 535
           + M E +   R+M
Sbjct: 322 SNMEEASKLFREM 334



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 125/276 (45%), Gaps = 40/276 (14%)

Query: 48  SQLLMSLTSPNTL-------------NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQ 94
           S+L   + SP+ L             +++ A+  F ++   N    NT+I GY ++ + +
Sbjct: 328 SKLFREMPSPDVLSWNSIISGLAQKGDLNLAKDFFERMPHKNLISWNTIIAGYEKNEDYK 387

Query: 95  KALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLI 154
            A+  +  M+ +G   D +T   V+     L+ L  G ++H  V K   L D  + N LI
Sbjct: 388 GAIKLFSEMQLEGERPDKHTLSSVISVSTGLVDLYLGKQLHQLVTKT-VLPDSPINNSLI 446

Query: 155 GMYSKCGHMGCARSVFEGSEI-KDLVSWNLVLRGFVECGEMGKAREVFDEMPQ------- 206
            MYS+CG +  A +VF   ++ KD+++WN ++ G+   G   +A E+F  M +       
Sbjct: 447 TMYSRCGAIVDACTVFNEIKLYKDVITWNAMIGGYASHGSAAEALELFKLMKRLKIHPTY 506

Query: 207 ------KDAISWSIMI-DGYRKKKGDISSARI--LFEHMPIKDLISWNSMIDGYAKIGDL 257
                  +A + + ++ +G+R+ K  I+   I    EH          S++D   + G L
Sbjct: 507 ITFISVLNACAHAGLVEEGWRQFKSMINDYGIEPRVEHFA--------SLVDILGRQGQL 558

Query: 258 VAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEAL 292
             A  L N MP + +   W  ++     H N + AL
Sbjct: 559 QEAMDLINTMPFKPDKAVWGALLGACRVHNNVELAL 594


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 174/518 (33%), Positives = 284/518 (54%), Gaps = 11/518 (2%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           +  R+F+++   N      +I G  ++   ++AL ++  M R  +  D+YT+   LKAC 
Sbjct: 169 EGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACA 228

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
               L  G EIH + +K GF    FV N L  MY+KCG +    ++FE   ++D+VSW  
Sbjct: 229 DSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTT 288

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDA----ISWSIMIDG----YRKKKGDISSARILFEH 235
           ++   V+ G+   A + F  M + D      +++ +I G     R + G+   A IL  H
Sbjct: 289 IITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALIL--H 346

Query: 236 MPIKDLIS-WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
           + +   +S  NS++  YAK G L ++  +F+EM  R++ SWS +I GY Q G+  EA  L
Sbjct: 347 LGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFEL 406

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
              M  +G +P   ++   +SAC  +  L+ GK +H ++    +    +V +ALI+MY K
Sbjct: 407 LSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCK 466

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CGS++EA RIF +    +++S+  MI G   +G+  E +  F ++   G+  D + F+GV
Sbjct: 467 CGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGV 526

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L ACSH+GL   G+  F +M +   I P  EHY C++DLL RAG L  A +++E+MP   
Sbjct: 527 LSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHR 586

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           +  +W TLL ACR H +V       E +++L+ +  G ++ L+NIYA  G W  A  IRK
Sbjct: 587 DDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRK 646

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           +M+ + + KE G S I++   +  FV+G+    Q E++
Sbjct: 647 LMKSKGVIKEPGWSWIKVKDLVFAFVAGDRSHPQGEDI 684



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/463 (25%), Positives = 221/463 (47%), Gaps = 17/463 (3%)

Query: 16  VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
           + L  + ++  ++ Q +  ++  DL      L +L+       T ++  A R+F+++ Q 
Sbjct: 25  IDLQVLERSNDNLSQNIHFISQTDLPESNKQLKELV------KTGHLGNARRMFDKMSQK 78

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMK-RKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           +     T+I GY  +++  +AL  + NM+   GL +D +      KACG+   +  G  +
Sbjct: 79  DEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELL 138

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           HG  VK G +  VFV + L+ MY+K G +   R VF    ++++VSW  ++ G V  G  
Sbjct: 139 HGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYN 198

Query: 195 GKAREVFDEMPQK----DAISWSIMI----DGYRKKKGDISSARILFEHMPIKDLISWNS 246
            +A   F EM +     D+ +++I +    D      G    A+ + +   +   ++ N+
Sbjct: 199 KEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVA-NT 257

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           +   Y K G L     LF +M  R+V SW+ +I    Q G  + A+  F  M    V P+
Sbjct: 258 LATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPN 317

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
             +    IS CA +  ++ G+ +H  +    +   + V+ +++ MY KCG L  +  IF+
Sbjct: 318 EYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFH 377

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            MT+++++S++ +IAG    G   EA +  + M  EG    +     VL AC +  +   
Sbjct: 378 EMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEH 437

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
           G ++  +     G+E      S L+++  + G +E+A  I ++
Sbjct: 438 GKQL-HAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDA 479



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 130/246 (52%), Gaps = 5/246 (2%)

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           DL   N  +    K G L  A+++F++M +++  SW+ +I GY    +  EAL LF+ M 
Sbjct: 48  DLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMR 107

Query: 300 CQ-GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
            + G+R D   +  A  AC     ++ G+ +H +  ++ +   + V +AL+DMY K G +
Sbjct: 108 VESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKI 167

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
            E RR+F+ M  +NV+S+  +I GL   G+ +EAL  F++M    +  D   F   L AC
Sbjct: 168 FEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKAC 227

Query: 419 SHSGLATEGYRIF-QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
           + SG    G  I  Q+MK+  G +      + L  + ++ G+LE  L + E M M+ ++ 
Sbjct: 228 ADSGALNYGREIHAQAMKK--GFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMR-DVV 284

Query: 478 LWGTLL 483
            W T++
Sbjct: 285 SWTTII 290


>gi|357143748|ref|XP_003573036.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 484

 Score =  317 bits (813), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 151/341 (44%), Positives = 221/341 (64%)

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           LF+ MP + ++++N+MI G  + G + AA+++F+EMP  +  SW+ +IDG  ++G   EA
Sbjct: 128 LFDSMPDRSVVTYNTMITGLMRNGLVAAAREVFDEMPAPDKVSWTALIDGCVKNGRHDEA 187

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           +  F  ML  GV PD ++++ AISACA+VGAL LG W+H F+   R+  ++ V  +LIDM
Sbjct: 188 IDCFHSMLRDGVEPDYVTLVAAISACAEVGALGLGMWVHRFVVDKRLEHNVRVANSLIDM 247

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y +CG +D AR++F  + K+ V+S+N MI G   NG   +A++ F  M  EG   D + F
Sbjct: 248 YARCGQVDFARQVFGRIRKRTVVSWNSMIVGFAANGQYADAVEHFEAMRREGFKPDTVTF 307

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
            GVL ACSH+GL  EG R + +M+   GI  ++EHY C+VDLL RAG L +A+ +VESMP
Sbjct: 308 TGVLTACSHAGLTDEGLRYYDAMRTEHGIAARMEHYGCVVDLLGRAGRLGEAMRVVESMP 367

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           M+PN  + G LL  CR H +V LAE +++ L+E        YVLLSNIYA  G W  A +
Sbjct: 368 MRPNEVVLGALLAGCRMHGDVDLAEQLMQHLLEQDPGGDSNYVLLSNIYAAVGKWGGAGK 427

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           +R +M+ R +KK  G+S +EIDG + EFV G+    Q+ E+
Sbjct: 428 VRSLMKSRGVKKRPGQSTVEIDGEVHEFVCGDRSHPQAREV 468



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 137/298 (45%), Gaps = 49/298 (16%)

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMY--SKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
           +H   VK+ F C++ +   L   Y  S+  H+  A  +F+    + +V++N ++ G +  
Sbjct: 94  LHALAVKL-FPCNLLLCTCLARFYLASRLPHL--AIKLFDSMPDRSVVTYNTMITGLMRN 150

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS-------- 243
           G +  AREVFDEMP  D +SW+ +IDG   K G    A   F  M ++D +         
Sbjct: 151 GLVAAAREVFDEMPAPDKVSWTALIDGC-VKNGRHDEAIDCFHSM-LRDGVEPDYVTLVA 208

Query: 244 ---------------W-----------------NSMIDGYAKIGDLVAAQQLFNEMPERN 271
                          W                 NS+ID YA+ G +  A+Q+F  + +R 
Sbjct: 209 AISACAEVGALGLGMWVHRFVVDKRLEHNVRVANSLIDMYARCGQVDFARQVFGRIRKRT 268

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIH 330
           V SW+ MI G+A +G   +A+  F  M  +G +PD ++  G ++AC+  G  D G ++  
Sbjct: 269 VVSWNSMIVGFAANGQYADAVEHFEAMRREGFKPDTVTFTGVLTACSHAGLTDEGLRYYD 328

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG 387
                  I   M     ++D+  + G L EA R+  SM  + N +    ++AG  M+G
Sbjct: 329 AMRTEHGIAARMEHYGCVVDLLGRAGRLGEAMRVVESMPMRPNEVVLGALLAGCRMHG 386



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 9/246 (3%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A  +F+++  P+      +I G  ++    +A+  + +M R G+  D  T    + AC  
Sbjct: 156 AREVFDEMPAPDKVSWTALIDGCVKNGRHDEAIDCFHSMLRDGVEPDYVTLVAAISACAE 215

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           +  L  G  +H  VV      +V V N LI MY++CG +  AR VF     + +VSWN +
Sbjct: 216 VGALGLGMWVHRFVVDKRLEHNVRVANSLIDMYARCGQVDFARQVFGRIRKRTVVSWNSM 275

Query: 185 LRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSAR----ILFEHM 236
           + GF   G+   A E F+ M ++    D ++++ ++             R    +  EH 
Sbjct: 276 IVGFAANGQYADAVEHFEAMRREGFKPDTVTFTGVLTACSHAGLTDEGLRYYDAMRTEHG 335

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQHGNPKEALYLF 295
               +  +  ++D   + G L  A ++   MP R N      ++ G   HG+   A  L 
Sbjct: 336 IAARMEHYGCVVDLLGRAGRLGEAMRVVESMPMRPNEVVLGALLAGCRMHGDVDLAEQLM 395

Query: 296 REMLCQ 301
           + +L Q
Sbjct: 396 QHLLEQ 401



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 90/201 (44%), Gaps = 13/201 (6%)

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPK--EALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
             +P R+V SW+  I   A+ G+ +   A             P+ ++++  +SACA   +
Sbjct: 24  RRLPPRDVVSWTSAIARPAREGDLQGAAAALSAMLSSPAAPPPNDVTLLTVLSACAGDSS 83

Query: 323 LDLGKWIHVFMKRSRITM---DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVM 379
             L + + + +    + +   ++++ T L   Y+       A ++F SM  ++V++YN M
Sbjct: 84  SALARPLALSLHALAVKLFPCNLLLCTCLARFYLASRLPHLAIKLFDSMPDRSVVTYNTM 143

Query: 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439
           I GL  NG    A + F +M       D + +  ++  C  +G   E    F SM R  G
Sbjct: 144 ITGLMRNGLVAAAREVFDEMPA----PDKVSWTALIDGCVKNGRHDEAIDCFHSMLRD-G 198

Query: 440 IEPKLEHYSCLVDLLSRAGEL 460
           +EP    Y  LV  +S   E+
Sbjct: 199 VEPD---YVTLVAAISACAEV 216


>gi|195651797|gb|ACG45366.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 544

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 181/522 (34%), Positives = 287/522 (54%), Gaps = 50/522 (9%)

Query: 73  YQPNTYMHNTMIRGY-TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVL----MG 127
           + P+ + H  +++ Y +QS   + AL +  N+ R+         P +LKA        +G
Sbjct: 18  HDPDKWAH--LVKEYASQSLLREAALVYARNLPRR--THHQPLLPVLLKAAAASSPTELG 73

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL-- 185
           L  G  +H E +K  F  D+ V   ++ MY KCG +  AR  F+    ++++S+N +L  
Sbjct: 74  L--GKSLHAEALKSAFARDLLVGTTIVSMYCKCGALADARRAFDEMPDRNVISYNALLAG 131

Query: 186 -----------------------------RGFVECGEMGKAREVFDEMPQ--KDAISWSI 214
                                        RGF E G+M +AR  F+  P   +  ++W++
Sbjct: 132 YAVAGDMDGALALFGGMRSWTHVTWATLIRGFAEKGDMAEARRWFEATPPGMRTVVTWTV 191

Query: 215 MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
           ++ GY    GD+ +AR +F+ MP ++   W+SM+ GY K GD   A+ +F+ +P RN+ +
Sbjct: 192 LVQGY-VCAGDMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIPTRNLVN 250

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W+ +I GYAQ G  ++AL  F  ML + V+PD  ++   +SACAQ+G+L+ GK +H F+ 
Sbjct: 251 WNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKKVHDFIN 310

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
           +  I  +  V   LIDMY KCG L  AR IF SM  KN   +N MI+ L  +G  +EAL 
Sbjct: 311 QEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQSDEALH 370

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
            F QME  G   + +  L VL AC+H G   EG +IF  +  + G+   +EHY CLVDLL
Sbjct: 371 LFFQMERSGRKPNTITVLAVLGACTHGGFVDEGLQIFNKLDAY-GVGAGVEHYGCLVDLL 429

Query: 455 SRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK----ADDC 510
            RAG+L++A  IV +M  +PN  +WG+LL ACR H++  ++ +V E ++ L     + + 
Sbjct: 430 GRAGKLKEAYEIVNNMSEEPNEVIWGSLLGACRVHRDAEMSRLVTEEILRLHSFHASSND 489

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
             Y++L+NI A +  WE A ++R+ M +R ++K  G S +E+
Sbjct: 490 AEYIMLANIMAASERWEQAEQMRRKMARRGVEKTPGCSSLEL 531



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 76/146 (52%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           + ++A  +F++I   N    N +I GY Q    ++AL  +  M ++ +  D +T   +L 
Sbjct: 232 DAEEARAVFDRIPTRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLS 291

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L +G ++H  + +     + FV+NGLI MY+KCG +  AR +F+    K+   
Sbjct: 292 ACAQLGSLEQGKKVHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNEC 351

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQ 206
           WN ++      G+  +A  +F +M +
Sbjct: 352 WNTMISALASHGQSDEALHLFFQMER 377


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 176/531 (33%), Positives = 306/531 (57%), Gaps = 13/531 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           + +A ++F+++ + +    N M+ G  +++   +A+  +  M  +G+  D  T   VL  
Sbjct: 119 ISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPM 178

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C +L   V    +H   VK G   ++FV N LI +Y K G +  A+ VF G E +DLV+W
Sbjct: 179 CVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTW 238

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIM----IDGYRKKKGDISSARILFEHM- 236
           N ++ G  + G+   A ++F  M +   +S  ++    +     + GD  SA+ L  ++ 
Sbjct: 239 NSIISGCEQRGQTAAALKMFQGM-RGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVM 297

Query: 237 ----PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
                + D+I+ N+++D YAK+ ++ AAQ++F+ MP ++  SW+ +I GY Q+G   EA+
Sbjct: 298 RRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAV 357

Query: 293 YLFREML-CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
             +  M   +G++    + +  + A + +GAL  G  +H    +  + +D+ V T LID+
Sbjct: 358 ERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDL 417

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y KCG L EA  +F  M +++   +N +I+GLG++G G EAL  F++M+ EGI  D + F
Sbjct: 418 YAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTF 477

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           + +L ACSH+GL  +G   F  M+    I P  +HY+C+ D+L RAG+L++A N +++MP
Sbjct: 478 VSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMP 537

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           +KP+ A+WG LL ACR H NV + +V  + L EL  ++ G YVL+SN+YA  G W+    
Sbjct: 538 IKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDE 597

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFD--VQSEELELVIQSFV 580
           +R ++R++ ++K  G S IE+  ++  F SG   +   Q EE++  ++S +
Sbjct: 598 VRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLL 648



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 203/406 (50%), Gaps = 16/406 (3%)

Query: 80  HNTMIRGYTQSSNPQKALSFYVNMKRKG--LLVDNYTYPFVLKACGVLMGLVEGTEIHGE 137
           +NT+I  +++++ P+ A     ++         D +T+P +++A           ++H  
Sbjct: 36  NNTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAP---SNASAAQLHAC 92

Query: 138 VVKMGFL-CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGK 196
            +++G +   VF    L+  Y + G +  A  VF+    +D+ +WN +L G        +
Sbjct: 93  ALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAE 152

Query: 197 AREVFDEMPQKDAISWSIMIDGYRKK---KGDISSARILF----EHMPIKDLISWNSMID 249
           A  +F  M  +     ++ +          GD   A ++     +H   K+L   N++ID
Sbjct: 153 AVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALID 212

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
            Y K+G L  AQ +F+ M  R++ +W+ +I G  Q G    AL +F+ M   GV PDV++
Sbjct: 213 VYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLT 272

Query: 310 VMGAISACAQVGALDLGKWIHVF-MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           ++   SA AQ G     K +H + M+R     D+I   A++DMY K  +++ A+R+F SM
Sbjct: 273 LVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSM 332

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMET-EGIPKDDLIFLGVLIACSHSGLATEG 427
             ++ +S+N +I G   NG   EA++ +  M+  EG+      F+ VL A SH G   +G
Sbjct: 333 PVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQG 392

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
            R+  ++    G+   +   +CL+DL ++ G+L +A+ + E MP +
Sbjct: 393 MRM-HALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRR 437



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 130/240 (54%), Gaps = 5/240 (2%)

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           S++  Y + G +  A ++F+EM ER+V +W+ M+ G  ++    EA+ LF  M+ +GV  
Sbjct: 108 SLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAG 167

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D ++V   +  C  +G   L   +HV+  +  +  ++ V  ALID+Y K G L+EA+ +F
Sbjct: 168 DTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVF 227

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD--DLIFLGVLIACSHSGL 423
           + M  ++++++N +I+G    G    ALK F  M   G+  D   L+ L   IA    G 
Sbjct: 228 HGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGR 287

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
           + +    +  M+R   ++  +   + +VD+ ++   +E A  + +SMP++ +++ W TL+
Sbjct: 288 SAKSLHCY-VMRRGWDVDDIIAG-NAIVDMYAKLSNIEAAQRMFDSMPVQDSVS-WNTLI 344



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 120/272 (44%), Gaps = 48/272 (17%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM-KRKGLLVDNYTYPFVL 119
           N++ A+R+F+ +   ++   NT+I GY Q+    +A+  Y +M K +GL     T+  VL
Sbjct: 321 NIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVL 380

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
            A   L  L +G  +H   +K+G   DV+V   LI +Y+KCG +  A  +FE    +   
Sbjct: 381 PAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTG 440

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKD-------------AISWSIMIDGYRK----- 221
            WN ++ G    G   +A  +F  M Q+              A S + ++D  R      
Sbjct: 441 PWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVM 500

Query: 222 ---------------------KKGDISSARILFEHMPIK-DLISWNSM-----IDGYAKI 254
                                + G +  A    ++MPIK D   W ++     I G  ++
Sbjct: 501 QVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEM 560

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
           G  VA+Q LF   PE NV  + +M + YA+ G
Sbjct: 561 GK-VASQNLFELDPE-NVGYYVLMSNMYAKVG 590


>gi|297599623|ref|NP_001047477.2| Os02g0625100 [Oryza sativa Japonica Group]
 gi|125582938|gb|EAZ23869.1| hypothetical protein OsJ_07586 [Oryza sativa Japonica Group]
 gi|255671102|dbj|BAF09391.2| Os02g0625100 [Oryza sativa Japonica Group]
          Length = 493

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 170/477 (35%), Positives = 266/477 (55%), Gaps = 34/477 (7%)

Query: 78  YMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGE 137
           Y  N +IR  +  S     L F +N +   LL D+ +  F L  C  L      + +H  
Sbjct: 40  YSVNCLIRAASAPSASALLLRFLLNHR---LLPDHLSLSFSLHPCSRLPSHPVASVVHSL 96

Query: 138 VVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKA 197
            V++G   DV+VVN     Y     +  A  +F  +                       +
Sbjct: 97  AVRLGHARDVYVVNAAASAYFAAADVASAERLFSEA-----------------------S 133

Query: 198 REVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDL 257
           R+V       D ++W+ M+ G+    GD+  AR  F+ MP K+++SWN+M+  YA+ G L
Sbjct: 134 RDV------ADVVTWTTMVTGH-ANAGDVERARWFFDAMPEKNVVSWNTMLGAYARAGML 186

Query: 258 VAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISAC 317
             A++LF+ MP RN  +W  MI G  Q  + +EAL +F +M+  GV P+  +++  +SAC
Sbjct: 187 PKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMVASGVVPNEPALVSTVSAC 246

Query: 318 AQVGALDLGKWIHVFMKRS-RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISY 376
            Q+  ++ G W+H + +R     M  ++ TA++DMY KCGS+ +A R+F +M  +N+ S+
Sbjct: 247 TQLRWMEHGTWVHGYAERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAAMPVRNIYSW 306

Query: 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436
           N MIAGL MNG   +AL  F +M+  G+  +D+ F+G+L ACSHSGL  EG  +F  M  
Sbjct: 307 NSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEGRWLFYKMVN 366

Query: 437 HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAE 496
           H GI+P  EHY  +VDLL R+G + +A++ V+SMP++P+  LWG L  AC+ H  V L E
Sbjct: 367 HFGIQPVPEHYGLMVDLLGRSGHVREAVDFVKSMPVEPHPGLWGALAGACKIHGEVELGE 426

Query: 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEID 553
            V + L+EL+      Y+LLSNIYA +  W+    +R++++ RK+ K TG +++  D
Sbjct: 427 EVAKKLIELEPQHGSRYILLSNIYATSNRWDDMANVRRILKDRKVPKGTGNAIVGND 483



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 117/272 (43%), Gaps = 37/272 (13%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           + +A +LF+++   N     +MI G  QS + ++AL  + +M   G++ +       + A
Sbjct: 186 LPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMVASGVVPNEPALVSTVSA 245

Query: 122 CGVLMGLVEGTEIHGEVVK-MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           C  L  +  GT +HG   + +       +   ++ MY KCG +  A  VF    ++++ S
Sbjct: 246 CTQLRWMEHGTWVHGYAERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAAMPVRNIYS 305

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILF--EHMPI 238
           WN ++ G    G   +A  +F          W + + G R    DI+   +L    H  +
Sbjct: 306 WNSMIAGLAMNGSERQALSLF----------WKMQLAGVRPN--DITFIGLLSACSHSGL 353

Query: 239 KDLISW--NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
            D   W    M++ +               +PE     + +M+D   + G+ +EA+   +
Sbjct: 354 VDEGRWLFYKMVNHFG-----------IQPVPEH----YGLMVDLLGRSGHVREAVDFVK 398

Query: 297 EMLCQGVRPDVISVMGAIS-ACAQVGALDLGK 327
            M    V P    + GA++ AC   G ++LG+
Sbjct: 399 SM---PVEPHP-GLWGALAGACKIHGEVELGE 426


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 183/510 (35%), Positives = 283/510 (55%), Gaps = 32/510 (6%)

Query: 83  MIRGYTQSSNPQKALSFYVNMK-RKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKM 141
           MI G+ ++S  + ++  + +M    G   D  T   VL A   L  L  G +I    +K 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 142 GFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVF 201
           GF   V ++ GLI ++SKCG +  AR +F     KDL+S N ++ GF   GE   +  +F
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 202 DEM-PQKDAISWSIM------------------IDGYRKKKGDISSARILFEHMPIKDLI 242
            E+    + +S S +                  I G+  K G +S + +           
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSV----------- 169

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
              ++   Y ++ +++ A+QLF+E  E+ + SW+ MI G  Q+G    A+ LF+ M    
Sbjct: 170 -STALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNN 228

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           V P+ ++V   +SACAQ+GAL LG+W+H  +K +R   ++ V TALIDMY KCGS+  AR
Sbjct: 229 VNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVAR 288

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
            +F  M +KN +++N MI+G G++G G+EALK F  M +  +    L FL VL ACSH+G
Sbjct: 289 ELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAG 348

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
           L  EG  IF +M    G EP  EHY+C+VD+L RAG+L++AL  +++MP++P   +WG L
Sbjct: 349 LVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGAL 408

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
           L AC  H++  LA V  E L EL  ++ G YVL+SNIY+    +  A  +R++ +K+++ 
Sbjct: 409 LGACMIHKDTNLAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLA 468

Query: 543 KETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           K  G ++IEI      F SG+    QS+ +
Sbjct: 469 KTPGCTLIEIGQVPHVFTSGDQSHPQSKAI 498



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 125/272 (45%), Gaps = 7/272 (2%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A  LF +I + +    N MI G+T +   + ++  +  +   G  V + T   ++     
Sbjct: 85  ARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSSTIVGLIPVYSP 144

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
                    IHG  VK+G +    V   L  +Y +   M  AR +F+ S  K L SWN +
Sbjct: 145 FGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAM 204

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI-LFEHMPIK---- 239
           + G  + G    A  +F  M + +     + +         I +  +  + H  IK    
Sbjct: 205 ISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRF 264

Query: 240 --DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
             ++    ++ID YAK G +  A++LF+ MPE+N  +W+ MI GY  HG+ +EAL LF +
Sbjct: 265 ESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYD 324

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWI 329
           ML   V+P  ++ +  + AC+  G +  G  I
Sbjct: 325 MLSSSVKPTGLTFLSVLYACSHAGLVKEGDGI 356


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 181/539 (33%), Positives = 293/539 (54%), Gaps = 32/539 (5%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
            D A +LF  + + +T   N MI GY QS   +++L+F+  M   G+L D  T+  +L +
Sbjct: 290 FDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPS 349

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
                 L    +IH  +++     D+F+ + LI  Y KC  +  A+++F      D+V +
Sbjct: 350 VSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVF 409

Query: 182 NLVLRGFVECGEMGKAREVFD-----EMPQKDAISWSIM--------------IDGYRKK 222
             ++ G++  G    + E+F      ++   +    SI+              + G+  K
Sbjct: 410 TAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIK 469

Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
           KG  +   I              ++ID YAK G +  A ++F  + +R++ SW+ MI   
Sbjct: 470 KGFDNRCNI------------GCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRC 517

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
           AQ  NP  A+ +FR+M   G+  D +S+  A+SACA + +   GK IH FM +  +  D+
Sbjct: 518 AQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDV 577

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM-ET 401
             ++ LIDMY KCG+L  A  +F +M +KN++S+N +IA  G +G  +++L  F +M E 
Sbjct: 578 YSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEK 637

Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
            GI  D + FL ++ +C H G   EG R F+SM    GI+P+ EHY+C+VDL  RAG L 
Sbjct: 638 SGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLT 697

Query: 462 QALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521
           +A   V+SMP  P+  +WGTLL ACR H+NV LAEV    L++L   + G YVL+SN +A
Sbjct: 698 EAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHA 757

Query: 522 DAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFV 580
           +A  WE   ++R +M++R+++K  G S IEI+     FVSG++   +S  +  ++ S +
Sbjct: 758 NAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLL 816



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 221/450 (49%), Gaps = 9/450 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D   +LF+++ Q +  + N M+ GY +       +  +  M+   +  +  T+  VL  
Sbjct: 189 IDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSV 248

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C   + +  G ++HG VV  G   +  + N L+ MYSKCG    A  +F      D V+W
Sbjct: 249 CASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTW 308

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARI---LFE 234
           N ++ G+V+ G M ++   F EM       DAI++S ++    K +      +I   +  
Sbjct: 309 NCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMR 368

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
           H    D+   +++ID Y K   +  AQ +F++    +V  ++ MI GY  +G   ++L +
Sbjct: 369 HSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEM 428

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           FR ++   + P+ I+++  +     + AL LG+ +H F+ +        +  A+IDMY K
Sbjct: 429 FRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAK 488

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG ++ A  IF  ++K++++S+N MI     +     A+  F QM   GI  D +     
Sbjct: 489 CGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAA 548

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L AC++    + G  I   M +H  +   +   S L+D+ ++ G L+ A+N+ ++M  K 
Sbjct: 549 LSACANLPSESFGKAIHGFMIKH-SLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEK- 606

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVE 504
           N+  W +++ AC NH  +  +  +   +VE
Sbjct: 607 NIVSWNSIIAACGNHGKLKDSLCLFHEMVE 636



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 203/435 (46%), Gaps = 35/435 (8%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N++I  + ++    +AL+FY  M   G+  D  T+P ++KAC  L        +   V  
Sbjct: 107 NSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSS 166

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
           +G  C+ FV + LI  Y + G +     +F+    KD V WN++L G+ +CG +    + 
Sbjct: 167 LGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKG 226

Query: 201 FDEMPQKDAISWS--------------IMIDGYRKKKGDISSARILFEHMPIKDLISWNS 246
           F  M + D IS +              ++ID   +  G +  + + FE   IK     NS
Sbjct: 227 FSVM-RMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEG-SIK-----NS 279

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           ++  Y+K G    A +LF  M   +  +W+ MI GY Q G  +E+L  F EM+  GV PD
Sbjct: 280 LLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPD 339

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
            I+    + + ++   L+  K IH ++ R  I++D+ + +ALID Y KC  +  A+ IF 
Sbjct: 340 AITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFS 399

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF------LGVLIACSH 420
                +V+ +  MI+G   NG   ++L+ F  +    I  +++        +G+L+A   
Sbjct: 400 QCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKL 459

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
            G    G+ I +     C I         ++D+ ++ G +  A  I E +  K ++  W 
Sbjct: 460 -GRELHGFIIKKGFDNRCNIG------CAVIDMYAKCGRMNLAYEIFERLS-KRDIVSWN 511

Query: 481 TLLLACRNHQNVTLA 495
           +++  C    N + A
Sbjct: 512 SMITRCAQSDNPSAA 526



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 153/313 (48%), Gaps = 11/313 (3%)

Query: 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK 176
            +L+AC     L +G ++H  ++      D +    ++GMY+ CG       +F   +++
Sbjct: 40  LLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLR 99

Query: 177 --DLVSWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMID---GYRKKKG-DI 226
              +  WN ++  FV  G + +A   + +M       D  ++  ++      +  KG D 
Sbjct: 100 RSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDF 159

Query: 227 SSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
            S  +    M   + ++ +S+I  Y + G +    +LF+ + +++   W++M++GYA+ G
Sbjct: 160 LSDTVSSLGMDCNEFVA-SSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCG 218

Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
                +  F  M    + P+ ++    +S CA    +DLG  +H  +  S +  +  ++ 
Sbjct: 219 ALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKN 278

Query: 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK 406
           +L+ MY KCG  D+A ++F  M++ + +++N MI+G   +G  EE+L  F +M + G+  
Sbjct: 279 SLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLP 338

Query: 407 DDLIFLGVLIACS 419
           D + F  +L + S
Sbjct: 339 DAITFSSLLPSVS 351



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 107/235 (45%), Gaps = 4/235 (1%)

Query: 251 YAKIGDLVAAQQLFNEMPER--NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
           YA  G      ++F  +  R  ++  W+ +I  + ++G   +AL  + +MLC GV PDV 
Sbjct: 80  YAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVS 139

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           +    + AC  +       ++   +    +  +  V ++LI  Y++ G +D   ++F  +
Sbjct: 140 TFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRV 199

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
            +K+ + +NVM+ G    G  +  +K F+ M  + I  + + F  VL  C+   L   G 
Sbjct: 200 LQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGV 259

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
           ++   +    G++ +    + L+ + S+ G  + A  +   M  + +   W  ++
Sbjct: 260 QL-HGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMS-RADTVTWNCMI 312



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/233 (20%), Positives = 98/233 (42%), Gaps = 22/233 (9%)

Query: 314 ISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY--SMTKK 371
           + AC+    L  GK +H F+  + I+ D      ++ MY  CGS  +  ++FY   + + 
Sbjct: 42  LQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRS 101

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR-- 429
           ++  +N +I+    NG   +AL  + +M   G+  D   F  ++ AC    +A + ++  
Sbjct: 102 SIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKAC----VALKNFKGI 157

Query: 430 -IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
                     G++      S L+      G+++    + + + ++ +  +W  +L     
Sbjct: 158 DFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRV-LQKDCVIWNVML---NG 213

Query: 489 HQNVTLAEVVVEGLVELKAD---------DCGLYVLLSNIYADAGMWEHALRI 532
           +      + V++G   ++ D         DC L V  S +  D G+  H L +
Sbjct: 214 YAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVV 266


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 177/508 (34%), Positives = 283/508 (55%), Gaps = 30/508 (5%)

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
           + A  LF+++   +    N+MI GY  +   ++ L  Y  M   G+ VD  T   VL  C
Sbjct: 202 ESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGC 261

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
                L  G  +H   +K  F   +   N L+ MYSKCG +  A  VFE    +++VSW 
Sbjct: 262 ANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWT 321

Query: 183 LVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMPI 238
            ++ G+   G    A ++  +M ++    D ++ + ++     + G + + + + +++  
Sbjct: 322 SMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHAC-ARSGSLDNGKDVHDYIKA 380

Query: 239 KDLIS----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
            ++ S     N+++D YAK G + AA  +F+ M  +++ SW+ MI               
Sbjct: 381 NNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGE------------- 427

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
                   ++PD  ++   + ACA + AL+ GK IH ++ R+  + D  V  AL+D+Y+K
Sbjct: 428 --------LKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVK 479

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG L  AR +F  +  K+++S+ VMIAG GM+G+G EA+  F +M   GI  D++ F+ +
Sbjct: 480 CGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISI 539

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L ACSHSGL  +G+R F  MK    IEPKLEHY+C+VDLLSR G L +A   +E++P+ P
Sbjct: 540 LYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAP 599

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           +  +WG LL  CRN+ ++ LAE V E + EL+ ++ G YVLL+NIYA+A  WE   R+R+
Sbjct: 600 DATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLRE 659

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSG 562
            + K+ ++K  G S IEI G +  FVSG
Sbjct: 660 KIGKQGLRKNPGCSWIEIKGKVNLFVSG 687



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 109/266 (40%), Gaps = 55/266 (20%)

Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328
           +  V  ++  I  + Q G+ + A+ L    +C+    +  +    +  CA + +   GK 
Sbjct: 63  DHQVTDYNAKILHFCQLGDLENAMELI--CMCKKSELETKTYSSVLQLCAGLKSFTDGKK 120

Query: 329 IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN---------------- 372
           +H  +K + + +D  +   L+  Y  CG L E RR+F +M KKN                
Sbjct: 121 VHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGD 180

Query: 373 -----------------------------------VISYNVMIAGLGMNGFGEEALKCFA 397
                                              VIS+N MI+G   NG  E  L  + 
Sbjct: 181 FKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYK 240

Query: 398 QMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA 457
           QM   GI  D    + VL+ C++SG  + G +   S+      E ++   + L+D+ S+ 
Sbjct: 241 QMMYLGIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIKSSFERRINFSNTLLDMYSKC 299

Query: 458 GELEQALNIVESMPMKPNLALWGTLL 483
           G+L+ AL + E M  + N+  W +++
Sbjct: 300 GDLDGALRVFEKMGER-NVVSWTSMI 324


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 174/536 (32%), Positives = 296/536 (55%), Gaps = 21/536 (3%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK---GLLVDNYTYPF 117
           +++ A + F+++ +      N +I GY+++ + + AL  Y +M  K   G+  D  T+  
Sbjct: 109 DLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSS 168

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
            L AC V+  + +G EI    V  G+  D  V N LI MYSKCG +  AR VF+  + +D
Sbjct: 169 ALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRD 228

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARILF 233
           +++WN ++ G+ + G   +A E+F  M    P+ + +++  ++      + D+   R + 
Sbjct: 229 VIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLE-DLEQGRAI- 286

Query: 234 EHMPIK------DLISWNSMIDGYAKIGD-LVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
            H  ++      DL+  N +++ Y K    L  A+Q+F  M  R+V +W+I+I  Y Q+G
Sbjct: 287 -HRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYG 345

Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
             K+AL +F++M  + V P+ I++   +SACA +GA   GK +H  +   R   D++++ 
Sbjct: 346 QAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLEN 405

Query: 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK 406
           +L++MY +CGSLD+   +F ++  K+++S++ +IA    +G     L+ F ++  EG+  
Sbjct: 406 SLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAA 465

Query: 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466
           DD+  +  L ACSH G+  EG + F SM    G+ P   H+ C+VDLLSRAG LE A N+
Sbjct: 466 DDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENL 525

Query: 467 VESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA-DDCGLYVLLSNIYADAGM 525
           +  MP  P+   W +LL  C+ H +   A  V + L EL++ D+     LLSN+YA+AG 
Sbjct: 526 IHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGR 585

Query: 526 WEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
           W+    +RK   +R  +K  G S IEI+  + EFV+G+    + E +   I+   K
Sbjct: 586 WDD---VRKTRNRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSK 638



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 130/469 (27%), Positives = 239/469 (50%), Gaps = 26/469 (5%)

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           +F+ I  PN+     ++  + ++ + ++AL +Y  M  +GL  D   +   +  C     
Sbjct: 14  VFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIGVCSSSKD 73

Query: 128 LVEGTEIHGEVVKMGFL-CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
           L +G  +H  +++   L  D+ +   LI MY++C  +  AR  F+    K LV+WN ++ 
Sbjct: 74  LKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIA 133

Query: 187 GFVECGEMGKAREVFDEMPQK-------DAISWSIMIDGYRKKKGDISSARILFEHMP-- 237
           G+   G+   A +++ +M  K       DAI++S  +       GDIS  R +       
Sbjct: 134 GYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYAC-TVVGDISQGREIEARTVAS 192

Query: 238 --IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
               D I  N++I+ Y+K G L +A+++F+ +  R+V +W+ MI GYA+ G   +AL LF
Sbjct: 193 GYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELF 252

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
           + M     +P+V++ +G ++AC  +  L+ G+ IH  ++      D+++   L++MY KC
Sbjct: 253 QRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKC 312

Query: 356 -GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
             SL+EAR++F  M  ++VI++N++I      G  ++AL  F QM+ E +  +++    V
Sbjct: 313 SSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNV 372

Query: 415 LIACSHSGLATEGYRIFQSMKR-HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           L AC+  G   +G  +   +    C  +  LE  + L+++ +R G L+  + +  ++  K
Sbjct: 373 LSACAVLGAKRQGKAVHALIASGRCKADVVLE--NSLMNMYNRCGSLDDTVGVFAAIRDK 430

Query: 474 PNLALWGTLLLACRNHQNVTLA-----EVVVEGLVELKADDCGLYVLLS 517
            +L  W TL+ A   H +         E++ EGL    ADD  +   LS
Sbjct: 431 -SLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLA---ADDVTMVSTLS 475



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 183/342 (53%), Gaps = 14/342 (4%)

Query: 156 MYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE----MGKAREVFDEMPQKDAIS 211
           MY KCG +  A +VF   E  + VSW L++  F   G     +G  R +  E  + D   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 212 WSIMI----DGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
           + + I         K+G +  A IL   +   D+I   ++I  YA+  DL  A++ F+EM
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLC---QGVRPDVISVMGAISACAQVGALD 324
            ++ + +W+ +I GY+++G+ + AL ++++M+    +G++PD I+   A+ AC  VG + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
            G+ I      S    D IVQ ALI+MY KCGSL+ AR++F  +  ++VI++N MI+G  
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444
             G   +AL+ F +M       + + F+G+L AC++     +G  I + + R  G E  L
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKV-REDGYESDL 299

Query: 445 EHYSCLVDLLSR-AGELEQALNIVESMPMKPNLALWGTLLLA 485
              + L+++ ++ +  LE+A  + E M  + ++  W  L++A
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERMRTR-DVITWNILIVA 340



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 117/256 (45%), Gaps = 9/256 (3%)

Query: 45  FTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMK 104
             +  +L+++ +  + ++++A ++F ++   +    N +I  Y Q    + AL  +  M+
Sbjct: 299 LVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQ 358

Query: 105 RKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG 164
            + +  +  T   VL AC VL    +G  +H  +       DV + N L+ MY++CG + 
Sbjct: 359 LENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLD 418

Query: 165 CARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMI-------- 216
               VF     K LVSW+ ++  + + G      E F E+ Q+   +  + +        
Sbjct: 419 DTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACS 478

Query: 217 DGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSW 275
            G   K+G  +   ++ +H    D   +  M+D  ++ G L AA+ L ++MP   +  +W
Sbjct: 479 HGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAW 538

Query: 276 SIMIDGYAQHGNPKEA 291
           + ++ G   H + K A
Sbjct: 539 TSLLSGCKLHNDTKRA 554


>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
 gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
          Length = 598

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 177/524 (33%), Positives = 276/524 (52%), Gaps = 72/524 (13%)

Query: 81  NTMIRGYTQSSNPQKALSFYV-----NMKRKGLLVDNYTYPFVLKACGVLMG-LVEGTEI 134
           N +I   T + +P  A   +      +    G   D YT P  LKAC  L G L EG + 
Sbjct: 81  NALISSLTHAGDPSAAFRAFALLLVASGAGAGARPDGYTLPAALKACARLGGGLREGCQA 140

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           H    K GFL  V V N L+  Y  CG                            +CG+ 
Sbjct: 141 HAVAEKAGFLGRVPVQNALVTFYGACG----------------------------QCGD- 171

Query: 195 GKAREVFDEMPQKDAISWSIMIDGYRKKK----------------------------GDI 226
             AR+VFDEM ++D +SW+ ++  + +                              G++
Sbjct: 172 --ARKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEMDVTPNEVTLASVLVACGNL 229

Query: 227 SSARI-------LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMI 279
            +AR         F      +LI  N+++D Y K   L  A+++F+ +  R++ SW++MI
Sbjct: 230 GTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMI 289

Query: 280 DGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRIT 339
            G  Q   P EAL +F  M   GV+PD + +   +SACA +GAL+ G+W+H +++R  I 
Sbjct: 290 SGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIE 349

Query: 340 MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
            D+ V T+++DMY+KCG LD A  IF  M  KNV S+N +I G  ++G G EAL CF +M
Sbjct: 350 WDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRM 409

Query: 400 ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
              G+  +++ F+ VL AC HSGL  EG ++F+ M +   + P  +HY C+VDLL RAG 
Sbjct: 410 VASGLHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLLGRAGL 469

Query: 460 LEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519
           +++A +++++MPM+P +  W TLL AC+ H  +  ++ ++  + EL++   G+YVLLSN+
Sbjct: 470 IQEAYDVIKAMPMRPGVFTWVTLLSACQAHGRMDFSQQILMHIHELESSGNGIYVLLSNM 529

Query: 520 YADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           YA +  W    + R  M ++ ++KE G SVIE++G   EF+ G+
Sbjct: 530 YAVSDRWADVGKARGFMNEKGMQKEPGSSVIEVNGKTCEFLVGQ 573



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 15/238 (6%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            +D A R+F+ +   +      MI G  Q   P +AL  +  M+  G+  D      VL 
Sbjct: 266 KLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLS 325

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L  G  +H  + + G   DV V   ++ MY KCG +  A S+F+   +K++ S
Sbjct: 326 ACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSS 385

Query: 181 WNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           WN ++ GF   G   +A + FD M       + +++ I + G     G +   R LFE M
Sbjct: 386 WNALINGFALHGRGREALDCFDRMVASGLHPNEVTF-ITVLGACCHSGLVQEGRQLFELM 444

Query: 237 -------PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQHG 286
                  P +D   +  M+D   + G +  A  +   MP R  VF+W  ++     HG
Sbjct: 445 TKSYKLSPWED--HYGCMVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVTLLSACQAHG 500


>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
 gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
          Length = 547

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 149/359 (41%), Positives = 239/359 (66%), Gaps = 2/359 (0%)

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
           +  AI  + +I+ Y  + GD+S AR +F+ M  KD +SWN++I  +A++G +  A++LF+
Sbjct: 149 ESHAIVQNSLIEMY-TRCGDLSLARKVFDGMREKDAVSWNTLISAHARMGQMRKARELFH 207

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
            MP++ V SW+ ++ GY   G+   A+ +FR+M  +G  PD +S++  + ACAQ+GAL+L
Sbjct: 208 SMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQLGALEL 267

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
           G+WI+ +  +  +   + +  AL++MY KCG ++EA ++F+ M++K+VIS++  I GL  
Sbjct: 268 GRWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAA 327

Query: 386 NGFGEEALKCFAQMETEG-IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444
           +G   EA+K F  M+ EG +  + + F+G+L ACSH+GL  EG R F  MK   G+EP +
Sbjct: 328 HGRAREAVKLFEVMDREGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSV 387

Query: 445 EHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE 504
           EHY C+VDLL R+G +++AL+ +  MP+ P+  +WG+LL ACR+H +V  A V  E LVE
Sbjct: 388 EHYGCVVDLLGRSGRIQRALDTIGGMPIPPDGKIWGSLLSACRSHSDVDTAVVAAERLVE 447

Query: 505 LKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           L+ +D G  V+L+N+YA AG W +    RK +R R  +K  G S+IE+D  ++EFV+GE
Sbjct: 448 LEPEDVGNLVMLANVYAAAGRWGNVASTRKEIRSRSTRKTPGCSMIEVDNVVREFVAGE 506



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 132/412 (32%), Positives = 188/412 (45%), Gaps = 84/412 (20%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKR--------KGLLV-DNYT 114
            A R+F  +  PN ++HN MI+ Y Q+   + A+  YV M R         G  V D +T
Sbjct: 60  HAARVFAHVPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPDPSSSGGFSVGDRFT 119

Query: 115 YPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174
           YPF+LKACG L     G ++H  V + G      V N LI MY++CG +  AR VF+G  
Sbjct: 120 YPFLLKACGGLAASQLGRQVHAHVARSGCESHAIVQNSLIEMYTRCGDLSLARKVFDGMR 179

Query: 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFE 234
            KD VSWN ++      G+M KARE+F  MP K  +SW+ ++ GY    GD + A  +F 
Sbjct: 180 EKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGY-TAVGDFAGAVEVFR 238

Query: 235 HMPIK----------------------DLISW-----------------NSMIDGYAKIG 255
            M ++                      +L  W                 N++++ YAK G
Sbjct: 239 QMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKCG 298

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAI 314
            +  A QLF+ M E++V SWS  I G A HG  +EA+ LF  M  +G V P+ I+ +G +
Sbjct: 299 CIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGITFVGLL 358

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
           SAC+  G LD G      MK                               Y + + +V 
Sbjct: 359 SACSHAGLLDEGLRYFDRMKEE-----------------------------YGV-EPSVE 388

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC-SHSGLAT 425
            Y  ++  LG +G  + AL     M    IP D  I+  +L AC SHS + T
Sbjct: 389 HYGCVVDLLGRSGRIQRALDTIGGMP---IPPDGKIWGSLLSACRSHSDVDT 437



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            M +A  LF+ +          ++ GYT   +   A+  +  M+ +G   D+ +   VL 
Sbjct: 198 QMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEGFEPDDVSIVAVLP 257

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L  G  I+    K G L  +++ N L+ MY+KCG +  A  +F G   KD++S
Sbjct: 258 ACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEEALQLFHGMSEKDVIS 317

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQK 207
           W+  + G    G   +A ++F+ M ++
Sbjct: 318 WSTAIGGLAAHGRAREAVKLFEVMDRE 344


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 162/498 (32%), Positives = 269/498 (54%), Gaps = 39/498 (7%)

Query: 114 TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS 173
           TY  +L+ C  L  L EG ++H      GF+  V + N ++ MY KC  +  A+ +F+  
Sbjct: 91  TYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRLFDEM 150

Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY---RKKKGDISSAR 230
             +DL SWN+++ G+ + G + +AR++FD+M ++D  SW+ M  GY    + +  +   R
Sbjct: 151 AERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFR 210

Query: 231 ILFEHMPIK------------------------------------DLISWNSMIDGYAKI 254
            +  H   K                                    D + W+++ D Y K 
Sbjct: 211 AMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKC 270

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
           G +  A+ +F++  +R+V SW+ MID Y + G  +E   LF ++L  G+ P+  +  G +
Sbjct: 271 GSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVL 330

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
           +ACA   A +LGK +H +M R          + L+ MY KCG++  ARR+F  M + +++
Sbjct: 331 NACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLV 390

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434
           S+  +I+G   NG  +EAL+ F  +   G   D + F+GVL AC+H+GL  +G   F S+
Sbjct: 391 SWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSI 450

Query: 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTL 494
           K   G+    +HY+CL+DLLSR+G L++A +I++ MP++P+  LW +LL  CR H N+ L
Sbjct: 451 KEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHGNLKL 510

Query: 495 AEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDG 554
           A+   E L E++ ++   Y  L+NIYA AG+W     +RK+M  R + K+ G S IEI  
Sbjct: 511 AKRAAEALFEIEPENPATYTTLANIYATAGLWGGVAEVRKVMDARGVVKKPGLSWIEIKR 570

Query: 555 NIKEFVSGEIFDVQSEEL 572
            +  F+ G+    +S+E+
Sbjct: 571 EVHVFLVGDTSHAKSKEI 588



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 155/320 (48%), Gaps = 17/320 (5%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKR-KGLLVDNYTYPFVLK 120
           + +A +LF+Q+ + + +    M  GY +    ++AL  +  M+R +    + +T    L 
Sbjct: 171 LQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALA 230

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           A   +  L  G EIHG ++++G   D  V + L  MY KCG +G AR +F+ +  +D+VS
Sbjct: 231 ASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVS 290

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS-----------A 229
           W  ++  + + G   +   +F ++ +           G      D ++            
Sbjct: 291 WTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMT 350

Query: 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
           RI F+        + ++++  Y K G++  A+++FN MP  ++ SW+ +I GYAQ+G P 
Sbjct: 351 RIGFD----PSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPD 406

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTAL 348
           EAL  F  +L  G +PD I+ +G +SAC   G +D G ++     ++  +T        L
Sbjct: 407 EALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACL 466

Query: 349 IDMYMKCGSLDEARRIFYSM 368
           ID+  + G L EA  I   M
Sbjct: 467 IDLLSRSGRLQEAEDIIDKM 486



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 118/241 (48%), Gaps = 11/241 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++ +A  +F++    +      MI  Y +    ++  + + ++ + G+  + +T+  VL 
Sbjct: 272 SIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLN 331

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC        G ++HG + ++GF    F  + L+ MY+KCG++  AR VF G    DLVS
Sbjct: 332 ACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVS 391

Query: 181 WNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           W  ++ G+ + G+  +A + F+ +     Q D I++  ++       G +      F+ +
Sbjct: 392 WTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSAC-THAGLVDKGLEYFDSI 450

Query: 237 PIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKE 290
             K  ++     +  +ID  ++ G L  A+ + ++MP E + F W+ ++ G   HGN K 
Sbjct: 451 KEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHGNLKL 510

Query: 291 A 291
           A
Sbjct: 511 A 511


>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
 gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 548

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 148/353 (41%), Positives = 234/353 (66%)

Query: 224 GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
           G +S AR LF+ +  KD+  WN+M+ GY K+G+L +A+++FNEMP+RNV SW+ +I GYA
Sbjct: 171 GFVSDARKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYA 230

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
           Q   P EA+ LFR+M  + V PD I+++  +SACA +GAL+LG+WIH ++++  +   + 
Sbjct: 231 QTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEKHGLCRIVS 290

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           +  ALIDMY K G++  A  +F +M +K+VI+++ +IA L ++G G EA+  F +ME   
Sbjct: 291 LYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAK 350

Query: 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
           +  +++ F+ +L ACSH G+   G   F  M+    IEPK+EHY C++DLL+RAG L++A
Sbjct: 351 VRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQEA 410

Query: 464 LNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA 523
             ++  MP + N  +WG+LL A   H++  LA++ ++ L +L+  + G YVLLSN YA  
Sbjct: 411 QKLLHDMPFEANAMIWGSLLAASNTHRDAELAQLALKHLAKLEPGNSGNYVLLSNTYAAL 470

Query: 524 GMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
           G W  +  +RK+MR   +KK  G SVIEI+  + EF++G++ D Q  E+  V+
Sbjct: 471 GKWNESGTVRKLMRNAGVKKAPGGSVIEINNIVYEFLAGDMSDSQVHEIYHVL 523



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/438 (28%), Positives = 213/438 (48%), Gaps = 47/438 (10%)

Query: 7   AKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAE 66
           A F+      SLL   +   H+ QI   +    L  +   LSQ + + TS    +   A 
Sbjct: 19  AIFTSSLQFTSLLSNCRHHLHLYQIHGFMLHRALDQDNLFLSQFIDACTSLGLSSY--AF 76

Query: 67  RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
            +F+    P+  ++NT I+  +++S+P  A+  Y  ++  GL  D+Y+ P VLKA   L 
Sbjct: 77  SIFSNKTHPDLRLYNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLS 136

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
            +  G +IH + V      DV V   LI MYS CG +  AR +F+    KD+  WN ++ 
Sbjct: 137 AVEVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVA 196

Query: 187 GFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK------- 239
           G+V+ GE+  AR+VF+EMPQ++ ISW+ +I GY +       A  LF  M ++       
Sbjct: 197 GYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRP-HEAIELFRKMQLEEVEPDEI 255

Query: 240 ---------------DLISW-----------------NSMIDGYAKIGDLVAAQQLFNEM 267
                          +L  W                 N++ID YAK G++  A ++F  M
Sbjct: 256 AMLAVLSACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENM 315

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK 327
            +++V +WS +I   A HG   EA+ +F  M    VRP+ ++ +  +SAC+ VG +D+G+
Sbjct: 316 KQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGR 375

Query: 328 WIHVFMKR-SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGM 385
           +    M+   +I   +     +ID+  + G L EA+++ + M  + N + +  ++A    
Sbjct: 376 YYFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDMPFEANAMIWGSLLAASNT 435

Query: 386 N---GFGEEALKCFAQME 400
           +      + ALK  A++E
Sbjct: 436 HRDAELAQLALKHLAKLE 453


>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Glycine max]
          Length = 696

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 194/649 (29%), Positives = 317/649 (48%), Gaps = 92/649 (14%)

Query: 17  SLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPN 76
           +  Q   T     Q+ +QL        PF  ++L+        L+   A ++F+ I  P 
Sbjct: 36  AFFQRCFTLQQARQLHSQLVLTTAHRLPFLAARLIAVYARFAFLS--HARKVFDAI--PL 91

Query: 77  TYMH-----NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
             +H     N++IR        Q AL  YV M++ G L D +T P V++AC  L      
Sbjct: 92  ESLHHLLLWNSIIRANVSHGYHQHALELYVEMRKLGFLPDGFTLPLVIRACSSLGSSYLC 151

Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV-- 189
             +H   ++MGF   + VVN L+GMY K G M  AR +F+G  ++ +VSWN ++ G+   
Sbjct: 152 RIVHCHALQMGFRNHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYALN 211

Query: 190 ---------------------------------ECGEMGKAREVFDEMPQKD-------- 208
                                             CG   +  E+F  M  +         
Sbjct: 212 RDSLGASRVFKRMELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVMRTRGIEIGAEAL 271

Query: 209 -----------AISWSIMIDGYRKKKG-------------------DISSARILFEHMPI 238
                       + W   I GY  K G                    +  A  +F  +  
Sbjct: 272 AVVLSVCADMAEVDWGKEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKN 331

Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPER----------NVFSWSIMIDGYAQHGNP 288
           K+L+SWN++I  YA+ G    A   F  M +           NV SWS +I G+A  G  
Sbjct: 332 KNLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRG 391

Query: 289 KEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTAL 348
           +++L LFR+M    V  + +++   +S CA++ AL+LG+ +H +  R+ ++ +++V   L
Sbjct: 392 EKSLELFRQMQLAKVMANCVTISSVLSVCAELAALNLGRELHGYAIRNMMSDNILVGNGL 451

Query: 349 IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD 408
           I+MYMKCG   E   +F ++  +++IS+N +I G GM+G GE AL+ F +M    +  D+
Sbjct: 452 INMYMKCGDFKEGHLVFDNIEGRDLISWNSLIGGYGMHGLGENALRTFNEMIRARMKPDN 511

Query: 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468
           + F+ +L ACSH+GL   G  +F  M     IEP +EHY+C+VDLL RAG L++A +IV 
Sbjct: 512 ITFVAILSACSHAGLVAAGRNLFDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEATDIVR 571

Query: 469 SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528
           +MP++PN  +WG LL +CR ++++ + E     ++ LK+   G ++LLSNIYA  G W+ 
Sbjct: 572 NMPIEPNEYVWGALLNSCRMYKDMDIVEETASQILTLKSKITGSFMLLSNIYAANGRWDD 631

Query: 529 ALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           + R+R   R + +KK  G+S IE+   +  F +G +     E++ ++++
Sbjct: 632 SARVRVSARTKGLKKIPGQSWIEVRKKVYTFSAGNLVHFGLEDIYVILE 680


>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 512

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 158/368 (42%), Positives = 243/368 (66%), Gaps = 11/368 (2%)

Query: 208 DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
           D  + + ++D Y  K G + SAR LF+ MP++D+ +WNS+I GYA+ G + AA +LFN+M
Sbjct: 116 DMFAMTALLDMY-AKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKM 174

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ-GVRPDVISVMGAISACAQVGALDLG 326
           P RNV SW+ +I GYAQ+G   +AL +F  +  + G +P+ +S+   + AC+Q+GALD+G
Sbjct: 175 PVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIG 234

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM-TKKNVISYNVMIAGLGM 385
           K I  + + +    +  V  A+++++ +CG+++EA+++F  + +K+N+ S+N MI GL +
Sbjct: 235 KRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAV 294

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           +G   +AL+ + QM    +  DD+ F+G+L+AC+H G+  EG ++F+SM+    + PKLE
Sbjct: 295 HGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLE 354

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
           HY CLVDLL RAGEL++A N++++MPM P+  +WGTLL AC  H NV L EV  E L +L
Sbjct: 355 HYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKL 414

Query: 506 KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV----- 560
           +  + G YV+LSNIYA AG W    R+RKMM+   I K  G S IE+   I EF+     
Sbjct: 415 EPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIEVGDGIHEFIVEDRS 474

Query: 561 ---SGEIF 565
              SGEI+
Sbjct: 475 HLKSGEIY 482



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/416 (25%), Positives = 199/416 (47%), Gaps = 51/416 (12%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           QI A    N L    F + +LL     P       A  LF+QI +P+ Y++N  I+ ++ 
Sbjct: 6   QIHAYSLRNGLDHTKFLIEKLLQLPDLP------YACTLFDQIPKPSVYLYNKFIQTFSS 59

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
             +P +    Y  M  +G   + Y++ F+  AC  L  +  G  +H    K GF  D+F 
Sbjct: 60  IGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFA 119

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA 209
           +  L+ MY+K G +  AR +F+   ++D+ +WN ++ G+   G M  A E+F++MP ++ 
Sbjct: 120 MTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNV 179

Query: 210 ISWSIMIDGYRK--------------------KKGDISSARILFEHMPI----------- 238
           ISW+ +I GY +                    K  ++S A +L     +           
Sbjct: 180 ISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEA 239

Query: 239 --------KDLISWNSMIDGYAKIGDLVAAQQLFNEM-PERNVFSWSIMIDGYAQHGNPK 289
                   K+    N++++ +A+ G++  AQQ+F+E+  +RN+ SW+ MI G A HG   
Sbjct: 240 YARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCI 299

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK-RSRITMDMIVQTAL 348
           +AL L+ +ML + +RPD ++ +G + AC   G +  G+ +   M+ + ++   +     L
Sbjct: 300 DALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCL 359

Query: 349 IDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG---FGEEALKCFAQME 400
           +D+  + G L EA  +  +M    + + +  ++     +G    GE A +   ++E
Sbjct: 360 VDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLE 415


>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
 gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
          Length = 712

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 191/627 (30%), Positives = 318/627 (50%), Gaps = 51/627 (8%)

Query: 1   MKTLAAAKFSLKNPLVSLLQISKTTTHIL----QILAQLTTNDLITEPFTLSQLLMSLTS 56
           ++T     F L    +S+L +S T +  L    Q+   + ++ L+ + F +S+L+M  +S
Sbjct: 67  LRTSYNDSFDLILQSISILLVSCTKSSSLPPGKQLHGHIISSGLVEDSFLVSKLVMFYSS 126

Query: 57  PNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYP 116
              L         + +++P ++  N +I  Y +    + A+  Y  M  KG+  DN+T+P
Sbjct: 127 LEFLPEAHTLVETSNLFRPCSW--NILITSYVKHKLYEAAILAYKQMVSKGVRPDNFTFP 184

Query: 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK 176
            +LKACG    L  G E+H  +        +FV N LI MY +CG +  AR++F+    +
Sbjct: 185 SILKACGETQNLKFGLEVHKSINSWSTPWSLFVHNALISMYGRCGEVDTARNLFDNMLER 244

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARIL 232
           D VSWN ++  +   G   +A E+F+ M  K    + ++W+I+  G  +  G+ + A  L
Sbjct: 245 DAVSWNSMISCYSSRGMWREAFELFESMQSKCLEINVVTWNIIAGGCLRV-GNFTQALKL 303

Query: 233 FEHM-----PIKDL----------------------------------ISWNSMIDGYAK 253
              M      + D+                                     N+++  YA+
Sbjct: 304 LSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGFTIRHYHHMLSTVQNALVTMYAR 363

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313
             D+  A  LF    +++  +W+ M+ G    G  +EAL LFRE+L  GV PD ++    
Sbjct: 364 CKDIRHAYMLFRLNDDKSRITWNSMLSGLTHLGRVEEALCLFRELLLFGVEPDYVTFASI 423

Query: 314 ISACAQVGALDLGKWIHVFMKRSRITMD-MIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
           +  CA+V  L  G+  H ++ + R   D +++  AL+DMY + G + EA+RIFYS++KK+
Sbjct: 424 LPLCARVADLQHGREFHCYITKHRDFRDHLLLWNALVDMYARAGKVSEAKRIFYSLSKKD 483

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
            ++Y  +IAG GM G G +A++ F +M+   I  D +  + VL ACSHSGL  +   +F 
Sbjct: 484 EVTYTSLIAGYGMQGEGGKAVRLFEEMKRFQIKPDHITMIAVLSACSHSGLVNQAELLFA 543

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV 492
            M+   G+ P+LEHY+C+ DL  R G L +A  I+  MP +P  A+W TL+ AC  H N+
Sbjct: 544 EMQSVHGLSPRLEHYACMADLFGRVGLLNKAKEIITRMPYRPTSAIWATLIGACCIHGNM 603

Query: 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
            + E   E L+E++ +  G YVL++N+YA AG W     IR +MR   + K  G S +++
Sbjct: 604 DIGEWAAEKLLEMRPEHSGYYVLIANMYAAAGSWSKLAEIRTLMRDSGVAKIPGCSWVDV 663

Query: 553 DGNIKEFVSGEIFDVQSEELELVIQSF 579
                 F  G+    Q+ E +L++ S 
Sbjct: 664 GSEFISFSVGDTSSPQALESKLLLDSL 690


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 176/514 (34%), Positives = 287/514 (55%), Gaps = 34/514 (6%)

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM-----GLVEGTEIHGEVVKMGFL 144
           + +P+K  SF ++              ++LK C  L+        +  +IH   ++ G  
Sbjct: 14  THSPRKHFSFTISTS----TCPESPKSYILKKCIALLLSCASSKFKFRQIHAFSIRHG-- 67

Query: 145 CDVFVVNGLIGMY------SKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAR 198
             V + N  +G Y      S C  M  A  +F   +  ++ +WN ++RG+ E      A 
Sbjct: 68  --VPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPAL 125

Query: 199 EVFDEMP----QKDAISWSIMIDGYRK-------KKGDISSARILFEHMPIKDLISWNSM 247
           E++ +M     + D  ++  ++    K       +K    + R  FE +    +   N++
Sbjct: 126 ELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESL----VFVQNTL 181

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           +  YA  G   +A +LF  M ERN+ +W+ +I+GYA +G P EAL LFREM  +GV PD 
Sbjct: 182 VHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDG 241

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
            +++  +SACA++GAL LG+  HV+M +  +  ++    AL+D+Y KCGS+ +A ++F  
Sbjct: 242 FTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDE 301

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           M +K+V+S+  +I GL +NGFG+EAL+ F ++E +G+   ++ F+GVL ACSH G+  EG
Sbjct: 302 MEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEG 361

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
           +  F+ MK   GI PK+EHY C+VDLL RAG ++QA   +++MPM+PN  +W TLL AC 
Sbjct: 362 FDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACT 421

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
            H ++ L EV    L++L+    G YVLLSN+YA    W    ++R+ M +  +KK  G 
Sbjct: 422 IHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGH 481

Query: 548 SVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
           S++E+   + EFV G+    Q+EE+ + +    K
Sbjct: 482 SLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITK 515



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 132/429 (30%), Positives = 220/429 (51%), Gaps = 37/429 (8%)

Query: 51  LMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV 110
           L+S  SP    M  A ++F+QI  PN +  NTMIRGY +S NP  AL  Y  M    +  
Sbjct: 83  LLSFCSP----MSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEP 138

Query: 111 DNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF 170
           D +TYPF+LKA   LM + EG ++H   ++ GF   VFV N L+ MY+ CGH   A  +F
Sbjct: 139 DTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLF 198

Query: 171 EGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDI 226
           E    ++LV+WN V+ G+   G   +A  +F EM     + D  +   ++     + G +
Sbjct: 199 ELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSAC-AELGAL 257

Query: 227 SSARILFEHMPIK-----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           +  R    +M +K     +L + N+++D YAK G +  A ++F+EM E++V SW+ +I G
Sbjct: 258 ALGRRAHVYM-VKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVG 316

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
            A +G  KEAL LF+E+  +G+ P  I+ +G + AC+  G +D G     + KR +    
Sbjct: 317 LAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEG---FDYFKRMKEEYG 373

Query: 342 MIVQT----ALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG---FGEEAL 393
           ++ +      ++D+  + G + +A     +M  + N + +  ++    ++G    GE A 
Sbjct: 374 IVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVAR 433

Query: 394 KCFAQMETEGIPKD--DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
               Q+E    PK   D + L  L A       ++ +++ ++M R  G++    H   LV
Sbjct: 434 AQLLQLE----PKHSGDYVLLSNLYASEQRW--SDVHKVRRTMLRE-GVKKTPGH--SLV 484

Query: 452 DLLSRAGEL 460
           +L +R  E 
Sbjct: 485 ELRNRLHEF 493


>gi|347954504|gb|AEP33752.1| chloroplast biogenesis 19, partial [Lobularia maritima]
          Length = 496

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 158/397 (39%), Positives = 240/397 (60%), Gaps = 10/397 (2%)

Query: 191 CGEMGKAREVFDEMPQ---------KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
           CG+     E F ++           ++ +     I G   K G +S AR++F+HM  K+ 
Sbjct: 77  CGDFSSGSESFGDLLHGYACKLGLDRNHVMVGTAIIGMYSKHGRVSKARLVFDHMEGKNS 136

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
           ++WN+MIDGY + G +  A +LF+EMPER + SW+ MI+G+ + G  +EAL  FREM   
Sbjct: 137 MTWNTMIDGYMRKGKIDDAYKLFDEMPERGLISWTAMINGFVKKGFHEEALVWFREMQSS 196

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
           GV PD ++++  ++AC  +GAL  G W+H ++       ++ V  + ID++ +CG ++ A
Sbjct: 197 GVEPDYVAIIAVLAACTNLGALSFGLWVHRYLVSRDFRNNVRVNNSSIDLHCRCGCVELA 256

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
           + +F  M K+ V+S+N +I     NG  +E+L  F +M+ EG   + + F G L ACSH 
Sbjct: 257 QPVFDHMEKRTVVSWNSVIVVFSANGHADESLVYFRRMQEEGFKPNAVTFTGALTACSHV 316

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           GL  EG R FQ+MK+   I P++EHY CLVDL SRAG LE ALN+V+SMPMKPN  + G+
Sbjct: 317 GLVEEGLRYFQTMKKEYRISPRIEHYGCLVDLYSRAGRLEDALNVVQSMPMKPNEVVIGS 376

Query: 482 LLLACRNHQNVT-LAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540
           LL ACR H N T LAE +++ L +        YV+LSN+YA  G WE A ++R+ M+   
Sbjct: 377 LLAACRTHGNNTVLAERLMKHLSDTNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLG 436

Query: 541 IKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           +KK+ G S IEID     F++G+   V++  +  V++
Sbjct: 437 LKKQPGFSSIEIDDCTHVFMAGDSAHVETGYIREVLE 473



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 167/337 (49%), Gaps = 45/337 (13%)

Query: 95  KALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE--GTEIHGEVVKMGFLCD-VFVVN 151
           +A   + +M+  G+  ++ T+  +L  CG      E  G  +HG   K+G   + V V  
Sbjct: 50  EAAKEFSDMRFAGVEPNHITFIALLSGCGDFSSGSESFGDLLHGYACKLGLDRNHVMVGT 109

Query: 152 GLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAIS 211
            +IGMYSK G +  AR VF+  E K+ ++WN ++ G++  G++  A ++FDEMP++  IS
Sbjct: 110 AIIGMYSKHGRVSKARLVFDHMEGKNSMTWNTMIDGYMRKGKIDDAYKLFDEMPERGLIS 169

Query: 212 WSIMIDGYRKKKGDISSARILFEHMPIK----DLIS------------------W----- 244
           W+ MI+G+  KKG    A + F  M       D ++                  W     
Sbjct: 170 WTAMINGF-VKKGFHEEALVWFREMQSSGVEPDYVAIIAVLAACTNLGALSFGLWVHRYL 228

Query: 245 ------------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
                       NS ID + + G +  AQ +F+ M +R V SW+ +I  ++ +G+  E+L
Sbjct: 229 VSRDFRNNVRVNNSSIDLHCRCGCVELAQPVFDHMEKRTVVSWNSVIVVFSANGHADESL 288

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDM 351
             FR M  +G +P+ ++  GA++AC+ VG ++ G ++     K  RI+  +     L+D+
Sbjct: 289 VYFRRMQEEGFKPNAVTFTGALTACSHVGLVEEGLRYFQTMKKEYRISPRIEHYGCLVDL 348

Query: 352 YMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG 387
           Y + G L++A  +  SM  K N +    ++A    +G
Sbjct: 349 YSRAGRLEDALNVVQSMPMKPNEVVIGSLLAACRTHG 385


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 180/520 (34%), Positives = 297/520 (57%), Gaps = 16/520 (3%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            A  LF+++   +    N MI GY QS N ++AL+    ++     +D+ T   +L AC 
Sbjct: 203 NARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRA----MDSVTVVSLLSACT 258

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
                  G  IH   +K G   ++FV N LI +Y++ G +   + VF+   ++DL+SWN 
Sbjct: 259 EAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNS 318

Query: 184 VLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSAR-----ILFE 234
           +++ +    +  +A  +F EM     Q D ++  I +     + G+I + R      L +
Sbjct: 319 IIKAYELNEQPLRAILLFQEMRLSRIQPDCLTL-ISLASILSQLGEIRACRSVQGFTLRK 377

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
              ++D+   N+++  YAK+G + +A+ +FN +P ++V SW+ +I GYAQ+G   EA+ +
Sbjct: 378 GWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEM 437

Query: 295 FREMLCQG--VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
           +  M  +G  +  +  + +  + AC+Q GAL  G  +H  + ++ + +D+ V T+L DMY
Sbjct: 438 YNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMY 497

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCG LD+A  +FY + + N + +N +IA  G +G GE+A+  F +M  EG+  D + F+
Sbjct: 498 GKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFV 557

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            +L ACSHSGL  EG   F+ M+   GI P L+HY C+VDL  RAG+LE ALN ++SMP+
Sbjct: 558 TLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPL 617

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           +P+ ++WG LL ACR H NV L ++  E L E++ +  G +VLLSN+YA AG WE    I
Sbjct: 618 QPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEI 677

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           R +   + ++K  G S +E+D  ++ F +G       EE+
Sbjct: 678 RSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEM 717



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 126/435 (28%), Positives = 227/435 (52%), Gaps = 15/435 (3%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKAL-SFYVNMKRKGLLVDNYTYPFVL 119
           N+  A   F+ I+  + Y  N MI GY ++    + +  F + M   GL  D  T+P VL
Sbjct: 101 NVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVL 160

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           KAC     + +G +IH   +K GF+ DV+V   LI +Y + G +  AR +F+    +D+ 
Sbjct: 161 KAC---RNVTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMG 217

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARIL----FEH 235
           SWN ++ G+ + G   +A  + D +   D+++   ++     + GD +    +     +H
Sbjct: 218 SWNAMISGYCQSGNAKEALTLSDGLRAMDSVTVVSLLSAC-TEAGDFNRGVTIHSYSIKH 276

Query: 236 MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
               +L   N +ID YA+ G L   Q++F+ M  R++ SW+ +I  Y  +  P  A+ LF
Sbjct: 277 GLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLF 336

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF-MKRSRITMDMIVQTALIDMYMK 354
           +EM    ++PD ++++   S  +Q+G +   + +  F +++     D+ +  A++ MY K
Sbjct: 337 QEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAK 396

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG--IPKDDLIFL 412
            G +D AR +F  +  K+VIS+N +I+G   NGF  EA++ +  ME EG  I  +   ++
Sbjct: 397 LGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWV 456

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            VL ACS +G   +G ++   + ++ G+   +   + L D+  + G L+ AL++   +P 
Sbjct: 457 SVLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVGTSLADMYGKCGRLDDALSLFYQIP- 514

Query: 473 KPNLALWGTLLLACR 487
           + N   W T L+AC 
Sbjct: 515 RVNSVPWNT-LIACH 528



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 138/281 (49%), Gaps = 13/281 (4%)

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR-EMLCQGVRP 305
           +++ Y  +G++  A+  F+ +  R+V++W++MI GY + G   E +  F   ML  G++P
Sbjct: 92  LVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQP 151

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D  +    + AC  V     G  IH    +     D+ V  +LI +Y + G++  AR +F
Sbjct: 152 DYRTFPSVLKACRNVTD---GNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILF 208

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGI-PKDDLIFLGVLIACSHSGLA 424
             M  +++ S+N MI+G   +G  +EAL       ++G+   D +  + +L AC+ +G  
Sbjct: 209 DEMPTRDMGSWNAMISGYCQSGNAKEALTL-----SDGLRAMDSVTVVSLLSACTEAGDF 263

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
             G  I     +H G+E +L   + L+DL +  G L+    + + M ++ +L  W +++ 
Sbjct: 264 NRGVTIHSYSIKH-GLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVR-DLISWNSIIK 321

Query: 485 ACR-NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524
           A   N Q +    +  E  +     DC   + L++I +  G
Sbjct: 322 AYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLG 362



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 110/254 (43%), Gaps = 32/254 (12%)

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
           L   K +H  +  S    ++ +   L+++Y   G++  AR  F  +  ++V ++N+MI+G
Sbjct: 67  LQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISG 126

Query: 383 LGMNGFGEEALKCFAQ-METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC--- 438
            G  G+  E ++CF+  M + G+  D   F  VL AC +    T+G +I      HC   
Sbjct: 127 YGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRN---VTDGNKI------HCLAL 177

Query: 439 --GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAE 496
             G    +   + L+ L  R G +  A  + + MP + ++  W  ++       N   A 
Sbjct: 178 KFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTR-DMGSWNAMISGYCQSGNAKEAL 236

Query: 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNI 556
            + +G   L+A D    V L +   +AG +   + I     K  ++ E            
Sbjct: 237 TLSDG---LRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESEL----------- 282

Query: 557 KEFVSGEIFDVQSE 570
             FVS ++ D+ +E
Sbjct: 283 --FVSNKLIDLYAE 294


>gi|414879049|tpg|DAA56180.1| TPA: hypothetical protein ZEAMMB73_301223 [Zea mays]
          Length = 534

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 164/460 (35%), Positives = 262/460 (56%), Gaps = 2/460 (0%)

Query: 93  PQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV-VN 151
           P+ AL+  + M R  +  D++T PF L A   L  L  G  +H   +++  L       N
Sbjct: 63  PRAALALLLIMPRLPVRPDHFTLPFALNAAASLRLLPLGASLHAVALRLALLPLRLPVAN 122

Query: 152 GLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAIS 211
            L+ +Y+KC     A +        D VS+N +L        +  A  +F  MP +  +S
Sbjct: 123 ALVDLYAKCEEFPAAHAALADIPAPDAVSFNSLLCAHARNASVRPAESLFAAMPTRTQVS 182

Query: 212 WSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271
           W+ M+  Y    GD+++A  +F+ MP +D  S   +I GY K G +  A++LF++MP ++
Sbjct: 183 WNAMVVLY-VSAGDLAAACRVFDEMPTRDTASSMVLIVGYCKCGLVQNARELFDKMPTKD 241

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV 331
           + + + MI+GYAQ G PK AL LFR++   G+ PD  +++G ISA +Q+G+ +L  W+  
Sbjct: 242 LVARTAMINGYAQTGRPKVALALFRDLEAAGIEPDGATMVGVISAVSQIGSTELAGWVGA 301

Query: 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391
           ++ R +I  +  V TAL+DM+ KCG++++A   F  + + +   Y  +I+GL  +G    
Sbjct: 302 YVDRKKIERNEKVLTALVDMHAKCGNIEQALSAFREIPRPDAYPYTALISGLATHGHENL 361

Query: 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
           AL  F +M  E I    + F+GVL ACSH+G   +G   +++M +  GIE   +HY+C++
Sbjct: 362 ALSVFERMRAEDIKPHPITFVGVLTACSHAGNVEKGLEYWEAMVQDYGIERHADHYACVI 421

Query: 452 DLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511
           D+L RAG +E+A  +V++MPM P+    G LL AC+ + NV +AEVV   L EL+  + G
Sbjct: 422 DMLGRAGRIEEAFEMVQTMPMGPHPGALGALLSACKTYDNVEIAEVVANKLFELEPWNTG 481

Query: 512 LYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
            Y+LLSNIYA   +WE A R+R +MR +   K  G +  E
Sbjct: 482 NYILLSNIYAGKELWEEAERVRSLMRTKLPFKSPGSTWFE 521



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 103/266 (38%), Gaps = 46/266 (17%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +  A  LF+++   +      MI GY Q+  P+ AL+ + +++  G+  D  T   V+ A
Sbjct: 227 VQNARELFDKMPTKDLVARTAMINGYAQTGRPKVALALFRDLEAAGIEPDGATMVGVISA 286

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDV-------FVVNGLIGMYSKCGHMGCARSVFEGSE 174
               +  +  TE+ G V   G   D         V+  L+ M++KCG++  A S F    
Sbjct: 287 ----VSQIGSTELAGWV---GAYVDRKKIERNEKVLTALVDMHAKCGNIEQALSAFREIP 339

Query: 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR---KKKGDISSARI 231
             D   +  ++ G    G    A  VF+ M  +D     I   G        G++     
Sbjct: 340 RPDAYPYTALISGLATHGHENLALSVFERMRAEDIKPHPITFVGVLTACSHAGNVE---- 395

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
                  K L  W +M+  Y                 ER+   ++ +ID   + G  +EA
Sbjct: 396 -------KGLEYWEAMVQDYGI---------------ERHADHYACVIDMLGRAGRIEEA 433

Query: 292 LYLFREMLCQGVRPDVISVMGAISAC 317
             + + M   G  P  +  +  +SAC
Sbjct: 434 FEMVQTM-PMGPHPGALGAL--LSAC 456


>gi|242063912|ref|XP_002453245.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
 gi|241933076|gb|EES06221.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
          Length = 603

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 171/504 (33%), Positives = 273/504 (54%), Gaps = 17/504 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D+A  LF+ +   N      MI GY +    ++A   +          D    P     
Sbjct: 102 VDRARDLFDVMPARNDVSWLMMISGYMKRKRVREAREIF----------DRAPSPTTSVC 151

Query: 122 CGVLMGLVEGTEIHGEVVKMGFL--CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
             +L G  E   +       G +   D+   N +I  Y++ G M  A+ +F+    KD V
Sbjct: 152 NALLSGYAEHGYLKDAEDLFGRMQTPDLVSWNAMITGYTRAGMMQVAQRLFDEMPEKDTV 211

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239
           SW  ++RG+++ G++  A +VF +MP +D ++W+ M+ G+   +  +  A  LF  MP +
Sbjct: 212 SWTAIVRGYLQNGDVDAAWKVFQDMPDRDVLAWNTMMSGFVVSE-RLDDALRLFADMPDR 270

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           DL+SWN+++ GY + GD+  A   F +MPE++  SW+ +I GY   G    AL L  EM 
Sbjct: 271 DLVSWNTILQGYVQQGDMDGATAWFRKMPEKDEASWNTLISGYKDEG----ALNLLSEMT 326

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
             G RPD  +   AIS C+ + AL  G+ +HV   ++    D +V ++LI MY KCG + 
Sbjct: 327 QGGYRPDQATWSVAISICSSLAALGCGRMVHVCTIKTGFERDALVMSSLISMYSKCGLIT 386

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           EA ++F  + +++ +++N MIA    +G   EAL  F +M  +G   D   FL VL AC+
Sbjct: 387 EASQVFDLIVQRDTVTWNAMIATYAYHGLAAEALTLFDRMTKDGFSPDHATFLSVLSACA 446

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           H G   EG   F+SM++   + P+ +HYSC+VDLL R+G + QA N    +P    +  W
Sbjct: 447 HKGYLYEGCHHFRSMQQDWNLIPRSDHYSCMVDLLGRSGFVHQAYNFTRRIPSDLQINAW 506

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
            TL  +C  H ++ L E+V + +++ +  D G+Y LLSNIYA  GMW  A  +R +M+++
Sbjct: 507 ETLFSSCNAHGDIQLGELVAKNVLQSRPSDGGMYTLLSNIYAAKGMWSSAASVRGLMKEQ 566

Query: 540 KIKKETGRSVIEIDGNIKEFVSGE 563
            +KKETG S IE+ G++  F S +
Sbjct: 567 GLKKETGCSWIELKGDVVSFSSND 590



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 171/343 (49%), Gaps = 19/343 (5%)

Query: 159 KCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDG 218
           + G +G AR VF+    +++ +WN ++ G V  G +  AR VFD MP ++++SW+ ++ G
Sbjct: 5   RAGRVGAARRVFDEMSERNVFTWNCMISGLVRNGMLTDARGVFDTMPFRNSVSWAALLTG 64

Query: 219 YRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM 278
           Y  + G ++ AR LF+ MP + ++SWN+MI GY   G +  A+ LF+ MP RN  SW +M
Sbjct: 65  Y-ARCGRVAEARELFDRMPDRSVVSWNAMISGYLWNGMVDRARDLFDVMPARNDVSWLMM 123

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338
           I GY +    +EA    RE+  +   P        +S  A+ G L   + +   M+    
Sbjct: 124 ISGYMKRKRVREA----REIFDRAPSPTTSVCNALLSGYAEHGYLKDAEDLFGRMQ---- 175

Query: 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
           T D++   A+I  Y + G +  A+R+F  M +K+ +S+  ++ G   NG  + A K F  
Sbjct: 176 TPDLVSWNAMITGYTRAGMMQVAQRLFDEMPEKDTVSWTAIVRGYLQNGDVDAAWKVFQD 235

Query: 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458
           M    +   + +  G ++    S    +  R+F  M      +  L  ++ ++    + G
Sbjct: 236 MPDRDVLAWNTMMSGFVV----SERLDDALRLFADMP-----DRDLVSWNTILQGYVQQG 286

Query: 459 ELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEG 501
           +++ A      MP K + A W TL+   ++   + L   + +G
Sbjct: 287 DMDGATAWFRKMPEK-DEASWNTLISGYKDEGALNLLSEMTQG 328



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 169/344 (49%), Gaps = 25/344 (7%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           +VF  N +I    + G +  AR VF+    ++ VSW  +L G+  CG + +ARE+FD MP
Sbjct: 23  NVFTWNCMISGLVRNGMLTDARGVFDTMPFRNSVSWAALLTGYARCGRVAEARELFDRMP 82

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
            +  +SW+ MI GY    G +  AR LF+ MP ++ +SW  MI GY K   +  A+++F+
Sbjct: 83  DRSVVSWNAMISGY-LWNGMVDRARDLFDVMPARNDVSWLMMISGYMKRKRVREAREIFD 141

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
             P       + ++ GYA+HG  K+A  LF  M      PD++S    I+   + G + +
Sbjct: 142 RAPSPTTSVCNALLSGYAEHGYLKDAEDLFGRMQT----PDLVSWNAMITGYTRAGMMQV 197

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
            + +   M       D +  TA++  Y++ G +D A ++F  M  ++V+++N M++G  +
Sbjct: 198 AQRLFDEMPEK----DTVSWTAIVRGYLQNGDVDAAWKVFQDMPDRDVLAWNTMMSGFVV 253

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           +   ++AL+ FA M    +   + I  G +      G AT  +R            P+ +
Sbjct: 254 SERLDDALRLFADMPDRDLVSWNTILQGYVQQGDMDG-ATAWFRKM----------PEKD 302

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPM---KPNLALWGTLLLAC 486
             S   + L    + E ALN++  M     +P+ A W   +  C
Sbjct: 303 EASW--NTLISGYKDEGALNLLSEMTQGGYRPDQATWSVAISIC 344



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/455 (25%), Positives = 197/455 (43%), Gaps = 83/455 (18%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A R+F+++ + N +  N MI G                + R G+L               
Sbjct: 12  ARRVFDEMSERNVFTWNCMISG----------------LVRNGML--------------- 40

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
                  T+  G    M F   V     L G Y++CG +  AR +F+    + +VSWN +
Sbjct: 41  -------TDARGVFDTMPFRNSVSWAALLTG-YARCGRVAEARELFDRMPDRSVVSWNAM 92

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK--------------------- 223
           + G++  G + +AR++FD MP ++ +SW +MI GY K+K                     
Sbjct: 93  ISGYLWNGMVDRARDLFDVMPARNDVSWLMMISGYMKRKRVREAREIFDRAPSPTTSVCN 152

Query: 224 ---------GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
                    G +  A  LF  M   DL+SWN+MI GY + G +  AQ+LF+EMPE++  S
Sbjct: 153 ALLSGYAEHGYLKDAEDLFGRMQTPDLVSWNAMITGYTRAGMMQVAQRLFDEMPEKDTVS 212

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W+ ++ GY Q+G+   A  +F++M  +    DV++    +S       LD    +   M 
Sbjct: 213 WTAIVRGYLQNGDVDAAWKVFQDMPDR----DVLAWNTMMSGFVVSERLDDALRLFADMP 268

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
                 D++    ++  Y++ G +D A   F  M +K+  S+N +I+G    G    AL 
Sbjct: 269 ----DRDLVSWNTILQGYVQQGDMDGATAWFRKMPEKDEASWNTLISGYKDEG----ALN 320

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
             ++M T+G  + D     V I+   S  A    R+        G E      S L+ + 
Sbjct: 321 LLSEM-TQGGYRPDQATWSVAISICSSLAALGCGRMVHVCTIKTGFERDALVMSSLISMY 379

Query: 455 SRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
           S+ G + +A  + + + ++ +   W  ++     H
Sbjct: 380 SKCGLITEASQVFD-LIVQRDTVTWNAMIATYAYH 413



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           + + G +  ARR+F  M+++NV ++N MI+GL  NG   +A   F  M      ++ + +
Sbjct: 3   HFRAGRVGAARRVFDEMSERNVFTWNCMISGLVRNGMLTDARGVFDTMPF----RNSVSW 58

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
             +L   +  G   E   +F  M      +  +  ++ ++      G +++A ++ + MP
Sbjct: 59  AALLTGYARCGRVAEARELFDRMP-----DRSVVSWNAMISGYLWNGMVDRARDLFDVMP 113

Query: 472 MKPNLA 477
            + +++
Sbjct: 114 ARNDVS 119


>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 589

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 154/355 (43%), Positives = 238/355 (67%), Gaps = 3/355 (0%)

Query: 208 DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
           D  + + ++D Y  K G + SAR LF+ MP++D+ +WNS+I GYA+ G + AA +LFN+M
Sbjct: 116 DMFAMTALLDMY-AKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKM 174

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ-GVRPDVISVMGAISACAQVGALDLG 326
           P RNV SW+ +I GYAQ+G   +AL +F  +  + G +P+ +S+   + AC+Q+GALD+G
Sbjct: 175 PVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIG 234

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM-TKKNVISYNVMIAGLGM 385
           K I  + + +    +  V  A+++++ +CG+++EA+++F  + +K+N+ S+N MI GL +
Sbjct: 235 KRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAV 294

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           +G   +AL+ + QM    +  DD+ F+G+L+AC+H G+  EG ++F+SM+    + PKLE
Sbjct: 295 HGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLE 354

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
           HY CLVDLL RAGEL++A N++++MPM P+  +WGTLL AC  H NV L EV  E L +L
Sbjct: 355 HYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKL 414

Query: 506 KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
           +  + G YV+LSNIYA AG W    R+RKMM+   I K  G S IE+   I EF+
Sbjct: 415 EPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIEVGDGIHEFI 469



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 200/416 (48%), Gaps = 51/416 (12%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           QI A    N L    F + +LL         ++  A  LF+QI +P+ Y++N  I+ ++ 
Sbjct: 6   QIHAYSLRNGLDHTKFLIEKLL------QLPDLPYACTLFDQIPKPSVYLYNKFIQTFSS 59

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
             +P +    Y  M  +G   + Y++ F+  AC  L  +  G  +H    K GF  D+F 
Sbjct: 60  IGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFA 119

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA 209
           +  L+ MY+K G +  AR +F+   ++D+ +WN ++ G+   G M  A E+F++MP ++ 
Sbjct: 120 MTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNV 179

Query: 210 ISWSIMIDGYRK--------------------KKGDISSARILFEHMPI----------- 238
           ISW+ +I GY +                    K  ++S A +L     +           
Sbjct: 180 ISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEA 239

Query: 239 --------KDLISWNSMIDGYAKIGDLVAAQQLFNEM-PERNVFSWSIMIDGYAQHGNPK 289
                   K+    N++++ +A+ G++  AQQ+F+E+  +RN+ SW+ MI G A HG   
Sbjct: 240 YARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCI 299

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK-RSRITMDMIVQTAL 348
           +AL L+ +ML + +RPD ++ +G + AC   G +  G+ +   M+ + ++   +     L
Sbjct: 300 DALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCL 359

Query: 349 IDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG---FGEEALKCFAQME 400
           +D+  + G L EA  +  +M    + + +  ++     +G    GE A +   ++E
Sbjct: 360 VDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLE 415


>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 553

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 179/497 (36%), Positives = 279/497 (56%), Gaps = 55/497 (11%)

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           +L+ C  +  L    +IH +++  GF    F++  L+  Y   G++  A  VFE  E   
Sbjct: 24  LLQTCDTIKKL---KQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPS 80

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQKDA----ISWSIMIDGYRK----KKGD---- 225
              WN ++RG  +     K  E+++ M + +A     ++S +I G  +    ++G+    
Sbjct: 81  TTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHG 140

Query: 226 -----------------------------ISSARILFEHMPIKDLISWNSMIDGYAKIGD 256
                                        +  AR +F+ +  ++++SWNS++ GY + GD
Sbjct: 141 RVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGD 200

Query: 257 LVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISA 316
           +  A+++F+EMPERNV SW+ MI G AQ G  K+AL+LF EM   GV+ D ++++ A+SA
Sbjct: 201 VDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSA 260

Query: 317 CAQVGALDLGKWIHVFMKR----SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
           CA++G L LG WIH ++          + + +  +LI MY  CG +D+A ++F  M +++
Sbjct: 261 CAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRS 320

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQME----TEGIPKDDLIFLGVLIACSHSGLATEGY 428
            IS+  MI G    G  EEAL  F  M+     EG P D + F+GVL ACSH+G   +G 
Sbjct: 321 TISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRP-DGITFIGVLCACSHAGFVDQGR 379

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
             F+ M +  GI P++EHY C+VDLLSRAG L++A  ++ESMPMKPN A+WG LL  CR 
Sbjct: 380 HFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRI 439

Query: 489 HQNVTLAEVVVEGL-VELKADDCGLY-VLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           H+N  LA  V + L +ELK D    Y VLLSN+YA A  W+    +R+ M +  ++K  G
Sbjct: 440 HKNAELASHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAG 499

Query: 547 RSVIEIDGNIKEFVSGE 563
           RS ++I+G + +FV+G+
Sbjct: 500 RSWVQINGVVHDFVAGD 516



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 141/460 (30%), Positives = 219/460 (47%), Gaps = 60/460 (13%)

Query: 10  SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERL 68
           +L+    SLLQ   T   + QI  Q+  N    + F L +LL   +TS N LN   A ++
Sbjct: 16  ALQQHFFSLLQTCDTIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLN---AHKV 72

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           F +I  P+T + N MIRG++QS  P K +  Y  M       + +TY F++  C     L
Sbjct: 73  FERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLL 132

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGC---ARSVFEGSEIKDLVSWNLVL 185
            EG ++HG VV  G+  +VFV   L+ +Y+  G       AR VF+    +++VSWN +L
Sbjct: 133 REGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLL 192

Query: 186 RGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM--------- 236
            G+V CG++  AR +FDEMP+++ +SW+ MI G   + G    A  LF  M         
Sbjct: 193 AGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGC-AQIGRCKQALHLFHEMRRAGVKLDQ 251

Query: 237 -----------PIKDLI--SW---------------------NSMIDGYAKIGDLVAAQQ 262
                       + DL   +W                     NS+I  YA  G +  A +
Sbjct: 252 VALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYK 311

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV---RPDVISVMGAISACAQ 319
           +F  M +R+  SW+ MI G+A+ G+ +EAL +F+ M   G    RPD I+ +G + AC+ 
Sbjct: 312 VFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSH 371

Query: 320 VGALDLGKWIHVF---MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVIS 375
            G +D G+  H F    K+  I   +     ++D+  + G LDEA R+  SM  K N   
Sbjct: 372 AGFVDQGR--HFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAV 429

Query: 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
           +  ++ G  ++   E A     ++  E  P     +L +L
Sbjct: 430 WGALLGGCRIHKNAELASHVAQKLALELKPDQAAGYLVLL 469


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 180/520 (34%), Positives = 288/520 (55%), Gaps = 9/520 (1%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A  +FN   + N  + N M+  + Q ++  K+   +  M+  G+  + +TYP +L+
Sbjct: 294 DVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILR 353

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C     +  G +IH   VK GF  D++V   LI MYSK G +  AR V E  + KD+VS
Sbjct: 354 TCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVS 413

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQ----KDAISWSIMIDGYRK----KKGDISSARIL 232
           W  ++ G+V+      A   F EM +     D I  +  I G       ++G    ARI 
Sbjct: 414 WTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIY 473

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
                  D+  WN++++ YA+ G +  A   F EM  ++  + + ++ G+AQ G  +EAL
Sbjct: 474 VSGYS-GDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEAL 532

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            +F  M   GV+ +V + + A+SA A +  +  GK IH  + ++  + +  V  ALI +Y
Sbjct: 533 KVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLY 592

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCGS ++A+  F  M+++N +S+N +I     +G G EAL  F QM+ EGI  +D+ F+
Sbjct: 593 GKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFI 652

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
           GVL ACSH GL  EG   F+SM    GI P+ +HY+C++D+  RAG+L++A   +E MP+
Sbjct: 653 GVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPI 712

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
             +  +W TLL AC+ H+N+ + E   + L+EL+  D   YVLLSN YA    W +  ++
Sbjct: 713 AADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQV 772

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           RKMMR R ++KE GRS IE+   +  F  G+     +E++
Sbjct: 773 RKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQI 812



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 149/555 (26%), Positives = 257/555 (46%), Gaps = 30/555 (5%)

Query: 47  LSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK 106
           +  LL+ L S N L +  A R+F ++   +      M+ GY Q+   ++AL  Y  M R 
Sbjct: 79  VGNLLIDLYSKNGLVLP-ARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRA 137

Query: 107 GLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCA 166
           G++   Y    VL +C       +G  IH +  K GF  ++FV N +I +Y +CG    A
Sbjct: 138 GVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLA 197

Query: 167 RSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKK 222
             VF     +D V++N ++ G  +CG    A E+F+EM       D ++ S ++      
Sbjct: 198 ERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAAC-AS 256

Query: 223 KGDISSA----RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM 278
            GD+         LF+     D I   S++D Y K GD+  A  +FN     NV  W++M
Sbjct: 257 LGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLM 316

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338
           +  + Q  +  ++  LF +M   G+RP+  +    +  C     +DLG+ IH    ++  
Sbjct: 317 LVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGF 376

Query: 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
             DM V   LIDMY K G L++ARR+   + +K+V+S+  MIAG   +   ++AL  F +
Sbjct: 377 ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458
           M+  GI  D++     +  C+      +G +I   +    G    +  ++ LV+L +R G
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYV-SGYSGDVSIWNALVNLYARCG 495

Query: 459 ELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG----LYV 514
            + +A +  E M +K  +   G  L++        L E  ++  V ++ D  G    ++ 
Sbjct: 496 RIREAFSSFEEMELKDGIT--GNGLVS--GFAQSGLHEEALK--VFMRMDQSGVKHNVFT 549

Query: 515 LLSNIYADAGMWEHALRIRKMMRKRKIK------KETGRSVIEIDGNIKEFVSGEI-FDV 567
            +S + A A + E  ++  K +  R IK       E G ++I + G    F   ++ F  
Sbjct: 550 FVSALSASANLAE--IKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSE 607

Query: 568 QSEELELVIQSFVKT 582
            SE  E+   + + +
Sbjct: 608 MSERNEVSWNTIITS 622



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 209/415 (50%), Gaps = 14/415 (3%)

Query: 86  GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC---GVLMGLVEGTEIHGEVVKMG 142
           G+    +P K LS + +  R+   +    +   L+AC   G    +V   EIH + V  G
Sbjct: 15  GFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVV--PEIHAKAVTRG 72

Query: 143 FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFD 202
                 V N LI +YSK G +  AR VFE    +D VSW  +L G+ + G   +A  ++ 
Sbjct: 73  LGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYR 132

Query: 203 EMPQKDAISWSIMIDGYRK---KKGDISSARIL----FEHMPIKDLISWNSMIDGYAKIG 255
           +M +   +    ++        K    +  R++    ++H    ++   N++I  Y + G
Sbjct: 133 QMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCG 192

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
               A+++F +MP R+  +++ +I G+AQ G+ + AL +F EM   G+ PD +++   ++
Sbjct: 193 SFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLA 252

Query: 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS 375
           ACA +G L  G  +H ++ ++ I+ D I++ +L+D+Y+KCG ++ A  IF S  + NV+ 
Sbjct: 253 ACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVL 312

Query: 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMK 435
           +N+M+   G      ++ + F QM+  GI  +   +  +L  C+ +     G +I  S+ 
Sbjct: 313 WNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQI-HSLS 371

Query: 436 RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
              G E  +     L+D+ S+ G LE+A  ++E +  K ++  W +++     H+
Sbjct: 372 VKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEK-DVVSWTSMIAGYVQHE 425


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 167/506 (33%), Positives = 292/506 (57%), Gaps = 14/506 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D+A ++F+ + + N      +++GY  +     A S +  M  K  +  ++T       
Sbjct: 95  IDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKV--SWTV------ 146

Query: 122 CGVLMGLVEGTEIHG--EVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
             +L+G ++   I    ++ +M    D      +I    K G +  AR +F+    + ++
Sbjct: 147 --MLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVI 204

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239
           +W  ++ G+ +   +  AR++FD MP+K  +SW+ M+ GY  + G I  A  LFE MP+K
Sbjct: 205 TWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGY-VQNGRIEDAEELFEVMPVK 263

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
            +I+ N+MI G  + G++  A+++F+ M ERN  SW  +I  + ++G   EAL LF  M 
Sbjct: 264 PVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQ 323

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
            QGVRP   +++  +S CA + +L  GK +H  + R +  +D+ V + L+ MY+KCG L 
Sbjct: 324 KQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELV 383

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIAC 418
           +++ IF     K++I +N +I+G   +G GEEALK F +M   G  K +++ F+  L AC
Sbjct: 384 KSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSAC 443

Query: 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
           S++G+  EG +I++SM+   G++P   HY+C+VD+L RAG   +A+ +++SM ++P+ A+
Sbjct: 444 SYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAV 503

Query: 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
           WG+LL ACR H  + +AE   + L+E++ ++ G Y+LLSN+YA  G W     +RK+M+ 
Sbjct: 504 WGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKT 563

Query: 539 RKIKKETGRSVIEIDGNIKEFVSGEI 564
           R ++K  G S  E++  +  F  G I
Sbjct: 564 RLVRKSPGCSWTEVENKVHAFTRGGI 589



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 196/392 (50%), Gaps = 21/392 (5%)

Query: 151 NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAI 210
           NGL+  Y K G +  AR VF+    +++VSW  +++G+V  G++  A  +F +MP+K+ +
Sbjct: 83  NGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKV 142

Query: 211 SWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER 270
           SW++M+ G+  + G I  A  L+E +P KD I+  SMI G  K G +  A+++F+EM ER
Sbjct: 143 SWTVMLIGFL-QDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSER 201

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           +V +W+ M+ GY Q+    +A  +F  M  +        +MG +    Q G ++  + + 
Sbjct: 202 SVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYV----QNGRIEDAEELF 257

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
             M        +I   A+I    + G + +ARR+F SM ++N  S+  +I     NGF  
Sbjct: 258 EVMP----VKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFEL 313

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
           EAL  F  M+ +G+       + +L  C+       G ++   + R C  +  +   S L
Sbjct: 314 EALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVR-CQFDVDVYVASVL 372

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL----- 505
           + +  + GEL ++  I +  P K ++ +W +++    +H    L E  ++   E+     
Sbjct: 373 MTMYIKCGELVKSKLIFDRFPSK-DIIMWNSIISGYASH---GLGEEALKVFCEMPLSGS 428

Query: 506 -KADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
            K ++      LS   + AGM E  L+I + M
Sbjct: 429 TKPNEVTFVATLSAC-SYAGMVEEGLKIYESM 459



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 157/302 (51%), Gaps = 19/302 (6%)

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
           N+ +      G++ +AR++FD    K   SW+ M+ GY         AR LF+ MP +++
Sbjct: 21  NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMP-RDARKLFDEMPDRNI 79

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
           ISWN ++ GY K G++  A+++F+ MPERNV SW+ ++ GY  +G    A  LF +M  +
Sbjct: 80  ISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEK 139

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
                 + ++G +    Q G +D    ++  +       D I +T++I    K G +DEA
Sbjct: 140 NKVSWTVMLIGFL----QDGRIDDACKLYEMIPDK----DNIARTSMIHGLCKEGRVDEA 191

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
           R IF  M++++VI++  M+ G G N   ++A K F  M      K ++ +  +L+    +
Sbjct: 192 REIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPE----KTEVSWTSMLMGYVQN 247

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           G   +   +F+ M     ++P +   + ++  L + GE+ +A  + +SM  + N A W T
Sbjct: 248 GRIEDAEELFEVMP----VKPVIA-CNAMISGLGQKGEIAKARRVFDSMKER-NDASWQT 301

Query: 482 LL 483
           ++
Sbjct: 302 VI 303



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 121/259 (46%), Gaps = 24/259 (9%)

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           N  I   ++IG +  A++LF+    +++ SW+ M+ GY  +  P++A  LF EM      
Sbjct: 21  NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEM------ 74

Query: 305 PD--VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           PD  +IS  G +S   + G +D  + +   M    +    +  TAL+  Y+  G +D A 
Sbjct: 75  PDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNV----VSWTALVKGYVHNGKVDVAE 130

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP-KDDLIFLGVLIACSHS 421
            +F+ M +KN +S+ VM+ G   +G  ++A K +     E IP KD++    ++      
Sbjct: 131 SLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLY-----EMIPDKDNIARTSMIHGLCKE 185

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           G   E   IF  M     I      ++ +V    +   ++ A  I + MP K  ++ W +
Sbjct: 186 GRVDEAREIFDEMSERSVIT-----WTTMVTGYGQNNRVDDARKIFDVMPEKTEVS-WTS 239

Query: 482 LLLACRNHQNVTLAEVVVE 500
           +L+    +  +  AE + E
Sbjct: 240 MLMGYVQNGRIEDAEELFE 258


>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 471

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 166/416 (39%), Positives = 260/416 (62%), Gaps = 3/416 (0%)

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK 222
           M  A  VF     K++V W  ++ G++   ++  AR  FD  P++D + W+ M+ GY  +
Sbjct: 41  MVSANKVFCEMVEKNVVIWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMVAGY-IE 99

Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
            G++  AR LF+ MP +D++SWN++++GYA IGD+ A +++F+EM ERNVFSW+ +I GY
Sbjct: 100 MGNMMEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGY 159

Query: 283 AQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHVFMKR-SRITM 340
           AQ+G   E L  F+ M+ +G V P+  ++   +SACA++GA D GK +H + +      +
Sbjct: 160 AQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKV 219

Query: 341 DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME 400
           D+ V+ ALIDMY KCG+++ A  +F  + ++++IS+N MI GL  +G G EAL  F +M+
Sbjct: 220 DVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMK 279

Query: 401 TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460
             GI  D + F+GVL AC H GL  +G   F SM     I P++EH  C+VDLLSRAG L
Sbjct: 280 NCGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLLSRAGFL 339

Query: 461 EQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520
            QA+  +  MP+K +  +W TLL A + ++ V   E+ ++ L++L+  +   +V+LSNIY
Sbjct: 340 TQAVEFINKMPVKADAVIWATLLGASKVYKKVDTGELALKELIKLEPRNPANFVMLSNIY 399

Query: 521 ADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
            DAG ++ A R++  MR    KKE G S IE D  + +F S      ++EEL+ ++
Sbjct: 400 GDAGRFDDAARLKVAMRDTGFKKEAGISWIETDDGLVKFYSSGEKHPRTEELQRIL 455



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 123/268 (45%), Gaps = 43/268 (16%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D+ + N ++  Y + G+M  ARS+F+    +D++SWN VL G+   G+M     VFDEM 
Sbjct: 86  DIVLWNTMVAGYIEMGNMMEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEML 145

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-------------------------- 239
           +++  SW+ +I GY  + G +S     F+ M  +                          
Sbjct: 146 ERNVFSWNGLIKGY-AQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFG 204

Query: 240 ---------------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQ 284
                          D+   N++ID Y K G +  A ++F  +  R++ SW+ MI+G A 
Sbjct: 205 KRVHKYGENLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAA 264

Query: 285 HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMI 343
           HG+  EAL LF EM   G+ PD ++ +G + AC  +G ++ G  + +       IT  + 
Sbjct: 265 HGHGTEALDLFHEMKNCGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSITPQIE 324

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKK 371
               ++D+  + G L +A      M  K
Sbjct: 325 HCGCVVDLLSRAGFLTQAVEFINKMPVK 352



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 2/151 (1%)

Query: 58  NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKG-LLVDNYTYP 116
           N  +M+  ER+F+++ + N +  N +I+GY Q+    + L  +  M  +G +  ++ T  
Sbjct: 130 NIGDMEACERVFDEMLERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLT 189

Query: 117 FVLKACGVLMGLVEGTEIHGEVVKMGF-LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI 175
            VL AC  L     G  +H     +G+   DV V N LI MY KCG +  A  VF+G + 
Sbjct: 190 LVLSACAKLGAFDFGKRVHKYGENLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKR 249

Query: 176 KDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
           +DL+SWN ++ G    G   +A ++F EM  
Sbjct: 250 RDLISWNTMINGLAAHGHGTEALDLFHEMKN 280


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 178/501 (35%), Positives = 282/501 (56%), Gaps = 8/501 (1%)

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           +F+ +   +    N+MI G T +    KA+  +V M  +G  +D+ T   VL AC  L  
Sbjct: 253 VFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHL 312

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
           L  G  +HG  VK GF+    + N L+ MYS C        +F     K++VSW  ++  
Sbjct: 313 LFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITS 372

Query: 188 FVECGEMGKAREVFDEM------PQKDAISWSI-MIDGYRKKKGDISSARILFEHMPIKD 240
           +   G   K   +F EM      P   AI+ ++    G    K   S       +   K 
Sbjct: 373 YTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKV 432

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
           L   N++++ Y K G++  A+ +F+ +  +++ SW+ +I GY+++    EA  LF EML 
Sbjct: 433 LAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLL 492

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
           Q +RP+ +++   + A A + +L+ G+ +H +  R     D  V  ALIDMY+KCG+L  
Sbjct: 493 Q-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLL 551

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           ARR+F  ++ KN+IS+ +M+AG GM+G G +A+  F QM   GI  D   F  +L ACSH
Sbjct: 552 ARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSH 611

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
           SGL  EG+R F +M++   IEP+L+HY+C+VDLL   G L++A   ++SMP++P+ ++W 
Sbjct: 612 SGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWV 671

Query: 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540
           +LL  CR H+NV LAE V E + EL+ ++ G YVLL+NIYA+A  WE   +++  +  R 
Sbjct: 672 SLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGRG 731

Query: 541 IKKETGRSVIEIDGNIKEFVS 561
           +++ TG S IE  G +  F++
Sbjct: 732 LRENTGCSWIEAKGKVHVFIA 752



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 136/525 (25%), Positives = 235/525 (44%), Gaps = 42/525 (8%)

Query: 61  NMDQAERLFNQIYQ-PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVL 119
           +++ A R+F+++ Q  +  +   ++ GY ++ + ++ +  +  M   G+  D YT   VL
Sbjct: 144 DLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVL 203

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           K    L  + +G  +HG + K+GF     V N L+  Y+K      A  VF+G   +D++
Sbjct: 204 KCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVI 263

Query: 180 SWNLVLRGFVECGEMGKAREVF-------DEMPQKDAIS------------WSIMIDGYR 220
           SWN ++ G    G   KA E+F       +E+     +S               ++ GY 
Sbjct: 264 SWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYS 323

Query: 221 KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMID 280
            K G IS   +             N ++D Y+   D  +  ++F  M ++NV SW+ MI 
Sbjct: 324 VKTGFISQTSLA------------NVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMIT 371

Query: 281 GYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM 340
            Y + G   +   LF+EM  +G RPD+ ++  A+ A A    L  GK +H +  R+ +  
Sbjct: 372 SYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEK 431

Query: 341 DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME 400
            + V  AL++MY+KCG+++EA+ IF  +  K++IS+N +I G   N    EA   F +M 
Sbjct: 432 VLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEML 491

Query: 401 TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460
            +  P    +   +  A S S L   G  +     R   +E      + L+D+  + G L
Sbjct: 492 LQLRPNAVTMTCILPAAASLSSL-ERGREMHAYALRRGYLEDDFV-ANALIDMYVKCGAL 549

Query: 461 EQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL-VELKADDCGLYVLLSNI 519
             A  + + +  K NL  W  ++     H     A  + E + V   A D   +  +   
Sbjct: 550 LLARRLFDRLSNK-NLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYA 608

Query: 520 YADAGMWEHALRIRKMMRK-RKIKKETGRSVIEID-----GNIKE 558
            + +G+ +   R    MRK  KI+         +D     GN+KE
Sbjct: 609 CSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKE 653



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 159/331 (48%), Gaps = 10/331 (3%)

Query: 46  TLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKR 105
           +L+ +L+ + S N  +     ++F  + Q N      MI  YT++    K    +  M  
Sbjct: 333 SLANVLLDMYS-NCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGL 391

Query: 106 KGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGC 165
           +G   D +     L A      L  G  +HG  ++ G    + V N L+ MY KCG+M  
Sbjct: 392 EGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEE 451

Query: 166 ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM---PQKDAISWSIMIDGYRK- 221
           A+ +F+G   KD++SWN ++ G+       +A  +F EM    + +A++ + ++      
Sbjct: 452 AKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQLRPNAVTMTCILPAAASL 511

Query: 222 ---KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM 278
              ++G    A  L       D ++ N++ID Y K G L+ A++LF+ +  +N+ SW+IM
Sbjct: 512 SSLERGREMHAYALRRGYLEDDFVA-NALIDMYVKCGALLLARRLFDRLSNKNLISWTIM 570

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSR 337
           + GY  HG  ++A+ LF +M   G+ PD  S    + AC+  G  D G ++     K  +
Sbjct: 571 VAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHK 630

Query: 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           I   +   T ++D+ +  G+L EA     SM
Sbjct: 631 IEPRLKHYTCMVDLLINTGNLKEAYEFIDSM 661



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 175/414 (42%), Gaps = 71/414 (17%)

Query: 110 VDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSV 169
           VD+ +Y  VL+ C  +  L  G   H            F+V       S  G  G     
Sbjct: 89  VDDRSYGAVLQLCSEVRSLEGGKRAH------------FLVRA-----SSLGRDG----- 126

Query: 170 FEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ-KDAISWSIMIDGYRKKKGDISS 228
                + +++   LVL  +++CG++  AR VFDEMPQ  D   W+ ++ GY  K GD+  
Sbjct: 127 -----MDNVLGQKLVLM-YLKCGDLENARRVFDEMPQVSDVRVWTALMSGY-AKAGDLRE 179

Query: 229 ARILFEHMP--------------IKDLISWNSMIDG------------------------ 250
             +LF  M               +K +    S+ DG                        
Sbjct: 180 GVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMA 239

Query: 251 -YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
            YAK      A  +F+ MP R+V SW+ MI G   +G   +A+ LF  M  +G   D  +
Sbjct: 240 FYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSAT 299

Query: 310 VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369
           ++  + ACA++  L LG+ +H +  ++       +   L+DMY  C       +IF +M 
Sbjct: 300 LLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMV 359

Query: 370 KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR 429
           +KNV+S+  MI      G  ++    F +M  EG   D       L A + + L   G  
Sbjct: 360 QKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKS 419

Query: 430 IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
           +     R+ G+E  L   + L+++  + G +E+A  I + +  K ++  W TL+
Sbjct: 420 VHGYAIRN-GMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSK-DMISWNTLI 471


>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
          Length = 553

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 177/481 (36%), Positives = 275/481 (57%), Gaps = 19/481 (3%)

Query: 99  FYVNMKRKGLLVDNYTYPFV--LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGM 156
           + + MK + L +      FV  LK C     +VE  +IH  +VK       F+V  ++ +
Sbjct: 44  YVLEMKLRALKIREMEDMFVPILKDCP---NIVELKKIHAHIVKFSLSQSSFLVTKMVDV 100

Query: 157 YSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMI 216
            +  G    A  +F+G    +   +N ++R +        A  V+ +M         I  
Sbjct: 101 CNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFP 160

Query: 217 DGYRKKKGDISSARIL------------FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
           D +       S A ++            F+     + +  NS+++ Y K   L  A ++F
Sbjct: 161 DKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVF 220

Query: 265 NEMPERN--VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
            EM ER+  +FSW+ ++ GYA+ G   +AL  FR M   G+ PD IS++  +  CAQ+GA
Sbjct: 221 EEMTERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGA 280

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
           L+LGKWIH++  ++    ++ V  ALI+MY KCGS+D+ RR+F  M +++VIS++ MI G
Sbjct: 281 LELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVG 340

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
           L  +G   EA++ F +M+   I    + F+G+L AC+H+GL  EG R F+SMKR   IEP
Sbjct: 341 LANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEP 400

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
            +EHY CLV+LL  +G L+QAL +V+ MP KP+  +WG+LL +CR+H N+ +A + +E L
Sbjct: 401 GVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHL 460

Query: 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
           +EL+  D G YVLLSN+YAD G W+   R+RK+MR + +KK  G S IE+D  ++EF SG
Sbjct: 461 LELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASG 520

Query: 563 E 563
           +
Sbjct: 521 D 521



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 183/386 (47%), Gaps = 17/386 (4%)

Query: 1   MKTLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL 60
           MK  A     +++  V +L+       + +I A +    L    F +++  M     +  
Sbjct: 48  MKLRALKIREMEDMFVPILKDCPNIVELKKIHAHIVKFSLSQSSFLVTK--MVDVCNHYG 105

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM-----KRKGLLVDNYTY 115
             + A  LF  +  PN +++N MIR Y  +     A++ Y  M         +  D +T+
Sbjct: 106 ETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTF 165

Query: 116 PFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI 175
           PFV+K+C  LM    G ++HG V K G   +  V N L+ MY KC  +  A  VFE    
Sbjct: 166 PFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTE 225

Query: 176 KD--LVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISW-SIMIDGYRKKKGDISS 228
           +D  + SW  ++ G+   G    A E F  M     + D IS  S++ D  +    ++  
Sbjct: 226 RDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGK 285

Query: 229 ARILFEHMP--IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
              ++      ++++   N++I+ YAK G +   ++LF++M ER+V SWS MI G A HG
Sbjct: 286 WIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHG 345

Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS-RITMDMIVQ 345
             +EA+ LF+EM    + P +I+ +G ++ACA  G L+ G      MKR   I   +   
Sbjct: 346 RAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHY 405

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKK 371
             L+++    G LD+A  +   M +K
Sbjct: 406 GCLVNLLGLSGRLDQALELVKKMPRK 431


>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 590

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 170/505 (33%), Positives = 287/505 (56%), Gaps = 13/505 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N+  A +LF+++   +T   N++I GY ++    ++   +  M  K ++  N        
Sbjct: 62  NIGAARQLFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWN-------- 113

Query: 121 ACGVLMGLVEGTEIH--GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDL 178
              ++ G +E   I    +  +     +    N +I    +   +  A  +FE    +++
Sbjct: 114 --SMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNV 171

Query: 179 VSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI 238
           +S+  ++ G+ + GE+ +AR +F+ MPQK+ +SW++MI GY  + G    A  LFE MP 
Sbjct: 172 ISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGY-VENGKFDEAENLFEQMPD 230

Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
           K++++  +MI GY K G    A+ LF+++P R++ SW+ MI GYAQ+G+ +EAL L  +M
Sbjct: 231 KNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQM 290

Query: 299 LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
           L  G++PD  +++  ++AC+ + +L  G+  HV + +S     + +  ALI MY KCGS+
Sbjct: 291 LKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSI 350

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
            ++   F  +   +V+S+N MIA    +GF + AL  F +M +  +  D + FL +L AC
Sbjct: 351 LDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSAC 410

Query: 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
            H+G   E    F SM     I P+ EH++CLVD+LSR G++E+A  I++ MP + +  +
Sbjct: 411 GHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGI 470

Query: 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
           WG LL AC  H NV L E+  + +VEL+  + G YV+LSNIYA AGMW    R+R +MR+
Sbjct: 471 WGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMRE 530

Query: 539 RKIKKETGRSVIEIDGNIKEFVSGE 563
           + +KK+   S +EID  +  F+  +
Sbjct: 531 QGVKKQPAYSWMEIDNKVHFFLGDD 555



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 111/360 (30%), Positives = 181/360 (50%), Gaps = 17/360 (4%)

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           + H   +K+    DV+  N  IG  ++ G++G AR +F+    +D VSWN ++ G+ + G
Sbjct: 33  QFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKNG 92

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA 252
              +++ +F  MP K+ +SW+ MI G  + +  I  A   F+ MP ++  SWN+MI G  
Sbjct: 93  CFDESKRLFGLMPTKNVVSWNSMIAGCIEDE-RIDEAWQYFQAMPQRNTASWNAMISGLV 151

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
           +   +  A +LF EMP RNV S++ M+DGYA+ G  ++A  LF  M     + +V+S   
Sbjct: 152 RYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCM----PQKNVVSWTV 207

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
            IS   + G  D  + +   M    I    +  TA+I  Y K G  D+A+ +F  +  ++
Sbjct: 208 MISGYVENGKFDEAENLFEQMPDKNI----VAMTAMITGYCKEGKTDKAKILFDQIPCRD 263

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
           + S+N MI G   NG GEEALK  +QM   G+  D    + VL ACS      EG R   
Sbjct: 264 LASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEG-RKTH 322

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGEL---EQALNIVESMPMKPNLALWGTLLLACRNH 489
            +    G E ++   + L+ +  + G +   E A   ++     P++  W  ++ A   H
Sbjct: 323 VLVLKSGYESRISICNALITMYCKCGSILDSELAFRQID----HPDVVSWNAMIAAFARH 378


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 172/485 (35%), Positives = 261/485 (53%), Gaps = 63/485 (12%)

Query: 79  MHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEV 138
           M N +I G+ +S   + +   +V+M R   +    TY  VL ACG    L+ G ++H   
Sbjct: 128 MWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVH--- 184

Query: 139 VKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAR 198
                                       + V E   + D    N ++  + ECG+M  A 
Sbjct: 185 ----------------------------KRVLESGVLPDQRVENALVDMYAECGDMDAA- 215

Query: 199 EVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLV 258
                        W                  +LFE M ++ + SW S+I G  + G + 
Sbjct: 216 -------------W------------------VLFEGMQMRSMASWTSVISGLVRSGQVD 244

Query: 259 AAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACA 318
            A+ LF+ MPER+  +W+ MIDGY Q G  ++AL  FR M    VR D  +++  ++ACA
Sbjct: 245 RARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACA 304

Query: 319 QVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNV 378
           Q+GAL+ G+W  ++M R  I MD+ V  ALIDMY KCGS++ A  +F  M  ++  ++  
Sbjct: 305 QLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTA 364

Query: 379 MIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC 438
           +I GL +NG GEEA+  F +M       D++ F+GVL AC+H+GL  +G   F SM    
Sbjct: 365 IILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAY 424

Query: 439 GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVV 498
            I P + HY CL+D+L RAG+L++AL+ ++ MPMKPN  +WGTLL +CR + N  + E+ 
Sbjct: 425 NISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELA 484

Query: 499 VEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKE 558
            E L+EL  D+   Y+LLSN+YA +  W+   RIR+++ ++ IKKE G S+IE++G I E
Sbjct: 485 AERLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHE 544

Query: 559 FVSGE 563
           FV+ +
Sbjct: 545 FVAAD 549



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 104/239 (43%), Gaps = 11/239 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            +D+A  LF+ + + +T     MI GY Q    + AL  +  M+   +  D +T   V+ 
Sbjct: 242 QVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVT 301

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L  G      + ++G   DVFV N LI MYSKCG +  A  VF+    +D  +
Sbjct: 302 ACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFT 361

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHM 236
           W  ++ G    G   +A ++F  M +     D +++  ++       G +   R  F  M
Sbjct: 362 WTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTAC-THAGLVDKGREFFLSM 420

Query: 237 P-----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQHGNPK 289
                    ++ +  +ID   + G L  A    ++MP + N   W  ++     +GN +
Sbjct: 421 TEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSE 479


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 190/551 (34%), Positives = 292/551 (52%), Gaps = 45/551 (8%)

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
           ++PN      +I G  Q+    +ALS +  M  +G+  ++ T    + AC  L  L  G 
Sbjct: 323 FKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGR 382

Query: 133 EIHGEVVKMGFL-CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
           EIHG  +K+  L  D+ V N L+  Y+KC  +  AR  F   +  DLVSWN +L G+   
Sbjct: 383 EIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALR 442

Query: 192 GEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHM------PIKDL 241
           G   +A E+  EM     + D I+W+ ++ G+  + GD  +A   F+ M      P    
Sbjct: 443 GSHEEAIELLSEMKFQGIEPDIITWNGLVTGF-TQYGDGKAALEFFQRMHSMGMDPNTTT 501

Query: 242 ISW---------------------------------NSMIDGYAKIGDLVAAQQLFNEMP 268
           IS                                  +++I  Y+    L  A  +F+E+ 
Sbjct: 502 ISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELS 561

Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328
            R+V  W+ +I   AQ G    AL L REM    V  + ++++ A+ AC+++ AL  GK 
Sbjct: 562 TRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKE 621

Query: 329 IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
           IH F+ R  +     +  +LIDMY +CGS+ ++RRIF  M +++++S+NVMI+  GM+GF
Sbjct: 622 IHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGF 681

Query: 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
           G +A+  F Q  T G+  + + F  +L ACSHSGL  EG++ F+ MK    ++P +E Y+
Sbjct: 682 GMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYA 741

Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508
           C+VDLLSRAG+  + L  +E MP +PN A+WG+LL ACR H N  LAE     L EL+  
Sbjct: 742 CMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQ 801

Query: 509 DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQ 568
             G YVL++NIY+ AG WE A +IR +M++R + K  G S IE+   +  FV G+     
Sbjct: 802 SSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPL 861

Query: 569 SEELELVIQSF 579
            E++   ++S 
Sbjct: 862 MEQISAKMESL 872



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 115/419 (27%), Positives = 210/419 (50%), Gaps = 35/419 (8%)

Query: 29  LQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYT 88
            Q+ AQL  N +    F  S+LL       T  ++ A R+F+++ + N +    ++  Y 
Sbjct: 109 FQVHAQLVVNGVDVCEFLGSRLLEVYC--QTGCVEDARRMFDKMSERNVFSWTAIMEMYC 166

Query: 89  QSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF 148
              + ++ +  +  M  +G+  D++ +P V KAC  L     G +++  ++ +GF  +  
Sbjct: 167 GLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSC 226

Query: 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP--- 205
           V   ++ M+ KCG M  AR  FE  E KD+  WN+++ G+   GE  KA +   +M    
Sbjct: 227 VKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSG 286

Query: 206 -QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
            + D ++W+ +I GY +      +++   E   +KD                        
Sbjct: 287 VKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDF----------------------- 323

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
               + NV SW+ +I G  Q+G   EAL +FR+M+ +GV+P+ I++  A+SAC  +  L 
Sbjct: 324 ----KPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLR 379

Query: 325 LGKWIHVF-MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383
            G+ IH + +K   +  D++V  +L+D Y KC S++ ARR F  + + +++S+N M+AG 
Sbjct: 380 HGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGY 439

Query: 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
            + G  EEA++  ++M+ +GI  D + + G++   +  G        FQ M    G++P
Sbjct: 440 ALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSM-GMDP 497



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 132/245 (53%), Gaps = 3/245 (1%)

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           +++ Y + G +  A+++F++M ERNVFSW+ +++ Y   G+ +E + LF  M+ +GVRPD
Sbjct: 130 LLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPD 189

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
                    AC+++    +GK ++ +M       +  V+ +++DM++KCG +D ARR F 
Sbjct: 190 HFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFE 249

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            +  K+V  +N+M++G    G  ++ALKC + M+  G+  D + +  ++   + SG   E
Sbjct: 250 EIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEE 309

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM---KPNLALWGTLL 483
             + F  M      +P +  ++ L+    + G   +AL++   M +   KPN     + +
Sbjct: 310 ASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAV 369

Query: 484 LACRN 488
            AC N
Sbjct: 370 SACTN 374



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 113/251 (45%), Gaps = 15/251 (5%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A  +F+++   +  + N++I    QS     AL     M    + V+  T    L 
Sbjct: 549 SLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALP 608

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L +G EIH  +++ G     F++N LI MY +CG +  +R +F+    +DLVS
Sbjct: 609 ACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVS 668

Query: 181 WNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           WN+++  +   G    A  +F +      + + I+++ ++       G I      F+ M
Sbjct: 669 WNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSAC-SHSGLIEEGWKYFKMM 727

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNE-------MP-ERNVFSWSIMIDGYAQHGNP 288
             K   + +  ++ YA + DL++    FNE       MP E N   W  ++     H NP
Sbjct: 728 --KTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNP 785

Query: 289 KEALYLFREML 299
             A Y  R + 
Sbjct: 786 DLAEYAARYLF 796



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 109/236 (46%), Gaps = 21/236 (8%)

Query: 305 PD-VISVMGAI-SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           PD  I +  +I   C ++  L LG  +H  +  + + +   + + L+++Y + G +++AR
Sbjct: 85  PDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDAR 144

Query: 363 RIFYSMTKKNVISYNV---MIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           R+F  M+++NV S+     M  GLG     EE +K F  M  EG+  D  +F  V  ACS
Sbjct: 145 RMFDKMSERNVFSWTAIMEMYCGLGDY---EETIKLFYLMVNEGVRPDHFVFPKVFKACS 201

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSC----LVDLLSRAGELEQALNIVESMPMKPN 475
                 + YR+ + +  +  +    E  SC    ++D+  + G ++ A    E +  K +
Sbjct: 202 E----LKNYRVGKDVYDYM-LSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-D 255

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEG--LVELKADDCGLYVLLSNIYADAGMWEHA 529
           + +W  ++    +      A   +    L  +K D      ++S  YA +G +E A
Sbjct: 256 VFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISG-YAQSGQFEEA 310


>gi|326530660|dbj|BAK01128.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 613

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 159/408 (38%), Positives = 257/408 (62%), Gaps = 4/408 (0%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D    N L+    + G +  AR +F+   ++DLVS+N +L G    G+M  AR++FD MP
Sbjct: 166 DAVTWNTLLRACLRSGLLPSARHLFDQMPVRDLVSYNSMLSGHAAAGDMDGARQLFDGMP 225

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
           ++D +SW+ M+ G+  + GD+  AR +F+ MP +D++SWNSM+DGYA+ GD++AA+ +F+
Sbjct: 226 ERDVVSWNSMLAGH-TRCGDMEEARRMFDAMPERDVVSWNSMLDGYAQAGDVLAARAVFD 284

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR-PDVISVMGAISACAQVGALD 324
            MP R+  SW++++  YA+  N +E L LF  M+  G   P+  + +  ++AC  +G L+
Sbjct: 285 GMPRRSTVSWNVVLALYARVKNWRECLRLFDAMMAVGAAVPNEKTFVSVLTACGSLGDLE 344

Query: 325 LGKWIHVFMKRSRITM--DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
            GK +H  +++   T+  D+++ TAL+ MY KCG ++ AR IF SM +++V S+N MI G
Sbjct: 345 RGKRVHDLVRQRWETLVPDVLLLTALLTMYAKCGVMEAARVIFDSMGERSVPSWNSMIIG 404

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
            G++G  E+AL+ F +ME  G   ++  F+ VL +C+H GL  EG+  F  M R  G+EP
Sbjct: 405 YGLHGQSEKALELFLEMERTGPRPNETTFVCVLSSCAHGGLVLEGWWCFDRMVRLYGVEP 464

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
           K EH+ C++DLL RAG L  +  +V+++  K + ALWG ++ A R      L E V + L
Sbjct: 465 KAEHFGCMMDLLGRAGLLTDSDTLVQNLQEKASPALWGAMVSASRAQNGSRLGEFVGKKL 524

Query: 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           +E++  + G YVLLSNIYA  G W    ++R+MM+    +K+ G S++
Sbjct: 525 IEMRPKEVGPYVLLSNIYAGEGRWNDVEKVREMMKGNGAEKDVGLSLV 572



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 152/370 (41%), Gaps = 86/370 (23%)

Query: 7   AKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAE 66
           A   L N L++      +     ++ A +   D +T    L   L S   P+      A 
Sbjct: 134 ADLRLANSLLARYLAHGSHASARRLFADVPRPDAVTWNTLLRACLRSGLLPS------AR 187

Query: 67  RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
            LF+Q+   +   +N+M+ G+  + +   A   +  M  +                    
Sbjct: 188 HLFDQMPVRDLVSYNSMLSGHAAAGDMDGARQLFDGMPER-------------------- 227

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
                              DV   N ++  +++CG M  AR +F+    +D+VSWN +L 
Sbjct: 228 -------------------DVVSWNSMLAGHTRCGDMEEARRMFDAMPERDVVSWNSMLD 268

Query: 187 GFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK----------------------- 223
           G+ + G++  AR VFD MP++  +SW++++  Y + K                       
Sbjct: 269 GYAQAGDVLAARAVFDGMPRRSTVSWNVVLALYARVKNWRECLRLFDAMMAVGAAVPNEK 328

Query: 224 ------------GDISSARILFE------HMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
                       GD+   + + +         + D++   +++  YAK G + AA+ +F+
Sbjct: 329 TFVSVLTACGSLGDLERGKRVHDLVRQRWETLVPDVLLLTALLTMYAKCGVMEAARVIFD 388

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
            M ER+V SW+ MI GY  HG  ++AL LF EM   G RP+  + +  +S+CA  G +  
Sbjct: 389 SMGERSVPSWNSMIIGYGLHGQSEKALELFLEMERTGPRPNETTFVCVLSSCAHGGLVLE 448

Query: 326 GKWIHVFMKR 335
           G W    M R
Sbjct: 449 GWWCFDRMVR 458



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 12/104 (11%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           M+ A  +F+ + + +    N+MI GY      +KAL  ++ M+R G   +  T+  VL +
Sbjct: 380 MEAARVIFDSMGERSVPSWNSMIIGYGLHGQSEKALELFLEMERTGPRPNETTFVCVLSS 439

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGC 165
           C            HG +V  G+ C   +V  L G+  K  H GC
Sbjct: 440 CA-----------HGGLVLEGWWCFDRMVR-LYGVEPKAEHFGC 471


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 177/508 (34%), Positives = 283/508 (55%), Gaps = 30/508 (5%)

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
           + A  LF+++   +    N+MI GY  +   ++ L  Y  M   G+ VD  T   VL  C
Sbjct: 202 ESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGC 261

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
                L  G  +H   +K  F   +   N L+ MYSKCG +  A  VFE    +++VSW 
Sbjct: 262 ANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWT 321

Query: 183 LVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMPI 238
            ++ G+   G    A ++  +M ++    D ++ + ++     + G + + + + +++  
Sbjct: 322 SMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHAC-ARSGSLDNGKDVHDYIKA 380

Query: 239 KDLIS----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
            ++ S     N+++D YAK G + AA  +F+ M  +++ SW+ MI               
Sbjct: 381 NNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGE------------- 427

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
                   ++PD  ++   + ACA + AL+ GK IH ++ R+  + D  V  AL+D+Y+K
Sbjct: 428 --------LKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVK 479

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG L  AR +F  +  K+++S+ VMIAG GM+G+G EA+  F +M   GI  D++ F+ +
Sbjct: 480 CGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISI 539

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L ACSHSGL  +G+R F  MK    IEPKLEHY+C+VDLLSR G L +A   +E++P+ P
Sbjct: 540 LYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAP 599

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           +  +WG LL  CRN+ ++ LAE V E + EL+ ++ G YVLL+NIYA+A  WE   R+R+
Sbjct: 600 DATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLRE 659

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSG 562
            + K+ ++K  G S IEI G +  FVSG
Sbjct: 660 KIGKQGLRKNPGCSWIEIKGKVNLFVSG 687



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 148/280 (52%), Gaps = 22/280 (7%)

Query: 224 GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLV--------------------AAQQL 263
           GD+   R +F+ M  K++  WN M+  YAKIGD                      +A +L
Sbjct: 148 GDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFEL 207

Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL 323
           F+++ +R+V SW+ MI GY  +G  +  L ++++M+  G+  D+ +++  +  CA  G L
Sbjct: 208 FDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTL 267

Query: 324 DLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383
            LGK +H    +S     +     L+DMY KCG LD A R+F  M ++NV+S+  MIAG 
Sbjct: 268 SLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGY 327

Query: 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443
             +G  + A+K   QME EG+  D +    +L AC+ SG    G  +   +K +  +E  
Sbjct: 328 TRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN-NMESN 386

Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
           L   + L+D+ ++ G +E A ++  +M +K ++  W T++
Sbjct: 387 LFVCNALMDMYAKCGSMEAANSVFSTMVVK-DIISWNTMI 425



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 109/266 (40%), Gaps = 55/266 (20%)

Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328
           +  V  ++  I  + Q G+ + A+ L    +CQ    +  +    +  CA + +   GK 
Sbjct: 63  DHQVTDYNAKILHFCQLGDLENAMELI--CMCQKSELETKTYGSVLQLCAGLKSFTDGKK 120

Query: 329 IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN---------------- 372
           +H  +K + + +D  +   L+  Y  CG L E RR+F +M KKN                
Sbjct: 121 VHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGD 180

Query: 373 -----------------------------------VISYNVMIAGLGMNGFGEEALKCFA 397
                                              VIS+N MI+G   NG  E  L  + 
Sbjct: 181 FKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYK 240

Query: 398 QMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA 457
           QM   GI  D    + VL+ C++SG  + G +   S+      E ++   + L+D+ S+ 
Sbjct: 241 QMMYLGIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIKSSFERRINFSNTLLDMYSKC 299

Query: 458 GELEQALNIVESMPMKPNLALWGTLL 483
           G+L+ AL + E M  + N+  W +++
Sbjct: 300 GDLDGALRVFEKMGER-NVVSWTSMI 324


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 170/479 (35%), Positives = 268/479 (55%), Gaps = 63/479 (13%)

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           M  KG+  + +T   V+KAC  +  L +G + H  ++KMGF  DV V   L+ MY++   
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYAR--- 57

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK 222
                                       CG +  A  VFD+M ++               
Sbjct: 58  ----------------------------CGSLEDAGHVFDKMSER--------------- 74

Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
                S R            +WN+MI G+A+  D+  A +LF EM ER+V SW+ +I GY
Sbjct: 75  -----STR------------TWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGY 117

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
           AQ+G   E+L +F +M   G++ D   +   +SACA + AL+LG+  H ++ +S   +D+
Sbjct: 118 AQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDI 177

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
           +V +AL+DMY K GS+++A ++F  M ++N +S+N +I G   +G G +A+  F QM   
Sbjct: 178 VVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQA 237

Query: 403 GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
           GI  +++ F+GVL ACSH+GL  EG   F  M ++ GI P + HY+C++DLL RAG L++
Sbjct: 238 GIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDE 297

Query: 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522
           A N +  MP++P++++WG LL ACR H N  LA+ + E L+ ++    G+YVLLSNIYA 
Sbjct: 298 AENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAA 357

Query: 523 AGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
           AG W+ A ++RK+M+ R + K+ G S IE+   +  FV+GE    Q +E+   ++S  +
Sbjct: 358 AGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSR 416



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 125/271 (46%), Gaps = 11/271 (4%)

Query: 39  DLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALS 98
           D ++E  T +   M        +M +A +LF ++ + +      +I GY Q+    ++L+
Sbjct: 69  DKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLN 128

Query: 99  FYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYS 158
            +  M++ G+  D +    VL AC  L  L  G + H  VV+ GF  D+ V + L+ MY+
Sbjct: 129 VFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYA 188

Query: 159 KCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSI 214
           K G M  A  VF+    ++ VSWN ++ G  + G    A  +F++M Q     + IS+  
Sbjct: 189 KSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVG 248

Query: 215 MIDGYRKKKGDISSARILFEHMP-----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMP- 268
           ++       G ++  R  F  M      + D+  +  MID   + G L  A+   N MP 
Sbjct: 249 VLSAC-SHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPV 307

Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           E +V  W  ++     HGN + A  +   +L
Sbjct: 308 EPDVSVWGALLGACRIHGNTELAKRIAEHLL 338


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 178/522 (34%), Positives = 288/522 (55%), Gaps = 13/522 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A  +FN   + N  + N M+  Y Q S+  K+   +  M+  G+  + +TYP +L+
Sbjct: 295 DIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILR 354

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C     +  G +IH   +K GF  D++V   LI MYSK   +  AR + E  E +D+VS
Sbjct: 355 TCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVS 414

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK- 239
           W  ++ G+V+     +A   F EM  +D   W   I G        +  + + + + I  
Sbjct: 415 WTSMIAGYVQHDFCEEALATFKEM--QDCGVWPDNI-GLASAASACAGIKAMRQGLQIHA 471

Query: 240 ---------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
                    D+  WN++++ YA+ G    A  LF E+  ++  +W+ +I G+ Q    ++
Sbjct: 472 RVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQ 531

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
           AL +F +M   G + +V + + AISA A +  +  GK +H    ++  T +  V  ALI 
Sbjct: 532 ALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALIS 591

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           +Y KCGS+++A+ IF  M+ +N +S+N +I     +G G EAL  F QM+ EG+  +D+ 
Sbjct: 592 LYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVT 651

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
           F+GVL ACSH GL  EG   F+SM    G+ P  +HY+C+VD+L RAG+L++A   V+ M
Sbjct: 652 FIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEM 711

Query: 471 PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530
           P+  N  +W TLL AC+ H+N+ + E+  + L+EL+  D   YVLLSN YA  G W +  
Sbjct: 712 PITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRD 771

Query: 531 RIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           ++RKMM+ R I+KE GRS IE+   +  F  G+     S+++
Sbjct: 772 QVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQI 813



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/445 (27%), Positives = 208/445 (46%), Gaps = 12/445 (2%)

Query: 47  LSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK 106
           +  LL+ L + N L + QA ++F ++   +      M+ GY Q    ++A   Y  M   
Sbjct: 80  IGNLLIDLYAKNGL-VWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWT 138

Query: 107 GLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCA 166
            ++   Y    VL AC       +G  IH +V K  F  + FV N LI +Y   G    A
Sbjct: 139 AVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLA 198

Query: 167 RSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKK 222
             VF      D V++N ++ G  +CG    A ++FDEM     + D ++ + ++      
Sbjct: 199 ERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAAC-AS 257

Query: 223 KGDISSARILFEHMPIK----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM 278
            GD+   + L  ++       D I+  S++D Y K GD+  A  +FN     NV  W++M
Sbjct: 258 VGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLM 317

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338
           +  Y Q  +  ++  +F +M   G+ P+  +    +  C   G ++LG+ IH    ++  
Sbjct: 318 LVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGF 377

Query: 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
             DM V   LIDMY K   LD+AR+I   + K++V+S+  MIAG   + F EEAL  F +
Sbjct: 378 ESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKE 437

Query: 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458
           M+  G+  D++       AC+      +G +I   +    G    +  ++ LV+L +R G
Sbjct: 438 MQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVS-GYAADISIWNTLVNLYARCG 496

Query: 459 ELEQALNIVESMPMKPNLALWGTLL 483
             E+A ++   +  K  +  W  L+
Sbjct: 497 RSEEAFSLFREIDHKDEIT-WNGLI 520



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 120/447 (26%), Positives = 215/447 (48%), Gaps = 24/447 (5%)

Query: 79  MHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC---GVLMGLVEGTEIH 135
           +H ++ + +    NP+K LS           + +      L+AC   G    LV   EIH
Sbjct: 10  LHRSLAK-FIVPDNPEKILSLVAAKASHHRALGSADLTCALQACRGRGNRWPLV--LEIH 66

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
              V  G   D  + N LI +Y+K G +  AR VF+    +D VSW  +L G+ + G   
Sbjct: 67  ATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGK 126

Query: 196 KAREVFDEM------PQKDAIS--WSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM 247
           +A  ++ +M      P    +S   S    G    +G +  A++ ++     +    N++
Sbjct: 127 EAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQV-YKQAFCSETFVGNAL 185

Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           I  Y   G    A+++F +M   +  +++ +I G+AQ G+ + AL +F EM   G+RPD 
Sbjct: 186 IALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDC 245

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
           ++V   ++ACA VG L  GK +H ++ ++ ++ D I + +L+D+Y+KCG ++ A  IF  
Sbjct: 246 VTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNL 305

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
             + NV+ +N+M+   G      ++ + F QM+  GI  +   +  +L  C+ +G    G
Sbjct: 306 GDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELG 365

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
            +I  S+    G E  +     L+D+ S+   L++A  I+E M  K ++  W +++    
Sbjct: 366 EQI-HSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILE-MLEKRDVVSWTSMIAGYV 423

Query: 488 NHQNVTLAEVVVEGLVELKA-DDCGLY 513
            H      +   E L   K   DCG++
Sbjct: 424 QH------DFCEEALATFKEMQDCGVW 444


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 185/554 (33%), Positives = 297/554 (53%), Gaps = 81/554 (14%)

Query: 68  LFNQ-IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
           LFN+ + + + +  N++I    +S +  +AL  + +M++  L     ++P  +KAC  L 
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
            +  G + H +    G+  D+FV + LI MYS CG                         
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCG------------------------- 125

Query: 187 GFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM---------- 236
                 ++  AR+VFDE+P+++ +SW+ MI GY    G+   A  LF+ +          
Sbjct: 126 ------KLEDARKVFDEIPKRNIVSWTSMIRGY-DLNGNALDAVSLFKDLLVDENDDDDA 178

Query: 237 ------------------PIKDLIS-----------------WNSMIDGYAKIGD--LVA 259
                             P K L                    N+++D YAK G+  +  
Sbjct: 179 MFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAV 238

Query: 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP-DVISVMGAISACA 318
           A+++F+++ +++  S++ ++  YAQ G   EA  +FR ++   V   + I++   + A +
Sbjct: 239 ARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVS 298

Query: 319 QVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNV 378
             GAL +GK IH  + R  +  D+IV T++IDMY KCG ++ AR+ F  M  KNV S+  
Sbjct: 299 HSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTA 358

Query: 379 MIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC 438
           MIAG GM+G   +AL+ F  M   G+  + + F+ VL ACSH+GL  EG+R F +MK   
Sbjct: 359 MIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRF 418

Query: 439 GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVV 498
           G+EP LEHY C+VDLL RAG L++A ++++ M MKP+  +W +LL ACR H+NV LAE+ 
Sbjct: 419 GVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEIS 478

Query: 499 VEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKE 558
           V  L EL + +CG Y+LLS+IYADAG W+   R+R +M+ R + K  G S++E++G +  
Sbjct: 479 VARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHV 538

Query: 559 FVSGEIFDVQSEEL 572
           F+ G+    Q E++
Sbjct: 539 FLIGDEEHPQREKI 552



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 171/350 (48%), Gaps = 25/350 (7%)

Query: 42  TEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYV 101
           ++ F  S L++  ++   L  + A ++F++I + N     +MIRGY  + N   A+S + 
Sbjct: 109 SDIFVSSALIVMYSTCGKL--EDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFK 166

Query: 102 NM------KRKGLLVDNYTYPFVLKACGVL--MGLVEGTEIHGEVVKMGFLCDVFVVNGL 153
           ++          + +D+     V+ AC  +   GL E   IH  V+K GF   V V N L
Sbjct: 167 DLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTE--SIHSFVIKRGFDRGVSVGNTL 224

Query: 154 IGMYSKCGHMGCA--RSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK---- 207
           +  Y+K G  G A  R +F+    KD VS+N ++  + + G   +A EVF  + +     
Sbjct: 225 LDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVT 284

Query: 208 -DAISWSIMIDGYRKKKGDISSARILFEH---MPIKD-LISWNSMIDGYAKIGDLVAAQQ 262
            +AI+ S ++       G +   + + +    M ++D +I   S+ID Y K G +  A++
Sbjct: 285 FNAITLSTVLLAV-SHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARK 343

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
            F+ M  +NV SW+ MI GY  HG+  +AL LF  M+  GVRP+ I+ +  ++AC+  G 
Sbjct: 344 AFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGL 403

Query: 323 LDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
              G +W +    R  +   +     ++D+  + G L +A  +   M  K
Sbjct: 404 HVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMK 453


>gi|224103137|ref|XP_002312939.1| predicted protein [Populus trichocarpa]
 gi|222849347|gb|EEE86894.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 180/516 (34%), Positives = 282/516 (54%), Gaps = 42/516 (8%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           MD+A R+F  + + +    N ++ G+ Q+ +  +A+ ++  M  +               
Sbjct: 109 MDEALRMFKLMPEGDVVSWNAIVTGFLQNGDVARAIEYFERMPERD-------------- 154

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVF------------VVNGLIGMYSKCGHMGCARSV 169
              L  LV G   +GE+ +   +   F              N LI  Y +   +  AR +
Sbjct: 155 AASLSALVSGLIRNGELDEAARVVVRFERDGGRKENLLQAYNTLIAGYGRRDRVDEARKL 214

Query: 170 FE-------------GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMI 216
           F+             G   +++VSWN ++  +V+ G +  ARE+FD+M ++D ISW+ MI
Sbjct: 215 FDQIPFCDGKGKGGDGRFGRNVVSWNTMIMCYVKAGNIVFARELFDQMMERDTISWNTMI 274

Query: 217 DGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
            GY     D+  A  LF  MP  D+ SWN MI G+A+IGDL     LF  MP++N+ SW+
Sbjct: 275 SGYVNML-DMDEASRLFCEMPNPDIFSWNKMIAGHAQIGDLDRVNDLFGRMPQKNLVSWN 333

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS 336
            +I GY ++ +   A+ +F +M  +G +PD  ++   +S  A +  L LG  IH  + ++
Sbjct: 334 SVITGYEKNDDYIGAIKIFIQMQVEGEKPDRHTLSSVLSVSAGIVDLQLGMQIHQLVTKT 393

Query: 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNGFGEEALKC 395
            I  D+ +  ALI MY +CG++ EA  IF  +  +K VIS+N MI G   +G+  EAL+ 
Sbjct: 394 VIP-DVPINNALITMYSRCGAIIEAGTIFDEVKLQKEVISWNAMIGGYASHGYAVEALEV 452

Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           F  M++  +    + F+ VL AC+H+GL  EG  IF+SM    GIEP +EHY+ LVD++S
Sbjct: 453 FKLMKSFDVRPTHITFISVLHACAHAGLVEEGREIFESMADEFGIEPSVEHYASLVDIMS 512

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515
           R G+LEQAL+++ SMP +P+ A+WG LL A + H  + +A V  E L+ L+ D    YVL
Sbjct: 513 RHGQLEQALDLINSMPFEPDKAVWGALLSAAKVHNKIEVARVAAEALIRLEPDSSAPYVL 572

Query: 516 LSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
           L N+YAD G W+ A  +R MM +  IKK+   S ++
Sbjct: 573 LYNMYADVGQWDSAAEVRIMMERSNIKKQAAYSWVD 608



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/351 (30%), Positives = 178/351 (50%), Gaps = 33/351 (9%)

Query: 151 NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAI 210
           N  I   +K G +  AR++F+  E  + VSWN ++R +V+  E+ KAR++FDEMPQ+D +
Sbjct: 1   NKKISNLAKNGRIDEARALFDQMEETNTVSWNAIIRAYVKRREIAKARKLFDEMPQRDIV 60

Query: 211 SWSIMIDGYRKKKGD--ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
           SW++MI GY    G   +   R LF+ MP +D++SWN+MI GYAK G +  A ++F  MP
Sbjct: 61  SWNLMISGYVSCHGIRFLKEGRNLFDRMPERDIVSWNTMISGYAKNGRMDEALRMFKLMP 120

Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328
           E +V SW+ ++ G+ Q+G+   A+  F  M  +    D  S+   +S   + G LD    
Sbjct: 121 EGDVVSWNAIVTGFLQNGDVARAIEYFERMPER----DAASLSALVSGLIRNGELDEAAR 176

Query: 329 IHVFMKRSRITMDMIVQ--TALIDMYMKCGSLDEARRIFYSM-------------TKKNV 373
           + V  +R     + ++Q    LI  Y +   +DEAR++F  +               +NV
Sbjct: 177 VVVRFERDGGRKENLLQAYNTLIAGYGRRDRVDEARKLFDQIPFCDGKGKGGDGRFGRNV 236

Query: 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA-TEGYRIFQ 432
           +S+N MI      G    A + F QM        D I    +I+   + L   E  R+F 
Sbjct: 237 VSWNTMIMCYVKAGNIVFARELFDQMMER-----DTISWNTMISGYVNMLDMDEASRLFC 291

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
            M       P +  ++ ++   ++ G+L++  ++   MP K NL  W +++
Sbjct: 292 EMP-----NPDIFSWNKMIAGHAQIGDLDRVNDLFGRMPQK-NLVSWNSVI 336



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 147/342 (42%), Gaps = 45/342 (13%)

Query: 39  DLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSN------ 92
           D + E  T+S   M     N L+MD+A RLF ++  P+ +  N MI G+ Q  +      
Sbjct: 260 DQMMERDTISWNTMISGYVNMLDMDEASRLFCEMPNPDIFSWNKMIAGHAQIGDLDRVND 319

Query: 93  -----PQK--------------------ALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
                PQK                    A+  ++ M+ +G   D +T   VL     ++ 
Sbjct: 320 LFGRMPQKNLVSWNSVITGYEKNDDYIGAIKIFIQMQVEGEKPDRHTLSSVLSVSAGIVD 379

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI-KDLVSWNLVLR 186
           L  G +IH  V K   + DV + N LI MYS+CG +  A ++F+  ++ K+++SWN ++ 
Sbjct: 380 LQLGMQIHQLVTKT-VIPDVPINNALITMYSRCGAIIEAGTIFDEVKLQKEVISWNAMIG 438

Query: 187 GFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK---KKGDISSARILFEHMPIK---- 239
           G+   G   +A EVF  M   D     I            G +   R +FE M  +    
Sbjct: 439 GYASHGYAVEALEVFKLMKSFDVRPTHITFISVLHACAHAGLVEEGREIFESMADEFGIE 498

Query: 240 -DLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
             +  + S++D  ++ G L  A  L N MP E +   W  ++     H N  E   +  E
Sbjct: 499 PSVEHYASLVDIMSRHGQLEQALDLINSMPFEPDKAVWGALLSAAKVH-NKIEVARVAAE 557

Query: 298 MLCQGVRPDVISVMGAI-SACAQVGALDLGKWIHVFMKRSRI 338
            L + + PD  +    + +  A VG  D    + + M+RS I
Sbjct: 558 ALIR-LEPDSSAPYVLLYNMYADVGQWDSAAEVRIMMERSNI 598


>gi|125540362|gb|EAY86757.1| hypothetical protein OsI_08137 [Oryza sativa Indica Group]
          Length = 493

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 170/477 (35%), Positives = 266/477 (55%), Gaps = 34/477 (7%)

Query: 78  YMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGE 137
           Y  N +IR  +  S     L F +N +   LL D+ +  F L  C  L      + +H  
Sbjct: 40  YSVNCLIRAASAPSASALLLRFLLNHR---LLPDHLSLSFSLHPCSRLPSHPVASVVHSL 96

Query: 138 VVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKA 197
            V++G   DV+VVN     Y     +  A  +F  +                       +
Sbjct: 97  AVRLGHARDVYVVNAAASAYFAAADVASAERLFSEA-----------------------S 133

Query: 198 REVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDL 257
           R+V       D ++W+ M+ G+    GD+  AR  F+ MP K+++SWN+M+  YA+ G L
Sbjct: 134 RDV------ADVVTWTTMVTGH-ANAGDVERARWFFDAMPEKNVVSWNTMLGAYARAGML 186

Query: 258 VAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISAC 317
             A++LF+ MP RN  +W  MI G  Q  + +EAL +F +M+  GV P+  +++  +SAC
Sbjct: 187 PKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMVACGVVPNEPALVSTVSAC 246

Query: 318 AQVGALDLGKWIHVFMKRS-RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISY 376
            Q+  ++ G W+H + +R     M  ++ TA++DMY KCGS+ +A R+F +M  +N+ S+
Sbjct: 247 TQLRWMEHGTWVHGYAERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAAMPVRNIYSW 306

Query: 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436
           N MIAGL MNG   +AL  F +M+  G+  +D+ F+G+L ACSHSGL  EG  +F  M  
Sbjct: 307 NSMIAGLAMNGSERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEGRWLFYKMVN 366

Query: 437 HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAE 496
           H GI+P  EHY  +VDLL R+G + +A++ V+SMP++P+  LWG L  AC+ H  V L E
Sbjct: 367 HFGIQPVPEHYGLMVDLLGRSGHVREAVDFVKSMPVEPHPGLWGALAGACKIHGEVELGE 426

Query: 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEID 553
            V + L+EL+      Y+LLSNIYA +  W+    +R++++ RK+ K TG +++  D
Sbjct: 427 EVAKKLIELEPQHGSRYILLSNIYATSNRWDDMANVRRILKDRKVPKGTGNAIVGND 483



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 117/272 (43%), Gaps = 37/272 (13%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           + +A +LF+++   N     +MI G  QS + ++AL  + +M   G++ +       + A
Sbjct: 186 LPKARKLFDRMPSRNAATWGSMITGLLQSDHCEEALRVFSDMVACGVVPNEPALVSTVSA 245

Query: 122 CGVLMGLVEGTEIHGEVVK-MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           C  L  +  GT +HG   + +       +   ++ MY KCG +  A  VF    ++++ S
Sbjct: 246 CTQLRWMEHGTWVHGYAERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAAMPVRNIYS 305

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILF--EHMPI 238
           WN ++ G    G   +A  +F          W + + G R    DI+   +L    H  +
Sbjct: 306 WNSMIAGLAMNGSERQALSLF----------WKMQLAGVRPN--DITFIGLLSACSHSGL 353

Query: 239 KDLISW--NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
            D   W    M++ +               +PE     + +M+D   + G+ +EA+   +
Sbjct: 354 VDEGRWLFYKMVNHFG-----------IQPVPEH----YGLMVDLLGRSGHVREAVDFVK 398

Query: 297 EMLCQGVRPDVISVMGAIS-ACAQVGALDLGK 327
            M    V P    + GA++ AC   G ++LG+
Sbjct: 399 SM---PVEPHP-GLWGALAGACKIHGEVELGE 426


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 181/547 (33%), Positives = 302/547 (55%), Gaps = 69/547 (12%)

Query: 28  ILQILAQLTTNDLIT-EPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ-PNTYMHNTMIR 85
           + +I AQ+  + + + +P  ++   + ++S +  N+  +  +FN     PN + +N +++
Sbjct: 40  LFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHG-NLRHSVLIFNHFLSFPNIFAYNALLK 98

Query: 86  GYTQSSNPQKALSFYVN--MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGF 143
            ++Q +     +S++ N  +       D YT+  VLKAC  L  ++EG ++H  V K   
Sbjct: 99  AFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKY-- 156

Query: 144 LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDE 203
                               GC  ++F  + + DL         + + G    A+++FDE
Sbjct: 157 --------------------GCESNLFVRNSLVDL---------YFKVGCNCIAQKLFDE 187

Query: 204 MPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQL 263
           M                                 ++D++SWN++I GY   G +  A+ +
Sbjct: 188 MV--------------------------------VRDVVSWNTLISGYCFSGMVDKARMV 215

Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGA 322
           F+ M E+N+ SWS MI GYA++    +A+ LFR+M  +G + P+ ++++  +SACA +GA
Sbjct: 216 FDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGA 275

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
           LDLGKWIH F++R++I + + +  AL DMY KCG + EA+ +F+ M +++VIS++++I G
Sbjct: 276 LDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMG 335

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
           L M G+  EA   FA+M  +G+  +D+ F+G+L AC+H+GL  +G   F  M +  GI P
Sbjct: 336 LAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITP 395

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
           K+EHY C+VDLLSRAG L+QA +++ SMPM+PN+ +WG LL  CR +++    E VV  +
Sbjct: 396 KIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRI 455

Query: 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
           +EL ++  G  V L+N+YA  G  + A   R  MR  K  K  G S IEI+ ++ EF  G
Sbjct: 456 LELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMG 515

Query: 563 EIFDVQS 569
           +    QS
Sbjct: 516 DSSHPQS 522


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 167/468 (35%), Positives = 277/468 (59%), Gaps = 10/468 (2%)

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           +L+AC     +  G  +HG  VK          N L+ MY+KCG +  A  VF+   ++ 
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILF 233
           +V+W  ++  +   G   +A  +F EM ++    D  + + ++       G + + + + 
Sbjct: 64  VVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHAC-ACNGSLENGKDVH 122

Query: 234 EHMPIKDLIS----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
            ++   D+ S     N+++D YAK G +  A  +F EMP +++ SW+ MI GY+++  P 
Sbjct: 123 NYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPN 182

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           EAL LF +M+ + ++PD  ++   + ACA + +LD GK +H  + R+    D  V  AL+
Sbjct: 183 EALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALV 241

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           DMY+KCG    AR +F  +  K++I++ VMIAG GM+GFG  A+  F +M   GI  D++
Sbjct: 242 DMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEV 301

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            F+ +L ACSHSGL  EG+R F  M+  C ++PKLEHY+C+VDLL+R+G+L  A   ++S
Sbjct: 302 SFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKS 361

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           MP++P+  +WG LL  CR H +V LAE V E + EL+ ++ G YVLL+N YA+A  WE  
Sbjct: 362 MPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEV 421

Query: 530 LRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
            ++R+ + +R +KK  G S IE+   +  F++G     Q++++E++++
Sbjct: 422 KKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLK 469



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 149/315 (47%), Gaps = 9/315 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A  +F+ +         ++I  Y +     +A+  +  M R+G+  D +T   VL A
Sbjct: 49  LDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHA 108

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C     L  G ++H  + +     ++FV N L+ MY+KCG M  A SVF    +KD++SW
Sbjct: 109 CACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISW 168

Query: 182 NLVLRGFVECGEMGKAREVFDEMP---QKDAISWSIMIDGYRK----KKGDISSARILFE 234
           N ++ G+ +     +A  +F +M    + D  + + ++          +G      IL  
Sbjct: 169 NTMIGGYSKNSLPNEALSLFGDMVLEMKPDGTTLACILPACASLASLDRGKEVHGHILRN 228

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
                D    N+++D Y K G  V A+ LF+ +P +++ +W++MI GY  HG    A+  
Sbjct: 229 GF-FSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITT 287

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYM 353
           F EM   G+ PD +S +  + AC+  G LD G ++ +V      +   +     ++D+  
Sbjct: 288 FNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLA 347

Query: 354 KCGSLDEARRIFYSM 368
           + G L  A +   SM
Sbjct: 348 RSGKLAMAYKFIKSM 362



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 125/271 (46%), Gaps = 28/271 (10%)

Query: 38  NDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKAL 97
           ND+ +  F  + L+       +  M+ A  +F ++   +    NTMI GY+++S P +AL
Sbjct: 128 NDMQSNIFVCNALMDMYAKCGS--MEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEAL 185

Query: 98  SFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMY 157
           S + +M  + +  D  T   +L AC  L  L  G E+HG +++ GF  D  V N L+ MY
Sbjct: 186 SLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMY 244

Query: 158 SKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ----KDAISW- 212
            KCG    AR +F+    KDL++W +++ G+   G    A   F+EM Q     D +S+ 
Sbjct: 245 VKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFI 304

Query: 213 ---------SIMIDGYR--KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQ 261
                     ++ +G+R      D  + +   EH        +  ++D  A+ G L  A 
Sbjct: 305 SILYACSHSGLLDEGWRFFNVMQDECNVKPKLEH--------YACIVDLLARSGKLAMAY 356

Query: 262 QLFNEMP-ERNVFSWSIMIDGYAQHGNPKEA 291
           +    MP E +   W  ++ G   H + K A
Sbjct: 357 KFIKSMPIEPDATIWGALLSGCRIHHDVKLA 387


>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
 gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
          Length = 500

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 155/363 (42%), Positives = 230/363 (63%), Gaps = 1/363 (0%)

Query: 216 IDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
           I G   K+G +  AR +F++M  K+ ++WN+MIDGY + G +  A ++F++MPER++ SW
Sbjct: 115 IIGMYSKRGRVKKARCVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISW 174

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
           + MI+G+   G  +EAL  FREM   GV+PD ++++ A++AC  +GAL  G W+H ++  
Sbjct: 175 TAMINGFVNKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMS 234

Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
                ++ V  +LID+Y +CG ++ AR++F  M K+ V+S+N +I G   NG   E+L  
Sbjct: 235 QDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVY 294

Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           F +M+ E    D + F G L ACSH GL  EG R FQ M     I P++EHY CLVDL S
Sbjct: 295 FRKMQEERFKPDAVTFTGALTACSHVGLVEEGLRYFQIMISDYRISPRIEHYGCLVDLYS 354

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT-LAEVVVEGLVELKADDCGLYV 514
           RAG LE AL +V+SMPMKPN  + G+LL ACRNH N T LAE +++ L +L       YV
Sbjct: 355 RAGRLEDALKLVQSMPMKPNEVVIGSLLAACRNHGNNTVLAEKLMKHLTDLNVKSHSNYV 414

Query: 515 LLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELEL 574
           +LSN+YA  G WE A ++R+ M+   +KK+ G S IEID     F++G+   V++  +  
Sbjct: 415 ILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDCTHVFMAGDSAHVETTNICE 474

Query: 575 VIQ 577
           V++
Sbjct: 475 VLK 477



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/346 (29%), Positives = 175/346 (50%), Gaps = 44/346 (12%)

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
            NQ    NT    + I   T++    +A   + +M+  G+  ++ T+  +L  CG     
Sbjct: 28  LNQSTSENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGCGDFPSG 87

Query: 129 VE--GTEIHGEVVKMGFLCD-VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL 185
            E  G  +HG   K+G   + V V   +IGMYSK G +  AR VF+  E K+ V+WN ++
Sbjct: 88  SEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSVTWNTMI 147

Query: 186 RGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK----DL 241
            G++  G++  A ++FD+MP++D ISW+ MI+G+   KG    A   F  M I     D 
Sbjct: 148 DGYMRSGQVDNAAKMFDKMPERDLISWTAMINGF-VNKGFHEEALAWFREMQISGVKPDY 206

Query: 242 IS------------------W-----------------NSMIDGYAKIGDLVAAQQLFNE 266
           ++                  W                 NS+ID Y + G +  A+Q+F++
Sbjct: 207 VAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDK 266

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326
           M +R V SW+ +I G+A +GN  E+L  FR+M  +  +PD ++  GA++AC+ VG ++ G
Sbjct: 267 MEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGALTACSHVGLVEEG 326

Query: 327 -KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
            ++  + +   RI+  +     L+D+Y + G L++A ++  SM  K
Sbjct: 327 LRYFQIMISDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMK 372



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 113/263 (42%), Gaps = 46/263 (17%)

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV- 320
           Q  N+    N  SW+  I    ++G   EA   F +M   GV P+ I+ +  +S C    
Sbjct: 26  QRLNQSTSENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGCGDFP 85

Query: 321 -GALDLGKWIH---------------------VFMKRSRIT-----------MDMIVQTA 347
            G+  LG  +H                     ++ KR R+             + +    
Sbjct: 86  SGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSVTWNT 145

Query: 348 LIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407
           +ID YM+ G +D A ++F  M ++++IS+  MI G    GF EEAL  F +M+  G+  D
Sbjct: 146 MIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQISGVKPD 205

Query: 408 DLIFLGVLIACSHSGLATEG-----YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
            +  +  L AC++ G  + G     Y + Q  K +  +       + L+DL  R G +E 
Sbjct: 206 YVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVRVS------NSLIDLYCRCGCVEF 259

Query: 463 ALNIVESMPMKPNLALWGTLLLA 485
           A  + + M  K  +  W ++++ 
Sbjct: 260 ARQVFDKME-KRTVVSWNSVIVG 281



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 114/243 (46%), Gaps = 25/243 (10%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A ++F+++ + +      MI G+      ++AL+++  M+  G+  D       L A
Sbjct: 156 VDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQISGVKPDYVAIIAALNA 215

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G  +H  V+   F  +V V N LI +Y +CG +  AR VF+  E + +VSW
Sbjct: 216 CTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSW 275

Query: 182 NLVLRGFVECGEMGKA----REVFDEMPQKDAISWS----------IMIDGYRKKKGDIS 227
           N V+ GF   G   ++    R++ +E  + DA++++          ++ +G R  +  IS
Sbjct: 276 NSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGALTACSHVGLVEEGLRYFQIMIS 335

Query: 228 SARI--LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQ 284
             RI    EH        +  ++D Y++ G L  A +L   MP + N      ++     
Sbjct: 336 DYRISPRIEH--------YGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACRN 387

Query: 285 HGN 287
           HGN
Sbjct: 388 HGN 390


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 169/525 (32%), Positives = 285/525 (54%), Gaps = 41/525 (7%)

Query: 39  DLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALS 98
           D  ++  +L++ + S       +++ A  +F ++    T   NTM+ GYT+ +       
Sbjct: 68  DTASDVVSLNKTIASFV--RACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAG------ 119

Query: 99  FYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYS 158
               +K    L D    P                             D    N ++  Y 
Sbjct: 120 ---KVKEAHELFDKIPEP-----------------------------DSVSYNIMLVCYL 147

Query: 159 KCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDG 218
           +   +  A + F    +KD+ SWN ++ GF + G+M KA ++F  MP+K+ +SWS MI G
Sbjct: 148 RSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISG 207

Query: 219 YRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM 278
           Y  + GD+ +A  L++++ +K ++   +M+ GY K G +  A+++F  M  +N+ +W+ M
Sbjct: 208 Y-VEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSM 266

Query: 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338
           I GY ++   ++ L +F+ M+   VRP+ +S+   +  C+ + AL LG+ +H  + +S +
Sbjct: 267 IAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPL 326

Query: 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
           + D    T+LI MY KCG LD A ++F  M +K+VI++N MI+G   +G G +AL  F +
Sbjct: 327 SKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDK 386

Query: 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458
           M    +  D + F+ V++AC+H+G    G + F+SMK+  GIE K  HY+C++DLL RAG
Sbjct: 387 MRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAG 446

Query: 459 ELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSN 518
            L++A+++++ MP  P+ A++GTLL ACR H+N+ LAE     L+ L       YV L+N
Sbjct: 447 RLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLAN 506

Query: 519 IYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           IYA    W+   ++RKMM++  + K  G S IEI     EF S +
Sbjct: 507 IYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSD 551


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 179/523 (34%), Positives = 290/523 (55%), Gaps = 9/523 (1%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            A  +F+++ + +    N MI GY ++    + L  +  M+   +  D  T   V+ AC 
Sbjct: 248 SARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACE 307

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            L     G E+HG V+K GF+ +V V N LI M+S  G    A  VF   E KDLVSW  
Sbjct: 308 ALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTA 367

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK---KGDISSARILFEHMPIKD 240
           ++ G+ + G   KA E +  M  +  +   I I          G +    +L E      
Sbjct: 368 MISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTG 427

Query: 241 LISW----NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
           L S+    NS+ID Y+K   +  A ++F+ +P +NV SW+ +I G   +    EAL+ F+
Sbjct: 428 LTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQ 487

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
           +M+   ++P+ ++++  +SACA++GAL  GK IH    R+ +  D  +  AL+DMY++CG
Sbjct: 488 QMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCG 546

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
            ++ A   F S  +K+V S+N+++ G    G G  A++ F +M    +  D++ F  +L 
Sbjct: 547 RMEPAWNQFNS-CEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLC 605

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
           ACS SG+ T+G   F+SM+    I P L+HY+ +VDLL RAG LE A   ++ MP+ P+ 
Sbjct: 606 ACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDP 665

Query: 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
           A+WG LL ACR +QNV L E+  + + E+     G Y+LL N+YAD+G W+   R+RK+M
Sbjct: 666 AIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIM 725

Query: 537 RKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSF 579
           R+ ++  + G S +E+ G +  F++G+ F  Q +E+  V++ F
Sbjct: 726 RENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGF 768



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 144/443 (32%), Positives = 229/443 (51%), Gaps = 37/443 (8%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++ +A  +F ++ + + +  N ++ GY ++    +AL+ Y  M   G+  D YT+P VL+
Sbjct: 144 DLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLR 203

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            CG L  L  G E+H  V++ GF  DV VVN LI MY KCG +  AR VF+    +D +S
Sbjct: 204 TCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRIS 263

Query: 181 WNLVLRGFVE---CGEMGK----AREVF---DEMPQKDAIS---------WSIMIDGYRK 221
           WN ++ G+ E   C E  +     RE F   D M     IS             + GY  
Sbjct: 264 WNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVI 323

Query: 222 KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           K G ++   +             NS+I  ++ +G    A+ +F++M  +++ SW+ MI G
Sbjct: 324 KTGFVAEVSVN------------NSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISG 371

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
           Y ++G P++A+  +  M  +GV PD I++   +SACA +G LD G  +H F  R+ +T  
Sbjct: 372 YEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSY 431

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
           +IV  +LIDMY KC  +D+A  +F+ +  KNVIS+  +I GL +N    EAL  F QM  
Sbjct: 432 VIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMIL 491

Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIF-QSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460
              P + +  + VL AC+  G  + G  I   +++   G +  L   + L+D+  R G +
Sbjct: 492 SLKP-NSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLP--NALLDMYVRCGRM 548

Query: 461 EQALNIVESMPMKPNLALWGTLL 483
           E A N   S   + ++A W  LL
Sbjct: 549 EPAWNQFNS--CEKDVASWNILL 569



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 224/449 (49%), Gaps = 18/449 (4%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N++I       + +KAL    +M+   + V+  TY  +L+ C       EG+ +H  V K
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
                 V + N L+ M+ + G +  A  VF     +DL SWN+++ G+ + G   +A  +
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNL 182

Query: 201 FDEM----PQKDAISWSIMI-------DGYRKKKGDISSARILFEHMPIKDLISWNSMID 249
           +  M     + D  ++  ++       D  R ++  +   R  FE     D+   N++I 
Sbjct: 183 YHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFE----SDVDVVNALIT 238

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
            Y K GD+ +A+ +F+ MP R+  SW+ MI GY ++    E L LF  M    V PD+++
Sbjct: 239 MYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMT 298

Query: 310 VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369
           +   ISAC  +G   LG+ +H ++ ++    ++ V  +LI M+   G  DEA  +F  M 
Sbjct: 299 MTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKME 358

Query: 370 KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR 429
            K+++S+  MI+G   NG  E+A++ +  ME EG+  D++    VL AC+  GL  +G  
Sbjct: 359 FKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIM 418

Query: 430 IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR-N 488
           + +   R  G+   +   + L+D+ S+   +++AL +   +P K N+  W +++L  R N
Sbjct: 419 LHEFADR-TGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNK-NVISWTSIILGLRLN 476

Query: 489 HQNVTLAEVVVEGLVELKADDCGLYVLLS 517
           +++        + ++ LK +   L  +LS
Sbjct: 477 YRSFEALFFFQQMILSLKPNSVTLVSVLS 505


>gi|242083462|ref|XP_002442156.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
 gi|241942849|gb|EES15994.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
          Length = 557

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 183/572 (31%), Positives = 294/572 (51%), Gaps = 46/572 (8%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           L  L + + +     Q+ AQL    L         L+ S  SP       A  +F+    
Sbjct: 16  LAGLARRATSPAAARQLQAQLLVRGLPLPARAAVALIASSHSPR-----HARAVFDSAVP 70

Query: 75  P---NTYMHNTMIRGYTQS-----SNPQKALSFYVNMKRKGLLVDN-YTYPFVLKACGVL 125
               N Y+    I  Y +      S  + AL+ +  M R+G+   N +T   V++ C  L
Sbjct: 71  AASENVYLWTATIAAYARHASSSLSAAEGALALFRLMLRRGVPRPNAFTASSVVRCCSAL 130

Query: 126 MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL 185
             + EG ++HG +   G                +  H+G A     GS            
Sbjct: 131 RAVREGIQVHGFLFSAGL--------------GRASHVGAALVDMYGS------------ 164

Query: 186 RGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWN 245
                 G +  AR VFDEMP  + +  + M+  Y  + GD+ + R +F+ M  +D ISWN
Sbjct: 165 -----LGRVADARRVFDEMPSTNVVLGNTMVACY-VRAGDVEAGRDVFDRMAERDPISWN 218

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           +++ GY + G+   A+ LF EMP+RNV SW+++I   +Q G   +A+ +F  M     +P
Sbjct: 219 TLMMGYLRQGEAGVARDLFEEMPDRNVNSWNMVIAACSQEGLWADAVEVFNRMRLARFQP 278

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D  ++   +SACAQ+G+L +   +H  +++  + M+  V  +LIDMY KCGS+ +A  +F
Sbjct: 279 DPATMAVLMSACAQLGSLSIASQVHGILRKGCVEMNFHVLNSLIDMYAKCGSVSQAHLLF 338

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
                K+ +SYNVMI  L  +G G +AL+ F +M  EG+  D + FLGVL AC+H+GL  
Sbjct: 339 VETRLKDTVSYNVMICALAQHGHGRDALQIFDEMSEEGLQPDAVTFLGVLSACAHAGLVH 398

Query: 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
           +G   F+SM+ +  IE   +HY+C+VDL  RAG +E+A  +  +MP+KP+  +WG L+ A
Sbjct: 399 DGKFYFESMRTNYAIEQSPDHYACMVDLYGRAGLIEEAYQLARAMPVKPHAGVWGALINA 458

Query: 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
           CR H NV + +V    L+ ++  + G YVLL+N  A    W+    + + MR + I+K  
Sbjct: 459 CRKHCNVEVGKVAARELIAIEPGNPGTYVLLANTLARGQQWDFVETVWQSMRGKGIEKTA 518

Query: 546 GRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           G S +E+D  + EF+ GE     S+E+  +++
Sbjct: 519 GCSWLEVDRVVHEFLMGESSHPNSDEIYCILE 550


>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
          Length = 446

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 159/410 (38%), Positives = 250/410 (60%), Gaps = 13/410 (3%)

Query: 160 CGHMGCARS-----VFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ--KDAISW 212
           CG++G   S     +FE   I+  V+W  ++ GF   G+   AR  FD++P   ++ ++W
Sbjct: 39  CGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTW 98

Query: 213 SIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
           ++M+DGY  +  ++ +AR +FE MP ++  +W+SMI GY K G++  A+ +F+ +P RN+
Sbjct: 99  TVMVDGY-ARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNL 157

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
            +W+ +I GYAQ+G  +EAL  F +M  +G  PD +++   +SAC+Q+G LD GK IH  
Sbjct: 158 VNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHM 217

Query: 333 MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
           M    I ++  V   L+DMY KCG L  AR IF  M  +N   +N MI+G  ++G  +EA
Sbjct: 218 MNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEA 277

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
           L+ F +ME      D++ FL VL AC+H G    G  IF  M+++ G+   ++HY CL+D
Sbjct: 278 LEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEKY-GLTTGIKHYGCLID 336

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD---D 509
           LL RAG +++A ++++ MP+KPN  +WG LL ACR H ++ +A+ VVE +V++ ++    
Sbjct: 337 LLGRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVHLDMEMADRVVEEIVKVDSNISSG 396

Query: 510 C-GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKE 558
           C   YVLLSNIYA +  WE A ++R  M  +  +K +G S I    N  E
Sbjct: 397 CDSHYVLLSNIYAASDRWEKAEKMRMEMANKGFQKTSGCSSIMPGNNTHE 446



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 137/267 (51%), Gaps = 35/267 (13%)

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
           S++  YAK G++V ++++F+ MPERN  +W+ MI GY  +G+ K A+ LF +M    +R 
Sbjct: 5   SLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKM---SIRT 61

Query: 306 DVISVMGAISACAQVGALDLGK---------------WI--------HVFMKRSRITMDM 342
             ++ +  I   A+ G  +  +               W         +  M+ +R   + 
Sbjct: 62  -AVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEG 120

Query: 343 IVQ------TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF 396
           + Q      +++I  Y K G++ EAR IF  +  +N++++N +I+G   NGF EEAL+ F
Sbjct: 121 MPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAF 180

Query: 397 AQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456
            +M+ EG   D++    VL ACS  GL   G +I   M  H GI+      + LVD+ ++
Sbjct: 181 GKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKI-HHMMNHKGIKLNQFVLNGLVDMYAK 239

Query: 457 AGELEQALNIVESMPMKPNLALWGTLL 483
            G+L  A  I E M  + N A W +++
Sbjct: 240 CGDLANARLIFEGMAHR-NRACWNSMI 265



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 161/368 (43%), Gaps = 64/368 (17%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N+  + ++F+ + + N    N MI GY  + + + A+  +  M               ++
Sbjct: 15  NVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMS--------------IR 60

Query: 121 ACGVLMGLVEGTEIHG--EVVKMGF------LCDVFVVNGLIGMYSKCGHMGCARSVFEG 172
                + +++G    G  E  +  F      L +V     ++  Y++   M  AR VFEG
Sbjct: 61  TAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEG 120

Query: 173 SEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK----------- 221
              ++  +W+ ++ G+ + G + +AR +FD +P ++ ++W+ +I GY +           
Sbjct: 121 MPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAF 180

Query: 222 --------KKGDISSARIL------------------FEHMPIK-DLISWNSMIDGYAKI 254
                   +  +++ A +L                    H  IK +    N ++D YAK 
Sbjct: 181 GKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKC 240

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
           GDL  A+ +F  M  RN   W+ MI G+A HG  KEAL  F  M      PD I+ +  +
Sbjct: 241 GDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVL 300

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
           SACA  G ++ G  I   M++  +T  +     LID+  + G + EA    Y + K+  +
Sbjct: 301 SACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEA----YDLIKRMPV 356

Query: 375 SYNVMIAG 382
             N ++ G
Sbjct: 357 KPNDVVWG 364



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 109/234 (46%), Gaps = 10/234 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N+ +A  +F++I   N    N++I GY Q+   ++AL  +  M+ +G   D  T   VL 
Sbjct: 141 NVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLS 200

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L  G +IH  +   G   + FV+NGL+ MY+KCG +  AR +FEG   ++   
Sbjct: 201 ACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRAC 260

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHM 236
           WN ++ GF   G+  +A E F  M       D I++  ++       G +++   +F  M
Sbjct: 261 WNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSAC-AHGGFVNAGLEIFSRM 319

Query: 237 PIKDLIS----WNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQH 285
               L +    +  +ID   + G +  A  L   MP + N   W  ++     H
Sbjct: 320 EKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVH 373



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
           ++ T+L+ MY KCG++ ++R++F  M ++N +++N MI G   NG  + A+  F +M   
Sbjct: 1   MIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSI- 59

Query: 403 GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
              +  + ++ ++   + SG      R F  +         +  ++ +VD  +R  E+E 
Sbjct: 60  ---RTAVTWIEMIDGFARSGDTETARRFFDDVPSEL---RNVVTWTVMVDGYARNAEMEA 113

Query: 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVE 500
           A  + E MP + N   W +++       NV  A  + +
Sbjct: 114 AREVFEGMPQR-NFFAWSSMISGYCKKGNVKEARSIFD 150


>gi|326489701|dbj|BAK01831.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 484

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 147/341 (43%), Positives = 224/341 (65%)

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           LF  M ++ L+++N+MI G  + G + AA+++F+ MPE +  SW+ +IDG  ++G   EA
Sbjct: 128 LFGSMTVRSLVTYNTMITGLMRNGLVAAAREVFDGMPEPDKVSWTALIDGCVKNGRHDEA 187

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           +  F  ML  GV PD ++++ AISACA+VGAL LG W+H  + R R+  ++ +  +LIDM
Sbjct: 188 IDCFHAMLLDGVEPDYVTLVAAISACAEVGALGLGMWVHRLVTRERLEGNIRIANSLIDM 247

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y +CG ++ AR++F SM  + V+S+N MI G   NG   +A++ F  M  +G   D + F
Sbjct: 248 YARCGQVEFARQVFDSMRNRTVVSWNSMIVGFAANGRCTDAIEHFEAMRRKGFRPDAVTF 307

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
            GVL ACSH+GL  EG R +++M+   GI  ++EHY C+VDLL RAG L +A+++V +MP
Sbjct: 308 TGVLTACSHAGLTDEGLRYYKAMRAEHGITARMEHYGCVVDLLGRAGRLGEAMSVVATMP 367

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           M+PN  + G LL  CR H +V +AE +++ L+E        YVLLSNIYA  G W+ A +
Sbjct: 368 MRPNEVVLGALLAGCRMHGDVDMAEQLMQHLLEQDPGGDSNYVLLSNIYAATGKWDGAGK 427

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           +R +M+ R +KK  GRS +EIDG++ EFV G+    Q++E+
Sbjct: 428 VRGLMKARGVKKRPGRSAVEIDGDVHEFVCGDRSHPQADEV 468



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 126/273 (46%), Gaps = 44/273 (16%)

Query: 156 MYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIM 215
           + S+  H+  A  +F    ++ LV++N ++ G +  G +  AREVFD MP+ D +SW+ +
Sbjct: 117 LASRLPHL--ALQLFGSMTVRSLVTYNTMITGLMRNGLVAAAREVFDGMPEPDKVSWTAL 174

Query: 216 IDGYRKKKGDISSARILFEHMPI----KDLIS------------------W--------- 244
           IDG   K G    A   F  M +     D ++                  W         
Sbjct: 175 IDGC-VKNGRHDEAIDCFHAMLLDGVEPDYVTLVAAISACAEVGALGLGMWVHRLVTRER 233

Query: 245 --------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
                   NS+ID YA+ G +  A+Q+F+ M  R V SW+ MI G+A +G   +A+  F 
Sbjct: 234 LEGNIRIANSLIDMYARCGQVEFARQVFDSMRNRTVVSWNSMIVGFAANGRCTDAIEHFE 293

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKC 355
            M  +G RPD ++  G ++AC+  G  D G ++         IT  M     ++D+  + 
Sbjct: 294 AMRRKGFRPDAVTFTGVLTACSHAGLTDEGLRYYKAMRAEHGITARMEHYGCVVDLLGRA 353

Query: 356 GSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG 387
           G L EA  +  +M  + N +    ++AG  M+G
Sbjct: 354 GRLGEAMSVVATMPMRPNEVVLGALLAGCRMHG 386



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 124/288 (43%), Gaps = 27/288 (9%)

Query: 29  LQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYT 88
           LQ+   +T   L+T    ++ L+      N L +  A  +F+ + +P+      +I G  
Sbjct: 126 LQLFGSMTVRSLVTYNTMITGLMR-----NGL-VAAAREVFDGMPEPDKVSWTALIDGCV 179

Query: 89  QSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF 148
           ++    +A+  +  M   G+  D  T    + AC  +  L  G  +H  V +     ++ 
Sbjct: 180 KNGRHDEAIDCFHAMLLDGVEPDYVTLVAAISACAEVGALGLGMWVHRLVTRERLEGNIR 239

Query: 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK- 207
           + N LI MY++CG +  AR VF+    + +VSWN ++ GF   G    A E F+ M +K 
Sbjct: 240 IANSLIDMYARCGQVEFARQVFDSMRNRTVVSWNSMIVGFAANGRCTDAIEHFEAMRRKG 299

Query: 208 ---DAISWSIMI----------DGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKI 254
              DA++++ ++          +G R  K       +  EH     +  +  ++D   + 
Sbjct: 300 FRPDAVTFTGVLTACSHAGLTDEGLRYYKA------MRAEHGITARMEHYGCVVDLLGRA 353

Query: 255 GDLVAAQQLFNEMPER-NVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
           G L  A  +   MP R N      ++ G   HG+   A  L + +L Q
Sbjct: 354 GRLGEAMSVVATMPMRPNEVVLGALLAGCRMHGDVDMAEQLMQHLLEQ 401



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 125/305 (40%), Gaps = 41/305 (13%)

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQ--GVRPDVISVMGAISACAQVGALDLGK- 327
           +V SW+  I   A+ G+          ML       P+ ++++  +SACA   +  L + 
Sbjct: 30  DVVSWTAAIARPAREGDLPATAAALSAMLSSPAAPAPNDVTLLTVLSACAGAPSSPLARP 89

Query: 328 --WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL-- 383
                  +        +++ T L   Y+       A ++F SMT +++++YN MI GL  
Sbjct: 90  LALSLHALAAKLFPSHLLLCTCLARFYLASRLPHLALQLFGSMTVRSLVTYNTMITGLMR 149

Query: 384 ------------GM-----------------NGFGEEALKCFAQMETEGIPKDDLIFLGV 414
                       GM                 NG  +EA+ CF  M  +G+  D +  +  
Sbjct: 150 NGLVAAAREVFDGMPEPDKVSWTALIDGCVKNGRHDEAIDCFHAMLLDGVEPDYVTLVAA 209

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           + AC+  G    G  + + + R   +E  +   + L+D+ +R G++E A  + +SM  + 
Sbjct: 210 ISACAEVGALGLGMWVHRLVTRE-RLEGNIRIANSLIDMYARCGQVEFARQVFDSMRNR- 267

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLSNIYADAGMWEHALRI 532
            +  W ++++    +   T A    E +     + D      +L+   + AG+ +  LR 
Sbjct: 268 TVVSWNSMIVGFAANGRCTDAIEHFEAMRRKGFRPDAVTFTGVLTAC-SHAGLTDEGLRY 326

Query: 533 RKMMR 537
            K MR
Sbjct: 327 YKAMR 331


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 181/547 (33%), Positives = 295/547 (53%), Gaps = 46/547 (8%)

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
           +  + Y+ NT+I  Y    N   A   +        ++D  ++  +L    ++  + E  
Sbjct: 157 FDSDVYIQNTLINMYAVCGNLSDARKVF----DGSSVLDMVSWNSMLAGYVLVGNVEEAK 212

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           +++  + +     +V   N +I ++ K G++  A  +F   + KDLVSW+ ++  + +  
Sbjct: 213 DVYDRMPER----NVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNE 268

Query: 193 EMGKAREVFDEMPQK-----DAISWSIM--------------IDGYRKKKG--------- 224
              +A  +F EM        + +  S++              + G   K G         
Sbjct: 269 MYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQN 328

Query: 225 ----------DISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
                     ++ +A+ LF      D ISWNSMI GY K G++  A+ LF+ MP+++  S
Sbjct: 329 ALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVS 388

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           WS MI GYAQ     E L LF+EM  +G +PD   ++  ISAC  + ALD GKWIH +++
Sbjct: 389 WSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIR 448

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
           ++ + +++I+ T LI+MYMK G +++A  +F  + +K V ++N +I GL MNG  +++LK
Sbjct: 449 KNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLK 508

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
            F++M+  G+  +++ F+ VL AC H GL  EG+R F SM +   I P ++HY C+VDLL
Sbjct: 509 TFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLL 568

Query: 455 SRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYV 514
            RAG L++A  ++ESMPM P+++ WG LL AC+ + +    E +   LVEL  D  G  V
Sbjct: 569 GRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNV 628

Query: 515 LLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELEL 574
           LLSNIYA  G W   L +R MMR+  + K  G S+IE  G + EF++G+    Q+E +E 
Sbjct: 629 LLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEH 688

Query: 575 VIQSFVK 581
           ++    K
Sbjct: 689 MLDEMAK 695



 Score =  246 bits (629), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 157/521 (30%), Positives = 267/521 (51%), Gaps = 72/521 (13%)

Query: 2   KTLAAAKFSLKNPLVSL------LQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLT 55
           K      F+LK P ++L      LQ  +      QIL+Q+  +    + F  S+LL   T
Sbjct: 11  KPFKIPTFTLK-PTLTLPILETHLQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFST 69

Query: 56  SPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTY 115
               +N++Q+ ++F+ I  PN ++ NTM++GY Q ++P KA+  Y  M    +  DNYTY
Sbjct: 70  ELPFININQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTY 129

Query: 116 PFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI 175
           P + ++C + +   +G  I   V+K+GF  DV++ N LI MY+ CG++  AR VF+GS +
Sbjct: 130 PILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSV 189

Query: 176 KDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEH 235
            D+VSWN +L G+V  G + +A++V+D MP+++ I+ + MI  +  KKG++  A  LF  
Sbjct: 190 LDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLF-GKKGNVEEACKLFNE 248

Query: 236 MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
           M  KDL+SW+++I  Y +           NEM E                    EAL LF
Sbjct: 249 MKQKDLVSWSALISCYEQ-----------NEMYE--------------------EALILF 277

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM---- 351
           +EM   G+  D + V+  +SAC+++  +  GK +H  + +  I   + +Q ALI M    
Sbjct: 278 KEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSC 337

Query: 352 ---------------------------YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
                                      Y+KCG +++AR +F SM  K+ +S++ MI+G  
Sbjct: 338 EEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYA 397

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444
                 E L  F +M+ EG   D+ I + V+ AC+H     +G  I   ++++ G++  +
Sbjct: 398 QQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKN-GLKINI 456

Query: 445 EHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
              + L+++  + G +E AL + + +  K  ++ W  L+L 
Sbjct: 457 ILGTTLINMYMKLGCVEDALEVFKGLEEK-GVSTWNALILG 496



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 134/308 (43%), Gaps = 15/308 (4%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +++A  LF+ +   +    + MI GY Q     + L  +  M+ +G   D      V+ A
Sbjct: 371 IEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISA 430

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L +G  IH  + K G   ++ +   LI MY K G +  A  VF+G E K + +W
Sbjct: 431 CTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTW 490

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRK----KKGDISSARILF 233
           N ++ G    G + K+ + F EM +     + I++  ++   R      +G      ++ 
Sbjct: 491 NALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQ 550

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEAL 292
           EH    ++  +  M+D   + G L  A++L   MP   +V +W  ++    ++G+ +   
Sbjct: 551 EHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGE 610

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            + R+++      D  +V+ +    ++      G W+ V   R  +    +V+T    M 
Sbjct: 611 RIGRKLVELHPDHDGFNVLLSNIYASK------GNWVDVLEVRGMMRQHGVVKTPGCSMI 664

Query: 353 MKCGSLDE 360
              G + E
Sbjct: 665 EAHGRVHE 672


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 182/525 (34%), Positives = 298/525 (56%), Gaps = 16/525 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVN-MKRKGLLVDNYTYPFVLK 120
           +D A  +F+   + NT + NTMI GY Q++ P +A+  +V  M+ +  ++D+ T+   L 
Sbjct: 271 VDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALT 330

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           A   L  L  G ++H  ++K   +  V ++N +I MYS+CG +G +  VF     +D+V+
Sbjct: 331 AISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVT 390

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMID---GYRKKK-GDISSARIL 232
           WN ++  FV+ G   +   +   M ++    D+++ + ++      R ++ G  + A ++
Sbjct: 391 WNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLI 450

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF--NEMPERNVFSWSIMIDGYAQHGNPKE 290
              +  + + S+  +ID YAK G +  AQQLF  N   +R+  +W+ MI GY Q+G  +E
Sbjct: 451 RHGIQFEGMDSY--LIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEE 508

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
              +FR+M+ Q VRP+ +++   + AC  +G + LGK IH F  R  +  ++ V TAL+D
Sbjct: 509 GFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLD 568

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           MY K G++  A  +F    +KN ++Y  MI+  G +G GE AL  F  M   GI  D + 
Sbjct: 569 MYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVT 628

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
           F+ +L ACS++GL  EG RIFQSM+R   I+P  EHY C+ D+L R G + +A   V+ +
Sbjct: 629 FVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADMLGRVGRVVEAYEFVKGL 688

Query: 471 PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVELKADD--CGLYVLLSNIYADAGMWE 527
             + N   +WG+LL ACR H    L +VV   L+E++      G +VLLSNIYA  G W+
Sbjct: 689 GEEGNTFGIWGSLLGACRIHGEFELGKVVANKLLEMEKGSSLTGYHVLLSNIYAAEGNWD 748

Query: 528 HALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           +  R+RK MR++ + KE G S +E+ G++  F+S +    Q  E+
Sbjct: 749 NVDRVRKEMRQKGLMKEAGCSWVEVAGHVNCFMSRDHKHPQCAEI 793



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 115/431 (26%), Positives = 219/431 (50%), Gaps = 30/431 (6%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMK-RKGLLVDNYTYPFVLKAC 122
           QA  LF+ I +P T + NT+I G+  ++ P  AL FY  M+       D+YT+   LKAC
Sbjct: 55  QALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKAC 114

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC----GHMGCA---------RSV 169
                L  G  +H  V++  F     V N L+ MYS C     ++G A         R V
Sbjct: 115 AQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRV 174

Query: 170 FEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGD 225
           F+    +++V+WN ++  +V+   + +A ++F  M     +   +S+  +     +   D
Sbjct: 175 FDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMS-D 233

Query: 226 ISSARILFEHMP------IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMI 279
             +A +L+  +       + D    +S I  YA++G +  A+++F+   ERN   W+ MI
Sbjct: 234 YDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMI 293

Query: 280 DGYAQHGNPKEALYLFREML-CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338
            GY Q+  P EA+ LF +++  +    D ++ + A++A +Q+  L+LG+ +H ++ +S  
Sbjct: 294 GGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSST 353

Query: 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
            + +++  A+I MY +CGS+  + ++F +M +++V+++N M++    NG  +E L     
Sbjct: 354 ILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFA 413

Query: 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE-PKLEHYSCLVDLLSRA 457
           M+ +G   D +    +L   S+      G +    + RH GI+   ++ Y  L+D+ +++
Sbjct: 414 MQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRH-GIQFEGMDSY--LIDMYAKS 470

Query: 458 GELEQALNIVE 468
           G +  A  + E
Sbjct: 471 GLITTAQQLFE 481



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 123/498 (24%), Positives = 237/498 (47%), Gaps = 21/498 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N D   R+F+ + + N    NTMI  Y ++    +A   +  M R G+     ++  V  
Sbjct: 167 NCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFP 226

Query: 121 ACGVLMGLVEGTEIHGEVVKMG--FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDL 178
           A   +        ++G VVK+G  F+ D FVV+  I MY++ G +  AR +F+    ++ 
Sbjct: 227 AVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNT 286

Query: 179 VSWNLVLRGFVECGEMGKAREVFDEMPQK-----DAISWSIMIDGYRKKK----GDISSA 229
             WN ++ G+V+     +A ++F ++ +      D +++   +    + +    G    A
Sbjct: 287 EVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHA 346

Query: 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
            IL +   I  ++  N++I  Y++ G +  + ++F+ M ER+V +W+ M+  + Q+G   
Sbjct: 347 YIL-KSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDD 405

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           E L L   M  QG   D +++   +S  + + + ++GK  H ++ R  I  + +  + LI
Sbjct: 406 EGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGM-DSYLI 464

Query: 350 DMYMKCGSLDEARRIF--YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407
           DMY K G +  A+++F   S   ++  ++N MIAG   NG  EE    F +M  + +  +
Sbjct: 465 DMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPN 524

Query: 408 DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467
            +    +L AC+  G    G +I     R C +   +   + L+D+ S++G +  A N+ 
Sbjct: 525 AVTLASILPACNPMGTIGLGKQIHGFAIR-CFLNRNVFVGTALLDMYSKSGAITYAENVF 583

Query: 468 ESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLV--ELKADDCGLYVLLSNIYADAGM 525
               ++ N   + T++ +   H     A  +   ++   +K D      +LS   + AG+
Sbjct: 584 AE-TLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSAC-SYAGL 641

Query: 526 WEHALRI-RKMMRKRKIK 542
            +  LRI + M R+ KI+
Sbjct: 642 VDEGLRIFQSMEREYKIQ 659



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 157/353 (44%), Gaps = 34/353 (9%)

Query: 161 GHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG------KAREVFDEMPQKDAISWSI 214
           GH   A  +F+       V WN ++ GF+ C  M        AR      P+ D+ ++S 
Sbjct: 51  GHPHQALHLFDSIPRPTTVLWNTIIIGFI-CNNMPIDALLFYARMRASPSPKFDSYTFSS 109

Query: 215 MIDGYRK----KKGDISSARILFEHMPIKDLISWNSMIDGYAK-------IG-------- 255
            +    +    K G      +L  H     ++ +NS+++ Y+        +G        
Sbjct: 110 TLKACAQARSLKLGKALHCHVLRSHFGSSRIV-YNSLLNMYSTCLTEVPYLGTAYDFNNC 168

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
           DLV  +++F+ M +RNV +W+ MI  Y +     EA  +FR M+  G+RP  +S +    
Sbjct: 169 DLV--RRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFP 226

Query: 316 ACAQVGALDLGKWIHVFMKR--SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNV 373
           A  ++   D    ++  + +  S    D  V ++ I MY + G +D AR IF    ++N 
Sbjct: 227 AVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNT 286

Query: 374 ISYNVMIAGLGMNGFGEEALKCFAQ-METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
             +N MI G   N    EA+  F Q ME+E    DD+ FL  L A S       G ++  
Sbjct: 287 EVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHA 346

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
            + +   I  ++   + ++ + SR G +  +  +  +M ++ ++  W T++ A
Sbjct: 347 YILKSSTI-LQVVILNAIIVMYSRCGSIGTSFKVFSNM-LERDVVTWNTMVSA 397



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 85/209 (40%), Gaps = 43/209 (20%)

Query: 222 KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           ++G    A  LF+ +P    + WN++I G+           + N MP   +  ++ M   
Sbjct: 49  RQGHPHQALHLFDSIPRPTTVLWNTIIIGF-----------ICNNMPIDALLFYARM--- 94

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
                +PK   Y F   L                ACAQ  +L LGK +H  + RS     
Sbjct: 95  -RASPSPKFDSYTFSSTL---------------KACAQARSLKLGKALHCHVLRSHFGSS 138

Query: 342 MIVQTALIDMYMKC-------------GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
            IV  +L++MY  C              + D  RR+F +M K+NV+++N MI+       
Sbjct: 139 RIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTER 198

Query: 389 GEEALKCFAQMETEGIPKDDLIFLGVLIA 417
             EA K F  M   GI    + F+ V  A
Sbjct: 199 LIEAFKMFRTMMRMGIRPTPVSFVNVFPA 227


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 179/523 (34%), Positives = 290/523 (55%), Gaps = 9/523 (1%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            A  +F+++ + +    N MI GY ++    + L  +  M+   +  D  T   V+ AC 
Sbjct: 248 SARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACE 307

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            L     G E+HG V+K GF+ +V V N LI M+S  G    A  VF   E KDLVSW  
Sbjct: 308 ALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTA 367

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK---KGDISSARILFEHMPIKD 240
           ++ G+ + G   KA E +  M  +  +   I I          G +    +L E      
Sbjct: 368 MISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTG 427

Query: 241 LISW----NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
           L S+    NS+ID Y+K   +  A ++F+ +P +NV SW+ +I G   +    EAL+ F+
Sbjct: 428 LTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQ 487

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
           +M+   ++P+ ++++  +SACA++GAL  GK IH    R+ +  D  +  AL+DMY++CG
Sbjct: 488 QMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCG 546

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
            ++ A   F S  +K+V S+N+++ G    G G  A++ F +M    +  D++ F  +L 
Sbjct: 547 RMEPAWNQFNS-CEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLC 605

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
           ACS SG+ T+G   F+SM+    I P L+HY+ +VDLL RAG LE A   ++ MP+ P+ 
Sbjct: 606 ACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDP 665

Query: 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
           A+WG LL ACR +QNV L E+  + + E+     G Y+LL N+YAD+G W+   R+RK+M
Sbjct: 666 AIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIM 725

Query: 537 RKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSF 579
           R+ ++  + G S +E+ G +  F++G+ F  Q +E+  V++ F
Sbjct: 726 RENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGF 768



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 144/443 (32%), Positives = 229/443 (51%), Gaps = 37/443 (8%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++ +A  +F ++ + + +  N ++ GY ++    +AL+ Y  M   G+  D YT+P VL+
Sbjct: 144 DLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLR 203

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            CG L  L  G E+H  V++ GF  DV VVN LI MY KCG +  AR VF+    +D +S
Sbjct: 204 TCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRIS 263

Query: 181 WNLVLRGFVE---CGEMGK----AREVF---DEMPQKDAIS---------WSIMIDGYRK 221
           WN ++ G+ E   C E  +     RE F   D M     IS             + GY  
Sbjct: 264 WNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVI 323

Query: 222 KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           K G ++   +             NS+I  ++ +G    A+ +F++M  +++ SW+ MI G
Sbjct: 324 KTGFVAEVSVN------------NSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISG 371

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
           Y ++G P++A+  +  M  +GV PD I++   +SACA +G LD G  +H F  R+ +T  
Sbjct: 372 YEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSY 431

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
           +IV  +LIDMY KC  +D+A  +F+ +  KNVIS+  +I GL +N    EAL  F QM  
Sbjct: 432 VIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMIL 491

Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIF-QSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460
              P + +  + VL AC+  G  + G  I   +++   G +  L   + L+D+  R G +
Sbjct: 492 SLKP-NSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLP--NALLDMYVRCGRM 548

Query: 461 EQALNIVESMPMKPNLALWGTLL 483
           E A N   S   + ++A W  LL
Sbjct: 549 EPAWNQFNS--CEKDVASWNILL 569



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 224/449 (49%), Gaps = 18/449 (4%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N++I       + +KAL    +M+   + V+  TY  +L+ C       EG+ +H  V K
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
                 V + N L+ M+ + G +  A  VF     +DL SWN+++ G+ + G   +A  +
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNL 182

Query: 201 FDEM----PQKDAISWSIMI-------DGYRKKKGDISSARILFEHMPIKDLISWNSMID 249
           +  M     + D  ++  ++       D  R ++  +   R  FE     D+   N++I 
Sbjct: 183 YHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFE----SDVDVVNALIT 238

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
            Y K GD+ +A+ +F+ MP R+  SW+ MI GY ++    E L LF  M    V PD+++
Sbjct: 239 MYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMT 298

Query: 310 VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369
           +   ISAC  +G   LG+ +H ++ ++    ++ V  +LI M+   G  DEA  +F  M 
Sbjct: 299 MTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKME 358

Query: 370 KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR 429
            K+++S+  MI+G   NG  E+A++ +  ME EG+  D++    VL AC+  GL  +G  
Sbjct: 359 FKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIM 418

Query: 430 IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR-N 488
           + +   R  G+   +   + L+D+ S+   +++AL +   +P K N+  W +++L  R N
Sbjct: 419 LHEFADR-TGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNK-NVISWTSIILGLRLN 476

Query: 489 HQNVTLAEVVVEGLVELKADDCGLYVLLS 517
           +++        + ++ LK +   L  +LS
Sbjct: 477 YRSFEALFFFQQMILSLKPNSVTLVSVLS 505


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 184/523 (35%), Positives = 290/523 (55%), Gaps = 12/523 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVN-MKRKGLLVDNYTYPFVLK 120
           +D A  +F+   + NT + NTMI GY Q++ P +A+  +V  M+ +   +D+ T+   L 
Sbjct: 271 VDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALT 330

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           A   L  L  G ++H  ++K   +  V ++N +I MYS+CG +G +  VF     +D+V+
Sbjct: 331 AISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVT 390

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMP--I 238
           WN ++  FV+ G   +   +  EM ++  +  S+ +        ++ S  I  +     I
Sbjct: 391 WNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLI 450

Query: 239 KDLISWNSM----IDGYAKIGDLVAAQQLF--NEMPERNVFSWSIMIDGYAQHGNPKEAL 292
           +  I +  M    ID YAK G +  AQQLF  N   +R+  +W+ MI GY Q+G  +E  
Sbjct: 451 RHGIQFEGMDGYLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGF 510

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            +FR+M+ Q VRP+ +++   + AC  +G + LGK IH F  R  +  ++ V TAL+DMY
Sbjct: 511 AVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTALLDMY 570

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            K G++  A  +F    +KN ++Y  MI   G +G GE AL  F  M   GI  D + F+
Sbjct: 571 SKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTFV 630

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            +L ACS++GL  EG RIFQSM+R   I+P  EHY C+ D+L R G + +A   V+ +  
Sbjct: 631 AILSACSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADMLGRVGRVXEAYEFVKGLGE 690

Query: 473 KPN-LALWGTLLLACRNHQNVTLAEVVVEGLVELKADD--CGLYVLLSNIYADAGMWEHA 529
           + N   +WG+LL ACR H    L +VV   L+E++      G +VLLSNIYA  G W++ 
Sbjct: 691 EGNTFRIWGSLLGACRIHGEFELGKVVANKLLEMEKGSXLTGYHVLLSNIYAAEGNWDNV 750

Query: 530 LRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            R+RK MR++ + KE G S +E+ G++  F+S +    Q  E+
Sbjct: 751 DRVRKEMRQKGLMKEAGCSWVEVAGHVNCFMSRDHKHPQCAEI 793



 Score =  162 bits (409), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 220/431 (51%), Gaps = 30/431 (6%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMK-RKGLLVDNYTYPFVLKAC 122
           QA  LF+ I +P T + NT+I G+  ++ P  AL FY  M+       D+YT+   LKAC
Sbjct: 55  QALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKAC 114

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC----GHMGCA---------RSV 169
                L  G  +H  V++  F     V N L+ MYS C     ++G A         R V
Sbjct: 115 AQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRV 174

Query: 170 FEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGD 225
           F+    +++V+WN ++  +V+   + +A ++F  M     +   +S+  +     +   D
Sbjct: 175 FDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWRMN-D 233

Query: 226 ISSARILFEHMP------IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMI 279
             +A +L+  +       + D    +S I  YA++G +  A+++F+   ERN   W+ MI
Sbjct: 234 YDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMI 293

Query: 280 DGYAQHGNPKEALYLFREML-CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338
            GY Q+  P EA+ LF +++  +    D ++ + A++A +Q+  LDLG+ +H ++ +S  
Sbjct: 294 GGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSST 353

Query: 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
            + +++  A+I MY +CGS+  + ++F +M +++V+++N M++    NG  +E L    +
Sbjct: 354 ILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFE 413

Query: 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE-PKLEHYSCLVDLLSRA 457
           M+ +G   D +    +L   S+      G +    + RH GI+   ++ Y  L+D+ +++
Sbjct: 414 MQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRH-GIQFEGMDGY--LIDMYAKS 470

Query: 458 GELEQALNIVE 468
           G +  A  + E
Sbjct: 471 GLITTAQQLFE 481



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 124/506 (24%), Positives = 238/506 (47%), Gaps = 31/506 (6%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N D   R+F+ + + N    NTMI  Y ++    +A   +  M R G+     ++  V  
Sbjct: 167 NCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFP 226

Query: 121 ACGVLMGLVEGTEIHGEVVKMG--FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDL 178
           A   +        ++G VVK+G  ++ D FVV+  I MY++ G +  AR +F+    ++ 
Sbjct: 227 AVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNT 286

Query: 179 VSWNLVLRGFVECGEMGKAREVFDEMPQKD--------------AISWSIMIDGYRKKKG 224
             WN ++ G+V+     +A ++F ++ + +              AIS    +D  R+   
Sbjct: 287 EVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHA 346

Query: 225 DISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQ 284
            I  +  + +      ++  N++I  Y++ G +  + ++F+ M ER+V +W+ M+  + Q
Sbjct: 347 YILKSSTILQ------VVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQ 400

Query: 285 HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIV 344
           +G   E L L  EM  QG   D +++   +S  + + + ++GK  H ++ R  I  + + 
Sbjct: 401 NGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGM- 459

Query: 345 QTALIDMYMKCGSLDEARRIF--YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
              LIDMY K G +  A+++F   S   ++  ++N MIAG   NG  EE    F +M  +
Sbjct: 460 DGYLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQ 519

Query: 403 GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
            +  + +    +L AC+  G    G +I     R C +   +   + L+D+ S++G +  
Sbjct: 520 NVRPNAVTLASILPACNPMGTIGLGKQIHGFAIR-CFLNQNVFVGTALLDMYSKSGAITY 578

Query: 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLV--ELKADDCGLYVLLSNIY 520
           A N+     ++ N   + T++L+   H     A  +   ++   +K D      +LS   
Sbjct: 579 AENVFAE-TLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSAC- 636

Query: 521 ADAGMWEHALRI-RKMMRKRKIKKET 545
           + AG+ +  LRI + M R+ KI+  +
Sbjct: 637 SYAGLVDEGLRIFQSMEREYKIQPSS 662



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 157/353 (44%), Gaps = 34/353 (9%)

Query: 161 GHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG------KAREVFDEMPQKDAISWSI 214
           GH   A  +F+       V WN ++ GF+ C  M        AR      P+ D+ ++S 
Sbjct: 51  GHPHQALHLFDSIPRPTTVLWNTIIIGFI-CNNMPIDALLFYARMRASPSPKFDSYTFSS 109

Query: 215 MIDGYRK----KKGDISSARILFEHMPIKDLISWNSMIDGYAK-------IG-------- 255
            +    +    K G      +L  H     ++ +NS+++ Y+        +G        
Sbjct: 110 TLKACAQARSLKLGKALHCHVLRSHFGSSRIV-YNSLLNMYSTCLTEVPYLGTAYDFNNC 168

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
           DLV  +++F+ M +RNV +W+ MI  Y +     EA  +FR M+  G+RP  +S +    
Sbjct: 169 DLV--RRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFP 226

Query: 316 ACAQVGALDLGKWIHVFMKR--SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNV 373
           A  ++   D    ++  + +  S    D  V ++ I MY + G +D AR IF    ++N 
Sbjct: 227 AVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNT 286

Query: 374 ISYNVMIAGLGMNGFGEEALKCFAQ-METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
             +N MI G   N    EA+  F Q ME+E    DD+ FL  L A S       G ++  
Sbjct: 287 EVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHA 346

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
            + +   I  ++   + ++ + SR G +  +  +  +M ++ ++  W T++ A
Sbjct: 347 YILKSSTI-LQVVILNAIIVMYSRCGSIGTSFKVFSNM-LERDVVTWNTMVSA 397



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 85/209 (40%), Gaps = 43/209 (20%)

Query: 222 KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           ++G    A  LF+ +P    + WN++I G+           + N MP   +  ++ M   
Sbjct: 49  RQGHPHQALHLFDSIPRPTTVLWNTIIIGF-----------ICNNMPIDALLFYARM--- 94

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
                +PK   Y F   L                ACAQ  +L LGK +H  + RS     
Sbjct: 95  -RASPSPKFDSYTFSSTL---------------KACAQARSLKLGKALHCHVLRSHFGSS 138

Query: 342 MIVQTALIDMYMKC-------------GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
            IV  +L++MY  C              + D  RR+F +M K+NV+++N MI+       
Sbjct: 139 RIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTER 198

Query: 389 GEEALKCFAQMETEGIPKDDLIFLGVLIA 417
             EA K F  M   GI    + F+ V  A
Sbjct: 199 LIEAFKMFRTMMRMGIRPTPVSFVNVFPA 227


>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
          Length = 569

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 177/482 (36%), Positives = 272/482 (56%), Gaps = 52/482 (10%)

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           +IH +++  GF    F++  L+  Y   G++  A  VFE  E      WN ++RG  +  
Sbjct: 52  QIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSE 111

Query: 193 EMGKAREVFDEMPQKDA----ISWSIMIDGYRK----KKGD------------------- 225
              K  E+++ M + +A     ++S +I G  +    ++G+                   
Sbjct: 112 TPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVANGYCTNVFVRT 171

Query: 226 --------------ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271
                         +  AR +F+ +  ++++SWNS++ GY + GD+  A+++F+EMPERN
Sbjct: 172 SLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERN 231

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV 331
           V SW+ MI G AQ G  K+AL+LF EM   GV+ D ++++ A+SACA++G L LG WIH 
Sbjct: 232 VVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHS 291

Query: 332 FMKR----SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
           ++          + + +  +LI MY  CG +D+A ++F  M +++ IS+  MI G    G
Sbjct: 292 YIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQG 351

Query: 388 FGEEALKCFAQME----TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443
             EEAL  F  M+     EG P D + F+GVL ACSH+G   +G   F+ M +  GI P+
Sbjct: 352 HAEEALGVFQWMQRLGTDEGRP-DGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPR 410

Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLV 503
           +EHY C+VDLLSRAG L++A  + ESMPMKPN A+WG LL  CR H+N  LA  V + LV
Sbjct: 411 IEHYGCMVDLLSRAGFLDEAHRLXESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLV 470

Query: 504 -ELKADDCGLY-VLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
            ELK D    Y VLLSN+YA A  W+    +R+ M +  ++K  GRS ++I+G + +FV+
Sbjct: 471 LELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQINGVVHDFVA 530

Query: 562 GE 563
           G+
Sbjct: 531 GD 532



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 136/446 (30%), Positives = 212/446 (47%), Gaps = 60/446 (13%)

Query: 24  TTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERLFNQIYQPNTYMHNT 82
           T   + QI  Q+  N    + F L +LL   +TS N LN   A ++F +I  P+T + N 
Sbjct: 46  TIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLN---AHKVFERIENPSTTVWNQ 102

Query: 83  MIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMG 142
           MIRG++QS  P K +  Y  M       + +TY F++  C     L EG ++HG VV  G
Sbjct: 103 MIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVANG 162

Query: 143 FLCDVFVVNGLIGMYSKCGHMGC---ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKARE 199
           +  +VFV   L+ +Y+  G       AR VF+    +++VSWN +L G+V CG++  AR 
Sbjct: 163 YCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARR 222

Query: 200 VFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM--------------------PIK 239
           +FDEMP+++ +SW+ MI G   + G    A  LF  M                     + 
Sbjct: 223 IFDEMPERNVVSWTTMIAGC-AQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELG 281

Query: 240 DLI--SW---------------------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
           DL   +W                     NS+I  YA  G +  A ++F  M +R+  SW+
Sbjct: 282 DLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWT 341

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQGV---RPDVISVMGAISACAQVGALDLGKWIHVF- 332
            MI G+A+ G+ +EAL +F+ M   G    RPD I+ +G + AC+  G +D G+  H F 
Sbjct: 342 SMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGR--HFFE 399

Query: 333 --MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNGFG 389
              K+  I   +     ++D+  + G LDEA R+  SM  K N   +  ++ G  ++   
Sbjct: 400 CMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLXESMPMKPNDAVWGALLGGCRIHKNA 459

Query: 390 EEALKCFAQMETEGIPKDDLIFLGVL 415
           E A     ++  E  P     +L +L
Sbjct: 460 ELASHVAQKLVLELKPDQAAGYLVLL 485


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 173/545 (31%), Positives = 277/545 (50%), Gaps = 100/545 (18%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A  +F++  + N    N MIR Y  ++   +ALS +  M       D+YT+P VLKAC  
Sbjct: 90  ARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSG 149

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L  L  G ++H  +VK+G   ++F+ N L+ MY K                         
Sbjct: 150 LDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGK------------------------- 184

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
                 CG + +AR+V D+M                                P +D++SW
Sbjct: 185 ------CGCLREARKVLDQM--------------------------------PYRDVVSW 206

Query: 245 NSMIDGYAKIGDLVAA-------------------------------------QQLFNEM 267
           NSM+ GYA+ G    A                                       +F  M
Sbjct: 207 NSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERM 266

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK 327
            ++N+ SW++MI  Y  +  P EA+ LF +M   G++PD +++   + AC  + AL LG+
Sbjct: 267 TKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGR 326

Query: 328 WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
            +H ++++  +  +++++ AL+DMY KCG L+EAR +F  M  ++V+S+  M++  G +G
Sbjct: 327 RLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSG 386

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
            G +A+  FA+M   G   D + F+ VL ACSH+GL  +G   F+ M    GI P++EH+
Sbjct: 387 QGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHF 446

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
           +C+VDL  RAGE+E+A + ++ MPM+PN  +WG LL ACR H  + +  V  + L +L  
Sbjct: 447 ACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAP 506

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDV 567
              G YVLLSNIYA AGMW+  + +R  M+K  IKK  G S +E++G +  F++G+ +  
Sbjct: 507 KQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHP 566

Query: 568 QSEEL 572
           Q++ +
Sbjct: 567 QAKNI 571



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 153/343 (44%), Gaps = 55/343 (16%)

Query: 185 LRGFVECGEMGKAR---EVFDEMPQKDAISWSIMIDGYR--KKKGDISSARILFEHMPIK 239
            RGFV    +   R   EVF     K+A    +++D Y   K    + S  ++ EH+ I 
Sbjct: 17  FRGFVSLTRIRFDRLKVEVF----SKEACE--VILDQYPGIKTLNKLHSKIVINEHLRID 70

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
             ++   ++  Y+  G+   A+ +F+   E+NV  +++MI  Y  +    EAL +F+ ML
Sbjct: 71  PTLAI-KLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVML 129

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
                PD  +    + AC+ +  L +G  +H  + +  +  ++ +  AL+ MY KCG L 
Sbjct: 130 SCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLR 189

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK------------------------C 395
           EAR++   M  ++V+S+N M+AG   +G  ++AL+                        C
Sbjct: 190 EARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVC 249

Query: 396 FAQMET--------EGIPKDDLIFLGVLIACS-HSGLATEGYRIFQSMKRHCGIEPKLEH 446
           +  +E         E + K +LI   V+IA   ++ +  E   +F  M+  CG++P    
Sbjct: 250 YTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEE-CGMKPDA-- 306

Query: 447 YSCLVDLLSRAGELEQAL------NIVESMPMKPNLALWGTLL 483
              +  LL   G+L            +E   ++PNL L   LL
Sbjct: 307 -VTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALL 348



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 148/340 (43%), Gaps = 73/340 (21%)

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY------------------------ 219
           ++R +   GE   AR +FD   +K+ + +++MI  Y                        
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 220 -------RKKKGDISSARILFE-HMPI------KDLISWNSMIDGYAKIGDLVAAQQLFN 265
                   K    + + R+  + H  I       +L   N+++  Y K G L  A+++ +
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
           +MP R+V SW+ M+ GYAQ G   +AL + +EM    +  D    M ++S      +L+ 
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDA-GTMASLSPVVCYTSLEN 255

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
            ++IH                                 +F  MTKKN+IS+NVMIA    
Sbjct: 256 VQYIH--------------------------------NMFERMTKKNLISWNVMIAIYVN 283

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           N    EA+  F QME  G+  D +    +L AC        G R+ + +++   ++P L 
Sbjct: 284 NSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKG-NLQPNLL 342

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
             + L+D+ ++ G LE+A ++ + M ++ ++  W +++ A
Sbjct: 343 LENALLDMYAKCGCLEEARDVFDKMRLR-DVVSWTSMMSA 381



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 127/283 (44%), Gaps = 11/283 (3%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           N +V+    S      L+I  ++ + +L  +  T++ L   +   +  N+     +F ++
Sbjct: 207 NSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERM 266

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
            + N    N MI  Y  +S P +A+S ++ M+  G+  D  T   +L ACG L  L  G 
Sbjct: 267 TKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGR 326

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
            +H  + K     ++ + N L+ MY+KCG +  AR VF+   ++D+VSW  ++  +   G
Sbjct: 327 RLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSG 386

Query: 193 EMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARILFEHMP-----IKDLIS 243
           +   A  +F +M       D+I++  ++       G +   R  F  M      +  +  
Sbjct: 387 QGYDAVALFAKMLDSGQNPDSIAFVSVLSAC-SHTGLLDQGRHYFRMMTEQYGIVPRIEH 445

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQH 285
           +  M+D + + G++  A     +MP E N   W  ++     H
Sbjct: 446 FACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVH 488


>gi|255581780|ref|XP_002531691.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528667|gb|EEF30682.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 434

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 160/426 (37%), Positives = 257/426 (60%), Gaps = 4/426 (0%)

Query: 11  LKNPLV--SLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERL 68
           + NP +  SLL+ SKT     Q+ A     +  + P   S LL     P   N++    +
Sbjct: 5   IPNPSLHFSLLKTSKTDKETKQLHALSVKTNTFSHPSISSCLLSLYAEPKINNLEYVLSI 64

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
           FN+I +P   ++N +I+ Y Q+     A++ +  +  +    D +T P V+K C  L   
Sbjct: 65  FNKIQEPALVLYNILIKCYIQNQLSHDAITLFSQLLHE-FNPDGFTLPCVIKGCARLHAT 123

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
            EG +IHG V+K+GF  + FV + L+ MYSKC  +  A+ VF   + KDLVSWN ++ G+
Sbjct: 124 KEGKQIHGLVLKLGFGLNKFVSSSLVNMYSKCKDIDSAKKVFLSMDDKDLVSWNSLIDGY 183

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMI 248
           V+CG++    ++F+EMP++D  SW+++IDG+  K G +  AR LF+ MP ++L+SWN+MI
Sbjct: 184 VKCGQVELGMKLFEEMPERDLFSWTVLIDGF-SKCGKVDVARELFDKMPSRNLVSWNAMI 242

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
           +GY K GD V A +LF++MPE+N+ SW+ M+ GY  +   KEAL LF  ML +   P+  
Sbjct: 243 NGYMKAGDFVLASELFDKMPEKNLISWNSMVAGYDLNERFKEALDLFLTMLERDFTPNHA 302

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           +++   SA + + +L  GKW+H +M ++   +D ++ T+LI+MY KCG+++ A  +F  +
Sbjct: 303 TLVSTFSAVSGLASLSTGKWMHSYMVKNGFQLDGVLATSLINMYSKCGNIESALSVFQLI 362

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
           TKK +  +  +I GLGM+G  + AL+ F +M   G+    + F+GVL ACSH+GL  +G 
Sbjct: 363 TKKKLGHWTAIIVGLGMHGMADNALEFFHEMCRTGMRPHAITFIGVLNACSHAGLVEDGR 422

Query: 429 RIFQSM 434
           + F  M
Sbjct: 423 KYFDMM 428



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 143/331 (43%), Gaps = 49/331 (14%)

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
           KI +L     +FN++ E  +  ++I+I  Y Q+    +A+ LF ++L +   PD  ++  
Sbjct: 54  KINNLEYVLSIFNKIQEPALVLYNILIKCYIQNQLSHDAITLFSQLLHE-FNPDGFTLPC 112

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
            I  CA++ A   GK IH  + +    ++  V ++L++MY KC  +D A+++F SM  K+
Sbjct: 113 VIKGCARLHATKEGKQIHGLVLKLGFGLNKFVSSSLVNMYSKCKDIDSAKKVFLSMDDKD 172

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI-ACSHSGLATEGYRIF 431
           ++S+N +I G    G  E  +K F +M     P+ DL    VLI   S  G       +F
Sbjct: 173 LVSWNSLIDGYVKCGQVELGMKLFEEM-----PERDLFSWTVLIDGFSKCGKVDVARELF 227

Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA------ 485
             M         L  ++ +++   +AG+   A  + + MP K NL  W +++        
Sbjct: 228 DKMPSR-----NLVSWNAMINGYMKAGDFVLASELFDKMPEK-NLISWNSMVAGYDLNER 281

Query: 486 ----------------CRNHQNVTLAEVVVEGLVELKAD--------------DCGLYVL 515
                             NH  +      V GL  L                 D  L   
Sbjct: 282 FKEALDLFLTMLERDFTPNHATLVSTFSAVSGLASLSTGKWMHSYMVKNGFQLDGVLATS 341

Query: 516 LSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           L N+Y+  G  E AL + +++ K+K+   T 
Sbjct: 342 LINMYSKCGNIESALSVFQLITKKKLGHWTA 372


>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 149/349 (42%), Positives = 225/349 (64%)

Query: 224 GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
           G +S AR LF+ +  +D+  WN+M+ GYAK+GD+  A+ LF  MPERNV SW+ +I GYA
Sbjct: 188 GCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYA 247

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
           Q   P EA+ +FR M  + V PD I+++ A+SACA +GAL+LG+WIH ++ +  ++  + 
Sbjct: 248 QMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVP 307

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           +  ALIDMY KCG +++A  +F +M  K+VI++  MI GL ++G G EAL+ F+ ME   
Sbjct: 308 LNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNR 367

Query: 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
           I  +++ F+ +L AC H GL   G   F+ M    GI+PK++HY C++DLL RAG L++A
Sbjct: 368 IKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEA 427

Query: 464 LNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA 523
             +V  MP + N  +WG+LL A R H +  L +  ++ L++++  + G Y LLSNIYA  
Sbjct: 428 QELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIKVEPHNSGNYTLLSNIYATQ 487

Query: 524 GMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
             W  A  +RK+MR   +KK  G S IE++  + EFV+G+    QSE +
Sbjct: 488 SKWNEAGMVRKVMRDTGVKKMPGGSCIEVNNRVHEFVAGDKLHPQSERI 536



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 209/429 (48%), Gaps = 45/429 (10%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           L+SLL+      H+ Q    + +  L  +   LS+ + + +S    +   +  +F    +
Sbjct: 44  LLSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHS--IFTHKTR 101

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           P+ Y++NT+I+  +      +A+  Y  +    L  D Y+ PFVLKA   L+ +  G +I
Sbjct: 102 PDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQI 161

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           H + +  G + D+ VV  LI MYS CG +  AR +F+G   +D+  WN ++ G+ + G++
Sbjct: 162 HCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDV 221

Query: 195 GKAREVFDEMPQKDAISWSIMIDGY----RKKKGDISSARILFE---------------- 234
             AR +F+ MP+++ ISW+ +I GY    R  +      R+  E                
Sbjct: 222 DNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSAC 281

Query: 235 -HMPIKDLISW-----------------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
            H+   +L  W                 N++ID YAK G +  A ++F  M  ++V +W+
Sbjct: 282 AHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWT 341

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM-KR 335
            MIDG A HG  +EAL +F  M    ++P+ I+ +  +SAC  VG +++G+W    M  +
Sbjct: 342 SMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTK 401

Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG---FGEE 391
             I   +     +ID+  + G L EA+ +   M  + N   +  ++A   ++G    G++
Sbjct: 402 YGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQ 461

Query: 392 ALKCFAQME 400
           AL+   ++E
Sbjct: 462 ALQHLIKVE 470



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 126/276 (45%), Gaps = 33/276 (11%)

Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
           +D I  +  I+  + +G    +  +F      +++ ++ +I   +      EA+ L+  +
Sbjct: 71  QDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRI 130

Query: 299 LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC--- 355
           L   +R D  S+   + A  ++ A+ +G+ IH     + +  D+ V TALI MY  C   
Sbjct: 131 LASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCV 190

Query: 356 ----------------------------GSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
                                       G +D AR +F  M ++NVIS+  +IAG     
Sbjct: 191 SEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMD 250

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
              EA+  F +M+ E +  D++  L  L AC+H G    G  I   + +H G+   +   
Sbjct: 251 RPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKH-GLSKIVPLN 309

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
           + L+D+ ++ G++E+AL + ++M  K ++  W +++
Sbjct: 310 NALIDMYAKCGKIEKALEVFKNMEHK-SVITWTSMI 344


>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 153/363 (42%), Positives = 237/363 (65%), Gaps = 1/363 (0%)

Query: 208 DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
           D +  + +ID Y  K G +  AR++F+ M +++L+SWN+MIDGY K GD+  A +LF+++
Sbjct: 125 DVMVGTALIDMY-AKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKL 183

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK 327
           P +NV SW+++I G+ +    +EAL  FREM   GV PD ++V+  ISACA +GAL LG 
Sbjct: 184 PVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIISACANLGALGLGL 243

Query: 328 WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
           W+H  + +     ++ V  +LIDMY +CG ++ AR++F  M+++N++S+N +I G  +NG
Sbjct: 244 WVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNG 303

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
             ++AL  F  M+ EG+  + + +   L ACSH+GL  EG +IF  +KR     P++EHY
Sbjct: 304 LADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADIKRDHRNSPRIEHY 363

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
            CLVDL SRAG L++A ++++ MPM PN  + G+LL ACR   +V LAE V++  VEL  
Sbjct: 364 GCLVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGSLLAACRTQGDVELAEKVMKYQVELYP 423

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDV 567
                YVL SNIYA  G W+ A ++R+ M++R ++K    S IEID  I +FVSG+ +  
Sbjct: 424 GGDSNYVLFSNIYAAVGKWDGASKVRREMKERGLQKNLAFSSIEIDSGIHKFVSGDKYHE 483

Query: 568 QSE 570
           +++
Sbjct: 484 END 486



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 179/359 (49%), Gaps = 43/359 (11%)

Query: 53  SLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDN 112
           + + PN  N +Q   L ++     T    + I  + +++N  KA S ++ M    +  ++
Sbjct: 28  TFSPPNNPNKNQTLSLKHKPNSNQTVSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNH 87

Query: 113 YTYPFVLKACG---VLMGLVEGTEIHGEVVKMGF-LCDVFVVNGLIGMYSKCGHMGCARS 168
            T   +L AC        +  G  +H    K GF + DV V   LI MY+KCG +  AR 
Sbjct: 88  ITLITLLSACAHSPSKTSITFGAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARL 147

Query: 169 VFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK----- 223
           VF+   +++LVSWN ++ G+++ G++  A ++FD++P K+ +SW+++I G+ KK+     
Sbjct: 148 VFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEA 207

Query: 224 ----GDISSARILFEHMPIKDLIS------------W-----------------NSMIDG 250
                ++  A ++ + + +  +IS            W                 NS+ID 
Sbjct: 208 LECFREMQLAGVVPDFVTVIAIISACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDM 267

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           YA+ G +  A+Q+F+ M +RN+ SW+ +I G+A +G   +AL  FR M  +G+ P+ +S 
Sbjct: 268 YARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSY 327

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA-LIDMYMKCGSLDEARRIFYSM 368
             A++AC+  G +D G  I   +KR       I     L+D+Y + G L EA  +   M
Sbjct: 328 TSALTACSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKM 386



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 105/221 (47%), Gaps = 18/221 (8%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D A +LF+++   N      +I G+ +    ++AL  +  M+  G++ D  T   ++ 
Sbjct: 172 DVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIIS 231

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L  G  +H  V+K  F  +V V+N LI MY++CG +  AR VF+G   ++LVS
Sbjct: 232 ACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVS 291

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQK-------------DAISWSIMIDGYRKKKGDIS 227
           WN ++ GF   G   KA   F  M ++              A S + +ID   K   DI 
Sbjct: 292 WNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADIK 351

Query: 228 SARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
                 +H     +  +  ++D Y++ G L  A  +  +MP
Sbjct: 352 R-----DHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMP 387


>gi|354805213|gb|AER41630.1| CRR4 [Oryza nivara]
          Length = 748

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 172/503 (34%), Positives = 263/503 (52%), Gaps = 73/503 (14%)

Query: 106 KGLLVDNYTYPFVLKACGVLMGLVEGTE-IHGEVVKMGFLCDVFVVNGLIGMYSKC---- 160
           +G+  + +T+ F+L+AC  L+GL      +HG++V+ GF  DVFV N L+ +Y +C    
Sbjct: 105 QGVPPNGFTFTFLLRACA-LLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGG 163

Query: 161 ------------------------------GHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
                                         G    A   FE    +++VSWN V+ GF  
Sbjct: 164 GVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFAR 223

Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDG 250
            G+M  AR VFD MP ++A+SW++MI GY    GD+ +AR +F+ M  KD++SW +M+  
Sbjct: 224 MGDMVTARAVFDRMPSRNAVSWNLMISGY-ATSGDVEAARSVFDRMDQKDVVSWTAMVSA 282

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVIS 309
           YAKIGDL  A +LF+ MP +N+ SW+ MI GY  +    EAL  F+ M+ +G  RPD  +
Sbjct: 283 YAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEAT 342

Query: 310 VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369
           ++  +SACAQ+G+++   WI  F+ +S I + + +  ALIDM+ KCG +  A+ IFY M 
Sbjct: 343 LVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSIFYKME 402

Query: 370 KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR 429
            + +I++  MI+G   NG   +AL  +  M  EG+  DD +F+  L AC+H GL  EG+ 
Sbjct: 403 TRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWS 462

Query: 430 IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
           IF  M     I+P++EHY C+VDLL RA                                
Sbjct: 463 IFNEMVERYNIQPRMEHYGCMVDLLGRA-------------------------------- 490

Query: 490 QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSV 549
               L E V + + EL+  +    VL+SN  A  G W+  +  R  MR   I+K  G S 
Sbjct: 491 ---ELIEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGIEKVPGSSS 547

Query: 550 IEIDGNIKEFVSGEIFDVQSEEL 572
           I++   + EF++ +    + +E+
Sbjct: 548 IQVGSEVHEFLAKDTRHKRRKEI 570



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 1/145 (0%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKAL-SFYVNMKRKGLLVDNYTYPFVL 119
           ++D A  LF+ +   N    N MI GY  +S   +AL +F + M       D  T   V+
Sbjct: 288 DLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVV 347

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
            AC  L  +     I   + K      V + N LI M++KCG +G A+S+F   E + ++
Sbjct: 348 SACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRCII 407

Query: 180 SWNLVLRGFVECGEMGKAREVFDEM 204
           +W  ++ GF   G    A  V++ M
Sbjct: 408 TWTTMISGFAFNGLCRDALLVYNNM 432


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1134

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 184/537 (34%), Positives = 295/537 (54%), Gaps = 23/537 (4%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A ++F+ + + N      ++ G+  + +   +LS +  M R+G+  + +T+   LKACG+
Sbjct: 423 AYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMGRQGIYPNEFTFSTNLKACGL 482

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L  L +G +IHG  +K+GF   V V N L+ MYSKCG +  A  VF     + L+SWN +
Sbjct: 483 LNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMVGRSLISWNAM 542

Query: 185 LRGFVECGEMGKAREVF--------DEMPQK-------DAISWSIMIDGYRKKKGDISSA 229
           + G+V  G   +A   F         E P +        A S + MI   ++  G +  +
Sbjct: 543 IAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRS 602

Query: 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
                H P    I+  S++D Y K G+L +A++ F+++ E+ + SWS +I GYAQ G+  
Sbjct: 603 GF---HCPSSATIT-GSLVDLYVKCGNLFSARKAFDQIKEKTMISWSSLILGYAQEGDFV 658

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           EA+ LF+ +     + D   +   I   A    L  GK +   + +    ++  V  +L+
Sbjct: 659 EAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLETSVSNSLV 718

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           DMY+KCG +DEA + F  M  K+VIS+ VMI G G +G G++A+  F +M    I  D++
Sbjct: 719 DMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEV 778

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            +L VL ACSHSG+  EG  +F  +    GI+P++EHY+C+VDLL RAG L++A ++V++
Sbjct: 779 CYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDT 838

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           MP+KPN+ +W TLL  CR H ++ L + V + L+ +   +   YV++SN+Y  AG W   
Sbjct: 839 MPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDGKNPANYVMMSNLYGQAGYWNEQ 898

Query: 530 LRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586
              R++   + ++KE G S +EI+  +  F SGE     S  L LVIQ  +K    R
Sbjct: 899 GNARELGSIKGLQKEAGMSWVEIEREVHFFRSGE----DSHPLTLVIQETLKEVERR 951



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 164/324 (50%), Gaps = 9/324 (2%)

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           +LI+ N +ID Y K  + + A ++F+ MPERNV SW+ ++ G+  +G+   +L LF EM 
Sbjct: 403 NLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMG 462

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
            QG+ P+  +    + AC  + AL+ G  IH F  +    M + V  +L+DMY KCG ++
Sbjct: 463 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRIN 522

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK--DDLIFLGVLIA 417
           EA ++F  M  +++IS+N MIAG    G+G  AL  F  M+   I +  D+     +L A
Sbjct: 523 EAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKA 582

Query: 418 CSHSGLATEGYRIFQSMKR---HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           CS +G+   G +I   + R   HC     +     LVDL  + G L  A    + +  K 
Sbjct: 583 CSSTGMIYAGKQIHGFLVRSGFHCPSSATIT--GSLVDLYVKCGNLFSARKAFDQIKEKT 640

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD-DCGLYVLLSNIYADAGMWEHALRIR 533
            ++ W +L+L      +   A  + + L EL +  D  +   +  ++AD  + +   +++
Sbjct: 641 MIS-WSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQ 699

Query: 534 KMMRKRKIKKETGRSVIEIDGNIK 557
            ++ K     ET  S   +D  +K
Sbjct: 700 ALVVKLPSGLETSVSNSLVDMYLK 723



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 175/340 (51%), Gaps = 15/340 (4%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGL--LVDNYTYPFVL 119
           +++AE++F  +   +    N MI GY  +    +AL+ +  M+   +    D +T   +L
Sbjct: 521 INEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLL 580

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLC--DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           KAC     +  G +IHG +V+ GF C     +   L+ +Y KCG++  AR  F+  + K 
Sbjct: 581 KACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKT 640

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRK----KKGDISSA 229
           ++SW+ ++ G+ + G+  +A  +F  +     Q D+   S +I  +      ++G    A
Sbjct: 641 MISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQA 700

Query: 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
            ++     ++  +S NS++D Y K G +  A++ F EM  ++V SW++MI GY +HG  K
Sbjct: 701 LVVKLPSGLETSVS-NSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGK 759

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA-L 348
           +A+ +F +ML   + PD +  +  +SAC+  G +  G+ +   +  ++     +   A +
Sbjct: 760 KAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACV 819

Query: 349 IDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG 387
           +D+  + G L EA+ +  +M  K NV  +  +++   ++G
Sbjct: 820 VDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHG 859



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 169/361 (46%), Gaps = 25/361 (6%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           ++   N LI MY KC     A  VF+    +++VSW  ++ G V  G++  +  +F EM 
Sbjct: 403 NLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMG 462

Query: 206 QKDAISWSIMIDGYRKKKGDISS-----------ARILFEHMPIKDLISWNSMIDGYAKI 254
           ++             K  G +++            +I FE M    +   NS++D Y+K 
Sbjct: 463 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMM----VEVGNSLVDMYSKC 518

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV--RPDVISVMG 312
           G +  A+++F  M  R++ SW+ MI GY   G    AL  F  M    +  RPD  ++  
Sbjct: 519 GRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTS 578

Query: 313 AISACAQVGALDLGKWIHVFMKRS--RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
            + AC+  G +  GK IH F+ RS         +  +L+D+Y+KCG+L  AR+ F  + +
Sbjct: 579 LLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKE 638

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           K +IS++ +I G    G   EA+  F +++      D  +   ++   +   L  +G ++
Sbjct: 639 KTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQM 698

Query: 431 FQSM--KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
            Q++  K   G+E  +   + LVD+  + G +++A      M +K  ++ W  ++     
Sbjct: 699 -QALVVKLPSGLETSVS--NSLVDMYLKCGLVDEAEKCFAEMQLKDVIS-WTVMITGYGK 754

Query: 489 H 489
           H
Sbjct: 755 H 755



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 114/242 (47%), Gaps = 21/242 (8%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N+  A + F+QI +      +++I GY Q  +  +A+  +  ++     +D++    ++ 
Sbjct: 625 NLFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIG 684

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
                  L +G ++   VVK+    +  V N L+ MY KCG +  A   F   ++KD++S
Sbjct: 685 VFADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVIS 744

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKD-------------AISWSIMIDGYRKKKGDIS 227
           W +++ G+ + G   KA  +F++M + +             A S S MI     K+G+  
Sbjct: 745 WTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMI-----KEGEEL 799

Query: 228 SARILFEHMPIKDLIS-WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQH 285
            +++L E   IK  +  +  ++D   + G L  A+ L + MP + NV  W  ++     H
Sbjct: 800 FSKLL-ETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVH 858

Query: 286 GN 287
           G+
Sbjct: 859 GD 860



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 2/144 (1%)

Query: 340 MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
           +++I    LIDMY KC     A ++F SM ++NV+S+  +++G  +NG    +L  F +M
Sbjct: 402 LNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEM 461

Query: 400 ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
             +GI  ++  F   L AC       +G +I        G E  +E  + LVD+ S+ G 
Sbjct: 462 GRQGIYPNEFTFSTNLKACGLLNALEKGLQI-HGFCLKIGFEMMVEVGNSLVDMYSKCGR 520

Query: 460 LEQALNIVESMPMKPNLALWGTLL 483
           + +A  +   M +  +L  W  ++
Sbjct: 521 INEAEKVFRWM-VGRSLISWNAMI 543


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 173/545 (31%), Positives = 277/545 (50%), Gaps = 100/545 (18%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A  +F++  + N    N MIR Y  ++   +ALS +  M       D+YT+P VLKAC  
Sbjct: 90  ARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSG 149

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L  L  G ++H  +VK+G   ++F+ N L+ MY K                         
Sbjct: 150 LDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGK------------------------- 184

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
                 CG + +AR+V D+M                                P +D++SW
Sbjct: 185 ------CGCLREARKVLDQM--------------------------------PYRDVVSW 206

Query: 245 NSMIDGYAKIGDLVAA-------------------------------------QQLFNEM 267
           NSM+ GYA+ G    A                                       +F  M
Sbjct: 207 NSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERM 266

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK 327
            ++N+ SW++MI  Y  +  P EA+ LF +M   G++PD +++   + AC  + AL LG+
Sbjct: 267 TKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGR 326

Query: 328 WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
            +H ++++  +  +++++ AL+DMY KCG L+EAR +F  M  ++V+S+  M++  G +G
Sbjct: 327 RLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSG 386

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
            G +A+  FA+M   G   D + F+ VL ACSH+GL  +G   F+ M    GI P++EH+
Sbjct: 387 QGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHF 446

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
           +C+VDL  RAGE+E+A + ++ MPM+PN  +WG LL ACR H  + +  V  + L +L  
Sbjct: 447 ACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAP 506

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDV 567
              G YVLLSNIYA AGMW+  + +R  M+K  IKK  G S +E++G +  F++G+ +  
Sbjct: 507 KQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHP 566

Query: 568 QSEEL 572
           Q++ +
Sbjct: 567 QAKNI 571



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 141/311 (45%), Gaps = 46/311 (14%)

Query: 214 IMIDGYR--KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271
           +++D Y   K    + S  ++ EH+ I   ++   ++  Y+  G+   A+ +F+   E+N
Sbjct: 43  VILDQYPGIKTLNKLHSKIVINEHLRIDPTLAI-KLMRAYSAQGETSVARYIFDRSLEKN 101

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV 331
           V  +++MI  Y  +    EAL +F+ ML     PD  +    + AC+ +  L +G  +H 
Sbjct: 102 VVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHD 161

Query: 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391
            + +  +  ++ +  AL+ MY KCG L EAR++   M  ++V+S+N M+AG   +G  ++
Sbjct: 162 AIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDD 221

Query: 392 ALK------------------------CFAQMET--------EGIPKDDLIFLGVLIACS 419
           AL+                        C+  +E         E + K +LI   V+IA  
Sbjct: 222 ALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIY 281

Query: 420 -HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL------NIVESMPM 472
            ++ +  E   +F  M+  CG++P       +  LL   G+L            +E   +
Sbjct: 282 VNNSMPNEAVSLFLQMEE-CGMKPDA---VTIASLLPACGDLSALFLGRRLHKYIEKGNL 337

Query: 473 KPNLALWGTLL 483
           +PNL L   LL
Sbjct: 338 RPNLLLENALL 348



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 147/340 (43%), Gaps = 73/340 (21%)

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY------------------------ 219
           ++R +   GE   AR +FD   +K+ + +++MI  Y                        
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 220 -------RKKKGDISSARILFE-HMPI------KDLISWNSMIDGYAKIGDLVAAQQLFN 265
                   K    + + R+  + H  I       +L   N+++  Y K G L  A+++ +
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
           +MP R+V SW+ M+ GYAQ G   +AL + +EM    +  D    M ++S      +L+ 
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDA-GTMASLSPVVCYTSLEN 255

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
            ++IH                                 +F  MTKKN+IS+NVMIA    
Sbjct: 256 VQYIH--------------------------------NMFERMTKKNLISWNVMIAIYVN 283

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           N    EA+  F QME  G+  D +    +L AC        G R+ + +++   + P L 
Sbjct: 284 NSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKG-NLRPNLL 342

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
             + L+D+ ++ G LE+A ++ + M ++ ++  W +++ A
Sbjct: 343 LENALLDMYAKCGCLEEARDVFDKMRLR-DVVSWTSMMSA 381



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/283 (23%), Positives = 127/283 (44%), Gaps = 11/283 (3%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           N +V+    S      L+I  ++ + +L  +  T++ L   +   +  N+     +F ++
Sbjct: 207 NSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERM 266

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
            + N    N MI  Y  +S P +A+S ++ M+  G+  D  T   +L ACG L  L  G 
Sbjct: 267 TKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGR 326

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
            +H  + K     ++ + N L+ MY+KCG +  AR VF+   ++D+VSW  ++  +   G
Sbjct: 327 RLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSG 386

Query: 193 EMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARILFEHMP-----IKDLIS 243
           +   A  +F +M       D+I++  ++       G +   R  F  M      +  +  
Sbjct: 387 QGYDAVALFAKMLDSGQNPDSIAFVSVLSAC-SHTGLLDQGRHYFRMMTEQYGIVPRIEH 445

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQH 285
           +  M+D + + G++  A     +MP E N   W  ++     H
Sbjct: 446 FACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVH 488


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  315 bits (806), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 175/504 (34%), Positives = 265/504 (52%), Gaps = 41/504 (8%)

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKG--LLVDNYTYPFVLKACGVLMGLVEGTE 133
            T   N ++RG T +S  + AL  + +M+ +G     D+YTYP  LK+C    GLV G +
Sbjct: 84  TTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDGLVLGRQ 143

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           IH    ++G   +VFV +  I MY++CG                                
Sbjct: 144 IHSSTARLGLDGNVFVAHSAISMYARCG-------------------------------R 172

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM-----PIKDLISWNSMI 248
              A ++F+EM  +D +SW+ MI G+    G    A  +F  +     P  D  +  S++
Sbjct: 173 PDDAYQMFEEMQYRDVVSWNAMISGF-AHAGLFGRAMDVFRELVALQCPKPDAGTMASIL 231

Query: 249 D--GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
              G A++ D+   + +F+EM  + + SW+ M+  Y  +    EA+ LF  M   G+ PD
Sbjct: 232 PSMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPD 291

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
            +++   + +C +V AL LGK IH  +KR R+   M+++ AL+DMY  CG L EAR +F 
Sbjct: 292 AVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFD 351

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
           SM  ++V+S+  +I+  G +G G EA+  F +M  +G+  D + F+ +L ACSH+GL   
Sbjct: 352 SMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDM 411

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G   F SM     I PKLEHY+C+VDLL RAG + +A + +  MP+KPN  +WG LL AC
Sbjct: 412 GKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGAC 471

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           R H N+ +  +  + L+ L     G YVLLSNIYA AG W     +R +M  + IKK  G
Sbjct: 472 RIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPG 531

Query: 547 RSVIEIDGNIKEFVSGEIFDVQSE 570
            S  E+   +  F  G+    QS+
Sbjct: 532 VSNAELGDRVHTFHIGDTSHPQSK 555



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 2/148 (1%)

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG--VRPDVISVMGAISACAQV 320
           + +  P+R    +++++ G       ++AL LF  M  QG    PD  +   A+ +CA  
Sbjct: 76  VLDASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAAT 135

Query: 321 GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMI 380
             L LG+ IH    R  +  ++ V  + I MY +CG  D+A ++F  M  ++V+S+N MI
Sbjct: 136 DGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMI 195

Query: 381 AGLGMNGFGEEALKCFAQMETEGIPKDD 408
           +G    G    A+  F ++     PK D
Sbjct: 196 SGFAHAGLFGRAMDVFRELVALQCPKPD 223



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 5/158 (3%)

Query: 46  TLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKR 105
           T++ +L S+      ++   + +F+++        N M+  YT +    +A+  ++ M++
Sbjct: 226 TMASILPSMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQK 285

Query: 106 KGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVV-NGLIGMYSKCGHMG 164
            G+  D  T   VL +CG +  L  G  IH EV+K   +C   ++ N L+ MY+ CG + 
Sbjct: 286 DGIEPDAVTLATVLPSCGEVSALSLGKRIH-EVIKRRRMCSSMLLENALMDMYANCGCLK 344

Query: 165 CARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFD 202
            AR VF+    +D+VSW  ++  +   G  G  RE  D
Sbjct: 345 EARDVFDSMGTRDVVSWTSIISAY---GRHGHGREAID 379


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 155/349 (44%), Positives = 226/349 (64%), Gaps = 7/349 (2%)

Query: 231 ILFEHM-PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
           +LF+ M P   ++S  +M+  YAK+G L  A+ LF+ +P +++  W+ M+DGY QHG P 
Sbjct: 182 VLFDGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPS 241

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS---RITMDMIVQT 346
           EAL LFR ML  GV PD +SV+ A+SA AQ+G  + G+W+H F+  S   R+ ++  V T
Sbjct: 242 EALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGT 301

Query: 347 ALIDMYMKCGSLDEARRIFYSMTK--KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGI 404
           ALIDMY KCGSL++A  +F  +    ++++++N M+ G  M+G   EAL  F Q+  +G+
Sbjct: 302 ALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQGL 361

Query: 405 PKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL 464
              D+ F+GVL ACSHSGL  EG  +F+SM    GIEPK+EHY C+VDLL RAG +E+A 
Sbjct: 362 WPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAF 421

Query: 465 NIVESMP-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA 523
            +V+SM   KP+  +W +LL ACR H+N+ L + + + LV     + G YVLLSN+YA A
Sbjct: 422 ELVQSMTRTKPDAVMWASLLAACRLHKNMELGQRIADHLVANGLANSGTYVLLSNMYAAA 481

Query: 524 GMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           G W    R+R MMR   I+KE G S +E+   + EFV+G+    ++ E+
Sbjct: 482 GNWREVGRVRAMMRASGIQKEPGCSAVEVGRRVVEFVAGDRSHPRAAEI 530



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 161/357 (45%), Gaps = 51/357 (14%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMK-RKGLLVDNYTYPFVL 119
            +D A  L  +   P    + + I  ++       AL+    M    GLL   +T    L
Sbjct: 77  RLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASL 136

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI-KDL 178
            ACG   GL  G  +HG  VK+    + +V   L+GMY++ G    AR +F+G +    +
Sbjct: 137 PACG---GLAVGRALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHV 193

Query: 179 VSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI 238
           VS   +L  + + G +  AR +FD +P KD I W+ M+DGY  + G  S A  LF  M  
Sbjct: 194 VSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGY-TQHGRPSEALRLFRRMLR 252

Query: 239 K----DLIS------------------W--------------------NSMIDGYAKIGD 256
                D +S                  W                     ++ID Y K G 
Sbjct: 253 SGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGS 312

Query: 257 LVAAQQLFNEM--PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
           L  A  +F ++   +R++ +W+ M++GYA HG+ +EAL  F ++  QG+ P  I+ +G +
Sbjct: 313 LEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVL 372

Query: 315 SACAQVGALDLGKWIHVFMKRSR-ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
           +AC+  G +D G+ +   M     I   +     ++D+  + G ++EA  +  SMT+
Sbjct: 373 NACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELVQSMTR 429


>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 149/349 (42%), Positives = 225/349 (64%)

Query: 224 GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
           G +S AR LF+ +  +D+  WN+M+ GYAK+GD+  A+ LF  MPERNV SW+ +I GYA
Sbjct: 188 GCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYA 247

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
           Q   P EA+ +FR M  + V PD I+++ A+SACA +GAL+LG+WIH ++ +  ++  + 
Sbjct: 248 QMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVP 307

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           +  ALIDMY KCG +++A  +F +M  K+VI++  MI GL ++G G EAL+ F+ ME   
Sbjct: 308 LNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNR 367

Query: 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
           I  +++ F+ +L AC H GL   G   F+ M    GI+PK++HY C++DLL RAG L++A
Sbjct: 368 IKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEA 427

Query: 464 LNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA 523
             +V  MP + N  +WG+LL A R H +  L +  ++ L++++  + G Y LLSNIYA  
Sbjct: 428 QELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIKVEPHNSGNYTLLSNIYATQ 487

Query: 524 GMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
             W  A  +RK+MR   +KK  G S IE++  + EFV+G+    QSE +
Sbjct: 488 SKWNEAGMVRKVMRDTGVKKMPGGSCIEVNNRVHEFVAGDKLHPQSERI 536



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 209/429 (48%), Gaps = 45/429 (10%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           L+SLL+      H+ Q    + +  L  +   LS+ + + +S    +   +  +F    +
Sbjct: 44  LLSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHS--IFTHKTR 101

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           P+ Y++NT+I+  +      +A+  Y  +    L  D Y+ PFVLKA   L+ +  G +I
Sbjct: 102 PDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQI 161

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           H + +  G + D+ VV  LI MYS CG +  AR +F+G   +D+  WN ++ G+ + G++
Sbjct: 162 HCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDV 221

Query: 195 GKAREVFDEMPQKDAISWSIMIDGY----RKKKGDISSARILFE---------------- 234
             AR +F+ MP+++ ISW+ +I GY    R  +      R+  E                
Sbjct: 222 DNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSAC 281

Query: 235 -HMPIKDLISW-----------------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
            H+   +L  W                 N++ID YAK G +  A ++F  M  ++V +W+
Sbjct: 282 AHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWT 341

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM-KR 335
            MIDG A HG  +EAL +F  M    ++P+ I+ +  +SAC  VG +++G+W    M  +
Sbjct: 342 SMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTK 401

Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG---FGEE 391
             I   +     +ID+  + G L EA+ +   M  + N   +  ++A   ++G    G++
Sbjct: 402 YGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQ 461

Query: 392 ALKCFAQME 400
           AL+   ++E
Sbjct: 462 ALQHLIKVE 470



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 126/276 (45%), Gaps = 33/276 (11%)

Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
           +D I  +  I+  + +G    +  +F      +++ ++ +I   +      EA+ L+  +
Sbjct: 71  QDNILLSRFIEACSSLGFSHYSHSIFTHKTRPDIYLYNTIIKALSNPELATEAILLYNRI 130

Query: 299 LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC--- 355
           L   +R D  S+   + A  ++ A+ +G+ IH     + +  D+ V TALI MY  C   
Sbjct: 131 LASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCV 190

Query: 356 ----------------------------GSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
                                       G +D AR +F  M ++NVIS+  +IAG     
Sbjct: 191 SEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMD 250

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
              EA+  F +M+ E +  D++  L  L AC+H G    G  I   + +H G+   +   
Sbjct: 251 RPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKH-GLSKIVPLN 309

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
           + L+D+ ++ G++E+AL + ++M  K ++  W +++
Sbjct: 310 NALIDMYAKCGKIEKALEVFKNMEHK-SVITWTSMI 344


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 175/517 (33%), Positives = 292/517 (56%), Gaps = 11/517 (2%)

Query: 67  RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMK-RKGLLVDNYTYPFVLKACGVL 125
           R+     + N    N+MI GY++  + + A      M+    + V+  T   VL  C   
Sbjct: 354 RVLFDTNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEE 413

Query: 126 MGLVEGTEIHGEVVKMGFL-CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           +  ++  EIHG  ++ GF+  D  V N  +  Y+KCG +  A  VF G E K + SWN +
Sbjct: 414 IQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNAL 473

Query: 185 LRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKK----GDISSARILFEHM 236
           + G V+ G   KA +++  M     + D  + + ++    + K    G      +L    
Sbjct: 474 IGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGF 533

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
            + + I   S++  Y + G ++ A+  F+ M E+N+  W+ MI+G++Q+  P +AL +F 
Sbjct: 534 ELDEFICI-SLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFH 592

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
           +ML   + PD IS++GA+ AC+QV AL LGK +H F  +S +T    V  +LIDMY KCG
Sbjct: 593 QMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCG 652

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
            +++++ IF  +  K  +++NV+I G G++G G +A++ F  M+  G   D + F+ +L 
Sbjct: 653 CMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLT 712

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
           AC+H+GL  EG      M+   GI+PKLEHY+C+VD+L RAG L +AL +V  +P KP+ 
Sbjct: 713 ACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDS 772

Query: 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
            +W +LL +CRN++++ + E V   L+EL  D    YVL+SN YA  G W+   ++R+ M
Sbjct: 773 RIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRM 832

Query: 537 RKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELE 573
           ++  ++K+ G S IEI G +  F+ G+   +QS +++
Sbjct: 833 KEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQ 869



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 128/431 (29%), Positives = 215/431 (49%), Gaps = 21/431 (4%)

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM-KRKGLLVDNYTYPFVLKACGVLM 126
           +FN   + N ++ N ++ GY ++S  + A+  +V M      + DN+T P V+KAC  + 
Sbjct: 151 VFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVY 210

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
            +  G  +HG  +K   L DVFV N LI MY K G +  A  VF+    ++LVSWN V+ 
Sbjct: 211 DVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMY 270

Query: 187 GFVECGEMGKAREVFDEMPQKDA-----ISWSIMIDGYRKKKGDISSARILFEHMPIK-- 239
             +E G   ++  +F  +   D      ++  + +     ++G++    ++F  + +K  
Sbjct: 271 ACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLG-MVFHGLALKLG 329

Query: 240 ---DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
              +L   +S++D Y+K G L  A+ LF +  E+NV SW+ MI GY++  + + A  L R
Sbjct: 330 LCGELKVNSSLLDMYSKCGYLCEARVLF-DTNEKNVISWNSMIGGYSKDRDFRGAFELLR 388

Query: 297 EMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHVF-MKRSRITMDMIVQTALIDMYMK 354
           +M  +  V+ + ++++  +  C +       K IH + ++   I  D +V  A +  Y K
Sbjct: 389 KMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAK 448

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CGSL  A  +F  M  K V S+N +I G   NGF  +AL  +  M   G+  D      +
Sbjct: 449 CGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASL 508

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC--LVDLLSRAGELEQALNIVESMPM 472
           L AC+     + G  I  SM R+ G E  L+ + C  LV L  + G++  A    ++M  
Sbjct: 509 LSACARLKSLSCGKEIHGSMLRN-GFE--LDEFICISLVSLYVQCGKILLAKLFFDNMEE 565

Query: 473 KPNLALWGTLL 483
           K NL  W T++
Sbjct: 566 K-NLVCWNTMI 575



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 156/315 (49%), Gaps = 15/315 (4%)

Query: 117 FVLKACGVLMGLVEGTEIHGEV-VKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI 175
            +L+ CG    +  G +IH  +     F  DV ++  L+ MYS C     +  VF  S  
Sbjct: 98  LLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRR 157

Query: 176 KDLVSWNLVLRGFVECGEMGKAREVFDEMPQ-----KDAISWSIMIDG----YRKKKGDI 226
           K+L  WN +L G++       A  VF EM        D  +   +I      Y  + G+ 
Sbjct: 158 KNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEA 217

Query: 227 SSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
                L   + + D+   N++I  Y K G + +A ++F++MP+RN+ SW+ ++    ++G
Sbjct: 218 VHGFALKTKV-LSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENG 276

Query: 287 NPKEALYLFREMLC--QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIV 344
             +E+  LF+ +L   +G+ PDV +++  I  CA+ G + LG   H    +  +  ++ V
Sbjct: 277 VFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKV 336

Query: 345 QTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGI 404
            ++L+DMY KCG L EA R+ +   +KNVIS+N MI G   +     A +   +M+ E  
Sbjct: 337 NSSLLDMYSKCGYLCEA-RVLFDTNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDK 395

Query: 405 PK-DDLIFLGVLIAC 418
            K +++  L VL  C
Sbjct: 396 VKVNEVTLLNVLPVC 410



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 85/178 (47%), Gaps = 16/178 (8%)

Query: 317 CAQVGALDLGKWIHVFMKRS-RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS 375
           C +   +++G+ IH F+  S     D+++ T L+ MY  C S  ++  +F +  +KN+  
Sbjct: 103 CGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFL 162

Query: 376 YNVMIAGLGMNGFGEEALKCFAQM--ETEGIPKDDLIFLGVLIAC-----SHSGLATEGY 428
           +N +++G   N    +A+  F +M   TE +P D+     V+ AC        G A  G+
Sbjct: 163 WNALLSGYLRNSLFRDAVFVFVEMISLTEFVP-DNFTLPCVIKACVGVYDVRLGEAVHGF 221

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
            +   +     +       + L+ +  + G +E A+ + + MP + NL  W +++ AC
Sbjct: 222 ALKTKVLSDVFVG------NALIAMYGKFGFVESAVKVFDKMPQR-NLVSWNSVMYAC 272


>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 597

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 170/496 (34%), Positives = 283/496 (57%), Gaps = 8/496 (1%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            A ++F+++ + N       I GY ++ + Q AL  +  M R G+  + +TY  VL+AC 
Sbjct: 90  NARKVFDRMPERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACT 149

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            L  L  G +IHG + K  F+ ++FV + L+ ++SKCG+M  AR +FE    +D+VSWN 
Sbjct: 150 GLRCLERGMQIHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNA 209

Query: 184 VLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARI--LFEHMP 237
           V+ G+        +  +F  M       D  +   ++    +    I   +I  +   + 
Sbjct: 210 VIGGYAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLIKVCQIHGIIIQLG 269

Query: 238 IKDLISWN-SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN-PKEALYLF 295
               I  N S+ID YAK   + +A  L+  M +++V S++ ++ GYA+  +  +EAL LF
Sbjct: 270 FGSHIDLNGSLIDAYAKSEGMKSASALYKSMLKKDVISFTAIMTGYARKCSYSREALDLF 329

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
           ++M    +  D ++    ++ CA + +L +G+ IH    + + + D+    AL+DMY K 
Sbjct: 330 KDMQHIFMEIDDVTFCTMLNVCADIASLSIGRQIHALAIKYKPSYDVATGNALVDMYAKS 389

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
           G +++A R FY M +KNVIS+  +I G G +G+G EA+  + +ME EG+  +D+ FL +L
Sbjct: 390 GEIEDATRAFYEMKEKNVISWTSLITGYGKHGYGHEAIALYKKMEYEGLKPNDITFLSLL 449

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
            ACSHSGL  EG+  F +M     I P+ EHYSC++DL +R G+LE+A N++  M +KPN
Sbjct: 450 FACSHSGLTGEGWECFNNMITKYNILPRAEHYSCMIDLFARGGQLEEAYNMICKMNIKPN 509

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535
            +LWG +L AC  + +++L EV    L+ +  ++   YV+L+ IYA +G W+ A R+R +
Sbjct: 510 SSLWGAILGACSIYGHMSLGEVAATHLLRMDPENSANYVVLAGIYAASGSWDKACRMRNL 569

Query: 536 MRKRKIKKETGRSVIE 551
           M  R +KK  G S+I+
Sbjct: 570 MEYRSLKKIPGYSIIQ 585



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 107/171 (62%)

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           Y K G+ + A+++F+ MPERNV SW+  I GYA++G+ ++AL +F +M   GVR +  + 
Sbjct: 82  YVKFGETINARKVFDRMPERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTY 141

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
              + AC  +  L+ G  IH  ++++R   ++ VQ+AL+D++ KCG++++AR +F +M++
Sbjct: 142 GSVLRACTGLRCLERGMQIHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSE 201

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
           ++V+S+N +I G     F +++ + F  M  EG+  D      VL A S +
Sbjct: 202 RDVVSWNAVIGGYAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRA 252



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 190/391 (48%), Gaps = 23/391 (5%)

Query: 29  LQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYT 88
           +QI   +  N  I   F  S L+  L S    NM+ A  LF  + + +    N +I GY 
Sbjct: 158 MQIHGCIQKNRFIGNLFVQSALV-DLHSK-CGNMEDARYLFETMSERDVVSWNAVIGGYA 215

Query: 89  QSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF 148
                  +   + +M  +G+  D +T   VLKA      L++  +IHG ++++GF   + 
Sbjct: 216 AQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLIKVCQIHGIIIQLGFGSHID 275

Query: 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV-ECGEMGKAREVFDEMP-- 205
           +   LI  Y+K   M  A ++++    KD++S+  ++ G+  +C    +A ++F +M   
Sbjct: 276 LNGSLIDAYAKSEGMKSASALYKSMLKKDVISFTAIMTGYARKCSYSREALDLFKDMQHI 335

Query: 206 --QKDAISWSIMIDGYRKKKGDISSARI-------LFEHMPIKDLISWNSMIDGYAKIGD 256
             + D +++  M++       DI+S  I         ++ P  D+ + N+++D YAK G+
Sbjct: 336 FMEIDDVTFCTMLN----VCADIASLSIGRQIHALAIKYKPSYDVATGNALVDMYAKSGE 391

Query: 257 LVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISA 316
           +  A + F EM E+NV SW+ +I GY +HG   EA+ L+++M  +G++P+ I+ +  + A
Sbjct: 392 IEDATRAFYEMKEKNVISWTSLITGYGKHGYGHEAIALYKKMEYEGLKPNDITFLSLLFA 451

Query: 317 CAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVI 374
           C+  G    G +  +  + +  I       + +ID++ + G L+EA  +   M  K N  
Sbjct: 452 CSHSGLTGEGWECFNNMITKYNILPRAEHYSCMIDLFARGGQLEEAYNMICKMNIKPNSS 511

Query: 375 SYNVMIAGLGMNG---FGEEALKCFAQMETE 402
            +  ++    + G    GE A     +M+ E
Sbjct: 512 LWGAILGACSIYGHMSLGEVAATHLLRMDPE 542



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 181/385 (47%), Gaps = 14/385 (3%)

Query: 115 YPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174
           Y  +L+ C     L +G  IH  +++ GF  ++ +   LI  Y K G    AR VF+   
Sbjct: 40  YMKILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARKVFDRMP 99

Query: 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMI---DGYRKKKGDIS 227
            +++VSW   + G+ + G    A  VF +M     + +  ++  ++    G R  +  + 
Sbjct: 100 ERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTGLRCLERGMQ 159

Query: 228 SARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN 287
               + ++  I +L   ++++D ++K G++  A+ LF  M ER+V SW+ +I GYA    
Sbjct: 160 IHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVIGGYAAQDF 219

Query: 288 PKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA 347
             ++  +F  M+ +GV PD  ++   + A ++   L     IH  + +      + +  +
Sbjct: 220 NDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLIKVCQIHGIIIQLGFGSHIDLNGS 279

Query: 348 LIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN-GFGEEALKCFAQMETEGIPK 406
           LID Y K   +  A  ++ SM KK+VIS+  ++ G      +  EAL  F  M+   +  
Sbjct: 280 LIDAYAKSEGMKSASALYKSMLKKDVISFTAIMTGYARKCSYSREALDLFKDMQHIFMEI 339

Query: 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS--CLVDLLSRAGELEQAL 464
           DD+ F  +L  C+     + G +I     ++   +P  +  +   LVD+ +++GE+E A 
Sbjct: 340 DDVTFCTMLNVCADIASLSIGRQIHALAIKY---KPSYDVATGNALVDMYAKSGEIEDAT 396

Query: 465 NIVESMPMKPNLALWGTLLLACRNH 489
                M  K N+  W +L+     H
Sbjct: 397 RAFYEMKEK-NVISWTSLITGYGKH 420


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 191/601 (31%), Positives = 318/601 (52%), Gaps = 54/601 (8%)

Query: 23  KTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMH-N 81
           K+ +   Q+ AQ+    L   P  LS +L   ++ N L+   +  +FN +  P T +   
Sbjct: 19  KSKSQAKQLHAQILRTSL-PSPSLLSTILSIYSNLNLLH--DSLLIFNSLPSPPTTLAWK 75

Query: 82  TMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKM 141
           ++IR YT       +LSF++ M   G   D+  +P VLK+C ++  L  G  +HG ++++
Sbjct: 76  SIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRL 135

Query: 142 GFLCDVFVVNGLIGMYSKCGHM---GCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAR 198
           G   D++  N L+ MYSK   +      + VF+  +  D+ S     +   E   +G  R
Sbjct: 136 GMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYS-----KKEKESYYLGSLR 190

Query: 199 EVFDEMPQKDAISWSIMIDG---------------------YRKKKGDISSARILF-EHM 236
           +VF+ MP++D +SW+ +I G                      R     +SS   +F E++
Sbjct: 191 KVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYV 250

Query: 237 PI----------------KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMID 280
            +                 D+   +S+ID YAK   +  + ++F  +P+ +  SW+ +I 
Sbjct: 251 NLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIA 310

Query: 281 GYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM 340
           G  Q+G   E L  F++ML   ++P+ +S    + ACA +  L LGK +H ++ RSR   
Sbjct: 311 GCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDG 370

Query: 341 DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME 400
           ++ + +AL+DMY KCG++  AR IF  M   +++S+  MI G  ++G   +A+  F +ME
Sbjct: 371 NVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRME 430

Query: 401 TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460
            EG+  + + F+ VL ACSH+GL  E ++ F SM +   I P LEHY+ + DLL R G L
Sbjct: 431 VEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRL 490

Query: 461 EQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520
           E+A   +  M ++P  ++W TLL ACR H+N+ LAE V + L  +   + G YVLLSNIY
Sbjct: 491 EEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIY 550

Query: 521 ADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE----IFDVQSEELELVI 576
           + AG W+ A ++R  MR + +KK+   S IEI   +  FV+G+     +D  +E L++++
Sbjct: 551 SAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLL 610

Query: 577 Q 577
           +
Sbjct: 611 E 611


>gi|116310106|emb|CAH67125.1| H0315E07.3 [Oryza sativa Indica Group]
 gi|222628896|gb|EEE61028.1| hypothetical protein OsJ_14863 [Oryza sativa Japonica Group]
          Length = 655

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 173/523 (33%), Positives = 276/523 (52%), Gaps = 28/523 (5%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM----------------KRKG 107
           +A  LFN+I   N    N M+ GY ++   ++A   +  M                KRK 
Sbjct: 114 EARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKH 173

Query: 108 L-----LVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVV--NGLIGMYSKC 160
           +     L D+   P       +L G VE   +    V  G +     V  N +I  Y++ 
Sbjct: 174 VREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARA 233

Query: 161 GHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR 220
           G MG A+ +F+    KD++S   ++RG+++ G +  A +VF +MP +D ++W+ M+DG+ 
Sbjct: 234 GSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGF- 292

Query: 221 KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMID 280
            +   +  A  LF  MP +D ISWN+++ GY + GD+ +A   F   P ++  SW+ +I 
Sbjct: 293 VRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLIS 352

Query: 281 GYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM 340
           GY   G    AL L  EM+  G++PD  ++   IS CA + +L  GK +H++  ++    
Sbjct: 353 GYKDEG----ALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEH 408

Query: 341 DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME 400
           D +V ++LI MY KCG + EA ++F  + +++ +++N MIA    +G  +EALK F  M 
Sbjct: 409 DALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMT 468

Query: 401 TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460
             G   D   FL +L AC+H G   EG   F+SM+    + P+ +HYSC+VDLL R+G +
Sbjct: 469 KAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFI 528

Query: 461 EQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520
            QA +    +P       W TL   C +H  + L E++   +++ +  D G+Y LLSNIY
Sbjct: 529 HQAYDFTRRIPSDHRTTAWETLFSVCNSHGEIQLGEIIARNVLKARPSDGGMYTLLSNIY 588

Query: 521 ADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           A   MW  A  +R  M++R +KKETG S IE+ G +  F S +
Sbjct: 589 AAKEMWSSAASVRGFMKERGLKKETGCSWIELKGEVVTFSSND 631



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 152/302 (50%), Gaps = 18/302 (5%)

Query: 152 GLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAIS 211
            L+  Y++CG +  AR +F     +++VSWN ++ G+   G + +ARE+FD MP +D +S
Sbjct: 101 ALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVS 160

Query: 212 WSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271
           W  MI GY K+K  +  AR LF+ MP       N+++ GY ++G + AA+ LF +M  RN
Sbjct: 161 WLTMISGYIKRK-HVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRN 219

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV 331
             SW++MI GYA+ G+   A  LF EM       DV+S    +    Q G++D   W  V
Sbjct: 220 PVSWNVMITGYARAGSMGIAQRLFDEM----PEKDVLSRTAIMRGYLQNGSVD-AAW-KV 273

Query: 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391
           F  +     D +    ++D +++   LD+A ++F  M  ++ IS+N ++ G    G  + 
Sbjct: 274 F--KDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDS 331

Query: 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
           A   F +      P  D I    LI    SG   EG     S     G++P     S ++
Sbjct: 332 ANAWFRR-----APNKDAISWNTLI----SGYKDEGALSLLSEMIRGGLKPDQATLSVVI 382

Query: 452 DL 453
            +
Sbjct: 383 SI 384



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 143/254 (56%), Gaps = 9/254 (3%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           +VF  N ++    +   +  AR VF+   +++ VSW  +L G+  CG + +ARE+F+ +P
Sbjct: 64  NVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELFNRIP 123

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
            ++ +SW+ M+ GY  + G +  AR LF+ MP +D +SW +MI GY K   +  A++LF+
Sbjct: 124 DRNVVSWNAMVSGY-ARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFD 182

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
            MP       + ++ GY + G  + A  LF +M  Q   P   +VM  I+  A+ G++ +
Sbjct: 183 SMPSPPTSVCNALLSGYVELGYMRAAEVLFGQM--QTRNPVSWNVM--ITGYARAGSMGI 238

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
            + +   M       D++ +TA++  Y++ GS+D A ++F  M  ++ +++N M+ G   
Sbjct: 239 AQRLFDEMPEK----DVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVR 294

Query: 386 NGFGEEALKCFAQM 399
           N   ++ALK F++M
Sbjct: 295 NDRLDDALKLFSEM 308



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 185/372 (49%), Gaps = 21/372 (5%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           DVF  N  I  + + G +  AR VF+    +++ +WN ++ G +    + +AR+VFD MP
Sbjct: 33  DVFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMP 92

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
            ++++SW+ ++ GY  + G ++ AR LF  +P ++++SWN+M+ GYA+ G +  A++LF+
Sbjct: 93  VRNSVSWAALLTGY-ARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFD 151

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
            MP R+  SW  MI GY +  + +EA  LF  M      P        +S   ++G +  
Sbjct: 152 MMPWRDDVSWLTMISGYIKRKHVREARELFDSM----PSPPTSVCNALLSGYVELGYMRA 207

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
            + +   M+    T + +    +I  Y + GS+  A+R+F  M +K+V+S   ++ G   
Sbjct: 208 AEVLFGQMQ----TRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQ 263

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           NG  + A K F  M      +D + +  ++     +    +  ++F  M     I     
Sbjct: 264 NGSVDAAWKVFKDMPH----RDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQIS---- 315

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
            ++ ++    + G+++ A       P K  ++ W TL+   ++   ++L   ++ G   L
Sbjct: 316 -WNAILQGYVQQGDMDSANAWFRRAPNKDAIS-WNTLISGYKDEGALSLLSEMIRG--GL 371

Query: 506 KADDCGLYVLLS 517
           K D   L V++S
Sbjct: 372 KPDQATLSVVIS 383



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 124/301 (41%), Gaps = 81/301 (26%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +M  A+RLF+++ + +      ++RGY Q+ +   A   + +M                 
Sbjct: 235 SMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMP---------------- 278

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
                         H + V    + D FV N           +  A  +F     +D +S
Sbjct: 279 --------------HRDTVAWNTMMDGFVRN---------DRLDDALKLFSEMPDRDQIS 315

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK--------------KGDI 226
           WN +L+G+V+ G+M  A   F   P KDAISW+ +I GY+ +              K D 
Sbjct: 316 WNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDEGALSLLSEMIRGGLKPDQ 375

Query: 227 SSARIL------------------------FEHMPIKDLISWNSMIDGYAKIGDLVAAQQ 262
           ++  ++                        FEH    D +  +S+I  Y+K G +  A Q
Sbjct: 376 ATLSVVISICASLVSLGCGKMVHLWAIKTGFEH----DALVMSSLISMYSKCGLISEASQ 431

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F  + +R+  +W+ MI  YA HG   EAL +F  M   G RPD  + +  +SACA  G 
Sbjct: 432 VFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGY 491

Query: 323 L 323
           L
Sbjct: 492 L 492


>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
          Length = 1349

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 194/618 (31%), Positives = 318/618 (51%), Gaps = 81/618 (13%)

Query: 23  KTTTHILQILAQLTTNDLITEPFTLSQLLMSLTS----PNTLNMDQAERLFNQIYQPNTY 78
           +T     ++ A LTT+  +  P +   LL SL +     + L++  A  LF+++   +T+
Sbjct: 10  RTVRQAAELHAHLTTSGRLLHPPSAHHLLNSLVNCLPPSDPLHLRYALHLFDRM-PASTF 68

Query: 79  MHNTMIRGY----TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK-ACGVLMGLVEGTE 133
           + +T +R      T S +P      +  M+R  +  D +T+ F+ K +       +  T 
Sbjct: 69  LFDTALRACFRAGTSSGDPDIPFVLFRRMRRAAVRPDGFTFHFLFKCSSSSRPRALLCTM 128

Query: 134 IHGEVVK-MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           +H   ++ M      FV N LI MY++ G  G  R  F+   +KD VSW +V+ G  + G
Sbjct: 129 LHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMG 188

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGY----RKKKG---------------DISSARILF 233
            +  AR +  + P +D ISW+ +I  Y    R K+                D++   +L 
Sbjct: 189 MLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLS 248

Query: 234 EHMPIKDL----------------ISWN---SMIDGYAKIGDLVAAQQLFNEMPE-RNVF 273
               +KDL                +S N   ++ID YAK GD   A+++F+ +   R   
Sbjct: 249 ACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQ 308

Query: 274 SWSIMIDGYAQHGNP-------------------------------KEALYLFREMLCQG 302
           SW+ +IDGY +HG+                                +EAL LF  M    
Sbjct: 309 SWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHD 368

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           +R D  +V+  +SACA +GAL  G+ +H  ++   +  D+ + TAL+DMYMKCG ++EA 
Sbjct: 369 LRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEAT 428

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
            +F  M K++V ++  MIAGL  NG G+  L+ F QM  +G   + + ++ VL ACSHS 
Sbjct: 429 IVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSC 488

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
           L  EG   F  M+    I P++EHY C++DLL R+G L++A+++V++MPM+PN  +W ++
Sbjct: 489 LLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASI 548

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
           L ACR H+ + LA+   E L++++ D+  +YV L NI  D+  WE A +IR +M +R++K
Sbjct: 549 LSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLMEERQVK 608

Query: 543 KETGRSVIEIDGNIKEFV 560
           K  G S + + G + +FV
Sbjct: 609 KTAGYSSVTVAGQVHKFV 626



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 142/546 (26%), Positives = 264/546 (48%), Gaps = 25/546 (4%)

Query: 24   TTTHILQILAQLTTNDLITEPFTLSQLL---MSLTSPNTLNMDQAERLFNQIYQPNTYMH 80
            +T   LQ+  ++    L   PF  S L+   M + SP+      +  LF ++   NT M 
Sbjct: 808  STYEALQLHGRVLALGLCCNPFVGSALVNHYMHVESPHA-----SLSLFRELPLQNTAMC 862

Query: 81   NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG--LVEGTEIHGEV 138
            N ++RG       ++ +  +++M+R+ L ++  +Y + +K C    G  L +G ++HG V
Sbjct: 863  NVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGC-YQNGEWLEQGRQLHGVV 921

Query: 139  VKMGFL-CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKA 197
            +K G++  ++F+ N L+ +YS  G              +D++SWN +L  + + G M +A
Sbjct: 922  LKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEA 981

Query: 198  REVFDEM---PQKDAISWSIMIDGYRKKKGD----ISSARILFE-HMPIKDLISWNSMID 249
                 +M    +  +I   + +     K GD    +    I+ +       +    ++ID
Sbjct: 982  VYYLKQMLWHGKMPSIRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLID 1041

Query: 250  GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
             Y K      +  +FNE+P   +   + +I    +      AL +   M+ +GV PD ++
Sbjct: 1042 MYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLRCNMFDAALEILHCMIVEGVTPDDVT 1101

Query: 310  ---VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
                M AIS  A   +L   + +H  + +    MDM V ++LI  Y   G L  +  IF 
Sbjct: 1102 FSATMKAISLSAS-PSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFE 1160

Query: 367  SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
             +   NVI +  +I+     G G  A++ F QM + G+  D++ FL  +  C  +G+  E
Sbjct: 1161 GLLDPNVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEE 1220

Query: 427  GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
            G  + + M+    ++P   H++C+V+LLSR G +++A+ ++E  P++     W +LL +C
Sbjct: 1221 GRLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSC 1280

Query: 487  RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
            + H    L +     L+++   D    + +SN + D G  E ALRI++M   +++KK +G
Sbjct: 1281 KAHGENVLGKRAANMLIDVGRKDPATTLQVSNFFNDIGDRETALRIKEMTNVKEVKK-SG 1339

Query: 547  RSVIEI 552
             S+IE+
Sbjct: 1340 HSLIEV 1345



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 126/502 (25%), Positives = 224/502 (44%), Gaps = 35/502 (6%)

Query: 81   NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
            N MI G+ +     +A + Y  M   G+    +T+  +L  C       E  ++HG V+ 
Sbjct: 766  NRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTY----EALQLHGRVLA 821

Query: 141  MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
            +G  C+ FV + L+  Y        + S+F    +++    N+VLRG    G +    E+
Sbjct: 822  LGLCCNPFVGSALVNHYMHVESPHASLSLFRELPLQNTAMCNVVLRGL---GNLKLTEEL 878

Query: 201  ---FDEMPQK----DAISWSIMIDGYRKKKGDISSARILFE------HMPIKDLISWNSM 247
               F +M ++    + +S+   + G  +    +   R L         +P    +S NS+
Sbjct: 879  ICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIFLS-NSL 937

Query: 248  IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
            +D Y+ IGD V   +  N++   +V SW+ ++  YA  G+ KEA+Y  ++ML  G  P +
Sbjct: 938  VDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSI 997

Query: 308  ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI-VQTALIDMYMKCGSLDEARRIFY 366
             S +  ++   + G   LG  IH  + +   +   + VQT LIDMY KC   D +  IF 
Sbjct: 998  RSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFN 1057

Query: 367  SMTKKNVISYNVMI-AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
             +    +   N +I + L  N F + AL+    M  EG+  DD+ F   + A S S   +
Sbjct: 1058 EIPSIALECCNSLITSSLRCNMF-DAALEILHCMIVEGVTPDDVTFSATMKAISLSASPS 1116

Query: 426  -EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
                ++  S     G E  +   S L+   + AG+L  +  I E + + PN+  +  ++ 
Sbjct: 1117 LTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGL-LDPNVICFTAIIS 1175

Query: 485  ACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
            AC  + +   A  + + +V   LK D+      ++     AGM+E    + ++MR  +  
Sbjct: 1176 ACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGC-DQAGMFEEGRLVIELMRASREL 1234

Query: 543  KETGR------SVIEIDGNIKE 558
                R      +++  DG +KE
Sbjct: 1235 DPDERHFACMVNLLSRDGFVKE 1256



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 66/311 (21%), Positives = 136/311 (43%), Gaps = 23/311 (7%)

Query: 175  IKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSAR 230
            ++D+ S N ++ GF+  G   +AR V+  M     ++   ++S ++      +      R
Sbjct: 759  VRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEALQLHGR 818

Query: 231  ILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
            +L   +     +  +++++ Y  +    A+  LF E+P +N    ++++ G       +E
Sbjct: 819  VLALGLCCNPFVG-SALVNHYMHVESPHASLSLFRELPLQNTAMCNVVLRGLGNLKLTEE 877

Query: 291  ALYLFREMLCQGVRPDVISVMGAISACAQVGA-LDLGKWIH-VFMKRSRITMDMIVQTAL 348
             +  F +M  Q +  + +S   A+  C Q G  L+ G+ +H V +K   I  ++ +  +L
Sbjct: 878  LICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIFLSNSL 937

Query: 349  IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD 408
            +D+Y   G   +  +    +  ++VIS+N +++     G  +EA+    QM   G     
Sbjct: 938  VDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSI 997

Query: 409  LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC--------LVDLLSRAGEL 460
              F+ +L     +G    G +I        GI  KL  +SC        L+D+  +    
Sbjct: 998  RSFVSLLALSGKTGDWQLGVQIH-------GIVHKLG-FSCSSVHVQTTLIDMYGKCCCF 1049

Query: 461  EQALNIVESMP 471
            + +L I   +P
Sbjct: 1050 DHSLAIFNEIP 1060



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 5/194 (2%)

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326
           M  R+V S + MI G+ + G    A  ++R M+  G+R    +    +  C+   AL L 
Sbjct: 757 MAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEALQL- 815

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
              H  +    +  +  V +AL++ YM   S   +  +F  +  +N    NV++ GLG  
Sbjct: 816 ---HGRVLALGLCCNPFVGSALVNHYMHVESPHASLSLFRELPLQNTAMCNVVLRGLGNL 872

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
              EE + CF  M  + +  + L +   +  C  +G   E  R    +    G  P    
Sbjct: 873 KLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIF 932

Query: 447 YS-CLVDLLSRAGE 459
            S  LVDL S  G+
Sbjct: 933 LSNSLVDLYSAIGD 946


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 172/477 (36%), Positives = 277/477 (58%), Gaps = 47/477 (9%)

Query: 134 IHGEVVKMGFLCDVFVVNGLIGM---------YSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           IHG +++   + DVFV + L+ +         +     +G A  +F   +  +L  +N++
Sbjct: 31  IHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGIFSQIQNPNLFVFNVL 90

Query: 185 LRGFVECGEMGKAREVFDEMPQK----DAISWSIMI------------------------ 216
           +R F    E  KA   + +M +     D I++  +I                        
Sbjct: 91  IRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVVGEQTHSQIVRFGF 150

Query: 217 --DGYRKKK--------GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNE 266
             D Y +          G I++A  +F  MP +D++SW SM+ GY K G +  A+++F+E
Sbjct: 151 QNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDE 210

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326
           MP RN+F+WSIMI+GYA++   ++A+ LF  M  +GV  +   ++  IS+CA +GAL+ G
Sbjct: 211 MPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFG 270

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
           +  H ++ +S +T+++I+ TAL+DMY +CG +++A R+F  +  K+ +S++ +I GL ++
Sbjct: 271 ERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVH 330

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
           G   +A+  F+QM   G    D+    VL ACSH GL  +G  I+++MKR  GIEP+LEH
Sbjct: 331 GHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEH 390

Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506
           Y C+VD+L RAG+L +A N +  MP+KPN  + G LL AC+ ++N  +AE V   L+E+K
Sbjct: 391 YGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIEVK 450

Query: 507 ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
            +  G YVLLSNIYA AG WE    +R +M+++ +KK  G S+IEIDG I +F  G+
Sbjct: 451 PEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEIDGKINKFSMGD 507



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 123/419 (29%), Positives = 206/419 (49%), Gaps = 50/419 (11%)

Query: 1   MKTLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLM-------- 52
           M  +       K+P ++LLQ   + + +  I   L    LI++ F  S+LL         
Sbjct: 1   MSNIVLNTLRFKHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDS 60

Query: 53  SLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDN 112
           +   P  L +  A  +F+QI  PN ++ N +IR ++  + P KA  FY  M +  +  DN
Sbjct: 61  TFHKPTNL-LGYAYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDN 119

Query: 113 YTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG 172
            T+PF++KA   +  +V G + H ++V+ GF  DV+V N L+ MY+ CG +  A  +F  
Sbjct: 120 ITFPFLIKASTEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQ 179

Query: 173 SEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK--------- 223
              +D+VSW  ++ G+ +CG +  ARE+FDEMP ++  +WSIMI+GY K           
Sbjct: 180 MPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF 239

Query: 224 ------------------------------GDISSARILFEHMPIKDLISWNSMIDGYAK 253
                                         G+ +   ++  HM + +LI   +++D Y +
Sbjct: 240 ELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTV-NLILGTALVDMYWR 298

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313
            G++  A ++F E+P+++  SWS +I G A HG+  +A++ F +M+  G  P  I++   
Sbjct: 299 CGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAV 358

Query: 314 ISACAQVGALDLGKWIHVFMKRSR-ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
           +SAC+  G +D G  I+  MKR   I   +     ++DM  + G L EA      M  K
Sbjct: 359 LSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVK 417


>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
          Length = 485

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 152/361 (42%), Positives = 229/361 (63%), Gaps = 1/361 (0%)

Query: 218 GYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSI 277
           G   K G +  AR++F+++  K+ ++WN+MIDGY + G +  A  +F++MP+R++ SW+ 
Sbjct: 102 GMYSKSGHLRKARLVFDYIEDKNSVTWNTMIDGYMRNGQVDNAVDVFDKMPDRDLISWTA 161

Query: 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337
           MI G+ + G  +EAL  FREM   GV PD ++++ A++AC  +GAL  G W+H ++    
Sbjct: 162 MITGFVKKGFHEEALAWFREMQISGVNPDYVAIISAVAACTNLGALSFGLWVHRYVLSQD 221

Query: 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFA 397
              ++ V  +LID+Y +CG ++ AR++F  M K+ V+S+N +I G   NG   E+L  F 
Sbjct: 222 FRNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNANESLVYFR 281

Query: 398 QMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA 457
           +M+ EG   D + F G L ACSH GL  EG++ FQ MK    I P++EHY CLVDL SRA
Sbjct: 282 KMQREGFTPDGVTFTGALTACSHVGLVEEGFQYFQMMKHDYRISPRIEHYGCLVDLYSRA 341

Query: 458 GELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT-LAEVVVEGLVELKADDCGLYVLL 516
           G LE A  +VESMPMKPN  + G+LL ACRNH N T LAE +++ + +L       YV+L
Sbjct: 342 GRLEDAFIVVESMPMKPNEVVIGSLLAACRNHGNHTILAERLMKYITDLDVKSHSNYVIL 401

Query: 517 SNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
           SN+YA  G WE A ++R+ M+   +KK+ G S IEID     F++G+   V++  +  V+
Sbjct: 402 SNMYAADGKWEGASKMRRKMKGLGLKKQPGYSSIEIDDCTHVFMAGDSAHVETAYIREVL 461

Query: 577 Q 577
           +
Sbjct: 462 E 462



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 103/320 (32%), Positives = 164/320 (51%), Gaps = 44/320 (13%)

Query: 95  KALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE--IHGEVVKMGF-LCDVFVVN 151
           +A+  + +M+  G+  ++ T+  +L ACG      EG    +HG   K+G     V V  
Sbjct: 39  EAVREFSDMRLAGIEPNHITFIALLSACGNFPSGSEGLGYLLHGYACKLGLERSHVMVGT 98

Query: 152 GLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAIS 211
            ++GMYSK GH+  AR VF+  E K+ V+WN ++ G++  G++  A +VFD+MP +D IS
Sbjct: 99  AILGMYSKSGHLRKARLVFDYIEDKNSVTWNTMIDGYMRNGQVDNAVDVFDKMPDRDLIS 158

Query: 212 WSIMIDGYRKKKGDISSARILFEHMPIK----DLIS------------------W----- 244
           W+ MI G+  KKG    A   F  M I     D ++                  W     
Sbjct: 159 WTAMITGF-VKKGFHEEALAWFREMQISGVNPDYVAIISAVAACTNLGALSFGLWVHRYV 217

Query: 245 ------------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
                       NS+ID Y + G +  A+Q+F++M +R V SW+ +I G+A +GN  E+L
Sbjct: 218 LSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNANESL 277

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS-RITMDMIVQTALIDM 351
             FR+M  +G  PD ++  GA++AC+ VG ++ G      MK   RI+  +     L+D+
Sbjct: 278 VYFRKMQREGFTPDGVTFTGALTACSHVGLVEEGFQYFQMMKHDYRISPRIEHYGCLVDL 337

Query: 352 YMKCGSLDEARRIFYSMTKK 371
           Y + G L++A  +  SM  K
Sbjct: 338 YSRAGRLEDAFIVVESMPMK 357



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 10/216 (4%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A  +F+++   +      MI G+ +    ++AL+++  M+  G+  D       + A
Sbjct: 141 VDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIISAVAA 200

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G  +H  V+   F  +V V N LI +Y +CG +  AR VF+  E + +VSW
Sbjct: 201 CTNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSW 260

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMP 237
           N V+ GF   G   ++   F +M ++    D ++++  +       G +      F+ M 
Sbjct: 261 NSVIVGFAANGNANESLVYFRKMQREGFTPDGVTFTGALTAC-SHVGLVEEGFQYFQMMK 319

Query: 238 IKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP 268
               IS     +  ++D Y++ G L  A  +   MP
Sbjct: 320 HDYRISPRIEHYGCLVDLYSRAGRLEDAFIVVESMP 355


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  314 bits (804), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 184/537 (34%), Positives = 274/537 (51%), Gaps = 73/537 (13%)

Query: 95  KALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGF-LCDVFVVNGL 153
           +A+S   N+ R+GL +D+ T   +L+ C     L EG  +H  +   G      F+ N L
Sbjct: 42  EAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHL 101

Query: 154 IGMYSKCGH-------------------------------MGCARSVFEGSEIKDLVSWN 182
           I MY+KCG                                +  AR +F+    KD+VSWN
Sbjct: 102 INMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWN 161

Query: 183 LVLRGFVECGEMGKAREVFDEMPQ------------------------------------ 206
            ++    +CG   +A   + E  Q                                    
Sbjct: 162 TMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVA 221

Query: 207 ---KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQL 263
               + +  S ++D Y  K G +  AR LF+ M  +D+++W +M+ GYAK GD+ +A +L
Sbjct: 222 GFLSNVVLSSSVLDAY-VKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANEL 280

Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL 323
           F EMPE+N  SW+ +I GYA++G   +AL LF +M+   VRPD  +    + ACA + +L
Sbjct: 281 FVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASL 340

Query: 324 DLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK-NVISYNVMIAG 382
             GK IH ++ R     + IV +ALIDMY KCGSL   R++F  M  K +V+ +N +I+ 
Sbjct: 341 KHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISA 400

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
           L  +G GEEA++    M   G   D + F+ +L ACSHSGL  +G   F+SM    GI P
Sbjct: 401 LAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVP 460

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
             EHY+CL+DLL RAG  E+ ++ +E MP KP+  +W  LL  CR H ++ L     E L
Sbjct: 461 SQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERL 520

Query: 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEF 559
           +EL+      YVLLS+IYA  G WE   ++R++M +R++KKE   S +EI+  +  F
Sbjct: 521 IELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAISWLEIENKVHSF 577



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 105/215 (48%), Gaps = 14/215 (6%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +M  A  LF ++ + N      +I GY ++    KAL  +  M    +  D +T+   L 
Sbjct: 273 DMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLC 332

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE--GSEIKDL 178
           AC  +  L  G +IH  ++++ F  +  VV+ LI MYSKCG +G  R VF+  G+++ D+
Sbjct: 333 ACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKL-DV 391

Query: 179 VSWNLVLRGFVE--CGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARIL 232
           V WN ++    +  CGE  +A ++ D+M     + D I++ ++++      G +      
Sbjct: 392 VLWNTIISALAQHGCGE--EAIQMLDDMVRSGAKPDKITFVVILNAC-SHSGLVQQGLNF 448

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
           FE M     I  +   + YA + DL+     F E+
Sbjct: 449 FESMSCDYGIVPSQ--EHYACLIDLLGRAGCFEEV 481


>gi|356518777|ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 737

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 169/493 (34%), Positives = 271/493 (54%), Gaps = 36/493 (7%)

Query: 115 YPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174
           Y F++  C     +     +HG ++K     D F+ NGLI  YSKCG    A   F    
Sbjct: 13  YSFLISKCITARRVKLANAVHGHLIKTALFFDAFLANGLIDAYSKCGCEESAHKTFGDLP 72

Query: 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAIS----------------------- 211
            K   SWN ++  + + G   +A  +FD+MPQ++ +S                       
Sbjct: 73  NKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQRNVVSYNSLISGNLQWLRQVHGVAVIVG 132

Query: 212 --WSI-----MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
             W++     +ID Y  K G+ + +  +F +MP ++++SW SM+  Y +   L  A ++F
Sbjct: 133 MEWNVILNNALIDAY-GKCGEPNLSFSVFCYMPERNVVSWTSMVVAYTRACRLDEACRVF 191

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
            +MP +N  SW+ ++ G+ ++G   EA  +F++ML +GVRP   + +  I ACAQ   + 
Sbjct: 192 KDMPVKNTVSWTALLTGFVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSVIDACAQEALIG 251

Query: 325 LGKWIH---VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
            GK +H   +   +S    ++ V  ALIDMY KCG +  A  +F     ++V+++N +I 
Sbjct: 252 RGKQVHGQIIRGDKSGNLFNVYVCNALIDMYAKCGDMKSAENLFEMAPMRDVVTWNTLIT 311

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
           G   NG GEE+L  F +M    +  + + FLGVL  C+H+GL  EG ++   M+R  G++
Sbjct: 312 GFAQNGHGEESLAVFRRMIEAKVEPNHVTFLGVLSGCNHAGLDNEGLQLVDLMERQYGVK 371

Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMP--MKPNLALWGTLLLACRNHQNVTLAEVVV 499
           PK EHY+ L+DLL R   L +A++++E +P  +K ++A+WG +L ACR H N+ LA    
Sbjct: 372 PKAEHYALLIDLLGRRNRLMEAMSLIEKVPDGIKNHIAVWGAVLGACRVHGNLDLARKAA 431

Query: 500 EGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEF 559
           E L EL+ ++ G YV+L+NIYA +G W  A RIR +M++R ++KE   S IE+     EF
Sbjct: 432 EKLFELEPENTGRYVMLANIYAASGKWGGAKRIRNVMKERCLEKEPACSRIELRNARHEF 491

Query: 560 VSGEIFDVQSEEL 572
           V+ + F  Q EE+
Sbjct: 492 VAKDKFHPQVEEI 504



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 3/146 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D+A R+F  +   NT     ++ G+ ++    +A   +  M  +G+     T+  V+ A
Sbjct: 184 LDEACRVFKDMPVKNTVSWTALLTGFVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSVIDA 243

Query: 122 CGVLMGLVEGTEIHGEVV---KMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDL 178
           C     +  G ++HG+++   K G L +V+V N LI MY+KCG M  A ++FE + ++D+
Sbjct: 244 CAQEALIGRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYAKCGDMKSAENLFEMAPMRDV 303

Query: 179 VSWNLVLRGFVECGEMGKAREVFDEM 204
           V+WN ++ GF + G   ++  VF  M
Sbjct: 304 VTWNTLITGFAQNGHGEESLAVFRRM 329


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 178/517 (34%), Positives = 288/517 (55%), Gaps = 8/517 (1%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           +A+RLF+ +   +    N MI G +       A+   + M+ +G+  ++ T   VL   G
Sbjct: 162 EAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVG 221

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
               L  G  +HG  V+  F   V V  GL+ MY+KC  +  AR +F+   +++ VSW+ 
Sbjct: 222 EAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSA 281

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR----KKKGDISSARILFEHM--- 236
           ++ G+V    M +A E+FD+M  KDA+  + +  G       K  D+S  R L  ++   
Sbjct: 282 MIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKL 341

Query: 237 -PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
             + D++  N+++  YAK G +  A + F+EM  ++  S+S ++ G  Q+GN   AL +F
Sbjct: 342 GSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIF 401

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
           R M   G+ PD+ +++G + AC+ + AL  G   H ++       D ++  ALIDMY KC
Sbjct: 402 RMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKC 461

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
           G +  AR +F  M + +++S+N MI G G++G G EAL  F  +   G+  DD+ F+ +L
Sbjct: 462 GKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLL 521

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
            +CSHSGL  EG   F +M R   I P++EH  C+VD+L RAG +++A + + +MP +P+
Sbjct: 522 SSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPD 581

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535
           + +W  LL ACR H+N+ L E V + +  L  +  G +VLLSNIY+ AG W+ A  IR  
Sbjct: 582 VRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRIT 641

Query: 536 MRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            +   +KK  G S IEI+G +  FV G+   +Q  ++
Sbjct: 642 QKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQI 678



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 159/564 (28%), Positives = 262/564 (46%), Gaps = 27/564 (4%)

Query: 8   KFSLKNPLVSLLQI---SKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQ 64
           +F +KN  + LL+    SK+ T   +I      N    +   L +L     S N + +  
Sbjct: 4   RFEVKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVL-- 61

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A RLF++I  P+  + N +IR Y  +     A+  Y +M   G+  + YTYPFVLKAC  
Sbjct: 62  ARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSG 121

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L+ + +G EIH      G   DVFV   L+  Y+KCG +  A+ +F     +D+V+WN +
Sbjct: 122 LLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAM 181

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGD---ISSARILFEHMPIKD- 240
           + G    G    A ++  +M ++     S  I G     G+   +   + L  +   +  
Sbjct: 182 IAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSF 241

Query: 241 ---LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
              ++    ++D YAK   L+ A+++F+ M  RN  SWS MI GY      KEAL LF +
Sbjct: 242 DNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQ 301

Query: 298 MLCQ-GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
           M+ +  + P  +++   + ACA++  L  G+ +H ++ +    +D+++   L+ MY KCG
Sbjct: 302 MILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCG 361

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
            +D+A R F  M  K+ +S++ +++G   NG    AL  F  M+  GI  D    LGVL 
Sbjct: 362 VIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLP 421

Query: 417 ACSH-----SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           ACSH      G  + GY I +      G        + L+D+ S+ G++  A  +   M 
Sbjct: 422 ACSHLAALQHGFCSHGYLIVR------GFATDTLICNALIDMYSKCGKISFAREVFNRMD 475

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLSNIYADAGMWEHA 529
            + ++  W  +++    H     A  +   L+   LK DD     LLS+      + E  
Sbjct: 476 -RHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGR 534

Query: 530 LRIRKMMRKRKIKKETGRSVIEID 553
           L    M R   I       +  +D
Sbjct: 535 LWFDAMSRDFSIVPRMEHCICMVD 558


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 187/535 (34%), Positives = 285/535 (53%), Gaps = 45/535 (8%)

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
           ++PN      +I G  Q+    +ALS +  M  +G+  ++ T    + AC  L  L  G 
Sbjct: 323 FKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGR 382

Query: 133 EIHGEVVKMGFL-CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
           EIHG  +K+  L  D+ V N L+  Y+KC  +  AR  F   +  DLVSWN +L G+   
Sbjct: 383 EIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALR 442

Query: 192 GEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHM------PIKDL 241
           G   +A E+  EM     + D I+W+ ++ G+  + GD  +A   F+ M      P    
Sbjct: 443 GSHEEAIELLSEMKFQGIEPDIITWNGLVTGF-TQYGDGKAALEFFQRMHSMGMDPNTTT 501

Query: 242 ISW---------------------------------NSMIDGYAKIGDLVAAQQLFNEMP 268
           IS                                  +++I  Y+    L  A  +F+E+ 
Sbjct: 502 ISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELS 561

Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328
            R+V  W+ +I   AQ G    AL L REM    V  + ++++ A+ AC+++ AL  GK 
Sbjct: 562 TRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKE 621

Query: 329 IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
           IH F+ R  +     +  +LIDMY +CGS+ ++RRIF  M +++++S+NVMI+  GM+GF
Sbjct: 622 IHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGF 681

Query: 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
           G +A+  F    T G+  + + F  +L ACSHSGL  EG++ F+ MK    ++P +E Y+
Sbjct: 682 GMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYA 741

Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508
           C+VDLLSRAG+  + L  +E MP +PN A+WG+LL ACR H N  LAE     L EL+  
Sbjct: 742 CMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQ 801

Query: 509 DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
             G YVL++NIY+ AG WE A +IR +M++R + K  G S IE+   +  FV G+
Sbjct: 802 SSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGD 856



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 115/419 (27%), Positives = 210/419 (50%), Gaps = 35/419 (8%)

Query: 29  LQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYT 88
            Q+ AQL  N +    F  S+LL       T  ++ A R+F+++ + N +    ++  Y 
Sbjct: 109 FQVHAQLVVNGVDVCEFLGSRLLEVYC--QTGCVEDARRMFDKMSERNVFSWTAIMEMYC 166

Query: 89  QSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF 148
              + ++ +  +  M  +G+  D++ +P V KAC  L     G +++  ++ +GF  +  
Sbjct: 167 GLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSC 226

Query: 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP--- 205
           V   ++ M+ KCG M  AR  FE  E KD+  WN+++ G+   GE  KA +   +M    
Sbjct: 227 VKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSG 286

Query: 206 -QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
            + D ++W+ +I GY +      +++   E   +KD                        
Sbjct: 287 VKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDF----------------------- 323

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
               + NV SW+ +I G  Q+G   EAL +FR+M+ +GV+P+ I++  A+SAC  +  L 
Sbjct: 324 ----KPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLR 379

Query: 325 LGKWIHVF-MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383
            G+ IH + +K   +  D++V  +L+D Y KC S++ ARR F  + + +++S+N M+AG 
Sbjct: 380 HGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGY 439

Query: 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
            + G  EEA++  ++M+ +GI  D + + G++   +  G        FQ M    G++P
Sbjct: 440 ALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRM-HSMGMDP 497



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 132/245 (53%), Gaps = 3/245 (1%)

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           +++ Y + G +  A+++F++M ERNVFSW+ +++ Y   G+ +E + LF  M+ +GVRPD
Sbjct: 130 LLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPD 189

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
                    AC+++    +GK ++ +M       +  V+ +++DM++KCG +D ARR F 
Sbjct: 190 HFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFE 249

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            +  K+V  +N+M++G    G  ++ALKC + M+  G+  D + +  ++   + SG   E
Sbjct: 250 EIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEE 309

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM---KPNLALWGTLL 483
             + F  M      +P +  ++ L+    + G   +AL++   M +   KPN     + +
Sbjct: 310 ASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAV 369

Query: 484 LACRN 488
            AC N
Sbjct: 370 SACTN 374



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 112/251 (44%), Gaps = 15/251 (5%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A  +F+++   +  + N++I    QS     AL     M    + V+  T    L 
Sbjct: 549 SLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALP 608

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L +G EIH  +++ G     F++N LI MY +CG +  +R +F+    +DLVS
Sbjct: 609 ACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVS 668

Query: 181 WNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           WN+++  +   G    A  +F        + + I+++ ++       G I      F+ M
Sbjct: 669 WNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSAC-SHSGLIEEGWKYFKMM 727

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNE-------MP-ERNVFSWSIMIDGYAQHGNP 288
             K   + +  ++ YA + DL++    FNE       MP E N   W  ++     H NP
Sbjct: 728 --KTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNP 785

Query: 289 KEALYLFREML 299
             A Y  R + 
Sbjct: 786 DLAEYAARYLF 796



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 109/236 (46%), Gaps = 21/236 (8%)

Query: 305 PD-VISVMGAI-SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           PD  I +  +I   C ++  L LG  +H  +  + + +   + + L+++Y + G +++AR
Sbjct: 85  PDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDAR 144

Query: 363 RIFYSMTKKNVISYNV---MIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           R+F  M+++NV S+     M  GLG     EE +K F  M  EG+  D  +F  V  ACS
Sbjct: 145 RMFDKMSERNVFSWTAIMEMYCGLGDY---EETIKLFYLMVNEGVRPDHFVFPKVFKACS 201

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSC----LVDLLSRAGELEQALNIVESMPMKPN 475
                 + YR+ + +  +  +    E  SC    ++D+  + G ++ A    E +  K +
Sbjct: 202 E----LKNYRVGKDVYDYM-LSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-D 255

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEG--LVELKADDCGLYVLLSNIYADAGMWEHA 529
           + +W  ++    +      A   +    L  +K D      ++S  YA +G +E A
Sbjct: 256 VFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISG-YAQSGQFEEA 310


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 178/507 (35%), Positives = 290/507 (57%), Gaps = 10/507 (1%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A  LF+ +   +    N MI G  Q+ N  +AL     M+ +G+ ++  T   +L  C  
Sbjct: 269 ARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQ 328

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L  +     IH  V+K G   D+FV N LI MY+K G++  AR  F+   I D+VSWN +
Sbjct: 329 LGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSI 388

Query: 185 LRGFVECGEMGKAREVFDEMP----QKDAISW----SIMIDGYRKKKGDISSARILFEHM 236
           +  + +  +   A   F +M     Q D ++     SI+      K        I+    
Sbjct: 389 IAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGW 448

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
            ++D++  N+++D YAK+G L +A ++F  +P ++V SW+ +I GYAQ+G   EA+ +++
Sbjct: 449 LMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYK 508

Query: 297 EML-CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
            M  C+ + P+  + +  + A A VGAL  G  IH  + ++ + +D+ V T LID+Y KC
Sbjct: 509 MMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKC 568

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
           G L +A  +FY + +++ +++N +I+  G++G  E+ LK F +M  EG+  D + F+ +L
Sbjct: 569 GRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLL 628

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
            ACSHSG   EG   F+ M+ + GI+P L+HY C+VDLL RAG LE A + ++ MP++P+
Sbjct: 629 SACSHSGFVEEGKWCFRLMQEY-GIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPD 687

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535
            ++WG LL ACR H N+ L +   + L E+ + + G YVLLSNIYA+ G WE   ++R +
Sbjct: 688 ASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSL 747

Query: 536 MRKRKIKKETGRSVIEIDGNIKEFVSG 562
            R+R +KK  G S IE++  +  F +G
Sbjct: 748 ARERGLKKTPGWSTIEVNRKVDVFYTG 774



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 153/492 (31%), Positives = 257/492 (52%), Gaps = 30/492 (6%)

Query: 69  FNQIYQPNTYMHNTMIRGYTQSSNPQKALS-FYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           F+QI Q + Y  N+MI  Y  + +  +A+  FY  +    +  D YT+P VLKACG L  
Sbjct: 174 FDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTL-- 231

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
            V+G +IH    K+GF  +VFV   LI MYS+ G  G ARS+F+    +D+ SWN ++ G
Sbjct: 232 -VDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISG 290

Query: 188 FVECGEMGKAREVFDEMPQKDAISWS----IMIDGYRKKKGDISSARIL----FEHMPIK 239
            ++ G   +A +V DEM + + I  +    + I     + GDIS+A ++     +H    
Sbjct: 291 LIQNGNAAQALDVLDEM-RLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEF 349

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           DL   N++I+ YAK G+L  A++ F +M   +V SW+ +I  Y Q+ +P  A   F +M 
Sbjct: 350 DLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQ 409

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVF-MKRSRITMDMIVQTALIDMYMKCGSL 358
             G +PD+++++   S  AQ       + +H F M+R  +  D+++  A++DMY K G L
Sbjct: 410 LNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLL 469

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME--TEGIPKDDLIFLGVLI 416
           D A ++F  +  K+VIS+N +I G   NG   EA++ +  ME   E IP     ++ +L 
Sbjct: 470 DSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQG-TWVSILP 528

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
           A +H G   +G +I   + +   +   +   +CL+D+  + G L  A+++   +P + ++
Sbjct: 529 AYAHVGALQQGMKIHGRVIK-TNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSV 587

Query: 477 ALWGTLLLAC---RNHQNVTL---AEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530
             W   +++C     H   TL    E++ EG   +K D      LLS   + +G  E   
Sbjct: 588 T-WNA-IISCHGIHGHAEKTLKLFGEMLDEG---VKPDHVTFVSLLSAC-SHSGFVEEGK 641

Query: 531 RIRKMMRKRKIK 542
              ++M++  IK
Sbjct: 642 WCFRLMQEYGIK 653



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 158/311 (50%), Gaps = 11/311 (3%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N++ A + F Q++  +    N++I  Y Q+ +P  A  F+V M+  G   D  T   +  
Sbjct: 366 NLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLAS 425

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLC-DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
                        +HG +++ G+L  DV + N ++ MY+K G +  A  VFE   +KD++
Sbjct: 426 IVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVI 485

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAI-----SWSIMIDGYRK----KKGDISSAR 230
           SWN ++ G+ + G   +A EV+  M +   I     +W  ++  Y      ++G     R
Sbjct: 486 SWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGR 545

Query: 231 ILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
           ++  ++ + D+     +ID Y K G LV A  LF ++P+ +  +W+ +I  +  HG+ ++
Sbjct: 546 VIKTNLHL-DVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEK 604

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
            L LF EML +GV+PD ++ +  +SAC+  G ++ GKW    M+   I   +     ++D
Sbjct: 605 TLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVD 664

Query: 351 MYMKCGSLDEA 361
           +  + G L+ A
Sbjct: 665 LLGRAGYLEMA 675



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 107/432 (24%), Positives = 201/432 (46%), Gaps = 18/432 (4%)

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           +H  +V  G +  +F+   L+ +Y+  G +  +R  F+    KD+ +WN ++  +V  G 
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 197

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYR-----KKKGDISSARILFEHMPIKDLISWN--- 245
             +A   F ++     +   I  D Y      K  G +   R +      K    WN   
Sbjct: 198 FHEAIGCFYQL----LLVSEIRPDFYTFPPVLKACGTLVDGRKI-HCWAFKLGFQWNVFV 252

Query: 246 --SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
             S+I  Y++ G    A+ LF++MP R++ SW+ MI G  Q+GN  +AL +  EM  +G+
Sbjct: 253 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 312

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
           + + ++V+  +  C Q+G +     IH+++ +  +  D+ V  ALI+MY K G+L++AR+
Sbjct: 313 KMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARK 372

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
            F  M   +V+S+N +IA    N     A   F +M+  G   D L  + +    + S  
Sbjct: 373 AFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRD 432

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
                 +   + R   +   +   + +VD+ ++ G L+ A  + E +P+K ++  W TL+
Sbjct: 433 CKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVK-DVISWNTLI 491

Query: 484 LACRNHQNVTLAEVVVEGLVELKA--DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
                +   + A  V + + E K    + G +V +   YA  G  +  ++I   + K  +
Sbjct: 492 TGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNL 551

Query: 542 KKETGRSVIEID 553
             +   +   ID
Sbjct: 552 HLDVFVATCLID 563



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 21/189 (11%)

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
             K +H  +  +     + + T L+++Y   G +  +R  F  + +K+V ++N MI+   
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 193

Query: 385 MNGFGEEALKCFAQ-METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC----- 438
            NG   EA+ CF Q +    I  D   F  VL AC   G   +G +I      HC     
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKI------HCWAFKL 244

Query: 439 GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT----- 493
           G +  +   + L+ + SR G    A ++ + MP + ++  W  ++     + N       
Sbjct: 245 GFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFR-DMGSWNAMISGLIQNGNAAQALDV 303

Query: 494 LAEVVVEGL 502
           L E+ +EG+
Sbjct: 304 LDEMRLEGI 312


>gi|413935435|gb|AFW69986.1| hypothetical protein ZEAMMB73_442164 [Zea mays]
          Length = 658

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 173/528 (32%), Positives = 276/528 (52%), Gaps = 37/528 (7%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM----------------KRKG 107
           +A  LF+++   N    N M+ GY ++    +A   +  M                +RK 
Sbjct: 116 EARDLFDRMPHRNVVSWNAMVSGYLRNGMVDRARELFDAMPARDDVSWLMMVSGYMRRKR 175

Query: 108 L-----LVDNYTYPFVLKACGVLMG-------LVEGTEIHGEVVKMGFLCDVFVVNGLIG 155
                 + D    P     C  L+        L +  E+ G + +     D    N +I 
Sbjct: 176 FREAREIFDRAPSPPPTSVCNALLSGYAGYGYLKDAEELFGRMQR----PDRVSWNAMIT 231

Query: 156 MYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIM 215
            Y++ G M  AR +F+    KD VSW  ++RG+++ G++  A EVF +MP +D ++W+ M
Sbjct: 232 GYTRAGMMQVARRLFDEMPGKDTVSWTAIVRGYLQNGDVDAAWEVFQDMPDRDVLAWNTM 291

Query: 216 IDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
           + G+      +  A  LF  MP +DL+SWN+++ GY + GD+ +A   F  M E++  SW
Sbjct: 292 MGGFVVSD-RLDDALRLFADMPDRDLVSWNTILQGYIQQGDMDSATTWFRSMLEKDETSW 350

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
           + +I GY   G    AL L  EM   G RPD  +    IS CA + AL  G+ +H+   +
Sbjct: 351 NTVISGYKDEG----ALSLLSEMTRGGYRPDQATWSVVISVCASLAALGCGRMVHICTIK 406

Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
           +    D +V ++LI MY KCG + EA ++F  + +++ +++N MIA    +G   EAL  
Sbjct: 407 TGFEHDALVMSSLISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYHGLAAEALAL 466

Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           F +M  +    D   FL VL AC+H G   EG   F+SM++   + P+ +HYSC+VDLL 
Sbjct: 467 FDRMTKDRFSPDHATFLSVLSACAHKGYLYEGCHYFRSMQQDWNLVPRSDHYSCMVDLLG 526

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515
           R+G + QA N    +P    +  W TL  +C  H ++ L E+V + +++ +  D G+Y L
Sbjct: 527 RSGFVHQAYNFTRKIPSNLQINAWETLFSSCNAHGDIQLGELVAKNVLQSRPSDGGMYTL 586

Query: 516 LSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           LSNIYA  GMW  A  +R +M+++ +KKETG S IE+ G++  F S +
Sbjct: 587 LSNIYAAKGMWSSAATVRGLMKEQGLKKETGCSWIELKGDVVSFSSND 634



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 178/357 (49%), Gaps = 20/357 (5%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           DV   N  I  + + G +G AR VF+    +++ +WN ++ G    G +  AR VFD MP
Sbjct: 35  DVGRWNSDIMAHFRAGRVGAARRVFDEMRERNVFTWNCMVSGLARNGLLADARGVFDAMP 94

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
            ++++SW+ ++ GY  ++G ++ AR LF+ MP ++++SWN+M+ GY + G +  A++LF+
Sbjct: 95  SRNSVSWAALLTGY-ARRGRVAEARDLFDRMPHRNVVSWNAMVSGYLRNGMVDRARELFD 153

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA-ISACAQVGALD 324
            MP R+  SW +M+ GY +    +EA    RE+  +   P   SV  A +S  A  G L 
Sbjct: 154 AMPARDDVSWLMMVSGYMRRKRFREA----REIFDRAPSPPPTSVCNALLSGYAGYGYLK 209

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
             + +   M+R     D +   A+I  Y + G +  ARR+F  M  K+ +S+  ++ G  
Sbjct: 210 DAEELFGRMQRP----DRVSWNAMITGYTRAGMMQVARRLFDEMPGKDTVSWTAIVRGYL 265

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444
            NG  + A + F  M    +   + +  G ++    S    +  R+F  M      +  L
Sbjct: 266 QNGDVDAAWEVFQDMPDRDVLAWNTMMGGFVV----SDRLDDALRLFADMP-----DRDL 316

Query: 445 EHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEG 501
             ++ ++    + G+++ A     SM  K   + W T++   ++   ++L   +  G
Sbjct: 317 VSWNTILQGYIQQGDMDSATTWFRSMLEKDETS-WNTVISGYKDEGALSLLSEMTRG 372



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 109/439 (24%), Positives = 189/439 (43%), Gaps = 91/439 (20%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A R+F+++ + N +  N M+ G                + R GLL D         A GV
Sbjct: 55  ARRVFDEMRERNVFTWNCMVSG----------------LARNGLLAD---------ARGV 89

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
              +     +    +  G              Y++ G +  AR +F+    +++VSWN +
Sbjct: 90  FDAMPSRNSVSWAALLTG--------------YARRGRVAEARDLFDRMPHRNVVSWNAM 135

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK--------------------- 223
           + G++  G + +ARE+FD MP +D +SW +M+ GY ++K                     
Sbjct: 136 VSGYLRNGMVDRARELFDAMPARDDVSWLMMVSGYMRRKRFREAREIFDRAPSPPPTSVC 195

Query: 224 ----------GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
                     G +  A  LF  M   D +SWN+MI GY + G +  A++LF+EMP ++  
Sbjct: 196 NALLSGYAGYGYLKDAEELFGRMQRPDRVSWNAMITGYTRAGMMQVARRLFDEMPGKDTV 255

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
           SW+ ++ GY Q+G+   A  +F++M  +    DV++    +        LD    +   M
Sbjct: 256 SWTAIVRGYLQNGDVDAAWEVFQDMPDR----DVLAWNTMMGGFVVSDRLDDALRLFADM 311

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
                  D++    ++  Y++ G +D A   F SM +K+  S+N +I+G    G    AL
Sbjct: 312 P----DRDLVSWNTILQGYIQQGDMDSATTWFRSMLEKDETSWNTVISGYKDEG----AL 363

Query: 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH----YSC 449
              ++M   G   D   +  V+  C  + LA  G      M   C I+   EH     S 
Sbjct: 364 SLLSEMTRGGYRPDQATWSVVISVC--ASLAALG---CGRMVHICTIKTGFEHDALVMSS 418

Query: 450 LVDLLSRAGELEQALNIVE 468
           L+ + S+ G + +A  + +
Sbjct: 419 LISMYSKCGLITEASQVFD 437



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 132/302 (43%), Gaps = 54/302 (17%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +  AE LF ++ +P+    N MI GYT++   Q A   +  M  K    D  ++  +++ 
Sbjct: 208 LKDAEELFGRMQRPDRVSWNAMITGYTRAGMMQVARRLFDEMPGK----DTVSWTAIVR- 262

Query: 122 CGVLMGLVEGTEIHG--EVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
                G ++  ++    EV +     DV   N ++G +     +  A  +F     +DLV
Sbjct: 263 -----GYLQNGDVDAAWEVFQDMPDRDVLAWNTMMGGFVVSDRLDDALRLFADMPDRDLV 317

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKG--------------- 224
           SWN +L+G+++ G+M  A   F  M +KD  SW+ +I GY+ +                 
Sbjct: 318 SWNTILQGYIQQGDMDSATTWFRSMLEKDETSWNTVISGYKDEGALSLLSEMTRGGYRPD 377

Query: 225 -----------------------DISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQ 261
                                   I + +  FEH    D +  +S+I  Y+K G +  A 
Sbjct: 378 QATWSVVISVCASLAALGCGRMVHICTIKTGFEH----DALVMSSLISMYSKCGLITEAS 433

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
           Q+F+ + +R+  +W+ MI  YA HG   EAL LF  M      PD  + +  +SACA  G
Sbjct: 434 QVFDLIVQRDTVTWNAMIATYAYHGLAAEALALFDRMTKDRFSPDHATFLSVLSACAHKG 493

Query: 322 AL 323
            L
Sbjct: 494 YL 495



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 88/199 (44%), Gaps = 11/199 (5%)

Query: 13  NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
           N ++    +S      L++ A +   DL++    L   +         +MD A   F  +
Sbjct: 289 NTMMGGFVVSDRLDDALRLFADMPDRDLVSWNTILQGYI------QQGDMDSATTWFRSM 342

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
            + +    NT+I GY      + ALS    M R G   D  T+  V+  C  L  L  G 
Sbjct: 343 LEKDETSWNTVISGYKD----EGALSLLSEMTRGGYRPDQATWSVVISVCASLAALGCGR 398

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
            +H   +K GF  D  V++ LI MYSKCG +  A  VF+    +D V+WN ++  +   G
Sbjct: 399 MVHICTIKTGFEHDALVMSSLISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYHG 458

Query: 193 EMGKAREVFDEMPQKDAIS 211
              +A  +FD M  KD  S
Sbjct: 459 LAAEALALFDRM-TKDRFS 476


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 166/517 (32%), Positives = 288/517 (55%), Gaps = 20/517 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ + ++FN + + N    N MI G+T +     A   ++ M  +G+  D  T+  V KA
Sbjct: 222 IEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKA 281

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI--KDLV 179
            G+L  + +  E+ G  +++G   +  V   LI M SKCG +  ARS+F    I  +   
Sbjct: 282 IGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNA 341

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK-------------KKGDI 226
            WN ++ G++  G   KA E+F +M Q D     I +D Y                 G  
Sbjct: 342 PWNAMISGYLRSGFNEKALELFAKMCQND-----IYLDHYTYCSVFNAIAALKCLSLGKK 396

Query: 227 SSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
             AR +   + +  +   N++ + YAK G L   +++FN M +R++ SW+ ++  Y+Q  
Sbjct: 397 VHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCS 456

Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
              +A+ +F  M  +G+ P+  +    + +CA +  L+ G+ +H  + +  + MD  +++
Sbjct: 457 EWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIES 516

Query: 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK 406
           AL+DMY KCG L +A+++F  ++  + +S+  +IAG   +G  ++AL+ F +M   G+  
Sbjct: 517 ALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEP 576

Query: 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466
           + + FL VL ACSH GL  EG + F+ MK+  G+ P++EHY+C+VDLLSR G L  A+  
Sbjct: 577 NAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEF 636

Query: 467 VESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMW 526
           +  MP++PN  +W TLL ACR H NV L E+  + ++  KA++   YVLLSN Y ++G +
Sbjct: 637 ISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSY 696

Query: 527 EHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           +  L +R +M+++ +KKE G S I ++G + +F +G+
Sbjct: 697 KDGLSLRHLMKEQGVKKEPGCSWISVNGTLHKFYAGD 733



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 122/490 (24%), Positives = 228/490 (46%), Gaps = 15/490 (3%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D A RLF+Q+ Q NT+    +I G  ++        F+  M+ +G+  D + Y  +L+
Sbjct: 120 DIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQ 179

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C  L  +  G  +H ++V  GF    FV   L+ MY+K   +  +  VF      ++VS
Sbjct: 180 ICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVS 239

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKG---DISSAR----ILF 233
           WN ++ GF        A ++F  M  +     +    G  K  G   D++ A+       
Sbjct: 240 WNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYAL 299

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNE--MPERNVFSWSIMIDGYAQHGNPKEA 291
           E     + +   ++ID  +K G L  A+ +FN   +  R    W+ MI GY + G  ++A
Sbjct: 300 ELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKA 359

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI-VQTALID 350
           L LF +M    +  D  +     +A A +  L LGK +H    +S + ++ + +  A+ +
Sbjct: 360 LELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVAN 419

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
            Y KCGSL++ R++F  M  +++IS+  ++         ++A++ F+ M  EGI  +   
Sbjct: 420 AYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFT 479

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
           F  VL++C++  L   G ++   + +  G++      S LVD+ ++ G L  A  +   +
Sbjct: 480 FSSVLVSCANLCLLEYGQQVHGIICK-VGLDMDKCIESALVDMYAKCGCLGDAKKVFNRI 538

Query: 471 PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA--DAGMWEH 528
                ++ W  ++     H  V  A  +   +V+L  +   +   L  ++A    G+ E 
Sbjct: 539 SNADTVS-WTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAV-TFLCVLFACSHGGLVEE 596

Query: 529 ALRIRKMMRK 538
            L+  K+M+K
Sbjct: 597 GLQYFKLMKK 606



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 189/417 (45%), Gaps = 47/417 (11%)

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLC--DVFVVNGLIGMYSKCGHMGCARSVFEGSEI 175
           +L+ C     L +   +HG ++K  F     + ++N +   YSKC  +  A  +F+    
Sbjct: 74  LLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQ 133

Query: 176 KDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWS----IMIDGYRKKKGDIS 227
           ++  SW +++ G  E G      E F EM  +    D  ++S    I I     + G++ 
Sbjct: 134 RNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMV 193

Query: 228 SARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN 287
            A+I+         +S  ++++ YAK+ ++  + ++FN M E NV SW+ MI G+  +  
Sbjct: 194 HAQIVIRGFTSHTFVS-TALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDL 252

Query: 288 PKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA 347
             +A  LF  M+ +GV PD  + +G   A   +  ++  K +  +     +  + +V TA
Sbjct: 253 YLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTA 312

Query: 348 LIDMYMKCGSLDEARRIFYS--MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
           LIDM  KCGSL EAR IF S  +T +    +N MI+G   +GF E+AL+ FA+M    I 
Sbjct: 313 LIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIY 372

Query: 406 KDDLIFLGVLIACS----------------HSGLATEGYRIFQSMKR---HCGI------ 440
            D   +  V  A +                 SGL      I  ++      CG       
Sbjct: 373 LDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRK 432

Query: 441 ------EPKLEHYSCLVDLLSRAGELEQALNIVESMP---MKPNLALWGTLLLACRN 488
                 +  L  ++ LV   S+  E ++A+ I  +M    + PN   + ++L++C N
Sbjct: 433 VFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCAN 489



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 116/237 (48%), Gaps = 11/237 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++   ++FN++   +     +++  Y+Q S   KA+  + NM+ +G+  + +T+  VL 
Sbjct: 426 SLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLV 485

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           +C  L  L  G ++HG + K+G   D  + + L+ MY+KCG +G A+ VF      D VS
Sbjct: 486 SCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVS 545

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQ----KDAISWSIMIDGYRKKKGDISSARILFEHM 236
           W  ++ G  + G +  A ++F  M Q     +A+++  ++       G +      F+ M
Sbjct: 546 WTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFAC-SHGGLVEEGLQYFKLM 604

Query: 237 P-----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
                 + ++  +  ++D  +++G L  A +  + MP E N   W  ++     HGN
Sbjct: 605 KKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGN 661


>gi|46805412|dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215704291|dbj|BAG93131.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 527

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 146/341 (42%), Positives = 221/341 (64%)

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           LF+ MP++  +++N++I G  + G + AA ++F+ MP  +  SW+ +IDG  ++G   EA
Sbjct: 161 LFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEA 220

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           +  FR ML  GV PD ++++  ISACA+VGAL LG W+H  + R  +  ++ +  +LIDM
Sbjct: 221 IDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDM 280

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y +CG ++ AR++F  M K+ V+S+N MI G   NG   +A++ F  M  EG   D + F
Sbjct: 281 YARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTF 340

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
            GVL ACSH GL  EG R +  M+   GI  ++EHY C+VDLL R+G+LE+A+ +V +MP
Sbjct: 341 TGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRVVTTMP 400

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           M+PN  + G LL  CR H +V +AE +++ L+EL       YVLLSNIYA  G W+ A +
Sbjct: 401 MRPNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKWDGAGK 460

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           +R +M+ R ++K  G S +EIDG++ EFVSG+    Q+EE+
Sbjct: 461 VRSLMKARGLRKRPGYSAVEIDGDVHEFVSGDRSHPQAEEI 501



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 138/297 (46%), Gaps = 47/297 (15%)

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMY--SKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
           +H  V+K+ F   + +   L+  Y  S+  H+  A  +F+   ++  V++N V+ G +  
Sbjct: 127 VHARVLKL-FPSHLLLSTCLVRFYFASRLPHL--ALQLFDAMPVRSAVTYNTVISGLMRN 183

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI----KDLIS---- 243
           G +  A EVFD MP  D +SW+ +IDG   K G    A   F  M +     D ++    
Sbjct: 184 GLVAAAFEVFDGMPAPDKVSWTALIDGC-VKNGRHDEAIDCFRAMLLDGVEPDYVTLIAV 242

Query: 244 --------------W-----------------NSMIDGYAKIGDLVAAQQLFNEMPERNV 272
                         W                 NS+ID YA+ G +  A+Q+F+ M +R V
Sbjct: 243 ISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMRKRTV 302

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHV 331
            SW+ MI G+A +G   +A+  F  M  +G +PD ++  G ++AC+  G  D G ++  +
Sbjct: 303 VSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDL 362

Query: 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG 387
                 I   M     ++D+  + G L+EA R+  +M  + N +    ++AG  M+G
Sbjct: 363 MRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRVVTTMPMRPNEVVLGALLAGCRMHG 419



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 110/243 (45%), Gaps = 13/243 (5%)

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
           +F+ +  P+      +I G  ++    +A+  +  M   G+  D  T   V+ AC  +  
Sbjct: 192 VFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGA 251

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
           L  G  +H  VV+ G   +V + N LI MY++CG +  AR VF G   + +VSWN ++ G
Sbjct: 252 LGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVG 311

Query: 188 FVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILF------EHMP 237
           F   G    A E F+ M ++    DA++++ ++       G ++   + +      E+  
Sbjct: 312 FAANGRCADAVEHFEAMRREGFKPDAVTFTGVLTAC--SHGGLTDEGLRYYDLMRAEYGI 369

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQHGNPKEALYLFR 296
              +  +  ++D   + G L  A ++   MP R N      ++ G   HG+   A  L +
Sbjct: 370 AARMEHYGCVVDLLGRSGQLEEAMRVVTTMPMRPNEVVLGALLAGCRMHGDVGMAEQLMQ 429

Query: 297 EML 299
            +L
Sbjct: 430 HLL 432



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 109/250 (43%), Gaps = 38/250 (15%)

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR--PDVISVMGAISACAQVGALDLGKW 328
           +V SW+  I   A+ G+   A      ML       P+ ++++  +SACA   +  L + 
Sbjct: 63  DVASWTSAIARPAKQGDLPAAAAALSAMLSSPAAPVPNDVTLLTVLSACADSPSSPLARR 122

Query: 329 IHVFMKRSRITM---DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL-- 383
           + + +    + +    +++ T L+  Y        A ++F +M  ++ ++YN +I+GL  
Sbjct: 123 LALSVHARVLKLFPSHLLLSTCLVRFYFASRLPHLALQLFDAMPVRSAVTYNTVISGLMR 182

Query: 384 ------------GM-----------------NGFGEEALKCFAQMETEGIPKDDLIFLGV 414
                       GM                 NG  +EA+ CF  M  +G+  D +  + V
Sbjct: 183 NGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVTLIAV 242

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           + AC+  G    G  + + + R  G+E  +   + L+D+ +R G++E A  +   M  K 
Sbjct: 243 ISACAEVGALGLGMWVHRLVVRQ-GLERNVRIANSLIDMYARCGQVELARQVFSGM-RKR 300

Query: 475 NLALWGTLLL 484
            +  W ++++
Sbjct: 301 TVVSWNSMIV 310


>gi|357438957|ref|XP_003589755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478803|gb|AES60006.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 891

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 172/518 (33%), Positives = 289/518 (55%), Gaps = 43/518 (8%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +++AERLFN++   N    NTMI GY ++   Q+AL  +  M  +               
Sbjct: 124 IEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRMPER--------------- 168

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
                                   +V   N ++   + CG +  A  +F     +D+VSW
Sbjct: 169 ------------------------NVVSWNTVMTALAHCGRIDDAERLFNEMRERDVVSW 204

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
             ++ G  + G +  AREVFD+MP ++ +SW+ MI GY  + G    A  LFE MP +D+
Sbjct: 205 TTMVAGLSKNGRVDAAREVFDKMPIRNVVSWNAMIAGY-AQNGRFDEALKLFERMPERDM 263

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
            SWN+M+ G+ + GDL  A+QLF+ MP++NV +W+ M+ GY QHG  +EAL LF +M   
Sbjct: 264 PSWNTMVTGFIQNGDLNRAEQLFHAMPQKNVITWTAMMTGYVQHGLSEEALKLFNKMQAN 323

Query: 302 -GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
            G++P   + +  + AC+ +  L  G+ IH  + ++       V +ALI+MY KCG    
Sbjct: 324 DGLKPTTGTFVTVLGACSDLAGLPEGQQIHQMISKTVFQESTYVVSALINMYSKCGDFHV 383

Query: 361 ARRIFYS--MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
           A+++F        ++I++N MIA    +G+G EA+  F +M+  G   +D+ ++G+L AC
Sbjct: 384 AKKMFDDGLSGHMDLIAWNGMIAAYAHHGYGNEAINLFNKMQELGFQANDVTYVGLLTAC 443

Query: 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
           SH+GL  EG++ F  + ++  I+ + +HY+CL+DL  RAG L++ALNI+E +  + +L+L
Sbjct: 444 SHAGLFDEGFKYFDELLKNRYIQVREDHYTCLIDLCGRAGRLDEALNIIEGLGKEVSLSL 503

Query: 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
           WG LL  C  H N  + ++V + +++++ ++   Y+L SN+YA  GM E A  +R  M+K
Sbjct: 504 WGALLAGCSVHGNADIGKLVADKVLKMEPENADTYLLASNMYASVGMREEAANVRMKMKK 563

Query: 539 RKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
           + +KK+ G S I++   ++ FV  +    Q E L+ ++
Sbjct: 564 KGLKKQPGCSWIDVGNTVQVFVVNDKSHSQFEMLKYLL 601



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 120/425 (28%), Positives = 204/425 (48%), Gaps = 40/425 (9%)

Query: 151 NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM-PQKDA 209
           N  I    + G +  AR VF+    +D   W  ++ G+++CG + +AR++FD    QK  
Sbjct: 49  NYFISKLCREGKVNEARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLFDRPDAQKSV 108

Query: 210 ISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269
           I W+ M+ GY  K   I  A  LF  MP+++++SWN+MIDGYA+ G    A  LF  MPE
Sbjct: 109 IVWTAMVSGY-IKMNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRMPE 167

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK-- 327
           RNV SW+ ++   A  G   +A  LF EM       DV+S    ++  ++ G +D  +  
Sbjct: 168 RNVVSWNTVMTALAHCGRIDDAERLFNEMR----ERDVVSWTTMVAGLSKNGRVDAAREV 223

Query: 328 -----------W---IHVFMKRSRIT-----------MDMIVQTALIDMYMKCGSLDEAR 362
                      W   I  + +  R              DM     ++  +++ G L+ A 
Sbjct: 224 FDKMPIRNVVSWNAMIAGYAQNGRFDEALKLFERMPERDMPSWNTMVTGFIQNGDLNRAE 283

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME-TEGIPKDDLIFLGVLIACSHS 421
           ++F++M +KNVI++  M+ G   +G  EEALK F +M+  +G+      F+ VL ACS  
Sbjct: 284 QLFHAMPQKNVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDL 343

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES-MPMKPNLALWG 480
               EG +I Q + +    E      S L+++ S+ G+   A  + +  +    +L  W 
Sbjct: 344 AGLPEGQQIHQMISKTVFQESTYV-VSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWN 402

Query: 481 TLLLACRNHQNVTLAEVVVEGLVEL--KADDCGLYVLLSNIYADAGMWEHALR-IRKMMR 537
            ++ A  +H     A  +   + EL  +A+D   YV L    + AG+++   +   ++++
Sbjct: 403 GMIAAYAHHGYGNEAINLFNKMQELGFQANDV-TYVGLLTACSHAGLFDEGFKYFDELLK 461

Query: 538 KRKIK 542
            R I+
Sbjct: 462 NRYIQ 466



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 80/149 (53%), Gaps = 3/149 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMK-RKGLLVDNYTYPFVL 119
           ++++AE+LF+ + Q N      M+ GY Q    ++AL  +  M+   GL     T+  VL
Sbjct: 278 DLNRAEQLFHAMPQKNVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVL 337

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG--SEIKD 177
            AC  L GL EG +IH  + K  F    +VV+ LI MYSKCG    A+ +F+   S   D
Sbjct: 338 GACSDLAGLPEGQQIHQMISKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMD 397

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
           L++WN ++  +   G   +A  +F++M +
Sbjct: 398 LIAWNGMIAAYAHHGYGNEAINLFNKMQE 426



 Score = 45.8 bits (107), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 69/148 (46%), Gaps = 9/148 (6%)

Query: 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFA 397
           +T +M      I    + G ++EAR++F  M+K++   +  MI+G    G   EA K F 
Sbjct: 41  LTSEMKRCNYFISKLCREGKVNEARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLFD 100

Query: 398 QMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA 457
           + + +   K  +++  ++          E  R+F  M         +  ++ ++D  +R 
Sbjct: 101 RPDAQ---KSVIVWTAMVSGYIKMNRIEEAERLFNEMPVR-----NVVSWNTMIDGYARN 152

Query: 458 GELEQALNIVESMPMKPNLALWGTLLLA 485
           G  ++AL++   MP + N+  W T++ A
Sbjct: 153 GRTQEALDLFGRMPER-NVVSWNTVMTA 179



 Score = 38.9 bits (89), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 3/93 (3%)

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM---IDGYAQHGNPKEA 291
           H  I DL++++ ++     +GDL  A +++NEM  R     S++   I  + + G   EA
Sbjct: 664 HSLIGDLVAYSLIVYVKVSLGDLDFALKMYNEMVRRGFSESSLVYTFIRAFCEKGRVDEA 723

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
           + L  EM  +G+R    +    I  CA  G L+
Sbjct: 724 IGLMTEMEGKGLRAYDETYECVIVGCADSGRLN 756


>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Vitis vinifera]
          Length = 545

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 181/505 (35%), Positives = 284/505 (56%), Gaps = 54/505 (10%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMI-------RGYTQSSNPQKALSFYVNMKRKGLLVDNYT 114
           +  A +LF++I  PNT +   ++       RG+ +     +ALS +  M+++GL  + + 
Sbjct: 78  LSNARKLFDKI--PNTNIRRWIVLTGACARRGFYE-----EALSAFSEMQKEGLRPNQFV 130

Query: 115 YPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174
            P +LKACG L     G  +H  ++K  F  D ++++ LI MYSKCGH+           
Sbjct: 131 LPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVE---------- 180

Query: 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFE 234
                                KA  VFD +  KD +  + M+ GY  + G +  A  L +
Sbjct: 181 ---------------------KACRVFDWIVDKDLVVMNAMVSGY-AQHGFVHEALNLVQ 218

Query: 235 HMP----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMP----ERNVFSWSIMIDGYAQHG 286
            M       +++SWN++I G++++GD     ++F  M     E +V SW+ +I G+ Q+ 
Sbjct: 219 KMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNF 278

Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
           +  E    F+EML QG  P  +++   + AC  V  L  GK IH +     +  D+ V++
Sbjct: 279 HNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRS 338

Query: 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK 406
           AL+DMY KCG + EA+ +FY M ++N +++N +I G   +G+  EA++ F QME      
Sbjct: 339 ALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKL 398

Query: 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466
           D L F  VL ACSH+G+   G  +F+ M+    IEP+LEHY+C+VDLL RAG+L +A ++
Sbjct: 399 DHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDL 458

Query: 467 VESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMW 526
           +++MP++P+  +WG LL ACRNH N+ LAEV  E L EL+ +  G  +LLSN+YADAG W
Sbjct: 459 IKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSSLLLSNLYADAGRW 518

Query: 527 EHALRIRKMMRKRKIKKETGRSVIE 551
            +A +++KMM++RK  K  G S IE
Sbjct: 519 GNAAKMKKMMKQRKFGKFPGCSWIE 543



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 163/345 (47%), Gaps = 14/345 (4%)

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWN----SMIDGYAKIGDLVAAQ 261
           Q  + +++  ID Y + +  +   R L  H+ I  L         ++  Y + G L  A+
Sbjct: 24  QSSSDTYAKAIDMYARDRA-LYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNAR 82

Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
           +LF+++P  N+  W ++    A+ G  +EAL  F EM  +G+RP+   +   + AC  + 
Sbjct: 83  KLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLS 142

Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
               G+ +H  + ++    D  + +ALI MY KCG +++A R+F  +  K+++  N M++
Sbjct: 143 DRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVS 202

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA-CSHSGLATEGYRIFQSMKRHCGI 440
           G   +GF  EAL    +M+  G+ K +++    LIA  S  G  +    +F+ M  + G+
Sbjct: 203 GYAQHGFVHEALNLVQKMQQAGV-KPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTAN-GV 260

Query: 441 EPKLEHYSCLVDLLSRAGELEQALNIVESM---PMKPNLALWGTLLLACRNHQNVTLAEV 497
           EP +  ++ ++    +     +  +  + M      P+     +LL AC N  N+   + 
Sbjct: 261 EPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGK- 319

Query: 498 VVEGLVELKADDCGLYV--LLSNIYADAGMWEHALRIRKMMRKRK 540
            + G   +   +  +YV   L ++YA  G    A  +  MM +R 
Sbjct: 320 EIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERN 364



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 165/398 (41%), Gaps = 79/398 (19%)

Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMI---------------------DGYR------ 220
           + ECG++  AR++FD++P  +   W ++                      +G R      
Sbjct: 72  YTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVL 131

Query: 221 ----KKKGDISSAR-------ILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269
               K  G +S  R       ++ ++    D    +++I  Y+K G +  A ++F+ + +
Sbjct: 132 PSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVD 191

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329
           +++   + M+ GYAQHG   EAL L ++M   GV+P+V+S    I+  +QVG        
Sbjct: 192 KDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVG-------- 243

Query: 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFG 389
                +S ++    + TA                   +  + +V+S+  +I+G   N   
Sbjct: 244 ----DKSMVSEVFRLMTA-------------------NGVEPDVVSWTSVISGFVQNFHN 280

Query: 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449
            E    F +M  +G     +    +L AC++      G  I        G+E  +   S 
Sbjct: 281 HEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEI-HGYAMVIGVEKDVYVRSA 339

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509
           LVD+ ++ G + +A  +   MP + N   W +L+    NH     A   +E   +++  D
Sbjct: 340 LVDMYAKCGYISEAKILFYMMPER-NTVTWNSLIFGYANHGYCNEA---IELFNQMEESD 395

Query: 510 CGL----YVLLSNIYADAGMWEHALRI-RKMMRKRKIK 542
             L    +  + N  + AGM E    + RKM  K +I+
Sbjct: 396 TKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIE 433


>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14820-like, partial [Brachypodium
           distachyon]
          Length = 498

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 176/469 (37%), Positives = 263/469 (56%), Gaps = 40/469 (8%)

Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
           V GT  HG  V++G   D FV   L+G Y+ C  +  AR VF+G   +DLV+W ++L  +
Sbjct: 12  VRGT--HGIAVRVGADEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSY 69

Query: 189 VEC----------GEMGKAREVFDEMPQKDAISWSIMIDGYRKKK--------------G 224
                         +M ++R V D++     +S        R  K               
Sbjct: 70  FNTQNYRETLLLLNKMKRSRVVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDA 129

Query: 225 DISSARI--------------LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER 270
            +SSA I              ++  M  KDL+S  +M+ GYAK G +  A+ +FN M E+
Sbjct: 130 RLSSALINMYASCMDMEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEK 189

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           +V SWS MI  YA++  P E L LF +M   GV PD I+++  ISACA +G+LD  +WIH
Sbjct: 190 DVVSWSAMISAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWIH 249

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
             +        + +  ALIDM+ KCGSL  A  +F +M +KNVI++  MIA   M+G G 
Sbjct: 250 SIVGNHGFYKILSICNALIDMFSKCGSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGP 309

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
            AL  F QM+ EG+  + + FL +L AC H+GL  EG  +F+ M +   IEPK EHY C+
Sbjct: 310 SALTLFGQMKGEGVEPNGVTFLVLLYACCHAGLVYEGRSLFECMLQEYRIEPKHEHYGCM 369

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           VDL+ RA  +++A++++ESM ++PN+A+WG+LL AC  H ++ L E   + ++EL  +  
Sbjct: 370 VDLMGRAKLMQEAVDLIESMHIRPNVAIWGSLLAACWMHGDIELGEFAAKKILELDPNHD 429

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEF 559
           G YVLLSNI+A +G W +A ++R MM+   + KETG S +E++  +  F
Sbjct: 430 GAYVLLSNIHAKSGNWNNAQKLRVMMKVHGVSKETGYSWLELNCTVHGF 478



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 166/374 (44%), Gaps = 43/374 (11%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           +A R+F+ + + +      M+  Y  + N ++ L     MKR  ++ D      VL  CG
Sbjct: 46  EARRVFDGMPERDLVAWGVMLDSYFNTQNYRETLLLLNKMKRSRVVPDQVILATVLSTCG 105

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
               L  G  IH  +       D  + + LI MY+ C  M  A  ++ G + KDLVS   
Sbjct: 106 HTRHLRSGKTIHSYIQVSDIFVDARLSSALINMYASCMDMEMADKIYSGMQRKDLVSSTA 165

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK-------------------- 223
           ++ G+ + G++  AR +F+ M +KD +SWS MI  Y +                      
Sbjct: 166 MVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPSEVLNLFNKMQGCGVSPD 225

Query: 224 --------------GDISSAR----ILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
                         G +  AR    I+  H   K L   N++ID ++K G L  A  +FN
Sbjct: 226 EITMLSVISACANIGSLDKARWIHSIVGNHGFYKILSICNALIDMFSKCGSLTLALNMFN 285

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
            MP +NV +W+ MI  +A HG+   AL LF +M  +GV P+ ++ +  + AC   G +  
Sbjct: 286 AMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVTFLVLLYACCHAGLVYE 345

Query: 326 GKWI-HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM-TKKNVISYNVMIAGL 383
           G+ +    ++  RI         ++D+  +   + EA  +  SM  + NV  +  ++A  
Sbjct: 346 GRSLFECMLQEYRIEPKHEHYGCMVDLMGRAKLMQEAVDLIESMHIRPNVAIWGSLLAAC 405

Query: 384 GMNG---FGEEALK 394
            M+G    GE A K
Sbjct: 406 WMHGDIELGEFAAK 419



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 3/159 (1%)

Query: 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS 375
           A A+    D  +  H    R     D  V TAL+  Y  C  + EARR+F  M ++++++
Sbjct: 2   AAARARWTDTVRGTHGIAVRVGADEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLVA 61

Query: 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMK 435
           + VM+          E L    +M+   +  D +I   VL  C H+     G  I   ++
Sbjct: 62  WGVMLDSYFNTQNYRETLLLLNKMKRSRVVPDQVILATVLSTCGHTRHLRSGKTIHSYIQ 121

Query: 436 -RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
                ++ +L   S L+++ +   ++E A  I   M  K
Sbjct: 122 VSDIFVDARLS--SALINMYASCMDMEMADKIYSGMQRK 158


>gi|68611229|emb|CAE03043.3| OSJNBa0084A10.18 [Oryza sativa Japonica Group]
          Length = 729

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 173/523 (33%), Positives = 276/523 (52%), Gaps = 28/523 (5%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM----------------KRKG 107
           +A  LFN+I   N    N M+ GY ++   ++A   +  M                KRK 
Sbjct: 114 EARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKH 173

Query: 108 L-----LVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVV--NGLIGMYSKC 160
           +     L D+   P       +L G VE   +    V  G +     V  N +I  Y++ 
Sbjct: 174 VREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARA 233

Query: 161 GHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR 220
           G MG A+ +F+    KD++S   ++RG+++ G +  A +VF +MP +D ++W+ M+DG+ 
Sbjct: 234 GSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFV 293

Query: 221 KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMID 280
           +    +  A  LF  MP +D ISWN+++ GY + GD+ +A   F   P ++  SW+ +I 
Sbjct: 294 RND-RLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLIS 352

Query: 281 GYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM 340
           GY   G    AL L  EM+  G++PD  ++   IS CA + +L  GK +H++  ++    
Sbjct: 353 GYKDEG----ALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEH 408

Query: 341 DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME 400
           D +V ++LI MY KCG + EA ++F  + +++ +++N MIA    +G  +EALK F  M 
Sbjct: 409 DALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMT 468

Query: 401 TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460
             G   D   FL +L AC+H G   EG   F+SM+    + P+ +HYSC+VDLL R+G +
Sbjct: 469 KAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFI 528

Query: 461 EQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520
            QA +    +P       W TL   C +H  + L E++   +++ +  D G+Y LLSNIY
Sbjct: 529 HQAYDFTRRIPSDHRTTAWETLFSVCNSHGEIQLGEIIARNVLKARPSDGGMYTLLSNIY 588

Query: 521 ADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           A   MW  A  +R  M++R +KKETG S IE+ G +  F S +
Sbjct: 589 AAKEMWSSAASVRGFMKERGLKKETGCSWIELKGEVVTFSSND 631



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 152/302 (50%), Gaps = 18/302 (5%)

Query: 152 GLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAIS 211
            L+  Y++CG +  AR +F     +++VSWN ++ G+   G + +ARE+FD MP +D +S
Sbjct: 101 ALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVS 160

Query: 212 WSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271
           W  MI GY K+K  +  AR LF+ MP       N+++ GY ++G + AA+ LF +M  RN
Sbjct: 161 WLTMISGYIKRK-HVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRN 219

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV 331
             SW++MI GYA+ G+   A  LF EM       DV+S    +    Q G++D   W  V
Sbjct: 220 PVSWNVMITGYARAGSMGIAQRLFDEM----PEKDVLSRTAIMRGYLQNGSVD-AAW-KV 273

Query: 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391
           F  +     D +    ++D +++   LD+A ++F  M  ++ IS+N ++ G    G  + 
Sbjct: 274 F--KDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDS 331

Query: 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
           A   F +      P  D I    LI    SG   EG     S     G++P     S ++
Sbjct: 332 ANAWFRR-----APNKDAISWNTLI----SGYKDEGALSLLSEMIRGGLKPDQATLSVVI 382

Query: 452 DL 453
            +
Sbjct: 383 SI 384



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 143/254 (56%), Gaps = 9/254 (3%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           +VF  N ++    +   +  AR VF+   +++ VSW  +L G+  CG + +ARE+F+ +P
Sbjct: 64  NVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELFNRIP 123

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
            ++ +SW+ M+ GY  + G +  AR LF+ MP +D +SW +MI GY K   +  A++LF+
Sbjct: 124 DRNVVSWNAMVSGY-ARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFD 182

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
            MP       + ++ GY + G  + A  LF +M  Q   P   +VM  I+  A+ G++ +
Sbjct: 183 SMPSPPTSVCNALLSGYVELGYMRAAEVLFGQM--QTRNPVSWNVM--ITGYARAGSMGI 238

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
            + +   M       D++ +TA++  Y++ GS+D A ++F  M  ++ +++N M+ G   
Sbjct: 239 AQRLFDEMPEK----DVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVR 294

Query: 386 NGFGEEALKCFAQM 399
           N   ++ALK F++M
Sbjct: 295 NDRLDDALKLFSEM 308



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 185/372 (49%), Gaps = 21/372 (5%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           DVF  N  I  + + G +  AR VF+    +++ +WN ++ G +    + +AR+VFD MP
Sbjct: 33  DVFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMP 92

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
            ++++SW+ ++ GY  + G ++ AR LF  +P ++++SWN+M+ GYA+ G +  A++LF+
Sbjct: 93  VRNSVSWAALLTGY-ARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFD 151

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
            MP R+  SW  MI GY +  + +EA  LF  M      P        +S   ++G +  
Sbjct: 152 MMPWRDDVSWLTMISGYIKRKHVREARELFDSMPS----PPTSVCNALLSGYVELGYMRA 207

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
            + +   M+    T + +    +I  Y + GS+  A+R+F  M +K+V+S   ++ G   
Sbjct: 208 AEVLFGQMQ----TRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQ 263

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           NG  + A K F  M      +D + +  ++     +    +  ++F  M     I     
Sbjct: 264 NGSVDAAWKVFKDMPH----RDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQIS---- 315

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
            ++ ++    + G+++ A       P K  ++ W TL+   ++   ++L   ++ G   L
Sbjct: 316 -WNAILQGYVQQGDMDSANAWFRRAPNKDAIS-WNTLISGYKDEGALSLLSEMIRG--GL 371

Query: 506 KADDCGLYVLLS 517
           K D   L V++S
Sbjct: 372 KPDQATLSVVIS 383



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 124/301 (41%), Gaps = 81/301 (26%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +M  A+RLF+++ + +      ++RGY Q+ +   A   + +M                 
Sbjct: 235 SMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMP---------------- 278

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
                         H + V    + D FV N           +  A  +F     +D +S
Sbjct: 279 --------------HRDTVAWNTMMDGFVRN---------DRLDDALKLFSEMPDRDQIS 315

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK--------------KGDI 226
           WN +L+G+V+ G+M  A   F   P KDAISW+ +I GY+ +              K D 
Sbjct: 316 WNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDEGALSLLSEMIRGGLKPDQ 375

Query: 227 SSARIL------------------------FEHMPIKDLISWNSMIDGYAKIGDLVAAQQ 262
           ++  ++                        FEH    D +  +S+I  Y+K G +  A Q
Sbjct: 376 ATLSVVISICASLVSLGCGKMVHLWAIKTGFEH----DALVMSSLISMYSKCGLISEASQ 431

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F  + +R+  +W+ MI  YA HG   EAL +F  M   G RPD  + +  +SACA  G 
Sbjct: 432 VFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGY 491

Query: 323 L 323
           L
Sbjct: 492 L 492


>gi|354805242|gb|AER41656.1| CRR4 [Oryza rufipogon]
          Length = 752

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 172/507 (33%), Positives = 263/507 (51%), Gaps = 77/507 (15%)

Query: 106 KGLLVDNYTYPFVLKACGVLMGLVEGTE-IHGEVVKMGFLCDVFVVNGLIGMYSKC---- 160
           +G+  + +T+ F+L+AC  L+GL      +HG++V+ GF  DVFV N L+ +Y +C    
Sbjct: 105 QGVPPNGFTFTFLLRACA-LLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGG 163

Query: 161 ----------------------------------GHMGCARSVFEGSEIKDLVSWNLVLR 186
                                             G    A   FE    +++VSWN V+ 
Sbjct: 164 GGGGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVA 223

Query: 187 GFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNS 246
           GF   G+M  AR VFD MP ++A+SW++MI GY    GD+ +AR +F+ M  KD++SW +
Sbjct: 224 GFARMGDMVTARAVFDRMPSRNAVSWNLMISGY-ATSGDVEAARSVFDRMDQKDVVSWTA 282

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRP 305
           M+  YAKIGDL  A +LF+ MP +N+ SW+ MI GY  +    EAL  F+ M+ +G  RP
Sbjct: 283 MVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRP 342

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D  +++  +SACAQ+G+++   WI  F+ +S I + + +  ALIDM+ KCG +  A+ IF
Sbjct: 343 DEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAQSIF 402

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
           Y M  + +I++  MI+G   NG   +AL  +  M  EG+  DD +F+  L AC+H GL  
Sbjct: 403 YKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQ 462

Query: 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
           EG+ IF  M     I+P++EHY C+VDLL RA                            
Sbjct: 463 EGWSIFNEMVERYNIQPRMEHYGCMVDLLGRA---------------------------- 494

Query: 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
                   L E V + + EL+  +    VL+SN  A  G W+  +  R  MR   I+K  
Sbjct: 495 -------ELIEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGIEKVP 547

Query: 546 GRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           G S I++   + EF++ +    + +E+
Sbjct: 548 GSSSIQVGSEVHEFLAKDTRHKRRKEI 574


>gi|297843412|ref|XP_002889587.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335429|gb|EFH65846.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 558

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 194/581 (33%), Positives = 305/581 (52%), Gaps = 78/581 (13%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI-- 72
           L+S+L  +KT  H  Q+ A++  +    E    S L  +    N L+   A   F++I  
Sbjct: 10  LLSILSQTKTLHHTQQVHAKVIIHGFQDEVVLGSSLTNAYIQSNRLDFATAS--FDRIPC 67

Query: 73  YQPNTYMHNTMIRGYTQSSNP--QKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
           ++ N +  NT++ GY++S +      L  Y  M+R    VD++   F +KAC V +GL+E
Sbjct: 68  WKRNRHSWNTILSGYSKSKSCYYSDVLLLYNRMRRHCDGVDSFNLVFAIKAC-VGLGLLE 126

Query: 131 -GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
            G  IHG  +K G   D +V   L+ MY+                               
Sbjct: 127 NGMLIHGLAMKNGLDKDDYVAPSLVEMYA------------------------------- 155

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILF---------EHMPIKD 240
           + G M  A++VFDEMP ++++ W +++ GY K   D    R+ +         + + +  
Sbjct: 156 QFGTMESAQKVFDEMPVRNSVLWGVLMKGYLKYSKDSEVFRLFYLMRDTGLALDALTLIC 215

Query: 241 LISW------------------------------NSMIDGYAKIGDLVAAQQLFNEMPER 270
           L+                                 S+ID Y K   L  A++LF    ER
Sbjct: 216 LVKACGNVSAGKEGKCVHGLSIRRSFIDQSGYLEASIIDMYVKCRLLDNARKLFETSVER 275

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           NV  W+ +I G+A+     EA+ LFR+ML + + P+  ++   + +C+ +G+L  GK +H
Sbjct: 276 NVVMWTTLISGFAKCERAVEAIDLFRQMLGESILPNHCTLAAILVSCSSLGSLRHGKSVH 335

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
            +M R+ I MD +  T+ ID Y +CG++  AR++F  M K+NVIS++ MI   G+NG  E
Sbjct: 336 GYMIRNGIEMDAVNFTSFIDTYARCGNIQMARKVFDMMPKRNVISWSSMINAFGINGLFE 395

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
           EAL CF  M+++ +  + + F+ +L ACSHSG   EG++ F+SM R  G+ P+ EHY+C+
Sbjct: 396 EALDCFDNMKSQNLVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGLVPEEEHYACM 455

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           VDLL RAGE+ +A + +++MP+KP  + WG LL ACR H+ V LA  + E L+ ++ D+ 
Sbjct: 456 VDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLSMEPDES 515

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE 551
            +YVLLSNIYADAGMWE    +R  M  +  +K  G S  E
Sbjct: 516 SVYVLLSNIYADAGMWEMVNCVRHKMGIKGYRKPMGLSATE 556


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 181/505 (35%), Positives = 283/505 (56%), Gaps = 54/505 (10%)

Query: 62   MDQAERLFNQIYQPNTYMHNTMI-------RGYTQSSNPQKALSFYVNMKRKGLLVDNYT 114
            +  A +LF++I  PNT +   ++       RG+ +     +ALS +  M+++GL  + + 
Sbjct: 854  LSNARKLFDKI--PNTNIRRWIVLTGACARRGFYE-----EALSAFSEMQKEGLRPNQFV 906

Query: 115  YPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174
             P +LKACG L     G  +H  ++K  F  D ++++ LI MYSKCGH+           
Sbjct: 907  LPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVE---------- 956

Query: 175  IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFE 234
                                 KA  VFD +  KD +  + M+ GY  + G +  A  L +
Sbjct: 957  ---------------------KACRVFDWIVDKDLVVMNAMVSGY-AQHGFVHEALBLVQ 994

Query: 235  HMP----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMP----ERNVFSWSIMIDGYAQHG 286
             M       +++SWN++I G++++GD     ++F  M     E +V SW+ +I G+ Q+ 
Sbjct: 995  KMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNF 1054

Query: 287  NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
            +  E    F+EML QG  P  +++   + AC  V  L  GK IH +     +  D+ V++
Sbjct: 1055 HNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRS 1114

Query: 347  ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK 406
            AL+DMY KCG + EA+ +FY M ++N +++N +I G   +G+  EA++ F QME      
Sbjct: 1115 ALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKL 1174

Query: 407  DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466
            D L F  VL ACSH+G+   G  +F  M+    IEP+LEHY+C+VDLL RAG+L +A ++
Sbjct: 1175 DHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDL 1234

Query: 467  VESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMW 526
            +++MP++P+  +WG LL ACRNH N+ LAEV  E L EL+ +  G  +LLSN+YADAG W
Sbjct: 1235 IKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSSLLLSNLYADAGRW 1294

Query: 527  EHALRIRKMMRKRKIKKETGRSVIE 551
             +A +++KMM++RK  K  G S IE
Sbjct: 1295 GNAAKMKKMMKQRKFGKFPGCSWIE 1319



 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 163/510 (31%), Positives = 280/510 (54%), Gaps = 12/510 (2%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A R+++++   +    N +I  Y ++    +A   ++ +   G   ++YTY  +L  
Sbjct: 164 VDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAV 223

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           CG +  + EG ++H  VVKM +L +  V N L+ +YSKCG M  A  VFE    ++++SW
Sbjct: 224 CGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISW 283

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMP 237
              + GF + G+  KA + F  M +     +  ++SI++      K D    R+    + 
Sbjct: 284 TASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVK-DFIDGRMFHTQVI 342

Query: 238 IKDLISW----NSMIDGYAKIGDLVAAQQLFNEM--PERNVFSWSIMIDGYAQHGNPKEA 291
            K + S      ++ID Y+ +G++  A++ F +M     NV SW+ +I GY  +   ++A
Sbjct: 343 KKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNV-SWNALIAGYVLNEKIEKA 401

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           +  F  M+ + V  +  +      AC+   +L     IH  + +S +  ++ V ++LI+ 
Sbjct: 402 MEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEA 461

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y +CGSL+ A ++F  ++  +V+S+N +I     NG   +A+    +M  EG       F
Sbjct: 462 YTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTF 521

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           L VL ACSHSGL  EG   F+SM +   I+P+  H SC+VD+L RAG+LE AL+ ++ + 
Sbjct: 522 LTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLT 581

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           MKP  ++W  LL ACR + N+ +AE V E +++L+ +D  +YV LSN+YA+ G W  A  
Sbjct: 582 MKPTASIWRPLLAACRYNSNLQMAEYVAEKILDLEPNDATVYVTLSNMYAEVGRWADAEN 641

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
            R++M +++I KE G S IE++  + +F S
Sbjct: 642 QRRLMEQKEISKEPGCSWIEVNNKMYKFFS 671



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 181/378 (47%), Gaps = 14/378 (3%)

Query: 118 VLKACGVLMGLVE-GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK 176
            L  CG   G VE G   H  VVK+G   D FV   LI MY+KCG +  A  V++     
Sbjct: 119 ALSFCG-REGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSL 177

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARIL 232
           D  + N ++  +   G   +A +VF ++     + +  ++S M+         I   + L
Sbjct: 178 DAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTML-AVCGTISAIQEGKQL 236

Query: 233 FEHMPIKDLIS----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNP 288
             H+     +S     N+++  Y+K G +  A+ +F  + +RN+ SW+  I+G+ QHG+ 
Sbjct: 237 HAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDF 296

Query: 289 KEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTAL 348
           K+AL  F  M   G+ P+  +    +++C  V     G+  H  + +  +   + V TA+
Sbjct: 297 KKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAI 356

Query: 349 IDMYMKCGSLDEARRIFYSMTK-KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407
           IDMY   G +DEA + F  M +  + +S+N +IAG  +N   E+A++ F +M  E +  +
Sbjct: 357 IDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACN 416

Query: 408 DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467
           +  +  +  ACS         +I   + +   +E  L   S L++  ++ G LE A+ + 
Sbjct: 417 EFTYSNIFKACSSFPSLATTVQIHSRLIKS-NVESNLHVASSLIEAYTQCGSLENAVQVF 475

Query: 468 ESMPMKPNLALWGTLLLA 485
             +    ++  W +++ A
Sbjct: 476 TQIS-DADVVSWNSIIKA 492



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 163/344 (47%), Gaps = 14/344 (4%)

Query: 206  QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWN----SMIDGYAKIGDLVAAQ 261
            Q  + +++  ID Y + +  +   R L  H+ I  L         ++  Y + G L  A+
Sbjct: 800  QSSSDTYAKAIDMYARDRA-LYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNAR 858

Query: 262  QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
            +LF+++P  N+  W ++    A+ G  +EAL  F EM  +G+RP+   +   + AC  + 
Sbjct: 859  KLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLS 918

Query: 322  ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
                G+ +H  + ++    D  + +ALI MY KCG +++A R+F  +  K+++  N M++
Sbjct: 919  DRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVS 978

Query: 382  GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA-CSHSGLATEGYRIFQSMKRHCGI 440
            G   +GF  EAL    +M+  G+ K +++    LIA  S  G  +    +F+ M  + G+
Sbjct: 979  GYAQHGFVHEALBLVQKMQQAGV-KPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTAN-GV 1036

Query: 441  EPKLEHYSCLVDLLSRAGELEQALNIVESM---PMKPNLALWGTLLLACRNHQNVTLAEV 497
            EP +  ++ ++    +     +  +  + M      P+     +LL AC N  N+   + 
Sbjct: 1037 EPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGK- 1095

Query: 498  VVEGLVELKADDCGLYV--LLSNIYADAGMWEHALRIRKMMRKR 539
             + G   +   +  +YV   L ++YA  G    A  +  MM +R
Sbjct: 1096 EIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPER 1139



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 151/367 (41%), Gaps = 68/367 (18%)

Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG---NP----K 289
           P K  +S  +++ G+    DL  A  LF + P+R      + I    + G   +P    K
Sbjct: 39  PYKGCMSKGNVVGGWV---DLNNACILFEKTPKR----IGVSITESHRSGCTDDPEEGVK 91

Query: 290 EALYLFREMLCQ----GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
           EA +  R         G  P    V  A+S C + G ++LG+  H F+ +  +  D  V 
Sbjct: 92  EAGFFTRNETPHVEFGGGFPHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVC 151

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
           T+LIDMY KCG +D A R++  MT  +  + N +I+    NGF  +A + F Q+   G  
Sbjct: 152 TSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTR 211

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS------CLVDLLSRAGE 459
            +   +  +L  C       EG ++   +        K+++ S       L+ L S+ G 
Sbjct: 212 PNHYTYSTMLAVCGTISAIQEGKQLHAHVV-------KMQYLSETAVGNALLTLYSKCGM 264

Query: 460 LEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519
           +E+A  + ES+  + N+  W   +                                  N 
Sbjct: 265 MEEAEIVFESLRQR-NIISWTASI----------------------------------NG 289

Query: 520 YADAGMWEHALRIRKMMRKRKIKKE--TGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           +   G ++ AL+   MMR+  I+    T   V+   G +K+F+ G +F  Q  +  +   
Sbjct: 290 FYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASG 349

Query: 578 SFVKTTI 584
            FV T I
Sbjct: 350 VFVGTAI 356



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/398 (21%), Positives = 160/398 (40%), Gaps = 79/398 (19%)

Query: 188  FVECGEMGKAREVFDEMPQKDAISWSIMI---------------------DGYR------ 220
            + ECG++  AR++FD++P  +   W ++                      +G R      
Sbjct: 848  YTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVL 907

Query: 221  ----KKKGDISSAR-------ILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269
                K  G +S  R       ++ ++    D    +++I  Y+K G +  A ++F+ + +
Sbjct: 908  PSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVD 967

Query: 270  RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329
            +++   + M+ GYAQHG   EAL L ++M   GV+P+V+S    I+  +QVG   +   +
Sbjct: 968  KDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEV 1027

Query: 330  HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFG 389
               M  + +  D                               V+S+  +I+G   N   
Sbjct: 1028 FRLMTANGVEPD-------------------------------VVSWTSVISGFVQNFHN 1056

Query: 390  EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449
             E    F +M  +G     +    +L AC++      G  I        G+E  +   S 
Sbjct: 1057 HEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEI-HGYAMVIGVEKDVYVRSA 1115

Query: 450  LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509
            LVD+ ++ G + +A  +   MP + N   W +L+    NH     A   +E   +++  D
Sbjct: 1116 LVDMYAKCGYISEAKILFYMMPER-NTVTWNSLIFGYANHGYCNEA---IELFNQMEESD 1171

Query: 510  CGL----YVLLSNIYADAGMWEHALRI-RKMMRKRKIK 542
              L    +  + N  + AGM E    +  KM  K +I+
Sbjct: 1172 TKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIE 1209



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%)

Query: 4   LAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMD 63
           +A  +F+  N   +        T + QI ++L  +++ +     S L+ + T   +L  +
Sbjct: 413 VACNEFTYSNIFKACSSFPSLATTV-QIHSRLIKSNVESNLHVASSLIEAYTQCGSL--E 469

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            A ++F QI   +    N++I+ Y+Q+ +P KA+     M  +G    + T+  VL AC 
Sbjct: 470 NAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACS 529

Query: 124 VLMGLVEGTEIHGEVVK 140
               + EG E    +V+
Sbjct: 530 HSGLVQEGQEFFKSMVQ 546


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 166/517 (32%), Positives = 288/517 (55%), Gaps = 20/517 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ + ++FN + + N    N MI G+T +     A   ++ M  +G+  D  T+  V KA
Sbjct: 222 IEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKA 281

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI--KDLV 179
            G+L  + +  E+ G  +++G   +  V   LI M SKCG +  ARS+F    I  +   
Sbjct: 282 IGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNA 341

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK-------------KKGDI 226
            WN ++ G++  G   KA E+F +M Q D     I +D Y                 G  
Sbjct: 342 PWNAMISGYLRSGFNEKALELFAKMCQND-----IYLDHYTYCSVFNAIAALKCLSLGKK 396

Query: 227 SSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
             AR +   + +  +   N++ + YAK G L   +++FN M +R++ SW+ ++  Y+Q  
Sbjct: 397 VHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCS 456

Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
              +A+ +F  M  +G+ P+  +    + +CA +  L+ G+ +H  + +  + MD  +++
Sbjct: 457 EWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIES 516

Query: 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK 406
           AL+DMY KCG L +A+++F  ++  + +S+  +IAG   +G  ++AL+ F +M   G+  
Sbjct: 517 ALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEP 576

Query: 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466
           + + FL VL ACSH GL  EG + F+ MK+  G+ P++EHY+C+VDLLSR G L  A+  
Sbjct: 577 NAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEF 636

Query: 467 VESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMW 526
           +  MP++PN  +W TLL ACR H NV L E+  + ++  KA++   YVLLSN Y ++G +
Sbjct: 637 ISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSY 696

Query: 527 EHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           +  L +R +M+++ +KKE G S I ++G + +F +G+
Sbjct: 697 KDGLSLRHVMKEQGVKKEPGCSWISVNGTLHKFYAGD 733



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 122/490 (24%), Positives = 228/490 (46%), Gaps = 15/490 (3%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D A RLF+Q+ Q NT+    +I G  ++        F+  M+ +G+  D + Y  +L+
Sbjct: 120 DIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQ 179

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C  L  +  G  +H ++V  GF    FV   L+ MY+K   +  +  VF      ++VS
Sbjct: 180 ICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVS 239

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKG---DISSAR----ILF 233
           WN ++ GF        A ++F  M  +     +    G  K  G   D++ A+       
Sbjct: 240 WNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYAL 299

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNE--MPERNVFSWSIMIDGYAQHGNPKEA 291
           E     + +   ++ID  +K G L  A+ +FN   +  R    W+ MI GY + G  ++A
Sbjct: 300 ELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKA 359

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI-VQTALID 350
           L LF +M    +  D  +     +A A +  L LGK +H    +S + ++ + +  A+ +
Sbjct: 360 LELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVAN 419

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
            Y KCGSL++ R++F  M  +++IS+  ++         ++A++ F+ M  EGI  +   
Sbjct: 420 AYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFT 479

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
           F  VL++C++  L   G ++   + +  G++      S LVD+ ++ G L  A  +   +
Sbjct: 480 FSSVLVSCANLCLLEYGQQVHGIICK-VGLDMDKCIESALVDMYAKCGCLGDAKKVFNRI 538

Query: 471 PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA--DAGMWEH 528
                ++ W  ++     H  V  A  +   +V+L  +   +   L  ++A    G+ E 
Sbjct: 539 SNADTVS-WTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAV-TFLCVLFACSHGGLVEE 596

Query: 529 ALRIRKMMRK 538
            L+  K+M+K
Sbjct: 597 GLQYFKLMKK 606



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 189/417 (45%), Gaps = 47/417 (11%)

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLC--DVFVVNGLIGMYSKCGHMGCARSVFEGSEI 175
           +L+ C     L +   +HG ++K  F     + ++N +   YSKC  +  A  +F+    
Sbjct: 74  LLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQ 133

Query: 176 KDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWS----IMIDGYRKKKGDIS 227
           ++  SW +++ G  E G      E F EM  +    D  ++S    I I     + G++ 
Sbjct: 134 RNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMV 193

Query: 228 SARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN 287
            A+I+         +S  ++++ YAK+ ++  + ++FN M E NV SW+ MI G+  +  
Sbjct: 194 HAQIVIRGFTSHTFVS-TALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDL 252

Query: 288 PKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA 347
             +A  LF  M+ +GV PD  + +G   A   +  ++  K +  +     +  + +V TA
Sbjct: 253 YLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTA 312

Query: 348 LIDMYMKCGSLDEARRIFYS--MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
           LIDM  KCGSL EAR IF S  +T +    +N MI+G   +GF E+AL+ FA+M    I 
Sbjct: 313 LIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIY 372

Query: 406 KDDLIFLGVLIACS----------------HSGLATEGYRIFQSMKR---HCGI------ 440
            D   +  V  A +                 SGL      I  ++      CG       
Sbjct: 373 LDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRK 432

Query: 441 ------EPKLEHYSCLVDLLSRAGELEQALNIVESMP---MKPNLALWGTLLLACRN 488
                 +  L  ++ LV   S+  E ++A+ I  +M    + PN   + ++L++C N
Sbjct: 433 VFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCAN 489



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 116/237 (48%), Gaps = 11/237 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++   ++FN++   +     +++  Y+Q S   KA+  + NM+ +G+  + +T+  VL 
Sbjct: 426 SLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLV 485

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           +C  L  L  G ++HG + K+G   D  + + L+ MY+KCG +G A+ VF      D VS
Sbjct: 486 SCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVS 545

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQ----KDAISWSIMIDGYRKKKGDISSARILFEHM 236
           W  ++ G  + G +  A ++F  M Q     +A+++  ++       G +      F+ M
Sbjct: 546 WTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFAC-SHGGLVEEGLQYFKLM 604

Query: 237 P-----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
                 + ++  +  ++D  +++G L  A +  + MP E N   W  ++     HGN
Sbjct: 605 KKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGN 661


>gi|125548358|gb|EAY94180.1| hypothetical protein OsI_15952 [Oryza sativa Indica Group]
          Length = 655

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 170/527 (32%), Positives = 280/527 (53%), Gaps = 36/527 (6%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           +A  LFN+I   N    N M+ GY ++   ++A   +  M  +    D+ ++  ++    
Sbjct: 114 EARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWR----DDVSWLTMISGYI 169

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
               + E  E+   +          V N L+  Y + G+M  A  +F   + ++ VSWN+
Sbjct: 170 KRKHVREARELFDSMPS----PPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNV 225

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243
           ++ G+   G MG A+ +FDEMP+KD +S + ++ GY  + G + +A  +F+ MP +D ++
Sbjct: 226 MITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGY-LQNGSVDAAWKVFKDMPHRDTVA 284

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN--------PKE----- 290
           WN+M+DG+ +   L  A +LF+EMP+R+  SW  ++ GY Q G+        P+      
Sbjct: 285 WNTMMDGFVRNDRLDDALKLFSEMPDRDQISWHAILQGYVQQGDMDSANVWFPRAPNKDA 344

Query: 291 --------------ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS 336
                         AL L  EM+  G++PD  ++   IS CA + +L  GK +H++  ++
Sbjct: 345 ISWNTLISGYKDEGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKT 404

Query: 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF 396
               D +V ++LI MY KCG + EA ++F  + +++ +++N MIA    +G  +EALK F
Sbjct: 405 GFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVF 464

Query: 397 AQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456
             M   G   D   FL +L AC+H G   EG   F+SM+    + P+ +HYSC+VDLL R
Sbjct: 465 DMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGR 524

Query: 457 AGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLL 516
           +G + QA +    +P       W TL  AC +H  + L E++   +++ +  D G+Y LL
Sbjct: 525 SGFIHQAYDFTRRIPSDHRTTAWETLFSACNSHGEIQLGEIIARNVLKARPSDGGMYTLL 584

Query: 517 SNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           SNIYA   MW  A  +R  M++R +KKETG S IE+ G +  F S +
Sbjct: 585 SNIYAAKEMWSSAASVRGFMKERGLKKETGCSWIELKGEVVTFSSND 631



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 143/254 (56%), Gaps = 9/254 (3%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           +VF  N ++    +   +  AR VF+   +++ VSW  +L G+  CG + +ARE+F+ +P
Sbjct: 64  NVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELFNRIP 123

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
            ++ +SW+ M+ GY  + G +  AR LF+ MP +D +SW +MI GY K   +  A++LF+
Sbjct: 124 DRNVVSWNAMVSGY-ARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFD 182

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
            MP       + ++ GY + G  + A  LF +M  Q   P   +VM  I+  A+ G++ +
Sbjct: 183 SMPSPPTSVCNALLSGYVELGYMRAAEVLFGQM--QTRNPVSWNVM--ITGYARAGSMGI 238

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
            + +   M       D++ +TA++  Y++ GS+D A ++F  M  ++ +++N M+ G   
Sbjct: 239 AQRLFDEMPEK----DVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVR 294

Query: 386 NGFGEEALKCFAQM 399
           N   ++ALK F++M
Sbjct: 295 NDRLDDALKLFSEM 308



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 152/302 (50%), Gaps = 18/302 (5%)

Query: 152 GLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAIS 211
            L+  Y++CG +  AR +F     +++VSWN ++ G+   G + +ARE+FD MP +D +S
Sbjct: 101 ALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVS 160

Query: 212 WSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271
           W  MI GY K+K  +  AR LF+ MP       N+++ GY ++G + AA+ LF +M  RN
Sbjct: 161 WLTMISGYIKRK-HVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRN 219

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV 331
             SW++MI GYA+ G+   A  LF EM       DV+S    +    Q G++D   W  V
Sbjct: 220 PVSWNVMITGYARAGSMGIAQRLFDEM----PEKDVLSRTAIMRGYLQNGSVD-AAW-KV 273

Query: 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391
           F  +     D +    ++D +++   LD+A ++F  M  ++ IS++ ++ G    G  + 
Sbjct: 274 F--KDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWHAILQGYVQQGDMDS 331

Query: 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
           A   F +      P  D I    LI    SG   EG     S     G++P     S ++
Sbjct: 332 ANVWFPR-----APNKDAISWNTLI----SGYKDEGALSLLSEMIRGGLKPDQATLSVVI 382

Query: 452 DL 453
            +
Sbjct: 383 SI 384



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 184/372 (49%), Gaps = 21/372 (5%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           DVF  N  I  + + G +  AR VF+    +++ +WN ++ G +    + +AR+VFD MP
Sbjct: 33  DVFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMP 92

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
            ++++SW+ ++ GY  + G ++ AR LF  +P ++++SWN+M+ GYA+ G +  A++LF+
Sbjct: 93  VRNSVSWAALLTGY-ARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFD 151

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
            MP R+  SW  MI GY +  + +EA  LF  M      P        +S   ++G +  
Sbjct: 152 MMPWRDDVSWLTMISGYIKRKHVREARELFDSM----PSPPTSVCNALLSGYVELGYMRA 207

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
            + +   M+    T + +    +I  Y + GS+  A+R+F  M +K+V+S   ++ G   
Sbjct: 208 AEVLFGQMQ----TRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQ 263

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           NG  + A K F  M      +D + +  ++     +    +  ++F  M     I     
Sbjct: 264 NGSVDAAWKVFKDMPH----RDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQIS---- 315

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
            +  ++    + G+++ A       P K  ++ W TL+   ++   ++L   ++ G   L
Sbjct: 316 -WHAILQGYVQQGDMDSANVWFPRAPNKDAIS-WNTLISGYKDEGALSLLSEMIRG--GL 371

Query: 506 KADDCGLYVLLS 517
           K D   L V++S
Sbjct: 372 KPDQATLSVVIS 383



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 124/301 (41%), Gaps = 81/301 (26%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +M  A+RLF+++ + +      ++RGY Q+ +   A   + +M                 
Sbjct: 235 SMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMP---------------- 278

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
                         H + V    + D FV N           +  A  +F     +D +S
Sbjct: 279 --------------HRDTVAWNTMMDGFVRN---------DRLDDALKLFSEMPDRDQIS 315

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK--------------KGDI 226
           W+ +L+G+V+ G+M  A   F   P KDAISW+ +I GY+ +              K D 
Sbjct: 316 WHAILQGYVQQGDMDSANVWFPRAPNKDAISWNTLISGYKDEGALSLLSEMIRGGLKPDQ 375

Query: 227 SSARIL------------------------FEHMPIKDLISWNSMIDGYAKIGDLVAAQQ 262
           ++  ++                        FEH    D +  +S+I  Y+K G +  A Q
Sbjct: 376 ATLSVVISICASLVSLGCGKMVHLWAIKTGFEH----DALVMSSLISMYSKCGLISEASQ 431

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F  + +R+  +W+ MI  YA HG   EAL +F  M   G RPD  + +  +SACA  G 
Sbjct: 432 VFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGY 491

Query: 323 L 323
           L
Sbjct: 492 L 492


>gi|125541284|gb|EAY87679.1| hypothetical protein OsI_09093 [Oryza sativa Indica Group]
          Length = 493

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 146/342 (42%), Positives = 220/342 (64%)

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           LF+ MP++  +++N++I G  + G + AA ++F+ MP  +  SW+ +IDG  ++G   EA
Sbjct: 127 LFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEA 186

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           +  FR ML  GV PD ++++  ISACA+VGAL LG W+H  + R  +  ++ +  +LIDM
Sbjct: 187 INCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDM 246

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y +CG ++ AR++F  M K+ V+S+N MI G   NG   +A++ F  M  EG   D + F
Sbjct: 247 YARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTF 306

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
            GVL ACSH GL  EG R +  M+   GI  ++EHY C+VDLL R+G LE+A+ +V +MP
Sbjct: 307 TGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGRLEEAMRVVTTMP 366

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           M+PN  + G LL  CR H +V +AE +++ L+EL       YVLLSNIYA  G W+ A +
Sbjct: 367 MRPNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKWDGAGK 426

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELE 573
           +R +M+ R ++K  G S +EIDG++ EFVSG+    Q+EE+ 
Sbjct: 427 VRSLMKARGLRKRPGYSAVEIDGDVHEFVSGDRSHPQAEEIS 468



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/298 (27%), Positives = 138/298 (46%), Gaps = 47/298 (15%)

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMY--SKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
            +H  V+K+ F   + +   L+  Y  S+  H+  A  +F+   ++  V++N V+ G + 
Sbjct: 92  SVHARVLKL-FPSHLLLSTCLVRFYFASRLPHL--ALQLFDAMPVRSAVTYNTVISGLMR 148

Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI----KDLIS--- 243
            G +  A EVFD MP  D +SW+ +IDG   K G    A   F  M +     D ++   
Sbjct: 149 NGLVAAAFEVFDGMPAPDKVSWTALIDGC-VKNGRHDEAINCFRAMLLDGVEPDYVTLIA 207

Query: 244 ---------------W-----------------NSMIDGYAKIGDLVAAQQLFNEMPERN 271
                          W                 NS+ID YA+ G +  A+Q+F+ M +R 
Sbjct: 208 VISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMRKRT 267

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIH 330
           V SW+ MI G+A +G   +A+  F  M  +G +PD ++  G ++AC+  G  D G ++  
Sbjct: 268 VVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVLTACSHGGLTDEGLRYYD 327

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG 387
           +      I   M     ++D+  + G L+EA R+  +M  + N +    ++AG  M+G
Sbjct: 328 LMRAEYGIAARMEHYGCVVDLLGRSGRLEEAMRVVTTMPMRPNEVVLGALLAGCRMHG 385



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 130/300 (43%), Gaps = 19/300 (6%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           L   LV     S+     LQ+   +     +T    +S L+      N L +  A  +F+
Sbjct: 107 LSTCLVRFYFASRLPHLALQLFDAMPVRSAVTYNTVISGLMR-----NGL-VAAAFEVFD 160

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
            +  P+      +I G  ++    +A++ +  M   G+  D  T   V+ AC  +  L  
Sbjct: 161 GMPAPDKVSWTALIDGCVKNGRHDEAINCFRAMLLDGVEPDYVTLIAVISACAEVGALGL 220

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G  +H  VV+ G   +V + N LI MY++CG +  AR VF G   + +VSWN ++ GF  
Sbjct: 221 GMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAA 280

Query: 191 CGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILF------EHMPIKD 240
            G    A E F+ M ++    DA++++ ++       G ++   + +      E+     
Sbjct: 281 NGRCADAVEHFEAMRREGFKPDAVTFTGVLTAC--SHGGLTDEGLRYYDLMRAEYGIAAR 338

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQHGNPKEALYLFREML 299
           +  +  ++D   + G L  A ++   MP R N      ++ G   HG+   A  L + +L
Sbjct: 339 MEHYGCVVDLLGRSGRLEEAMRVVTTMPMRPNEVVLGALLAGCRMHGDVGMAEQLMQHLL 398



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 109/250 (43%), Gaps = 38/250 (15%)

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR--PDVISVMGAISACAQVGALDLGKW 328
           +V SW+  I   A+ G+   A      ML       P+ ++++  +SACA   +  L + 
Sbjct: 29  DVASWTSAIARPAKQGDLPAAAAALSAMLSSPAAPVPNDVTLLTVLSACADSPSSPLARR 88

Query: 329 IHVFMKRSRITM---DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL-- 383
           + + +    + +    +++ T L+  Y        A ++F +M  ++ ++YN +I+GL  
Sbjct: 89  LALSVHARVLKLFPSHLLLSTCLVRFYFASRLPHLALQLFDAMPVRSAVTYNTVISGLMR 148

Query: 384 ------------GM-----------------NGFGEEALKCFAQMETEGIPKDDLIFLGV 414
                       GM                 NG  +EA+ CF  M  +G+  D +  + V
Sbjct: 149 NGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAINCFRAMLLDGVEPDYVTLIAV 208

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           + AC+  G    G  + + + R  G+E  +   + L+D+ +R G++E A  +   M  K 
Sbjct: 209 ISACAEVGALGLGMWVHRLVVRQ-GLERNVRIANSLIDMYARCGQVELARQVFSGM-RKR 266

Query: 475 NLALWGTLLL 484
            +  W ++++
Sbjct: 267 TVVSWNSMIV 276


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 164/455 (36%), Positives = 277/455 (60%), Gaps = 9/455 (1%)

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           ++H +V   G + D+ V N L+ M +K   +  A  +F   E +D VSW++++ GFV+ G
Sbjct: 21  QVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKNG 80

Query: 193 EMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISS----ARILFEHMPIKDLISW 244
           +  +  + F E+     + D  S   +I   R   G I      + +L   + + + +  
Sbjct: 81  DYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVC- 139

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           ++++D YAK G +  A+QLF+ MP++++ + ++MI GYA+ G P E+  LF +M   G  
Sbjct: 140 STLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFV 199

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
           PD ++++  ++ACA++GA++  + +H ++   R ++D+ + TA+IDMY KCGS+D +R I
Sbjct: 200 PDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREI 259

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F  M +KNVIS++ MI   G +G G EAL+ F  M   GI  + + F+ +L ACSH+GL 
Sbjct: 260 FDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAGLV 319

Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
            +G ++F  M    G+ P ++HY+C+VDLL RAG L+QAL ++E+M ++ +  +W   L 
Sbjct: 320 DDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLG 379

Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
           ACR H+ V LAE   + L+ L+  + G Y+LLSNIYA+AG W+   +IR +M KR++KK 
Sbjct: 380 ACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKI 439

Query: 545 TGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSF 579
            G + IE+D  I  F +G+   ++S E+  +++S 
Sbjct: 440 PGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSL 474



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 114/365 (31%), Positives = 196/365 (53%), Gaps = 16/365 (4%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
            +S L   +    I Q+ AQ+TT  +I +    ++LL        L    A  LFN++ +
Sbjct: 6   FISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLV--TAHLLFNKMEE 63

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
            +    + MI G+ ++ + ++    +  + R G   DN++ PFV+KAC   MGL+ G  I
Sbjct: 64  RDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLI 123

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           H  V+K G   D FV + L+ MY+KCG +  A+ +F+    KDLV+  +++ G+ ECG+ 
Sbjct: 124 HSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKP 183

Query: 195 GKAREVFDEM------PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK----DLISW 244
            ++  +FD+M      P K A+   + I     K G ++ AR++ +++  +    D+   
Sbjct: 184 NESWVLFDQMRRDGFVPDKVAM---VTIVNACAKLGAMNKARLVHDYVCARRYSLDVELG 240

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
            +MID YAK G + +++++F+ M ++NV SWS MI  Y  HG  +EAL LF  ML  G+ 
Sbjct: 241 TAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGII 300

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSR-ITMDMIVQTALIDMYMKCGSLDEARR 363
           P+ I+ +  + AC+  G +D G  +   M  S  +  D+   T ++D+  + G LD+A R
Sbjct: 301 PNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALR 360

Query: 364 IFYSM 368
           +  +M
Sbjct: 361 LIENM 365



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 5/149 (3%)

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
           K +H  +  + I  D+IV   L+ M  K   L  A  +F  M +++ +S++VMI G   N
Sbjct: 20  KQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKN 79

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
           G  E   + F ++   G   D+     V+ AC  +     G R+  S     G+   L++
Sbjct: 80  GDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMG-RLIHSTVLKNGLH--LDN 136

Query: 447 YSC--LVDLLSRAGELEQALNIVESMPMK 473
           + C  LVD+ ++ G ++ A  + + MP K
Sbjct: 137 FVCSTLVDMYAKCGMIDNAKQLFDRMPKK 165


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 171/472 (36%), Positives = 277/472 (58%), Gaps = 11/472 (2%)

Query: 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK 176
           F + A      L +  ++H +    G L ++ V N LI  YS    +  A  +F+G  ++
Sbjct: 64  FYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVR 123

Query: 177 DLVSWNLVLRGFVECGE----MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARIL 232
           D VSW++++ GF + G+     G  RE+     + D  +   +I   R  K ++   R L
Sbjct: 124 DSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLK-NLQMGR-L 181

Query: 233 FEHMPIK-----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN 287
             H+  K     D     +++D Y K  ++  A+ LF++M ER++ +W++MI GYA+ G 
Sbjct: 182 IHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGK 241

Query: 288 PKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA 347
             E+L LF +M  +GV PD ++++  + ACA++GA+   + I  +++R +  +D+I+ TA
Sbjct: 242 ANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTA 301

Query: 348 LIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407
           +IDMY KCG ++ AR IF  M +KNVIS++ MIA  G +G G +AL  F  M + G+  D
Sbjct: 302 MIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPD 361

Query: 408 DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467
            +    +L ACSH+GL  EG R F SM     +   ++HY+C+VDLL RAG L++AL ++
Sbjct: 362 KITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLI 421

Query: 468 ESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWE 527
           +SM ++ +  LWG  L ACR H++V LAE     L+EL++ + G YVLLSNIYA+AG WE
Sbjct: 422 KSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWE 481

Query: 528 HALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSF 579
              +IR +M +R++KK  G + IE+D    +F  G+    +S+E+  +++S 
Sbjct: 482 DVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSL 533



 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 166/461 (36%), Positives = 271/461 (58%), Gaps = 11/461 (2%)

Query: 128  LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
            L +  ++H +    G L ++ V N L+  YS    +  A  +F+G  ++D VSW++++ G
Sbjct: 751  LTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 810

Query: 188  FVECGE----MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK---- 239
            F + G+     G  RE+     + D  +   +I   R  K ++   R L  H+  K    
Sbjct: 811  FAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLK-NLQMGR-LIHHIVYKFGLD 868

Query: 240  -DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
             D     +++D Y K  ++  A+ LF++M ER++ +W++MI GYA+ GN  E+L LF +M
Sbjct: 869  LDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKM 928

Query: 299  LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
              +GV PD ++++  + ACA++GA+   + I  +++R +  +D+I+ TA+IDM+ KCG +
Sbjct: 929  REEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCV 988

Query: 359  DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
            + AR IF  M +KNVIS++ MIA  G +G G +AL  F  M   GI  + +  + +L AC
Sbjct: 989  ESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYAC 1048

Query: 419  SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
            SH+GL  EG R F  M     +   ++HY+C+VDLL RAG L++AL ++ SM  + +  L
Sbjct: 1049 SHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGL 1108

Query: 479  WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
            WG  L ACR H++V LAE     L+EL+  + G Y+LLSNIYA+AG WE   +IR +M +
Sbjct: 1109 WGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQ 1168

Query: 539  RKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSF 579
            R++KK  G + IE+D    +F  G+    +S+E+  +++S 
Sbjct: 1169 RRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSL 1209



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/370 (30%), Positives = 192/370 (51%), Gaps = 18/370 (4%)

Query: 13  NP--LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           NP   +S L   +  T + Q+ AQ + + ++      ++L+   +    L  D A  LF+
Sbjct: 61  NPKFYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRAL--DDAYGLFD 118

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
            +   ++   + M+ G+ +  +       +  + R G   DNYT PFV++AC  L  L  
Sbjct: 119 GMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQM 178

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G  IH  V K G   D FV   L+ MY KC  +  AR +F+  + +DLV+W +++ G+ E
Sbjct: 179 GRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAE 238

Query: 191 CGEMGKAREVFDEM------PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK----D 240
           CG+  ++  +F++M      P K A+   + +     K G +  ARI+ +++  K    D
Sbjct: 239 CGKANESLVLFEKMREEGVVPDKVAM---VTVVFACAKLGAMHKARIIDDYIQRKKFQLD 295

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
           +I   +MID YAK G + +A+++F+ M E+NV SWS MI  Y  HG  ++AL LF  ML 
Sbjct: 296 VILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLS 355

Query: 301 QGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
            G+ PD I++   + AC+  G ++ G ++     +   +  D+   T ++D+  + G LD
Sbjct: 356 SGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLD 415

Query: 360 EARRIFYSMT 369
           EA ++  SMT
Sbjct: 416 EALKLIKSMT 425



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/355 (29%), Positives = 183/355 (51%), Gaps = 16/355 (4%)

Query: 26   THILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIR 85
            T + Q+  Q + + ++      ++L+   +    L  D A  LF+ +   ++   + M+ 
Sbjct: 752  TQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRAL--DDAYGLFDGMCVRDSVSWSVMVG 809

Query: 86   GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC 145
            G+ +  +       +  + R G   DNYT PFV++AC  L  L  G  IH  V K G   
Sbjct: 810  GFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDL 869

Query: 146  DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM- 204
            D FV   L+ MY KC  +  AR +F+    +DLV+W +++ G+ ECG   ++  +FD+M 
Sbjct: 870  DHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMR 929

Query: 205  -----PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK----DLISWNSMIDGYAKIG 255
                 P K A+   + +     K G +  AR + +++  K    D+I   +MID +AK G
Sbjct: 930  EEGVVPDKVAM---VTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCG 986

Query: 256  DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
             + +A+++F+ M E+NV SWS MI  Y  HG  ++AL LF  ML  G+ P+ I+++  + 
Sbjct: 987  CVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLY 1046

Query: 316  ACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369
            AC+  G ++ G ++     +   +  D+   T ++D+  + G LDEA ++  SMT
Sbjct: 1047 ACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMT 1101


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 164/489 (33%), Positives = 261/489 (53%), Gaps = 41/489 (8%)

Query: 115 YPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174
           Y  ++ AC     L  G  +H       F+  + + N LI MY+KCG +  A+ +F+   
Sbjct: 66  YSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIP 125

Query: 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFE 234
            KDL SWN ++ G+   G + +AR++FDEMP +D  SW+ +I GY   +G    A  LF 
Sbjct: 126 QKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGY-VSQGWYMEALDLFR 184

Query: 235 HMPIK----------------------------------------DLISWNSMIDGYAKI 254
            M                                           D + W +++D Y K 
Sbjct: 185 MMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKC 244

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
           G L  A+ +F++M ++++ SW+ MI    + G  KE   LFR+++  GVRP+  +  G +
Sbjct: 245 GSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVL 304

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
           +ACA + A  +GK +H +M R          +AL+ +Y KCG+ + ARR+F  M + +++
Sbjct: 305 NACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLV 364

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434
           S+  +I G   NG  + AL+ F  +   G   D++ F+GVL AC+H+GL   G   F S+
Sbjct: 365 SWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSV 424

Query: 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTL 494
           K   G+    +HY+C++DLL+R+G  ++A NI+++MPMKP+  LW +LL  CR H N+ L
Sbjct: 425 KEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIEL 484

Query: 495 AEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDG 554
           AE   + L EL+ ++   Y+ LSNIYA+AG+W    ++R  M  R I K+ G+S IEI  
Sbjct: 485 AERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKR 544

Query: 555 NIKEFVSGE 563
            +  F+ G+
Sbjct: 545 QVHVFLVGD 553



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 188/395 (47%), Gaps = 27/395 (6%)

Query: 58  NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKR-KGLLVDNYTYP 116
           N   ++QA +LF+++   + +  N +I GY       +AL  +  M+  +    + +T  
Sbjct: 141 NVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLS 200

Query: 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK 176
             L A   +  L  G EIHG +++ G   D  V   L+ +Y KCG +  AR +F+    K
Sbjct: 201 SALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADK 260

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           D+VSW  ++     C E G+ +E F     +D +   +  + Y       + A +  E M
Sbjct: 261 DIVSWTTMIH---RCFEDGRKKEGFSLF--RDLMGSGVRPNEYTFAGVLNACADLAAEQM 315

Query: 237 PIK----------DLISW--NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQ 284
             +          D  S+  ++++  Y+K G+   A+++FN+MP  ++ SW+ +I GYAQ
Sbjct: 316 GKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQ 375

Query: 285 HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMI 343
           +G P  AL  F  +L  G +PD I+ +G +SAC   G +D+G ++ H   ++  +     
Sbjct: 376 NGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTAD 435

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG---FGEEALKCFAQM 399
               +ID+  + G   EA  I  +M  K +   +  ++ G  ++G     E A K   ++
Sbjct: 436 HYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFEL 495

Query: 400 ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434
           E    P++   ++ +    +++GL TE  ++   M
Sbjct: 496 E----PENPATYITLSNIYANAGLWTEETKVRNDM 526



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 102/235 (43%), Gaps = 37/235 (15%)

Query: 43  EPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVN 102
           +PF+ +   +        N + A R+FNQ+ +P+     ++I GY Q+  P  AL F+ +
Sbjct: 329 DPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFES 388

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           + R G   D  T+  VL AC    GLV+        + + +   V   +GL+       H
Sbjct: 389 LLRSGTKPDEITFVGVLSAC-THAGLVD--------IGLEYFHSVKEKHGLV---HTADH 436

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK-DAISWSIMIDGYRK 221
             C         + DL++           G   +A  + D MP K D   W+ ++ G R 
Sbjct: 437 YAC---------VIDLLA---------RSGRFKEAENIIDNMPMKPDKFLWASLLGGCR- 477

Query: 222 KKGDIS----SARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
             G+I     +A+ LFE  P ++  ++ ++ + YA  G      ++ N+M  R +
Sbjct: 478 IHGNIELAERAAKALFELEP-ENPATYITLSNIYANAGLWTEETKVRNDMDNRGI 531


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 179/519 (34%), Positives = 295/519 (56%), Gaps = 14/519 (2%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYV-NMKRKGLLVDNYTYPFVLKAC 122
            A R+F+++   ++  +NTMI GY +    ++++  ++ N+ +     D  T   VL+AC
Sbjct: 260 DARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQ--FKPDLLTVSSVLRAC 317

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
           G L  L     I+  ++K GF+ +  V N LI +Y+KCG M  AR VF   E KD VSWN
Sbjct: 318 GHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWN 377

Query: 183 LVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARILFEHMPI 238
            ++ G+++ G++ +A ++F  M     Q D I++ +M+     +  D+   + L  +  I
Sbjct: 378 SIISGYIQSGDLMEAMKLFKMMMIMEEQADHITY-LMLISVSTRLADLKFGKGLHSN-GI 435

Query: 239 K-----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
           K     DL   N++ID YAK G++  + ++F+ M   +  +W+ +I    + G+    L 
Sbjct: 436 KSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQ 495

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           +  +M    V PD+ + +  +  CA + A  LGK IH  + R     ++ +  ALI+MY 
Sbjct: 496 VTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYS 555

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCG L+ + R+F  M++++V+++  MI   GM G GE+AL+ FA ME  GI  D ++F+ 
Sbjct: 556 KCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIA 615

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           ++ ACSHSGL  EG   F+ MK H  I+P +EHY+C+VDLLSR+ ++ +A   +++MP+K
Sbjct: 616 IIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIK 675

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
           P+ ++W ++L ACR   ++  AE V   ++EL  DD G  +L SN YA    W+    IR
Sbjct: 676 PDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIR 735

Query: 534 KMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           K ++ + I K  G S IE+  N+  F SG+    QSE +
Sbjct: 736 KSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAI 774



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 121/418 (28%), Positives = 215/418 (51%), Gaps = 10/418 (2%)

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           N Y+ N++IR ++++    +AL FY  ++   +  D YT+P V+KAC  L     G  ++
Sbjct: 70  NVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVY 129

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
            +++ MGF  D+FV N L+ MYS+ G +  AR VF+   ++DLVSWN ++ G+   G   
Sbjct: 130 EQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYE 189

Query: 196 KAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR-------ILFEHMPIKDLISWNSMI 248
           +A E++ E+     +  S  +       G++   +          +      ++  N ++
Sbjct: 190 EALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLV 249

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
             Y K      A+++F+EM  R+  S++ MI GY +    +E++ +F E L Q  +PD++
Sbjct: 250 AMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQ-FKPDLL 308

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           +V   + AC  +  L L K+I+ +M ++   ++  V+  LID+Y KCG +  AR +F SM
Sbjct: 309 TVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSM 368

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
             K+ +S+N +I+G   +G   EA+K F  M       D + +L +LI+ S      +  
Sbjct: 369 ECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYL-MLISVSTRLADLKFG 427

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           +   S     GI   L   + L+D+ ++ GE+  +L I  SM     +  W T++ AC
Sbjct: 428 KGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVT-WNTVISAC 484



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 221/433 (51%), Gaps = 14/433 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           + +A ++F+++   +    N++I GY+     ++AL  Y  +K   ++ D++T   VL A
Sbjct: 157 LTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPA 216

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
            G L+ + +G  +HG  +K G    V V NGL+ MY K      AR VF+  +++D VS+
Sbjct: 217 FGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSY 276

Query: 182 NLVLRGFVECGEMGKAREVFDE-----MPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
           N ++ G+++   + ++  +F E      P    +S  +   G+ +   D+S A+ ++ +M
Sbjct: 277 NTMICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLR---DLSLAKYIYNYM 333

Query: 237 PIKDLI----SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
                +      N +ID YAK GD++ A+ +FN M  ++  SW+ +I GY Q G+  EA+
Sbjct: 334 LKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAM 393

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            LF+ M+    + D I+ +  IS   ++  L  GK +H    +S I +D+ V  ALIDMY
Sbjct: 394 KLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMY 453

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCG + ++ +IF SM   + +++N +I+     G     L+   QM    +  D   FL
Sbjct: 454 AKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFL 513

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
             L  C+       G  I   + R  G E +L+  + L+++ S+ G LE +  + E M  
Sbjct: 514 VTLPMCASLAAKRLGKEIHCCLLRF-GYESELQIGNALIEMYSKCGCLENSSRVFERMSR 572

Query: 473 KPNLALWGTLLLA 485
           + ++  W  ++ A
Sbjct: 573 R-DVVTWTGMIYA 584



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 186/380 (48%), Gaps = 19/380 (5%)

Query: 116 PFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG-SE 174
           PF+ +A      L E   IH  V+ +G     F    LI  YS       + SVF   S 
Sbjct: 8   PFISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSP 67

Query: 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDG----YRKKKGDI 226
            K++  WN ++R F + G   +A E + ++ +     D  ++  +I      +  + GD+
Sbjct: 68  AKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDL 127

Query: 227 SSARIL---FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
              +IL   FE     DL   N+++D Y+++G L  A+Q+F+EMP R++ SW+ +I GY+
Sbjct: 128 VYEQILDMGFE----SDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYS 183

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
            HG  +EAL ++ E+    + PD  +V   + A   +  +  G+ +H F  +S +   ++
Sbjct: 184 SHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVV 243

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           V   L+ MY+K     +ARR+F  M  ++ +SYN MI G       EE+++ F +   + 
Sbjct: 244 VNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQF 303

Query: 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
            P D L    VL AC H    +    I+  M +  G   +    + L+D+ ++ G++  A
Sbjct: 304 KP-DLLTVSSVLRACGHLRDLSLAKYIYNYMLK-AGFVLESTVRNILIDVYAKCGDMITA 361

Query: 464 LNIVESMPMKPNLALWGTLL 483
            ++  SM  K  ++ W +++
Sbjct: 362 RDVFNSMECKDTVS-WNSII 380



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 167/375 (44%), Gaps = 16/375 (4%)

Query: 11  LKNPLVSLLQISKTTTHILQI-LAQLTTNDLITEPFTLSQLLMSL---TSPNTLNMDQAE 66
            K  L+++  + +   H+  + LA+   N ++   F L   + ++         +M  A 
Sbjct: 303 FKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITAR 362

Query: 67  RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
            +FN +   +T   N++I GY QS +  +A+  +  M       D+ TY  ++     L 
Sbjct: 363 DVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLA 422

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
            L  G  +H   +K G   D+ V N LI MY+KCG +G +  +F      D V+WN V+ 
Sbjct: 423 DLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVIS 482

Query: 187 GFVECGEMGKAREVFDEMPQKDA--------ISWSIMIDGYRKKKG-DISSARILFEHMP 237
             V  G+     +V  +M + +         ++  +      K+ G +I    + F +  
Sbjct: 483 ACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYE- 541

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
             +L   N++I+ Y+K G L  + ++F  M  R+V +W+ MI  Y  +G  ++AL  F +
Sbjct: 542 -SELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFAD 600

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA-LIDMYMKCG 356
           M   G+ PD +  +  I AC+  G +D G      MK       MI   A ++D+  +  
Sbjct: 601 MEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQ 660

Query: 357 SLDEARRIFYSMTKK 371
            + +A     +M  K
Sbjct: 661 KISKAEEFIQAMPIK 675


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 182/537 (33%), Positives = 297/537 (55%), Gaps = 23/537 (4%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A ++F+ + + N    + ++ G+  + + + +LS +  M R+G+  + +T+   LKACG+
Sbjct: 431 AYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGL 490

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L  L +G +IHG  +K+GF   V V N L+ MYSKCG +  A  VF     + L+SWN +
Sbjct: 491 LNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAM 550

Query: 185 LRGFVECGEMGKAREVFDEMPQKD---------------AISWSIMIDGYRKKKGDISSA 229
           + GFV  G   KA + F  M + +               A S + MI   ++  G +  +
Sbjct: 551 IAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRS 610

Query: 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
                H P    I+  S++D Y K G L +A++ F+++ E+ + SWS +I GYAQ G   
Sbjct: 611 GF---HCPSSATIT-GSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFV 666

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           EA+ LF+ +     + D  ++   I   A    L  GK +     +    ++  V  +++
Sbjct: 667 EAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVV 726

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           DMY+KCG +DEA + F  M  K+VIS+ V+I G G +G G+++++ F +M    I  D++
Sbjct: 727 DMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEV 786

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            +L VL ACSHSG+  EG  +F  +    GI+P++EHY+C+VDLL RAG L++A +++++
Sbjct: 787 CYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDT 846

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           MP+KPN+ +W TLL  CR H ++ L + V + L+ + A +   YV++SN+Y  AG W   
Sbjct: 847 MPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQ 906

Query: 530 LRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586
              R++   + +KKE G S +EI+  +  F SGE     S  L  VIQ  +K    R
Sbjct: 907 GNARELGNIKGLKKEAGMSWVEIEREVHFFRSGE----DSHPLTPVIQETLKEAERR 959



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 101/320 (31%), Positives = 163/320 (50%), Gaps = 15/320 (4%)

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
           E  P  +LI+ N +ID Y K  + + A ++F+ MPERNV SWS ++ G+  +G+ K +L 
Sbjct: 405 ETKPWLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLS 464

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           LF EM  QG+ P+  +    + AC  + AL+ G  IH F  +    M + V  +L+DMY 
Sbjct: 465 LFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYS 524

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK--DDLIF 411
           KCG ++EA ++F  +  +++IS+N MIAG    G+G +AL  F  M+   I +  D+   
Sbjct: 525 KCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTL 584

Query: 412 LGVLIACSHSGLATEGYRIFQSMKR---HCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468
             +L ACS +G+   G +I   + R   HC     +     LVDL  + G L  A    +
Sbjct: 585 TSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATIT--GSLVDLYVKCGYLFSARKAFD 642

Query: 469 SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA--DDCGLYVLLSNIYADAGMW 526
            +  K  ++ W +L+L          A  + + L EL +  D   L  ++  ++AD  + 
Sbjct: 643 QIKEKTMIS-WSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIG-VFADFAL- 699

Query: 527 EHALRIRKMMRKRKIKKETG 546
              LR  K M+   +K  +G
Sbjct: 700 ---LRQGKQMQALAVKLPSG 716



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 173/342 (50%), Gaps = 19/342 (5%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGL--LVDNYTYPFVL 119
           +++AE++F +I   +    N MI G+  +    KAL  +  M+   +    D +T   +L
Sbjct: 529 INEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLL 588

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLC--DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           KAC     +  G +IHG +V+ GF C     +   L+ +Y KCG++  AR  F+  + K 
Sbjct: 589 KACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKT 648

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGY------RKKKGDIS 227
           ++SW+ ++ G+ + GE  +A  +F  +     Q D+ + S +I  +      R+ K   +
Sbjct: 649 MISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQA 708

Query: 228 SARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN 287
            A  L   +    L   NS++D Y K G +  A++ F EM  ++V SW+++I GY +HG 
Sbjct: 709 LAVKLPSGLETSVL---NSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGL 765

Query: 288 PKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA 347
            K+++ +F EML   + PD +  +  +SAC+  G +  G+ +   +  +      +   A
Sbjct: 766 GKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYA 825

Query: 348 -LIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG 387
            ++D+  + G L EA+ +  +M  K NV  +  +++   ++G
Sbjct: 826 CVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHG 867



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 169/360 (46%), Gaps = 23/360 (6%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           ++   N LI MY KC     A  VF+    +++VSW+ ++ G V  G++  +  +F EM 
Sbjct: 411 NLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMG 470

Query: 206 QKDAISWSIMIDGYRKKKGDISS-----------ARILFEHMPIKDLISWNSMIDGYAKI 254
           ++             K  G +++            +I FE M    +   NS++D Y+K 
Sbjct: 471 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMM----VEVGNSLVDMYSKC 526

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV--RPDVISVMG 312
           G +  A+++F  + +R++ SW+ MI G+   G   +AL  F  M    +  RPD  ++  
Sbjct: 527 GRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTS 586

Query: 313 AISACAQVGALDLGKWIHVFMKRS--RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
            + AC+  G +  GK IH F+ RS         +  +L+D+Y+KCG L  AR+ F  + +
Sbjct: 587 LLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKE 646

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           K +IS++ +I G    G   EA+  F +++      D      ++   +   L  +G ++
Sbjct: 647 KTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQM 706

Query: 431 FQ-SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
              ++K   G+E  +   + +VD+  + G +++A      M +K  ++ W  ++     H
Sbjct: 707 QALAVKLPSGLETSV--LNSVVDMYLKCGLVDEAEKCFAEMQLKDVIS-WTVVITGYGKH 763


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 149/358 (41%), Positives = 233/358 (65%)

Query: 224 GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
           G +SS   +F+     DL++  +M++  AK GD+  A+++F+EMPER+  +W+ MI GYA
Sbjct: 161 GCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYA 220

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
           Q G  +EAL +F  M  +GV+ + +S++  +SAC  +  LD G+W+H +++R ++ M + 
Sbjct: 221 QCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVT 280

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           + TAL+DMY KCG++D A ++F+ M ++NV +++  I GL MNGFGEE+L  F  M+ EG
Sbjct: 281 LGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREG 340

Query: 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
           +  + + F+ VL  CS  GL  EG + F SM+   GI P+LEHY  +VD+  RAG L++A
Sbjct: 341 VQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEA 400

Query: 464 LNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA 523
           LN + SMPM+P++  W  LL ACR ++N  L E+    +VEL+  + G YVLLSNIYAD 
Sbjct: 401 LNFINSMPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELEDKNDGAYVLLSNIYADY 460

Query: 524 GMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
             WE    +R+ M+ + +KK  G SVIE+DG + EF+ G+    + +E+E+ ++   K
Sbjct: 461 KNWESVSSLRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGDKSHPRYDEIEMKLEEISK 518



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/407 (31%), Positives = 203/407 (49%), Gaps = 42/407 (10%)

Query: 4   LAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMD 63
           + + K   K+P +SLL    T   + QI AQL    ++  P    Q + ++   NT N+D
Sbjct: 1   MKSVKRIAKHPTISLLNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLD 60

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM---KRKGLLVDNYTYPFVLK 120
            A +L N    P  +  N+MIR Y++SS P K+  FY N+       L  DNYT+ F+++
Sbjct: 61  YANKLLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVR 120

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C  L   V G  +HG V+K GF  D  V  GL+ MY++ G +    +VF+G+   DLV+
Sbjct: 121 TCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVT 180

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK------------------- 221
              +L    +CG++  AR++FDEMP++D ++W+ MI GY +                   
Sbjct: 181 QTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGV 240

Query: 222 KKGDISSARIL--FEHMPIKDLISW-----------------NSMIDGYAKIGDLVAAQQ 262
           K  ++S   +L    H+ + D   W                  +++D YAK G++  A Q
Sbjct: 241 KLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQ 300

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F  M ERNV++WS  I G A +G  +E+L LF +M  +GV+P+ I+ +  +  C+ VG 
Sbjct: 301 VFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGL 360

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTAL-IDMYMKCGSLDEARRIFYSM 368
           ++ G+     M+        +    L +DMY + G L EA     SM
Sbjct: 361 VEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSM 407



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 118/262 (45%), Gaps = 36/262 (13%)

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML---CQGVRPDVISVMG 312
           +L  A +L N      +F+ + MI  Y++   P ++ + +  +L      + PD  +   
Sbjct: 58  NLDYANKLLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTF 117

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY-------------------- 352
            +  CAQ+ A   G  +H  + +    +D  VQT L+ MY                    
Sbjct: 118 LVRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPD 177

Query: 353 -----------MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
                       KCG +D AR++F  M +++ +++N MIAG    G   EAL  F  M+ 
Sbjct: 178 LVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQM 237

Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
           EG+  +++  + VL AC+H  +   G  +   ++R+  +   +   + LVD+ ++ G ++
Sbjct: 238 EGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERY-KVRMTVTLGTALVDMYAKCGNVD 296

Query: 462 QALNIVESMPMKPNLALWGTLL 483
           +A+ +   M  + N+  W + +
Sbjct: 297 RAMQVFWGMKER-NVYTWSSAI 317



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 121/260 (46%), Gaps = 13/260 (5%)

Query: 39  DLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALS 98
           D   EP  ++Q  M        ++D A ++F+++ + +    N MI GY Q    ++AL 
Sbjct: 171 DGAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALD 230

Query: 99  FYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYS 158
            +  M+ +G+ ++  +   VL AC  L  L  G  +H  V +      V +   L+ MY+
Sbjct: 231 VFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYA 290

Query: 159 KCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSI 214
           KCG++  A  VF G + +++ +W+  + G    G   ++ ++F++M     Q + I++  
Sbjct: 291 KCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFIS 350

Query: 215 MIDG------YRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
           ++ G        + +    S R ++   P   L  +  M+D Y + G L  A    N MP
Sbjct: 351 VLKGCSVVGLVEEGRKHFDSMRNVYGIGP--QLEHYGLMVDMYGRAGRLKEALNFINSMP 408

Query: 269 ER-NVFSWSIMIDGYAQHGN 287
            R +V +WS ++     + N
Sbjct: 409 MRPHVGAWSALLHACRMYKN 428


>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
          Length = 625

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 159/359 (44%), Positives = 229/359 (63%), Gaps = 6/359 (1%)

Query: 224 GDISSARILFEHMPIK--DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           G +S AR +F+       D  SWN+M+ GY K GDL AA+++F  MPER + SWS MID 
Sbjct: 165 GMLSDARRVFDTSGATSLDAFSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDA 224

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR---SRI 338
             + G   EAL +F +M+  G RPD + +   + ACA +GAL+ G+W+H F+K     R 
Sbjct: 225 CIRAGEFSEALRMFDQMMGNGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRS 284

Query: 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQ 398
             +++++TAL+DMY KCG +DEA  +F  +  ++V+ +N MI GL MNG G+ AL+ F +
Sbjct: 285 PDNVMLETALVDMYCKCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRR 344

Query: 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458
           M   G   ++  F+ VL AC+H+G   EG  IF+SM  H GIEP+ EHY CL DLL RAG
Sbjct: 345 MLDMGFVPNESTFVVVLCACTHTGRVDEGKEIFRSMCDH-GIEPRREHYGCLADLLGRAG 403

Query: 459 ELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSN 518
            LE+A  ++  MPM+P+ + WG L+ +C  H NV + E V + L+EL+ DD G YV+L N
Sbjct: 404 LLEEAEAVLLDMPMEPHASQWGALMSSCLMHNNVGVGERVGKKLIELEPDDGGRYVVLFN 463

Query: 519 IYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
           +YA  G+WE A  +RKMM +R  KKETG S IE +G + EF SG+    Q+ ++  +++
Sbjct: 464 LYAVNGLWEDAKALRKMMEERGAKKETGLSFIEWNGLVHEFRSGDTRHPQTRQIYALLE 522



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 141/316 (44%), Gaps = 49/316 (15%)

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE--GSEIKDLVSWNLVLRGFVECG 192
           HG+ +K G L    V N L+ +Y   G +  AR VF+  G+   D  SWN ++ G+ +CG
Sbjct: 139 HGQALKHGALAHPVVTNCLLKLYCALGMLSDARRVFDTSGATSLDAFSWNTMVSGYGKCG 198

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM------PIKDLIS--- 243
           ++  AREVF  MP++  +SWS MID    + G+ S A  +F+ M      P   ++S   
Sbjct: 199 DLEAAREVFVRMPERGLVSWSAMIDAC-IRAGEFSEALRMFDQMMGNGFRPDAVVLSSVL 257

Query: 244 -------------W--------------------NSMIDGYAKIGDLVAAQQLFNEMPER 270
                        W                     +++D Y K G +  A  +F+ +  +
Sbjct: 258 KACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVFDGVQSQ 317

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           +V  W+ MI G A +G+ K AL LFR ML  G  P+  + +  + AC   G +D GK I 
Sbjct: 318 DVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVLCACTHTGRVDEGKEIF 377

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMN--- 386
             M    I         L D+  + G L+EA  +   M  + +   +  +++   M+   
Sbjct: 378 RSMCDHGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPMEPHASQWGALMSSCLMHNNV 437

Query: 387 GFGEEALKCFAQMETE 402
           G GE   K   ++E +
Sbjct: 438 GVGERVGKKLIELEPD 453



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 99/243 (40%), Gaps = 21/243 (8%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A  +F ++ +      + MI    ++    +AL  +  M   G   D      VLK
Sbjct: 199 DLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMMGNGFRPDAVVLSSVLK 258

Query: 121 ACGVLMGLVEGTEIHGEVVKMGF---LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           AC  L  L  G  +H  +   G      +V +   L+ MY KCG M  A  VF+G + +D
Sbjct: 259 ACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVFDGVQSQD 318

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEM------PQKDAISWSIMIDGYRKKKGDISSARI 231
           +V WN ++ G    G   +A E+F  M      P +      +++       G +   + 
Sbjct: 319 VVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTF---VVVLCACTHTGRVDEGKE 375

Query: 232 LFEHM------PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQ 284
           +F  M      P ++   +  + D   + G L  A+ +  +MP E +   W  ++     
Sbjct: 376 IFRSMCDHGIEPRRE--HYGCLADLLGRAGLLEEAEAVLLDMPMEPHASQWGALMSSCLM 433

Query: 285 HGN 287
           H N
Sbjct: 434 HNN 436


>gi|51535392|dbj|BAD37262.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|51535558|dbj|BAD37476.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 908

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 178/539 (33%), Positives = 293/539 (54%), Gaps = 32/539 (5%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK-----GLLVDNYTYP 116
           MD+A RLF+++ Q N    NTM+ G+  +    KAL  +  M  K       +V  +T  
Sbjct: 148 MDEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFT-- 205

Query: 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE----- 171
                 G+L    E       V  M    D +  N LI  Y + G    A+ +F+     
Sbjct: 206 ----KNGMLHEAEELLTKRLSVTDMDKAVDAY--NTLIVAYGQAGRFSDAKRLFDMIPKG 259

Query: 172 ----------GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK 221
                     G E +++VSWN ++  +++ G++  AR +F+EMP KD +SW+ MI GY  
Sbjct: 260 QYQHNMLKRKGFE-RNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGY-T 317

Query: 222 KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           +  D+  +  LF  MP  D +SWN +I G+ + G+   A+  F+ MPER   SW+ MI G
Sbjct: 318 QASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISG 377

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
           Y ++GN   ++ LF +ML  G  PD  +    ++ACA +  L LG  IH  +++S +  D
Sbjct: 378 YEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQLVEKSFVP-D 436

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSM-TKKNVISYNVMIAGLGMNGFGEEALKCFAQME 400
             +  ALI MY +CG+L++A  IF  M TKK+++S+N +I     +G   +AL+ F +M 
Sbjct: 437 TAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMR 496

Query: 401 TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460
              +    + F+ +L AC ++GL +EG  +F +M    GI  ++EHY+ LV+L+ R G+L
Sbjct: 497 RAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQL 556

Query: 461 EQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520
           + AL ++ SMPM P+ ++WG  L AC   +N  LA++  + L  +  D    YVL+ N++
Sbjct: 557 DDALEVINSMPMAPDRSVWGAFLGACTAKKNEPLAQMAAKELSTINPDSSAPYVLIHNLH 616

Query: 521 ADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSF 579
           A  G W  A  +R+ M ++ I K+ G S I+++G +  F+SG+ +   ++E+  V++ +
Sbjct: 617 AHEGKWGSAAVVREEMERQGIYKQPGYSWIDLEGKMHVFISGDTWHPNAQEIFSVLEDW 675



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 115/399 (28%), Positives = 177/399 (44%), Gaps = 90/399 (22%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           DV   N L+G Y++ G M  AR +F+    ++  SWN ++ GF   G++ KA +VFD MP
Sbjct: 131 DVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMP 190

Query: 206 QKDAISWSIMIDGYRK-----------------------------------KKGDISSAR 230
            KD+ S S M+ G+ K                                   + G  S A+
Sbjct: 191 AKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAK 250

Query: 231 ILFEHMPI--------------KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
            LF+ +P               ++++SWNSM+  Y K GD+ +A+ LFNEMP++++ SW+
Sbjct: 251 RLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWN 310

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS 336
            MI GY Q  + KE+  LF EM      PD +S                  W        
Sbjct: 311 TMISGYTQASDMKESEKLFWEM----PDPDTVS------------------W-------- 340

Query: 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF 396
               ++I+Q      +M+ G  + AR  F  M ++  IS+N MI+G   NG    ++K F
Sbjct: 341 ----NLIIQG-----FMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLF 391

Query: 397 AQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456
           ++M   G   D   F  VL AC+   +   G +I Q +++     P     + L+ + SR
Sbjct: 392 SKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQLVEK--SFVPDTAISNALITMYSR 449

Query: 457 AGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLA 495
            G L  A  I + M  K +L  W  L+    +H   T A
Sbjct: 450 CGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKA 488



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 168/345 (48%), Gaps = 37/345 (10%)

Query: 159 KCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDG 218
           + G  G AR +F+    + +V+WN +L G     +   ARE FD MP +DA+SW+ ++  
Sbjct: 48  RAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPVRDAVSWNTLLAA 107

Query: 219 YR--KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
           Y        +++AR LF+ MP +D+++WN+++  YA+ G +  A++LF+EMP+RN  SW+
Sbjct: 108 YSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWN 167

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS 336
            M+ G+   G   +AL +F  M  +    D  S+   +S   + G L   +   +  KR 
Sbjct: 168 TMVTGFFAAGQVVKALDVFDAMPAK----DSASLSTMVSGFTKNGMLHEAE--ELLTKRL 221

Query: 337 RIT-MDMIVQ--TALIDMYMKCGSLDEARRIF---------YSMTK-----KNVISYNVM 379
            +T MD  V     LI  Y + G   +A+R+F         ++M K     +NV+S+N M
Sbjct: 222 SVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSM 281

Query: 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA-CSHSGLATEGYRIFQSMKRHC 438
           +      G    A   F +M     P  DL+    +I+  + +    E  ++F  M    
Sbjct: 282 MICYIKAGDVCSARALFNEM-----PDKDLVSWNTMISGYTQASDMKESEKLFWEMP--- 333

Query: 439 GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             +P    ++ ++    + GE E A    + MP +  ++ W T++
Sbjct: 334 --DPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTIS-WNTMI 375



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 111/248 (44%), Gaps = 41/248 (16%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV---------- 110
           +M ++E+LF ++  P+T   N +I+G+ Q    + A  F+  M  +G +           
Sbjct: 321 DMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEK 380

Query: 111 ---------------------DNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
                                D +T+  VL AC  +  L  G +IH ++V+  F+ D  +
Sbjct: 381 NGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIH-QLVEKSFVPDTAI 439

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEI-KDLVSWNLVLRGFVECGEMGKAREVFDEMPQKD 208
            N LI MYS+CG +  A ++F+     KDLVSWN ++  +   G   KA ++F EM +  
Sbjct: 440 SNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAK 499

Query: 209 AISWSIMIDGYRK---KKGDISSARILFEHMP-----IKDLISWNSMIDGYAKIGDLVAA 260
            +   I            G +S  R++F+ M      +  +  + ++++   + G L  A
Sbjct: 500 VMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDA 559

Query: 261 QQLFNEMP 268
            ++ N MP
Sbjct: 560 LEVINSMP 567


>gi|297599966|ref|NP_001048246.2| Os02g0769900 [Oryza sativa Japonica Group]
 gi|46805413|dbj|BAD16915.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255671273|dbj|BAF10160.2| Os02g0769900 [Oryza sativa Japonica Group]
          Length = 438

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 146/341 (42%), Positives = 221/341 (64%)

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           LF+ MP++  +++N++I G  + G + AA ++F+ MP  +  SW+ +IDG  ++G   EA
Sbjct: 72  LFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEA 131

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           +  FR ML  GV PD ++++  ISACA+VGAL LG W+H  + R  +  ++ +  +LIDM
Sbjct: 132 IDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDM 191

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y +CG ++ AR++F  M K+ V+S+N MI G   NG   +A++ F  M  EG   D + F
Sbjct: 192 YARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTF 251

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
            GVL ACSH GL  EG R +  M+   GI  ++EHY C+VDLL R+G+LE+A+ +V +MP
Sbjct: 252 TGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRVVTTMP 311

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           M+PN  + G LL  CR H +V +AE +++ L+EL       YVLLSNIYA  G W+ A +
Sbjct: 312 MRPNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKWDGAGK 371

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           +R +M+ R ++K  G S +EIDG++ EFVSG+    Q+EE+
Sbjct: 372 VRSLMKARGLRKRPGYSAVEIDGDVHEFVSGDRSHPQAEEI 412



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 138/297 (46%), Gaps = 47/297 (15%)

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMY--SKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
           +H  V+K+ F   + +   L+  Y  S+  H+  A  +F+   ++  V++N V+ G +  
Sbjct: 38  VHARVLKL-FPSHLLLSTCLVRFYFASRLPHL--ALQLFDAMPVRSAVTYNTVISGLMRN 94

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI----KDLIS---- 243
           G +  A EVFD MP  D +SW+ +IDG   K G    A   F  M +     D ++    
Sbjct: 95  GLVAAAFEVFDGMPAPDKVSWTALIDGC-VKNGRHDEAIDCFRAMLLDGVEPDYVTLIAV 153

Query: 244 --------------W-----------------NSMIDGYAKIGDLVAAQQLFNEMPERNV 272
                         W                 NS+ID YA+ G +  A+Q+F+ M +R V
Sbjct: 154 ISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMRKRTV 213

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHV 331
            SW+ MI G+A +G   +A+  F  M  +G +PD ++  G ++AC+  G  D G ++  +
Sbjct: 214 VSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDL 273

Query: 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG 387
                 I   M     ++D+  + G L+EA R+  +M  + N +    ++AG  M+G
Sbjct: 274 MRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRVVTTMPMRPNEVVLGALLAGCRMHG 330



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 129/300 (43%), Gaps = 19/300 (6%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           L   LV     S+     LQ+   +     +T    +S L+      N L +  A  +F+
Sbjct: 52  LSTCLVRFYFASRLPHLALQLFDAMPVRSAVTYNTVISGLMR-----NGL-VAAAFEVFD 105

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
            +  P+      +I G  ++    +A+  +  M   G+  D  T   V+ AC  +  L  
Sbjct: 106 GMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGL 165

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G  +H  VV+ G   +V + N LI MY++CG +  AR VF G   + +VSWN ++ GF  
Sbjct: 166 GMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAA 225

Query: 191 CGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILF------EHMPIKD 240
            G    A E F+ M ++    DA++++ ++       G ++   + +      E+     
Sbjct: 226 NGRCADAVEHFEAMRREGFKPDAVTFTGVLTAC--SHGGLTDEGLRYYDLMRAEYGIAAR 283

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQHGNPKEALYLFREML 299
           +  +  ++D   + G L  A ++   MP R N      ++ G   HG+   A  L + +L
Sbjct: 284 MEHYGCVVDLLGRSGQLEEAMRVVTTMPMRPNEVVLGALLAGCRMHGDVGMAEQLMQHLL 343


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 182/512 (35%), Positives = 282/512 (55%), Gaps = 22/512 (4%)

Query: 65   AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC-- 122
            AE+ F    + +    NTMI  Y Q++   +A+  + ++ R GL  D +T   VL+AC  
Sbjct: 948  AEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACST 1007

Query: 123  ---GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
               G    L  G+++H   +K G + D FV   LI +YSK G M  A  +  G    DL 
Sbjct: 1008 GDEGEYFTL--GSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLA 1065

Query: 180  SWNLVLRGFVECGEMGKAREVF----------DEMPQKDAISWS-IMIDGYRKKKGDISS 228
            SWN ++ G+++  +  KA E F          DE+    AI  S  +I+  + K+    +
Sbjct: 1066 SWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYA 1125

Query: 229  ARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNP 288
             ++ F +    DL   + ++D Y K GD+  A +LF E+   +  +W+ MI GY ++G+ 
Sbjct: 1126 IKLGFNN----DLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDE 1181

Query: 289  KEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTAL 348
              AL ++  M   GV+PD  +    I A + + AL+ GK IH  + +   ++D  V T+L
Sbjct: 1182 DHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSL 1241

Query: 349  IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD 408
            +DMY KCGS+ +A R+F  M  + V+ +N M+ GL  +G  +EAL  F  M++ GI  D 
Sbjct: 1242 VDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDK 1301

Query: 409  LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468
            + F+GVL ACSHSGL +E Y+ F +M +  GI P++EHYSCLVD L RAG +++A N++ 
Sbjct: 1302 VTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIA 1361

Query: 469  SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528
            SMP K + +++  LL ACR   +   A+ V + L+ L   D   YVLLSNIYA +  W+ 
Sbjct: 1362 SMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDD 1421

Query: 529  ALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
                R MM+ + +KK+ G S I++   +  FV
Sbjct: 1422 VTDARNMMKLKNVKKDPGFSWIDVKNKVHLFV 1453



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 178/365 (48%), Gaps = 13/365 (3%)

Query: 40   LITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSF 99
            +I + F +S  L+ L S     MD+AE L +  Y  +    N ++ GY +S+  +KAL  
Sbjct: 1029 IINDSF-VSTALIDLYSKGG-KMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEH 1086

Query: 100  YVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSK 159
            +  M   G+ +D  T    +KA G L+ L +G +I    +K+GF  D++V +G++ MY K
Sbjct: 1087 FSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIK 1146

Query: 160  CGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIM 215
            CG M  A  +F      D V+W  ++ G++E G+   A  V+  M     Q D  +++ +
Sbjct: 1147 CGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATL 1206

Query: 216  IDGYR----KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271
            I         ++G    A ++     +   +   S++D Y K G +  A ++F +M  R 
Sbjct: 1207 IKASSCLTALEQGKQIHANVVKLDYSLDHFVG-TSLVDMYCKCGSVQDAYRVFRKMDVRK 1265

Query: 272  VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIH 330
            V  W+ M+ G AQHG+  EAL LFR M   G++PD ++ +G +SAC+  G      K+  
Sbjct: 1266 VVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFD 1325

Query: 331  VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS-YNVMIAGLGMNGFG 389
               K   IT ++   + L+D   + G + EA  +  SM  K   S Y  ++      G  
Sbjct: 1326 AMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDA 1385

Query: 390  EEALK 394
            E A +
Sbjct: 1386 ETAKR 1390



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 119/520 (22%), Positives = 225/520 (43%), Gaps = 61/520 (11%)

Query: 64   QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            QA  LF+++ + +  + N M++ Y ++S   +AL F+    R G   D      V+   G
Sbjct: 770  QARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIG--G 827

Query: 124  VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            V   +    + H E VK                         A  +F   +  ++ +WN 
Sbjct: 828  VNSDVSNNRKRHAEQVK-----------------------AYAMKMFPFDQGSNIFAWNK 864

Query: 184  VLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKG-----DISSARILFE 234
             L  F+  G++  A + F  + +     D+++  I++              I +  I   
Sbjct: 865  KLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSS 924

Query: 235  HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
              P+  +   NS+++ Y+K G + AA++ F   PE ++ SW+ MI  YAQ+    EA+  
Sbjct: 925  FAPVVPVS--NSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICT 982

Query: 295  FREMLCQGVRPDVISVMGAISACA---QVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
            FR++L  G++PD  ++   + AC+   +     LG  +HV+  +  I  D  V TALID+
Sbjct: 983  FRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDL 1042

Query: 352  YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
            Y K G +DEA  + +     ++ S+N ++ G   +    +AL+ F+ M   GIP D+ I 
Sbjct: 1043 YSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDE-IT 1101

Query: 412  LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
            L   I  S   +  +  +  Q+     G    L   S ++D+  + G++  AL +   + 
Sbjct: 1102 LATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEIS 1161

Query: 472  MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL----LSNIYADAGMWE 527
             +P+   W T+                + G +E   +D  L V     +S +  D   + 
Sbjct: 1162 -RPDEVAWTTM----------------ISGYIENGDEDHALSVYHLMRVSGVQPDEYTFA 1204

Query: 528  HALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDV 567
              ++    +   +  K+   +V+++D ++  FV   + D+
Sbjct: 1205 TLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDM 1244



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 88/200 (44%), Gaps = 36/200 (18%)

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G   H  +V  G L D ++ N LI MYSKCG +  AR VF+ S  +DLV+WN +L  + +
Sbjct: 630 GKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQ 689

Query: 191 CGE------------MGKAREVFDEMPQ------------KDAISWSIMIDGYRKKKGDI 226
             +             G  RE    + +               +  S  + GY       
Sbjct: 690 FADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGY------- 742

Query: 227 SSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
            + +I FE     DL    ++++ Y K G +  A+ LF++MPER+   W++M+  Y ++ 
Sbjct: 743 -AVKIGFE----LDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENS 797

Query: 287 NPKEALYLFREMLCQGVRPD 306
              EAL  F      G  PD
Sbjct: 798 FQDEALRFFSAFHRSGFFPD 817



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 99/192 (51%), Gaps = 8/192 (4%)

Query: 222 KKGDISSARILFE-HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMID 280
           K G  + ARI+    +P + L   N++I  Y+K G L +A+Q+F++  +R++ +W+ ++ 
Sbjct: 628 KLGKRAHARIVTSGDLPDRYLT--NNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILA 685

Query: 281 GYAQ-----HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
            YAQ     + N  E   LF  +   G     +++   +  C   G + + + +H +  +
Sbjct: 686 AYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVK 745

Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
               +D+ V  AL+++Y K G + +AR +F  M +++ + +NVM+     N F +EAL+ 
Sbjct: 746 IGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRF 805

Query: 396 FAQMETEGIPKD 407
           F+     G   D
Sbjct: 806 FSAFHRSGFFPD 817



 Score = 45.8 bits (107), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 21/175 (12%)

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
           L LGK  H  +  S    D  +   LI MY KCGSL  AR++F   + ++++++N ++A 
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 383 LGMNGFGE-------EALKCFAQMETEGIPKDDLIFLGVLIACSHSGL-----ATEGYRI 430
                F +       E  + F  +   G     L    +L  C  SG         GY +
Sbjct: 687 YAQ--FADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAV 744

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
                   G E  L     LV++  + G + QA  + + MP + +  LW  +L A
Sbjct: 745 ------KIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPER-DAVLWNVMLKA 792


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 182/537 (33%), Positives = 297/537 (55%), Gaps = 23/537 (4%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A ++F+ + + N    + ++ G+  + + + +LS +  M R+G+  + +T+   LKACG+
Sbjct: 60  AYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGL 119

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L  L +G +IHG  +K+GF   V V N L+ MYSKCG +  A  VF     + L+SWN +
Sbjct: 120 LNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAM 179

Query: 185 LRGFVECGEMGKAREVFDEMPQKD---------------AISWSIMIDGYRKKKGDISSA 229
           + GFV  G   KA + F  M + +               A S + MI   ++  G +  +
Sbjct: 180 IAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRS 239

Query: 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
                H P    I+  S++D Y K G L +A++ F+++ E+ + SWS +I GYAQ G   
Sbjct: 240 GF---HCPSSATIT-GSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFV 295

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           EA+ LF+ +     + D  ++   I   A    L  GK +     +    ++  V  +++
Sbjct: 296 EAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVV 355

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           DMY+KCG +DEA + F  M  K+VIS+ V+I G G +G G+++++ F +M    I  D++
Sbjct: 356 DMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEV 415

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            +L VL ACSHSG+  EG  +F  +    GI+P++EHY+C+VDLL RAG L++A +++++
Sbjct: 416 CYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDT 475

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           MP+KPN+ +W TLL  CR H ++ L + V + L+ + A +   YV++SN+Y  AG W   
Sbjct: 476 MPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQ 535

Query: 530 LRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586
              R++   + +KKE G S +EI+  +  F SGE     S  L  VIQ  +K    R
Sbjct: 536 GNARELGNIKGLKKEAGMSWVEIEREVHFFRSGE----DSHPLTPVIQETLKEAERR 588



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/314 (31%), Positives = 161/314 (51%), Gaps = 15/314 (4%)

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           +LI+ N +ID Y K  + + A ++F+ MPERNV SWS ++ G+  +G+ K +L LF EM 
Sbjct: 40  NLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMG 99

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
            QG+ P+  +    + AC  + AL+ G  IH F  +    M + V  +L+DMY KCG ++
Sbjct: 100 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRIN 159

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK--DDLIFLGVLIA 417
           EA ++F  +  +++IS+N MIAG    G+G +AL  F  M+   I +  D+     +L A
Sbjct: 160 EAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKA 219

Query: 418 CSHSGLATEGYRIFQSMKR---HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           CS +G+   G +I   + R   HC     +     LVDL  + G L  A    + +  K 
Sbjct: 220 CSSTGMIYAGKQIHGFLVRSGFHCPSSATIT--GSLVDLYVKCGYLFSARKAFDQIKEKT 277

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKA--DDCGLYVLLSNIYADAGMWEHALRI 532
            ++ W +L+L          A  + + L EL +  D   L  ++  ++AD  +    LR 
Sbjct: 278 MIS-WSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSII-GVFADFAL----LRQ 331

Query: 533 RKMMRKRKIKKETG 546
            K M+   +K  +G
Sbjct: 332 GKQMQALAVKLPSG 345



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 170/336 (50%), Gaps = 19/336 (5%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGL--LVDNYTYPFVL 119
           +++AE++F +I   +    N MI G+  +    KAL  +  M+   +    D +T   +L
Sbjct: 158 INEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLL 217

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLC--DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           KAC     +  G +IHG +V+ GF C     +   L+ +Y KCG++  AR  F+  + K 
Sbjct: 218 KACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKT 277

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGY------RKKKGDIS 227
           ++SW+ ++ G+ + GE  +A  +F  +     Q D+ + S +I  +      R+ K   +
Sbjct: 278 MISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQA 337

Query: 228 SARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN 287
            A  L   +    L   NS++D Y K G +  A++ F EM  ++V SW+++I GY +HG 
Sbjct: 338 LAVKLPSGLETSVL---NSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGL 394

Query: 288 PKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA 347
            K+++ +F EML   + PD +  +  +SAC+  G +  G+ +   +  +      +   A
Sbjct: 395 GKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYA 454

Query: 348 -LIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIA 381
            ++D+  + G L EA+ +  +M  K NV  +  +++
Sbjct: 455 CVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLS 490



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 178/376 (47%), Gaps = 23/376 (6%)

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
           +G ++H  ++K G   ++   N LI MY KC     A  VF+    +++VSW+ ++ G V
Sbjct: 24  QGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHV 83

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS-----------ARILFEHMPI 238
             G++  +  +F EM ++             K  G +++            +I FE M  
Sbjct: 84  LNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMM-- 141

Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
             +   NS++D Y+K G +  A+++F  + +R++ SW+ MI G+   G   +AL  F  M
Sbjct: 142 --VEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMM 199

Query: 299 LCQGV--RPDVISVMGAISACAQVGALDLGKWIHVFMKRS--RITMDMIVQTALIDMYMK 354
               +  RPD  ++   + AC+  G +  GK IH F+ RS         +  +L+D+Y+K
Sbjct: 200 QEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVK 259

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG L  AR+ F  + +K +IS++ +I G    G   EA+  F +++      D      +
Sbjct: 260 CGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSI 319

Query: 415 LIACSHSGLATEGYRIFQ-SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           +   +   L  +G ++   ++K   G+E  +   + +VD+  + G +++A      M +K
Sbjct: 320 IGVFADFALLRQGKQMQALAVKLPSGLETSV--LNSVVDMYLKCGLVDEAEKCFAEMQLK 377

Query: 474 PNLALWGTLLLACRNH 489
             ++ W  ++     H
Sbjct: 378 DVIS-WTVVITGYGKH 392



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 93/180 (51%), Gaps = 5/180 (2%)

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
           R +++S++     C + G  D G  +H ++ +S   +++I    LIDMY KC     A +
Sbjct: 6   RQNLVSIL---RVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYK 62

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           +F SM ++NV+S++ +++G  +NG  + +L  F++M  +GI  ++  F   L AC     
Sbjct: 63  VFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNA 122

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             +G +I        G E  +E  + LVD+ S+ G + +A  +   + +  +L  W  ++
Sbjct: 123 LEKGLQI-HGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRI-VDRSLISWNAMI 180


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 174/550 (31%), Positives = 300/550 (54%), Gaps = 10/550 (1%)

Query: 43   EPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVN 102
            +P+  + LL       ++  + A+++F+Q+      + N MI  +  +     AL  Y  
Sbjct: 683  DPYVCTSLLTMYAKSGSV--EDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNK 740

Query: 103  MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
            MK     VD++T   +L  C V+     G  +H EV+K     +V + + L+ MY KCG 
Sbjct: 741  MKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGS 800

Query: 163  MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK 222
               A SVF   + +D+V+W  ++ GF +      A ++F  M ++   + S ++      
Sbjct: 801  TEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISA 860

Query: 223  KGDISSARI--LFEHMPIK-----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
               + +  +  L     IK     D+    S++D Y+K G   +A+ +F+ MP +N+ +W
Sbjct: 861  GLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAW 920

Query: 276  SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
            + MI  Y+ +G P+ ++ L  ++L  G   D +S+   + A + V AL  GK +H +  R
Sbjct: 921  NSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIR 980

Query: 336  SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
             +I  D+ V+ ALIDMY+KCG L  A+ IF +M ++N++++N MIAG G +G  EEA++ 
Sbjct: 981  LQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRL 1040

Query: 396  FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
            F +M+      D++ FL ++ +CSHSG+  EG  +FQ M+   G+EP++EHY+ +VDLL 
Sbjct: 1041 FKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLG 1100

Query: 456  RAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515
            RAG L+ A + +  MP+  + ++W  LL ACR H+N+ L E+V + L++++      YV 
Sbjct: 1101 RAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVP 1160

Query: 516  LSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELV 575
            L N+Y +  MW+ A  +R  M+ R +KK  G S IE+   +  F SG+    +  E+   
Sbjct: 1161 LLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIEVKNRVDVFFSGDSSSTRRIEIYKT 1220

Query: 576  IQSFVKTTIE 585
            + S +K+ +E
Sbjct: 1221 LSS-LKSNME 1229



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 137/505 (27%), Positives = 250/505 (49%), Gaps = 40/505 (7%)

Query: 3   TLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNM 62
            L  AKF+  + L +   +S    H   I A + T  L ++P+  + L+        L  
Sbjct: 436 ALTTAKFTFPSLLKTCASLS-NLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLG- 493

Query: 63  DQAERLFNQIYQ-----PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF 117
             A ++F+++ +     P+  + N +I GY +  + ++ L+ +  M+  G+  D Y+   
Sbjct: 494 -SALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQELGIRPDGYSLSI 552

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK- 176
           VL  C  L   + G +IHG +++  F  D ++   LIGMYS C     A S+F   E + 
Sbjct: 553 VLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRS 612

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQKD-------------AISWSIMIDGYRKKK 223
           ++V+WN+++ GFVE G   K+ E++     ++             A S   ++D  R+  
Sbjct: 613 NIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVH 672

Query: 224 GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
            D+   ++ F+  P        S++  YAK G +  A+++F+++ ++ V   + MI  + 
Sbjct: 673 CDV--IKMNFQDDP----YVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFI 726

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
            +G   +AL L+ +M       D  ++   +S C+ VG+ D G+ +H  + +  +  ++ 
Sbjct: 727 GNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVA 786

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           +Q+AL+ MY KCGS ++A  +FY+M +++V+++  MIAG   N   ++AL  F  ME EG
Sbjct: 787 IQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEG 846

Query: 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQ-----SMKRHCGIEPKLEHYSCLVDLLSRAG 458
           +  D  +   V+ A    GL  E   +       ++KR  G+E  +     LVD+ S+ G
Sbjct: 847 VKADSDVMTSVISA----GLGLENVELGHLIHGFAIKR--GLESDVFVACSLVDMYSKFG 900

Query: 459 ELEQALNIVESMPMKPNLALWGTLL 483
             E A  +  SMP K NL  W +++
Sbjct: 901 FAESAEMVFSSMPNK-NLVAWNSMI 924



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 115/432 (26%), Positives = 197/432 (45%), Gaps = 38/432 (8%)

Query: 84  IRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGF 143
           I+   Q     +AL  +       L    +T+P +LK C  L  L  G  IH  +V MG 
Sbjct: 413 IKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGL 472

Query: 144 LCDVFVVNGLIGMYSKCGHMGCARSVFEG-SEIKD----LVSWNLVLRGFVECGEMGKAR 198
             D ++   LI MY KCG +G A  VF+  SE +D    +  WN V+ G+ + G   +  
Sbjct: 473 QSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGL 532

Query: 199 EVFDEMPQ----KDAISWSIMID---------GYRKKKGDISSARILFEHMPIKDLISWN 245
             F  M +     D  S SI++            R+  G I   R +FE  P  +     
Sbjct: 533 AQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYI--IRNMFEGDPYLE----T 586

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           ++I  Y+     + A  LF ++  R N+ +W++MI G+ ++G  +++L L+     +  +
Sbjct: 587 ALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCK 646

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
               S  GA +AC+    LD G+ +H  + +     D  V T+L+ MY K GS+++A+++
Sbjct: 647 LVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKV 706

Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
           F  +  K V   N MI+    NG   +AL  + +M+    P D      +L  CS  G  
Sbjct: 707 FDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSY 766

Query: 425 TEGYRIF-----QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
             G  +      +SM+ +  I+      S L+ +  + G  E A ++  +M  + ++  W
Sbjct: 767 DFGRTVHAEVIKRSMQSNVAIQ------SALLTMYYKCGSTEDADSVFYTMKER-DVVAW 819

Query: 480 GTLLLA-CRNHQ 490
           G+++   C+N +
Sbjct: 820 GSMIAGFCQNRR 831


>gi|449440231|ref|XP_004137888.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Cucumis sativus]
 gi|449521725|ref|XP_004167880.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Cucumis sativus]
          Length = 521

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 191/515 (37%), Positives = 278/515 (53%), Gaps = 49/515 (9%)

Query: 51  LMSLTSPNTL-NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL 109
           L++ +S + L ++  A  LF +    ++++ NTMIR Y+ +  P KAL  Y  M+R  + 
Sbjct: 37  LIAFSSLSPLGSLPHACALFQETSMDDSFICNTMIRAYSNTVFPLKALLIYNRMQRMDVD 96

Query: 110 VDNYTYPFVLKACGVLMGLVE--------------GTEIHGEVVKMGFLCDVFVVNGLIG 155
            D++TY FVL+AC   +   E              G+EIH  ++K+GF  D  V N L+ 
Sbjct: 97  SDHFTYNFVLRACARAIKCTEMDDQCFGHHIISRKGSEIHARILKLGFDQDHHVQNSLLL 156

Query: 156 MYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIM 215
           +YS  G                       L GF        AR +F+EM  K A+SW+IM
Sbjct: 157 VYSGSG-----------------------LVGF--------ARLIFNEMTVKTAVSWNIM 185

Query: 216 IDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
           +  Y +   D  SA +L E MP  + +SWN+++  Y ++ +LVAA+++F EMPER+V SW
Sbjct: 186 MSAYNRVH-DYKSADVLLESMPQTNAVSWNTLLARYIRLNNLVAARKVFEEMPERDVVSW 244

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
           + +I GY    + K AL LF  M    +R   ++ +  + ACA++GAL++GK IH  +K 
Sbjct: 245 NSIISGYVNVKDYKGALDLFHSMKQWNIRATEVTFISILGACAELGALEIGKKIHDSLKE 304

Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
               ++  +  A++DMY KCG L  A  +F  M  K V  +N MI GL ++G  E AL+ 
Sbjct: 305 KHYRIEGYLGNAIVDMYAKCGELGLALEVFNEMEMKPVSCWNAMIMGLAVHGHCERALEM 364

Query: 396 FAQMETE-GIPKDDLI-FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
           F  M+ E G  K + I F+ +LIACSH GL  EG   F  M     I P L+HY C++DL
Sbjct: 365 FDSMKAEDGDHKPNRITFIALLIACSHKGLLAEGRHFFSLMVTKYKIMPDLKHYGCMIDL 424

Query: 454 LSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLY 513
           LSR G LE+A  ++++ P      LW TLL  CR H++V L E     L EL+    G Y
Sbjct: 425 LSRWGFLEEAYVMIKTCPFSSCSVLWRTLLGGCRLHRHVELGEESFRKLAELEPGKDGDY 484

Query: 514 VLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRS 548
           VLLSNIYA+   W+   R+RK M    + K+ G S
Sbjct: 485 VLLSNIYAEEERWDDVERLRKEMINYGVCKKAGSS 519


>gi|297605437|ref|NP_001057211.2| Os06g0228900 [Oryza sativa Japonica Group]
 gi|255676854|dbj|BAF19125.2| Os06g0228900 [Oryza sativa Japonica Group]
          Length = 695

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 178/539 (33%), Positives = 293/539 (54%), Gaps = 32/539 (5%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK-----GLLVDNYTYP 116
           MD+A RLF+++ Q N    NTM+ G+  +    KAL  +  M  K       +V  +T  
Sbjct: 112 MDEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFT-- 169

Query: 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE----- 171
                 G+L    E       V  M    D +  N LI  Y + G    A+ +F+     
Sbjct: 170 ----KNGMLHEAEELLTKRLSVTDMDKAVDAY--NTLIVAYGQAGRFSDAKRLFDMIPKG 223

Query: 172 ----------GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK 221
                     G E +++VSWN ++  +++ G++  AR +F+EMP KD +SW+ MI GY  
Sbjct: 224 QYQHNMLKRKGFE-RNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGY-T 281

Query: 222 KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           +  D+  +  LF  MP  D +SWN +I G+ + G+   A+  F+ MPER   SW+ MI G
Sbjct: 282 QASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISG 341

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
           Y ++GN   ++ LF +ML  G  PD  +    ++ACA +  L LG  IH  +++S +  D
Sbjct: 342 YEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQLVEKSFVP-D 400

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSM-TKKNVISYNVMIAGLGMNGFGEEALKCFAQME 400
             +  ALI MY +CG+L++A  IF  M TKK+++S+N +I     +G   +AL+ F +M 
Sbjct: 401 TAISNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMR 460

Query: 401 TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460
              +    + F+ +L AC ++GL +EG  +F +M    GI  ++EHY+ LV+L+ R G+L
Sbjct: 461 RAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQL 520

Query: 461 EQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520
           + AL ++ SMPM P+ ++WG  L AC   +N  LA++  + L  +  D    YVL+ N++
Sbjct: 521 DDALEVINSMPMAPDRSVWGAFLGACTAKKNEPLAQMAAKELSTINPDSSAPYVLIHNLH 580

Query: 521 ADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSF 579
           A  G W  A  +R+ M ++ I K+ G S I+++G +  F+SG+ +   ++E+  V++ +
Sbjct: 581 AHEGKWGSAAVVREEMERQGIYKQPGYSWIDLEGKMHVFISGDTWHPNAQEIFSVLEDW 639



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 115/399 (28%), Positives = 177/399 (44%), Gaps = 90/399 (22%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           DV   N L+G Y++ G M  AR +F+    ++  SWN ++ GF   G++ KA +VFD MP
Sbjct: 95  DVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMP 154

Query: 206 QKDAISWSIMIDGYRK-----------------------------------KKGDISSAR 230
            KD+ S S M+ G+ K                                   + G  S A+
Sbjct: 155 AKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAK 214

Query: 231 ILFEHMPI--------------KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
            LF+ +P               ++++SWNSM+  Y K GD+ +A+ LFNEMP++++ SW+
Sbjct: 215 RLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWN 274

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS 336
            MI GY Q  + KE+  LF EM      PD +S                  W        
Sbjct: 275 TMISGYTQASDMKESEKLFWEM----PDPDTVS------------------W-------- 304

Query: 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF 396
               ++I+Q      +M+ G  + AR  F  M ++  IS+N MI+G   NG    ++K F
Sbjct: 305 ----NLIIQG-----FMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLF 355

Query: 397 AQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456
           ++M   G   D   F  VL AC+   +   G +I Q +++     P     + L+ + SR
Sbjct: 356 SKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQLVEK--SFVPDTAISNALITMYSR 413

Query: 457 AGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLA 495
            G L  A  I + M  K +L  W  L+    +H   T A
Sbjct: 414 CGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKA 452



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 169/345 (48%), Gaps = 37/345 (10%)

Query: 159 KCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDG 218
           + G  G AR +F+    + +V+WN +L G     +   ARE FD MP +DA+SW+ ++  
Sbjct: 12  RAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPVRDAVSWNTLLAA 71

Query: 219 YR--KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
           Y        +++AR LF+ MP +D+++WN+++  YA+ G +  A++LF+EMP+RN  SW+
Sbjct: 72  YSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWN 131

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS 336
            M+ G+   G   +AL +F  M  +    D  S+   +S   + G L   +   +  KR 
Sbjct: 132 TMVTGFFAAGQVVKALDVFDAMPAK----DSASLSTMVSGFTKNGMLHEAE--ELLTKRL 185

Query: 337 RIT-MDMIVQ--TALIDMYMKCGSLDEARRIF---------YSMTK-----KNVISYNVM 379
            +T MD  V     LI  Y + G   +A+R+F         ++M K     +NV+S+N M
Sbjct: 186 SVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSM 245

Query: 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA-CSHSGLATEGYRIFQSMKRHC 438
                M  + +    C A+     +P  DL+    +I+  + +    E  ++F  M    
Sbjct: 246 -----MICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMP--- 297

Query: 439 GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             +P    ++ ++    + GE E A    + MP +  ++ W T++
Sbjct: 298 --DPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTIS-WNTMI 339



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 116/256 (45%), Gaps = 44/256 (17%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV---------- 110
           +M ++E+LF ++  P+T   N +I+G+ Q    + A  F+  M  +G +           
Sbjct: 285 DMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEK 344

Query: 111 ---------------------DNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
                                D +T+  VL AC  +  L  G +IH ++V+  F+ D  +
Sbjct: 345 NGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIH-QLVEKSFVPDTAI 403

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEI-KDLVSWNLVLRGFVECGEMGKAREVFDEMPQKD 208
            N LI MYS+CG +  A ++F+     KDLVSWN ++  +   G   KA ++F EM +  
Sbjct: 404 SNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAK 463

Query: 209 AISWSIMIDGYRK---KKGDISSARILFEHMP-----IKDLISWNSMIDGYAKIGDLVAA 260
            +   I            G +S  R++F+ M      +  +  + ++++   + G L  A
Sbjct: 464 VMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDA 523

Query: 261 QQLFNEM---PERNVF 273
            ++ N M   P+R+V+
Sbjct: 524 LEVINSMPMAPDRSVW 539


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 182/512 (35%), Positives = 282/512 (55%), Gaps = 22/512 (4%)

Query: 65   AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC-- 122
            AE+ F    + +    NTMI  Y Q++   +A+  + ++ R GL  D +T   VL+AC  
Sbjct: 948  AEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACST 1007

Query: 123  ---GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
               G    L  G+++H   +K G + D FV   LI +YSK G M  A  +  G    DL 
Sbjct: 1008 GDEGEYFTL--GSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLA 1065

Query: 180  SWNLVLRGFVECGEMGKAREVF----------DEMPQKDAISWS-IMIDGYRKKKGDISS 228
            SWN ++ G+++  +  KA E F          DE+    AI  S  +I+  + K+    +
Sbjct: 1066 SWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYA 1125

Query: 229  ARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNP 288
             ++ F +    DL   + ++D Y K GD+  A +LF E+   +  +W+ MI GY ++G+ 
Sbjct: 1126 IKLGFNN----DLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDE 1181

Query: 289  KEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTAL 348
              AL ++  M   GV+PD  +    I A + + AL+ GK IH  + +   ++D  V T+L
Sbjct: 1182 DHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSL 1241

Query: 349  IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD 408
            +DMY KCGS+ +A R+F  M  + V+ +N M+ GL  +G  +EAL  F  M++ GI  D 
Sbjct: 1242 VDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDK 1301

Query: 409  LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468
            + F+GVL ACSHSGL +E Y+ F +M +  GI P++EHYSCLVD L RAG +++A N++ 
Sbjct: 1302 VTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIA 1361

Query: 469  SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528
            SMP K + +++  LL ACR   +   A+ V + L+ L   D   YVLLSNIYA +  W+ 
Sbjct: 1362 SMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDD 1421

Query: 529  ALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
                R MM+ + +KK+ G S I++   +  FV
Sbjct: 1422 VTDARNMMKLKNVKKDPGFSWIDVKNKVHLFV 1453



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 178/365 (48%), Gaps = 13/365 (3%)

Query: 40   LITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSF 99
            +I + F +S  L+ L S     MD+AE L +  Y  +    N ++ GY +S+  +KAL  
Sbjct: 1029 IINDSF-VSTALIDLYSKGG-KMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEH 1086

Query: 100  YVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSK 159
            +  M   G+ +D  T    +KA G L+ L +G +I    +K+GF  D++V +G++ MY K
Sbjct: 1087 FSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIK 1146

Query: 160  CGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIM 215
            CG M  A  +F      D V+W  ++ G++E G+   A  V+  M     Q D  +++ +
Sbjct: 1147 CGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATL 1206

Query: 216  IDGYR----KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271
            I         ++G    A ++     +   +   S++D Y K G +  A ++F +M  R 
Sbjct: 1207 IKASSCLTALEQGKQIHANVVKLDYSLDHFVG-TSLVDMYCKCGSVQDAYRVFRKMDVRK 1265

Query: 272  VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIH 330
            V  W+ M+ G AQHG+  EAL LFR M   G++PD ++ +G +SAC+  G      K+  
Sbjct: 1266 VVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFD 1325

Query: 331  VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS-YNVMIAGLGMNGFG 389
               K   IT ++   + L+D   + G + EA  +  SM  K   S Y  ++      G  
Sbjct: 1326 AMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDA 1385

Query: 390  EEALK 394
            E A +
Sbjct: 1386 ETAKR 1390



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 119/520 (22%), Positives = 225/520 (43%), Gaps = 61/520 (11%)

Query: 64   QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            QA  LF+++ + +  + N M++ Y ++S   +AL F+    R G   D      V+   G
Sbjct: 770  QARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIG--G 827

Query: 124  VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            V   +    + H E VK                         A  +F   +  ++ +WN 
Sbjct: 828  VNSDVSNNRKRHAEQVK-----------------------AYAMKMFPFDQGSNIFAWNK 864

Query: 184  VLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKG-----DISSARILFE 234
             L  F+  G++  A + F  + +     D+++  I++              I +  I   
Sbjct: 865  KLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSS 924

Query: 235  HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
              P+  +   NS+++ Y+K G + AA++ F   PE ++ SW+ MI  YAQ+    EA+  
Sbjct: 925  FAPVVPVS--NSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICT 982

Query: 295  FREMLCQGVRPDVISVMGAISACA---QVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
            FR++L  G++PD  ++   + AC+   +     LG  +HV+  +  I  D  V TALID+
Sbjct: 983  FRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDL 1042

Query: 352  YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
            Y K G +DEA  + +     ++ S+N ++ G   +    +AL+ F+ M   GIP D+ I 
Sbjct: 1043 YSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDE-IT 1101

Query: 412  LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
            L   I  S   +  +  +  Q+     G    L   S ++D+  + G++  AL +   + 
Sbjct: 1102 LATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEIS 1161

Query: 472  MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL----LSNIYADAGMWE 527
             +P+   W T+                + G +E   +D  L V     +S +  D   + 
Sbjct: 1162 -RPDEVAWTTM----------------ISGYIENGDEDHALSVYHLMRVSGVQPDEYTFA 1204

Query: 528  HALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDV 567
              ++    +   +  K+   +V+++D ++  FV   + D+
Sbjct: 1205 TLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDM 1244



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 88/200 (44%), Gaps = 36/200 (18%)

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G   H  +V  G L D ++ N LI MYSKCG +  AR VF+ S  +DLV+WN +L  + +
Sbjct: 630 GKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQ 689

Query: 191 CGE------------MGKAREVFDEMPQ------------KDAISWSIMIDGYRKKKGDI 226
             +             G  RE    + +               +  S  + GY       
Sbjct: 690 FADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGY------- 742

Query: 227 SSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
            + +I FE     DL    ++++ Y K G +  A+ LF++MPER+   W++M+  Y ++ 
Sbjct: 743 -AVKIGFE----LDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENS 797

Query: 287 NPKEALYLFREMLCQGVRPD 306
              EAL  F      G  PD
Sbjct: 798 FQDEALRFFSAFHRSGFXPD 817



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 99/192 (51%), Gaps = 8/192 (4%)

Query: 222 KKGDISSARILFE-HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMID 280
           K G  + ARI+    +P + L   N++I  Y+K G L +A+Q+F++  +R++ +W+ ++ 
Sbjct: 628 KLGKRAHARIVTSGDLPDRYLT--NNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILA 685

Query: 281 GYAQ-----HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
            YAQ     + N  E   LF  +   G     +++   +  C   G + + + +H +  +
Sbjct: 686 AYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVK 745

Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
               +D+ V  AL+++Y K G + +AR +F  M +++ + +NVM+     N F +EAL+ 
Sbjct: 746 IGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRF 805

Query: 396 FAQMETEGIPKD 407
           F+     G   D
Sbjct: 806 FSAFHRSGFXPD 817



 Score = 45.8 bits (107), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 21/175 (12%)

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
           L LGK  H  +  S    D  +   LI MY KCGSL  AR++F   + ++++++N ++A 
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAA 686

Query: 383 LGMNGFGE-------EALKCFAQMETEGIPKDDLIFLGVLIACSHSGL-----ATEGYRI 430
                F +       E  + F  +   G     L    +L  C  SG         GY +
Sbjct: 687 YAQ--FADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAV 744

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
                   G E  L     LV++  + G + QA  + + MP + +  LW  +L A
Sbjct: 745 ------KIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPER-DAVLWNVMLKA 792


>gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 606

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 183/557 (32%), Positives = 305/557 (54%), Gaps = 20/557 (3%)

Query: 38  NDLITEPFTLSQLLMSLTSP--NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQK 95
           ND    P  L+ L   L     +  + ++A  LF+++   +     +MI GYT  ++  +
Sbjct: 31  NDTPFNPKDLTGLTTDLIKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSR 90

Query: 96  ALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFL-CDVFVVNGLI 154
           A + + NM R G+  + +T   VLKAC  L  L+ G  +HG  +K+G     ++V N L+
Sbjct: 91  AWNVFTNMLRDGVKPNAFTVSAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALM 150

Query: 155 GMYSKC-GHMGCARSVFEGSEIKDLVSWNLVLRGFVE----CGEMGKAREVFDEMPQKDA 209
            MY+ C   M  AR VFE    K+ VSW  ++ G+       G +   R++F E  +   
Sbjct: 151 DMYATCCDSMDNARLVFEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSP 210

Query: 210 ISWSIMID-----GYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
            S+SI +      G       + +A I   H    +L   N+++D Y +      A+QLF
Sbjct: 211 FSFSIAVSACASIGSSNLGKQVHAAVI--NHGFESNLPVMNAILDMYCRCRCASEAKQLF 268

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
            EM +++  +W+ +I G+ +  +  E+L +F +M+ +G  P+  +    I+ACA +  L 
Sbjct: 269 GEMTQKDTITWNTLIAGF-ETLDSYESLCIFSQMVSEGFSPNCFTFTSVIAACANLAILY 327

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
            G+ +H  +    +  ++ +  ALIDMY KCG++ ++ +IF  M   N++S+  M+ G G
Sbjct: 328 CGQQLHGGIIHRGLDNNLELSNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGYG 387

Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444
            +G G+EA+  F +M   GI  D ++F+ VL ACSH+GL  EG R F+ M  +  + P  
Sbjct: 388 AHGHGKEAVDLFNEMVGSGIKPDKIVFMAVLSACSHAGLVDEGLRYFRLMTSYYNVAPDR 447

Query: 445 EHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE 504
           + Y+C+VDLLSRAG +++A  ++E+MP KP+ ++W  LL AC+ ++  ++ ++    ++E
Sbjct: 448 DIYACVVDLLSRAGRVKEAYELIENMPFKPDESIWVALLGACKKYKQPSIQKLAALKVLE 507

Query: 505 LKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEI 564
           +K +  G YVLLSN  A  G W     +RK+MR  K KKE GRS IE+   +  F+ G+I
Sbjct: 508 MKPNKAGTYVLLSNFSAAEGNWADFASLRKLMRSTKSKKEVGRSWIELKNQVCSFIVGDI 567

Query: 565 FDVQSEE----LELVIQ 577
           FD  ++E    LEL+I+
Sbjct: 568 FDSSNKEVCEVLELLIR 584


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 183/527 (34%), Positives = 278/527 (52%), Gaps = 71/527 (13%)

Query: 94  QKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGL 153
            +A+     M+R G+  D  TY  ++K C     + EG  +H  +   G+   +FVVN L
Sbjct: 37  HRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTL 96

Query: 154 IGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWS 213
           + MY                     V +NL          + +A ++FDEMP+++ +SW+
Sbjct: 97  LNMY---------------------VKFNL----------LEEAEDLFDEMPERNVVSWT 125

Query: 214 IMIDGYRKKKGD--------------------ISSARILFEHMP---------IK----- 239
            MI  Y  K  D                     SS     + +P         IK     
Sbjct: 126 TMISAYSNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGLES 185

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
           D+   +++ID Y+K  DL  A  +F+EMP R++  W+ +I G+AQ+ +  EAL LF+ M 
Sbjct: 186 DVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMK 245

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
             G   D  ++   + AC  +  L+LG+ +HV +   +   D+I+  ALIDMY KCGSL+
Sbjct: 246 RAGFLADQATLTSVLRACTGLALLELGRQVHVHV--LKFDQDLILNNALIDMYCKCGSLE 303

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
           +A   F  M +K+VIS++ M+AGL  NG+  +AL+ F  M+  G   + +  LGVL ACS
Sbjct: 304 DANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACS 363

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
           H+GL  +G+  F+SMK+  G++P  EHY CL+DLL RAG L++A+ ++  M  +P+   W
Sbjct: 364 HAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTW 423

Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
            TLL ACR H+NV LA    + ++EL+ +D G Y+LLSNIYA+   WE    +RK M  R
Sbjct: 424 RTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNR 483

Query: 540 KIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586
            I+K  G S IE+D  I  F+ G   D    ++E ++Q  +   IER
Sbjct: 484 GIRKTPGCSWIEVDKQIHVFILG---DTSHPKIEEIVQR-LNDLIER 526



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 173/335 (51%), Gaps = 16/335 (4%)

Query: 43  EP--FTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFY 100
           EP  F ++ LL      N L  ++AE LF+++ + N     TMI  Y+   N  KAL   
Sbjct: 87  EPKMFVVNTLLNMYVKFNLL--EEAEDLFDEMPERNVVSWTTMISAYSNKLN-DKALKCL 143

Query: 101 VNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC 160
           + M R+G+  + +TY  VL+AC    GL    ++H  ++K G   DVFV + LI +YSK 
Sbjct: 144 ILMFREGVRPNMFTYSSVLRACD---GLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKW 200

Query: 161 GHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR 220
             +  A  VF+    +DLV WN ++ GF +  +  +A  +F  M +   ++    +    
Sbjct: 201 SDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVL 260

Query: 221 KKKGDISSARILFE-HMPI----KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
           +    ++   +  + H+ +    +DLI  N++ID Y K G L  A   F+ M E++V SW
Sbjct: 261 RACTGLALLELGRQVHVHVLKFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISW 320

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
           S M+ G AQ+G  ++AL LF  M   G RP+ I+V+G + AC+  G ++ G W +    +
Sbjct: 321 STMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKG-WYYFRSMK 379

Query: 336 SRITMDMIVQT--ALIDMYMKCGSLDEARRIFYSM 368
               +D   +    LID+  + G LDEA ++ + M
Sbjct: 380 KLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEM 414



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 149/304 (49%), Gaps = 17/304 (5%)

Query: 188 FVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMPIK---- 239
           F    ++ +A    D M +     DAI++S +I      +G +   + + EH+  K    
Sbjct: 30  FCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCC-SARGAVQEGKRVHEHIFCKGYEP 88

Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
            +   N++++ Y K   L  A+ LF+EMPERNV SW+ MI  Y+   N K AL     M 
Sbjct: 89  KMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLNDK-ALKCLILMF 147

Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
            +GVRP++ +    + AC  +  L   + +H  + ++ +  D+ V++ALID+Y K   LD
Sbjct: 148 REGVRPNMFTYSSVLRACDGLPNL---RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLD 204

Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
            A  +F  M  ++++ +N +I G   N  G EAL  F +M+  G   D      VL AC+
Sbjct: 205 NALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACT 264

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
              L   G ++   + +    +  L   + L+D+  + G LE A N   S  ++ ++  W
Sbjct: 265 GLALLELGRQVHVHVLK---FDQDLILNNALIDMYCKCGSLEDA-NSAFSRMVEKDVISW 320

Query: 480 GTLL 483
            T++
Sbjct: 321 STMV 324


>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 178/545 (32%), Positives = 295/545 (54%), Gaps = 15/545 (2%)

Query: 39  DLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALS 98
           +LI + F L+ LL   +   +L    A  LFN +   +  + N+MI  Y       +A++
Sbjct: 292 NLINDLFILNALLNMYSDNGSLESSWA--LFNAVPTSDAALWNSMISSYIGFGFHAEAIA 349

Query: 99  FYVNMKRKGLLVDNYTYPFVLKACGVLM-GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMY 157
            ++ M+ + +  D  T   +L  C  L  G + G  +H   +K G   D ++ N L+ MY
Sbjct: 350 LFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMY 409

Query: 158 SKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAI--SWSIM 215
            K   +  A+ VFE     D++SWN ++  F +     KA E+F  M + +    S++I+
Sbjct: 410 VKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIV 469

Query: 216 -IDGYRKKKGDISSARILFEHMPIKDLISWN-----SMIDGYAKIGDLVAAQQLFNEMPE 269
            +  + K   D+   R +     IK+ +  N     S+ + Y   GD  AA  +F   P+
Sbjct: 470 SLLAFCKDGSDLVFGRSI-HGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQ 528

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329
           R++ SW+ +I  Y ++ N  +AL LF  M+ + + P+ ++++  +++C Q+  L LG+ +
Sbjct: 529 RDLVSWNSLISSYIKNDNAGKALLLFNHMISE-LEPNSVTIINILTSCTQLAHLPLGQCL 587

Query: 330 HVFMKRSRIT--MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
           H +  R  ++  MD  +  A I MY +CG L  A +IF ++  ++++S+N MI G GM+G
Sbjct: 588 HAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVSWNAMITGYGMHG 647

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
            G +A   FAQM  +G   +++ F  VL ACSHSGL   G ++F SM R  GI P+L HY
Sbjct: 648 RGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLTHY 707

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
            C+VDLL R G   +A+  + SMP++P+ ++W  LL +C+   N  L E +   LVEL+ 
Sbjct: 708 GCMVDLLGRGGHFSEAIAFINSMPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEP 767

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDV 567
            + G ++LLSNIYA AG+W   ++IRK +R+R + K  G S I I   +  F + ++   
Sbjct: 768 SNPGNFILLSNIYAAAGLWSEVVQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHP 827

Query: 568 QSEEL 572
           QSE +
Sbjct: 828 QSERI 832



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 204/429 (47%), Gaps = 12/429 (2%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           +A ++F ++ + +    N +I GY      ++A+  +V MK+ GL  ++ T   +L ACG
Sbjct: 113 EASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACG 172

Query: 124 VLMGLVEGTEIHGEVVKMG-FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
            ++ L  G EIHG  ++ G F  D +V   L+G Y +   +   R VF    ++++VSWN
Sbjct: 173 EMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAVLSHR-VFSLMLVRNIVSWN 231

Query: 183 LVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDG---YRKKKGDISSARILFEH 235
            ++ GF+  G+  KA +++  M     + DA++  ++I     Y   +  +   ++  + 
Sbjct: 232 AIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKF 291

Query: 236 MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
             I DL   N++++ Y+  G L ++  LFN +P  +   W+ MI  Y   G   EA+ LF
Sbjct: 292 NLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALF 351

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDL-GKWIHVFMKRSRITMDMIVQTALIDMYMK 354
            +M  + ++ DV ++   +S C  +    + G+ +H    +S I +D  +  AL+ MY+K
Sbjct: 352 IKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVK 411

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
              +  A+ +F  M   +VIS+N MI+    + F  +A + F  M    I  +    + +
Sbjct: 412 HNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSL 471

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L  C        G R         G+E      + L ++    G+   A N+    P + 
Sbjct: 472 LAFCKDGSDLVFG-RSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQR- 529

Query: 475 NLALWGTLL 483
           +L  W +L+
Sbjct: 530 DLVSWNSLI 538



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 163/365 (44%), Gaps = 69/365 (18%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N++I+ +T+  N    LS Y  M+  G+  D+ T P VLKACG L  +  G  IH  +  
Sbjct: 29  NSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSFIRG 88

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
           +  + DV V   L+  Y KCG                                + +A +V
Sbjct: 89  LDLINDVRVGTALVDFYCKCG-------------------------------LVAEASKV 117

Query: 201 FDEMPQKDAISWSIMIDGY---------------RKKKGDISSARILFEHM--------- 236
           F EMP++D +SW+ +I GY                KK G   ++R +   +         
Sbjct: 118 FVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEMLEL 177

Query: 237 ----PIKDLISWNSMIDGYAKIG----------DLVAAQQLFNEMPERNVFSWSIMIDGY 282
                I      N + D  A +G          D V + ++F+ M  RN+ SW+ +I G+
Sbjct: 178 RLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAVLSHRVFSLMLVRNIVSWNAIITGF 237

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
              G+  +AL L+  ML +G++ D ++++  I ACA+ G L LG  +H    +  +  D+
Sbjct: 238 LNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDL 297

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
            +  AL++MY   GSL+ +  +F ++   +   +N MI+     GF  EA+  F +M  E
Sbjct: 298 FILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLE 357

Query: 403 GIPKD 407
            I +D
Sbjct: 358 RIKED 362



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/443 (23%), Positives = 202/443 (45%), Gaps = 14/443 (3%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           + R+F+ +   N    N +I G+    +  KAL  Y +M  +G+  D  T   V++AC  
Sbjct: 215 SHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAE 274

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
              L  G ++H   +K   + D+F++N L+ MYS  G +  + ++F      D   WN +
Sbjct: 275 YGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSM 334

Query: 185 LRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK- 239
           +  ++  G   +A  +F +M     ++D  + +IM+             R L  H     
Sbjct: 335 ISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSG 394

Query: 240 ---DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
              D    N+++  Y K   + AAQ +F +M   +V SW+ MI  +AQ     +A  LF 
Sbjct: 395 IELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFL 454

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
            M    ++ +  +++  ++ C     L  G+ IH F  ++ + ++  + T+L +MY+ CG
Sbjct: 455 MMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCG 514

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
               A  +F    +++++S+N +I+    N    +AL  F  M +E  P + +  + +L 
Sbjct: 515 DERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHMISELEP-NSVTIINILT 573

Query: 417 ACSHSGLATEGYRIFQ-SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
           +C+       G  +   + +R   +E      +  + + +R G+L+ A  I  ++  + +
Sbjct: 574 SCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTR-S 632

Query: 476 LALWGTLLLACRNH---QNVTLA 495
           +  W  ++     H   ++ TLA
Sbjct: 633 IVSWNAMITGYGMHGRGRDATLA 655



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 79/144 (54%)

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W+ +I  + +  N    L  + +M   G+ PD  ++   + AC ++ A+  G  IH F++
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSFIR 87

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
              +  D+ V TAL+D Y KCG + EA ++F  M +++++S+N +I+G       +EA+ 
Sbjct: 88  GLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVL 147

Query: 395 CFAQMETEGIPKDDLIFLGVLIAC 418
            F +M+  G+  +    + +L+AC
Sbjct: 148 LFVEMKKAGLTPNSRTVVALLLAC 171


>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
          Length = 1198

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 155/410 (37%), Positives = 250/410 (60%), Gaps = 1/410 (0%)

Query: 151 NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAI 210
           N +I    +   +  A  +FE    ++++S+  ++ G+ + GE+ +AR +F+ MPQK+ +
Sbjct: 72  NAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVV 131

Query: 211 SWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER 270
           SW++MI GY  + G    A  LFE MP K++++  +MI GY K G    A+ LF+++P R
Sbjct: 132 SWTVMISGY-VENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCR 190

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           ++ SW+ MI GYAQ+G+ +EAL L  +ML  G++PD  +++  ++AC+ + +L  G+  H
Sbjct: 191 DLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTH 250

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
           V + +S     + +  ALI MY KCGS+ ++   F  +   +V+S+N MIA    +GF +
Sbjct: 251 VLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYD 310

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
            AL  F +M +  +  D + FL +L AC H+G   E    F SM     I P+ EH++CL
Sbjct: 311 RALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACL 370

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           VD+LSR G++E+A  I++ MP + +  +WG LL AC  H NV L E+  + +VEL+  + 
Sbjct: 371 VDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNS 430

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
           G YV+LSNIYA AGMW    R+R +MR++ +KK+   S +EID  +  F+
Sbjct: 431 GAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFFL 480



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 168/347 (48%), Gaps = 48/347 (13%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D    N +I  Y K G    ++ +F     K++VSWN ++ G +E   + +A + F  MP
Sbjct: 5   DTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMP 64

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
           Q++  SW+ MI G   +   +  A  LFE MP +++IS+ +M+DGYAKIG++  A+ LFN
Sbjct: 65  QRNTASWNAMISGL-VRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFN 123

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
            MP++NV SW++MI GY ++G   EA  LF +M      PD                   
Sbjct: 124 CMPQKNVVSWTVMISGYVENGKFDEAENLFEQM------PD------------------- 158

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
                          +++  TA+I  Y K G  D+A+ +F  +  +++ S+N MI G   
Sbjct: 159 --------------KNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQ 204

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           NG GEEALK  +QM   G+  D    + VL ACS      EG R    +    G E ++ 
Sbjct: 205 NGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEG-RKTHVLVLKSGYESRIS 263

Query: 446 HYSCLVDLLSRAGEL---EQALNIVESMPMKPNLALWGTLLLACRNH 489
             + L+ +  + G +   E A   ++     P++  W  ++ A   H
Sbjct: 264 ICNALITMYCKCGSILDSELAFRQIDH----PDVVSWNAMIAAFARH 306



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 74/142 (52%)

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
           D+A+ LF+QI   +    N MI GY Q+ + ++AL  +  M + G+  D+ T   VL AC
Sbjct: 178 DKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTAC 237

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
             L  L EG + H  V+K G+   + + N LI MY KCG +  +   F   +  D+VSWN
Sbjct: 238 SSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWN 297

Query: 183 LVLRGFVECGEMGKAREVFDEM 204
            ++  F   G   +A   F EM
Sbjct: 298 AMIAAFARHGFYDRALASFGEM 319



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 140/347 (40%), Gaps = 80/347 (23%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +++A RLF ++ + N   +  M+ GY +    ++A + +  M +K ++  ++T       
Sbjct: 84  VEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVV--SWTV------ 135

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
                                          +I  Y + G    A ++FE    K++V+ 
Sbjct: 136 -------------------------------MISGYVENGKFDEAENLFEQMPDKNIVAM 164

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM----- 236
             ++ G+ + G+  KA+ +FD++P +D  SW+ MI GY  + G    A  L   M     
Sbjct: 165 TAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGY-AQNGSGEEALKLHSQMLKMGM 223

Query: 237 --PIKDLIS--------------------------------WNSMIDGYAKIGDLVAAQQ 262
                 LIS                                 N++I  Y K G ++ ++ 
Sbjct: 224 QPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSEL 283

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
            F ++   +V SW+ MI  +A+HG    AL  F EM    V PD I+ +  +SAC   G 
Sbjct: 284 AFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGK 343

Query: 323 LDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           +     W +  ++  +I         L+D+  + G +++A +I   M
Sbjct: 344 VHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEM 390


>gi|280967731|gb|ACZ98537.1| PPR motif protein [Malus x domestica]
          Length = 751

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 170/515 (33%), Positives = 289/515 (56%), Gaps = 32/515 (6%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ AE +F+++ + +    N +I GY Q     KAL+    M+ + L  D+ T   ++ A
Sbjct: 251 IEDAESVFSRMLEKDVVTWNLLISGYVQIGEVDKALNMCHLMRLENLRFDSVTLATLMSA 310

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
              +  L  G E H   ++     DV VV+ ++ MY+KC  +GCAR VF  S  KDL+ W
Sbjct: 311 FADMRNLKLGKEGHCYCIRNNLESDVVVVSSIVDMYAKCEKIGCARRVFNSSITKDLILW 370

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
           N +L  F E G  G+A  +F +M                             E +P  ++
Sbjct: 371 NTMLAAFAELGHSGEALNLFYQMQ---------------------------LESVP-PNV 402

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMP----ERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
           ISWNS+I G+   G +  A+ +F +M     + N+ +W+ +I G A+ G   EA+  F+ 
Sbjct: 403 ISWNSLILGFLNSGQVNEAKDMFLQMQSLGVQPNLVTWTTLISGLARSGFGYEAILTFQR 462

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
           M   GV+P+V+S++G + AC  + +L +G+ +H ++ R  + + + + T+L+DMY KCG 
Sbjct: 463 MQEAGVKPNVVSIIGVLLACINLASLQIGRALHGYLIRHSLYLSIPIATSLVDMYAKCGD 522

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
            D+A+R+F  +  K +  YN MI+G  ++G   EAL  +  ++ EG+  D++ F   L A
Sbjct: 523 RDQAKRVFDMIPDKELPIYNAMISGFALHGQAVEALALYRCLKEEGLKPDNITFTNALYA 582

Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
           CSH+ + +EG  +F  M  +  I P +EHY C+V LLSR G+L++A  ++ +MP KP++ 
Sbjct: 583 CSHAMMVSEGLELFVDMVSNHNINPSIEHYGCMVSLLSRCGDLDEAFGLISAMPYKPDVQ 642

Query: 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537
           + G+LL ACR H  + L E +   L++L+ D+ G YV +SN YA AG W+   ++R++M+
Sbjct: 643 ILGSLLAACREHNKIELEEYLSNQLLKLQPDNSGNYVAMSNAYAAAGRWDEVKKVRQLMK 702

Query: 538 KRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           +R ++K  G S I++   +  FV+G+    ++EE+
Sbjct: 703 ERGLRKIPGCSWIQVGEELNVFVAGDKSHPETEEI 737



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 127/492 (25%), Positives = 241/492 (48%), Gaps = 26/492 (5%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N + +  LF ++   N +    +I    +    Q+AL  +  M+  GLL DN+  P VLK
Sbjct: 62  NPEASNSLFRRVRLKNVFSWAAVIGLNCRKGFYQEALLGFKEMQENGLLPDNFVLPNVLK 121

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           ACG L  +  G  +HG +V  G++  ++   G                       ++ V+
Sbjct: 122 ACGGLEWIRIGKVVHG-LVSCGYVWKMWGGGGCKKGVCGMPQ-------------RNAVA 167

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKD 240
           WN ++ G+V+ G   +A EVF EM ++      + +  +     ++ + +   +   I  
Sbjct: 168 WNSMIVGYVQNGLNEEAIEVFYEMREEGVEPTQVTLSSFLSASANLGALQDGKQGHAIAV 227

Query: 241 LIS-------WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
           +          +S+I+ Y+K+G +  A+ +F+ M E++V +W+++I GY Q G   +AL 
Sbjct: 228 ICGIEMTTNLGSSLINFYSKVGLIEDAESVFSRMLEKDVVTWNLLISGYVQIGEVDKALN 287

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           +   M  + +R D +++   +SA A +  L LGK  H +  R+ +  D++V ++++DMY 
Sbjct: 288 MCHLMRLENLRFDSVTLATLMSAFADMRNLKLGKEGHCYCIRNNLESDVVVVSSIVDMYA 347

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KC  +  ARR+F S   K++I +N M+A     G   EAL  F QM+ E +P + + +  
Sbjct: 348 KCEKIGCARRVFNSSITKDLILWNTMLAAFAELGHSGEALNLFYQMQLESVPPNVISWNS 407

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP-- 471
           +++   +SG   E   +F  M+   G++P L  ++ L+  L+R+G   +A+   + M   
Sbjct: 408 LILGFLNSGQVNEAKDMFLQMQS-LGVQPNLVTWTTLISGLARSGFGYEAILTFQRMQEA 466

Query: 472 -MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD-DCGLYVLLSNIYADAGMWEHA 529
            +KPN+     +LLAC N  ++ +   +   L+         +   L ++YA  G  + A
Sbjct: 467 GVKPNVVSIIGVLLACINLASLQIGRALHGYLIRHSLYLSIPIATSLVDMYAKCGDRDQA 526

Query: 530 LRIRKMMRKRKI 541
            R+  M+  +++
Sbjct: 527 KRVFDMIPDKEL 538



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 107/233 (45%), Gaps = 16/233 (6%)

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           YAK  +  A+  LF  +  +NVFSW+ +I    + G  +EAL  F+EM   G+ PD   +
Sbjct: 57  YAKCDNPEASNSLFRRVRLKNVFSWAAVIGLNCRKGFYQEALLGFKEMQENGLLPDNFVL 116

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
              + AC  +  + +GK +H  +    +               K       ++    M +
Sbjct: 117 PNVLKACGGLEWIRIGKVVHGLVSCGYV--------------WKMWGGGGCKKGVCGMPQ 162

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           +N +++N MI G   NG  EEA++ F +M  EG+    +     L A ++ G   +G + 
Sbjct: 163 RNAVAWNSMIVGYVQNGLNEEAIEVFYEMREEGVEPTQVTLSSFLSASANLGALQDG-KQ 221

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             ++   CGIE      S L++  S+ G +E A ++   M ++ ++  W  L+
Sbjct: 222 GHAIAVICGIEMTTNLGSSLINFYSKVGLIEDAESVFSRM-LEKDVVTWNLLI 273



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 2/107 (1%)

Query: 314 ISACAQVGALDLGKWIH--VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
           +  C    AL  G+ IH  +  K +   M+  ++T L+  Y KC + + +  +F  +  K
Sbjct: 17  LQGCVYERALHTGRQIHAQIVKKGAIFAMNEYIETKLVIFYAKCDNPEASNSLFRRVRLK 76

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
           NV S+  +I      GF +EAL  F +M+  G+  D+ +   VL AC
Sbjct: 77  NVFSWAAVIGLNCRKGFYQEALLGFKEMQENGLLPDNFVLPNVLKAC 123


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 180/528 (34%), Positives = 291/528 (55%), Gaps = 7/528 (1%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A +LF+++ + NT    TMI GY  S    KA+  +  M+R+  + + +    VL A   
Sbjct: 172 ARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTS 231

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
            + +  G ++H   +K G L  V V N L+ MY+KCG +  A   FE S  K+ ++W+ +
Sbjct: 232 DVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAM 291

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSA-------RILFEHMP 237
           + G+ + G+  KA ++F++M     +     + G      D+ +           F+   
Sbjct: 292 VTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLGF 351

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
              L   ++++D YAK G L  A++ F  + + +V  W+ +I GY Q+G+ +  L L+ +
Sbjct: 352 GLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGK 411

Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
           M  + V P+ +++   + AC+ + ALD GK +H  + +    +++ + +AL  MY KCGS
Sbjct: 412 MQMERVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGS 471

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
           LD+   IF+ M  ++VIS+N MI+GL  NG G +AL+ F +M  EGI  D + F+ +L A
Sbjct: 472 LDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPVTFVNLLSA 531

Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
           CSH GL   G+  F+ M     I P +EHY+C+VD+LSRAG+L +A   +ES  +   L 
Sbjct: 532 CSHMGLVDRGWEYFKMMFDEFNIAPMVEHYACMVDILSRAGKLNEAKEFIESATVDHGLC 591

Query: 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537
           LW  LL AC+NH+N  L     E LVEL + +   YVLLS+IY   G  E+  R+R++M+
Sbjct: 592 LWRILLGACKNHRNYELGVYAGEKLVELGSPESSAYVLLSSIYTALGDRENVERVRRIMK 651

Query: 538 KRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
            R + KE G S IE+ G +  FV G+    Q +E+ L ++   K  I+
Sbjct: 652 ARGVNKEPGCSWIELKGLVHVFVVGDNQHPQVDEIRLELELLTKLMID 699



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 147/540 (27%), Positives = 258/540 (47%), Gaps = 26/540 (4%)

Query: 18  LLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPN----TLNMDQAERLFNQIY 73
           LLQ     TH   IL   T +  I +  ++S + ++ T  N    T ++  A  LF+ I 
Sbjct: 14  LLQDLIECTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSIN 73

Query: 74  Q--PNTYMHNTMIRGYTQSSNPQK---ALSFYVNMKRKGLLVDN-YTYPFVLKACGVLMG 127
               +    N++I  ++Q+ +      A+S +  M R   ++ N +T   V  A   L  
Sbjct: 74  DNDKDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSD 133

Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
           +V G + H   VK G   DV+V + L+ MY K G +  AR +F+    ++ VSW  ++ G
Sbjct: 134 VVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISG 193

Query: 188 FVECGEMGKAREVFDEMPQKDAIS---------WSIMIDGYRKKKGDISSARILFEHMPI 238
           +       KA EVF+ M +++ I           ++  D +      + S  I    + I
Sbjct: 194 YASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAI 253

Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
             +   N+++  YAK G L  A + F    ++N  +WS M+ GYAQ G+  +AL LF +M
Sbjct: 254 VSVA--NALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKM 311

Query: 299 LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
              GV P   +++G I+AC+ + A+  GK +H F  +    + + V +A++DMY KCGSL
Sbjct: 312 HSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSL 371

Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
            +AR+ F  + + +V+ +  +I G   NG  E  L  + +M+ E +  ++L    VL AC
Sbjct: 372 ADARKGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRAC 431

Query: 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
           S      +G ++   + ++ G + ++   S L  + ++ G L+    I   MP +  ++ 
Sbjct: 432 SSLAALDQGKQMHARIIKY-GFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPSRDVIS- 489

Query: 479 WGTLL--LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
           W  ++  L+   H N  L E+  + L+E    D   +V L +  +  G+ +      KMM
Sbjct: 490 WNAMISGLSQNGHGNKAL-ELFEKMLLEGIKPDPVTFVNLLSACSHMGLVDRGWEYFKMM 548



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 165/323 (51%), Gaps = 20/323 (6%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D A R F      N+   + M+ GY Q  +  KAL  +  M   G+L   +T   V+ 
Sbjct: 269 SLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVIN 328

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  +VEG ++H    K+GF   ++V++ ++ MY+KCG +  AR  FE  +  D+V 
Sbjct: 329 ACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVL 388

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK--------KKGDISSARIL 232
           W  ++ G+V+ G+      ++ +M  +  I   + +    +         +G    ARI+
Sbjct: 389 WTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHARII 448

Query: 233 ---FE-HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNP 288
              F+  +PI   +S  +M   Y K G L     +F  MP R+V SW+ MI G +Q+G+ 
Sbjct: 449 KYGFKLEVPIGSALS--AM---YTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHG 503

Query: 289 KEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ--T 346
            +AL LF +ML +G++PD ++ +  +SAC+ +G +D G W +  M      +  +V+   
Sbjct: 504 NKALELFEKMLLEGIKPDPVTFVNLLSACSHMGLVDRG-WEYFKMMFDEFNIAPMVEHYA 562

Query: 347 ALIDMYMKCGSLDEARRIFYSMT 369
            ++D+  + G L+EA+    S T
Sbjct: 563 CMVDILSRAGKLNEAKEFIESAT 585


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 178/504 (35%), Positives = 264/504 (52%), Gaps = 41/504 (8%)

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKG--LLVDNYTYPFVLKACGVLMGLVEGTE 133
            T   N +IR  T SS  + AL  + +M+ +G     D+YTYP  LK+C     L+ G +
Sbjct: 85  TTVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKDLLLGLQ 144

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           IH  V K+    +V+V +  I MYS+CG    A  VF+G   +D+VSWN ++ GF   G 
Sbjct: 145 IHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGL 204

Query: 194 MGKAREVFDE-------MPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNS 246
             +A EVF +       MP    ++  +   G   K  DI   R +F++M  K+LISWN+
Sbjct: 205 FDRAIEVFKQFVVLQGSMPDAGTMAGILPAMG-NAKPDDIRFVRRVFDNMQFKELISWNA 263

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           M+  YA     V A +LF  M +                                 V PD
Sbjct: 264 MLAVYANNEFHVKAVELFMLMEKDE-------------------------------VEPD 292

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
            I++   +  C ++ A  +GK IH  +KR  +  +++++ AL+DMY  CG L +AR IF 
Sbjct: 293 SITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFD 352

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            M+ ++VIS+  +I+  G +G G EA+  F +M  +G+  D + F+ VL ACSH+GL  +
Sbjct: 353 LMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLAD 412

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G   F SM     I PK EHY+C+VDLL RAG + +A + + +M ++PN  +WG LL AC
Sbjct: 413 GKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEPNERVWGALLQAC 472

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           R H N+ +  V  + L  L  +  G YVLLSN+YA AG W     +R +M  + IKK  G
Sbjct: 473 RIHSNMDIGLVAADNLFSLVPEQTGYYVLLSNMYARAGRWADVTSVRSVMVNKGIKKFPG 532

Query: 547 RSVIEIDGNIKEFVSGEIFDVQSE 570
            S++E+   +  F  G+    QSE
Sbjct: 533 TSIVELGDQVHTFHIGDRCHPQSE 556



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 115/253 (45%), Gaps = 13/253 (5%)

Query: 46  TLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKR 105
           T++ +L ++ +    ++    R+F+ +        N M+  Y  +    KA+  ++ M++
Sbjct: 227 TMAGILPAMGNAKPDDIRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLMEK 286

Query: 106 KGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC-DVFVVNGLIGMYSKCGHMG 164
             +  D+ T   VL  CG L     G  IH E++K   +C ++ + N L+ MY+ CG + 
Sbjct: 287 DEVEPDSITLATVLPPCGELSAFSVGKRIH-EIIKRKNMCPNLLLENALMDMYASCGCLK 345

Query: 165 CARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYR 220
            AR +F+    +D++SW  ++  + + G   +A ++F++M     + D+I++ + +    
Sbjct: 346 DAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAF-VAVLAAC 404

Query: 221 KKKGDISSARILFEHMPIKDLI-----SWNSMIDGYAKIGDLVAAQQLFNEM-PERNVFS 274
              G ++  +  F+ M  +  I      +  M+D   + G +  A      M  E N   
Sbjct: 405 SHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEPNERV 464

Query: 275 WSIMIDGYAQHGN 287
           W  ++     H N
Sbjct: 465 WGALLQACRIHSN 477


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 175/563 (31%), Positives = 304/563 (53%), Gaps = 10/563 (1%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           Q+   +   +   +P+  + LL       ++  + A+++F+Q+      + N MI  +  
Sbjct: 265 QVHCDVIKMNFQDDPYVCTSLLTMYAKSGSV--EDAKKVFDQVLDKEVELRNAMISAFIG 322

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
           +     AL  Y  MK     VD++T   +L  C V+     G  +H EV+K     +V +
Sbjct: 323 NGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAI 382

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA 209
            + L+ MY KCG    A SVF   + +D+V+W  ++ GF +      A ++F  M ++  
Sbjct: 383 QSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGV 442

Query: 210 ISWSIMIDGYRKKKGDISSARI--LFEHMPIK-----DLISWNSMIDGYAKIGDLVAAQQ 262
            + S ++         + +  +  L     IK     D+    S++D Y+K G   +A+ 
Sbjct: 443 KADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEM 502

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F+ MP +N+ +W+ MI  Y+ +G P+ ++ L  ++L  G   D +S+   + A + V A
Sbjct: 503 VFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAA 562

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
           L  GK +H +  R +I  D+ V+ ALIDMY+KCG L  A+ IF +M ++N++++N MIAG
Sbjct: 563 LLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAG 622

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
            G +G  EEA++ F +M+      D++ FL ++ +CSHSG+  EG  +FQ M+   G+EP
Sbjct: 623 YGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEP 682

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
           ++EHY+ +VDLL RAG L+ A + +  MP+  + ++W  LL ACR H+N+ L E+V + L
Sbjct: 683 RMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVADNL 742

Query: 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
           ++++      YV L N+Y +  MW+ A  +R  M+ R +KK  G S IE+   +  F SG
Sbjct: 743 LKMEPARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIEVKNRVDVFFSG 802

Query: 563 EIFDVQSEELELVIQSFVKTTIE 585
           +    +  E+   + S +K+ +E
Sbjct: 803 DSSSTRRIEIYKTLSS-LKSNME 824



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 141/521 (27%), Positives = 243/521 (46%), Gaps = 21/521 (4%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI-YQPNTYMHNTMIRGYT 88
           QI   +  N    +P+ L   L+ + S  +  M +A  LF ++  + N    N MI G+ 
Sbjct: 163 QIHGYIIRNMFEGDPY-LETALIGMYSSCSRPM-EAWSLFGKLENRSNIVAWNVMIGGFV 220

Query: 89  QSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF 148
           ++   +K+L  Y   K +   + + ++     AC     L  G ++H +V+KM F  D +
Sbjct: 221 ENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPY 280

Query: 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK- 207
           V   L+ MY+K G +  A+ VF+    K++   N ++  F+  G    A  ++++M    
Sbjct: 281 VCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGE 340

Query: 208 ---DAISWSIMIDGY----RKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAA 260
              D+ + S ++ G         G    A ++   M     I  ++++  Y K G    A
Sbjct: 341 TPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQ-SALLTMYYKCGSTEDA 399

Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
             +F  M ER+V +W  MI G+ Q+   K+AL LFR M  +GV+ D   +   ISA   +
Sbjct: 400 DSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGL 459

Query: 321 GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMI 380
             ++LG  IH F  +  +  D+ V  +L+DMY K G  + A  +F SM  KN++++N MI
Sbjct: 460 ENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMI 519

Query: 381 AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGI 440
           +    NG  E ++    Q+   G   D +    VL+A S      +G +   + +    I
Sbjct: 520 SCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKG-KTLHAYQIRLQI 578

Query: 441 EPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVE 500
              L+  + L+D+  + G L+ A  I E+MP + NL  W +++    +H N    E  V 
Sbjct: 579 PSDLQVENALIDMYVKCGCLKYAQLIFENMPRR-NLVTWNSMIAGYGSHGN---CEEAVR 634

Query: 501 GLVELK----ADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537
              E+K    A D   ++ L    + +GM E  L + ++MR
Sbjct: 635 LFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMR 675



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/422 (27%), Positives = 197/422 (46%), Gaps = 31/422 (7%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N+ I+   Q     +AL  +       L    +T+P +LK C  L  L  G  IH  +V 
Sbjct: 24  NSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVT 83

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG-SEIK----DLVSWNLVLRGFVECGEMG 195
           MG   D ++   LI MY KCG +G A  VF+  SE +    D+  WN V+ G+ + G   
Sbjct: 84  MGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFE 143

Query: 196 KAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIG 255
           +    F  M +   +SW +     R+  G I   R +FE  P  +     ++I  Y+   
Sbjct: 144 EGLAQFCRMQE---LSWYM---AGRQIHGYI--IRNMFEGDPYLE----TALIGMYSSCS 191

Query: 256 DLVAAQQLFNEMPER-NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
             + A  LF ++  R N+ +W++MI G+ ++G  +++L L+     +  +    S  GA 
Sbjct: 192 RPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAF 251

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
           +AC+    LD G+ +H  + +     D  V T+L+ MY K GS+++A+++F  +  K V 
Sbjct: 252 TACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVE 311

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF--- 431
             N MI+    NG   +AL  + +M+    P D      +L  CS  G    G  +    
Sbjct: 312 LRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEV 371

Query: 432 --QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA-CRN 488
             +SM+ +  I+      S L+ +  + G  E A ++  +M  +  +A WG+++   C+N
Sbjct: 372 IKRSMQSNVAIQ------SALLTMYYKCGSTEDADSVFYTMKERDVVA-WGSMIAGFCQN 424

Query: 489 HQ 490
            +
Sbjct: 425 RR 426


>gi|449502637|ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 178/545 (32%), Positives = 295/545 (54%), Gaps = 15/545 (2%)

Query: 39  DLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALS 98
           +LI + F L+ LL   +   +L    A  LFN +   +  + N+MI  Y       +A++
Sbjct: 292 NLINDLFILNALLNMYSDNGSLESSWA--LFNAVPTSDAALWNSMISSYIGFGFHAEAIA 349

Query: 99  FYVNMKRKGLLVDNYTYPFVLKACGVLM-GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMY 157
            ++ M+ + +  D  T   +L  C  L  G + G  +H   +K G   D ++ N L+ MY
Sbjct: 350 LFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMY 409

Query: 158 SKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAI--SWSIM 215
            K   +  A+ VFE     D++SWN ++  F +     KA E+F  M + +    S++I+
Sbjct: 410 VKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIV 469

Query: 216 -IDGYRKKKGDISSARILFEHMPIKDLISWN-----SMIDGYAKIGDLVAAQQLFNEMPE 269
            +  + K   D+   R +     IK+ +  N     S+ + Y   GD  AA  +F   P+
Sbjct: 470 SLLAFCKDGSDLVFGRSI-HGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQ 528

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329
           R++ SW+ +I  Y ++ N  +AL LF  M+ + + P+ ++++  +++C Q+  L LG+ +
Sbjct: 529 RDLVSWNSLISSYIKNDNAGKALLLFNHMISE-LEPNSVTIINILTSCTQLAHLPLGQCL 587

Query: 330 HVFMKRSRIT--MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
           H +  R  ++  MD  +  A I MY +CG L  A +IF ++  ++++S+N MI G GM+G
Sbjct: 588 HAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVSWNAMITGYGMHG 647

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
            G +A   FAQM  +G   +++ F  VL ACSHSGL   G ++F SM R  GI P+L HY
Sbjct: 648 RGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLTHY 707

Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
            C+VDLL R G   +A+  + SMP++P+ ++W  LL +C+   N  L E +   LVEL+ 
Sbjct: 708 GCMVDLLGRGGHFSEAIAFINSMPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEP 767

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDV 567
            + G ++LLSNIYA AG+W   ++IRK +R+R + K  G S I I   +  F + ++   
Sbjct: 768 SNPGNFILLSNIYAAAGLWSEVVQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHP 827

Query: 568 QSEEL 572
           QSE +
Sbjct: 828 QSERI 832



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 204/429 (47%), Gaps = 12/429 (2%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           +A ++F ++ + +    N +I GY      ++A+  +V MK+ GL  ++ T   +L ACG
Sbjct: 113 EASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACG 172

Query: 124 VLMGLVEGTEIHGEVVKMG-FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
            ++ L  G EIHG  ++ G F  D +V   L+G Y +   +   R VF    ++++VSWN
Sbjct: 173 EMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAVLSHR-VFSLMLVRNIVSWN 231

Query: 183 LVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDG---YRKKKGDISSARILFEH 235
            ++ GF+  G+  KA +++  M     + DA++  ++I     Y   +  +   ++  + 
Sbjct: 232 AIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKF 291

Query: 236 MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
             I DL   N++++ Y+  G L ++  LFN +P  +   W+ MI  Y   G   EA+ LF
Sbjct: 292 NLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALF 351

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDL-GKWIHVFMKRSRITMDMIVQTALIDMYMK 354
            +M  + ++ DV ++   +S C  +    + G+ +H    +S I +D  +  AL+ MY+K
Sbjct: 352 IKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVK 411

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
              +  A+ +F  M   +VIS+N MI+    + F  +A + F  M    I  +    + +
Sbjct: 412 HNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSL 471

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L  C        G R         G+E      + L ++    G+   A N+    P + 
Sbjct: 472 LAFCKDGSDLVFG-RSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQR- 529

Query: 475 NLALWGTLL 483
           +L  W +L+
Sbjct: 530 DLVSWNSLI 538



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 163/365 (44%), Gaps = 69/365 (18%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N++I+ +T+  N    LS Y  M+  G+  D+ T P VLKACG L  +  G  IH  +  
Sbjct: 29  NSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSCIRG 88

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
           +  + DV V   L+  Y KCG                                + +A +V
Sbjct: 89  LDLINDVRVGTALVDFYCKCG-------------------------------LVAEASKV 117

Query: 201 FDEMPQKDAISWSIMIDGY---------------RKKKGDISSARILFEHM--------- 236
           F EMP++D +SW+ +I GY                KK G   ++R +   +         
Sbjct: 118 FVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEMLEL 177

Query: 237 ----PIKDLISWNSMIDGYAKIG----------DLVAAQQLFNEMPERNVFSWSIMIDGY 282
                I      N + D  A +G          D V + ++F+ M  RN+ SW+ +I G+
Sbjct: 178 RLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAVLSHRVFSLMLVRNIVSWNAIITGF 237

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
              G+  +AL L+  ML +G++ D ++++  I ACA+ G L LG  +H    +  +  D+
Sbjct: 238 LNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDL 297

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
            +  AL++MY   GSL+ +  +F ++   +   +N MI+     GF  EA+  F +M  E
Sbjct: 298 FILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLE 357

Query: 403 GIPKD 407
            I +D
Sbjct: 358 RIKED 362



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/443 (23%), Positives = 202/443 (45%), Gaps = 14/443 (3%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           + R+F+ +   N    N +I G+    +  KAL  Y +M  +G+  D  T   V++AC  
Sbjct: 215 SHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAE 274

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
              L  G ++H   +K   + D+F++N L+ MYS  G +  + ++F      D   WN +
Sbjct: 275 YGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSM 334

Query: 185 LRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK- 239
           +  ++  G   +A  +F +M     ++D  + +IM+             R L  H     
Sbjct: 335 ISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSG 394

Query: 240 ---DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
              D    N+++  Y K   + AAQ +F +M   +V SW+ MI  +AQ     +A  LF 
Sbjct: 395 IELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFL 454

Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
            M    ++ +  +++  ++ C     L  G+ IH F  ++ + ++  + T+L +MY+ CG
Sbjct: 455 MMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCG 514

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
               A  +F    +++++S+N +I+    N    +AL  F  M +E  P + +  + +L 
Sbjct: 515 DERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHMISELEP-NSVTIINILT 573

Query: 417 ACSHSGLATEGYRIFQ-SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
           +C+       G  +   + +R   +E      +  + + +R G+L+ A  I  ++  + +
Sbjct: 574 SCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTR-S 632

Query: 476 LALWGTLLLACRNH---QNVTLA 495
           +  W  ++     H   ++ TLA
Sbjct: 633 IVSWNAMITGYGMHGRGRDATLA 655



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 78/144 (54%)

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W+ +I  + +  N    L  + +M   G+ PD  ++   + AC ++ A+  G  IH  ++
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSCIR 87

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
              +  D+ V TAL+D Y KCG + EA ++F  M +++++S+N +I+G       +EA+ 
Sbjct: 88  GLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVL 147

Query: 395 CFAQMETEGIPKDDLIFLGVLIAC 418
            F +M+  G+  +    + +L+AC
Sbjct: 148 LFVEMKKAGLTPNSRTVVALLLAC 171


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 175/557 (31%), Positives = 302/557 (54%), Gaps = 42/557 (7%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           + N L++L   S   +H  ++  ++T  D     F+ + +L SL + + L ++    +F+
Sbjct: 60  IHNRLLNLYAKSGEISHARKLFDEMTQRD----NFSWNAML-SLYAKSGL-VEDLRVIFD 113

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
            +   ++  +NT+I G+  +     AL  ++ M+++GL    YT+  VL AC  L+ L  
Sbjct: 114 NMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRR 173

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G +IHG ++      +VFV N L  +Y++CG                             
Sbjct: 174 GKQIHGRIIICNLGGNVFVCNALTDLYARCG----------------------------- 204

Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL----ISWNS 246
             E+ +AR +FD M  ++ ++W++MI GY K +        LF  M + +L    ++ +S
Sbjct: 205 --EIDQARRLFDRMVIRNVVTWNLMISGYLKNR-QPEKCIDLFHEMQVSNLKPDQVTASS 261

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           ++  Y + G +  A+++F E+ E++   W+IMI G AQ+G  ++AL LF EML +  RPD
Sbjct: 262 VLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPD 321

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
             ++   +S+CA++ +L  G+ +H       +  D++V +AL+DMY KCG   +A  IF 
Sbjct: 322 GYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFS 381

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
           +M  +NV+S+N MI G  +NG   EAL  +  M  E +  D + F+GVL AC H+GL  E
Sbjct: 382 TMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEE 441

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G   F SM    G+EP  +HY+C+V+L  R+G +++A++++ SM  +PN  +W T+L  C
Sbjct: 442 GKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVC 501

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
               ++   E+    L+EL   +   Y++LSN+YA  G W+    IR +M+ + +KK + 
Sbjct: 502 VMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKFSA 561

Query: 547 RSVIEIDGNIKEFVSGE 563
            S IEID  + +FV+ +
Sbjct: 562 YSWIEIDNEVHKFVADD 578



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 166/376 (44%), Gaps = 75/376 (19%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D F+ N L+ +Y+K G +  AR +F+    +D  SWN +L  + + G +   R +FD MP
Sbjct: 57  DTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMP 116

Query: 206 QKDAISWSIMIDGYR---------------KKKG-------------------DISSARI 231
            +D++S++ +I G+                +K+G                   D+   + 
Sbjct: 117 SRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQ 176

Query: 232 LFEHMPIKDL----ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN 287
           +   + I +L       N++ D YA+ G++  A++LF+ M  RNV +W++MI GY ++  
Sbjct: 177 IHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQ 236

Query: 288 PKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA 347
           P++ + LF EM    ++PD ++    + A                               
Sbjct: 237 PEKCIDLFHEMQVSNLKPDQVTASSVLGA------------------------------- 265

Query: 348 LIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407
               Y++ G +DEAR++F  + +K+ + + +MI G   NG  E+AL  F++M  E    D
Sbjct: 266 ----YIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPD 321

Query: 408 DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467
                 V+ +C+       G ++        G+   L   S LVD+  + G    A  I 
Sbjct: 322 GYTISSVVSSCAKLASLYHG-QVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIF 380

Query: 468 ESMPMKPNLALWGTLL 483
            +M  + N+  W +++
Sbjct: 381 STMQTR-NVVSWNSMI 395


>gi|90399180|emb|CAJ86042.1| H0723C07.12 [Oryza sativa Indica Group]
          Length = 886

 Score =  312 bits (799), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 173/508 (34%), Positives = 273/508 (53%), Gaps = 12/508 (2%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A  +F+ + + N      ++ G+      ++ L  +  M+  G   + +T    LKACG 
Sbjct: 254 AGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACG- 312

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
             G   G +IHG  V+ GF     V N L+ MYSK    G AR VF+    ++L +WN +
Sbjct: 313 -GGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSM 371

Query: 185 LRGFVECGEMGKAREVFDEM-----PQKDAISWSIMID-----GYRKKKGDISSARILFE 234
           + G+   G+   +  VF EM      Q D  +++ ++      G  ++   + +A  +  
Sbjct: 372 ISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRG 431

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
             P  + I   +++D Y K   L  A Q+F+ +  RN   W+ +I G+AQ G  KEA+ L
Sbjct: 432 VSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCL 491

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           FR     GVR D   +   ++  A    ++ GK +H +  ++   +D+ V  +L+DMY+K
Sbjct: 492 FRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLK 551

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG   EA R F  M  +NV+S+  MI G+G +G G EA+  F +M+ EG+  D++ +L +
Sbjct: 552 CGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLAL 611

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L ACSHSGL  E  R F  + +   + PK EHY+C+VDLL RAGEL +A  ++ SMPM+P
Sbjct: 612 LSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEP 671

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
            + +W TLL ACR H++V +   V + L+ +  D+   YV+LSNI A+AG W     IR 
Sbjct: 672 TVGVWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRG 731

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSG 562
            MR++ ++K+ G S  E+D  +  F  G
Sbjct: 732 AMRRKGLRKQGGCSWTEVDKEVHFFYGG 759



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 112/433 (25%), Positives = 210/433 (48%), Gaps = 28/433 (6%)

Query: 100 YVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSK 159
           ++ M+R+ ++ D      +L+A      L  G ++H  ++K+GF  D  + N LI MY+K
Sbjct: 194 FLPMERRRMIAD------LLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAK 247

Query: 160 CGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY 219
           CG +  A  VF+G   +++VSW  ++ GF+  GE  +   +F EM           +   
Sbjct: 248 CGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSAT 307

Query: 220 RKKKGDISSARILFEHMPIK------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
            K  G  + A +    + ++      D+++ NS++  Y+K      A+++F+ +P RN+ 
Sbjct: 308 LKACGGGTRAGVQIHGVCVRTGFEGHDVVA-NSLVVMYSKGRWTGDARRVFDVIPSRNLA 366

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQ-GVRPDVISVMGAISACAQVGALDLGKWIHVF 332
           +W+ MI GYA  G  +++L +FREM  +   +PD  +    + AC+ +GA   G  +H  
Sbjct: 367 TWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAA 426

Query: 333 MKRSRIT--MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
           M    ++   + I+  AL+D+Y+KC  L  A ++F  + ++N I +  +I G    G  +
Sbjct: 427 MAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVK 486

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF-QSMKRHCGIEPKLEHYSC 449
           EA+  F +  + G+  D  +   V+   +   L  +G ++   + K   G++  +   + 
Sbjct: 487 EAMCLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVA--NS 544

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLA-----EVVVEGLVE 504
           LVD+  + G   +A      MP + N+  W  ++     H +   A     E+  EG   
Sbjct: 545 LVDMYLKCGLTGEAGRRFREMPAR-NVVSWTAMINGVGKHGHGREAIDLFEEMQAEG--- 600

Query: 505 LKADDCGLYVLLS 517
           ++AD+     LLS
Sbjct: 601 VEADEVAYLALLS 613


>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
 gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
          Length = 442

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 151/355 (42%), Positives = 239/355 (67%), Gaps = 3/355 (0%)

Query: 208 DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
           D  + + ++D Y  K G +  AR +F+ M ++D+ +WNS+I GY++ GD+  A +LF  M
Sbjct: 44  DVYALTALVDMY-AKLGVLMLARQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLM 102

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREM-LCQGVRPDVISVMGAISACAQVGALDLG 326
           P R+V SW+ MI GY+Q+G   +AL +F +M   + VRP+ +++    SACA++GAL++G
Sbjct: 103 PSRSVVSWTTMISGYSQNGMYTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVG 162

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK-NVISYNVMIAGLGM 385
           + I  + + + +  ++ V   L++MY +CG +D AR +F  + K+ N+ S+N M+ GL +
Sbjct: 163 ERIESYARDNGLMKNLYVSNTLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAV 222

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           +G   EAL+ + QM  EGI  DD+ F+G+++AC+H GL  +G+++FQSM+ +  I PKLE
Sbjct: 223 HGRSNEALQLYDQMLGEGIEPDDVTFVGLILACTHGGLVAKGWQLFQSMETNFSIVPKLE 282

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
           HY C+VDLL RAGEL++A ++V+SMPMKP+  +WGTLL AC  H NV  AE+  E L ++
Sbjct: 283 HYGCMVDLLGRAGELQEAYDLVKSMPMKPDSVIWGTLLGACSFHSNVEFAEIAAESLFQV 342

Query: 506 KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
           +  + G YV+L NIYA A  W+   ++RK+M+  +I K  G SVIE +G I +F+
Sbjct: 343 EPWNPGNYVILCNIYASAQRWDGVAKLRKLMKGGQITKAAGYSVIEGEGEIHKFI 397



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 160/341 (46%), Gaps = 47/341 (13%)

Query: 106 KGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGC 165
           KG   +  T+ F+  AC     L+ G  IH   +K GF  DV+ +  L+ MY+K G +  
Sbjct: 4   KGCPPNELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGVLML 63

Query: 166 ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGD 225
           AR VF+   ++D+ +WN ++ G+   G+M  A E+F  MP +  +SW+ MI GY  + G 
Sbjct: 64  ARQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGY-SQNGM 122

Query: 226 ISSARILFEHMP----------------------------------------IKDLISWN 245
            + A  +F  M                                         +K+L   N
Sbjct: 123 YTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMKNLYVSN 182

Query: 246 SMIDGYAKIGDLVAAQQLFNEM-PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           ++++ YA+ G + AA+ +FNE+   RN+ SW+ M+ G A HG   EAL L+ +ML +G+ 
Sbjct: 183 TLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGIE 242

Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRS-RITMDMIVQTALIDMYMKCGSLDEARR 363
           PD ++ +G I AC   G +  G  +   M+ +  I   +     ++D+  + G L EA  
Sbjct: 243 PDDVTFVGLILACTHGGLVAKGWQLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQEAYD 302

Query: 364 IFYSMT-KKNVISYNVMIAGLGMNG---FGEEALKCFAQME 400
           +  SM  K + + +  ++     +    F E A +   Q+E
Sbjct: 303 LVKSMPMKPDSVIWGTLLGACSFHSNVEFAEIAAESLFQVE 343



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 122/270 (45%), Gaps = 19/270 (7%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           Q+  ++T  D+ T     + L+   +     +M+ A  LF  +   +     TMI GY+Q
Sbjct: 66  QVFDEMTVRDIPT----WNSLIAGYSRSG--DMEGALELFKLMPSRSVVSWTTMISGYSQ 119

Query: 90  SSNPQKALSFYVNM-KRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF 148
           +    KAL  ++ M K K +  +  T   V  AC  L  L  G  I       G + +++
Sbjct: 120 NGMYTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMKNLY 179

Query: 149 VVNGLIGMYSKCGHMGCARSVF-EGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM--- 204
           V N L+ MY++CG +  AR VF E  + ++L SWN ++ G    G   +A +++D+M   
Sbjct: 180 VSNTLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGE 239

Query: 205 -PQKDAISWSIMIDGYRKKKGDISSARILFEHMP-----IKDLISWNSMIDGYAKIGDLV 258
             + D +++  +I       G ++    LF+ M      +  L  +  M+D   + G+L 
Sbjct: 240 GIEPDDVTFVGLILAC-THGGLVAKGWQLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQ 298

Query: 259 AAQQLFNEMPER-NVFSWSIMIDGYAQHGN 287
            A  L   MP + +   W  ++   + H N
Sbjct: 299 EAYDLVKSMPMKPDSVIWGTLLGACSFHSN 328


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 166/519 (31%), Positives = 285/519 (54%), Gaps = 9/519 (1%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           M  A ++FN +  P    +N +I GY +     KAL  + +++R  L  D  +    L A
Sbjct: 290 MSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTA 349

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C V+ G +EG ++HG  VK G   ++ V N ++ MY KCG +  A ++F+  E +D VSW
Sbjct: 350 CSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSW 409

Query: 182 NLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKK----GDISSARILF 233
           N ++    +  E+ K   +F  M     + D  ++  ++     ++    G     RI+ 
Sbjct: 410 NAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVK 469

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
             M + D    ++++D Y K G L+ A+++ + + E+   SW+ +I G++     + A  
Sbjct: 470 SGMGL-DWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQR 528

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
            F +ML  GV PD  +    +  CA +  ++LGK IH  + +  +  D+ + + L+DMY 
Sbjct: 529 YFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYS 588

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCG++ ++R +F    K++ ++++ MI     +G GE+A+K F +M+   +  +  IF+ 
Sbjct: 589 KCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFIS 648

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           VL AC+H G   +G   FQ M+ H G++P +EHYSC+VDLL R+ ++ +AL ++ESM  +
Sbjct: 649 VLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVNEALKLIESMHFE 708

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
            +  +W TLL  C+   NV +AE     L++L   D   YVLL+N+YA+ GMW    +IR
Sbjct: 709 ADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYANVGMWGEVAKIR 768

Query: 534 KMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            +M+  K+KKE G S IE+   +  F+ G+    +SEE+
Sbjct: 769 SIMKNCKLKKEPGCSWIEVRDEVHTFLVGDKAHPRSEEI 807



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 196/418 (46%), Gaps = 40/418 (9%)

Query: 113 YTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG 172
           +T+  +L+ C  L  L  G + H +++   F+  ++V N L+  Y K  +M  A  VF+ 
Sbjct: 7   FTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDR 66

Query: 173 SEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARIL 232
              +D++SWN ++ G+ E G MG A+ +FD MP++D +SW+ ++  Y     +  S  I 
Sbjct: 67  MPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126

Query: 233 FEHMPIK--------------------------------------DLISWNSMIDGYAKI 254
                +K                                      D+++ ++++D Y+K 
Sbjct: 127 VRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKC 186

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
             L  A ++F EMPERN+  WS +I GY Q+    E L LF++ML  G+     +     
Sbjct: 187 KKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVF 246

Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
            +CA + A  LG  +H    +S    D I+ TA +DMY KC  + +A ++F ++      
Sbjct: 247 RSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQ 306

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434
           SYN +I G      G +AL+ F  ++   +  D++   G L ACS      EG ++   +
Sbjct: 307 SYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQL-HGL 365

Query: 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV 492
              CG+   +   + ++D+  + G L +A  I + M  +  ++ W  ++ A   ++ +
Sbjct: 366 AVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVS-WNAIIAAHEQNEEI 422



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 123/483 (25%), Positives = 229/483 (47%), Gaps = 21/483 (4%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           + N LV     S    +  ++  ++   D+I      S   M        NM  A+ LF+
Sbjct: 43  VANCLVQFYCKSSNMNYAFKVFDRMPHRDVI------SWNTMIFGYAEIGNMGFAQSLFD 96

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
            + + +    N+++  Y  +   +K++  +V M+   +  D  T+  VLKAC  +     
Sbjct: 97  TMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKACSGIEDYGL 156

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G ++H   ++MGF  DV   + L+ MYSKC  +  A  +F     ++LV W+ V+ G+V+
Sbjct: 157 GLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQ 216

Query: 191 CGEMGKAREVFDEMPQKD-AISWSIMIDGYRKKKGDISSARI---LFEHMPIKDLISWNS 246
                +  ++F +M +    +S S     +R   G +S+ ++   L  H  +K   +++S
Sbjct: 217 NDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAG-LSAFKLGTQLHGH-ALKSDFAYDS 274

Query: 247 MI-----DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
           +I     D YAK   +  A ++FN +P     S++ +I GYA+     +AL +F+ +   
Sbjct: 275 IIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRT 334

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
            +  D IS+ GA++AC+ +     G  +H    +  +  ++ V   ++DMY KCG+L EA
Sbjct: 335 YLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEA 394

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
             IF  M +++ +S+N +IA    N    + L  F  M    +  DD  +  V+ AC+  
Sbjct: 395 CTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQ 454

Query: 422 GLATEGYRIF-QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
                G  I  + +K   G++  +   S LVD+  + G L +A  I + +  K  ++ W 
Sbjct: 455 QALNYGMEIHGRIVKSGMGLDWFVG--SALVDMYGKCGMLMEAEKIHDRLEEKTTVS-WN 511

Query: 481 TLL 483
           +++
Sbjct: 512 SII 514



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 143/280 (51%), Gaps = 9/280 (3%)

Query: 222 KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDG 281
           K  +++ A  +F+ MP +D+ISWN+MI GYA+IG++  AQ LF+ MPER+V SW+ ++  
Sbjct: 53  KSSNMNYAFKVFDRMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSC 112

Query: 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341
           Y  +G  ++++ +F  M    +  D  +    + AC+ +    LG  +H    +     D
Sbjct: 113 YLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFEND 172

Query: 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401
           ++  +AL+DMY KC  LD A RIF  M ++N++ ++ +IAG   N    E LK F  M  
Sbjct: 173 VVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLK 232

Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL----VDLLSRA 457
            G+      +  V  +C  +GL+   +++   +  H  ++    + S +    +D+ ++ 
Sbjct: 233 VGMGVSQSTYASVFRSC--AGLS--AFKLGTQLHGH-ALKSDFAYDSIIGTATLDMYAKC 287

Query: 458 GELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEV 497
             +  A  +  ++P  P  +    ++   R  Q +   E+
Sbjct: 288 DRMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEI 327


>gi|449446907|ref|XP_004141212.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
          Length = 456

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 157/454 (34%), Positives = 281/454 (61%), Gaps = 2/454 (0%)

Query: 97  LSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGM 156
           +S Y  M++ G+L   +T+  VL A   +  L  G ++H  V+++GFL +  V+  L+ M
Sbjct: 1   MSLYARMQKAGILESEFTFSSVLSASARMPALYLGRQVHARVIQLGFLSNKIVLTSLMDM 60

Query: 157 YSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMI 216
           Y+KCG +  A S+F   + KD+V+W  ++RG+ + G M  A+++FD+M Q+++ SW+ M+
Sbjct: 61  YAKCGFILDAESLFFAIDDKDIVAWTSMIRGYSKLGMMDDAQDLFDKMGQRNSFSWTTMV 120

Query: 217 DGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
            GY    G++ +A+ L++ MP K+ +S  +MI GY + GD+  A+++F E+   +    +
Sbjct: 121 AGY-ANWGNMKAAKQLYDAMPEKNPVSQLAMIAGYGRCGDVAEAERIFGEILVPDSSCCA 179

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS 336
            M+  Y+Q+G  KEA+ ++++M  + +  + ++++GA+SAC Q+G +++   +   +   
Sbjct: 180 AMVACYSQNGYGKEAIEMYKQMKEKNLGTNEVALVGALSACVQLGDVEMASKLIDQVDEG 239

Query: 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF 396
                + V  ALI  + K G+++ A+  F  M  ++V++Y+ +I  L  +G  +EAL  F
Sbjct: 240 CCDRTLFVSNALIHKHSKFGNIERAQEEFNRMKDRDVVTYSTLIIALADHGKAKEALDLF 299

Query: 397 AQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456
           ++ME EGI  + + F+GVL AC+H+GL  +G + F+ M++  GIEP+  HY+C+VDLL R
Sbjct: 300 SKMEEEGIKPNQICFIGVLNACAHAGLIEQGCKYFELMRKGFGIEPQKGHYACMVDLLGR 359

Query: 457 AGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLL 516
           AGE+E A N+++    + +   WG+LL AC+ H N+ + E+  + L E++ ++ G YVLL
Sbjct: 360 AGEVEMAYNVIKG-AREIDAKTWGSLLGACKIHGNLEVGEIAAKHLFEMEPENTGNYVLL 418

Query: 517 SNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           +N YA    W  A ++R +M +R IKK  G S +
Sbjct: 419 ANTYAQMKEWNEAEKVRNVMVERGIKKFPGYSWV 452



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 88/415 (21%), Positives = 171/415 (41%), Gaps = 83/415 (20%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           Q+ A++     ++    L+ L M + +     +D AE LF  I   +     +MIRGY++
Sbjct: 37  QVHARVIQLGFLSNKIVLTSL-MDMYAKCGFILD-AESLFFAIDDKDIVAWTSMIRGYSK 94

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
                 A   +  M ++                                       + F 
Sbjct: 95  LGMMDDAQDLFDKMGQR---------------------------------------NSFS 115

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA 209
              ++  Y+  G+M  A+ +++    K+ VS   ++ G+  CG++ +A  +F E+   D+
Sbjct: 116 WTTMVAGYANWGNMKAAKQLYDAMPEKNPVSQLAMIAGYGRCGDVAEAERIFGEILVPDS 175

Query: 210 ISWSIMI-----DGYRKKK-----------------------------GDISSARILFEH 235
              + M+     +GY K+                              GD+  A  L + 
Sbjct: 176 SCCAAMVACYSQNGYGKEAIEMYKQMKEKNLGTNEVALVGALSACVQLGDVEMASKLIDQ 235

Query: 236 MP----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           +      + L   N++I  ++K G++  AQ+ FN M +R+V ++S +I   A HG  KEA
Sbjct: 236 VDEGCCDRTLFVSNALIHKHSKFGNIERAQEEFNRMKDRDVVTYSTLIIALADHGKAKEA 295

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALID 350
           L LF +M  +G++P+ I  +G ++ACA  G ++ G K+  +  K   I         ++D
Sbjct: 296 LDLFSKMEEEGIKPNQICFIGVLNACAHAGLIEQGCKYFELMRKGFGIEPQKGHYACMVD 355

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG---FGEEALKCFAQMETE 402
           +  + G ++ A  +     + +  ++  ++    ++G    GE A K   +ME E
Sbjct: 356 LLGRAGEVEMAYNVIKGAREIDAKTWGSLLGACKIHGNLEVGEIAAKHLFEMEPE 410


>gi|225425734|ref|XP_002271313.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
           mitochondrial-like [Vitis vinifera]
          Length = 597

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 198/559 (35%), Positives = 316/559 (56%), Gaps = 17/559 (3%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           L+SLL+    T+ I Q+   +    L+  PFTLS+LL S    +  + D A  +FNQI  
Sbjct: 34  LISLLESCTQTSEICQVHGSMVKTGLVNVPFTLSKLLAS----SIQDTDYAASIFNQIPS 89

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           PN +M NTM+RGY+ S +P++A   +  ++ + +++D +++   LKAC   +    G  I
Sbjct: 90  PNLFMFNTMLRGYSISHHPKQAFVVFKGLRAQQMILDQFSFIPTLKACARELAYETGQGI 149

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK-DLVSWNLVLRGFVECGE 193
           HG VV+ G      V N L+  Y  CG +G A  +F+    K DLVSWN +L G+++   
Sbjct: 150 HGVVVRSGHGLFTNVKNALLHFYCVCGRIGDAHQLFDEIPPKIDLVSWNTLLGGYLQVPH 209

Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS--ARILFEHMPIK-----DLISWNS 246
                 +F EM +K     +  I       GD+ +    +      IK     DL    +
Sbjct: 210 PTMVTCLFGEMCRKGLKFSTTTISSVLCAVGDLGNILGGVSLHGHCIKVGFCSDLNVATA 269

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
           +ID YA  G +    ++F ++P+++V  W+ +IDGYA+    +E+L L + M  + V+P+
Sbjct: 270 LIDMYANAGFIDLGHKIFYQVPKKDVVLWNCLIDGYAKSDLLQESLSLLQLMKREQVKPN 329

Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
             +++G +SACA  GA  +G  I  +++  +I +D ++ TAL+DMY KCG L++A  +F 
Sbjct: 330 SSTLVGLLSACAAAGASSVGLCISNYVEEEQIALDAVLGTALVDMYCKCGFLEKAIDVFE 389

Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
            M  K+V S+  MI+G G++G  + A+  F +ME EG   +++ FL VL ACSH G+  E
Sbjct: 390 RMEIKDVKSWTAMISGYGVHGQAKNAIMIFHRMEVEGYRPNEVTFLAVLNACSHGGMVVE 449

Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
           G    + M R  G  PK+EHY C++DLL RAG LE+A N+++S+P++ +   W  LL AC
Sbjct: 450 GISFLEKMVREYGFSPKVEHYGCMIDLLGRAGLLEEAHNLIKSLPIEGDATGWRALLAAC 509

Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           R + NV L E V   L+E+  +     +LLS+ YA AG      R+++ +++ K+ KE G
Sbjct: 510 RVYGNVDLGECVKRVLLEIFDEHPTDSILLSSTYAIAGRLPDYTRMQE-IKEEKMMKEAG 568

Query: 547 RSVIEIDG----NIKEFVS 561
            SVIE+D     +I+E+ S
Sbjct: 569 CSVIEMDSHGWEHIREYGS 587


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 192/610 (31%), Positives = 310/610 (50%), Gaps = 83/610 (13%)

Query: 44  PFTLSQLLMSLTSPNTLNMDQAERLFNQI--YQPNTYMHNTMIRGYTQSSNPQKALSFYV 101
           P + + L+ +  + + L    A   F+ +   + +T +HN +I  Y ++S+   A++ + 
Sbjct: 88  PVSATSLVAAYAAADRL--PAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFR 145

Query: 102 NMKRKG-LLVDNYTYPFVLKACGVL--MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYS 158
           ++   G L  D+Y++  +L A G L  + +    ++H  V+K G    + V N L+ +Y 
Sbjct: 146 SLLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYM 205

Query: 159 KC----------------------------------GHMGCARSVFEGSEIKDLVSWNLV 184
           KC                                  G +G ARSVFE  + K  V WN +
Sbjct: 206 KCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAM 265

Query: 185 LRGFVECGEMGKAREVFDEM-----PQKDAISWSIM--------------IDG------- 218
           + G+V  G   +A E+F  M     P  +    S++              + G       
Sbjct: 266 ISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQP 325

Query: 219 ----------------YRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQ 262
                           +  K G+I+ AR +F++M +KD++SWN+++ GY +   L  A +
Sbjct: 326 NFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVE 385

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F EMP +N  SW +M+ GY   G  ++AL LF +M  + V+P   +  GAI+AC ++GA
Sbjct: 386 VFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGA 445

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
           L  GK +H  + +           ALI MY +CG++ EA  +F  M   + +S+N MI+ 
Sbjct: 446 LKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISA 505

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
           LG +G G EAL+ F +M  EGI  D + FL VL AC+HSGL  EG+R F+SMKR  GI P
Sbjct: 506 LGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIP 565

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
             +HY+ L+DLL RAG + +A +++++MP +P  ++W  +L  CR   ++ L     + L
Sbjct: 566 GEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQL 625

Query: 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
            ++     G Y+LLSN Y+ AG W  A R+RK+MR R +KKE G S IE    +  F+ G
Sbjct: 626 FKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVG 685

Query: 563 EIFDVQSEEL 572
           +    ++ E+
Sbjct: 686 DTKHPEAHEV 695



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 219/486 (45%), Gaps = 62/486 (12%)

Query: 1   MKTLAAAKFSLKNPLVSLL---QISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSP 57
           +K+ A    S+ N LV+L    +  + T    ++L ++   D       L+   M +   
Sbjct: 186 LKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKD------DLTWTTMVVGYV 239

Query: 58  NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF 117
              ++  A  +F ++      + N MI GY  S    +A   +  M  + + +D +T+  
Sbjct: 240 RRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTS 299

Query: 118 VLKACGVLMGLVEGTEIHGEVVKM--GFLCDVF--VVNGLIGMYSKCGHMGCARSVFEGS 173
           VL AC  +     G  +HG+++++   F+ +    V N L+  YSKCG++  AR +F+  
Sbjct: 300 VLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNM 359

Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILF 233
            +KD+VSWN +L G+VE   + KA EVF+EMP K+ +SW +M+ GY    G    A  LF
Sbjct: 360 TLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGY-VHGGFAEDALKLF 418

Query: 234 EHMPIKDL---------------------------------------ISWNSMIDGYAKI 254
             M  +++                                        + N++I  YA+ 
Sbjct: 419 NKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARC 478

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
           G +  A  +F  MP  +  SW+ MI    QHG+ +EAL LF  M+ +G+ PD IS +  +
Sbjct: 479 GAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVL 538

Query: 315 SACAQVGALDLGKWIHVFMKRS-RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNV 373
           +AC   G +D G      MKR   I       T LID+  + G + EAR +  +M  +  
Sbjct: 539 TACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPT 598

Query: 374 IS-YNVMIAGLGMNG---FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR 429
            S +  +++G   +G    G  A     +M     P+ D  ++ +    S +G   +  R
Sbjct: 599 PSIWEAILSGCRTSGDMELGAHAADQLFKM----TPQHDGTYILLSNTYSAAGCWVDAAR 654

Query: 430 IFQSMK 435
           + + M+
Sbjct: 655 VRKLMR 660



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 154/360 (42%), Gaps = 48/360 (13%)

Query: 225 DISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP--ERNVFSWSIMIDGY 282
           D+ +A  LF   P    +S  S++  YA    L AA   F+ +P   R+    + +I  Y
Sbjct: 74  DLPAAATLFCADPCP--VSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAY 131

Query: 283 AQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKW--IHVFMKRSRIT 339
           A+  +   A+ +FR +L  G +RPD  S    +SA   +  + +     +H  + +S   
Sbjct: 132 ARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAG 191

Query: 340 MDMIVQTALIDMYMKCGS----------LDE------------------------ARRIF 365
             + V  AL+ +YMKC S          LDE                        AR +F
Sbjct: 192 GALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVF 251

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
             +  K  + +N MI+G   +G   EA + F +M  E +P D+  F  VL AC++ GL  
Sbjct: 252 EEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFA 311

Query: 426 EGYRIFQSMKR---HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
            G  +   + R   +   E  L   + LV   S+ G +  A  I ++M +K ++  W T+
Sbjct: 312 HGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLK-DVVSWNTI 370

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
           L     +   +  +  VE   E+   +   ++++ + Y   G  E AL++   MR   +K
Sbjct: 371 L---SGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVK 427


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 163/455 (35%), Positives = 263/455 (57%), Gaps = 26/455 (5%)

Query: 133 EIHGEVVKMGFLCDVFVVNGLI--GMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           +IH ++++ G   D F  + LI     S    +  A+ VF+     +L +WN ++R +  
Sbjct: 53  QIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYAS 112

Query: 191 CGEMGKAREVFDEMPQK-----DAISWSIMIDGYRKKKGDISSARILFEHMPIK-----D 240
                ++  +F  M  +     D  ++  +I    + +   +     F  M IK     D
Sbjct: 113 SSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGK--AFHGMVIKVLLGSD 170

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
           +   NS+I  YAK G+L    ++F   P R+V SW+ MI  + Q G P+EAL LF+EM  
Sbjct: 171 VFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMET 230

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
           Q V+P+ I+++G +SACA+    + G+W+H +++R+RI   + +  A++DMY KCGS+++
Sbjct: 231 QNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVED 290

Query: 361 ARRIFYSMTKKNVISYNVMIAG------------LGMNGFGEEALKCFAQMETEGIPKDD 408
           A+R+F  M +K+++S+  M+ G            L M+G G++A+  F++M+ + +  + 
Sbjct: 291 AKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNA 350

Query: 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468
           + F  +L ACSH GL  EG   F  M+   G+ P ++HY+C+VD+L RAG LE+A+ ++E
Sbjct: 351 VTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIE 410

Query: 469 SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528
            MPM P  ++WG LL AC  H+NV LAE     L+EL+  + G YVLLSNIYA AG W+ 
Sbjct: 411 KMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDR 470

Query: 529 ALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
              +RK+MR   +KKE G S IE+DG + EF+ G+
Sbjct: 471 VSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGD 505



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/387 (31%), Positives = 203/387 (52%), Gaps = 21/387 (5%)

Query: 3   TLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNM 62
           TL   ++   +P +SL+     T  + QI AQ+    L  +PF+ S+L+ +       ++
Sbjct: 26  TLNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSL 85

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGL-LVDNYTYPFVLKA 121
           D A+++F+QI  PN Y  NT+IR Y  SSNP ++L  ++ M  +     D +T+PF++KA
Sbjct: 86  DYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKA 145

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
              L  L  G   HG V+K+    DVF++N LI  Y+KCG +G    VF     +D+VSW
Sbjct: 146 ASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSW 205

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK---KKGDISSARILFEHMP- 237
           N ++  FV+ G   +A E+F EM  ++     I + G      KK D    R +  ++  
Sbjct: 206 NSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIER 265

Query: 238 ---IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQ---------- 284
               + L   N+M+D Y K G +  A++LF++MPE+++ SW+ M+ GYA+          
Sbjct: 266 NRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGL 325

Query: 285 --HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
             HG+ K+A+ LF +M    V+P+ ++    + AC+ VG ++ G+     M+     +  
Sbjct: 326 AMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPG 385

Query: 343 IVQTA-LIDMYMKCGSLDEARRIFYSM 368
           +   A ++D+  + G L+EA  +   M
Sbjct: 386 VKHYACMVDILGRAGLLEEAVELIEKM 412


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 175/530 (33%), Positives = 299/530 (56%), Gaps = 23/530 (4%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            A  LF+++   +    N MI GY ++    + L  +  M+   +  D  T   V+ AC 
Sbjct: 188 SARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACE 247

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
           +L     GT++H  VV+  +  ++ V N LI MY   GH   A SVF G E +D+VSW  
Sbjct: 248 LLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTT 307

Query: 184 VLRGFVE------CGEMGKAREVFDEMPQKDAISWSI-------MID-GYRKKKGDISSA 229
           ++ G V+        E  K  E+   MP +  I+  +        +D G +  +    + 
Sbjct: 308 IISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTG 367

Query: 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
            IL+       ++  NS+ID Y+K   +  A ++F+++P+++V SW+ +I+G   +    
Sbjct: 368 HILY-------VVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCF 420

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           EAL  FR+M+ +  +P+ ++++ A+SACA+VGAL  GK IH    ++ +  D  +  A++
Sbjct: 421 EALIFFRKMILKS-KPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAIL 479

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
           D+Y++CG +  A   F ++ +K+V ++N+++ G    G G   ++ F +M    I  DD+
Sbjct: 480 DLYVRCGRMRTALNQF-NLNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDV 538

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            F+ +L ACS SG+ TEG   FQ MK +  I P L+HY+C+VDLL RAG+L +A   +E 
Sbjct: 539 TFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIER 598

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           MP+KP+ A+WG LL ACR H++V L E+  + + +  A+  G Y+LL N+YAD+G W+  
Sbjct: 599 MPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQDAESIGYYILLCNLYADSGKWDEV 658

Query: 530 LRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSF 579
            ++R+ M++  +  + G S +E+ G +  F+SG+ F  Q +E+ +V++ F
Sbjct: 659 AKVRRTMKEEGLIVDPGCSWVEVKGKVHAFLSGDNFHPQMQEINVVLEGF 708



 Score =  194 bits (494), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 128/414 (30%), Positives = 216/414 (52%), Gaps = 13/414 (3%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  A  +F ++ + + +  N ++ GYT++    +AL  Y  +   G+  D YT+P VL+
Sbjct: 84  DVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSVLR 143

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           +C   M LV G E+H  VV+  F  DV VVN LI MY KCG +  AR +F+    +D +S
Sbjct: 144 SCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRIS 203

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQ----KDAISWSIMIDGYRKKKGDISSARILFEHM 236
           WN ++ G+ E  E  +  E+F  M +     D ++ + +I    +  GD      L  ++
Sbjct: 204 WNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISAC-ELLGDERLGTQLHSYV 262

Query: 237 PIK----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
                  ++  +NS+I  Y  +G    A+ +F+ M  R+V SW+ +I G   +  P +AL
Sbjct: 263 VRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKAL 322

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
             ++ M   G  PD +++   +SACA +G LD+G  +H   +R+   + ++V  +LIDMY
Sbjct: 323 ETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMY 382

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KC  +++A  IF+ +  K+VIS+  +I GL +N    EAL  F +M  +  P + +  +
Sbjct: 383 SKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKSKP-NSVTLI 441

Query: 413 GVLIACSHSGLATEGYRIF-QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
             L AC+  G    G  I   ++K   G +  L   + ++DL  R G +  ALN
Sbjct: 442 SALSACARVGALMCGKEIHAHALKAGMGFDGFLP--NAILDLYVRCGRMRTALN 493



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 116/412 (28%), Positives = 204/412 (49%), Gaps = 22/412 (5%)

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK-MGFLCDVF 148
           S N ++AL    +M+   + V+   +  +++ C    G  EG  +   V+  +  L  V 
Sbjct: 11  SGNLEQALKHLASMQEVKIPVEEDCFVALIRLCENKRGYSEGEYVWKAVLSSLVTLLSVR 70

Query: 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKD 208
           + N L+ M+ + G +G A +VF     +DL SWN+++ G+ + G   +A  ++       
Sbjct: 71  LGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHR----- 125

Query: 209 AISWS-IMIDGY------RKKKG--DISSARILFEHMPI----KDLISWNSMIDGYAKIG 255
            I W+ I  D Y      R   G  D+   R +  H+       D+   N++I  Y K G
Sbjct: 126 -ILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCG 184

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
           D+V+A+ LF++MP R+  SW+ MI GY ++    E L LF  M    + PD++++   IS
Sbjct: 185 DVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVIS 244

Query: 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS 375
           AC  +G   LG  +H ++ R+    ++ V  +LI MY+  G   EA  +F  M  ++V+S
Sbjct: 245 ACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVS 304

Query: 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMK 435
           +  +I+G   N   ++AL+ +  ME  G   D++    VL AC+  G    G ++ +  +
Sbjct: 305 WTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAE 364

Query: 436 RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
           R   I   +   S L+D+ S+   +E+AL I   +P K  ++ W +++   R
Sbjct: 365 RTGHILYVVVANS-LIDMYSKCKRIEKALEIFHQIPDKDVIS-WTSVINGLR 414


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 160/430 (37%), Positives = 261/430 (60%), Gaps = 15/430 (3%)

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKA----REVFDEMPQKDAISWSIMIDG 218
           M  A +VF      ++ +WN ++RG+ E      A    R++     + D  ++  ++  
Sbjct: 68  MSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKA 127

Query: 219 YRK----KKGD-ISSARIL--FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271
             K    ++G+ I S  I   FE +    +   NS++  YA  GD  +A ++F  M ER+
Sbjct: 128 ISKSLNVREGEAIHSVTIRNGFESL----VFVQNSLLHIYAACGDTESAYKVFELMKERD 183

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV 331
           + +W+ MI+G+A +G P EAL LFREM  +GV PD  +V+  +SA A++GAL+LG+ +HV
Sbjct: 184 LVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHV 243

Query: 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391
           ++ +  ++ +  V  +L+D+Y KCG++ EA+R+F  M+++N +S+  +I GL +NGFGEE
Sbjct: 244 YLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEE 303

Query: 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451
           AL+ F +ME +G+   ++ F+GVL ACSH G+  EG+  F+ MK  CGI P++EHY C+V
Sbjct: 304 ALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMV 363

Query: 452 DLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511
           DLLSRAG ++QA   +++MP++PN  +W TLL AC  H ++ L E+    L+ L+    G
Sbjct: 364 DLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSG 423

Query: 512 LYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEE 571
            YVLLSN+YA    W     IR+ M K  +KK  G S++E+   + EF  G+    QS++
Sbjct: 424 DYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQD 483

Query: 572 LELVIQSFVK 581
           +  +++   +
Sbjct: 484 VYALLEKITE 493



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 134/429 (31%), Positives = 210/429 (48%), Gaps = 32/429 (7%)

Query: 12  KNPL---VSLLQISKTTTHILQILAQLTTNDLIT--EPFTLSQLL---MSLTSPNTLNMD 63
           +NPL   +SLLQ   ++ H L+ +   +    ++   P     L+   +SL++P    M 
Sbjct: 14  ENPLTKCISLLQFCASSKHKLKQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAP----MS 69

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            A  +F  I+ PN +  NT+IRGY +S NP  A  FY  M    +  D +TYPF+LKA  
Sbjct: 70  YAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAIS 129

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
             + + EG  IH   ++ GF   VFV N L+ +Y+ CG    A  VFE  + +DLV+WN 
Sbjct: 130 KSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNS 189

Query: 184 VLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHM--- 236
           ++ GF   G   +A  +F EM     + D  +   ++     + G +   R +  ++   
Sbjct: 190 MINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSA-SAELGALELGRRVHVYLLKV 248

Query: 237 -PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
              K+    NS++D YAK G +  AQ++F+EM ERN  SW+ +I G A +G  +EAL LF
Sbjct: 249 GLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELF 308

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA-LIDMYMK 354
           +EM  QG+ P  I+ +G + AC+  G LD G      MK     +  I     ++D+  +
Sbjct: 309 KEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSR 368

Query: 355 CGSLDEARRIFYSM-TKKNVISYNVMIAGL---GMNGFGEEALKCFAQMETEGIPKD--D 408
            G + +A     +M  + N + +  ++      G  G GE A      +E    PK   D
Sbjct: 369 AGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLE----PKHSGD 424

Query: 409 LIFLGVLIA 417
            + L  L A
Sbjct: 425 YVLLSNLYA 433


>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
 gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
          Length = 496

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 143/341 (41%), Positives = 222/341 (65%)

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           LF+ MP++ ++++N+M+ G  + G + AA ++F+ MP  +  SW+ +IDG+ ++G   EA
Sbjct: 129 LFDTMPVRSVVTYNTMVSGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEA 188

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           +  FR ML   V PD ++++  +SACA+VGAL LG W+H  + R  +  ++ V  +LIDM
Sbjct: 189 IDCFRAMLLDSVEPDYVTLIAVVSACAEVGALGLGMWVHRLVLRQGLERNVRVANSLIDM 248

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y +CG +  A ++F+S+ K+ V+S+N MI GL  NG   EA++ F +M  +G   D +  
Sbjct: 249 YARCGQVKLAAQVFHSIRKRTVVSWNSMIVGLAANGLCTEAIELFEEMRRQGFKPDAVTL 308

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
            GVL ACSH+GL   G R +  M    GI  ++EHY C+VDLL RAG L++A+++VE+MP
Sbjct: 309 TGVLTACSHAGLTEHGLRYYDLMTTEYGIAARMEHYGCVVDLLGRAGRLDEAMHVVETMP 368

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           M+PN  + G LL  CR H ++ +AE +++ L EL       YVLLSNIYA  G W+ A +
Sbjct: 369 MRPNEVVLGALLAGCRMHGDLDMAEQLMQHLFELDPGGDANYVLLSNIYAAVGKWDGAGK 428

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           +R +M+ R +KK  G S++EIDG++ EFVS +    Q+EE+
Sbjct: 429 VRSLMKARGVKKRPGHSIVEIDGDVHEFVSSDRSHPQAEEI 469



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 138/297 (46%), Gaps = 47/297 (15%)

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMY--SKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
           +H   +K+ F   + +   L   Y  S+  H+  A  +F+   ++ +V++N ++ G +  
Sbjct: 95  LHARALKL-FPSHLLLSTCLARFYLASRLPHL--ALQLFDTMPVRSVVTYNTMVSGLMRN 151

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI----KDLIS---- 243
           G +  A EVFD MP  D +SW+ +IDG+  K G    A   F  M +     D ++    
Sbjct: 152 GLVDAAFEVFDGMPGPDKVSWTALIDGF-VKNGRHDEAIDCFRAMLLDSVEPDYVTLIAV 210

Query: 244 --------------W-----------------NSMIDGYAKIGDLVAAQQLFNEMPERNV 272
                         W                 NS+ID YA+ G +  A Q+F+ + +R V
Sbjct: 211 VSACAEVGALGLGMWVHRLVLRQGLERNVRVANSLIDMYARCGQVKLAAQVFHSIRKRTV 270

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHV 331
            SW+ MI G A +G   EA+ LF EM  QG +PD +++ G ++AC+  G  + G ++  +
Sbjct: 271 VSWNSMIVGLAANGLCTEAIELFEEMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYYDL 330

Query: 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG 387
                 I   M     ++D+  + G LDEA  +  +M  + N +    ++AG  M+G
Sbjct: 331 MTTEYGIAARMEHYGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVLGALLAGCRMHG 387



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 103/238 (43%), Gaps = 15/238 (6%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A  +F+ +  P+      +I G+ ++    +A+  +  M    +  D  T   V+ A
Sbjct: 154 VDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDSVEPDYVTLIAVVSA 213

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  +  L  G  +H  V++ G   +V V N LI MY++CG +  A  VF     + +VSW
Sbjct: 214 CAEVGALGLGMWVHRLVLRQGLERNVRVANSLIDMYARCGQVKLAAQVFHSIRKRTVVSW 273

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
           N ++ G    G   +A E+F+EM ++     ++ + G        S A +    +   DL
Sbjct: 274 NSMIVGLAANGLCTEAIELFEEMRRQGFKPDAVTLTGVLTA---CSHAGLTEHGLRYYDL 330

Query: 242 IS-----------WNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQHGN 287
           ++           +  ++D   + G L  A  +   MP R N      ++ G   HG+
Sbjct: 331 MTTEYGIAARMEHYGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVLGALLAGCRMHGD 388



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 133/305 (43%), Gaps = 41/305 (13%)

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ--GVRPDVISVMGAISACAQVGALDLGK 327
           R+V SW+  I   A+ G+   A      ML       P+ ++++  +SACA   +  L +
Sbjct: 30  RDVVSWTSTIARAARQGDLHAAAASLCAMLSSPAAPAPNDVTLLTVLSACADSPSSPLAR 89

Query: 328 WIHVFMKRSRITM---DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL- 383
            + + +    + +    +++ T L   Y+       A ++F +M  ++V++YN M++GL 
Sbjct: 90  PLALTLHARALKLFPSHLLLSTCLARFYLASRLPHLALQLFDTMPVRSVVTYNTMVSGLM 149

Query: 384 -------------GM-----------------NGFGEEALKCFAQMETEGIPKDDLIFLG 413
                        GM                 NG  +EA+ CF  M  + +  D +  + 
Sbjct: 150 RNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDSVEPDYVTLIA 209

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           V+ AC+  G    G  + + + R  G+E  +   + L+D+ +R G+++ A  +  S+  K
Sbjct: 210 VVSACAEVGALGLGMWVHRLVLRQ-GLERNVRVANSLIDMYARCGQVKLAAQVFHSI-RK 267

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLSNIYADAGMWEHALR 531
             +  W ++++    +   T A  + E +     K D   L  +L+   + AG+ EH LR
Sbjct: 268 RTVVSWNSMIVGLAANGLCTEAIELFEEMRRQGFKPDAVTLTGVLTAC-SHAGLTEHGLR 326

Query: 532 IRKMM 536
              +M
Sbjct: 327 YYDLM 331


>gi|115476932|ref|NP_001062062.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|42409025|dbj|BAD10278.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113624031|dbj|BAF23976.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|215715342|dbj|BAG95093.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640747|gb|EEE68879.1| hypothetical protein OsJ_27695 [Oryza sativa Japonica Group]
          Length = 563

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 155/433 (35%), Positives = 259/433 (59%), Gaps = 4/433 (0%)

Query: 151 NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAI 210
           N ++    + G M  ARS+F+    +++VS+  ++ G   CGE+  ARE+FD MP ++ +
Sbjct: 114 NAMLAGLVRLGSMEDARSLFDQMPERNVVSYTTMVDGLARCGEVASARELFDAMPTRNLV 173

Query: 211 SWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER 270
           SW+ MI GY      +  AR LFE MP K++++  +MI GY K GDL  A++LF+ +  +
Sbjct: 174 SWAAMISGYVDNNM-LEEARKLFEAMPEKNVVACTAMITGYCKEGDLQNARRLFDGIRAK 232

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           +V SW+ +I GY  +G  +EA  L+  ML +G++PD  +++  ++AC+ +  L  G+  H
Sbjct: 233 DVISWNAIISGYVHNGLGEEATKLYIIMLREGIKPDQATLIALLTACSSLALLRQGRSTH 292

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
             + ++ +   + +  AL+ MY KCG++DE+  +F S+  ++++S+N +IA    +G  +
Sbjct: 293 AVVIKAMLESSISICNALMTMYSKCGNVDESELVFMSLKSQDIVSWNTIIAAYAQHGRYQ 352

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
           + +  F +ME  G+  +D+ FL +L AC H+G   E  ++F  M     I P+ EHY+C+
Sbjct: 353 KVIALFHEMELCGLIPNDITFLSMLSACGHAGRVDESLKLFDLMFSKYAISPRAEHYACI 412

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
           VD+LSRAG+LE+A + ++ MP +    +WGTLL A + H NV L E+  + LV    +  
Sbjct: 413 VDILSRAGQLEKACSYIKEMPSEAEKNVWGTLLCASQTHGNVQLGELAAKMLVLSDFESS 472

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570
           G YV+LSNIYA AGMW    R+R  M+++ +KK+ G S  EI   +  FV G   D    
Sbjct: 473 GAYVMLSNIYAAAGMWGEVNRVRSQMKEKGVKKQPGHSWTEIADKVHMFVGG---DASHP 529

Query: 571 ELELVIQSFVKTT 583
           E+++++    K +
Sbjct: 530 EMDMILSELRKIS 542



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 166/343 (48%), Gaps = 41/343 (11%)

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMP 237
           LV  N  +      G++  AR VFD MP++DA+SW+ ++    +   D+ +AR LF+ MP
Sbjct: 16  LVRDNQRITALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARSLFDDMP 75

Query: 238 IKDLISWNSMIDGYAKIGDLVA-------------------------------AQQLFNE 266
            +++ISWNS+I G    GDL A                               A+ LF++
Sbjct: 76  SRNVISWNSIIAGCLAHGDLAAASAYFARAPRRNVASWNAMLAGLVRLGSMEDARSLFDQ 135

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326
           MPERNV S++ M+DG A+ G    A  LF  M  +    +++S    IS       L+  
Sbjct: 136 MPERNVVSYTTMVDGLARCGEVASARELFDAMPTR----NLVSWAAMISGYVDNNMLEEA 191

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
           + +   M    +    +  TA+I  Y K G L  ARR+F  +  K+VIS+N +I+G   N
Sbjct: 192 RKLFEAMPEKNV----VACTAMITGYCKEGDLQNARRLFDGIRAKDVISWNAIISGYVHN 247

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
           G GEEA K +  M  EGI  D    + +L ACS   L  +G R   ++     +E  +  
Sbjct: 248 GLGEEATKLYIIMLREGIKPDQATLIALLTACSSLALLRQG-RSTHAVVIKAMLESSISI 306

Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
            + L+ + S+ G ++++  +  S+  + ++  W T++ A   H
Sbjct: 307 CNALMTMYSKCGNVDESELVFMSLKSQ-DIVSWNTIIAAYAQH 348



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 111/239 (46%), Gaps = 15/239 (6%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  A RLF+ I   +    N +I GY  +   ++A   Y+ M R+G+  D  T   +L 
Sbjct: 218 DLQNARRLFDGIRAKDVISWNAIISGYVHNGLGEEATKLYIIMLREGIKPDQATLIALLT 277

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L +G   H  V+K      + + N L+ MYSKCG++  +  VF   + +D+VS
Sbjct: 278 ACSSLALLRQGRSTHAVVIKAMLESSISICNALMTMYSKCGNVDESELVFMSLKSQDIVS 337

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQ----KDAISWSIMIDGYRKKKGDISSARILFEHM 236
           WN ++  + + G   K   +F EM       + I++  M+       G +  +  LF+ M
Sbjct: 338 WNTIIAAYAQHGRYQKVIALFHEMELCGLIPNDITFLSMLSAC-GHAGRVDESLKLFDLM 396

Query: 237 PIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP---ERNVFSWSIMIDGYAQHGN 287
             K  IS     +  ++D  ++ G L  A     EMP   E+NV  W  ++     HGN
Sbjct: 397 FSKYAISPRAEHYACIVDILSRAGQLEKACSYIKEMPSEAEKNV--WGTLLCASQTHGN 453



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 140/313 (44%), Gaps = 24/313 (7%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +M+ A  LF+Q+ + N   + TM+ G  +      A   +  M  + L+           
Sbjct: 125 SMEDARSLFDQMPERNVVSYTTMVDGLARCGEVASARELFDAMPTRNLV----------S 174

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLC----DVFVVNGLIGMYSKCGHMGCARSVFEGSEIK 176
              ++ G V+   +  E  +  F      +V     +I  Y K G +  AR +F+G   K
Sbjct: 175 WAAMISGYVDNNML--EEARKLFEAMPEKNVVACTAMITGYCKEGDLQNARRLFDGIRAK 232

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEM-------PQKDAISWSIMIDGYRKKKGDISSA 229
           D++SWN ++ G+V  G   +A +++  M        Q   I+           +   S+ 
Sbjct: 233 DVISWNAIISGYVHNGLGEEATKLYIIMLREGIKPDQATLIALLTACSSLALLRQGRSTH 292

Query: 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
            ++ + M    +   N+++  Y+K G++  ++ +F  +  +++ SW+ +I  YAQHG  +
Sbjct: 293 AVVIKAMLESSISICNALMTMYSKCGNVDESELVFMSLKSQDIVSWNTIIAAYAQHGRYQ 352

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTAL 348
           + + LF EM   G+ P+ I+ +  +SAC   G +D   K   +   +  I+        +
Sbjct: 353 KVIALFHEMELCGLIPNDITFLSMLSACGHAGRVDESLKLFDLMFSKYAISPRAEHYACI 412

Query: 349 IDMYMKCGSLDEA 361
           +D+  + G L++A
Sbjct: 413 VDILSRAGQLEKA 425


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 185/584 (31%), Positives = 303/584 (51%), Gaps = 73/584 (12%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +++A ++F+ I   ++    T+I GY Q    + A+  +V+M +  +L   +T   VL +
Sbjct: 57  LEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLAS 116

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCG-------------------- 161
           C        G ++H  VVK+G    V V N L+ MY+K G                    
Sbjct: 117 CAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSW 176

Query: 162 ------HMGCAR-----SVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM------ 204
                 HM C R     + FE    +D+VSWN ++ G  + G   +A + F  +      
Sbjct: 177 NAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSL 236

Query: 205 -PQK-------------DAISWSIMIDGY-------------------RKKKGDISSARI 231
            P +             + +S+   I GY                     K G +  AR 
Sbjct: 237 KPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARR 296

Query: 232 LFEHMPIKDL--ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
           + E   I DL  I++ ++++GY K+GD+  A+Q+FN + + +V +W+ MI GY Q+G   
Sbjct: 297 IIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNN 356

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           +A+ +F+ M+ +G RP+  ++   +SA + V +L+ GK IH    RS   +   V  AL 
Sbjct: 357 DAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALT 416

Query: 350 DMYMKCGSLDEARRIFYSMTK-KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD 408
            MY K GS++ AR++F  + + ++ +S+  MI  L  +G GEEA++ F QM T GI  D 
Sbjct: 417 TMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDH 476

Query: 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468
           + ++GVL AC+H GL  +G   F  MK    I+P L HY+C+VDL  RAG L++A   VE
Sbjct: 477 ITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVE 536

Query: 469 SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528
           +MPM+P++  WG+LL +C+ ++NV LA+V  E L+ ++ ++ G Y  L+N+Y+  G W+ 
Sbjct: 537 NMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDD 596

Query: 529 ALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           A +IRK+M+ R +KKE G S ++I      F   +    Q +E+
Sbjct: 597 AAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEI 640



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/456 (24%), Positives = 195/456 (42%), Gaps = 106/456 (23%)

Query: 138 VVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKA 197
           +VK+G    V+++N L+ +Y+K G    A  +F    +K   SWN +L G+ + G++ KA
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60

Query: 198 REVFDEMPQKDAISWSIMIDGYRKKKG---------DISSARILFEHMPIKDLIS----- 243
            +VFD +P +D++SW+ +I GY +            D+   ++L     + ++++     
Sbjct: 61  HQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAAT 120

Query: 244 ------------------------WNSMIDGYAKIGDLVAAQQLFNEM------------ 267
                                    NS+++ YAK GDL  A+ +F+ M            
Sbjct: 121 GSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMI 180

Query: 268 -------------------PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ-GVRPDV 307
                               ER++ SW+ MI G  QHG   EAL  F  +L    ++PD 
Sbjct: 181 SLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDR 240

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRS--------------------------RI--- 338
            S+  A+SACA +  L  GK IH ++ R+                          RI   
Sbjct: 241 FSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQ 300

Query: 339 ----TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
                +D+I  TAL++ Y+K G +  AR+IF S+   +V+++  MI G   NG   +A++
Sbjct: 301 SGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIE 360

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC-GIEPKLEHYSCLVDL 453
            F  M +EG   +      +L A S       G +I  S  R    + P +   + L  +
Sbjct: 361 VFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVG--NALTTM 418

Query: 454 LSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
            ++AG +  A  +   +    +   W ++++A   H
Sbjct: 419 YAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQH 454


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 175/547 (31%), Positives = 281/547 (51%), Gaps = 49/547 (8%)

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSS--NPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           D+A  LF  I  P+   +N ++    +    +   AL F   M     +++ Y++   L 
Sbjct: 100 DEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALS 159

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC     L  G ++HG V +     DV +   L+ MY+KC     AR VF+    +++VS
Sbjct: 160 ACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVS 219

Query: 181 WNLVLRGFVECGEMGKA-----------------------------------REVFDEMP 205
           WN ++  + + G +G+A                                   R+V   M 
Sbjct: 220 WNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMV 279

Query: 206 QKDAISWSI-----MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAA 260
           ++D +   +     ++D Y  K G    AR +F+ MP + ++S  S++ GYAK  ++  A
Sbjct: 280 KRDRLRDDMVLNNALVDMY-AKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDA 338

Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
           Q +F++M E+NV +W+++I  YAQ+G  +EA+ LF ++    + P   +    ++AC  +
Sbjct: 339 QVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNI 398

Query: 321 GALDLGKWIHVFMKRSRITMD------MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
             L LG+  HV + +     D      + V  +L+DMY+K GS+D+  ++F  M  ++ +
Sbjct: 399 AVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNV 458

Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434
           S+N MI G   NG  ++AL  F +M       D +  +GVL AC HSGL  EG R F  M
Sbjct: 459 SWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFM 518

Query: 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTL 494
               GI P  +HY+C+VDLL RAG L++A  +++ MP +P+  LW +LL ACR H+NV L
Sbjct: 519 TEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVEL 578

Query: 495 AEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDG 554
            E     L EL  ++ G YVLLSN+YA+ G W    R+R+ M+ R + K+ G S IEI  
Sbjct: 579 GERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEIGS 638

Query: 555 NIKEFVS 561
            +  F++
Sbjct: 639 KMNVFLA 645



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/433 (28%), Positives = 195/433 (45%), Gaps = 90/433 (20%)

Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
           HG V+K     + F++N L+  Y++ G +  AR VF+G  +++  S+N +L  +   G  
Sbjct: 40  HGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRP 99

Query: 195 GKAREVFDEMPQKDAISWSIMIDGY-RKKKGDISSARILFEHMPIKDLI----SWNS--- 246
            +AR +F+ +P  D  S++ ++    R  +G    A      M   D +    S+ S   
Sbjct: 100 DEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALS 159

Query: 247 --------------------------------MIDGYAKIGDLVAAQQLFNEMPERNVFS 274
                                           ++D YAK    V A+++F+ MPERNV S
Sbjct: 160 ACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVS 219

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM- 333
           W+ +I  Y Q+G   EAL LF EM+  G  PD +++   +SACA + A   G+ +H  M 
Sbjct: 220 WNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMV 279

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS-------------------------- 367
           KR R+  DM++  AL+DMY KCG   EAR IF S                          
Sbjct: 280 KRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQ 339

Query: 368 -----MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC---- 418
                M +KNVI++NV+IA    NG  EEA++ F Q++ + I      +  VL AC    
Sbjct: 340 VVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIA 399

Query: 419 -------SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
                  +H  +  EG+R         G E  +   + LVD+  + G ++    + E M 
Sbjct: 400 VLQLGQQAHVHVLKEGFRF------DFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMA 453

Query: 472 MKPNLALWGTLLL 484
            + N++ W  +++
Sbjct: 454 ARDNVS-WNAMIV 465



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 151/347 (43%), Gaps = 41/347 (11%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           L N LV +      T     I   + +  +++E   L+    S       N++ A+ +F+
Sbjct: 290 LNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSA------NVEDAQVVFS 343

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
           Q+ + N    N +I  Y Q+   ++A+  +V +KR  +   +YTY  VL ACG +  L  
Sbjct: 344 QMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQL 403

Query: 131 GTEIHGEVVKMGFL------CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           G + H  V+K GF        DVFV N L+ MY K G +     VFE    +D VSWN +
Sbjct: 404 GQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAM 463

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGD---ISSARILFEHM----- 236
           + G+ + G    A  +F+ M   +    S+ + G     G    +   R  F  M     
Sbjct: 464 IVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHG 523

Query: 237 --PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN----PK 289
             P +D   +  M+D   + G L  A++L  +MP E +   W+ ++     H N     +
Sbjct: 524 ITPSRD--HYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGER 581

Query: 290 EALYLFREMLCQGVRPDV-ISVMGAISACAQVGALDLGKWIHVFMKR 335
            A  LF E+  +   P V +S M A          ++GKW  VF  R
Sbjct: 582 TAGRLF-ELDPENSGPYVLLSNMYA----------EMGKWADVFRVR 617


>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Vitis vinifera]
          Length = 573

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 149/393 (37%), Positives = 247/393 (62%), Gaps = 13/393 (3%)

Query: 198 REVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDL 257
           R  F++ P    +  + ++D Y +   D+ SAR+LF+ M  ++++SW +MI GY ++G +
Sbjct: 183 RSGFEQYP----VVQTALLDAYLRFWSDVESARLLFDEMTERNVVSWTAMISGYTRLGQI 238

Query: 258 VAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC-------QGVRPDVISV 310
             A  LF EMPER+V SW+ +I GY Q+G   EAL LFR M+        QG RP+ ++ 
Sbjct: 239 GNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQVTA 298

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
           + ++SAC   G L LGKWIH ++ R+ + +D  V  AL+DMY KCG L EARR+F    +
Sbjct: 299 VCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVSNALVDMYGKCGCLKEARRVFDRTLE 358

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMET--EGIPKDDLIFLGVLIACSHSGLATEGY 428
           +++ S+N MI  L ++G  + A+  F +M T   G+  D++ F+G+L AC+H GL  +G+
Sbjct: 359 RSLTSWNSMINCLALHGQSQNAISVFEEMMTCGSGVKPDEVTFIGLLNACTHGGLVEKGW 418

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
             F+ M ++ GIEP++EHY CLVDLL RAG+ E+A+ +V  M ++P+  +WG+LL  C+ 
Sbjct: 419 LYFELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGMRIEPDEVIWGSLLNGCKI 478

Query: 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRS 548
           H +  LAE  ++ L+++  ++ G  ++L+NIY + G W+   ++RK+++++   K  G S
Sbjct: 479 HGHTDLAEFSIKKLIDMDPNNGGYGIMLANIYGELGKWDEVRKVRKVLKEQNAHKTPGCS 538

Query: 549 VIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
            IEID  + +F S +    ++EE+   ++S + 
Sbjct: 539 WIEIDNQVHQFYSVDKTHPRTEEIYNTLESLIS 571



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 192/413 (46%), Gaps = 55/413 (13%)

Query: 8   KFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAER 67
           + +L N +++LL+      H+ Q+ A L T       F   +LL   T   + N+  A  
Sbjct: 51  QLNLNNSVLALLERCIHLNHLKQLQAFLITLGHAQTHFYAFKLLRFCTLALS-NLSYARF 109

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNM-KRKGLLVDNYTYPFVLKACGVLM 126
           +F+ +  PN Y++  MI  Y   S+   AL  Y NM +R+    +++ YP VLK+C  ++
Sbjct: 110 IFDHVESPNVYLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVLKSCTQVV 169

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSK-CGHMGCARSVFEGSEIKDLVSWNLVL 185
           G      +H +V++ GF     V   L+  Y +    +  AR +F+    +++VSW  ++
Sbjct: 170 GPGSARMVHCQVLRSGFEQYPVVQTALLDAYLRFWSDVESARLLFDEMTERNVVSWTAMI 229

Query: 186 RGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW- 244
            G+   G++G A  +F+EMP++D  SW+ +I GY  + G    A  LF  M   +  +W 
Sbjct: 230 SGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGY-TQNGLFMEALSLFRRMIAVEAGAWG 288

Query: 245 ---------------------------------------------NSMIDGYAKIGDLVA 259
                                                        N+++D Y K G L  
Sbjct: 289 QGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVSNALVDMYGKCGCLKE 348

Query: 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC--QGVRPDVISVMGAISAC 317
           A+++F+   ER++ SW+ MI+  A HG  + A+ +F EM+    GV+PD ++ +G ++AC
Sbjct: 349 ARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEMMTCGSGVKPDEVTFIGLLNAC 408

Query: 318 AQVGALDLGKWIHVFMKRSRITMDMIVQT--ALIDMYMKCGSLDEARRIFYSM 368
              G ++ G W++  +      ++  ++    L+D+  + G  +EA  +   M
Sbjct: 409 THGGLVEKG-WLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGM 460



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 6/183 (3%)

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML-CQGVRPDVISVMG 312
           + +L  A+ +F+ +   NV+ ++ MI  YA H +   AL L+R M+  +   P+      
Sbjct: 101 LSNLSYARFIFDHVESPNVYLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPH 160

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS-LDEARRIFYSMTKK 371
            + +C QV      + +H  + RS      +VQTAL+D Y++  S ++ AR +F  MT++
Sbjct: 161 VLKSCTQVVGPGSARMVHCQVLRSGFEQYPVVQTALLDAYLRFWSDVESARLLFDEMTER 220

Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
           NV+S+  MI+G    G    A+  F +M    +P  + +  G     + +GL  E   +F
Sbjct: 221 NVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGY----TQNGLFMEALSLF 276

Query: 432 QSM 434
           + M
Sbjct: 277 RRM 279



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 131/322 (40%), Gaps = 50/322 (15%)

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKR-------KGLLVDNYTYPFVLK 120
           LF ++ + +    N +I GYTQ+    +ALS +  M         +G   +  T    L 
Sbjct: 244 LFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLS 303

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           ACG    L  G  IHG V + G   D FV N L+ MY KCG +  AR VF+ +  + L S
Sbjct: 304 ACGHTGMLRLGKWIHGYVYRNGLGLDSFVSNALVDMYGKCGCLKEARRVFDRTLERSLTS 363

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKD 240
           WN ++      G+   A  VF+EM          M  G   K  +++   +L        
Sbjct: 364 WNSMINCLALHGQSQNAISVFEEM----------MTCGSGVKPDEVTFIGLL-------- 405

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERN------VFSWSIMIDGYAQHGNPKEALYL 294
                         G LV    L+ E+  +N      +  +  ++D   + G  +EA+ +
Sbjct: 406 ---------NACTHGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEV 456

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI---VQTALIDM 351
            R M    + PD +     ++ C   G  DL +    F  +  I MD         L ++
Sbjct: 457 VRGMR---IEPDEVIWGSLLNGCKIHGHTDLAE----FSIKKLIDMDPNNGGYGIMLANI 509

Query: 352 YMKCGSLDEARRIFYSMTKKNV 373
           Y + G  DE R++   + ++N 
Sbjct: 510 YGELGKWDEVRKVRKVLKEQNA 531



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 155/376 (41%), Gaps = 80/376 (21%)

Query: 225 DISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM-----PERNVFSWSIMI 279
           ++S AR +F+H+   ++  + +MI  YA   D  +A  L+  M     P  N F +  ++
Sbjct: 103 NLSYARFIFDHVESPNVYLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVL 162

Query: 280 DGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD--LGKWIHVFMKRSR 337
               Q   P  A    R + CQ +R              Q   LD  L  W  V  + +R
Sbjct: 163 KSCTQVVGPGSA----RMVHCQVLRSGFEQY-----PVVQTALLDAYLRFWSDV--ESAR 211

Query: 338 ITMDMIVQ------TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391
           +  D + +      TA+I  Y + G +  A  +F  M +++V S+N +IAG   NG   E
Sbjct: 212 LLFDEMTERNVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFME 271

Query: 392 ALKCFAQMET-------EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRH------- 437
           AL  F +M         +G   + +  +  L AC H+G+   G  I   + R+       
Sbjct: 272 ALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSF 331

Query: 438 -----------CG------------IEPKLEHYSCLVDLLSRAGELEQALNIVESM---- 470
                      CG            +E  L  ++ +++ L+  G+ + A+++ E M    
Sbjct: 332 VSNALVDMYGKCGCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEMMTCG 391

Query: 471 -PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLV--ELKADDCGL------YVLLSNIYA 521
             +KP+   +  LL AC      T   +V +G +  EL   + G+      Y  L ++  
Sbjct: 392 SGVKPDEVTFIGLLNAC------THGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLG 445

Query: 522 DAGMWEHALRIRKMMR 537
            AG +E A+ + + MR
Sbjct: 446 RAGQFEEAMEVVRGMR 461


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 179/533 (33%), Positives = 298/533 (55%), Gaps = 11/533 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A  +F+++   +    N MI GY ++    + L  +  M +  +  D  T   V+ 
Sbjct: 257 DVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVIT 316

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC +L     G +IHG V++  F  D  + N LI MYS  G +  A +VF  +E +DLVS
Sbjct: 317 ACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVS 376

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHM 236
           W  ++ G+  C    KA E +  M  +    D I+ +I++        ++     L E  
Sbjct: 377 WTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSAC-SCLCNLDMGMNLHEVA 435

Query: 237 PIKDLISW----NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
             K L+S+    NS+ID YAK   +  A ++F+   E+N+ SW+ +I G   +    EAL
Sbjct: 436 KQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEAL 495

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
           + FREM+ + ++P+ ++++  +SACA++GAL  GK IH    R+ ++ D  +  A++DMY
Sbjct: 496 FFFREMI-RRLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMY 554

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
           ++CG ++ A + F+S+  + V S+N+++ G    G G  A + F +M    +  +++ F+
Sbjct: 555 VRCGRMEYAWKQFFSVDHE-VTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFI 613

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            +L ACS SG+  EG   F SMK    I P L+HY+C+VDLL R+G+LE+A   ++ MPM
Sbjct: 614 SILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPM 673

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           KP+ A+WG LL +CR H +V L E+  E + +      G Y+LLSN+YAD G W+    +
Sbjct: 674 KPDPAVWGALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAEV 733

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
           RKMMR+  +  + G S +E+ G +  F+S + F  Q +E+  +++ F K   E
Sbjct: 734 RKMMRQNGLIVDPGCSWVEVKGTVHAFLSSDNFHPQIKEINALLERFYKKMKE 786



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 132/411 (32%), Positives = 214/411 (52%), Gaps = 11/411 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N+  A  +F ++ + N +  N ++ GY ++    +AL  Y  M   G+  D YT+P VL+
Sbjct: 156 NLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLR 215

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            CG +  LV G EIH  V++ GF  DV VVN LI MY KCG +  AR VF+    +D +S
Sbjct: 216 TCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRIS 275

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQ----KDAISWSIMIDGYRKKKGDISSARILFEHM 236
           WN ++ G+ E G   +   +F  M +     D ++ + +I    +  GD    R +  ++
Sbjct: 276 WNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITAC-ELLGDDRLGRQIHGYV 334

Query: 237 PI----KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
                 +D    NS+I  Y+ +G +  A+ +F+    R++ SW+ MI GY     P++AL
Sbjct: 335 LRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKAL 394

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
             ++ M  +G+ PD I++   +SAC+ +  LD+G  +H   K+  +    IV  +LIDMY
Sbjct: 395 ETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMY 454

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KC  +D+A  IF+S  +KN++S+  +I GL +N    EAL  F +M     P + +  +
Sbjct: 455 AKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIRRLKP-NSVTLV 513

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
            VL AC+  G  T G  I     R  G+       + ++D+  R G +E A
Sbjct: 514 CVLSACARIGALTCGKEIHAHALR-TGVSFDGFMPNAILDMYVRCGRMEYA 563



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 132/528 (25%), Positives = 249/528 (47%), Gaps = 41/528 (7%)

Query: 73  YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
           + PN++++   + G     N  +A+S+  +M    + V++  Y  +++ C       EG+
Sbjct: 72  HNPNSHIYQLCLLG-----NLDRAMSYLDSMHELRIPVEDDAYVALIRLCEWKRARKEGS 126

Query: 133 EIHGEV-VKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
            ++  V + M  L  + + N L+ M+ + G++  A  VF   E ++L SWN+++ G+ + 
Sbjct: 127 RVYSYVSISMSHL-SLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKA 185

Query: 192 GEMGKAREVFDEM----PQKDAISWSI-------MIDGYRKKKGDISSARILFEHMPIKD 240
           G   +A +++  M     + D  ++         M +  R ++  +   R  FE     D
Sbjct: 186 GLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFE----SD 241

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
           +   N++I  Y K GD+  A+ +F++MP R+  SW+ MI GY ++G   E L LF  M+ 
Sbjct: 242 VDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIK 301

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
             V PD++++   I+AC  +G   LG+ IH ++ R+    D  +  +LI MY   G ++E
Sbjct: 302 YPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEE 361

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           A  +F     ++++S+  MI+G       ++AL+ +  ME EGI  D++    VL ACS 
Sbjct: 362 AETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSC 421

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
                 G  + +  K+   +   +   S L+D+ ++   +++AL I  S  ++ N+  W 
Sbjct: 422 LCNLDMGMNLHEVAKQKGLVSYSIVANS-LIDMYAKCKCIDKALEIFHST-LEKNIVSWT 479

Query: 481 TLLLACR-NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
           +++L  R N++         E +  LK +   L  +LS             RI  +   +
Sbjct: 480 SIILGLRINNRCFEALFFFREMIRRLKPNSVTLVCVLSA----------CARIGALTCGK 529

Query: 540 KIKKETGRSVIEIDGNIKEFVSGEIFD--VQSEELELVIQSFVKTTIE 585
           +I     R+ +  DG    F+   I D  V+   +E   + F     E
Sbjct: 530 EIHAHALRTGVSFDG----FMPNAILDMYVRCGRMEYAWKQFFSVDHE 573


>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 538

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 153/368 (41%), Positives = 237/368 (64%), Gaps = 7/368 (1%)

Query: 226 ISSARILFEHMPI--KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
           IS AR LF+ +P+  +++  WN+M+  YAKI D+  AQ LF+ MP+RN+ SW+ +I GYA
Sbjct: 160 ISDARKLFDGIPLTARNVALWNAMLTSYAKICDMPNAQHLFDSMPQRNLISWTALISGYA 219

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
               P +A+ +FR M  Q V PD I+++  +SACAQ+GAL+LG+WI  ++    +  ++ 
Sbjct: 220 HINRPHQAIAIFRTMQLQNVVPDEITLLAVLSACAQLGALELGEWIRNYIDIHGLHRNVP 279

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           +  ALIDMY K G++  A  IF SM  K ++++  MIAGL ++G G +AL+ F++ME + 
Sbjct: 280 LHNALIDMYAKSGNIKRALLIFESMKHKTIVTWTTMIAGLALHGLGTQALEMFSRMERDR 339

Query: 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
           +  +++ F+ VL ACSH GL       F +M+    I+PK+EHY C++DLL RAG L++A
Sbjct: 340 VKPNEITFIAVLSACSHVGLVQLARSFFTNMRSRYTIQPKIEHYGCMIDLLGRAGYLQEA 399

Query: 464 LNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA 523
             +++ MP +PN A+WG+LL A   H +  L E  ++ L+EL+ ++ G Y LLSNIYA  
Sbjct: 400 QQLLQQMPFEPNAAIWGSLLAASYTHGDAMLGERTLKHLIELEPNNSGNYALLSNIYASL 459

Query: 524 GMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI-----QS 578
           G W+ +  +RKMMR R +KK  G S IE++  + EF++GE    Q +E+  VI     QS
Sbjct: 460 GRWKASRIVRKMMRDRGVKKIPGGSFIEVNNRVNEFIAGETSHPQFDEIYEVIYKINEQS 519

Query: 579 FVKTTIER 586
            +  ++E+
Sbjct: 520 RLSESLEK 527



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 183/384 (47%), Gaps = 51/384 (13%)

Query: 65  AERLFNQI-YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           A  LF  + + PN +++NT+IR  + S  P  ++  +  ++   L  D+Y++PF LKA  
Sbjct: 62  AYSLFTSLTHPPNIFLYNTIIRALSLSPQPSLSIFLFNRIQSARLRPDSYSFPFALKAVI 121

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI--KDLVSW 181
            L     G + H + ++ G    + V+  LI MYS   H+  AR +F+G  +  +++  W
Sbjct: 122 RLSATKTGLQFHSQAIRFGLHSHLHVLVSLIRMYSS-SHISDARKLFDGIPLTARNVALW 180

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
           N +L  + +  +M  A+ +FD MPQ++ ISW+ +I GY         A  +F  M ++++
Sbjct: 181 NAMLTSYAKICDMPNAQHLFDSMPQRNLISWTALISGY-AHINRPHQAIAIFRTMQLQNV 239

Query: 242 IS----------------------W-----------------NSMIDGYAKIGDLVAAQQ 262
           +                       W                 N++ID YAK G++  A  
Sbjct: 240 VPDEITLLAVLSACAQLGALELGEWIRNYIDIHGLHRNVPLHNALIDMYAKSGNIKRALL 299

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F  M  + + +W+ MI G A HG   +AL +F  M    V+P+ I+ +  +SAC+ VG 
Sbjct: 300 IFESMKHKTIVTWTTMIAGLALHGLGTQALEMFSRMERDRVKPNEITFIAVLSACSHVGL 359

Query: 323 LDLGKWIHVFMKRSRITMDMIVQT--ALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVM 379
           + L +     M RSR T+   ++    +ID+  + G L EA+++   M  + N   +  +
Sbjct: 360 VQLARSFFTNM-RSRYTIQPKIEHYGCMIDLLGRAGYLQEAQQLLQQMPFEPNAAIWGSL 418

Query: 380 IAGLGMNG---FGEEALKCFAQME 400
           +A    +G    GE  LK   ++E
Sbjct: 419 LAASYTHGDAMLGERTLKHLIELE 442



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 109/237 (45%), Gaps = 11/237 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +M  A+ LF+ + Q N      +I GY   + P +A++ +  M+ + ++ D  T   VL 
Sbjct: 192 DMPNAQHLFDSMPQRNLISWTALISGYAHINRPHQAIAIFRTMQLQNVVPDEITLLAVLS 251

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L  G  I   +   G   +V + N LI MY+K G++  A  +FE  + K +V+
Sbjct: 252 ACAQLGALELGEWIRNYIDIHGLHRNVPLHNALIDMYAKSGNIKRALLIFESMKHKTIVT 311

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWS----IMIDGYRKKKGDISSARILFEHM 236
           W  ++ G    G   +A E+F  M ++D +  +    I +       G +  AR  F +M
Sbjct: 312 WTTMIAGLALHGLGTQALEMFSRM-ERDRVKPNEITFIAVLSACSHVGLVQLARSFFTNM 370

Query: 237 PIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
             +  I      +  MID   + G L  AQQL  +MP E N   W  ++     HG+
Sbjct: 371 RSRYTIQPKIEHYGCMIDLLGRAGYLQEAQQLLQQMPFEPNAAIWGSLLAASYTHGD 427


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  311 bits (798), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 176/499 (35%), Positives = 277/499 (55%), Gaps = 9/499 (1%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N ++  ++++  P  AL  +  +       ++ T+   L AC  L  L     +      
Sbjct: 77  NGLLSAHSRAGAPGAALRVFRALPSSAR-PNSTTFTLTLTACARLGDLDAAESVRVRAFA 135

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
            G+  DVFV + L+ +YS+CG M  A  VF+G   KD V+W+ ++ GFV  G   +A  +
Sbjct: 136 AGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAM 195

Query: 201 FDEMPQKDAISWSIMIDGYRKKKGDISSARI-------LFEHMPIKDLISWNSMIDGYAK 253
           +  M +       +++ G  +      +ARI       L  H    D+++  S++  YAK
Sbjct: 196 YSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAK 255

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313
            G L  A Q+F  MP RN  +WS +I G+AQ+G   EAL LFRE+   G++P   +++ A
Sbjct: 256 NGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVSA 315

Query: 314 ISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNV 373
           + ACA VG L LGK IH F+ R R+    I+ TA++DMY KCGSL+ AR++F  ++ +++
Sbjct: 316 LLACASVGFLKLGKSIHGFILR-RLEWQCILGTAVLDMYSKCGSLESARKLFNKLSSRDL 374

Query: 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433
           + +N +IA  G +G G +AL  F ++   GI  D   F  +L A SHSGL  EG   F  
Sbjct: 375 VLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDR 434

Query: 434 MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT 493
           M +  GIEP  +HY C+VDLL+R+G +E+A +++ SM  +P +A+W  LL  C N++ + 
Sbjct: 435 MIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLSGCLNNKKLE 494

Query: 494 LAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEID 553
           L E + + ++EL+ +D G+  L+SN+YA A  W+    IRK+M+    KK  G S+IE+ 
Sbjct: 495 LGETIAKKILELRPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVK 554

Query: 554 GNIKEFVSGEIFDVQSEEL 572
           G    FV  +    Q  E+
Sbjct: 555 GTRHAFVMEDQSHPQHREI 573



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 177/370 (47%), Gaps = 29/370 (7%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           M++A R+F+ + + +    +TM+ G+  +  P +AL+ Y  M+  G+  D      V++A
Sbjct: 158 MEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQA 217

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C        G  +HG +++     DV     L+ MY+K GH+  A  VF     ++ V+W
Sbjct: 218 CMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTW 277

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAI---SWSIMID-------GYRKKKGDISSARI 231
           + ++ GF + G   +A ++F E+ Q D +   SW+++         G+ K    I     
Sbjct: 278 SALISGFAQNGRAVEALDLFREL-QADGLQPCSWALVSALLACASVGFLKLGKSI----- 331

Query: 232 LFEHMPIKDLISW-----NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
              H  I   + W      +++D Y+K G L +A++LFN++  R++  W+ +I     HG
Sbjct: 332 ---HGFILRRLEWQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHG 388

Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK-WIHVFMKRSRITMDMIVQ 345
              +AL LF+E+   G++PD  +    +SA +  G ++ GK W    +K   I       
Sbjct: 389 CGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHY 448

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
             ++D+  + G ++EA  +  SM  +  I+  V++    +N    E  +  A+   E  P
Sbjct: 449 VCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLSGCLNNKKLELGETIAKKILELRP 508

Query: 406 KDDLIFLGVL 415
           +D    +GVL
Sbjct: 509 ED----IGVL 514



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 114/209 (54%), Gaps = 3/209 (1%)

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           W+ ++  +++ G P  AL +FR  L    RP+  +    ++ACA++G LD  + + V   
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRA-LPSSARPNSTTFTLTLTACARLGDLDAAESVRVRAF 134

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
            +    D+ V +AL+ +Y +CG+++EA R+F  M +K+ ++++ M+AG    G   EAL 
Sbjct: 135 AAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALA 194

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454
            +++M   G+  D+++ +GV+ AC  +G A  G  +   + RHC +   +   + LV + 
Sbjct: 195 MYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHC-MRMDVVTTTSLVSMY 253

Query: 455 SRAGELEQALNIVESMPMKPNLALWGTLL 483
           ++ G L+ A  +   MP + N   W  L+
Sbjct: 254 AKNGHLDVACQVFRMMPYR-NDVTWSALI 281



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 127/280 (45%), Gaps = 25/280 (8%)

Query: 51  LMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV 110
           L+S+ + N  ++D A ++F  +   N    + +I G+ Q+    +AL  +  ++  GL  
Sbjct: 249 LVSMYAKNG-HLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQP 307

Query: 111 DNYTYPFVLKACGVLMGLVEGTEIHGEVV-KMGFLCDVFVVNGLIGMYSKCGHMGCARSV 169
            ++     L AC  +  L  G  IHG ++ ++ + C   +   ++ MYSKCG +  AR +
Sbjct: 308 CSWALVSALLACASVGFLKLGKSIHGFILRRLEWQC--ILGTAVLDMYSKCGSLESARKL 365

Query: 170 FEGSEIKDLVSWNLVLRGFVECGEMG---KAREVFDEMPQK----DAISWSIMIDGYRKK 222
           F     +DLV WN ++     CG  G    A  +F E+ +     D  +++ ++      
Sbjct: 366 FNKLSSRDLVLWNAII---ACCGTHGCGHDALALFQELNETGIKPDHATFASLLSAL-SH 421

Query: 223 KGDISSARILFEHMPIKDL------ISWNSMIDGYAKIGDLVAAQQLFNEM-PERNVFSW 275
            G +   +  F+ M IK+         +  ++D  A+ G +  A  +   M  E  +  W
Sbjct: 422 SGLVEEGKFWFDRM-IKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAIW 480

Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
            I++ G   +   +    + +++L   +RP+ I V+  +S
Sbjct: 481 VILLSGCLNNKKLELGETIAKKIL--ELRPEDIGVLALVS 518


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 157/425 (36%), Positives = 256/425 (60%), Gaps = 3/425 (0%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           DV   N L+  +   G    AR +F    ++D+ SWN ++ G  + G + +A+ VF  MP
Sbjct: 79  DVVSYNTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMP 138

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-DLISWNSMIDGYAKIGDLVAAQQLF 264
            ++++SW+ M+ G+    GD+S+A   F + P K D + W +M+ GY  IG++V A + F
Sbjct: 139 VRNSVSWNAMVSGF-ACSGDMSTAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYF 197

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGAL 323
             MP RN+ SW+ ++ GY ++ +  +AL LFR M+ +  V+P+  ++   +  C+ + AL
Sbjct: 198 EAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSAL 257

Query: 324 DLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383
             GK IH +  +  ++ ++ V T+L+ MY KCG L  A  +F  M  ++V+++N MI+G 
Sbjct: 258 GFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGY 317

Query: 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443
             +G G+EA+  F +M+ EG+  + + F+ VL AC H+GL   G + F+ M+   GIEP+
Sbjct: 318 AQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPR 377

Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLV 503
           ++HYSC+VDLL RAG+LE+A++ + SMP +P+ + +GTLL ACR ++N+  AE+    L+
Sbjct: 378 VDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLI 437

Query: 504 ELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           E      G YV L+NIYA A  W+   R+R+ M+   + K  G S IEI G + EF S +
Sbjct: 438 EKDPQSAGAYVQLANIYAVANQWDDVSRVRRWMKDNTVVKTPGYSWIEIKGVLHEFRSND 497

Query: 564 IFDVQ 568
               Q
Sbjct: 498 RLHPQ 502



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 150/302 (49%), Gaps = 10/302 (3%)

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMI 248
           V  G++  A E F   P+K   +++ ++ GY +  G ++ AR LF+ +P  D++S+N+++
Sbjct: 28  VRHGDLAGAEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLL 87

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
             +   GD   A++LF  MP R+V SW+ M+ G ++ G  +EA  +F   L   VR + +
Sbjct: 88  LCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVF---LAMPVR-NSV 143

Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           S    +S  A  G +   +    + + +    D ++ TA++  YM  G++ +A + F +M
Sbjct: 144 SWNAMVSGFACSGDMSTAE---EWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAM 200

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKDDLIFLGVLIACSHSGLATEG 427
             +N++S+N ++AG   N   ++AL+ F  M  E  +  +      VL+ CS+      G
Sbjct: 201 PVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFG 260

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
            +I Q   +   +   L   + LV +  + G+L  A  +   M  + ++  W  ++    
Sbjct: 261 KQIHQWCMKLL-LSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTR-DVVAWNAMISGYA 318

Query: 488 NH 489
            H
Sbjct: 319 QH 320



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 1/145 (0%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNY-TYPFVL 119
           N+ +A + F  +   N    N ++ GY ++S+   AL  +  M R+  +  N  T   VL
Sbjct: 189 NVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVL 248

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
             C  L  L  G +IH   +K+    ++ V   L+ MY KCG +  A  +F     +D+V
Sbjct: 249 LGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVV 308

Query: 180 SWNLVLRGFVECGEMGKAREVFDEM 204
           +WN ++ G+ + G+  +A  +F+ M
Sbjct: 309 AWNAMISGYAQHGDGKEAINLFERM 333



 Score = 46.2 bits (108), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 15/200 (7%)

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG-MNGFGEEALKCFAQMETE 402
           + TA +   ++ G L  A   F S  +K   +YN ++AG     G   +A   F     +
Sbjct: 19  LSTAAVAAAVRHGDLAGAEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLF-----D 73

Query: 403 GIPKDDLIFLGVLIACSH-SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
            IP  D++    L+ C   SG A    R+F SM         +  ++ +V  LS++G +E
Sbjct: 74  RIPTPDVVSYNTLLLCHFASGDADGARRLFASMPVR-----DVASWNTMVSGLSKSGAVE 128

Query: 462 QALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521
           +A  +  +MP++ N   W  ++       +++ AE       E   +D  L+  + + Y 
Sbjct: 129 EAKVVFLAMPVR-NSVSWNAMVSGFACSGDMSTAEEWFRNAPE--KEDAVLWTAMVSGYM 185

Query: 522 DAGMWEHALRIRKMMRKRKI 541
           D G    A++  + M  R +
Sbjct: 186 DIGNVVKAIKYFEAMPVRNL 205


>gi|218195864|gb|EEC78291.1| hypothetical protein OsI_18005 [Oryza sativa Indica Group]
          Length = 690

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 173/508 (34%), Positives = 273/508 (53%), Gaps = 12/508 (2%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A  +F+ + + N      ++ G+      ++ L  +  M+  G   + +T    LKACG 
Sbjct: 58  AGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACG- 116

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
             G   G +IHG  V+ GF     V N L+ MYSK    G AR VF+    ++L +WN +
Sbjct: 117 -GGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSM 175

Query: 185 LRGFVECGEMGKAREVFDEM-----PQKDAISWSIMID-----GYRKKKGDISSARILFE 234
           + G+   G+   +  VF EM      Q D  +++ ++      G  ++   + +A  +  
Sbjct: 176 ISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRG 235

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
             P  + I   +++D Y K   L  A Q+F+ +  RN   W+ +I G+AQ G  KEA+ L
Sbjct: 236 VSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCL 295

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           FR     GVR D   +   ++  A    ++ GK +H +  ++   +D+ V  +L+DMY+K
Sbjct: 296 FRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLK 355

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG   EA R F  M  +NV+S+  MI G+G +G G EA+  F +M+ EG+  D++ +L +
Sbjct: 356 CGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLAL 415

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L ACSHSGL  E  R F  + +   + PK EHY+C+VDLL RAGEL +A  ++ SMPM+P
Sbjct: 416 LSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEP 475

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
            + +W TLL ACR H++V +   V + L+ +  D+   YV+LSNI A+AG W     IR 
Sbjct: 476 TVGVWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRG 535

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSG 562
            MR++ ++K+ G S  E+D  +  F  G
Sbjct: 536 AMRRKGLRKQGGCSWTEVDKEVHFFYGG 563



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/430 (26%), Positives = 208/430 (48%), Gaps = 28/430 (6%)

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           M+R+ ++ D      +L+A      L  G ++H  ++K+GF  D  + N LI MY+KCG 
Sbjct: 1   MERRRMIAD------LLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGK 54

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK 222
           +  A  VF+G   +++VSW  ++ GF+  GE  +   +F EM           +    K 
Sbjct: 55  LHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKA 114

Query: 223 KGDISSARILFEHMPIK------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
            G  + A +    + ++      D+++ NS++  Y+K      A+++F+ +P RN+ +W+
Sbjct: 115 CGGGTRAGVQIHGVCVRTGFEGHDVVA-NSLVVMYSKGRWTGDARRVFDVIPSRNLATWN 173

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQ-GVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
            MI GYA  G  +++L +FREM  +   +PD  +    + AC+ +GA   G  +H  M  
Sbjct: 174 SMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAV 233

Query: 336 SRIT--MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
             ++   + I+  AL+D+Y+KC  L  A ++F  + ++N I +  +I G    G  +EA+
Sbjct: 234 RGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAM 293

Query: 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF-QSMKRHCGIEPKLEHYSCLVD 452
             F +  + G+  D  +   V+   +   L  +G ++   + K   G++  +   + LVD
Sbjct: 294 CLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVA--NSLVD 351

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLA-----EVVVEGLVELKA 507
           +  + G   +A      MP + N+  W  ++     H +   A     E+  EG   ++A
Sbjct: 352 MYLKCGLTGEAGRRFREMPAR-NVVSWTAMINGVGKHGHGREAIDLFEEMQAEG---VEA 407

Query: 508 DDCGLYVLLS 517
           D+     LLS
Sbjct: 408 DEVAYLALLS 417


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 170/517 (32%), Positives = 275/517 (53%), Gaps = 50/517 (9%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N+  A++LFN +   N   +N +I GY +S               KGL +D  +     +
Sbjct: 325 NLSDAQKLFNSLPNHNLQSYNAIIVGYARSD--------------KGLGLDEVSLSGAFR 370

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC V+ G +EG ++HG  +K     ++ V N ++ MY KCG                   
Sbjct: 371 ACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCG------------------- 411

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKD 240
                   VE      A  VF+EM  +DA+SW+ +I  + +   +  +  +   +  IK 
Sbjct: 412 ------ALVE------ACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKS 459

Query: 241 LISWNS-----MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
            +  +S     +ID Y+K G +  A++L + + E+ V SW+ +I G++     +EA   F
Sbjct: 460 RLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTF 519

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
            +ML  GV PD  +    +  CA +  ++LGK IH  + +  +  D  + + L+DMY KC
Sbjct: 520 SKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKC 579

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
           G++ + + IF     ++ +++N M+ G   +G GEEALK F  M+ E +  +   FL VL
Sbjct: 580 GNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVL 639

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
            AC H GL  +G   F SM  + G++P+LEHYSC+VD++ R+G++ +AL ++E MP + +
Sbjct: 640 RACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEAD 699

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535
             +W TLL  C+ H NV +AE     +++L+ +D   YVLLSNIYA+AGMW    ++RKM
Sbjct: 700 AVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKM 759

Query: 536 MRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           MR   +KKE G S IEI   +  F+ G+    +S+E+
Sbjct: 760 MRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEI 796



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 136/511 (26%), Positives = 239/511 (46%), Gaps = 61/511 (11%)

Query: 75  PNTYMHNTMIRGYT--QSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
           P+T  H   IR +   QS +P K L        +       T+  + + C     L  G 
Sbjct: 3   PHTSRHLFPIRFFFNFQSKSPFKTLPISPFSSYQATPTKKKTFSHIFQECSDRKALCPGK 62

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
           + H  ++   F   VFV N LI MY KC  +  A  VF+G   +D VSWN +L G+   G
Sbjct: 63  QAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRG 122

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGY-----RKKKGDI--------------------S 227
           ++G A+++FD MP++D +SW+ +I GY      +K  D+                     
Sbjct: 123 DIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLK 182

Query: 228 SARILFEH--------MPIK-----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
           S   L +H        + +K     D+++ ++++D YAK   L  + Q F+ MPE+N  S
Sbjct: 183 SCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVS 242

Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
           WS +I G  Q+ + +  L LF+EM   GV     +      +CA + AL LG  +H    
Sbjct: 243 WSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHAL 302

Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK 394
           ++    D+++ TA +DMYMKC +L +A+++F S+   N+ SYN +I G   +        
Sbjct: 303 KTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARS-------- 354

Query: 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ-SMKRHCGIEPKLEHYSCLVDL 453
                  +G+  D++   G   AC+      EG ++   SMK  C  +  +   + ++D+
Sbjct: 355 ------DKGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLC--QSNICVANAILDM 406

Query: 454 LSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN--VTLAEVVVEGLVELKAD-DC 510
             + G L +A  + E M  +  ++ W  ++ A   + N   TL+  +   +++ +   D 
Sbjct: 407 YGKCGALVEACLVFEEMVSRDAVS-WNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDS 465

Query: 511 GLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
            + + L ++Y+  GM E A ++   + ++ +
Sbjct: 466 FVGIALIDMYSKCGMMEKAEKLHDRLAEQTV 496



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 123/460 (26%), Positives = 225/460 (48%), Gaps = 37/460 (8%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A++LF+ + + +    N++I GY  + + +K +  ++ M R G + D  T+  VLK+C  
Sbjct: 127 AQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSS 186

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L     G +IHG  VKMGF CDV   + L+ MY+KC  + C+   F     K+ VSW+ +
Sbjct: 187 LEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAI 246

Query: 185 LRGFVECGEMGKAREVFDEMPQKD-AISWSIMIDGYRKKKGDISSARI---LFEHMPIK- 239
           + G V+  ++    E+F EM +    +S S     +R   G +S+ R+   L  H  +K 
Sbjct: 247 IAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAG-LSALRLGSQLHGH-ALKT 304

Query: 240 ----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
               D++   + +D Y K  +L  AQ+LFN +P  N+ S++ +I GYA+           
Sbjct: 305 DFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSD--------- 355

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
                +G+  D +S+ GA  ACA +     G  +H    +S    ++ V  A++DMY KC
Sbjct: 356 -----KGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKC 410

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF--AQMETEGIPKDDLIFLG 413
           G+L EA  +F  M  ++ +S+N +IA    NG  E+ L  F   ++    +  D  + + 
Sbjct: 411 GALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGIA 470

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV---DLLSRAGELEQALNIVESM 470
           ++   S  G+  +  ++   +      E  +  ++ ++    L  ++ E ++  + +  M
Sbjct: 471 LIDMYSKCGMMEKAEKLHDRLA-----EQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEM 525

Query: 471 PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLV--ELKAD 508
            + P+   + T+L  C N   V L + +   ++  EL++D
Sbjct: 526 GVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSD 565


>gi|356546772|ref|XP_003541796.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Glycine max]
          Length = 713

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 173/513 (33%), Positives = 292/513 (56%), Gaps = 33/513 (6%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL-VDNYTYPFVLKACG 123
           A  LF+++   N    + MI GY      Q+    +++MKR+GL+ V++ T   + KACG
Sbjct: 218 ARDLFDRMPDRNVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTMTIMFKACG 277

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
               + EG +IHG V ++GF  D  + N +I MYS  G                      
Sbjct: 278 NCGRMSEGMQIHGLVSRLGFEFDNVLSNSVITMYSMLG---------------------- 315

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243
                  C +M  A +VF  +  KD ++W+ +I GY     ++ +A  +F  MP+KD+IS
Sbjct: 316 -------CTDM--ADKVFCTVSDKDIVTWNSLISGYIHNN-EVEAAYRVFGRMPVKDVIS 365

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
           W +MI G++K G +  A +LFN +P ++ F W+ +I G+  +   +EAL+ +  M+ +G 
Sbjct: 366 WTAMIAGFSKSGRVENAIELFNMLPAKDDFVWTAIISGFVNNNEYEEALHWYARMIWEGC 425

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
           +P+ +++   ++A A + AL+ G  IH  + +  +  ++ +Q +LI  Y K G++ +A R
Sbjct: 426 KPNPLTISSVLAASAALVALNEGLQIHTCILKMNLEYNLSIQNSLISFYSKSGNVVDAYR 485

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           IF  + + NVISYN +I+G   NGFG+EAL  + +M++EG   + + FL VL AC+H+GL
Sbjct: 486 IFLDVIEPNVISYNSIISGFAQNGFGDEALGIYKKMQSEGHEPNHVTFLAVLSACTHAGL 545

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             EG+ IF +MK H GIEP+ +HY+C+VD+L RAG L++A++++ SMP KP+  +WG +L
Sbjct: 546 VDEGWNIFNTMKSHYGIEPEADHYACMVDILGRAGLLDEAIDLIRSMPFKPHSGVWGAIL 605

Query: 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
            A + H  + LA++  + + +L+  +   YV+LSN+Y+ AG       ++     + IKK
Sbjct: 606 GASKTHLRLDLAKLAAQRITDLEPKNATPYVVLSNMYSAAGKKIDGDLVKMAKNLKGIKK 665

Query: 544 ETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
             G S I +   +  F++G+      EE++  I
Sbjct: 666 SPGCSWITMKNKVHLFLAGDQSHGSIEEIKTTI 698



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 191/412 (46%), Gaps = 57/412 (13%)

Query: 32  LAQLTTNDLITEPFTLSQLLMSLTSP-----NTLNMDQAERLFNQIYQPNTYMHNTMIRG 86
           L Q   ND I      S+ L+   +         N+ +AE +F+++   NT     M+  
Sbjct: 22  LNQSHNNDSINSGGKGSKFLIQCNTQIAENGRNGNVKEAESIFHKMPIKNTASWTAMLTA 81

Query: 87  YTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCD 146
           + Q+   Q A   +  M ++  + +N                               +  
Sbjct: 82  FAQNGQIQNARRLFDEMPQRTTVSNNA------------------------------MIS 111

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
            ++ NG         ++G A  +F     ++LVS+  ++ GFV+ G+   A +++ E P 
Sbjct: 112 AYIRNGC--------NVGKAYELFSVLAERNLVSYAAMIMGFVKAGKFHMAEKLYRETPY 163

Query: 207 --KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLF 264
             +D    + +I+GY K  G+++ A  +FE+M  +D++SW++M+DG  + G + AA+ LF
Sbjct: 164 EFRDPACSNALINGYLKM-GEVNEALRIFENMGERDVVSWSAMVDGLCRDGRVAAARDLF 222

Query: 265 NEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG---VRPDVISVMGAISACAQVG 321
           + MP+RNV SWS MIDGY   G  +E   LF +M  +G   V    +++M    AC   G
Sbjct: 223 DRMPDRNVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTMTIM--FKACGNCG 280

Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
            +  G  IH  + R     D ++  ++I MY   G  D A ++F +++ K+++++N +I+
Sbjct: 281 RMSEGMQIHGLVSRLGFEFDNVLSNSVITMYSMLGCTDMADKVFCTVSDKDIVTWNSLIS 340

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA-CSHSGLATEGYRIFQ 432
           G   N   E A + F +M     P  D+I    +IA  S SG       +F 
Sbjct: 341 GYIHNNEVEAAYRVFGRM-----PVKDVISWTAMIAGFSKSGRVENAIELFN 387



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 174/347 (50%), Gaps = 14/347 (4%)

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGY 251
           G + +A  +F +MP K+  SW+ M+  +  + G I +AR LF+ MP +  +S N+MI  Y
Sbjct: 55  GNVKEAESIFHKMPIKNTASWTAMLTAF-AQNGQIQNARRLFDEMPQRTTVSNNAMISAY 113

Query: 252 AKIG-DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
            + G ++  A +LF+ + ERN+ S++ MI G+ + G    A  L+RE   +   P   + 
Sbjct: 114 IRNGCNVGKAYELFSVLAERNLVSYAAMIMGFVKAGKFHMAEKLYRETPYEFRDPACSNA 173

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
           +  I+   ++G  ++ + + +F        D++  +A++D   + G +  AR +F  M  
Sbjct: 174 L--INGYLKMG--EVNEALRIFENMGE--RDVVSWSAMVDGLCRDGRVAAARDLFDRMPD 227

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI-ACSHSGLATEGYR 429
           +NV+S++ MI G    GF +E    F  M+ EG+ + +   + ++  AC + G  +EG +
Sbjct: 228 RNVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTMTIMFKACGNCGRMSEGMQ 287

Query: 430 IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
           I   + R  G E      + ++ + S  G  + A  +  ++  K ++  W + L++   H
Sbjct: 288 IHGLVSR-LGFEFDNVLSNSVITMYSMLGCTDMADKVFCTVSDK-DIVTWNS-LISGYIH 344

Query: 490 QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
            N   A   V G + +K  D   +  +   ++ +G  E+A+ +  M+
Sbjct: 345 NNEVEAAYRVFGRMPVK--DVISWTAMIAGFSKSGRVENAIELFNML 389



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 117/256 (45%), Gaps = 34/256 (13%)

Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
           K LI  N+ I    + G++  A+ +F++MP +N  SW+ M+  +AQ+G  + A  LF EM
Sbjct: 39  KFLIQCNTQIAENGRNGNVKEAESIFHKMPIKNTASWTAMLTAFAQNGQIQNARRLFDEM 98

Query: 299 L------------------CQ-GVRPDVISVMGA---ISACAQV-GALDLGKWIHVFMKR 335
                              C  G   ++ SV+     +S  A + G +  GK+ H+  K 
Sbjct: 99  PQRTTVSNNAMISAYIRNGCNVGKAYELFSVLAERNLVSYAAMIMGFVKAGKF-HMAEKL 157

Query: 336 SRIT----MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391
            R T     D     ALI+ Y+K G ++EA RIF +M +++V+S++ M+ GL  +G    
Sbjct: 158 YRETPYEFRDPACSNALINGYLKMGEVNEALRIFENMGERDVVSWSAMVDGLCRDGRVAA 217

Query: 392 ALKCFAQMETEGIPKDDLIFLGVLI-ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
           A   F +M     P  +++    +I      G   EG+ +F  MKR   +E      + +
Sbjct: 218 ARDLFDRM-----PDRNVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTMTIM 272

Query: 451 VDLLSRAGELEQALNI 466
                  G + + + I
Sbjct: 273 FKACGNCGRMSEGMQI 288



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 75/143 (52%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ A  LFN +   + ++   +I G+  ++  ++AL +Y  M  +G   +  T   VL A
Sbjct: 379 VENAIELFNMLPAKDDFVWTAIISGFVNNNEYEEALHWYARMIWEGCKPNPLTISSVLAA 438

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
              L+ L EG +IH  ++KM    ++ + N LI  YSK G++  A  +F      +++S+
Sbjct: 439 SAALVALNEGLQIHTCILKMNLEYNLSIQNSLISFYSKSGNVVDAYRIFLDVIEPNVISY 498

Query: 182 NLVLRGFVECGEMGKAREVFDEM 204
           N ++ GF + G   +A  ++ +M
Sbjct: 499 NSIISGFAQNGFGDEALGIYKKM 521



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N+  A R+F  + +PN   +N++I G+ Q+    +AL  Y  M+ +G   ++ T+  VL 
Sbjct: 479 NVVDAYRIFLDVIEPNVISYNSIISGFAQNGFGDEALGIYKKMQSEGHEPNHVTFLAVLS 538

Query: 121 ACGVLMGLVE 130
           AC    GLV+
Sbjct: 539 AC-THAGLVD 547


>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial [Vitis vinifera]
          Length = 694

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 185/579 (31%), Positives = 292/579 (50%), Gaps = 73/579 (12%)

Query: 41  ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFY 100
           + +P + + +L       +L  D A  LF ++       + TM+ G  Q++   +A+  +
Sbjct: 115 VLDPVSCNIMLAGYVKSGSL--DNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVF 172

Query: 101 VNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC 160
            +M+  G++ +  T   V+ A   + G++    +H    K+G      V   L+ MY  C
Sbjct: 173 KDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCVC 232

Query: 161 GHMG-------------------------------CARSVFEGSEIKDLVSWNLVLRGFV 189
             +G                                AR +FE    KD+VSW  ++ G+V
Sbjct: 233 SSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYV 292

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMI----------------------------DGYR- 220
           +   +G+A  ++  M +       +MI                            D Y  
Sbjct: 293 QIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDF 352

Query: 221 ---------KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271
                       G+I+ A + FE      + SWN++I G+ + G +  A+QLF+EMPER+
Sbjct: 353 IQATIIHFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERD 412

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV 331
           VFSWS MI GY+Q+  P  AL LF EM+  GV+P+ I+++   SA A +G L  G+W H 
Sbjct: 413 VFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAHE 472

Query: 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK--NVISYNVMIAGLGMNGFG 389
           ++  + I ++  +  ALIDMY KCGS+  A ++FY +  +  +V  +N +I GL M+G  
Sbjct: 473 YILSNSIPLNDNLNAALIDMYAKCGSITIALQLFYEIQDRVSSVSPWNAIICGLAMHGHA 532

Query: 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449
             +LK F+Q++   I  + + F+GVL AC H+GL   G + F+ MK    IEP ++HY C
Sbjct: 533 NVSLKLFSQLQRVRIKPNSITFIGVLSACCHAGLVDTGEKYFKGMKNLYNIEPNIKHYGC 592

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509
           ++DLL RAG L++A  ++  MPMK ++ +WGTLL ACR H NV + E   E L +L    
Sbjct: 593 MIDLLGRAGRLKEAAEMIRKMPMKADVVIWGTLLAACRTHGNVEIGERAAENLAKLDISH 652

Query: 510 CGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRS 548
               VLLSNIYADAG W+ A  +R+ M+ +++KK  G S
Sbjct: 653 GAGRVLLSNIYADAGRWDDAFLVRRAMQSQRMKKSPGCS 691



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/479 (24%), Positives = 208/479 (43%), Gaps = 104/479 (21%)

Query: 119 LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDL 178
           LK+C  L+ L +G +IH  V K G L ++FV N LI  Y KC  +  ARS+F+   + D 
Sbjct: 59  LKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFDTCSVLDP 118

Query: 179 VSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKK---------GDISSA 229
           VS N++L G+V+ G +  AR +F++MP K  +S++ M+ G  +            D+  A
Sbjct: 119 VSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVFKDMRFA 178

Query: 230 RILFEHMPIKDLISWNSMIDG-----------------------------YAKIGDLVAA 260
            ++   + +  +IS  S + G                             Y     L  A
Sbjct: 179 GVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCVCSSLGNA 238

Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHG-------------------------------NPK 289
           + LF+E+PERNV +W++M++GY++ G                                  
Sbjct: 239 RVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLG 298

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           EAL ++R ML  GV P+ + ++  ISAC +  A+  G+  H  + R+       +Q  +I
Sbjct: 299 EALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATII 358

Query: 350 DMYMKCGSLD-------------------------------EARRIFYSMTKKNVISYNV 378
             Y  CG ++                               +AR++F  M +++V S++ 
Sbjct: 359 HFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSS 418

Query: 379 MIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC 438
           MI+G   N   + AL+ F +M   G+  +++  + V  A +  G   EG    + +  + 
Sbjct: 419 MISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILSN- 477

Query: 439 GIEPKLEHYSCLVDLLSRAGELEQALNIV-ESMPMKPNLALWGTLL--LACRNHQNVTL 494
            I       + L+D+ ++ G +  AL +  E      +++ W  ++  LA   H NV+L
Sbjct: 478 SIPLNDNLNAALIDMYAKCGSITIALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSL 536



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 108/262 (41%), Gaps = 37/262 (14%)

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC------------ 355
           ++++ A+ +C+ + AL  G+ IH  + +S +  ++ V+ +LI  Y+KC            
Sbjct: 53  LTLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFDT 112

Query: 356 -------------------GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF 396
                              GSLD AR +F  M  K  +SY  M+ GL  N    EA+  F
Sbjct: 113 CSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVF 172

Query: 397 AQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456
             M   G+  +++    V+ A SH G      R+  ++    G+E      + LV +   
Sbjct: 173 KDMRFAGVIPNEVTLASVISAYSHVG-GILNCRMLHALSFKLGLEALNIVATNLVHMYCV 231

Query: 457 AGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLL 516
              L  A  + + +P + N+  W  +L        V LA  + E    + A D   +  +
Sbjct: 232 CSSLGNARVLFDEIPER-NVVTWNVMLNGYSKSGLVDLARDLFE---RIPAKDVVSWGTI 287

Query: 517 SNIYADAGMWEHALRI-RKMMR 537
            + Y        ALR+ R M+R
Sbjct: 288 IDGYVQIERLGEALRMYRSMLR 309


>gi|357118286|ref|XP_003560887.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Brachypodium distachyon]
          Length = 676

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 176/537 (32%), Positives = 286/537 (53%), Gaps = 29/537 (5%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK-----GLLVDNYTYP 116
           M +AE+LF+++ Q N    NTM+ G+  +    KAL  +  M  K     G LV  +   
Sbjct: 142 MVEAEKLFDEMPQRNVASWNTMVTGFFSAGQVNKALDMFDAMPVKDSASLGTLVSGFI-- 199

Query: 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE-- 174
                 G L    E       V  M    D +  N LI  Y + G +  AR +F+     
Sbjct: 200 ----KNGRLHEAEELLTKRLRVTDMDEAVDAY--NTLIAAYGQVGRVSDARRLFDMIPRG 253

Query: 175 ------------IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK 222
                        +++VSWN ++  ++  G++  ARE+F+EMP KD +SW+ MI GY  K
Sbjct: 254 QYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCSAREIFNEMPDKDLVSWNTMIAGY-TK 312

Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
             D+  A  LF  MP  D++SWN +I G+ + GD+  A+  F+ MPER   SW+ MI GY
Sbjct: 313 VSDMEEAEKLFWEMPDPDIVSWNLIIRGFTQKGDVEHARGFFDRMPERGTISWNTMISGY 372

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
            Q+G+   A+ LF +ML  G  PD  +    ++ACA +  L LG  +H  +++S +  D 
Sbjct: 373 EQNGHYDGAIELFTKMLEAGGTPDRHTFSSVLAACASLPMLRLGAQLHQLIEKSFLP-DT 431

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
               AL+ MY + G+L +A  IF  M +K+++S+N +I G   +G   EAL+ F  M + 
Sbjct: 432 ATSNALMTMYSRGGALTDAEAIFKQMPQKDLVSWNALIGGYEHHGCATEALQLFEDMRSA 491

Query: 403 GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
            +    + F+ +L AC ++GL +EG+ +F +M     I  ++EHY+ LV+L+ R G+L+ 
Sbjct: 492 RVMPTHITFISLLSACGNAGLVSEGWMVFDTMIHEYSIAARIEHYAALVNLIGRHGQLDD 551

Query: 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522
           AL ++ SMP+ P+ ++WG  L AC   +N  LA +  + L ++  +    YVL+ N++A 
Sbjct: 552 ALEVINSMPIAPDRSVWGAFLGACTAKKNELLAHMAAKALSKIDPESSAPYVLIHNLHAH 611

Query: 523 AGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSF 579
            G W  A  +R+ M ++ I K  G S I++   +  F+SG+     ++E+  V++ F
Sbjct: 612 EGRWGSASVVREEMEQQGIHKHPGYSWIDLHDKVHVFISGDTSHPLTQEIFSVLKCF 668



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 178/406 (43%), Gaps = 91/406 (22%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D    N L+G Y + G M  A  +F+    +++ SWN ++ GF   G++ KA ++FD MP
Sbjct: 125 DAVTWNTLLGAYVRRGLMVEAEKLFDEMPQRNVASWNTMVTGFFSAGQVNKALDMFDAMP 184

Query: 206 QKDAISWSIMIDGYRK-----------------------------------KKGDISSAR 230
            KD+ S   ++ G+ K                                   + G +S AR
Sbjct: 185 VKDSASLGTLVSGFIKNGRLHEAEELLTKRLRVTDMDEAVDAYNTLIAAYGQVGRVSDAR 244

Query: 231 ILFEHMP--------------IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
            LF+ +P               ++++SWNSM+  Y + GD+ +A+++FNEMP++++ SW+
Sbjct: 245 RLFDMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCSAREIFNEMPDKDLVSWN 304

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS 336
            MI GY +  + +EA  LF EM      PD++S                  W        
Sbjct: 305 TMIAGYTKVSDMEEAEKLFWEM----PDPDIVS------------------W-------- 334

Query: 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF 396
                      +I  + + G ++ AR  F  M ++  IS+N MI+G   NG  + A++ F
Sbjct: 335 ---------NLIIRGFTQKGDVEHARGFFDRMPERGTISWNTMISGYEQNGHYDGAIELF 385

Query: 397 AQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456
            +M   G   D   F  VL AC+   +   G ++ Q +++     P     + L+ + SR
Sbjct: 386 TKMLEAGGTPDRHTFSSVLAACASLPMLRLGAQLHQLIEK--SFLPDTATSNALMTMYSR 443

Query: 457 AGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
            G L  A  I + MP K +L  W  L+    +H   T A  + E +
Sbjct: 444 GGALTDAEAIFKQMPQK-DLVSWNALIGGYEHHGCATEALQLFEDM 488



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 163/334 (48%), Gaps = 37/334 (11%)

Query: 170 FEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK--KKGDIS 227
           F+    + +V+WN  L       ++  AR  F  MP +DA+SW+ ++  Y +      ++
Sbjct: 53  FDALPARSVVTWNSFLAALARGRDVAAARAFFASMPVRDAVSWNTLLAAYSRSLNSEHLA 112

Query: 228 SARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN 287
           +AR LF+ MP +D ++WN+++  Y + G +V A++LF+EMP+RNV SW+ M+ G+   G 
Sbjct: 113 AARRLFDEMPQRDAVTWNTLLGAYVRRGLMVEAEKLFDEMPQRNVASWNTMVTGFFSAGQ 172

Query: 288 PKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRIT-MDMIVQT 346
             +AL +F  M  +    D  S+   +S   + G L   +   +  KR R+T MD  V  
Sbjct: 173 VNKALDMFDAMPVK----DSASLGTLVSGFIKNGRLHEAE--ELLTKRLRVTDMDEAVDA 226

Query: 347 --ALIDMYMKCGSLDEARRIFYSMTK--------------KNVISYNVMIAGLGMNGFGE 390
              LI  Y + G + +ARR+F  + +              +NV+S+N M+      G   
Sbjct: 227 YNTLIAAYGQVGRVSDARRLFDMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVC 286

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIA-CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449
            A + F +M     P  DL+    +IA  +      E  ++F  M      +P +  ++ 
Sbjct: 287 SAREIFNEM-----PDKDLVSWNTMIAGYTKVSDMEEAEKLFWEMP-----DPDIVSWNL 336

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
           ++   ++ G++E A    + MP +  ++ W T++
Sbjct: 337 IIRGFTQKGDVEHARGFFDRMPERGTIS-WNTMI 369



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 143/285 (50%), Gaps = 23/285 (8%)

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF---VECGEMGKAREVFDE 203
           V   N  +   ++   +  AR+ F    ++D VSWN +L  +   +    +  AR +FDE
Sbjct: 61  VVTWNSFLAALARGRDVAAARAFFASMPVRDAVSWNTLLAAYSRSLNSEHLAAARRLFDE 120

Query: 204 MPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQL 263
           MPQ+DA++W+ ++  Y  ++G +  A  LF+ MP +++ SWN+M+ G+   G +  A  +
Sbjct: 121 MPQRDAVTWNTLLGAY-VRRGLMVEAEKLFDEMPQRNVASWNTMVTGFFSAGQVNKALDM 179

Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR-PDVISVMGA----ISACA 318
           F+ MP ++  S   ++ G+ ++G   EA     E+L + +R  D+   + A    I+A  
Sbjct: 180 FDAMPVKDSASLGTLVSGFIKNGRLHEA----EELLTKRLRVTDMDEAVDAYNTLIAAYG 235

Query: 319 QVGALDLGKWIHVFMKRSR----------ITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
           QVG +   + +   + R +             +++   +++  Y++ G +  AR IF  M
Sbjct: 236 QVGRVSDARRLFDMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCSAREIFNEM 295

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
             K+++S+N MIAG       EEA K F +M    I   +LI  G
Sbjct: 296 PDKDLVSWNTMIAGYTKVSDMEEAEKLFWEMPDPDIVSWNLIIRG 340



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 112/226 (49%), Gaps = 16/226 (7%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A   F+++ +  T   NTMI GY Q+ +   A+  +  M   G   D +T+  VL 
Sbjct: 346 DVEHARGFFDRMPERGTISWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTFSSVLA 405

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L  G ++H ++++  FL D    N L+ MYS+ G +  A ++F+    KDLVS
Sbjct: 406 ACASLPMLRLGAQLH-QLIEKSFLPDTATSNALMTMYSRGGALTDAEAIFKQMPQKDLVS 464

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGD---ISSARILFEHMP 237
           WN ++ G+   G   +A ++F++M     +   I         G+   +S   ++F+ M 
Sbjct: 465 WNALIGGYEHHGCATEALQLFEDMRSARVMPTHITFISLLSACGNAGLVSEGWMVFDTMI 524

Query: 238 IKDLISWNSMIDGYAKI-------GDLVAAQQLFNEM---PERNVF 273
            +  I+  + I+ YA +       G L  A ++ N M   P+R+V+
Sbjct: 525 HEYSIA--ARIEHYAALVNLIGRHGQLDDALEVINSMPIAPDRSVW 568


>gi|115471447|ref|NP_001059322.1| Os07g0260000 [Oryza sativa Japonica Group]
 gi|113610858|dbj|BAF21236.1| Os07g0260000 [Oryza sativa Japonica Group]
          Length = 750

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 171/505 (33%), Positives = 261/505 (51%), Gaps = 75/505 (14%)

Query: 106 KGLLVDNYTYPFVLKACGVLMGLVEGTE-IHGEVVKMGFLCDVFVVNGLIGMYSKC---- 160
           +G+  + +T+ F+L+AC  L+GL      +HG++V+ GF  DVFV N L+ +Y +C    
Sbjct: 105 QGVPPNGFTFTFLLRACA-LLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGG 163

Query: 161 --------------------------------GHMGCARSVFEGSEIKDLVSWNLVLRGF 188
                                           G    A   FE    +++VSWN V+ GF
Sbjct: 164 GGGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGF 223

Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMI 248
              G+M  AR VFD MP ++A+SW++MI GY    GD+ +AR +F+ M  KD++SW +M+
Sbjct: 224 ARMGDMVTARAVFDRMPSRNAVSWNLMISGY-AMSGDVEAARSVFDRMDQKDVVSWTAMV 282

Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDV 307
             YAKIGDL    +LF+ MP +N+ SW+ MI GY  +    EAL  F+ M+ +G  RPD 
Sbjct: 283 SAYAKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDE 342

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
            +++  +SACAQ+G+++   WI  F+ +S I + + +  ALIDM+ KCG +  A  IFY 
Sbjct: 343 ATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYK 402

Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
           M  + +I++  MI+G   NG   +AL  +  M  EG+  DD +F+  L AC+H GL  EG
Sbjct: 403 METRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEG 462

Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
           + IF  M     I+P++EHY C+VDLL RA                              
Sbjct: 463 WSIFNEMVERYNIQPRMEHYGCMVDLLGRA------------------------------ 492

Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
                 L E V + + EL+  +    VL+SN  A  G W+  +  R  MR   I+K  G 
Sbjct: 493 -----ELIEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGIEKVPGS 547

Query: 548 SVIEIDGNIKEFVSGEIFDVQSEEL 572
           S I++   + EF++ +    + +E+
Sbjct: 548 SSIQVGSEVHEFLAKDTRHKRRKEI 572


>gi|449451962|ref|XP_004143729.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
           mitochondrial-like [Cucumis sativus]
          Length = 591

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 196/567 (34%), Positives = 308/567 (54%), Gaps = 15/567 (2%)

Query: 2   KTLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLN 61
           K L  A  S +  L+SLL+    T+ I QI   +    L  +PFTLS+LL S      L+
Sbjct: 18  KNLYFAISSDQAKLLSLLESCNGTSKISQIHCYMVKTALDLDPFTLSKLLASAI----LD 73

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +  A  +F +I  PN +M NTM+RGY+ S++ ++A   + +++ +  L D +++   LKA
Sbjct: 74  IKYAASIFREIRNPNLFMFNTMLRGYSNSNDSKQAFVIFNDLRNQDFLPDRFSFITTLKA 133

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF-EGSEIKDLVS 180
           C   + +  G  IHG V K G      V N L+  Y  C  +  A  +F E S+  DLVS
Sbjct: 134 CARELAIHVGKGIHGIVHKSGHGLFNDVNNILLHFYGACEQIKDAHKLFDEISQRNDLVS 193

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS---ARILFEHMP 237
           WN ++ G++   +     + F +M ++  I+ +  +       GD+ +    R L+ H  
Sbjct: 194 WNTLMDGYLRASQPIVVLDTFRQMCRRGLIANTGTLLSVASAVGDVGNTMDGRSLYGHC- 252

Query: 238 IK-----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
           IK     +L     +ID Y K GDL  A  +FNE+ E++V  W+ +ID YA++G  K+A+
Sbjct: 253 IKLGLGSNLRVVTCLIDMYGKFGDLDEAGTIFNEVAEKDVIVWNCLIDNYAKNGLIKKAV 312

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
                M  +G++P+  ++ G ISACA  GA+  GK++  +     + +D+++ T LI MY
Sbjct: 313 ASLHLMKLEGMKPNSSTLAGLISACATSGAVSTGKYLANYADNEGLDLDVVLGTTLIGMY 372

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            K G LD+A  IF  M  K+V ++  MI G G +G   + ++   +ME EG   +++ FL
Sbjct: 373 AKFGFLDKAIDIFDKMKNKDVKTWTAMITGYGDHGQTRKVMETLYRMEEEGFRPNEITFL 432

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP- 471
            VL A SH G+  EG + F+ M    GI PK+EHY C++DLL RAG LE+A  +++S+P 
Sbjct: 433 AVLNAYSHGGIVAEGMKCFKRMVYEYGITPKIEHYGCIIDLLGRAGLLEEAHKLIKSLPS 492

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
            K ++  W TLL ACR + +V L E V   LV+L  +     +LLS+ YA AG      +
Sbjct: 493 TKGDITGWRTLLAACRVYGDVELGETVKRKLVDLNDEHPADSMLLSSTYAIAGRLSDYTQ 552

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKE 558
            +      K+K+  G S ++I+  IKE
Sbjct: 553 YQLRKEGNKVKEANGSSQVQIEKAIKE 579


>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
          Length = 499

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 144/339 (42%), Positives = 219/339 (64%), Gaps = 1/339 (0%)

Query: 224 GDISSARILF-EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
           G ++SAR +F E     D++SWN MIDGY K GDL  A++LF+ MP RNV SW+++I  Y
Sbjct: 120 GSVASARRVFDETAAYADVVSWNVMIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAY 179

Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
           AQ   P+EA+ +FR M  +G+ PD ++++  +SAC  +G +DLG+W+H F+ R  +  ++
Sbjct: 180 AQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRGLCQEI 239

Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
            +  A+IDMY+KCGS+ +A  +F  M +K+++++  MIAG  ++G G EA++ F +ME E
Sbjct: 240 PLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGSEAVELFRRMEKE 299

Query: 403 GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
            +  +D+ FL VL  CSH GL   G   F++M     I+P++EHY C++DLL RAG L +
Sbjct: 300 NVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLME 359

Query: 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522
           A  +++ MP K N A+WG LL A R H +  L E  +  L+EL+  + G Y+LLSNIYA+
Sbjct: 360 ARGLIQDMPFKANAAIWGALLAAARTHGDTELGEQALLHLIELEPHNSGNYILLSNIYAE 419

Query: 523 AGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
              W+    +R  MR R ++   G S I++DG + EF S
Sbjct: 420 QERWDAVRELRISMRDRGLRNVPGASSIDVDGMVHEFTS 458



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 152/313 (48%), Gaps = 46/313 (14%)

Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF-EGSEIKDLVSWNLVLRGFVEC 191
           ++H  +V+ G   D      L+  Y  CG +  AR VF E +   D+VSWN+++ G+V+ 
Sbjct: 92  QLHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAAYADVVSWNVMIDGYVKS 151

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK------------ 239
           G++ +ARE+FD MP ++ +SW+++I  Y + K    +  + F  M ++            
Sbjct: 152 GDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEV-FRRMQVEGIEPDGVALLSV 210

Query: 240 ----------DLISW-----------------NSMIDGYAKIGDLVAAQQLFNEMPERNV 272
                     DL  W                 N++ID Y K G +  A ++F  M ++++
Sbjct: 211 LSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSI 270

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW-IHV 331
            +W+ MI G+A HG   EA+ LFR M  + V P+ I+ +  +S C+ VG  DLG+W    
Sbjct: 271 VTWTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKT 330

Query: 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG--- 387
            + + +I   +     +ID+  + G L EAR +   M  K N   +  ++A    +G   
Sbjct: 331 MVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTE 390

Query: 388 FGEEALKCFAQME 400
            GE+AL    ++E
Sbjct: 391 LGEQALLHLIELE 403



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 114/249 (45%), Gaps = 35/249 (14%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++ +A  LF+ +   N      +I  Y Q   P++A+  +  M+ +G+  D      VL 
Sbjct: 153 DLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLS 212

Query: 121 ACGVLMGLVE-GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           ACG L G+V+ G  +H  V++ G   ++ ++N +I MY KCG +  A  VFEG E K +V
Sbjct: 213 ACGDL-GVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIV 271

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILF--EHMP 237
           +W  ++ GF   G   +A E+F  M +K+ +S             DI+   +L    H+ 
Sbjct: 272 TWTTMIAGFALHGLGSEAVELFRRM-EKENVS-----------PNDITFLAVLSVCSHVG 319

Query: 238 IKDLISW------------------NSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIM 278
           + DL  W                    MID   + G L+ A+ L  +MP + N   W  +
Sbjct: 320 LTDLGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGAL 379

Query: 279 IDGYAQHGN 287
           +     HG+
Sbjct: 380 LAAARTHGD 388


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  311 bits (796), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 175/509 (34%), Positives = 277/509 (54%), Gaps = 7/509 (1%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +  A +LF+ + Q +    N +I GY Q+    +A   +  M   G+  D+ T+   L  
Sbjct: 210 LQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPC 269

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
              L+ L    EIHG +++   + DVF+ + LI +Y KC  +  A+     S   D V  
Sbjct: 270 VNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVC 329

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFE-HMPI-- 238
             ++ G+V  G+  +A E F  + Q+     S+           +++  +  E H  I  
Sbjct: 330 TTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIK 389

Query: 239 ----KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
               +     ++++D YAK G L  A ++FN + E++   W+ MI   +Q+G P EA+ L
Sbjct: 390 TKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINL 449

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           FR+M  +G R D +S+ GA+SACA + AL  GK IH  M +  +  D+  +++LIDMY K
Sbjct: 450 FRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAK 509

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG+L+ +RR+F  M +KN +S+N +I+  G +G  +E L  F +M   GI  D + FLG+
Sbjct: 510 CGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGI 569

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           + AC H+G   EG R +  M    GI  ++EHY+C+ D+  RAG L +A   + SMP  P
Sbjct: 570 ISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPP 629

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           +  +WGTLL AC  H NV LAEV  + L +L   + G YVLL+N+ A AG W   L++R 
Sbjct: 630 DAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRS 689

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           +M++R ++K  G S IE++     FV+ +
Sbjct: 690 IMKERGVRKVPGYSWIEVNNATHMFVAAD 718



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 129/439 (29%), Positives = 217/439 (49%), Gaps = 9/439 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  A+ LF+ I Q ++ + N M+ GY ++ +   A+  ++ M+   +  ++ T+  VL 
Sbjct: 108 HLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLS 167

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C     L  GT++HG  V  G   D  V N L+ MYSKC  +  AR +F+     DLVS
Sbjct: 168 VCASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVS 227

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR-------ILF 233
           WN ++ G+V+ G MG+A  +F  M        SI    +     ++ S +        + 
Sbjct: 228 WNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYII 287

Query: 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
            H  + D+   +++ID Y K  D+  AQ+   +    +    + MI GY  +G  KEAL 
Sbjct: 288 RHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALE 347

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
            FR ++ + ++P  ++      A A + AL+LGK +H  + ++++     V +A++DMY 
Sbjct: 348 AFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYA 407

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCG LD A R+F  +T+K+ I +N MI     NG   EA+  F QM  EG   D +   G
Sbjct: 408 KCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISG 467

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
            L AC++      G  I   M +   +   L   S L+D+ ++ G L  +  + + M  K
Sbjct: 468 ALSACANLPALHYGKEIHGLMIKG-PLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEK 526

Query: 474 PNLALWGTLLLACRNHQNV 492
            N   W +++ A  NH ++
Sbjct: 527 -NEVSWNSIISAYGNHGDL 544



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 126/441 (28%), Positives = 225/441 (51%), Gaps = 21/441 (4%)

Query: 59  TLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFV 118
           T ++  A+ LF  +    T   N MIRG+T       AL FY+ M   G+  D YT+P+V
Sbjct: 5   TGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYV 64

Query: 119 LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDL 178
           +KAC  L  +  G  +H  V  MG   DVFV + LI +Y++ GH+  A+ +F+    KD 
Sbjct: 65  VKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDS 124

Query: 179 VSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSI-------------MIDGYRKKKGD 225
           V WN++L G+V+ G+ G A ++F EM   +    S+             M+D   +  G 
Sbjct: 125 VLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHG- 183

Query: 226 ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
           I+    L    P+      N+++  Y+K   L AA++LF+ +P+ ++ SW+ +I GY Q+
Sbjct: 184 IAVGCGLELDSPVA-----NTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQN 238

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
           G   EA +LFR M+  G++PD I+    +    ++ +L   K IH ++ R  + +D+ ++
Sbjct: 239 GLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLK 298

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
           +ALID+Y KC  ++ A++     +  + +    MI+G  +NG  +EAL+ F  +  E + 
Sbjct: 299 SALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMK 358

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
              + F  +  A +       G  +  S+ +   ++ K    S ++D+ ++ G L+ A  
Sbjct: 359 PTSVTFSSIFPAFAGLAALNLGKELHGSIIK-TKLDEKCHVGSAILDMYAKCGRLDLACR 417

Query: 466 IVESMPMKPNLALWGTLLLAC 486
           +   +  K  +  W +++ +C
Sbjct: 418 VFNRITEKDAIC-WNSMITSC 437



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 137/268 (51%), Gaps = 9/268 (3%)

Query: 156 MYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM----PQKDAIS 211
           MY + G +  A+++F   ++    +WN ++RGF   G+   A   + +M       D  +
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 212 WSIMIDGYRKKKGDISSARILFEHMPI----KDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
           +  ++      K  +   +I+ E + +    +D+   +S+I  YA+ G L  AQ LF+ +
Sbjct: 61  FPYVVKACCGLK-SVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK 327
           P+++   W++M++GY ++G+   A+ +F EM    ++P+ ++    +S CA    LDLG 
Sbjct: 120 PQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGT 179

Query: 328 WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
            +H       + +D  V   L+ MY KC  L  AR++F ++ + +++S+N +I+G   NG
Sbjct: 180 QLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNG 239

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVL 415
              EA   F  M + GI  D + F   L
Sbjct: 240 LMGEAEHLFRGMISAGIKPDSITFASFL 267



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 115/233 (49%), Gaps = 2/233 (0%)

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           Y + G L  A+ LF  +      +W+ MI G+   G    AL  + +ML  GV PD  + 
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
              + AC  + ++ +GK +H  +    +  D+ V ++LI +Y + G L +A+ +F ++ +
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
           K+ + +NVM+ G   NG    A+K F +M    I  + + F  VL  C+   +   G ++
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQL 181

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
              +   CG+E      + L+ + S+   L+ A  + +++P + +L  W  ++
Sbjct: 182 -HGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLP-QSDLVSWNGII 232



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 2/133 (1%)

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           MY++ GSL +A+ +FY++      ++N MI G  M G    AL  + +M   G+  D   
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
           F  V+ AC        G +I        G++  +   S L+ L +  G L  A  + +++
Sbjct: 61  FPYVVKACCGLKSVKMG-KIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 471 PMKPNLALWGTLL 483
           P K ++ LW  +L
Sbjct: 120 PQKDSV-LWNVML 131



 Score = 39.7 bits (91), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 34/177 (19%), Positives = 72/177 (40%), Gaps = 32/177 (18%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           N++ + R+F+++ + N    N++I  Y    + ++ L+ +  M R G+  D+ T+  ++ 
Sbjct: 512 NLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIIS 571

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           ACG    + EG   +             ++    G+ ++  H  C   +F          
Sbjct: 572 ACGHAGQVDEGIRYY------------HLMTEEYGIPARMEHYACVADMFG--------- 610

Query: 181 WNLVLRGFVECGEMGKAREVFDEMP-QKDAISWSIMIDGYRKKKGDISSARILFEHM 236
                      G + +A E  + MP   DA  W  ++ G     G++  A +  +H+
Sbjct: 611 ---------RAGRLHEAFETINSMPFPPDAGVWGTLL-GACHIHGNVELAEVASKHL 657


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 195/614 (31%), Positives = 300/614 (48%), Gaps = 91/614 (14%)

Query: 39  DLITEPFTLSQLLMSLTSPNTLNMDQAERLF--NQIYQPNTYMHNTMIRGYTQSSNPQKA 96
           D I +P  +++  +     +  N + A  +F    +   +T  +N MI GY+ +++   A
Sbjct: 74  DEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGA 133

Query: 97  LSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG----TEIHGEVVKMGFLCDVFVVNG 152
           +  + ++ R G   DN+T+  VL   G L  +VE      +IH  VVK G      V+N 
Sbjct: 134 IELFRDLLRNGFRPDNFTFTSVL---GALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNA 190

Query: 153 LIGMYSKC----------------------------------------GHMGCARSVFEG 172
           L+ ++ KC                                        G +  AR   +G
Sbjct: 191 LLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDG 250

Query: 173 SEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRK------- 221
              K +V+WN ++ G+V  G   +A E+F +M     Q D  +++ ++            
Sbjct: 251 MTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHG 310

Query: 222 -------------------------------KKGDISSARILFEHMPIKDLISWNSMIDG 250
                                          K G +  AR +F  MP+KDL+SWN+++ G
Sbjct: 311 KQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSG 370

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           Y   G +  A+  F EMPERN+ +W++MI G AQ+G  +E+L LF  M  +G  P   + 
Sbjct: 371 YVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAF 430

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
            GAI ACA + AL  G+ +H  + R      +    ALI MY KCG ++ A  +F +M  
Sbjct: 431 AGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPY 490

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
            + +S+N MIA LG +G G +AL+ F  M  E I  D + FL VL  CSH+GL  EG+R 
Sbjct: 491 LDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRY 550

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
           F+SM    GI P  +HY+ ++DLL RAG+  +A +++E+MP++P   +W  LL  CR H 
Sbjct: 551 FKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHG 610

Query: 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
           N+ L     E L EL     G YVLLSN+YA  G W+   ++RK+MR + +KKE G S I
Sbjct: 611 NMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWI 670

Query: 551 EIDGNIKEFVSGEI 564
           E++  +  F+  +I
Sbjct: 671 EVENKVHVFLVDDI 684



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 129/521 (24%), Positives = 215/521 (41%), Gaps = 121/521 (23%)

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
           +H  ++  GF    +++N LI +Y K   +  A  +F+     D+V+   ++      G 
Sbjct: 37  VHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGN 96

Query: 194 MGKAREVFDEMPQ--KDAISWSIMIDGYRKKK---GDISSARILFEHMPIKDLISWNSMI 248
              ARE+F   P   +D + ++ MI GY       G I   R L  +    D  ++ S++
Sbjct: 97  SNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVL 156

Query: 249 DGYAKIGD---------------------------------------------LVAAQQL 263
              A I +                                             + AA++L
Sbjct: 157 GALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKL 216

Query: 264 FNEMPERN-------------------------------VFSWSIMIDGYAQHGNPKEAL 292
           F+EM ER+                               V +W+ MI GY  HG   EAL
Sbjct: 217 FDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEAL 276

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS--RITMD--MIVQTAL 348
            +FR+M   G++ D  +    +SACA  G    GK +H ++ R+  R ++D  + V  AL
Sbjct: 277 EMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNAL 336

Query: 349 IDMYMKCGSLDEARRIFYSMTKKNVISYN------------------------------- 377
             +Y KCG +DEAR++F  M  K+++S+N                               
Sbjct: 337 ATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWT 396

Query: 378 VMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRH 437
           VMI+GL  NGFGEE+LK F +M++EG    D  F G +IAC+       G ++   + R 
Sbjct: 397 VMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVR- 455

Query: 438 CGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEV 497
            G +  L   + L+ + ++ G +E A  +  +MP   +++ W  ++ A   H +   A  
Sbjct: 456 LGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVS-WNAMIAALGQHGHGAQALE 514

Query: 498 VVEGLV--ELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
           + E ++  ++  D      +LS   + AG+ E   R  K M
Sbjct: 515 LFELMLKEDILPDRITFLTVLSTC-SHAGLVEEGHRYFKSM 554



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 173/372 (46%), Gaps = 57/372 (15%)

Query: 215 MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE--RNV 272
           +ID Y  K  D+ SA  LF+ +   D+++  ++I  ++  G+   A+++F   P   R+ 
Sbjct: 56  LIDVY-CKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDT 114

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD---VISVMGAIS------------AC 317
             ++ MI GY+ + +   A+ LFR++L  G RPD     SV+GA++             C
Sbjct: 115 VCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHC 174

Query: 318 AQVGALD------LGKWIHVFMK--------------RSRITMDMIVQ------TALIDM 351
           A V +        L   + VF+K               +R   D + +      T +I  
Sbjct: 175 AVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAG 234

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y++ G LD AR+    MT+K V+++N MI+G   +GF  EAL+ F +M   GI  D+  +
Sbjct: 235 YVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTY 294

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPK------LEHYSCLVDLLSRAGELEQALN 465
             VL AC+++G    G ++   + R    EP+      L   + L  L  + G++++A  
Sbjct: 295 TSVLSACANAGFFLHGKQVHAYILR---TEPRPSLDFSLSVNNALATLYWKCGKVDEARQ 351

Query: 466 IVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM 525
           +   MP+K +L  W  +L    N   +  A+   E   E+   +   + ++ +  A  G 
Sbjct: 352 VFNQMPVK-DLVSWNAILSGYVNAGRIDEAKSFFE---EMPERNLLTWTVMISGLAQNGF 407

Query: 526 WEHALRIRKMMR 537
            E +L++   M+
Sbjct: 408 GEESLKLFNRMK 419



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 127/293 (43%), Gaps = 27/293 (9%)

Query: 10  SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLF 69
           S+ N L +L           Q+  Q+   DL++    LS  +      N   +D+A+  F
Sbjct: 331 SVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYV------NAGRIDEAKSFF 384

Query: 70  NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV 129
            ++ + N      MI G  Q+   +++L  +  MK +G    +Y +   + AC  L  L+
Sbjct: 385 EEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALM 444

Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
            G ++H ++V++GF   +   N LI MY+KCG +  A  +F      D VSWN ++    
Sbjct: 445 HGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALG 504

Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMI--------------DGYRKKKGDISSARILFEH 235
           + G   +A E+F+ M ++D +   I                +G+R  K    S   L+  
Sbjct: 505 QHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFK----SMSGLYGI 560

Query: 236 MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
            P +D   +  MID   + G    A+ +   MP E     W  ++ G   HGN
Sbjct: 561 CPGED--HYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGN 611


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 174/509 (34%), Positives = 278/509 (54%), Gaps = 7/509 (1%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +  A +LF+   Q +    N +I GY Q+    +A   +  M   G+  D+ T+   L  
Sbjct: 210 LQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPC 269

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
              L+ L    EIHG +++   + DVF+ + LI +Y KC  +  A+ +   S   D V  
Sbjct: 270 VNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVC 329

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFE-HMPI-- 238
             ++ G+V  G+  +A E F  + Q+     S+           +++  +  E H  I  
Sbjct: 330 TTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIK 389

Query: 239 ----KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
               +     ++++D YAK G L  A ++FN + E++   W+ MI   +Q+G P EA+ L
Sbjct: 390 TKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINL 449

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           FR+M  +G R D +S+ GA+SACA + AL  GK IH  M +  +  D+  +++LIDMY K
Sbjct: 450 FRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAK 509

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG+L+ +RR+F  M ++N +S+N +I+  G +G  +E L  F +M   GI  D + FLG+
Sbjct: 510 CGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGI 569

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           + AC H+G   EG R +  M    GI  ++EHY+C+ D+  RAG L++A   + SMP  P
Sbjct: 570 ISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPP 629

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
           +  +WGTLL AC  H NV LAEV  + L +L   + G YVLL+N+ A AG W   L++R 
Sbjct: 630 DAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRS 689

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           +M++R ++K  G S IE++     FV+ +
Sbjct: 690 IMKERGVRKVPGYSWIEVNNATHMFVAAD 718



 Score =  185 bits (470), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 126/441 (28%), Positives = 225/441 (51%), Gaps = 21/441 (4%)

Query: 59  TLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFV 118
           T ++  A+ LF  +    T   N MIRG+T       AL FY+ M   G+  D YT+P+V
Sbjct: 5   TGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYV 64

Query: 119 LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDL 178
           +KAC  L  +  G  +H  V  MG   DVFV + LI +Y++ GH+  A+ +F+    KD 
Sbjct: 65  VKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDS 124

Query: 179 VSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSI-------------MIDGYRKKKGD 225
           V WN++L G+V+ G+ G A ++F EM   +    S+             M+D   +  G 
Sbjct: 125 VLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGI 184

Query: 226 ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
             S  +  +  P+      N+++  Y+K   L AA++LF+  P+ ++ SW+ +I GY Q+
Sbjct: 185 AVSCGLELDS-PVA-----NTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQN 238

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
           G   EA +LFR M+  G++PD I+    +    ++ +L   K IH ++ R  + +D+ ++
Sbjct: 239 GLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLK 298

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
           +ALID+Y KC  ++ A++I    +  + +    MI+G  +NG  +EAL+ F  +  E + 
Sbjct: 299 SALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMK 358

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
              + F  +  A +       G  +  S+ +   ++ K    S ++D+ ++ G L+ A  
Sbjct: 359 PTSVTFSSIFPAFAGLAALNLGKELHGSIIK-TKLDEKCHVGSAILDMYAKCGRLDLACR 417

Query: 466 IVESMPMKPNLALWGTLLLAC 486
           +   +  K  +  W +++ +C
Sbjct: 418 VFNRITEKDAIC-WNSMITSC 437



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 159/316 (50%), Gaps = 8/316 (2%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A+++  Q    +T +  TMI GY  +   ++AL  +  + ++ +   + T+  +  
Sbjct: 310 DVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFP 369

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           A   L  L  G E+HG ++K        V + ++ MY+KCG +  A  VF     KD + 
Sbjct: 370 AFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAIC 429

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI------LFE 234
           WN ++    + G  G+A  +F +M  +      + I G      ++ +         L  
Sbjct: 430 WNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMI 489

Query: 235 HMPIK-DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
             P++ DL + +S+ID YAK G+L  ++++F+ M ERN  SW+ +I  Y  HG+ KE L 
Sbjct: 490 KGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLA 549

Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMY 352
           LF EML  G++PD ++ +G ISAC   G +D G ++ H+  +   I   M     + DM+
Sbjct: 550 LFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMF 609

Query: 353 MKCGSLDEARRIFYSM 368
            + G LDEA     SM
Sbjct: 610 GRAGRLDEAFETINSM 625



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 136/268 (50%), Gaps = 9/268 (3%)

Query: 156 MYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM----PQKDAIS 211
           MY + G +  A+++F   ++    +WN ++RGF   G+   A   + +M       D  +
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 212 WSIMIDGYRKKKGDISSARILFEHMPI----KDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
           +  ++      K  +   +I+ E + +    +D+   +S+I  YA+ G L  AQ LF+ +
Sbjct: 61  FPYVVKACCGLK-SVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK 327
           P+++   W++M++GY ++G+   A+ +F EM    ++P+ ++    +S CA    LDLG 
Sbjct: 120 PQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGT 179

Query: 328 WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
            +H       + +D  V   L+ MY KC  L  AR++F +  + +++S+N +I+G   NG
Sbjct: 180 QLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNG 239

Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVL 415
              EA   F  M + GI  D + F   L
Sbjct: 240 LMGEAEHLFRGMISAGIKPDSITFASFL 267


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 185/581 (31%), Positives = 321/581 (55%), Gaps = 44/581 (7%)

Query: 29  LQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP--NTYMHNTMIRG 86
           LQ+ A LT   L  + F+ + L+ +       +   A ++F+++ +   +      +I  
Sbjct: 72  LQVHAYLTRLGLAADRFSAAALVDAYGKCG--HAYYAAQVFDEMPEGSVDVVSWTALISA 129

Query: 87  YTQSSNPQKALSFYVNMK-------RKGLLVDNYTYPFVLKACGVLMG---LVEGTEIHG 136
           Y+ +    +A   +  M+        +   VD  +   ++ AC V  G   L  G+ +HG
Sbjct: 130 YSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHG 189

Query: 137 EVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI--KDLVSWNLVLRGFVECGEM 194
            VVK GF     + N ++ MYS C  +G A  VF G  I  +D+VSWN ++ GF   GE 
Sbjct: 190 LVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEA 249

Query: 195 GKAREVFDEM---------PQKDAISWSIMIDGYRKKKGDISSARILFEHMP-------- 237
            +A   F++M         P +  +   I +     + G + ++  + E++         
Sbjct: 250 ERALRTFEDMVSEGTSAVEPNRVTV---IALLKSCAELGCVETSSWVHEYISSRHSSLLV 306

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
            KD++   +++D +A+ G+L  A+++F+ +  +NV  WS MI GY Q   P+EAL LFR+
Sbjct: 307 AKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQ 366

Query: 298 MLCQG------VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           ML +G      V+P+ ++++  I+AC+++GA      IH +   + +  D  + +ALIDM
Sbjct: 367 MLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDM 426

Query: 352 YMKCGSLDEARRIFYSM--TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
             KCG ++  R++F  M  + + V+S++ MI   G++G G+ AL+ F++M T G   +++
Sbjct: 427 CAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEI 486

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            ++ VL ACSH+GL  +G   F SM++  G+ P  +HY+CLVDLL RAG L++A N++ +
Sbjct: 487 TYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILN 546

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           MP+K +LALWG+LL AC  H N  L E+V + ++ L ++  G +VLL+N+Y DAG W+  
Sbjct: 547 MPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDV 606

Query: 530 LRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570
           +R+R  +R+  ++K  G+S IEI   +  F++ +    +SE
Sbjct: 607 VRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESE 647



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 218/453 (48%), Gaps = 43/453 (9%)

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
            I   +T+  N++I     + NPQ AL+F+  M+   +  +N+T+P +LKAC  L  L+ 
Sbjct: 12  SISHKDTFHWNSLI-AKNATQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLP 70

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF----EGSEIKDLVSWNLVLR 186
             ++H  + ++G   D F    L+  Y KCGH   A  VF    EGS   D+VSW  ++ 
Sbjct: 71  TLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGS--VDVVSWTALIS 128

Query: 187 GFVECGEMGKAREVFDEMPQK-----------DAISWSIMIDGYRK-------KKGDISS 228
            +   G + +A + F  M              D +S   ++            ++G    
Sbjct: 129 AYSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVH 188

Query: 229 ARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP--ERNVFSWSIMIDGYAQHG 286
             ++     +   +  NSM+  Y+   D+  A ++FN +P  +R+V SW+ +I G+  +G
Sbjct: 189 GLVVKYGFGVSTHLG-NSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNG 247

Query: 287 NPKEALYLFREMLCQG---VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR----IT 339
             + AL  F +M+ +G   V P+ ++V+  + +CA++G ++   W+H ++        + 
Sbjct: 248 EAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVA 307

Query: 340 MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
            D++V TAL+DM+ +CG+L  AR IF  +  KNV+ ++ MIAG       EEAL+ F QM
Sbjct: 308 KDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQM 367

Query: 400 ETEG------IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
             EG      +  + +  + V+ ACS  G A+    +        G++      S L+D+
Sbjct: 368 LMEGNMVGVEVKPNAVTLVSVIAACSRLG-ASRSASMIHKYAVATGLDQDARIASALIDM 426

Query: 454 LSRAGELEQALNIVESMPMKPNLAL-WGTLLLA 485
            ++ G++E    +   M       + W +++ A
Sbjct: 427 CAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGA 459


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 165/508 (32%), Positives = 273/508 (53%), Gaps = 9/508 (1%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           NM  A +LF+ +   N   +N MI GY ++    +A   ++ +++     D  +    L 
Sbjct: 308 NMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALS 367

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           A  V+ G  EG ++HG  +K     ++ V N ++ MY KCG +  A  +F+  EI+D VS
Sbjct: 368 AAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVS 427

Query: 181 WNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKK----GDISSARIL 232
           WN ++    +    GK    F  M     + D  ++  ++     ++    G     RI+
Sbjct: 428 WNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRII 487

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
              M +K  +  ++++D Y+K G +  A+++   + E+ + SW+ +I G++     +++ 
Sbjct: 488 KSGMGLKMFVG-SALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQ 546

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
             F  ML  GV PD  +    +  CA +  + LGK IH  M +  +  D+ + + L+DMY
Sbjct: 547 RFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMY 606

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCG++ ++  +F    K++ +++N MI G   +G GEEAL+ F  M  E I  +   F+
Sbjct: 607 SKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFV 666

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
            VL ACSH G A +G   FQ M     +EP+LEHYSC+VD+L R+G++E+AL +++ MP 
Sbjct: 667 SVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQVEEALRLIQDMPF 726

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
           + +  +W TLL  C+   NV +AE     L++L  +D   Y LLSNIYADAGMW+   +I
Sbjct: 727 EADAIIWRTLLSICKIQGNVEVAEKAASSLLKLDPEDSSAYTLLSNIYADAGMWQQVSKI 786

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFV 560
           R+ MR   +KKE G S IE+   +  F+
Sbjct: 787 RQTMRSHNLKKEPGCSWIEVKDEVHTFL 814



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 117/423 (27%), Positives = 197/423 (46%), Gaps = 53/423 (12%)

Query: 114 TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS 173
           T+  + + C     L  G E H  ++  GF   VFV N LI MY KC  +  A  VFE  
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK-DAISWSIMIDGYRKKKGDISSA--- 229
             +D+VSWN ++ G    G M  A+ VF+ MP   D +SW+ +I GY +  GDI  +   
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQN-GDIQKSIAV 144

Query: 230 -------RILFEHMPIK-----------------------------DLISWNSMIDGYAK 253
                   ++F+H  +                              D+++ ++++D YAK
Sbjct: 145 FLKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAK 204

Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313
              L  +  +F+E+P++N  SWS  I G  Q+      L LF+EM  +G+     +    
Sbjct: 205 CNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASV 264

Query: 314 ISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNV 373
             +CA + A  LG  +H    ++    D+IV TA +DMY KC ++ +A ++F  +   N+
Sbjct: 265 FRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNL 324

Query: 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS----HS-GLATEGY 428
            SYN MI G   N  G +A K F Q++      D++   G L A +    HS GL   G 
Sbjct: 325 QSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGL 384

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
            I  ++  +  +       + ++D+  + G L +A  + + M ++  ++ W  ++ AC  
Sbjct: 385 AIKSNLSSNICVA------NAILDMYGKCGALVEASGLFDEMEIRDPVS-WNAIITACEQ 437

Query: 489 HQN 491
           +++
Sbjct: 438 NES 440



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 125/419 (29%), Positives = 219/419 (52%), Gaps = 21/419 (5%)

Query: 62  MDQAERLFNQI-YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           M+ A+ +FN + +  +    N++I GY Q+ + QK+++ ++ M+  G++ D+ T    LK
Sbjct: 106 MELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAVSLK 165

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C +L   V G +IHG  V+MGF  DV   + L+ MY+KC  +  +  VF     K+ +S
Sbjct: 166 ICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDKNWIS 225

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKD-AISWSIMIDGYRKKKGDISSARI---LFEHM 236
           W+  + G V+  ++ +  ++F EM +K   +S S     +R   G +S++R+   L  H 
Sbjct: 226 WSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAG-LSASRLGTQLHCHA 284

Query: 237 PI----KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
                  D+I   + +D YAK  ++  A +LF+ +P+ N+ S++ MI GYA++    +A 
Sbjct: 285 LKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAF 344

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            LF ++       D +S+ GA+SA A +     G  +H    +S ++ ++ V  A++DMY
Sbjct: 345 KLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMY 404

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCG+L EA  +F  M  ++ +S+N +I     N    + L  F  M    +  D+  + 
Sbjct: 405 GKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYG 464

Query: 413 GVLIACS-----HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466
            VL AC+      +G+   G RI +S     G+  K+   S LVD+ S+ G +E+A  I
Sbjct: 465 SVLKACAGQRAFSNGMEVHG-RIIKS-----GMGLKMFVGSALVDMYSKCGMMEEAEKI 517



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 145/552 (26%), Positives = 251/552 (45%), Gaps = 66/552 (11%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ +  +F+++   N    +  I G  Q+    + L  +  M+RKG+ V   TY  V +
Sbjct: 207 SLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFR 266

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           +C  L     GT++H   +K  F  DV V    + MY+KC +M  A  +F      +L S
Sbjct: 267 SCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQS 326

Query: 181 WNLVLRGFV--ECG--------EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR 230
           +N ++ G+   E G        ++ K    FDE+    A+S + +I G+        S  
Sbjct: 327 YNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGH--------SEG 378

Query: 231 ILFEHMPIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
           +    + IK  +S      N+++D Y K G LV A  LF+EM  R+  SW+ +I    Q+
Sbjct: 379 LQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQN 438

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
            +  + L  F  ML   + PD  +    + ACA   A   G  +H  + +S + + M V 
Sbjct: 439 ESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVG 498

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
           +AL+DMY KCG ++EA +I Y + ++ ++S+N +I+G  +    E++ + F+ M   G+ 
Sbjct: 499 SALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVE 558

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY--SCLVDLLSRAGEL--- 460
            D+  +  VL  C++      G +I   M +   +E   + Y  S LVD+ S+ G +   
Sbjct: 559 PDNFTYATVLDTCANLATVGLGKQIHAQMIK---LELLSDVYITSTLVDMYSKCGNMHDS 615

Query: 461 ----------------------------EQALNIVESM---PMKPNLALWGTLLLACRNH 489
                                       E+AL + E M    +KPN A + ++L AC + 
Sbjct: 616 LLMFRKAPKRDSVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHV 675

Query: 490 QNVTLAEVVVEGLVELKADDCGL--YVLLSNIYADAGMWEHALRIRKMM--RKRKIKKET 545
            N        + +  + A +  L  Y  + +I   +G  E ALR+ + M      I   T
Sbjct: 676 GNAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRT 735

Query: 546 GRSVIEIDGNIK 557
             S+ +I GN++
Sbjct: 736 LLSICKIQGNVE 747


>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
 gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
          Length = 702

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 163/503 (32%), Positives = 277/503 (55%), Gaps = 9/503 (1%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D A + F +  +PN     TM+ G+ ++ N  ++   +  M  + ++  N      ++
Sbjct: 179 DLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQ 238

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C +     E + +  E+ +   +    ++NG    Y + G +  AR +      +++ +
Sbjct: 239 RCEI----DEASRLFEEMPERDSVSWTTMING----YVRIGKLDEARELLNEMPYRNIGA 290

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKD 240
              ++ G+++C ++ +AR  FDE+   D + W+ MI GY    G I+ A  L + M  KD
Sbjct: 291 QTAMISGYIQCNKVDEARRFFDEIGTWDVVCWNAMIAGY-AHHGRINEALCLSKRMVNKD 349

Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLC 300
           +++WN+MI  YA++G +  A ++F EM ER++ SW+ +I G+  +G   +AL  F  M  
Sbjct: 350 MVTWNTMISCYAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGH 409

Query: 301 QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360
           +G +PD +S    +S+CA + AL +G  +H  + +      ++V  ALI MY KCG + E
Sbjct: 410 EGKKPDQLSFACGLSSCATIAALQVGNQLHQVVVKGGYLNYLVVNNALITMYAKCGRILE 469

Query: 361 ARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420
           A  +F  +   +VIS+N +I G  +NG+G+EALK F +M +EG+  D++ F+G+L AC+H
Sbjct: 470 AGLVFNGICHADVISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNH 529

Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
           +G+   G ++F+ M +   IEP  EHY+C+VDLL R G L++A  IV  M +K    +WG
Sbjct: 530 AGMVDHGLKLFKCMSKVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVRGMKVKATAGVWG 589

Query: 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540
            LL ACR H N+ L  +    L E +      YVLLSNI+A+A  W     +R +M    
Sbjct: 590 ALLGACRAHGNLELGRLAAHKLSEFEPHKTSNYVLLSNIHAEANRWNEVQEVRMLMNASS 649

Query: 541 IKKETGRSVIEIDGNIKEFVSGE 563
             KE G S +E+   +  F+S +
Sbjct: 650 TVKEPGCSWVEVRNQVHGFLSDD 672



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 140/535 (26%), Positives = 247/535 (46%), Gaps = 69/535 (12%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           ++ A  LF+++ + N    NTM+ GY  +    +A   +V M R+ L    +++  ++  
Sbjct: 22  INAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVIMPRRDL----FSWTLMI-T 76

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C    G VE      + +   +   V   N +I  Y K G +  A+ +F+   +K+L+SW
Sbjct: 77  CYTRNGEVEKARELFDSLPCSYRKGVACWNAMISGYVKKGRVNEAKRLFDEMPVKNLISW 136

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK-------------------- 221
           N +L G+ +  +M    E F+EM ++D +SW++M+DG+ +                    
Sbjct: 137 NSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQVGDLDSAWKFFQETQKPNVV 196

Query: 222 ----------KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271
                     + G+I  +R LF+ MP ++++SWN+MI  Y +  ++  A +LF EMPER+
Sbjct: 197 SWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEEMPERD 256

Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACA---------QVGA 322
             SW+ MI+GY + G   EA  L  EM  + +      + G I             ++G 
Sbjct: 257 SVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTAMISGYIQCNKVDEARRFFDEIGT 316

Query: 323 LDLGKW---IHVFMKRSRI-----------TMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
            D+  W   I  +    RI             DM+    +I  Y + G +D A +IF  M
Sbjct: 317 WDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTWNTMISCYAQVGQMDRAVKIFEEM 376

Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
            +++++S+N +IAG  +NG   +ALK FA M  EG   D L F   L +C+       G 
Sbjct: 377 GERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQLSFACGLSSCATIAALQVGN 436

Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL--LAC 486
           ++ Q + +  G    L   + L+ + ++ G + +A  +V +     ++  W +L+   A 
Sbjct: 437 QLHQVVVKG-GYLNYLVVNNALITMYAKCGRILEA-GLVFNGICHADVISWNSLIGGYAI 494

Query: 487 RNHQNVTLA---EVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
             +    L    E+  EG+    A D   ++ + +    AGM +H L++ K M K
Sbjct: 495 NGYGKEALKLFEEMASEGM----APDEVTFIGILSACNHAGMVDHGLKLFKCMSK 545



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 194/399 (48%), Gaps = 76/399 (19%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           +    N +I +Y+K G +  AR++F+    ++LVSWN ++ G++  G+  +A ++F  MP
Sbjct: 5   NTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVIMP 64

Query: 206 QKDAISWSIMID--------------------GYRK-------------KKGDISSARIL 232
           ++D  SW++MI                      YRK             KKG ++ A+ L
Sbjct: 65  RRDLFSWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMISGYVKKGRVNEAKRL 124

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
           F+ MP+K+LISWNSM+ GY +   +    + FNEM ER+V SW++M+DG+ Q G+   A 
Sbjct: 125 FDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQVGDLDSAW 184

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGAL-------------DLGKW---IHVFMKRS 336
             F+E      +P+V+S +  +S  A+ G +             ++  W   I  +++R 
Sbjct: 185 KFFQETQ----KPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRC 240

Query: 337 RIT-----------MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
            I             D +  T +I+ Y++ G LDEAR +   M  +N+ +   MI+G   
Sbjct: 241 EIDEASRLFEEMPERDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTAMISGYIQ 300

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIA-CSHSGLATEGYRIFQSMKRHCGIEPKL 444
               +EA + F ++ T      D++    +IA  +H G   E   + + M     +   +
Sbjct: 301 CNKVDEARRFFDEIGTW-----DVVCWNAMIAGYAHHGRINEALCLSKRM-----VNKDM 350

Query: 445 EHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
             ++ ++   ++ G++++A+ I E M  + +L  W +L+
Sbjct: 351 VTWNTMISCYAQVGQMDRAVKIFEEMGER-DLVSWNSLI 388



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 150/301 (49%), Gaps = 21/301 (6%)

Query: 176 KDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEH 235
           K+ V++N ++  + + G +  AR +FD+MP+++ +SW+ M+ GY    G    A  LF  
Sbjct: 4   KNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYL-HNGKFDEAYKLFVI 62

Query: 236 MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP---ERNVFSWSIMIDGYAQHGNPKEAL 292
           MP +DL SW  MI  Y + G++  A++LF+ +P    + V  W+ MI GY + G   EA 
Sbjct: 63  MPRRDLFSWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMISGYVKKGRVNEAK 122

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            LF EM  +    ++IS    ++   Q   + LG  +  F +      D++    ++D +
Sbjct: 123 RLFDEMPVK----NLISWNSMLAGYTQNRKMRLG--LEFFNEMDE--RDVVSWNLMVDGF 174

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
           ++ G LD A + F    K NV+S+  M++G   NG   E+ + F QM +  I   + +  
Sbjct: 175 IQVGDLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNAMIS 234

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
             +  C       E  R+F+ M     +      ++ +++   R G+L++A  ++  MP 
Sbjct: 235 AYVQRCE----IDEASRLFEEMPERDSVS-----WTTMINGYVRIGKLDEARELLNEMPY 285

Query: 473 K 473
           +
Sbjct: 286 R 286



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 157/343 (45%), Gaps = 50/343 (14%)

Query: 204 MPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQL 263
           M +K+ ++++ MI  Y  K G I++AR LF+ MP ++L+SWN+M+ GY   G    A +L
Sbjct: 1   MAEKNTVTYNSMISVY-AKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKL 59

Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL 323
           F  MP R++FSW++MI  Y ++G  ++A  LF  + C   R  V        AC      
Sbjct: 60  FVIMPRRDLFSWTLMITCYTRNGEVEKARELFDSLPCS-YRKGV--------AC------ 104

Query: 324 DLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383
               W                  A+I  Y+K G ++EA+R+F  M  KN+IS+N M+AG 
Sbjct: 105 ----W-----------------NAMISGYVKKGRVNEAKRLFDEMPVKNLISWNSMLAGY 143

Query: 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443
             N      L+ F +M+   +   +L+  G +      G     ++ FQ  ++     P 
Sbjct: 144 TQNRKMRLGLEFFNEMDERDVVSWNLMVDGFI----QVGDLDSAWKFFQETQK-----PN 194

Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLV 503
           +  +  ++   +R G + ++  + + MP + N+  W  ++ A      +  A  + E   
Sbjct: 195 VVSWVTMLSGFARNGNILESRRLFDQMPSR-NIVSWNAMISAYVQRCEIDEASRLFE--- 250

Query: 504 ELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
           E+   D   +  + N Y   G  + A  +   M  R I  +T 
Sbjct: 251 EMPERDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTA 293


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 177/517 (34%), Positives = 287/517 (55%), Gaps = 8/517 (1%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           +A+RLF+ +   +    N MI G +       A+   + M+ +G+  ++ T   VL   G
Sbjct: 162 EAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVG 221

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
               L  G  +HG  V+  F   V V  GL+ MY+KC  +  AR +F+   +++ VSW+ 
Sbjct: 222 EAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSA 281

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR----KKKGDISSARILFEHM--- 236
           ++ G+V    M +A E+FD+M  KDA+  + +  G       K  D+S  R L  ++   
Sbjct: 282 MIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKL 341

Query: 237 -PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
             + D++  N+++  YAK G +  A + F+ M  ++  S+S ++ G  Q+GN   AL +F
Sbjct: 342 GXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIF 401

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
           R M   G+ PD+ +++G + AC+ + AL  G   H ++       D ++  ALIDMY KC
Sbjct: 402 RMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKC 461

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
           G +  AR +F  M + +++S+N MI G G++G G EAL  F  +   G+  DD+ F+ +L
Sbjct: 462 GKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLL 521

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
            +CSHSGL  EG   F +M R   I P++EH  C+VD+L RAG +++A + + +MP +P+
Sbjct: 522 SSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPD 581

Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535
           + +W  LL ACR H+N+ L E V + +  L  +  G +VLLSNIY+ AG W+ A  IR  
Sbjct: 582 VRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRIT 641

Query: 536 MRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            +   +KK  G S IEI+G +  FV G+   +Q  ++
Sbjct: 642 QKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQI 678



 Score =  209 bits (531), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 158/564 (28%), Positives = 261/564 (46%), Gaps = 27/564 (4%)

Query: 8   KFSLKNPLVSLLQI---SKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQ 64
           +  +KN  + LL+    SK+ T   +I      N    +   L +L     S N + +  
Sbjct: 4   RXEVKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVL-- 61

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A RLF++I  P+  + N +IR Y  +     A+  Y +M   G+  + YTYPFVLKAC  
Sbjct: 62  ARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSG 121

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           L+ + +G EIH      G   DVFV   L+  Y+KCG +  A+ +F     +D+V+WN +
Sbjct: 122 LLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAM 181

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGD---ISSARILFEHMPIKD- 240
           + G    G    A ++  +M ++     S  I G     G+   +   + L  +   +  
Sbjct: 182 IAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSF 241

Query: 241 ---LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
              ++    ++D YAK   L+ A+++F+ M  RN  SWS MI GY      KEAL LF +
Sbjct: 242 DNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQ 301

Query: 298 MLCQ-GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
           M+ +  + P  +++   + ACA++  L  G+ +H ++ +    +D+++   L+ MY KCG
Sbjct: 302 MILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCG 361

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
            +D+A R F  M  K+ +S++ +++G   NG    AL  F  M+  GI  D    LGVL 
Sbjct: 362 VIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLP 421

Query: 417 ACSH-----SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
           ACSH      G  + GY I +      G        + L+D+ S+ G++  A  +   M 
Sbjct: 422 ACSHLAALQHGFCSHGYLIVR------GFATDTLICNALIDMYSKCGKISFAREVFNRMD 475

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLSNIYADAGMWEHA 529
            + ++  W  +++    H     A  +   L+   LK DD     LLS+      + E  
Sbjct: 476 -RHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGR 534

Query: 530 LRIRKMMRKRKIKKETGRSVIEID 553
           L    M R   I       +  +D
Sbjct: 535 LWFDAMSRDFSIVPRMEHCICMVD 558


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 190/630 (30%), Positives = 309/630 (49%), Gaps = 83/630 (13%)

Query: 24  TTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI--YQPNTYMHN 81
           T +  L   A L  +D    P   + L+ +  +   L    A   F+ +   + +T +HN
Sbjct: 74  TLSPDLATPAALFRSDPDPGPVAATSLVAAHAAAGRLR--DAAAFFDAVPPARRDTVLHN 131

Query: 82  TMIRGYTQSSNPQKALS-FYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG--TEIHGEV 138
            M+  + ++S    A+S F+  +    L  D+Y++  ++ A G +  L     T++H  V
Sbjct: 132 AMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSV 191

Query: 139 VKMGFLCDVFVVNGLIGMYSKC----------------------------------GHMG 164
           +K G    + V N LI +Y KC                                  G + 
Sbjct: 192 LKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVN 251

Query: 165 CARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDG-- 218
            ARSVFE  + K  V WN ++ G+V+ G    A E+F  M  +    D  +++ ++    
Sbjct: 252 AARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACA 311

Query: 219 ------------------------------------YRKKKGDISSARILFEHMPIKDLI 242
                                                  K G I  A+ +F+ M +KD++
Sbjct: 312 NAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVV 371

Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
           SWN+++ GY   G L  A ++F  MP +N  SW +M+ GY   G  ++AL LF +M  + 
Sbjct: 372 SWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAED 431

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           V+P   +  GAI+AC ++GAL  G+ +H  + +           AL+ MY KCG++++AR
Sbjct: 432 VKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDAR 491

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
            +F  M   + +S+N MI+ LG +G G EAL+ F QM  EGI  D + FL +L AC+H+G
Sbjct: 492 LVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAG 551

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
           L  EG+  F+SMKR  GI P  +HY+ L+DLL R+G + +A +++++MP +P  ++W  +
Sbjct: 552 LVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAI 611

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
           L  CR + ++       + L  +     G Y+LLSN Y+ AG W  A R+RK+MR R +K
Sbjct: 612 LSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVK 671

Query: 543 KETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           KE G S IE+   I  F+ G+    +++E+
Sbjct: 672 KEPGCSWIEVGSKIHVFLVGDTKHPEAQEV 701



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 132/488 (27%), Positives = 225/488 (46%), Gaps = 66/488 (13%)

Query: 1   MKTLAAAKFSLKNPLVSLL---QISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSP 57
           +K+ AAA  S+ N L++L       + +    ++L ++   D       L+   M +   
Sbjct: 192 LKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKD------DLTWTTMVVGYV 245

Query: 58  NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF 117
              +++ A  +F ++      + N MI GY QS     A   +  M  + + +D +T+  
Sbjct: 246 RRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTS 305

Query: 118 VLKACGVLMGLVEGTEIHGEVVKM--GFLCDVF--VVNGLIGMYSKCGHMGCARSVFEGS 173
           VL AC      V G  +HG+++++   F+ +    V N L+ +YSK G +  A+ +F+  
Sbjct: 306 VLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTM 365

Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILF 233
            +KD+VSWN +L G+++ G + KA EVF  MP K+ +SW +M+ GY    G    A  LF
Sbjct: 366 NLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGY-VHGGLSEDALKLF 424

Query: 234 EHMPIKDL---------------------------------------ISWNSMIDGYAKI 254
             M  +D+                                        + N+++  YAK 
Sbjct: 425 NQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKC 484

Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
           G +  A+ +F  MP  +  SW+ MI    QHG+ +EAL LF +M+ +G+ PD IS +  +
Sbjct: 485 GAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTIL 544

Query: 315 SACAQVGALDLGKWIHVF--MKRS-RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
           +AC   G +D G   H F  MKR   I+        LID+  + G + EAR +  +M  +
Sbjct: 545 TACNHAGLVDEG--FHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFE 602

Query: 372 NVIS-YNVMIAGLGMNG---FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
              S +  +++G   NG   FG  A     +M    IP+ D  ++ +    S +G   + 
Sbjct: 603 PTPSIWEAILSGCRTNGDMEFGAYAADQLFRM----IPQHDGTYILLSNTYSAAGRWVDA 658

Query: 428 YRIFQSMK 435
            R+ + M+
Sbjct: 659 ARVRKLMR 666


>gi|413952592|gb|AFW85241.1| hypothetical protein ZEAMMB73_384525 [Zea mays]
          Length = 683

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 175/547 (31%), Positives = 288/547 (52%), Gaps = 42/547 (7%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           M++A+RLF+++   N    NTMI G+      +KAL+ +  M  K    D+ +       
Sbjct: 148 MEEAQRLFDEMPHRNASSWNTMITGFFAVGQMRKALNVFAAMPDK----DSASL------ 197

Query: 122 CGVLMGLVEGTEIH-------GEVVKMGFLCDVFVVNGLIGMYSKCG------------- 161
             ++ G +    +H         +  M     V   N LI  Y + G             
Sbjct: 198 SAMVSGFIRNGRLHEADDLLTKRLTVMDMDKAVGAFNTLIAAYGQTGRVTDARRLFSMIP 257

Query: 162 -----HMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMI 216
                H G  R VFE    +++VSWN ++  ++  G++  AR +FDEMP KD +SW+ MI
Sbjct: 258 KTQNQHKGHKRMVFE----RNVVSWNSMMMCYIRTGDVCSARALFDEMPHKDLVSWNTMI 313

Query: 217 DGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
            GY  +  ++  A  LF  +P  D ++WN MI G+ + GD+  A+  F+ MPER+  +W+
Sbjct: 314 AGY-TQASEMEEAEKLFWEVPDPDAVTWNLMIRGFTQKGDVEHARGFFDRMPERSTITWN 372

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS 336
            MI GY Q+ +    + LF+ ML  G RPD  ++   ++ACA +  L LG  +H  +++S
Sbjct: 373 TMISGYEQNEDYDSTIKLFQRMLEVGERPDHHTLSSVLAACASLAMLRLGAQLHQLIEKS 432

Query: 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSM-TKKNVISYNVMIAGLGMNGFGEEALKC 395
            +  D     AL+ MY +CG L  A+ IF  M T+++++S+N +I G    G   EAL+ 
Sbjct: 433 FLP-DTATNNALMTMYSRCGELISAKAIFGHMHTQRDIVSWNALIGGYEQQGNATEALRL 491

Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
           F +M +  +    + F+ +L AC ++GL +EG  +F +M    G+   +EHY+ LV+L+ 
Sbjct: 492 FEEMRSAKVMPTHITFISLLSACGNAGLVSEGRVVFHTMVHDYGLAASVEHYAALVNLIG 551

Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515
           R G+LE AL +++SMP+ P+ A+WG  L AC   +N  LAE+    L ++  D    YVL
Sbjct: 552 RHGQLEDALELIKSMPIAPDRAVWGAFLGACTAKKNEPLAEMAANALSKIDPDSSAPYVL 611

Query: 516 LSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELV 575
           + N++A  G W  A  +R+ M +  I K  G S I++   +  F+SG+     + E+  V
Sbjct: 612 MHNLHAHEGRWGSASLVREDMERLGIHKHPGYSWIDLHDKVHVFISGDTSHPLTHEIFSV 671

Query: 576 IQSFVKT 582
           ++ F ++
Sbjct: 672 LECFNRS 678



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 169/351 (48%), Gaps = 38/351 (10%)

Query: 153 LIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISW 212
           L+G+  + G    AR +F+    + +V+WN +L       ++  AR  FD MP +D ISW
Sbjct: 43  LVGLLRR-GRFSAARRLFDALPARSVVTWNSLLAALSRGSDVRAARCFFDAMPVRDIISW 101

Query: 213 SIMIDGYRK--KKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER 270
           + ++  Y +  +  D+++AR LF  MP +D +SW++++  Y + G +  AQ+LF+EMP R
Sbjct: 102 NTLLSAYARSLQPNDLAAARRLFYEMPQRDAVSWSTLLGAYTRRGLMEEAQRLFDEMPHR 161

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           N  SW+ MI G+   G  ++AL +F  M  +    D  S+   +S   + G L       
Sbjct: 162 NASSWNTMITGFFAVGQMRKALNVFAAMPDK----DSASLSAMVSGFIRNGRLHEAD--D 215

Query: 331 VFMKR-SRITMDMIVQT--ALIDMYMKCGSLDEARRIFYSMTK--------------KNV 373
           +  KR + + MD  V     LI  Y + G + +ARR+F  + K              +NV
Sbjct: 216 LLTKRLTVMDMDKAVGAFNTLIAAYGQTGRVTDARRLFSMIPKTQNQHKGHKRMVFERNV 275

Query: 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA-CSHSGLATEGYRIFQ 432
           +S+N M     M  +      C A+   + +P  DL+    +IA  + +    E  ++F 
Sbjct: 276 VSWNSM-----MMCYIRTGDVCSARALFDEMPHKDLVSWNTMIAGYTQASEMEEAEKLFW 330

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
            +      +P    ++ ++   ++ G++E A    + MP +  +  W T++
Sbjct: 331 EVP-----DPDAVTWNLMIRGFTQKGDVEHARGFFDRMPERSTIT-WNTMI 375



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 146/287 (50%), Gaps = 26/287 (9%)

Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF---VECGEMGKAREVFDE 203
           V   N L+   S+   +  AR  F+   ++D++SWN +L  +   ++  ++  AR +F E
Sbjct: 67  VVTWNSLLAALSRGSDVRAARCFFDAMPVRDIISWNTLLSAYARSLQPNDLAAARRLFYE 126

Query: 204 MPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQL 263
           MPQ+DA+SWS ++  Y  ++G +  A+ LF+ MP ++  SWN+MI G+  +G +  A  +
Sbjct: 127 MPQRDAVSWSTLLGAY-TRRGLMEEAQRLFDEMPHRNASSWNTMITGFFAVGQMRKALNV 185

Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA----ISACAQ 319
           F  MP+++  S S M+ G+ ++G   EA  L  + L      D+   +GA    I+A  Q
Sbjct: 186 FAAMPDKDSASLSAMVSGFIRNGRLHEADDLLTKRLTVM---DMDKAVGAFNTLIAAYGQ 242

Query: 320 VGALDLGKWI----------HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369
            G +   + +          H   KR     +++   +++  Y++ G +  AR +F  M 
Sbjct: 243 TGRVTDARRLFSMIPKTQNQHKGHKRMVFERNVVSWNSMMMCYIRTGDVCSARALFDEMP 302

Query: 370 KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
            K+++S+N MIAG       EEA K F +     +P  D +   ++I
Sbjct: 303 HKDLVSWNTMIAGYTQASEMEEAEKLFWE-----VPDPDAVTWNLMI 344



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 114/238 (47%), Gaps = 12/238 (5%)

Query: 41  ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFY 100
           + +P  ++  LM        +++ A   F+++ + +T   NTMI GY Q+ +    +  +
Sbjct: 332 VPDPDAVTWNLMIRGFTQKGDVEHARGFFDRMPERSTITWNTMISGYEQNEDYDSTIKLF 391

Query: 101 VNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC 160
             M   G   D++T   VL AC  L  L  G ++H ++++  FL D    N L+ MYS+C
Sbjct: 392 QRMLEVGERPDHHTLSSVLAACASLAMLRLGAQLH-QLIEKSFLPDTATNNALMTMYSRC 450

Query: 161 GHMGCARSVFEGSEI-KDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY 219
           G +  A+++F      +D+VSWN ++ G+ + G   +A  +F+EM     +   I     
Sbjct: 451 GELISAKAIFGHMHTQRDIVSWNALIGGYEQQGNATEALRLFEEMRSAKVMPTHITFISL 510

Query: 220 RKKKGD---ISSARILFEHMPIKD------LISWNSMIDGYAKIGDLVAAQQLFNEMP 268
               G+   +S  R++F H  + D      +  + ++++   + G L  A +L   MP
Sbjct: 511 LSACGNAGLVSEGRVVF-HTMVHDYGLAASVEHYAALVNLIGRHGQLEDALELIKSMP 567



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 136/327 (41%), Gaps = 52/327 (15%)

Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
           N  + G  + G   AA++LF+ +P R+V +W+ ++   ++  + + A   F  M  +   
Sbjct: 40  NRSLVGLLRRGRFSAARRLFDALPARSVVTWNSLLAALSRGSDVRAARCFFDAMPVR--- 96

Query: 305 PDVISVMGAISACAQ-VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
            D+IS    +SA A+ +   DL     +F +  +   D +  + L+  Y + G ++EA+R
Sbjct: 97  -DIISWNTLLSAYARSLQPNDLAAARRLFYEMPQ--RDAVSWSTLLGAYTRRGLMEEAQR 153

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK----------------- 406
           +F  M  +N  S+N MI G    G   +AL  FA M  +                     
Sbjct: 154 LFDEMPHRNASSWNTMITGFFAVGQMRKALNVFAAMPDKDSASLSAMVSGFIRNGRLHEA 213

Query: 407 DDLI---------------FLGVLIACSHSGLATEGYRIF----QSMKRHCG-----IEP 442
           DDL+               F  ++ A   +G  T+  R+F    ++  +H G      E 
Sbjct: 214 DDLLTKRLTVMDMDKAVGAFNTLIAAYGQTGRVTDARRLFSMIPKTQNQHKGHKRMVFER 273

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
            +  ++ ++    R G++  A  + + MP K +L  W T++        +  AE +    
Sbjct: 274 NVVSWNSMMMCYIRTGDVCSARALFDEMPHK-DLVSWNTMIAGYTQASEMEEAEKL---F 329

Query: 503 VELKADDCGLYVLLSNIYADAGMWEHA 529
            E+   D   + L+   +   G  EHA
Sbjct: 330 WEVPDPDAVTWNLMIRGFTQKGDVEHA 356


>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
          Length = 505

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 140/338 (41%), Positives = 225/338 (66%)

Query: 224 GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
           G ++ AR +F+ M ++D+++WN MI GY K GD   A++LF+ MPERNV SW+ +I GYA
Sbjct: 127 GHVADARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHARELFDAMPERNVVSWTTVIGGYA 186

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
           Q   P++A+ +FR M  +G+  D ++++  ++AC  +GA+DLG+W+H F+ R  +  ++ 
Sbjct: 187 QMKRPEKAVEVFRRMQVEGIEADGVALLSVLAACGDLGAVDLGEWVHRFVVRRGLCQEIP 246

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           +  ++IDMYMKCG +++A  +F  M +K+V+++  +IAG  ++G G +A++ F +ME E 
Sbjct: 247 LMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFCRMEREN 306

Query: 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
           +  + + FL +L ACSH GL   G   F  M     I+P++EHY C+VDLL RAG L++A
Sbjct: 307 MAPNAVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPRVEHYGCMVDLLGRAGCLKEA 366

Query: 464 LNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA 523
            ++V++MP+K N A+WG LL A R H +  L E  +  L+EL+ ++ G Y+LLSNI+A+ 
Sbjct: 367 QDLVKNMPLKANAAIWGALLAAARTHGDAGLGEQALLHLIELEPNNSGNYILLSNIFAEQ 426

Query: 524 GMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
             W    ++RK MR+R ++   G S IE+DG + EF S
Sbjct: 427 ERWGDVSKLRKAMRERGLRNVPGASSIEVDGMVHEFTS 464



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 153/299 (51%), Gaps = 45/299 (15%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           D  V + L+ +Y  CGH+  ARSVF+   ++D+V+WN+++ G+V+ G+   ARE+FD MP
Sbjct: 112 DAHVSSSLVQLYCTCGHVADARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHARELFDAMP 171

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK----------------------DLIS 243
           +++ +SW+ +I GY + K    +  + F  M ++                      DL  
Sbjct: 172 ERNVVSWTTVIGGYAQMKRPEKAVEV-FRRMQVEGIEADGVALLSVLAACGDLGAVDLGE 230

Query: 244 W-----------------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
           W                 NS+ID Y K G +  A ++F  M E++V +W+ +I G+A HG
Sbjct: 231 WVHRFVVRRGLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHG 290

Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW-IHVFMKRSRITMDMIVQ 345
              +A+ +F  M  + + P+ ++ +  +SAC+ VG  DLG+W  ++ + + RI   +   
Sbjct: 291 LGLQAVEMFCRMERENMAPNAVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPRVEHY 350

Query: 346 TALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGL---GMNGFGEEALKCFAQME 400
             ++D+  + G L EA+ +  +M  K N   +  ++A     G  G GE+AL    ++E
Sbjct: 351 GCMVDLLGRAGCLKEAQDLVKNMPLKANAAIWGALLAAARTHGDAGLGEQALLHLIELE 409



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 110/234 (47%), Gaps = 11/234 (4%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            A  LF+ + + N     T+I GY Q   P+KA+  +  M+ +G+  D      VL ACG
Sbjct: 162 HARELFDAMPERNVVSWTTVIGGYAQMKRPEKAVEVFRRMQVEGIEADGVALLSVLAACG 221

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            L  +  G  +H  VV+ G   ++ ++N +I MY KCG +  A  VFEG E K +V+W  
Sbjct: 222 DLGAVDLGEWVHRFVVRRGLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTT 281

Query: 184 VLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHM--- 236
           ++ GF   G   +A E+F  M ++    +A+++  ++       G     R  F  M   
Sbjct: 282 LIAGFALHGLGLQAVEMFCRMERENMAPNAVTFLAILSAC-SHVGLTDLGRWYFNIMVSQ 340

Query: 237 -PIKDLIS-WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
             IK  +  +  M+D   + G L  AQ L   MP + N   W  ++     HG+
Sbjct: 341 YRIKPRVEHYGCMVDLLGRAGCLKEAQDLVKNMPLKANAAIWGALLAAARTHGD 394



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 85/181 (46%), Gaps = 33/181 (18%)

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL---------- 383
           +   +  D  V ++L+ +Y  CG + +AR +F  M  ++V+++NVMIAG           
Sbjct: 105 RTGHVASDAHVSSSLVQLYCTCGHVADARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHAR 164

Query: 384 ----------------GMNGFG-----EEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
                            + G+      E+A++ F +M+ EGI  D +  L VL AC   G
Sbjct: 165 ELFDAMPERNVVSWTTVIGGYAQMKRPEKAVEVFRRMQVEGIEADGVALLSVLAACGDLG 224

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
               G  + + + R  G+  ++   + ++D+  + G +E+A+ + E M  K ++  W TL
Sbjct: 225 AVDLGEWVHRFVVRR-GLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEK-SVVTWTTL 282

Query: 483 L 483
           +
Sbjct: 283 I 283


>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
 gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
          Length = 690

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 173/508 (34%), Positives = 273/508 (53%), Gaps = 12/508 (2%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A  +F+ + + N      ++ G+      ++ L  +  M+  G   + +T    LKACG 
Sbjct: 58  AGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACG- 116

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
             G   G +IHG  V+ GF     V N L+ MYSK    G AR VF+    ++L +WN +
Sbjct: 117 -GGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSM 175

Query: 185 LRGFVECGEMGKAREVFDEM-----PQKDAISWSIMID-----GYRKKKGDISSARILFE 234
           + G+   G+   +  VF EM      Q D  +++ ++      G  ++   + +A  +  
Sbjct: 176 ISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRG 235

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
             P  + I   +++D Y K   L  A Q+F+ +  RN   W+ +I G+AQ G  KEA+ L
Sbjct: 236 VSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCL 295

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
           FR     GVR D   +   ++  A    ++ GK +H +  ++   +D+ V  +L+DMY+K
Sbjct: 296 FRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLK 355

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
           CG   EA R F  M  +NV+S+  MI G+G +G G EA+  F +M+ EG+  D++ +L +
Sbjct: 356 CGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYLAL 415

Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
           L ACSHSGL  E  R F  + +   + PK EHY+C+VDLL RAGEL +A  ++ SMPM+P
Sbjct: 416 LSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEP 475

Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
            + +W TLL ACR H++V +   V + L+ +  D+   YV+LSNI A+AG W     IR 
Sbjct: 476 TVGVWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRG 535

Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSG 562
            MR++ ++K+ G S  E+D  +  F  G
Sbjct: 536 AMRRKGLRKQGGCSWTEVDKEVHFFYGG 563



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 208/427 (48%), Gaps = 22/427 (5%)

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           M+R+ ++ D      +L+A      L  G ++H  ++K+GF  D  + N LI MY+KCG 
Sbjct: 1   MERRRMIAD------LLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGK 54

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK 222
           +  A  VF+G   +++VSW  ++ GF+  GE  +   +F EM           +    K 
Sbjct: 55  LHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKA 114

Query: 223 KGDISSARILFEHMPIK------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
            G  + A +    + ++      D+++ NS++  Y+K      A+++F+ +P RN+ +W+
Sbjct: 115 CGGGTRAGVQIHGVCVRTGFEGHDVVA-NSLVVMYSKGRWTGDARRVFDVIPSRNLATWN 173

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQ-GVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
            MI GYA  G  +++L +FREM  +   +PD  +    + AC+ +GA   G  +H  M  
Sbjct: 174 SMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAV 233

Query: 336 SRIT--MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
             ++   + I+  AL+D+Y+KC  L  A ++F  + ++N I +  +I G    G  +EA+
Sbjct: 234 RGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAM 293

Query: 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF-QSMKRHCGIEPKLEHYSCLVD 452
             F +  + G+  D  +   V+   +   L  +G ++   + K   G++  +   + LVD
Sbjct: 294 CLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVA--NSLVD 351

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE--LKADDC 510
           +  + G   +A      MP + N+  W  ++     H +   A  + E + E  ++AD+ 
Sbjct: 352 MYLKCGLTGEAGRRFREMPAR-NVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEV 410

Query: 511 GLYVLLS 517
               LLS
Sbjct: 411 AYLALLS 417


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 177/500 (35%), Positives = 275/500 (55%), Gaps = 11/500 (2%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
           N ++   +++ +P  AL  +  +       D+ T+   L AC  L  L     +      
Sbjct: 81  NALLAARSRAGSPGAALRVFRALPSSAR-PDSTTFTLALTACARLGDLDAAEAVRVRAFA 139

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
            G+  DVFV + L+ +YS+CG MG A  VF+G   KD V+W+ ++ GFV  G   +A  +
Sbjct: 140 AGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGM 199

Query: 201 FDEMPQKDAISWSIMIDGY--------RKKKGDISSARILFEHMPIKDLISWNSMIDGYA 252
           +  M +       +++ G           + G     R L   M + D++   S++D YA
Sbjct: 200 YSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRM-DVVIATSLVDMYA 258

Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
           K G    A+Q+F  MP RN  SW+ +I G+AQ+G+  EAL LFREM   G++PD  +++ 
Sbjct: 259 KNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVS 318

Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
           A+ ACA VG L LGK IH F+ R R+    I+ TA++DMY KCGSL+ AR++F  ++ ++
Sbjct: 319 ALLACADVGFLKLGKSIHGFILR-RLEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRD 377

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
           ++ +N MIA  G +G G +AL  F ++   GI  D   F  +L A SHSGL  EG   F 
Sbjct: 378 LVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFD 437

Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV 492
            M    GIEP  +H  C+VDLL+R+G +E+A  ++ SM  +P + +W  LL  C N++ +
Sbjct: 438 RMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKKL 497

Query: 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
            L E + + ++E + +D G+  L+SN+YA A  W+    IRK+M+    KK  G S+IE+
Sbjct: 498 ELGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEV 557

Query: 553 DGNIKEFVSGEIFDVQSEEL 572
            G    FV  +    Q +E+
Sbjct: 558 HGTRHAFVMEDQSHPQHQEI 577



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 172/367 (46%), Gaps = 23/367 (6%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           M  A R+F+ + + +    +TM+ G+  +  P +AL  Y  M+  G+  D      V++A
Sbjct: 162 MGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQA 221

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C +      G  +HG  ++ G   DV +   L+ MY+K GH   AR VF     ++ VSW
Sbjct: 222 CTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSW 281

Query: 182 NLVLRGFVECGEMGKAREVFDEM------PQKDAISWSIMI---DGYRKKKGDISS---A 229
           N ++ GF + G   +A ++F EM      P   A+  +++     G+ K    I      
Sbjct: 282 NALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILR 341

Query: 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
           R+ F+       I   +++D Y+K G L +A++LFN++  R++  W+ MI     HG   
Sbjct: 342 RLEFQ------CILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGH 395

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK-WIHVFMKRSRITMDMIVQTAL 348
           +AL LF+E+   G++PD  +    +SA +  G ++ GK W    +    I         +
Sbjct: 396 DALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCV 455

Query: 349 IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD 408
           +D+  + G ++EA  +  SM  +  I   V +    +N    E  +  A+   E  P+D 
Sbjct: 456 VDLLARSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILESQPED- 514

Query: 409 LIFLGVL 415
              +GVL
Sbjct: 515 ---IGVL 518



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 128/240 (53%), Gaps = 5/240 (2%)

Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERN--VFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
           S+   YA++G L AA+      P     + +W+ ++   ++ G+P  AL +FR  L    
Sbjct: 49  SLAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGSPGAALRVFRA-LPSSA 107

Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
           RPD  +   A++ACA++G LD  + + V    +    D+ V +AL+ +Y +CG++ +A R
Sbjct: 108 RPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIR 167

Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           +F  M +K+ ++++ M+AG    G   EAL  +++M   G+ +D+++ +GV+ AC+ +G 
Sbjct: 168 VFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGN 227

Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
              G  +     RH G+   +   + LVD+ ++ G  + A  +   MP + N   W  L+
Sbjct: 228 TRMGASVHGRFLRH-GMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYR-NAVSWNALI 285



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 6/136 (4%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           + D A ++F  +   N    N +I G+ Q+ +  +AL  +  M   GL  D+      L 
Sbjct: 262 HFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALL 321

Query: 121 ACGVLMGLVEGTEIHGEVV-KMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           AC  +  L  G  IHG ++ ++ F C   +   ++ MYSKCG +  AR +F     +DLV
Sbjct: 322 ACADVGFLKLGKSIHGFILRRLEFQC--ILGTAVLDMYSKCGSLESARKLFNKLSSRDLV 379

Query: 180 SWNLVLRGFVECGEMG 195
            WN ++     CG  G
Sbjct: 380 LWNAMI---ACCGTHG 392


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 177/519 (34%), Positives = 294/519 (56%), Gaps = 15/519 (2%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            A  LF+++   +    N MI GY QS N ++AL+    ++     +D+ T   +L AC 
Sbjct: 203 NARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLSACT 258

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
                  G  IH   +K G   ++FV N LI +Y++ G +   + VF+   ++DL+SWN 
Sbjct: 259 EAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNS 318

Query: 184 VLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSAR-----ILFE 234
           +++ +    +  +A  +F EM     Q D ++  I +     + GDI + R      L +
Sbjct: 319 IIKAYELNEQPLRAISLFQEMRLSRIQPDCLTL-ISLASILSQLGDIRACRSVQGFTLRK 377

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
              ++D+   N+++  YAK+G + +A+ +FN +P  +V SW+ +I GYAQ+G   EA+ +
Sbjct: 378 GWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEM 437

Query: 295 FREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
           +  M  +G +  +  + +  + AC+Q GAL  G  +H  + ++ + +D+ V T+L DMY 
Sbjct: 438 YNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYG 497

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCG L++A  +FY + + N + +N +IA  G +G GE+A+  F +M  EG+  D + F+ 
Sbjct: 498 KCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVT 557

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           +L ACSHSGL  EG   F+ M+   GI P L+HY C+VD+  RAG+LE AL  ++SM ++
Sbjct: 558 LLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQ 617

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
           P+ ++WG LL ACR H NV L ++  E L E++ +  G +VLLSN+YA AG WE    IR
Sbjct: 618 PDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIR 677

Query: 534 KMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
            +   + ++K  G S +E+D  ++ F +G       EE+
Sbjct: 678 SIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEM 716



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 135/479 (28%), Positives = 245/479 (51%), Gaps = 19/479 (3%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALS-FYVNMKRKGLLVDNYTYPFVL 119
           N+  A   F+ I   + Y  N MI GY ++ N  + +  F + M   GL  D  T+P VL
Sbjct: 101 NVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVL 160

Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
           KAC  +   ++G +IH   +K GF+ DV+V   LI +YS+   +G AR +F+   ++D+ 
Sbjct: 161 KACRTV---IDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMG 217

Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARIL----FEH 235
           SWN ++ G+ + G   +A  + + +   D+++   ++     + GD +    +     +H
Sbjct: 218 SWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSAC-TEAGDFNRGVTIHSYSIKH 276

Query: 236 MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
               +L   N +ID YA+ G L   Q++F+ M  R++ SW+ +I  Y  +  P  A+ LF
Sbjct: 277 GLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLF 336

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF-MKRSRITMDMIVQTALIDMYMK 354
           +EM    ++PD ++++   S  +Q+G +   + +  F +++     D+ +  A++ MY K
Sbjct: 337 QEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAK 396

Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKDDLIFLG 413
            G +D AR +F  +   +VIS+N +I+G   NGF  EA++ +  ME EG I  +   ++ 
Sbjct: 397 LGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVS 456

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           VL ACS +G   +G ++   + ++ G+   +   + L D+  + G LE AL++   +P +
Sbjct: 457 VLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-R 514

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLSNI----YADAGMW 526
            N   W TL+     H +   A ++ + +++  +K D      LLS        D G W
Sbjct: 515 VNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQW 573



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 135/280 (48%), Gaps = 11/280 (3%)

Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR-EMLCQGVRP 305
           +++ Y  +G++  A+  F+ +  R+V++W++MI GY + GN  E +  F   ML  G+ P
Sbjct: 92  LVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTP 151

Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
           D  +    + AC  V  +D G  IH    +     D+ V  +LI +Y +  ++  AR +F
Sbjct: 152 DYRTFPSVLKACRTV--ID-GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILF 208

Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
             M  +++ S+N MI+G   +G  +EAL     +       D +  + +L AC+ +G   
Sbjct: 209 DEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRA----MDSVTVVSLLSACTEAGDFN 264

Query: 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
            G  I     +H G+E +L   + L+DL +  G L     + + M ++ +L  W +++ A
Sbjct: 265 RGVTIHSYSIKH-GLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVR-DLISWNSIIKA 322

Query: 486 CR-NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524
              N Q +    +  E  +     DC   + L++I +  G
Sbjct: 323 YELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLG 362



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 106/254 (41%), Gaps = 32/254 (12%)

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
           L   K +H  +  S+   ++ +   L+++Y   G++  AR  F  +  ++V ++N+MI+G
Sbjct: 67  LQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISG 126

Query: 383 LGMNGFGEEALKCFAQ-METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC--- 438
            G  G   E ++CF+  M + G+  D   F  VL AC           +    K HC   
Sbjct: 127 YGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR---------TVIDGNKIHCLAL 177

Query: 439 --GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAE 496
             G    +   + L+ L SR   +  A  + + MP++ ++  W  ++       N   A 
Sbjct: 178 KFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVR-DMGSWNAMISGYCQSGNAKEAL 236

Query: 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNI 556
            +  G   L+A D    V L +   +AG +   + I     K  ++ E            
Sbjct: 237 TLSNG---LRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESEL----------- 282

Query: 557 KEFVSGEIFDVQSE 570
             FVS ++ D+ +E
Sbjct: 283 --FVSNKLIDLYAE 294


>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
 gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
          Length = 838

 Score =  310 bits (795), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 166/524 (31%), Positives = 296/524 (56%), Gaps = 17/524 (3%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMK-RKGLLVDNYTYPFVLK 120
           M+ A ++F +  +P+  +  ++I GY QS +P+ AL+F+  M   + +  D  T   V  
Sbjct: 293 MNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVAS 352

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L     G  +HG V + G    + + N L+ +Y K G +  A ++F     KD++S
Sbjct: 353 ACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIIS 412

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKD-AISWSIMIDGYRKKKGDISSARILFEHMPIK 239
           W+ ++  + + G      ++F+EM  K    +W  ++   R      +    L E M I 
Sbjct: 413 WSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRA----CACISNLEEGMKIH 468

Query: 240 DL-ISW---------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
           +L +++          +++D Y K      A  LFN MP+++V +W+++  GYA +G   
Sbjct: 469 ELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVH 528

Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
           E++++FR ML  G RPD I+++  ++  +++G L     +H F+ ++    +  +  +LI
Sbjct: 529 ESMWVFRNMLSSGTRPDAIALVKILTTISELGILQQAVCLHAFVIKNGFENNQFIGASLI 588

Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DD 408
           ++Y KC S+++A ++F  MT K+V++++ +IA  G +G GEEALK F QM      K ++
Sbjct: 589 EVYAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNN 648

Query: 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468
           + F+ +L ACSHSGL  EG  +F  M     ++P  EHY+ +VDLL R GEL+ AL+++ 
Sbjct: 649 VTFISILSACSHSGLIKEGINMFDIMVNKYKLKPNSEHYAIMVDLLGRMGELDMALDVIN 708

Query: 469 SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528
           +MPM+    +WG LL ACR HQN+ + EV  + L  L  +  G Y+LLSNIY+    W  
Sbjct: 709 NMPMQAGPDIWGALLGACRIHQNIKMGEVAAKNLFSLDPNHAGYYILLSNIYSVDENWHS 768

Query: 529 ALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           A ++R++++++++ K  G+SV+E+   ++ F++G+    +S+ +
Sbjct: 769 ATKLRRLVKEKRLNKIVGQSVVELKNEVRSFIAGDRIHDESDHI 812



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 134/503 (26%), Positives = 233/503 (46%), Gaps = 41/503 (8%)

Query: 12  KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
           +N LV LL+   +   I Q+ +Q     L+ + F +++L  ++      ++  A +LF +
Sbjct: 139 RNLLVKLLETCCSKLSISQLHSQCLKAGLVHDSFIVTKL--NVLYARYASIHHAHKLFQE 196

Query: 72  IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV-----DNYTYPFVLKACGVLM 126
                 Y+ N ++R Y       + LS +  M     +      DNY+    LK+C  L 
Sbjct: 197 TPHRTVYLWNALLRSYCFEGEWVETLSLFRQMNNVSSVSIEERPDNYSVSIALKSCAGLR 256

Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
            L+ G  IHG + K+    D+FV + LI +Y+KCG M  A  VF      D+V W  ++ 
Sbjct: 257 KLLLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIIS 316

Query: 187 GFVECGEMGKAREVFDEMPQKDAISWSIM--------------------IDGYRKKKGDI 226
           G+ + G    A   F  M   + +S   +                    + G+ K+KG  
Sbjct: 317 GYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLD 376

Query: 227 SSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
           +             L   NS++  Y K G +  A  LF EM ++++ SWS M+  YA +G
Sbjct: 377 NK------------LCLANSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNG 424

Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
              + L LF EML + ++P+ ++V+  + ACA +  L+ G  IH         M+  V T
Sbjct: 425 AETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHELAVNYGFEMETTVST 484

Query: 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK 406
           AL+DMYMKC S ++A  +F  M KK+VI++ V+ +G   NG   E++  F  M + G   
Sbjct: 485 ALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHESMWVFRNMLSSGTRP 544

Query: 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466
           D +  + +L   S  G+  +   +   + ++ G E      + L+++ ++   +E A  +
Sbjct: 545 DAIALVKILTTISELGILQQAVCLHAFVIKN-GFENNQFIGASLIEVYAKCSSIEDANKV 603

Query: 467 VESMPMKPNLALWGTLLLACRNH 489
            + M  K ++  W +++ A   H
Sbjct: 604 FKGMTYK-DVVTWSSIIAAYGFH 625



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 120/467 (25%), Positives = 228/467 (48%), Gaps = 29/467 (6%)

Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
           M+R+ LLV       +L+ C   + +   +++H + +K G + D F+V  L  +Y++   
Sbjct: 136 MERRNLLVK------LLETCCSKLSI---SQLHSQCLKAGLVHDSFIVTKLNVLYARYAS 186

Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK 222
           +  A  +F+ +  + +  WN +LR +   GE  +   +F +M    ++S     D Y   
Sbjct: 187 IHHAHKLFQETPHRTVYLWNALLRSYCFEGEWVETLSLFRQMNNVSSVSIEERPDNYSVS 246

Query: 223 KGDISSA---RILFE---HMPIK------DLISWNSMIDGYAKIGDLVAAQQLFNEMPER 270
               S A   ++L     H  +K      D+   +++ID Y K G +  A ++F E P+ 
Sbjct: 247 IALKSCAGLRKLLLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKP 306

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREM-LCQGVRPDVISVMGAISACAQVGALDLGKWI 329
           +V  W+ +I GY Q G+P+ AL  F  M + + V PD ++++   SACAQ+    LG+ +
Sbjct: 307 DVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGRSV 366

Query: 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFG 389
           H F+KR  +   + +  +L+ +Y K GS+  A  +F  M+ K++IS++ M+A    NG  
Sbjct: 367 HGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNGAE 426

Query: 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449
            + L  F +M  + I  + +  + VL AC+      EG +I + +  + G E +    + 
Sbjct: 427 TDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHE-LAVNYGFEMETTVSTA 485

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE--LKA 507
           L+D+  +    E+A+++   MP K  +A W  L     ++  V  +  V   ++    + 
Sbjct: 486 LMDMYMKCFSPEKAVDLFNRMPKKDVIA-WAVLFSGYADNGMVHESMWVFRNMLSSGTRP 544

Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET--GRSVIEI 552
           D   L  +L+ I ++ G+ + A+ +   + K   +     G S+IE+
Sbjct: 545 DAIALVKILTTI-SELGILQQAVCLHAFVIKNGFENNQFIGASLIEV 590



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 147/321 (45%), Gaps = 13/321 (4%)

Query: 59  TLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFV 118
           T ++  A  LF ++   +    +TM+  Y  +      L  +  M  K +  +  T   V
Sbjct: 392 TGSIKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSV 451

Query: 119 LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDL 178
           L+AC  +  L EG +IH   V  GF  +  V   L+ MY KC     A  +F     KD+
Sbjct: 452 LRACACISNLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDV 511

Query: 179 VSWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARILFE 234
           ++W ++  G+ + G + ++  VF  M     + DAI+  + I     + G +  A  L  
Sbjct: 512 IAWAVLFSGYADNGMVHESMWVFRNMLSSGTRPDAIAL-VKILTTISELGILQQAVCLHA 570

Query: 235 HMPIKDLISWN-----SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
            + IK+    N     S+I+ YAK   +  A ++F  M  ++V +WS +I  Y  HG  +
Sbjct: 571 FV-IKNGFENNQFIGASLIEVYAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGE 629

Query: 290 EALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTA 347
           EAL LF +M      +P+ ++ +  +SAC+  G +  G     + + + ++  +      
Sbjct: 630 EALKLFYQMANHSDTKPNNVTFISILSACSHSGLIKEGINMFDIMVNKYKLKPNSEHYAI 689

Query: 348 LIDMYMKCGSLDEARRIFYSM 368
           ++D+  + G LD A  +  +M
Sbjct: 690 MVDLLGRMGELDMALDVINNM 710


>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  310 bits (795), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 159/367 (43%), Positives = 238/367 (64%), Gaps = 3/367 (0%)

Query: 208 DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
           D  + + ++D Y  K G +S AR  F+ M ++D+ +WNSMI GYA+ GDL  A +LF  M
Sbjct: 116 DVFALTALVDMY-AKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLM 174

Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLG 326
           P RNV SW+ MI GYAQ+G   +AL +F  M  +  +RP+ +++   + ACA +GAL++G
Sbjct: 175 PARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVG 234

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGM 385
           + I V+ + +    ++ V  AL++MY +CG +D+A  +F  +  ++N+ S+N MI GL +
Sbjct: 235 ERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAV 294

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
           +G  +EA++ F +M  EG   DD+ F+GVL+AC+H G+  EG   F+SM+R   I PKLE
Sbjct: 295 HGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVEGQHFFESMERDFSIAPKLE 354

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505
           HY C+VDLL RAGEL +A +++  MPM+P+  +WGTLL AC  H +V LAE     L EL
Sbjct: 355 HYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGACSFHGHVELAEKAAGALFEL 414

Query: 506 KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIF 565
           +  + G YV+LSNIYA AG W+   R+RK+M+  KI K  G S IE  G+I +F+  +  
Sbjct: 415 EPSNPGNYVILSNIYATAGRWDGVARLRKLMKGGKITKAAGYSFIEEGGHIHKFIVEDRS 474

Query: 566 DVQSEEL 572
             +S+E+
Sbjct: 475 HSRSDEI 481



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 183/389 (47%), Gaps = 46/389 (11%)

Query: 49  QLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGL 108
           QL++SL      ++  A +LF+ I +P  +++N +I+ Y+      +  S Y  M  +G 
Sbjct: 21  QLIVSLL--QIPSIPYAHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGC 78

Query: 109 LVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARS 168
             + +++ F+  AC  L    +G  +H   VK GF CDVF +  L+ MY+K G +  AR 
Sbjct: 79  SPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARK 138

Query: 169 VFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS 228
            F+   ++D+ +WN ++ G+  CG++  A E+F  MP ++  SW+ MI GY  + G  + 
Sbjct: 139 QFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGY-AQNGQYAK 197

Query: 229 ARILF-------EHMP---------------------------------IKDLISWNSMI 248
           A  +F       E  P                                  K+L   N+++
Sbjct: 198 ALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALL 257

Query: 249 DGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
           + YA+ G +  A  +F E+   RN+ SW+ MI G A HG   EA+ LF +ML +G  PD 
Sbjct: 258 EMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDD 317

Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRS-RITMDMIVQTALIDMYMKCGSLDEARRIFY 366
           ++ +G + AC   G +  G+     M+R   I   +     ++D+  + G L EA  +  
Sbjct: 318 VTFVGVLLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLIL 377

Query: 367 SMT-KKNVISYNVMIAGLGMNGFGEEALK 394
            M  + + + +  ++     +G  E A K
Sbjct: 378 RMPMEPDSVVWGTLLGACSFHGHVELAEK 406


>gi|147810325|emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]
          Length = 805

 Score =  310 bits (795), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 172/500 (34%), Positives = 276/500 (55%), Gaps = 64/500 (12%)

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           N +M+N+MIRGY  S +P +A+  Y++M   GLL +NYT+P ++KAC  L          
Sbjct: 348 NIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTL---------- 397

Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
                              G  SK   +GC            LV  ++V  GF E     
Sbjct: 398 -------------------GSSSKL--IGC------------LVHAHVVTFGFDE----- 419

Query: 196 KAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIG 255
                       D    S +I+ Y     D+ +AR LF+ +P +D++ W +MIDGY K+G
Sbjct: 420 ------------DPFVVSALIEFYSLNF-DMGTARTLFDRIPNRDVVLWTAMIDGYGKMG 466

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
           D+  A+ LF +MPERN  SWS ++  Y++ G+ KE L LFR M   G  P+   ++  ++
Sbjct: 467 DVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLT 526

Query: 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS 375
           ACA +GAL  G W+H + K+     + I+ TAL+DMY KCG ++ A   F  +  K+  +
Sbjct: 527 ACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPNKDAGA 586

Query: 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMK 435
           +N MI+G+ MNG   ++L+ F +M + G    +  F+ VL AC+H+ L  EG ++F+ M 
Sbjct: 587 WNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTHARLVREGLKLFEQMS 646

Query: 436 RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP---MKPNLALWGTLLLACRNHQNV 492
            + G+EP+ EHY+CLVDL++RAG L +A   +E       + +  +WG  L ACR + N+
Sbjct: 647 SNYGVEPQXEHYACLVDLMARAGMLAEAEKFIEEKMGGLGRGDANVWGAXLGACRTYGNI 706

Query: 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
            +   V + L ++   DCG +VL  N+Y +AG    A R+R+++ +  +KK+ G S+IE+
Sbjct: 707 EVGNRVWKKLADMGVADCGTHVLSYNLYREAGWDMEAKRVRRLISEXGMKKKPGCSIIEV 766

Query: 553 DGNIKEFVSGEIFDVQSEEL 572
           DG ++EF++G++   Q+ ++
Sbjct: 767 DGTVEEFLAGDLSHSQAPQI 786



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 112/247 (45%), Gaps = 35/247 (14%)

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD--LGK 327
           RN+F ++ MI GY    +P  A+  + +ML  G+  +  +    I AC  +G+    +G 
Sbjct: 347 RNIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSSKLIGC 406

Query: 328 WIHVF-------------------------MKRSRI------TMDMIVQTALIDMYMKCG 356
            +H                           M  +R         D+++ TA+ID Y K G
Sbjct: 407 LVHAHVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMIDGYGKMG 466

Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
            ++ AR +F  M ++N IS++ ++A     G  +E L  F +M+  G   ++ + + VL 
Sbjct: 467 DVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLT 526

Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
           AC+H G   +G  +  S  + C  +      + LVD+ S+ G +E AL+  + +P K + 
Sbjct: 527 ACAHLGALAQGLWV-HSYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPNK-DA 584

Query: 477 ALWGTLL 483
             W  ++
Sbjct: 585 GAWNAMI 591



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 71/144 (49%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           +++ A  LF  + + N    + ++  Y++  + ++ L  +  M+  G + +      VL 
Sbjct: 467 DVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLT 526

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L +G  +H    +  F  +  +   L+ MYSKCG +  A S F+G   KD  +
Sbjct: 527 ACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPNKDAGA 586

Query: 181 WNLVLRGFVECGEMGKAREVFDEM 204
           WN ++ G    G+  K+ E+F++M
Sbjct: 587 WNAMISGVAMNGDAWKSLELFNKM 610


>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Cucumis sativus]
          Length = 532

 Score =  310 bits (795), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 188/560 (33%), Positives = 278/560 (49%), Gaps = 68/560 (12%)

Query: 30  QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
           Q  AQ+  + L    F LS+LL         ++  A +LF  I  P   + NTMI+    
Sbjct: 23  QAHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTICIFNTMIKALLL 82

Query: 90  SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
                 A++ +  + R G+  D YT P+VLKA   +  +  G  IH   +K+        
Sbjct: 83  RGEFLNAIAVFSAIFRNGIHPDTYTLPYVLKASARMTNIHLGESIHACTIKL-------- 134

Query: 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDA 209
                                 GS + + V  N +L  +     M  AR+VFDE      
Sbjct: 135 ----------------------GSAVNEFVG-NSLLVMYRSFDNMRSARQVFDE------ 165

Query: 210 ISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269
                                     MP    +SW  MI GYA +GD+  A++LF+    
Sbjct: 166 --------------------------MPELSAVSWTVMIYGYANMGDVDTARELFDMATV 199

Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329
           ++   W  MI GY Q+   KE L++FR M    V PD   ++  +SACA +GALD G WI
Sbjct: 200 KDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWI 259

Query: 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFG 389
           H ++ R  + + + V T LIDMY KCG LD A+ +F  M++++ + +N MI+G+ M+G G
Sbjct: 260 HRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDG 319

Query: 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449
           E A+K F +ME  GI  D++ F+ VL ACS+SG+  EG RI+  M     IEPK EHY C
Sbjct: 320 EGAIKLFMEMEKAGIKPDNITFIAVLAACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGC 379

Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLA----LWGTLLLACRNHQNVTLAEVVVEGLVEL 505
           ++DLLSR G  E+A  +++ +P   + +     W   L AC  H     AEV  E L +L
Sbjct: 380 VIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERLFQL 439

Query: 506 KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIF 565
           +    G YVLLSN+YA  G  E A R+R MM+ + ++K  G S I+++G + EF++GE  
Sbjct: 440 ERHS-GAYVLLSNMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSIKVNGVVNEFIAGEKT 498

Query: 566 DVQSEELELVIQSFVKTTIE 585
               + + LV++   K  +E
Sbjct: 499 HRHIDNIHLVLEELNKQIVE 518


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  310 bits (795), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 174/500 (34%), Positives = 288/500 (57%), Gaps = 9/500 (1%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDN-YTYPFVLK 120
           ++ + R+F++I   N     +MI GY Q+   ++ L  + N  R+GL+  N YT   ++ 
Sbjct: 188 VEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLF-NRMREGLVEGNQYTLGSLVT 246

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L  L +G  +HG V+K GF  + F+V  L+ +Y KCG +  A SVF+     DLVS
Sbjct: 247 ACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVS 306

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK---KKGDISSAR---ILFE 234
           W  ++ G+ + G   +A ++F +   KD +  ++          + G ++  R    L  
Sbjct: 307 WTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGI 366

Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
            +  +D    N+++D YAK   +  A+ +F  + +++V +W+ +I GY Q+G   EAL L
Sbjct: 367 KLGSEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALEL 426

Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF-MKRSRITMDMIVQTALIDMYM 353
           F +M    V PD I+++  +SACA VGA  +G  +H + +K   ++  + V TAL++ Y 
Sbjct: 427 FDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYA 486

Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
           KCG  + AR IF  M +KN I+++ MI G G+ G    +L+ F  M  E +  +++IF  
Sbjct: 487 KCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTT 546

Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           +L ACSHSG+  EG+R F +M +     P ++HY+C+VDLL+RAG LE+AL+ +E +P++
Sbjct: 547 ILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACMVDLLARAGRLEEALDFIEKIPIQ 606

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
           P+++L G  L  CR H    L EV V  ++EL  D    YVL+SN+YA  G W  A ++ 
Sbjct: 607 PDVSLLGAFLHGCRLHSRFDLGEVAVRRMLELHPDKACYYVLMSNLYASEGRWSQANQVM 666

Query: 534 KMMRKRKIKKETGRSVIEID 553
           ++M++R + K  G S+++I+
Sbjct: 667 ELMKQRGLAKLPGWSLVDIE 686



 Score =  208 bits (529), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 150/502 (29%), Positives = 258/502 (51%), Gaps = 37/502 (7%)

Query: 2   KTLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLN 61
           +T+A+ +    NP  SLL I KT + + +I A L  + L +E       L+SL      +
Sbjct: 29  RTIASIQSISSNPCFSLLGICKTVSSLRKIHALLVVHGL-SEDLLCETKLVSLYGSFG-H 86

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGL-LVDNYTYPFVLK 120
           ++ A  +F++I  P+ Y    MIR Y  + +  + + FY    RK L   DN  +  VLK
Sbjct: 87  VECARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLK 146

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
           AC  L    EG ++H ++VK+G   D FV+ GL+ MY+KC  +  +R VF+    +++V 
Sbjct: 147 ACSELRETDEGRKLHCQIVKVGSP-DSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVC 205

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMP--- 237
           W  ++ G+V+   + +   +F+ M +        +++G +   G + +A      +    
Sbjct: 206 WTSMIVGYVQNDCLKEGLVLFNRMREG-------LVEGNQYTLGSLVTACTKLGALHQGK 258

Query: 238 ------IKDLISWNS-----MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
                 IK     NS     ++D Y K GD+  A  +F+E+   ++ SW+ MI GYAQ G
Sbjct: 259 WVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRG 318

Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
            P+EAL LF +   + + P+ ++    +SACAQ G+L++G+ +H    +   + D   + 
Sbjct: 319 YPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLG-SEDATFEN 377

Query: 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK 406
           AL+DMY KC  + +AR +F ++  K+VI++N +I+G   NG+  EAL+ F QM ++ +  
Sbjct: 378 ALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYP 437

Query: 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS-----CLVDLLSRAGELE 461
           D +  + VL AC+  G     YR+  S+  +  I+  L   S      L++  ++ G+ E
Sbjct: 438 DAITLVSVLSACASVG----AYRVGSSLHGY-AIKAGLLSGSVYVGTALLNFYAKCGDAE 492

Query: 462 QALNIVESMPMKPNLALWGTLL 483
            A  I + M  K N   W  ++
Sbjct: 493 SARVIFDEMGEK-NTITWSAMI 513


>gi|125539857|gb|EAY86252.1| hypothetical protein OsI_07623 [Oryza sativa Indica Group]
          Length = 629

 Score =  310 bits (795), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 144/339 (42%), Positives = 229/339 (67%), Gaps = 4/339 (1%)

Query: 228 SARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN 287
           + R+L+      D++SWN+M+ GY K GDL AA+++F  MPERN+ SWS M+D   + G 
Sbjct: 132 ARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGE 191

Query: 288 PKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI---TMDMIV 344
             EAL++F  M+ +  RPDV+ ++  + ACA +GA++ G+W+H +++         ++++
Sbjct: 192 FGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLML 251

Query: 345 QTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGI 404
           +TAL+DMY KCG +++A ++F  + +++V+ +N MI GL MNG+GE AL+ F +M  +G 
Sbjct: 252 ETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGF 311

Query: 405 PKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL 464
             ++  F+ VL AC+H+G   EG R+F+SM+ + GI+P+ EHY CL DLL RAG +E+A 
Sbjct: 312 MPNESTFIAVLCACTHTGRVDEGKRVFKSMQDY-GIKPQREHYGCLADLLGRAGNVEEAE 370

Query: 465 NIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524
            ++  MPM+P+ + WG L+ +C+ H ++ + E V + L+EL+  D G YV+L N+YA  G
Sbjct: 371 ALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNG 430

Query: 525 MWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
            WE A  IR+MM  R  KKETG S IE++G + EF+SG+
Sbjct: 431 RWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGD 469



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 125/272 (45%), Gaps = 44/272 (16%)

Query: 140 KMGFLCDVFVVNGLIGMYSKCGHMGCARSV-FEGSEIKDLVSWNLVLRGFVECGEMGKAR 198
           K G L    V N L+ +Y   G +  AR V + G    D+VSWN ++ G+ + G++G AR
Sbjct: 106 KCGALAHPVVTNSLLKLYCSLGLIDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAR 165

Query: 199 EVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKD-------LIS-------- 243
           EVF  MP+++ +SWS M+D    + G+   A  +F+ M  ++       L+S        
Sbjct: 166 EVFARMPERNLVSWSAMVDAC-VRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHL 224

Query: 244 -------W--------------------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
                  W                     +++D Y K G +  A Q+F+ +  R+V  W+
Sbjct: 225 GAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWN 284

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS 336
            MI G A +G  + AL LFR ML +G  P+  + +  + AC   G +D GK +   M+  
Sbjct: 285 AMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDY 344

Query: 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
            I         L D+  + G+++EA  +   M
Sbjct: 345 GIKPQREHYGCLADLLGRAGNVEEAEALLLDM 376



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 102/240 (42%), Gaps = 15/240 (6%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  A  +F ++ + N    + M+    ++    +AL  +  M R+    D      VLK
Sbjct: 160 DLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLK 219

Query: 121 ACGVLMGLVEGTEIHGEVVKMGF---LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
           AC  L  +  G  +H  +    F     ++ +   L+ MY KCG M  A  VF+G   +D
Sbjct: 220 ACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRD 279

Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQKDAI---SWSIMIDGYRKKKGDISSARILFE 234
           +V WN ++ G    G   +A E+F  M QK  +   S  I +       G +   + +F+
Sbjct: 280 VVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFK 339

Query: 235 HM------PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
            M      P ++   +  + D   + G++  A+ L  +MP E +   W  ++     H +
Sbjct: 340 SMQDYGIKPQRE--HYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHND 397


>gi|297737195|emb|CBI26396.3| unnamed protein product [Vitis vinifera]
          Length = 667

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 175/505 (34%), Positives = 292/505 (57%), Gaps = 22/505 (4%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A  +F+Q+   +    N++I  + +  +  ++      M+  GL + + T+   L +C  
Sbjct: 82  ARLVFDQMPIKSLVSWNSIISAHCRDFHIDQSFGILKQMQLLGLELSSATFTGFLASCS- 140

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
              L +G  IHG + K+G    + + N ++ MY +   +  A SVF     K +VSW ++
Sbjct: 141 ---LPQGLSIHGYITKLGLDLHLPLANSIMSMYIRLNQIDGALSVFYTLHQKSIVSWTII 197

Query: 185 LRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARIL-------- 232
           L G++  G++ K   VF++M  +    D+I +  +I    K  G++  A ++        
Sbjct: 198 LGGYLSAGDVAKVFAVFNQMRCQCVGPDSIVFVNLISCC-KLSGNLLLAMLVHSLLLKSG 256

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
           F+H   KD I  N ++  YAK  DLV+A+++F+ + E++VF W+ MI GYAQ G P EAL
Sbjct: 257 FDH---KDPID-NLLVAMYAKCKDLVSARRVFDAVHEKSVFLWTSMISGYAQFGYPNEAL 312

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
           +LF  +L    RP+ +++   +SACA++G+L +G+ I  ++  + +  D+ VQT+LI M+
Sbjct: 313 HLFNMLLRTASRPNELTLATVLSACAEMGSLRMGEEIEQYILLNGLGSDLRVQTSLIHMF 372

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE-GIPKDDLIF 411
            KCGS+ +A+ +F  +  K++  ++ MI G  ++G G+EAL  F +M+ E GI  D +++
Sbjct: 373 CKCGSIKKAQALFERIPNKDLAVWSAMINGYAVHGMGKEALNLFHKMQNEVGIKPDAIVY 432

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
             VL+ACSHSGL  +G + F+SM++  GIEP ++HYSCLVDLL RAG +E AL  ++ MP
Sbjct: 433 TSVLLACSHSGLIEDGLKYFRSMQKDFGIEPSIQHYSCLVDLLGRAGYVELALRTIQEMP 492

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           +     +W   L AC  H N+ L E   + L +L+    G +VL++N+Y   G W+ A +
Sbjct: 493 VLVQARVWAPFLSACYTHHNLELGEFAAKNLFDLEPRSTGNFVLMTNLYTSMGKWKEAAK 552

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNI 556
            R ++  R + KE G S IEIDG +
Sbjct: 553 ARSIINARGLVKEPGWSQIEIDGAV 577



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 185/393 (47%), Gaps = 29/393 (7%)

Query: 106 KGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGC 165
            G+    +T+PFVLKAC  L  L + T++H  ++  GF   VFV   L+ +YSKC     
Sbjct: 22  SGVHGSEFTFPFVLKACAKLPSLEDATKLHSHILLTGFQAHVFVQTALVDVYSKCCCFHS 81

Query: 166 ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP---------------QKDAI 210
           AR VF+   IK LVSWN ++        + ++  +  +M                   ++
Sbjct: 82  ARLVFDQMPIKSLVSWNSIISAHCRDFHIDQSFGILKQMQLLGLELSSATFTGFLASCSL 141

Query: 211 SWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER 270
              + I GY  K G       L  H+P+      NS++  Y ++  +  A  +F  + ++
Sbjct: 142 PQGLSIHGYITKLG-------LDLHLPLA-----NSIMSMYIRLNQIDGALSVFYTLHQK 189

Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
           ++ SW+I++ GY   G+  +   +F +M CQ V PD I  +  IS C   G L L   +H
Sbjct: 190 SIVSWTIILGGYLSAGDVAKVFAVFNQMRCQCVGPDSIVFVNLISCCKLSGNLLLAMLVH 249

Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
             + +S       +   L+ MY KC  L  ARR+F ++ +K+V  +  MI+G    G+  
Sbjct: 250 SLLLKSGFDHKDPIDNLLVAMYAKCKDLVSARRVFDAVHEKSVFLWTSMISGYAQFGYPN 309

Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
           EAL  F  +       ++L    VL AC+  G    G  I Q +  + G+   L   + L
Sbjct: 310 EALHLFNMLLRTASRPNELTLATVLSACAEMGSLRMGEEIEQYILLN-GLGSDLRVQTSL 368

Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
           + +  + G +++A  + E +P K +LA+W  ++
Sbjct: 369 IHMFCKCGSIKKAQALFERIPNK-DLAVWSAMI 400



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 147/318 (46%), Gaps = 11/318 (3%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
            +D A  +F  ++Q +      ++ GY  + +  K  + +  M+ + +  D+  +  ++ 
Sbjct: 175 QIDGALSVFYTLHQKSIVSWTIILGGYLSAGDVAKVFAVFNQMRCQCVGPDSIVFVNLIS 234

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C +   L+    +H  ++K GF     + N L+ MY+KC  +  AR VF+    K +  
Sbjct: 235 CCKLSGNLLLAMLVHSLLLKSGFDHKDPIDNLLVAMYAKCKDLVSARRVFDAVHEKSVFL 294

Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR--------IL 232
           W  ++ G+ + G   +A  +F+ + +  +    + +        ++ S R        IL
Sbjct: 295 WTSMISGYAQFGYPNEALHLFNMLLRTASRPNELTLATVLSACAEMGSLRMGEEIEQYIL 354

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
              +   DL    S+I  + K G +  AQ LF  +P +++  WS MI+GYA HG  KEAL
Sbjct: 355 LNGLG-SDLRVQTSLIHMFCKCGSIKKAQALFERIPNKDLAVWSAMINGYAVHGMGKEAL 413

Query: 293 YLFREMLCQ-GVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALID 350
            LF +M  + G++PD I     + AC+  G ++ G K+     K   I   +   + L+D
Sbjct: 414 NLFHKMQNEVGIKPDAIVYTSVLLACSHSGLIEDGLKYFRSMQKDFGIEPSIQHYSCLVD 473

Query: 351 MYMKCGSLDEARRIFYSM 368
           +  + G ++ A R    M
Sbjct: 474 LLGRAGYVELALRTIQEM 491


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 194/577 (33%), Positives = 312/577 (54%), Gaps = 22/577 (3%)

Query: 23  KTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYM--H 80
           K+  H  QI +QL T +       ++ LL+      +++      LFN    P+T +   
Sbjct: 111 KSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIH--HTLLLFNTYPHPSTNVVTW 168

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
            T+I   ++S+ P +AL+F+  M+  G+  +++T+  +L AC     L EG +IH  + K
Sbjct: 169 TTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHK 228

Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
             FL D FV   L+ MY+KCG M  A +VF+    ++LVSWN ++ GFV+    G+A  V
Sbjct: 229 HCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGV 288

Query: 201 FDEM----PQKDAISWS-------IMIDGYRKKKGDISSARILFEHMPIKDLISWNSMID 249
           F E+    P + +IS         + +D  ++  G I   R L   + +K     NS++D
Sbjct: 289 FREVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVK-RGLVGLVYVK-----NSLVD 342

Query: 250 GYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS 309
            Y K G    A +LF    +R+V +W++MI G  +  N ++A   F+ M+ +GV PD  S
Sbjct: 343 MYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEAS 402

Query: 310 VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369
                 A A + AL  G  IH  + ++    +  + ++L+ MY KCGS+ +A ++F    
Sbjct: 403 YSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETK 462

Query: 370 KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR 429
           + NV+ +  MI     +G   EA+K F +M  EG+  + + F+ VL ACSH+G   +G++
Sbjct: 463 EHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFK 522

Query: 430 IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
            F SM     I+P LEHY+C+VDLL R G LE+A   +ESMP +P+  +WG LL AC  H
Sbjct: 523 YFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKH 582

Query: 490 QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSV 549
            NV +   V E L +L+ D+ G Y+LLSNIY   GM E A  +R++M    ++KE+G S 
Sbjct: 583 ANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSW 642

Query: 550 IEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586
           I++      F + +    +++E+  ++Q  +K  I+R
Sbjct: 643 IDVKNRTFVFNANDRSHSRTQEIYGMLQK-LKELIKR 678


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 193/660 (29%), Positives = 323/660 (48%), Gaps = 113/660 (17%)

Query: 15  LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
           LV+L         + Q    L  N L +  + +S LL++ T  +  +    + +F     
Sbjct: 4   LVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHA-HPAYVDSIFTSSPS 62

Query: 75  PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
           P+  +++ M++ Y++     + +S +       L    + Y +++K  G       G   
Sbjct: 63  PDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGK-----SGNMF 117

Query: 135 HGEVVKMGF---------LCDVFVVNGLIGM----------------------------- 156
           H  V+K+G          + D++  NG + +                             
Sbjct: 118 HAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNE 177

Query: 157 ------------------------YSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
                                   Y+K G +  AR  F+    + +VSWN +   + +  
Sbjct: 178 TEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKE 237

Query: 193 EMGKAREVFDEMPQK----DAISWSI-------------------MID------------ 217
              +A  +F +M ++    D  +W +                   MID            
Sbjct: 238 CPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKT 297

Query: 218 ---GYRKKKGDISSARILFEHM-PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
                  K G++  AR +F+ +   ++ ++WN MI  Y ++G L  A++LF+ MP+R+V 
Sbjct: 298 ALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVV 357

Query: 274 SWSIMIDGYAQHGNPKEALYLFREML-CQGVRPDVISVMGAISACAQVGALDLGKWIHVF 332
           SW+ MI GYAQ+G    ++ LF+EM+ C  ++PD +++   +SAC  +GAL L  W+   
Sbjct: 358 SWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDI 417

Query: 333 MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
           ++   I + +    +LI MY KCGS+ +A RIF +M  ++V+S+N +I+G   NG G+EA
Sbjct: 418 VREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEA 477

Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
           +K    ME EGI  D + ++GVL ACSH+GL  EG  +F+S++      P ++HY+C+VD
Sbjct: 478 IKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMVD 532

Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
           LL RAGEL++A  +++SMPMKP+  ++G+LL A R H+ V L E+    L EL+  + G 
Sbjct: 533 LLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGN 592

Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           YVLLSNIYA  G WE   R+R+MM+K  +KK  G S +E  G + +F  G+    QS+++
Sbjct: 593 YVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDI 652


>gi|255559020|ref|XP_002520533.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540375|gb|EEF41946.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 547

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 176/529 (33%), Positives = 290/529 (54%), Gaps = 44/529 (8%)

Query: 33  AQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSN 92
           A+L  + L +     S+L+   T    L++    +LF++I +PN Y    +I  Y++   
Sbjct: 53  ARLIVSGLASSNNFASKLISFYTETRQLSI--VRKLFDRIPKPNFYQRTVLIGAYSRHGF 110

Query: 93  PQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNG 152
            Q  L  +  M+ + L  + +  P VL+ACG +  L  G  +H  +++  F  DV V   
Sbjct: 111 YQDVLDVFSEMQNERLRPNKFVIPSVLRACGHVFDLQTGKILHSVILRHLFESDVVVNTA 170

Query: 153 LIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISW 212
           LI MYS+C H+                                KAR+VFD M +KD ++ 
Sbjct: 171 LIDMYSRCRHVE-------------------------------KARKVFDGMQEKDLVAL 199

Query: 213 SIMIDGYRKKKGDISSARILFEHMPIKD----LISWNSMIDGYAKIGDLVAAQQLFNEMP 268
           + M+ GY  + G      +L E M + D    L++WN++I G+A+ GD V  Q+LF  M 
Sbjct: 200 NAMVLGY-AQNGFAKEGFLLVEQMQMLDIKPNLVTWNTLISGFAQAGDKVMVQELFGLMS 258

Query: 269 ----ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
               E +V SW+ +I  + Q+ + + A   F++ML  G  P+  ++   + ACA +  + 
Sbjct: 259 MHGFEPDVISWTSVISRFVQNSHNEAAFAAFKQMLQHGAYPNSATISSLLPACASLANVR 318

Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
            G+ +H +     +  D+ V++A++DMY KCG + EAR +F  M +++ +++N MI G  
Sbjct: 319 HGRELHGYAFAIGVEEDIYVRSAIVDMYSKCGLISEARMLFSKMPERHTVTWNSMIFGYA 378

Query: 385 MNGFGEEALKCFAQME-TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443
            +G+ +EA++ F QME TE    D L F  VL ACSH  L   G  +F  M     I P+
Sbjct: 379 NHGYCDEAIELFNQMEKTEAKKIDHLSFTAVLTACSHGRLVELGQSLFLLMHEKYKIVPR 438

Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLV 503
           LEHY+C++DLL RAG+L +A +++++MP++P+L +WG LL ACR H  + LAE+    L 
Sbjct: 439 LEHYACMIDLLGRAGKLSEAYDMIKTMPVEPDLFVWGALLGACRQHGEIDLAEIAARHLA 498

Query: 504 ELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
           EL+  + G  +LLSN+YADAG WE+  ++ KM ++++++K +  S I++
Sbjct: 499 ELEPRNAGNNMLLSNLYADAGSWENVAKL-KMGKRKRLRKFSAYSWIQL 546



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 1/167 (0%)

Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
           AL+ GK +H  +  S +       + LI  Y +   L   R++F  + K N     V+I 
Sbjct: 44  ALNQGKHLHARLIVSGLASSNNFASKLISFYTETRQLSIVRKLFDRIPKPNFYQRTVLIG 103

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
               +GF ++ L  F++M+ E +  +  +   VL AC H      G  +   + RH   E
Sbjct: 104 AYSRHGFYQDVLDVFSEMQNERLRPNKFVIPSVLRACGHVFDLQTGKILHSVILRHL-FE 162

Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
             +   + L+D+ SR   +E+A  + + M  K  +AL   +L   +N
Sbjct: 163 SDVVVNTALIDMYSRCRHVEKARKVFDGMQEKDLVALNAMVLGYAQN 209


>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09190-like [Cucumis sativus]
 gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09190-like [Cucumis sativus]
          Length = 484

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 178/540 (32%), Positives = 285/540 (52%), Gaps = 66/540 (12%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           ++  ++ LL   K+ TH+ QI A    + L      L+  +    S N +    A+RLF+
Sbjct: 8   IERRILRLLHGHKSRTHLTQIHAHFLRHGLHQSNQILAHFISVCASFNRIAY--ADRLFS 65

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
           Q + PN ++ N++I+ ++ S    ++L  + +MK   ++ D YT+  +LK+C  L     
Sbjct: 66  QSHNPNIFLFNSIIKAHSLSVPFHQSLLLFSSMKNHRIVPDQYTFAPLLKSCANLCEYSL 125

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
           G  +  EV + GF C   +  G++ +Y                               V 
Sbjct: 126 GQCVISEVFRRGFYCFGSIRIGVVELY-------------------------------VC 154

Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDG 250
           C +M  A ++FDEM  +D                                ++ WN MI G
Sbjct: 155 CEKMEDAWKMFDEMSHRD--------------------------------VVVWNLMIRG 182

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           + K G++     LF +M ER++ SW+ +I   AQ+    EAL LF++M   G +PD ++V
Sbjct: 183 FCKTGNVDFGLCLFRQMSERSLVSWNTIISCLAQNRRDVEALELFQQMEEHGFKPDEVTV 242

Query: 311 MGAISACAQVGALDLGKWIHVFMK-RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369
           +  +  C+++GAL++G+ IH +   +  +     V  +LID Y KCG++++A  IF  MT
Sbjct: 243 VTMLPVCSRLGALEVGQRIHSYASSKGNLVGITTVGNSLIDFYCKCGNIEKAYNIFQKMT 302

Query: 370 KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR 429
            K+V+S+N +I G  +NG GE A+  F +M  E +  +D  F+ VL AC HSGL  +G  
Sbjct: 303 CKSVVSWNTIILGFALNGKGEFAIDLFMEMRKEYLKPNDATFVAVLTACVHSGLLEKGRE 362

Query: 430 IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
           +F SM     I+PKLEH+ C+VDLL R G +E+A  +++SMPM+PN  LWG +L ACR H
Sbjct: 363 LFSSMAEDYEIQPKLEHFGCMVDLLGRGGCVEEAHKLIKSMPMQPNATLWGAVLGACRTH 422

Query: 490 QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSV 549
            N+ LAE+ V+ L+ L+  + G YVLLSN+ A+ G WE    +R+ MR++ +KK  G+S 
Sbjct: 423 GNLKLAEMAVKELISLEPWNSGNYVLLSNMLAEEGRWEEVENVRQWMREKSVKKAPGQSA 482


>gi|413924390|gb|AFW64322.1| hypothetical protein ZEAMMB73_176484 [Zea mays]
          Length = 496

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 142/332 (42%), Positives = 217/332 (65%)

Query: 232 LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
           LF+ MP++ ++++N+MI G  + G + AA ++F+ MP  +  SW+ +IDG+ ++G   EA
Sbjct: 129 LFDSMPVRSVVTYNTMISGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEA 188

Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           +  FR ML  GV  D I+++  +SACA+VGAL LG W+H  + R R+  ++ V  +LIDM
Sbjct: 189 IDCFRAMLLDGVETDYITLVAVVSACAEVGALGLGMWVHRLVLRQRLERNVRVANSLIDM 248

Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
           Y +CG ++ A ++F S+ K+ V+S+N MI G   NG   +A++ F +M  +G   D +  
Sbjct: 249 YARCGQVNLAAQVFRSIRKRTVVSWNSMIVGFAANGRCTDAIELFEEMRRQGFKPDAVTL 308

Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
            GVL ACSH+GL   G R +  M    G+  ++EHY C+VDLL RAG L++A+++VE+MP
Sbjct: 309 TGVLTACSHAGLTEHGLRYYDLMTTEYGVAARMEHYGCVVDLLGRAGRLDEAMHVVETMP 368

Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
           M+PN  + G LL  CR H N+ +AE +++ L EL       YVLLSNIYA  G W+ A +
Sbjct: 369 MRPNEVVLGALLAGCRTHGNLDMAEQMMQHLFELDPQGDANYVLLSNIYAAVGKWDGAGK 428

Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           +R +M+ R +KK  G S +EIDG++ EFVSG+
Sbjct: 429 VRSLMKARGVKKRPGHSTVEIDGDVHEFVSGD 460



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 146/316 (46%), Gaps = 50/316 (15%)

Query: 134 IHGEVVKMGFLCDVFVVNGLIGMY--SKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
           +H   +K+ F   + +   L   Y  S+  H+  A  +F+   ++ +V++N ++ G +  
Sbjct: 95  LHARALKL-FPSHLLLSTCLARFYLASRLPHL--ALQLFDSMPVRSVVTYNTMISGLMRN 151

Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK----DLIS---- 243
           G +  A EVFD MP  D +SW+ +IDG+  K G    A   F  M +     D I+    
Sbjct: 152 GLVDAAFEVFDGMPGPDKVSWTALIDGF-VKNGRHDEAIDCFRAMLLDGVETDYITLVAV 210

Query: 244 --------------W-----------------NSMIDGYAKIGDLVAAQQLFNEMPERNV 272
                         W                 NS+ID YA+ G +  A Q+F  + +R V
Sbjct: 211 VSACAEVGALGLGMWVHRLVLRQRLERNVRVANSLIDMYARCGQVNLAAQVFRSIRKRTV 270

Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWIHV 331
            SW+ MI G+A +G   +A+ LF EM  QG +PD +++ G ++AC+  G  + G ++  +
Sbjct: 271 VSWNSMIVGFAANGRCTDAIELFEEMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYYDL 330

Query: 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG--- 387
                 +   M     ++D+  + G LDEA  +  +M  + N +    ++AG   +G   
Sbjct: 331 MTTEYGVAARMEHYGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVLGALLAGCRTHGNLD 390

Query: 388 FGEEALKCFAQMETEG 403
             E+ ++   +++ +G
Sbjct: 391 MAEQMMQHLFELDPQG 406



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 103/238 (43%), Gaps = 15/238 (6%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D A  +F+ +  P+      +I G+ ++    +A+  +  M   G+  D  T   V+ A
Sbjct: 154 VDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDGVETDYITLVAVVSA 213

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  +  L  G  +H  V++     +V V N LI MY++CG +  A  VF     + +VSW
Sbjct: 214 CAEVGALGLGMWVHRLVLRQRLERNVRVANSLIDMYARCGQVNLAAQVFRSIRKRTVVSW 273

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
           N ++ GF   G    A E+F+EM ++     ++ + G        S A +    +   DL
Sbjct: 274 NSMIVGFAANGRCTDAIELFEEMRRQGFKPDAVTLTGVLTA---CSHAGLTEHGLRYYDL 330

Query: 242 IS-----------WNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQHGN 287
           ++           +  ++D   + G L  A  +   MP R N      ++ G   HGN
Sbjct: 331 MTTEYGVAARMEHYGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVLGALLAGCRTHGN 388



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 135/318 (42%), Gaps = 52/318 (16%)

Query: 264 FNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR------PDVISVMGAI 314
           F   P    R+V SW+  I   A+ G+    L+     LC  V       P+ ++++  +
Sbjct: 21  FQRAPRHAPRDVVSWTSTISRAARQGD----LHAAAASLCAMVSSPAAPAPNDVTLLTVL 76

Query: 315 SACAQVGALDLGKWIHVFMKRSRITM---DMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
           SACA   +  L   + + +    + +    +++ T L   Y+       A ++F SM  +
Sbjct: 77  SACADSPSSPLASPLALTLHARALKLFPSHLLLSTCLARFYLASRLPHLALQLFDSMPVR 136

Query: 372 NVISYNVMIAGL--------------GM-----------------NGFGEEALKCFAQME 400
           +V++YN MI+GL              GM                 NG  +EA+ CF  M 
Sbjct: 137 SVVTYNTMISGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAML 196

Query: 401 TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460
            +G+  D +  + V+ AC+  G    G  + + + R   +E  +   + L+D+ +R G++
Sbjct: 197 LDGVETDYITLVAVVSACAEVGALGLGMWVHRLVLRQ-RLERNVRVANSLIDMYARCGQV 255

Query: 461 EQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLSN 518
             A  +  S+  K  +  W ++++    +   T A  + E +     K D   L  +L+ 
Sbjct: 256 NLAAQVFRSI-RKRTVVSWNSMIVGFAANGRCTDAIELFEEMRRQGFKPDAVTLTGVLTA 314

Query: 519 IYADAGMWEHALRIRKMM 536
             + AG+ EH LR   +M
Sbjct: 315 C-SHAGLTEHGLRYYDLM 331


>gi|326496937|dbj|BAJ98495.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 491

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 158/443 (35%), Positives = 250/443 (56%), Gaps = 31/443 (6%)

Query: 111 DNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF 170
           D+ +  F L +C     L   + +H   V++G   DV+V++  +  Y +   +  A  +F
Sbjct: 71  DHLSLSFSLHSCTRSPSLPVASLLHSFAVRLGHARDVYVLSAAVSAYFRATDVASAERLF 130

Query: 171 EGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR 230
             S  KD+                             D ++W+ M+ G+    GD+  AR
Sbjct: 131 --SYTKDVA----------------------------DVVTWTTMVTGH-ANTGDLERAR 159

Query: 231 ILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKE 290
             F+ MP ++++SWN+M+  YA  G L  A++LF+ MP RN  SWS M+ G  +    +E
Sbjct: 160 WFFDAMPERNVVSWNAMLGAYASAGMLSKARKLFDIMPSRNAASWSSMVTGLVRSNRCEE 219

Query: 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
           AL +F EM+  GV P+  +++ A+SAC+ + +L+ G W+H + KR    M +++ TA++D
Sbjct: 220 ALRVFSEMIGMGVVPNESALVSAVSACSLLRSLEHGVWVHAYAKRELQGMSLVLATAIVD 279

Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
           MY KCG +  A R+F +M  KN+ S+N MI GL MNG   +AL  F +M+  G+  +D+ 
Sbjct: 280 MYGKCGGIHNAVRVFAAMPVKNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVRPNDIT 339

Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
           F+G+L ACSHSGL  EG  +F  M    GI+P  EHY  +VDLL RAG + +A++ V SM
Sbjct: 340 FIGLLGACSHSGLVDEGRWLFNMMVNGFGIQPVQEHYGLMVDLLGRAGHVREAVDFVNSM 399

Query: 471 PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530
           P++P+  LWG L  AC+ H  V L E + + L+EL+      Y+LLSNIY  +  W+   
Sbjct: 400 PVEPHPGLWGALAGACKIHGEVELGEEIAKKLIELEPRHGSRYILLSNIYGASNRWDDMA 459

Query: 531 RIRKMMRKRKIKKETGRSVIEID 553
            +R++++ RK+ K TG +++  D
Sbjct: 460 TVRRLLKDRKVPKGTGNAMVGND 482



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 102/237 (43%), Gaps = 15/237 (6%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           + +A +LF+ +   N    ++M+ G  +S+  ++AL  +  M   G++ +       + A
Sbjct: 186 LSKARKLFDIMPSRNAASWSSMVTGLVRSNRCEEALRVFSEMIGMGVVPNESALVSAVSA 245

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C +L  L  G  +H    +      + +   ++ MY KCG +  A  VF    +K++ SW
Sbjct: 246 CSLLRSLEHGVWVHAYAKRELQGMSLVLATAIVDMYGKCGGIHNAVRVFAAMPVKNIYSW 305

Query: 182 NLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHM- 236
           N ++ G    G   +A  +F +M     + + I++ I + G     G +   R LF  M 
Sbjct: 306 NSMITGLAMNGREMQALSLFWKMQMAGVRPNDITF-IGLLGACSHSGLVDEGRWLFNMMV 364

Query: 237 ------PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHG 286
                 P+++   +  M+D   + G +  A    N MP E +   W  +      HG
Sbjct: 365 NGFGIQPVQE--HYGLMVDLLGRAGHVREAVDFVNSMPVEPHPGLWGALAGACKIHG 419



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 78/171 (45%), Gaps = 12/171 (7%)

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
            + PD +S+  ++ +C +  +L +   +H F  R     D+ V +A +  Y +   +  A
Sbjct: 67  RLPPDHLSLSFSLHSCTRSPSLPVASLLHSFAVRLGHARDVYVLSAAVSAYFRATDVASA 126

Query: 362 RRIF-YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI-ACS 419
            R+F Y+    +V+++  M+ G    G  E A   F     + +P+ +++    ++ A +
Sbjct: 127 ERLFSYTKDVADVVTWTTMVTGHANTGDLERARWFF-----DAMPERNVVSWNAMLGAYA 181

Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
            +G+ ++  ++F  M            +S +V  L R+   E+AL +   M
Sbjct: 182 SAGMLSKARKLFDIMPSRNAAS-----WSSMVTGLVRSNRCEEALRVFSEM 227


>gi|242094978|ref|XP_002437979.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
 gi|241916202|gb|EER89346.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
          Length = 657

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 183/515 (35%), Positives = 284/515 (55%), Gaps = 22/515 (4%)

Query: 25  TTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMI 84
           T H L + A    +  +     L++L   L+      +D A ++F+ +  P+T + NT++
Sbjct: 135 TLHGLSVAAGYAADTFVAS--ALAKLYFKLS-----KVDDARKVFDAVPSPDTILWNTLL 187

Query: 85  RGYTQSSNPQKALSFYVNMKRKGLL-VDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGF 143
            G   S     AL  +V M   G +  D+ T    L+A      +  G  +HG  VK G 
Sbjct: 188 AGLPGSV----ALEAFVRMVEVGRVRPDSTTLASSLRAAAEASHVAMGRCVHGYGVKCGL 243

Query: 144 LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDE 203
                VV GL+ +YSKCG M CARS+F+  E  DLV++N ++ G+   G +  + E+F E
Sbjct: 244 AEHEHVVTGLMSLYSKCGDMDCARSLFDRMEDPDLVAYNALISGYSVNGMVESSVELFKE 303

Query: 204 MPQKD----AISWSIMIDGYRKKKGDISS----ARILFEHMPIKDLISWNSMIDGYAKIG 255
           +   D    + +   +I  Y     ++ +    A ++   +    L+S  ++   Y ++ 
Sbjct: 304 LAASDWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVS-TALTTLYCRLN 362

Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
           D+ +A+ +F+ MPE+ + SW+ MI GYAQ+G  + A+ LF+ M    V+P+  ++   +S
Sbjct: 363 DMESARSIFDAMPEKTMESWNAMISGYAQNGLTEMAVELFQLMQELNVQPNPTTISSTLS 422

Query: 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS 375
           ACAQ+GAL LG W+H  + +  + +++ V TALIDMY KCGS+ EAR IF  M  KNV+S
Sbjct: 423 ACAQLGALSLGTWVHRIIAKENLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVS 482

Query: 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMK 435
           +N MI+G G++G G EALK +  M    I      FL VL ACSH GL  EG ++F+ M 
Sbjct: 483 WNAMISGYGLHGRGAEALKLYKSMLDACILPTSSTFLSVLYACSHGGLVDEGQKVFRVMT 542

Query: 436 RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP-NLALWGTLLLACRNHQNVTL 494
               I P +EH +C+VDLL RAG+L +AL+++   P       +WG LL AC  H+N  L
Sbjct: 543 NEYRISPGIEHCTCMVDLLGRAGKLNEALDLISEFPQSAIGPGVWGALLSACMVHKNSDL 602

Query: 495 AEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           A++  + L EL +++ G YVLLSN+Y     +  A
Sbjct: 603 AKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEA 637


>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
 gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 586

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 144/339 (42%), Positives = 229/339 (67%), Gaps = 4/339 (1%)

Query: 228 SARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN 287
           + R+L+      D++SWN+M+ GY K GDL AA+++F  MPERN+ SWS M+D   + G 
Sbjct: 132 ARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGE 191

Query: 288 PKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI---TMDMIV 344
             EAL++F  M+ +  RPDV+ ++  + ACA +GA++ G+W+H +++         ++++
Sbjct: 192 FGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLML 251

Query: 345 QTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGI 404
           +TAL+DMY KCG +++A ++F  + +++V+ +N MI GL MNG+GE AL+ F +M  +G 
Sbjct: 252 ETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGF 311

Query: 405 PKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL 464
             ++  F+ VL AC+H+G   EG R+F+SM+ + GI+P+ EHY CL DLL RAG +E+A 
Sbjct: 312 MPNESTFIAVLCACTHTGRVDEGKRVFKSMQDY-GIKPQREHYGCLADLLGRAGNVEEAE 370

Query: 465 NIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524
            ++  MPM+P+ + WG L+ +C+ H ++ + E V + L+EL+  D G YV+L N+YA  G
Sbjct: 371 ALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNG 430

Query: 525 MWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
            WE A  IR+MM  R  KKETG S IE++G + EF+SG+
Sbjct: 431 RWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGD 469



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 125/272 (45%), Gaps = 44/272 (16%)

Query: 140 KMGFLCDVFVVNGLIGMYSKCGHMGCARSV-FEGSEIKDLVSWNLVLRGFVECGEMGKAR 198
           K G L    V N L+ +Y   G +  AR V + G    D+VSWN ++ G+ + G++G AR
Sbjct: 106 KCGALAHPVVTNSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAR 165

Query: 199 EVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKD-------LIS-------- 243
           EVF  MP+++ +SWS M+D    + G+   A  +F+ M  ++       L+S        
Sbjct: 166 EVFARMPERNLVSWSAMVDAC-VRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHL 224

Query: 244 -------W--------------------NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS 276
                  W                     +++D Y K G +  A Q+F+ +  R+V  W+
Sbjct: 225 GAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWN 284

Query: 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS 336
            MI G A +G  + AL LFR ML +G  P+  + +  + AC   G +D GK +   M+  
Sbjct: 285 AMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDY 344

Query: 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
            I         L D+  + G+++EA  +   M
Sbjct: 345 GIKPQREHYGCLADLLGRAGNVEEAEALLLDM 376



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 115/285 (40%), Gaps = 23/285 (8%)

Query: 24  TTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL--------NMDQAERLFNQIYQP 75
            T  +L++   L   D            + + S NT+        ++  A  +F ++ + 
Sbjct: 115 VTNSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPER 174

Query: 76  NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
           N    + M+    ++    +AL  +  M R+    D      VLKAC  L  +  G  +H
Sbjct: 175 NLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVH 234

Query: 136 GEVVKMGF---LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
             +    F     ++ +   L+ MY KCG M  A  VF+G   +D+V WN ++ G    G
Sbjct: 235 RYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNG 294

Query: 193 EMGKAREVFDEMPQKDAI---SWSIMIDGYRKKKGDISSARILFEHM------PIKDLIS 243
              +A E+F  M QK  +   S  I +       G +   + +F+ M      P ++   
Sbjct: 295 YGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDYGIKPQRE--H 352

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
           +  + D   + G++  A+ L  +MP E +   W  ++     H +
Sbjct: 353 YGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHND 397


>gi|147769567|emb|CAN65709.1| hypothetical protein VITISV_020733 [Vitis vinifera]
          Length = 609

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 175/502 (34%), Positives = 269/502 (53%), Gaps = 29/502 (5%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           A  LF+++   +    N+MI G+ Q     + +S +  M  +G+  D+ T   +  +   
Sbjct: 108 AYNLFSRMPXRDVASWNSMIXGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALS 167

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE--IKDLVSWN 182
           L  L     IH   +K+G   DV V N  I  Y+KCG  G A +VF+G +  +K  VSWN
Sbjct: 168 LKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTXVSWN 227

Query: 183 LVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDIS-------SARILFEH 235
            ++ G+    +  KA   F +M          +  G+R     I           +LF  
Sbjct: 228 SMIAGYAHFEQCSKAVGFFKKM----------LXGGFRADLSTILSLLSSCVQPEVLFHG 277

Query: 236 MPI----------KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
             I           D+   N++I  Y+K GD+ +A+ LF+ M  +   SW+ MI G A+ 
Sbjct: 278 KLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGXAEK 337

Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
           G+  EA+ LF  M   G +PD+++++  +S C Q GAL+LGKWI  +   + +  +++V 
Sbjct: 338 GDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVC 397

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
            ALID+Y KCGS+D AR +FY+M +K+++S+  +IAG  +NG  +EAL  F QM   G+ 
Sbjct: 398 NALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLK 457

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
            + + FL VL AC+H+G   +G+  F  M +   I P L+HYSC+ DLL R G L++A  
Sbjct: 458 PNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMADLLGRKGRLKEAFE 517

Query: 466 IVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM 525
            +++MP KP++ +W  LL AC+ HQNV + E V   L EL+      YV ++NIYA AG 
Sbjct: 518 FIQNMPFKPDVGIWSVLLSACKIHQNVVIGECVAYHLFELEPQTAVPYVQMANIYASAGK 577

Query: 526 WEHALRIRKMMRKRKIKKETGR 547
           W+    IR MM+  K  K +G 
Sbjct: 578 WDRVAAIRTMMKCNKAMKSSGE 599



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/442 (29%), Positives = 217/442 (49%), Gaps = 17/442 (3%)

Query: 54  LTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNY 113
           +T   T + ++   L+  + Q N+ +  ++ +GY       KAL  +  MK+ GL  +N 
Sbjct: 2   VTPAATQSFNRFSNLWT-VAQWNSSITESVNQGYAH-----KALLLFRQMKQNGLEPNNL 55

Query: 114 TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS 173
           T+P V KAC  L+ L     +H  VVK  F  D+FV   ++ MY KC  +G A ++F   
Sbjct: 56  TFPSVAKACSKLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRM 115

Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARIL- 232
             +D+ SWN ++ GF + G + +   +F EM  +   + S+ + G       +   ++L 
Sbjct: 116 PXRDVASWNSMIXGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLE 175

Query: 233 -FEHMPIK-----DLISWNSMIDGYAKIGDLVAAQQLFNEMPE--RNVFSWSIMIDGYAQ 284
                 IK     D+   N+ I  YAK G+   A+ +F+ + +  +   SW+ MI GYA 
Sbjct: 176 SIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTXVSWNSMIAGYAH 235

Query: 285 HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIV 344
                +A+  F++ML  G R D+ +++  +S+C Q   L  GK IH    +     D+ V
Sbjct: 236 FEQCSKAVGFFKKMLXGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQV 295

Query: 345 QTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGI 404
              LI MY KCG +  AR +F +M  K  +S+  MIAG    G  +EA+  F+ ME  G 
Sbjct: 296 INTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGXAEKGDLDEAMTLFSAMEAVGE 355

Query: 405 PKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL 464
             D +  + ++  C  +G A E  +   +     G++  L   + L+D+ ++ G ++ A 
Sbjct: 356 KPDLVTIISLMSGCGQTG-ALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNAR 414

Query: 465 NIVESMPMKPNLALWGTLLLAC 486
            +  +MP K +L  W TL+  C
Sbjct: 415 ELFYTMPEK-SLVSWTTLIAGC 435



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 63/144 (43%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++  A  LF+ +          MI G  +  +  +A++ +  M+  G   D  T   ++ 
Sbjct: 308 DIGSARYLFDNMLGKTRVSWTAMIAGXAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMS 367

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            CG    L  G  I       G   ++ V N LI +Y+KCG M  AR +F     K LVS
Sbjct: 368 GCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVS 427

Query: 181 WNLVLRGFVECGEMGKAREVFDEM 204
           W  ++ G    GE  +A  +F +M
Sbjct: 428 WTTLIAGCALNGEFKEALGLFFQM 451


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 177/511 (34%), Positives = 283/511 (55%), Gaps = 9/511 (1%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++++A ++F+   + N  + N M+  Y Q  +  K+   +  M   G+  + +TYP +L+
Sbjct: 294 DIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLR 353

Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
            C     +  G +IH   +K GF  D++V   LI MYSK G +  A+ + +  E KD+VS
Sbjct: 354 TCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVS 413

Query: 181 WNLVLRGFVECGEMGKAREVFDEM------PQKDAISWSIMIDGYRK--KKGDISSARIL 232
           W  ++ G+V+     +A E F EM      P    ++ +I      K   +G    AR+ 
Sbjct: 414 WTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVY 473

Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
                  D+  WN ++  YA+ G    A   F  +  +   +W+ +I G+AQ G  +EAL
Sbjct: 474 VSGYS-ADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEAL 532

Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
            +F +M   G + +V + + +ISA A +  +  GK IH  + ++  T +  +  ALI +Y
Sbjct: 533 KVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLY 592

Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
            KCGS+++A+  F+ MTK+N +S+N +I     +G G EAL  F QM+ +G+   D+ F+
Sbjct: 593 GKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFV 652

Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
           GVL ACSH GL  EG   F+SM    GI P+ +HY+C+VD+L RAG+L++A   VE MP+
Sbjct: 653 GVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPI 712

Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
             +  +W TLL AC+ H+N+ + E   + L+EL+  D   YVLLSN YA  G W    +I
Sbjct: 713 PADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQI 772

Query: 533 RKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
           RK+M+ R ++KE GRS IE+   +  F  G+
Sbjct: 773 RKIMKDRGVRKEPGRSWIEVKNVVHAFFVGD 803



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 123/428 (28%), Positives = 207/428 (48%), Gaps = 11/428 (2%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           +A R+F ++   +      ++ GY Q+   ++A+  Y  M R G++   Y    +L AC 
Sbjct: 95  RARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACT 154

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
                  G  IH +V K GF  + FV N LI +Y +C     A  VF      D V++N 
Sbjct: 155 KTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNT 214

Query: 184 VLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239
           ++ G  +CG   +A  +FDEM       D+++ + ++       GD+   + L  ++   
Sbjct: 215 LISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAAC-SAVGDLRKGKQLHSYLLKA 273

Query: 240 ----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
               D I   S++D Y K GD+  A Q+F+     NV  W++M+  Y Q  +  ++  +F
Sbjct: 274 GMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIF 333

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
             ML  GVRP+  +    +  C   G + LG+ IH    ++    DM V   LIDMY K 
Sbjct: 334 YRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKY 393

Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
           G LD+A+RI   + +K+V+S+  MIAG   + F +EAL+ F +M+  GI  D++     +
Sbjct: 394 GWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAI 453

Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
            AC+      +G +I   +    G    +  ++ LV L +R G  ++A +  E++  K  
Sbjct: 454 SACAGIKAVHQGSQIHARVYV-SGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEG 512

Query: 476 LALWGTLL 483
           +  W  L+
Sbjct: 513 IT-WNGLI 519



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/459 (25%), Positives = 226/459 (49%), Gaps = 23/459 (5%)

Query: 81  NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC---GVLMGLVEGTEIHGE 137
           N  + G+    +P+K L  +    R+ +++    +   L+AC   G    LV   EIH +
Sbjct: 10  NRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGRRWPLV--PEIHAK 67

Query: 138 VVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKA 197
            +  G      + N LI +Y+K G +  AR VFE   ++D VSW  VL G+ + G   +A
Sbjct: 68  AIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEA 127

Query: 198 REVFDEMPQKDAISWSIMIDGYRK---KKGDISSARILFEHMPIKDLIS----WNSMIDG 250
             ++ EM +   +    ++        K       R++   +  +   S     N++I  
Sbjct: 128 VRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISL 187

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           Y +      A ++F +M   +  +++ +I G+AQ G+   AL +F EM   G+ PD +++
Sbjct: 188 YLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTI 247

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
              ++AC+ VG L  GK +H ++ ++ +++D I++ +L+D+Y+K G ++EA +IF S  +
Sbjct: 248 ASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDR 307

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
            NV+ +N+M+   G      ++   F +M   G+  +   +  +L  C+H+G    G +I
Sbjct: 308 TNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQI 367

Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
             S+    G +  +     L+D+ S+ G L++A  I++ +  K ++  W +++     H+
Sbjct: 368 -HSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEK-DVVSWTSMIAGYVQHE 425

Query: 491 NVTLAEVVVEGLVELKADDCGLYV----LLSNIYADAGM 525
                +  +E   E++A  CG++     L S I A AG+
Sbjct: 426 ---FCKEALETFKEMQA--CGIWPDNIGLASAISACAGI 459



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 9/162 (5%)

Query: 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326
           M  R   S++  + G+    +P++ L LF     Q +    +    A+ AC   G     
Sbjct: 1   MTPRGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGR---- 56

Query: 327 KW-----IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
           +W     IH       ++   I+   LID+Y K G +  ARR+F  ++ ++ +S+  +++
Sbjct: 57  RWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLS 116

Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
           G   NG GEEA++ + +M   G+     +   +L AC+ + L
Sbjct: 117 GYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTEL 158


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 179/467 (38%), Positives = 279/467 (59%), Gaps = 16/467 (3%)

Query: 116 PFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI 175
           P V+KACG    L++G +IH  V+K+GF  DVFV   L+ MYS+ G +G AR +F+    
Sbjct: 1   PPVVKACG---DLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPA 57

Query: 176 KDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARI 231
           +D  SWN ++ G+ + G   +A ++ DEM     + DAI+ + ++     + GDI S ++
Sbjct: 58  RDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLP-VCAQVGDILSGKL 116

Query: 232 L----FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN 287
           +     +H    +L   N++I+ YAK G L  AQ++F  +  ++V SW+ +I GYAQ+G 
Sbjct: 117 IHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQNGL 175

Query: 288 PKEAL--YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
             EA+  YL  E   + + P+  + +  + A + VGAL  G  IH  + ++ +  D+ V 
Sbjct: 176 ASEAIEVYLLMEEH-EEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVG 234

Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
           T LIDMY KCG LD+A  +FY + +KN + +N MI+  G++G GE+AL+ F +M+ E + 
Sbjct: 235 TCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVK 294

Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465
            D + F+ +L ACSHSGL ++    F  M+   GI+P L+HY C+VDL  RAGELE A N
Sbjct: 295 PDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFN 354

Query: 466 IVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM 525
            ++ MP++P+ + WG LL ACR H N+ L +   E L E+ +++ G YVLLSNIYA+ G 
Sbjct: 355 FIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGK 414

Query: 526 WEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
           WE    +R + R R ++K  G S I ++  +  F +G     + EE+
Sbjct: 415 WEGVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEI 461



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 176/354 (49%), Gaps = 14/354 (3%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
            A +LF+ +   +    N MI GY Q+ N  +AL     M+ +G+ +D  T   VL  C 
Sbjct: 47  DARKLFDDMPARDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCA 106

Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
            +  ++ G  IH  V+K G   ++FV N LI MY+K G +G A+ VF G  IKD+VSWN 
Sbjct: 107 QVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVF-GLLIKDVVSWNT 165

Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAI-----SWSIMIDGYRKKKGDISSARI---LFEH 235
           ++ G+ + G   +A EV+  M + + I     +W  ++  Y          RI   + ++
Sbjct: 166 LITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKN 225

Query: 236 MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
               D+     +ID Y K G L  A  LF ++P +N   W+ MI  Y  HG+ ++AL LF
Sbjct: 226 CLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELF 285

Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR-ITMDMIVQTALIDMYMK 354
           REM  + V+PD I+ +  +SAC+  G +   +W    M+    I   +     ++D++ +
Sbjct: 286 REMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGR 345

Query: 355 CGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNG---FGEEALKCFAQMETEGI 404
            G L+ A      M  + +  ++  ++    ++G    G+ A +   ++++E +
Sbjct: 346 AGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENV 399



 Score = 40.0 bits (92), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 33/193 (17%)

Query: 29  LQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYT 88
           ++I  Q+  N L ++ F  + L+        L  D A  LF Q+ + N+   N MI  Y 
Sbjct: 216 MRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKL--DDAISLFYQVPRKNSVPWNAMISCYG 273

Query: 89  QSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF 148
              + +KAL  +  MK + +  D+ T+  +L AC    GLV   +    +++  +     
Sbjct: 274 VHGDGEKALELFREMKAERVKPDHITFVSLLSACS-HSGLVSDAQWCFNMMEEEY----- 327

Query: 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP-QK 207
                 G+     H GC         + DL         F   GE+  A     +MP Q 
Sbjct: 328 ------GIKPSLKHYGC---------MVDL---------FGRAGELEMAFNFIKKMPIQP 363

Query: 208 DAISWSIMIDGYR 220
           DA +W  +++  R
Sbjct: 364 DASAWGALLNACR 376


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 166/506 (32%), Positives = 272/506 (53%), Gaps = 39/506 (7%)

Query: 65  AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
           AE  F       T  +N ++ GY ++S P +      + +R   L D+  +P        
Sbjct: 26  AEEAFASTQLKTTTTYNCLLAGYAKASGPGR----LADARR---LFDSIPHP-------- 70

Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
                                D    N L+  +  CG +  A  VF    ++D+ SWN +
Sbjct: 71  ---------------------DAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTM 109

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-DLIS 243
           + G  + G + +A  +F  MP ++A+SW+ M+   R   GD+ +A  LF + P K D I 
Sbjct: 110 VSGLSKNGAIEEAEAMFRAMPARNAVSWNAMV-AARASSGDMGAAENLFRNAPEKTDAIL 168

Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG- 302
           W +M+ GY   G++  A + F  MP RN+ SW+ ++ GY ++    +AL +F+ M+    
Sbjct: 169 WTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAI 228

Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
           V+P+  ++   +  C+ + AL  G+ +H +  +  +   + V T+L+ MY KCG LD+A 
Sbjct: 229 VQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDAC 288

Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
           ++F  M  K+++++N MI+G   +G G +A+K F +M+ EG+  D +  L VL AC H+G
Sbjct: 289 KLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTG 348

Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
           L   G + F++M+    IEP+++HYSC+VDLL RAG LE+A+N++ SMP +P+ + +GTL
Sbjct: 349 LCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTL 408

Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
           L ACR ++N+  AE     L+E    + G YV L+NIYA A  W+   R+R+ M+   + 
Sbjct: 409 LTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVV 468

Query: 543 KETGRSVIEIDGNIKEFVSGEIFDVQ 568
           K  G S +EI G   EF S +    Q
Sbjct: 469 KTPGYSWMEIKGVRHEFRSNDRLHPQ 494



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 153/301 (50%), Gaps = 14/301 (4%)

Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGD--ISSARILFEHMPIKDLISWNSMIDG 250
           ++  A E F     K   +++ ++ GY K  G   ++ AR LF+ +P  D +S+N+++  
Sbjct: 22  DLAGAEEAFASTQLKTTTTYNCLLAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLLSC 81

Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
           +   GD+  A ++F+ MP R+V SW+ M+ G +++G  +EA  +FR M  +    + +S 
Sbjct: 82  HFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPAR----NAVSW 137

Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
              ++A A  G  D+G   ++F      T D I+ TA++  YM  G++ +A   F +M  
Sbjct: 138 NAMVAARASSG--DMGAAENLFRNAPEKT-DAILWTAMVSGYMDTGNVQKAMEYFRAMPV 194

Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL-GVLIACSHSGLATEGYR 429
           +N++S+N ++AG   N    +AL+ F  M  + I + +   L  VL+ CS+      G +
Sbjct: 195 RNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQ 254

Query: 430 IFQ-SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
           + Q  MK   G    +   + L+ +  + G+L+ A  + + M  K ++  W  ++     
Sbjct: 255 VHQWCMKLPLGRSITVG--TSLLSMYCKCGDLDDACKLFDEMHTK-DIVAWNAMISGYAQ 311

Query: 489 H 489
           H
Sbjct: 312 H 312



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 1/154 (0%)

Query: 58  NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDN-YTYP 116
           +T N+ +A   F  +   N    N ++ GY ++S    AL  +  M    ++  N  T  
Sbjct: 178 DTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLS 237

Query: 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK 176
            VL  C  L  L  G ++H   +K+     + V   L+ MY KCG +  A  +F+    K
Sbjct: 238 SVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTK 297

Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAI 210
           D+V+WN ++ G+ + G   KA ++F++M  +  +
Sbjct: 298 DIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVV 331



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 17/188 (9%)

Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLG-MNGFGE--EALKCFAQMETEGIPKDDLIFLGV 414
           L  A   F S   K   +YN ++AG    +G G   +A + F     + IP  D +    
Sbjct: 23  LAGAEEAFASTQLKTTTTYNCLLAGYAKASGPGRLADARRLF-----DSIPHPDAVSYNT 77

Query: 415 LIACSHSGLATEG-YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
           L++C  +    +G +R+F +M         +  ++ +V  LS+ G +E+A  +  +MP +
Sbjct: 78  LLSCHFACGDIDGAWRVFSTMPVR-----DVTSWNTMVSGLSKNGAIEEAEAMFRAMPAR 132

Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
            N   W  ++ A  +  ++  AE +     E    D  L+  + + Y D G  + A+   
Sbjct: 133 -NAVSWNAMVAARASSGDMGAAENLFRNAPE--KTDAILWTAMVSGYMDTGNVQKAMEYF 189

Query: 534 KMMRKRKI 541
           + M  R +
Sbjct: 190 RAMPVRNL 197



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 61  NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
           ++D A +LF++++  +    N MI GY Q    +KA+  +  MK +G++ D  T   VL 
Sbjct: 283 DLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLT 342

Query: 121 AC 122
           AC
Sbjct: 343 AC 344


>gi|414589212|tpg|DAA39783.1| TPA: hypothetical protein ZEAMMB73_012385 [Zea mays]
          Length = 590

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 187/601 (31%), Positives = 295/601 (49%), Gaps = 84/601 (13%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL---MSLTSPNTLNMDQAER 67
           ++  L+ +L+  K+  H+LQ  AQL    L   P  L  L+    S++  +      A  
Sbjct: 1   MEQELLQILRGLKSPRHLLQTHAQLLARGLSASPRLLPVLVSAAFSVSPSSPRQAAAAAI 60

Query: 68  LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK----------GLLVDNYTYPF 117
           L       +T  HNT+I                 +              G+  + +T+ F
Sbjct: 61  LGAAGSGASTVAHNTLIERLAGIGGGGGGGGRGCSAADALAAYAAMRAAGVYPNGFTFTF 120

Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC---GHMGCARSVF---- 170
           +L+AC  L  L     +HG++V+ GF  DV V N L+ +Y KC   G +G AR VF    
Sbjct: 121 LLRACESLRRLFLCRCVHGQIVRCGFGSDVVVQNALLNVYYKCSDPGDVGIARQVFDEMA 180

Query: 171 ---------------------------EGSEIKDLVSWNLVLRGFVECGEMGKAREVFDE 203
                                      E    +++VSWN ++  F   G+M  AR VFD 
Sbjct: 181 NRDVVSWNSIVGVYMSNGDAAGAMELFEAMPERNVVSWNTIVAAFTRAGDMVSARAVFDR 240

Query: 204 MPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQL 263
           MP +DAISW++MI GY    G++ SA  LF+ M  KD++SW +M+  YAKIG+L +A+ L
Sbjct: 241 MPIRDAISWNLMISGY-ATSGNVESAWSLFDIMDRKDVVSWTAMVSAYAKIGELDSARVL 299

Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGA 322
           F++MP++N+ SW+ MI GY  +    +AL  F++M+ +G   PD  +++  +SACAQ+G+
Sbjct: 300 FDQMPDKNLVSWNAMITGYNHNLRYDDALCTFQQMMLEGRFMPDEATLVSVVSACAQLGS 359

Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
           ++   WI  ++ +S   + + +  AL+DM+ KCG +  A  +F  M  +  I++  MI+G
Sbjct: 360 VEYCNWISSYISKSNTHITVALGNALVDMFAKCGDVGRAHLVFNKMKTRCTITWTTMISG 419

Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442
              NG   EAL  +  M  EG+  DD +F+  L AC+H GL  EG+ IF  M  +C I P
Sbjct: 420 FAYNGQFREALLVYNDMCREGVTLDDTVFVAALGACAHGGLLQEGWSIFNQMVEYCRIVP 479

Query: 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
           ++EHY C+VDLL RA                                    L+E V   +
Sbjct: 480 RMEHYGCIVDLLGRA-----------------------------------ELSEYVSTKI 504

Query: 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSG 562
           VE++  +    VL+SN  A  G W+  +  R+ MR   ++K  G S+I++   + EF++ 
Sbjct: 505 VEMEPFNSSYQVLVSNCSALEGRWDSVMDARRTMRDCGVEKTPGSSLIQVGNEVHEFLAK 564

Query: 563 E 563
           +
Sbjct: 565 D 565


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 170/503 (33%), Positives = 282/503 (56%), Gaps = 13/503 (2%)

Query: 64  QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
           +A  +F  + + N      M++GY Q     +A S +  M  +  +  ++T  F      
Sbjct: 97  EARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEV--SWTVMF------ 148

Query: 124 VLMGLVEGTEIHG--EVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
              GL++   I    ++  M  + DV     +IG   + G +  AR +F+    +++V+W
Sbjct: 149 --GGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTW 206

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
             ++ G+ +   +  AR++F+ MP+K  +SW+ M+ GY    G I  A   FE MP+K +
Sbjct: 207 TTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGY-TLSGRIEDAEEFFEVMPMKPV 265

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
           I+ N+MI G+ ++G++  A+++F+ M +R+  +W  MI  Y + G   EAL LF +M  Q
Sbjct: 266 IACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQ 325

Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
           GVRP   S++  +S CA + +L  G+ +H  + R +   D+ V + L+ MY+KCG L +A
Sbjct: 326 GVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKA 385

Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
           + +F   + K++I +N +I+G   +G GEEALK F +M + G   + +  + +L ACS++
Sbjct: 386 KLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYA 445

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
           G   EG  IF+SM+    + P +EHYSC VD+L RAG++++A+ ++ESM +KP+  +WG 
Sbjct: 446 GKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGA 505

Query: 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
           LL AC+ H  + LAEV  + L E + D+ G YVLLS+I A    W     +RK MR   +
Sbjct: 506 LLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNV 565

Query: 542 KKETGRSVIEIDGNIKEFVSGEI 564
            K  G S IE+   +  F  G I
Sbjct: 566 SKFPGCSWIEVGKKVHMFTRGGI 588



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 177/344 (51%), Gaps = 11/344 (3%)

Query: 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
           +V   NGL+  Y K   +  AR+VFE    +++VSW  +++G+++ G +G+A  +F  MP
Sbjct: 78  NVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMP 137

Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
           +++ +SW++M  G     G I  AR L++ MP+KD+++  +MI G  + G +  A+ +F+
Sbjct: 138 ERNEVSWTVMFGGL-IDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFD 196

Query: 266 EMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325
           EM ERNV +W+ MI GY Q+     A  LF E++ +       S++   +   ++   D 
Sbjct: 197 EMRERNVVTWTTMITGYRQNNRVDVARKLF-EVMPEKTEVSWTSMLLGYTLSGRIE--DA 253

Query: 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM 385
            ++  V   +      +I   A+I  + + G + +ARR+F  M  ++  ++  MI     
Sbjct: 254 EEFFEVMPMKP-----VIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYER 308

Query: 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445
            GF  EAL  FAQM+ +G+       + +L  C+       G ++   + R C  +  + 
Sbjct: 309 KGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVR-CQFDDDVY 367

Query: 446 HYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489
             S L+ +  + GEL +A  + +    K ++ +W +++    +H
Sbjct: 368 VASVLMTMYVKCGELVKAKLVFDRFSSK-DIIMWNSIISGYASH 410



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 181/376 (48%), Gaps = 24/376 (6%)

Query: 154 IGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWS 213
           I   S+ G +  AR  F+  + K + SWN ++ G+   G   +AR++FDEM +++ +SW+
Sbjct: 24  ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWN 83

Query: 214 IMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
            ++ GY K +  I  AR +FE MP ++++SW +M+ GY + G +  A+ LF  MPERN  
Sbjct: 84  GLVSGYIKNRM-IVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEV 142

Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
           SW++M  G    G   +A  L+  M  +    DV++    I    + G +D  + I   M
Sbjct: 143 SWTVMFGGLIDDGRIDKARKLYDMMPVK----DVVASTNMIGGLCREGRVDEARLIFDEM 198

Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
           +   +    +  T +I  Y +   +D AR++F  M +K  +S+  M+ G  ++G  E+A 
Sbjct: 199 RERNV----VTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAE 254

Query: 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
           + F  M  + +   + + +G        G  ++  R+F  M+     +     +  ++  
Sbjct: 255 EFFEVMPMKPVIACNAMIVGF----GEVGEISKARRVFDLME-----DRDNATWRGMIKA 305

Query: 454 LSRAGELEQALNIVESMP---MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510
             R G   +AL++   M    ++P+     ++L  C    ++     V   LV  + DD 
Sbjct: 306 YERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDD- 364

Query: 511 GLYV--LLSNIYADAG 524
            +YV  +L  +Y   G
Sbjct: 365 DVYVASVLMTMYVKCG 380



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 152/351 (43%), Gaps = 82/351 (23%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           +D+A  +F+++ + N     TMI GY Q++         V++ RK   V           
Sbjct: 188 VDEARLIFDEMRERNVVTWTTMITGYRQNNR--------VDVARKLFEV----------- 228

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
                 + E TE+    + +G              Y+  G +  A   FE   +K +++ 
Sbjct: 229 ------MPEKTEVSWTSMLLG--------------YTLSGRIEDAEEFFEVMPMKPVIAC 268

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-- 239
           N ++ GF E GE+ KAR VFD M  +D  +W  MI  Y +K  ++  A  LF  M  +  
Sbjct: 269 NAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFEL-EALDLFAQMQKQGV 327

Query: 240 -------------------------------------DLISWNSMIDGYAKIGDLVAAQQ 262
                                                D+   + ++  Y K G+LV A+ 
Sbjct: 328 RPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKL 387

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F+    +++  W+ +I GYA HG  +EAL +F EM   G  P+ ++++  ++AC+  G 
Sbjct: 388 VFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGK 447

Query: 323 LDLGKWIHVFMKRSRITMDMIVQ--TALIDMYMKCGSLDEARRIFYSMTKK 371
           L+ G  I   M+ S+  +   V+  +  +DM  + G +D+A  +  SMT K
Sbjct: 448 LEEGLEIFESME-SKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIK 497



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 118/272 (43%), Gaps = 38/272 (13%)

Query: 62  MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
           + +A R+F+ +   +      MI+ Y +     +AL  +  M+++G+     +   +L  
Sbjct: 281 ISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSV 340

Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
           C  L  L  G ++H  +V+  F  DV+V + L+ MY KCG +  A+ VF+    KD++ W
Sbjct: 341 CATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMW 400

Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
           N ++ G+   G   +A ++F EMP                              MP K  
Sbjct: 401 NSIISGYASHGLGEEALKIFHEMPSSGT--------------------------MPNK-- 432

Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPER-----NVFSWSIMIDGYAQHGNPKEALYLFR 296
           ++  +++   +  G L    ++F  M  +      V  +S  +D   + G   +A+ L  
Sbjct: 433 VTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIE 492

Query: 297 EMLCQGVRPDVISVMGA-ISACAQVGALDLGK 327
            M    ++PD  +V GA + AC     LDL +
Sbjct: 493 SMT---IKPDA-TVWGALLGACKTHSRLDLAE 520



 Score = 38.9 bits (89), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 32/157 (20%), Positives = 73/157 (46%), Gaps = 10/157 (6%)

Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
           K + + ++R+ +T   +  +  I    + G ++EAR+ F S+  K + S+N +++G   N
Sbjct: 2   KRLKLILRRTYLTSTGVNCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSN 61

Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
           G  +EA + F +M    +    + + G++     + +  E   +F+ M      E  +  
Sbjct: 62  GLPKEARQLFDEMSERNV----VSWNGLVSGYIKNRMIVEARNVFELMP-----ERNVVS 112

Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
           ++ +V    + G + +A ++   MP + N   W  + 
Sbjct: 113 WTAMVKGYMQEGMVGEAESLFWRMPER-NEVSWTVMF 148


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 181/545 (33%), Positives = 277/545 (50%), Gaps = 47/545 (8%)

Query: 63  DQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
           D A  LF  I  P+   +N ++    Q      AL F   M     +++ Y++   L AC
Sbjct: 98  DDALALFGAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSAC 157

Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
                   G ++H  V K     DV++   L+ MY+KC     A+ VF+    +++VSWN
Sbjct: 158 ASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWN 217

Query: 183 -----------------LVLR----GFVE-----------CGEMGKARE--------VFD 202
                            L +R    GFV            C  +   RE        V  
Sbjct: 218 SLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKS 277

Query: 203 EMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQ 262
           +  ++D +  + ++D Y  K G    A+ +F+ M I+ ++S  SMI GYAK  ++  AQ 
Sbjct: 278 DRFREDMVLNNALVDMY-AKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQA 336

Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
           +F +M E+NV +W+++I  YA +   +EAL LF  +  + V P   +    ++ACA +  
Sbjct: 337 VFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLAN 396

Query: 323 LDLGKWIHV------FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISY 376
           L LG+  HV      F   S    D+ V  +L+DMY+K GS+ +  ++F  M  ++ +S+
Sbjct: 397 LQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSW 456

Query: 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436
           N MI G   NG  ++AL  F +M       D +  +GVL AC HSGL  EG R FQSM  
Sbjct: 457 NAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTE 516

Query: 437 HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAE 496
             GI P  +HY+C++DLL RAG L++   ++E+MPM+P+  LW +LL ACR H+N+ + E
Sbjct: 517 DHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRLHKNIDMGE 576

Query: 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNI 556
                L EL  D+ G YVLLSN+YA+ G W    R+R+ M+ R + K+ G S IEI   +
Sbjct: 577 WAAGKLFELDPDNSGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQPGCSWIEIGRKV 636

Query: 557 KEFVS 561
             F++
Sbjct: 637 NVFLA 641



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 186/423 (43%), Gaps = 88/423 (20%)

Query: 143 FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFD 202
           F  + F++N L+  Y++ G +  AR VF+G   ++  S+N +L      G    A  +F 
Sbjct: 46  FAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFG 105

Query: 203 EMPQKDAISWSIMIDGYRK--KKGDI--------------------------SSARILFE 234
            +P  D  S++ ++    +  + GD                           +S +    
Sbjct: 106 AIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRT 165

Query: 235 HMPIKDLISWNS----------MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQ 284
              +  L++ +S          ++D YAK      AQ++F+ MPERN+ SW+ +I  Y Q
Sbjct: 166 GEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQ 225

Query: 285 HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM-KRSRITMDMI 343
           +G   EAL LF  M+  G  PD +++   +SACA + A   G+ +H  M K  R   DM+
Sbjct: 226 NGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMV 285

Query: 344 VQTALIDMYMKCG-------------------------------SLDEARRIFYSMTKKN 372
           +  AL+DMY KCG                               ++ +A+ +F  M +KN
Sbjct: 286 LNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKN 345

Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC-----------SHS 421
           V+++NV+IA    N   EEAL+ F +++ E +      +  VL AC           +H 
Sbjct: 346 VVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHV 405

Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
            +  EG+R F S     G E  +   + LVD+  + G +     + E M  + N++ W  
Sbjct: 406 HVLKEGFR-FDS-----GPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVS-WNA 458

Query: 482 LLL 484
           +++
Sbjct: 459 MIV 461



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 157/318 (49%), Gaps = 4/318 (1%)

Query: 224 GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
           G +  AR +F+ MP ++  S+N+++   A++G    A  LF  +P+ +  S++ ++   A
Sbjct: 64  GSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDPDQCSYNAVVAALA 123

Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
           QHG   +AL     M       +  S   A+SACA   A   G+ +H  + +S    D+ 
Sbjct: 124 QHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHALVTKSSHGSDVY 183

Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
           + TAL+DMY KC   +EA+++F +M ++N++S+N +I     NG  +EAL  F +M  +G
Sbjct: 184 IGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDG 243

Query: 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
              D++    V+ AC+      EG ++   M +       +   + LVD+ ++ G   +A
Sbjct: 244 FVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEA 303

Query: 464 LNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA 523
             + + M ++ ++    +++       NV  A+ V   +VE    +   + +L   YA  
Sbjct: 304 KCVFDRMAIR-SVVSETSMITGYAKSANVGDAQAVFLQMVE---KNVVAWNVLIATYAHN 359

Query: 524 GMWEHALRIRKMMRKRKI 541
              E ALR+   +++  +
Sbjct: 360 SEEEEALRLFVRLKRESV 377



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 127/294 (43%), Gaps = 25/294 (8%)

Query: 11  LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
           L N LV +      T     +  ++    +++E   ++    S       N+  A+ +F 
Sbjct: 286 LNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSA------NVGDAQAVFL 339

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
           Q+ + N    N +I  Y  +S  ++AL  +V +KR+ +   +YTY  VL AC  L  L  
Sbjct: 340 QMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQL 399

Query: 131 GTEIHGEVVKMGFL------CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
           G + H  V+K GF        DVFV N L+ MY K G +     VFE    +D VSWN +
Sbjct: 400 GQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAM 459

Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGD---ISSARILFEHM----- 236
           + G+ + G    A  +F+ M   +    S+ + G     G    +   R  F+ M     
Sbjct: 460 IVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHG 519

Query: 237 --PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGN 287
             P +D   +  MID   + G L   ++L   MP E +   W+ ++     H N
Sbjct: 520 IIPTRD--HYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRLHKN 571


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 185/581 (31%), Positives = 321/581 (55%), Gaps = 44/581 (7%)

Query: 29  LQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP--NTYMHNTMIRG 86
           LQ+ A LT   L  + F+ + L+ +       +   A ++F+++ +   +      +I  
Sbjct: 72  LQVHAYLTRLGLAADRFSAAALVDAYGKCG--HAYYAAQVFDEMPEGSVDVVSWTALISA 129

Query: 87  YTQSSNPQKALSFYVNMK-------RKGLLVDNYTYPFVLKACGVLMG---LVEGTEIHG 136
           Y+ +    +A   +  M+        +   VD  +   ++ AC V  G   L  G+ +HG
Sbjct: 130 YSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHG 189

Query: 137 EVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI--KDLVSWNLVLRGFVECGEM 194
            VVK GF     + N ++ MYS C  +G A  VF G  I  +D+VSWN ++ GF   GE 
Sbjct: 190 LVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEA 249

Query: 195 GKAREVFDEM---------PQKDAISWSIMIDGYRKKKGDISSARILFEHMP-------- 237
            +A   F++M         P +  +   I +     + G + ++  + E++         
Sbjct: 250 ERALRTFEDMVSEGTSAVEPNRVTV---IALLKSCAELGCVETSSWVHEYISSRHSSLLV 306

Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
            KD++   +++D +A+ G+L  A+++F+ +  +NV  WS MI GY Q   P+EAL LFR+
Sbjct: 307 AKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQ 366

Query: 298 MLCQG------VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
           ML +G      V+P+ ++++  I+AC+++GA      IH +   + +  D  + +ALIDM
Sbjct: 367 MLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDM 426

Query: 352 YMKCGSLDEARRIFYSM--TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
             KCG ++  R++F  M  + + V+S++ MI   G++G G+ AL+ F++M T G   +++
Sbjct: 427 CAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEI 486

Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
            ++ VL ACSH+GL  +G   F SM++  G+ P  +HY+CLVDLL RAG L++A N++ +
Sbjct: 487 TYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILN 546

Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
           MP+K +LALWG+LL AC  H N  L E+V + ++ L ++  G +VLL+N+Y DAG W+  
Sbjct: 547 MPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDV 606

Query: 530 LRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570
           +R+R  +R+  ++K  G+S IEI   +  F++ +    +SE
Sbjct: 607 VRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESE 647



 Score =  184 bits (468), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 217/453 (47%), Gaps = 43/453 (9%)

Query: 71  QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
            I   +T+  N++I     + NPQ AL+F+  M+   +  +N+T+P +LKAC  L  L+ 
Sbjct: 12  SISHKDTFHWNSLI-AKNATQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLP 70

Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF----EGSEIKDLVSWNLVLR 186
             ++H  + ++G   D F    L+  Y KCGH   A  VF    EGS   D+VSW  ++ 
Sbjct: 71  TLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGS--VDVVSWTALIS 128

Query: 187 GFVECGEMGKAREVFDEMPQK-----------DAISWSIMIDGYRK-------KKGDISS 228
            +   G + +A   F  M              D +S   ++            ++G    
Sbjct: 129 AYSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVH 188

Query: 229 ARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP--ERNVFSWSIMIDGYAQHG 286
             ++     +   +  NSM+  Y+   D+  A ++FN +P  +R+V SW+ +I G+  +G
Sbjct: 189 GLVVKYGFGVSTHLG-NSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNG 247

Query: 287 NPKEALYLFREMLCQG---VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR----IT 339
             + AL  F +M+ +G   V P+ ++V+  + +CA++G ++   W+H ++        + 
Sbjct: 248 EAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVA 307

Query: 340 MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399
            D++V TAL+DM+ +CG+L  AR IF  +  KNV+ ++ MIAG       EEAL+ F QM
Sbjct: 308 KDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQM 367

Query: 400 ETEG------IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
             EG      +  + +  + V+ ACS  G A+    +        G++      S L+D+
Sbjct: 368 LMEGNMVGVEVKPNAVTLVSVIAACSRLG-ASRSASMIHKYAVATGLDQDARIASALIDM 426

Query: 454 LSRAGELEQALNIVESMPMKPNLAL-WGTLLLA 485
            ++ G++E    +   M       + W +++ A
Sbjct: 427 CAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGA 459


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.137    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,582,812,185
Number of Sequences: 23463169
Number of extensions: 349010720
Number of successful extensions: 1001871
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9264
Number of HSP's successfully gapped in prelim test: 2576
Number of HSP's that attempted gapping in prelim test: 783829
Number of HSP's gapped (non-prelim): 59031
length of query: 586
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 438
effective length of database: 8,886,646,355
effective search space: 3892351103490
effective search space used: 3892351103490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.4 bits)