BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007871
(586 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 447 bits (1151), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/560 (40%), Positives = 356/560 (63%), Gaps = 7/560 (1%)
Query: 26 THILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIR 85
+ Q+ AQ+ +L + +L+ +L+ N+ A R+FNQ+ +PN ++ N++IR
Sbjct: 33 NQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNL--AVRVFNQVQEPNVHLCNSLIR 90
Query: 86 GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC 145
+ Q+S P +A + M+R GL DN+TYPF+LKAC L +H + K+G
Sbjct: 91 AHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSS 150
Query: 146 DVFVVNGLIGMYSKCGHMGC--ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDE 203
D++V N LI YS+CG +G A +FE +D VSWN +L G V+ GE+ AR +FDE
Sbjct: 151 DIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDE 210
Query: 204 MPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQL 263
MPQ+D ISW+ M+DGY + + ++S A LFE MP ++ +SW++M+ GY+K GD+ A+ +
Sbjct: 211 MPQRDLISWNTMLDGYARCR-EMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVM 269
Query: 264 FNEMP--ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
F++MP +NV +W+I+I GYA+ G KEA L +M+ G++ D +V+ ++AC + G
Sbjct: 270 FDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESG 329
Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
L LG IH +KRS + + V AL+DMY KCG+L +A +F + KK+++S+N M+
Sbjct: 330 LLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLH 389
Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
GLG++G G+EA++ F++M EGI D + F+ VL +C+H+GL EG F SM++ +
Sbjct: 390 GLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLV 449
Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEG 501
P++EHY CLVDLL R G L++A+ +V++MPM+PN+ +WG LL ACR H V +A+ V++
Sbjct: 450 PQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDN 509
Query: 502 LVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
LV+L D G Y LLSNIYA A WE IR M+ ++K +G S +E++ I EF
Sbjct: 510 LVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTV 569
Query: 562 GEIFDVQSEELELVIQSFVK 581
+ +S+++ ++ S ++
Sbjct: 570 FDKSHPKSDQIYQMLGSLIE 589
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 413 bits (1061), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/604 (36%), Positives = 349/604 (57%), Gaps = 49/604 (8%)
Query: 10 SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLF 69
SL VSL Q+ +T H+++ ++P++ S+L + +++ A ++F
Sbjct: 35 SLIERCVSLRQLKQTHGHMIR-------TGTFSDPYSASKLFAMAALSSFASLEYARKVF 87
Query: 70 NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDN-YTYPFVLKACGVLMGL 128
++I +PN++ NT+IR Y +P ++ +++M + N YT+PF++KA + L
Sbjct: 88 DEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSL 147
Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
G +HG VK DVFV N LI Y CG + A VF + KD+VSWN ++ GF
Sbjct: 148 SLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGF 207
Query: 189 VECGEMGKAREVFDEMPQKDAISWSI---------------------------------- 214
V+ G KA E+F +M +D + +
Sbjct: 208 VQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNL 267
Query: 215 -----MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269
M+D Y K G I A+ LF+ M KD ++W +M+DGYA D AA+++ N MP+
Sbjct: 268 TLANAMLDMY-TKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQ 326
Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREM-LCQGVRPDVISVMGAISACAQVGALDLGKW 328
+++ +W+ +I Y Q+G P EAL +F E+ L + ++ + I+++ +SACAQVGAL+LG+W
Sbjct: 327 KDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRW 386
Query: 329 IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
IH ++K+ I M+ V +ALI MY KCG L+++R +F S+ K++V ++ MI GL M+G
Sbjct: 387 IHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGC 446
Query: 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
G EA+ F +M+ + + + F V ACSH+GL E +F M+ + GI P+ +HY+
Sbjct: 447 GNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYA 506
Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508
C+VD+L R+G LE+A+ +E+MP+ P+ ++WG LL AC+ H N+ LAE+ L+EL+
Sbjct: 507 CIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPR 566
Query: 509 DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQ 568
+ G +VLLSNIYA G WE+ +RK MR +KKE G S IEIDG I EF+SG+
Sbjct: 567 NDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPM 626
Query: 569 SEEL 572
SE++
Sbjct: 627 SEKV 630
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/605 (36%), Positives = 345/605 (57%), Gaps = 41/605 (6%)
Query: 9 FSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERL 68
F L NPL+SLL+ K H+ QI AQ+ N LI +PF S+L+ + +D + ++
Sbjct: 50 FVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKI 109
Query: 69 FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL---VDNYTYPFVLKACGVL 125
I PN + N IRG+++S NP+++ Y M R G D++TYP + K C L
Sbjct: 110 LKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADL 169
Query: 126 MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL 185
G I G V+K+ V N I M++ CG M AR VF+ S ++DLVSWN ++
Sbjct: 170 RLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLI 229
Query: 186 RGFVECGEMGKAREVFDEMPQK----DAI-------SWSIMIDGYRKKK----------- 223
G+ + GE KA V+ M + D + S S++ D R K+
Sbjct: 230 NGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLR 289
Query: 224 ----------------GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
GDI AR +F+++ + ++SW +MI GYA+ G L +++LF++M
Sbjct: 290 MTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDM 349
Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK 327
E++V W+ MI G Q ++AL LF+EM +PD I+++ +SAC+Q+GALD+G
Sbjct: 350 EEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGI 409
Query: 328 WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
WIH ++++ +++++ + T+L+DMY KCG++ EA +F+ + +N ++Y +I GL ++G
Sbjct: 410 WIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHG 469
Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
A+ F +M GI D++ F+G+L AC H G+ G F MK + P+L+HY
Sbjct: 470 DASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHY 529
Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
S +VDLL RAG LE+A ++ESMPM+ + A+WG LL CR H NV L E + L+EL
Sbjct: 530 SIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDP 589
Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDV 567
D G+YVLL +Y +A MWE A R R+MM +R ++K G S IE++G + EF+ +
Sbjct: 590 SDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRP 649
Query: 568 QSEEL 572
+SE++
Sbjct: 650 ESEKI 654
>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880
OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/525 (37%), Positives = 328/525 (62%), Gaps = 7/525 (1%)
Query: 56 SPNTLNMDQAERLFNQIYQ-PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV-DNY 113
S + + + A +LF+Q Q ++++ N+MI+ Y ++ + + Y +++++ DN+
Sbjct: 20 SASAVGIGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNF 79
Query: 114 TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS 173
T+ + K+C + M + +G ++H ++ + GF D++V G++ MY+K G MGCAR+ F+
Sbjct: 80 TFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEM 139
Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ-KDAISWSIMIDGYRKKKGDISSARIL 232
+ VSW ++ G++ CGE+ A ++FD+MP KD + ++ M+DG+ K GD++SAR L
Sbjct: 140 PHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGF-VKSGDMTSARRL 198
Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
F+ M K +I+W +MI GY I D+ AA++LF+ MPERN+ SW+ MI GY Q+ P+E +
Sbjct: 199 FDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGI 258
Query: 293 YLFREM-LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
LF+EM + PD ++++ + A + GAL LG+W H F++R ++ + V TA++DM
Sbjct: 259 RLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDM 318
Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
Y KCG +++A+RIF M +K V S+N MI G +NG AL F M E P D++
Sbjct: 319 YSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEEKP-DEITM 377
Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
L V+ AC+H GL EG + F M R G+ K+EHY C+VDLL RAG L++A +++ +MP
Sbjct: 378 LAVITACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMP 436
Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
+PN + + L AC ++++ AE +++ VEL+ + G YVLL N+YA W+
Sbjct: 437 FEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGM 496
Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
++ +MRK + KKE G S+IEI+ + EF+SG+ + LV+
Sbjct: 497 VKNVMRKNQAKKEVGCSLIEINYIVSEFISGDTTHPHRRSIHLVL 541
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust.
Identities = 232/628 (36%), Positives = 359/628 (57%), Gaps = 53/628 (8%)
Query: 10 SLKN-PLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAER 67
S++N P +SLL KT + I AQ+ L + LS+L+ + SP+ + A
Sbjct: 30 SIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAIS 89
Query: 68 LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
+F I +PN + NTM RG+ SS+P AL YV M GLL ++YT+PFVLK+C
Sbjct: 90 VFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKA 149
Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
EG +IHG V+K+G D++V LI MY + G + A VF+ S +D+VS+ +++G
Sbjct: 150 FKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKG 209
Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFE------------- 234
+ G + A+++FDE+P KD +SW+ MI GY + G+ A LF+
Sbjct: 210 YASRGYIENAQKLFDEIPVKDVVSWNAMISGY-AETGNYKEALELFKDMMKTNVRPDEST 268
Query: 235 --------------------HMPIKD------LISWNSMIDGYAKIGDLVAAQQLFNEMP 268
H+ I D L N++ID Y+K G+L A LF +P
Sbjct: 269 MVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLP 328
Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328
++V SW+ +I GY KEAL LF+EML G P+ ++++ + ACA +GA+D+G+W
Sbjct: 329 YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 388
Query: 329 IHVFM-KRSR-ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
IHV++ KR + +T ++T+LIDMY KCG ++ A ++F S+ K++ S+N MI G M+
Sbjct: 389 IHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMH 448
Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
G + + F++M GI DD+ F+G+L ACSHSG+ G IF++M + + PKLEH
Sbjct: 449 GRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEH 508
Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506
Y C++DLL +G ++A ++ M M+P+ +W +LL AC+ H NV L E E L++++
Sbjct: 509 YGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIE 568
Query: 507 ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFD 566
++ G YVLLSNIYA AG W + R ++ + +KK G S IEID + EF+ G+ F
Sbjct: 569 PENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFH 628
Query: 567 VQS-------EELELVIQS--FVKTTIE 585
++ EE+E++++ FV T E
Sbjct: 629 PRNREIYGMLEEMEVLLEKAGFVPDTSE 656
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/574 (35%), Positives = 342/574 (59%), Gaps = 18/574 (3%)
Query: 16 VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
SL+ + + QI A+L L F +++L+ + +S + A ++F+ + +P
Sbjct: 25 ASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITF--ARQVFDDLPRP 82
Query: 76 NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
+ N +IRGY+++++ Q AL Y NM+ + D++T+P +LKAC L L G +H
Sbjct: 83 QIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVH 142
Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI--KDLVSWNLVLRGFVECGE 193
+V ++GF DVFV NGLI +Y+KC +G AR+VFEG + + +VSW ++ + + GE
Sbjct: 143 AQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGE 202
Query: 194 MGKAREVFDEMPQKDA-ISWSIMIDGYRK-------KKGDISSARILFEHMPIKD--LIS 243
+A E+F +M + D W ++ K+G A ++ + I+ LIS
Sbjct: 203 PMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLIS 262
Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
N+M YAK G + A+ LF++M N+ W+ MI GYA++G +EA+ +F EM+ + V
Sbjct: 263 LNTM---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDV 319
Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
RPD IS+ AISACAQVG+L+ + ++ ++ RS D+ + +ALIDM+ KCGS++ AR
Sbjct: 320 RPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARL 379
Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
+F ++V+ ++ MI G G++G EA+ + ME G+ +D+ FLG+L+AC+HSG+
Sbjct: 380 VFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGM 439
Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
EG+ F M H I P+ +HY+C++DLL RAG L+QA +++ MP++P + +WG LL
Sbjct: 440 VREGWWFFNRMADH-KINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALL 498
Query: 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
AC+ H++V L E + L + + G YV LSN+YA A +W+ +R M+++ + K
Sbjct: 499 SACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNK 558
Query: 544 ETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
+ G S +E+ G ++ F G+ + EE+E ++
Sbjct: 559 DVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVE 592
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/608 (33%), Positives = 344/608 (56%), Gaps = 39/608 (6%)
Query: 15 LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
+S+L + KTT Q+ +Q T + P +L + S ++ A +LF +I +
Sbjct: 37 FISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPE 96
Query: 75 PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG-LVEGTE 133
P+ + N MI+G+++ + + Y+NM ++G+ D++T+PF+L G L G +
Sbjct: 97 PDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKK 156
Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
+H VVK G +++V N L+ MYS CG M AR VF+ +D+ SWNL++ G+ E
Sbjct: 157 LHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKE 216
Query: 194 MGKAREVFDEMPQK----DAISWSIMIDGYRKKK-------------------------- 223
++ E+ EM + +++ +++ K K
Sbjct: 217 YEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENA 276
Query: 224 --------GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
G++ A +F M +D+ISW S++ GY + G+L A+ F++MP R+ SW
Sbjct: 277 LVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISW 336
Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
+IMIDGY + G E+L +FREM G+ PD +++ ++ACA +G+L++G+WI ++ +
Sbjct: 337 TIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDK 396
Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
++I D++V ALIDMY KCG ++A+++F+ M +++ ++ M+ GL NG G+EA+K
Sbjct: 397 NKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKV 456
Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
F QM+ I DD+ +LGVL AC+HSG+ + + F M+ IEP L HY C+VD+L
Sbjct: 457 FFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLG 516
Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515
RAG +++A I+ MPM PN +WG LL A R H + +AE+ + ++EL+ D+ +Y L
Sbjct: 517 RAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYAL 576
Query: 516 LSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELV 575
L NIYA W+ +R+ + IKK G S+IE++G EFV+G+ +QSEE+ +
Sbjct: 577 LCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMK 636
Query: 576 IQSFVKTT 583
++ + +
Sbjct: 637 LEELAQES 644
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 382 bits (980), Expect = e-105, Method: Compositional matrix adjust.
Identities = 216/592 (36%), Positives = 328/592 (55%), Gaps = 43/592 (7%)
Query: 16 VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNM-DQAERLFNQIYQ 74
+ +L KT+ + QI +L +I ++++++ S + D A +F++ +
Sbjct: 16 IHVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYHV 75
Query: 75 --------PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
+ ++ N +I+ ++ +P++AL M G+ VD ++ VLKAC L
Sbjct: 76 CSFSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLG 135
Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
+ G +IHG + K G D+F+ N LIG+Y KCG +G +R +F+ +D VS+N ++
Sbjct: 136 FVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMID 195
Query: 187 GFVECGEMGKAREVFDEMPQ--KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
G+V+CG + ARE+FD MP K+ ISW+ MI GY + + A LF MP KDLISW
Sbjct: 196 GYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISW 255
Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV- 303
NSMIDGY K G + A+ LF+ MP R+V +W+ MIDGYA+ G A LF +M + V
Sbjct: 256 NSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVV 315
Query: 304 -------------------------------RPDVISVMGAISACAQVGALDLGKWIHVF 332
PD +++ + A AQ+G L +H++
Sbjct: 316 AYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLY 375
Query: 333 MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
+ + + + ALIDMY KCGS+ A +F + K++ +N MI GL ++G GE A
Sbjct: 376 IVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESA 435
Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
Q+E + DD+ F+GVL ACSHSGL EG F+ M+R IEP+L+HY C+VD
Sbjct: 436 FDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVD 495
Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
+LSR+G +E A N++E MP++PN +W T L AC +H+ E+V + L+ +
Sbjct: 496 ILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSS 555
Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEI 564
YVLLSN+YA GMW+ R+R MM++RKI+K G S IE+DG + EF I
Sbjct: 556 YVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFVDSI 607
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 201/545 (36%), Positives = 315/545 (57%), Gaps = 42/545 (7%)
Query: 18 LLQISKTTTHILQILAQLTTNDLITEPFTLSQLL--MSLTSPNTLNMDQAERLFNQIYQP 75
L Q K + QI A + N L++ + +L+ SL+ P L A +LF++I +P
Sbjct: 18 LWQNCKNIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKY--AHKLFDEIPKP 75
Query: 76 NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
+ + N ++RG QS P+K +S Y M+++G+ D YT+ FVLKAC L G H
Sbjct: 76 DVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFH 135
Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
G+VV+ GF+ + +V N LI ++ CG ++G
Sbjct: 136 GKVVRHGFVLNEYVKNALILFHANCG-------------------------------DLG 164
Query: 196 KAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIG 255
A E+FD+ + ++WS M GY K+G I A LF+ MP KD ++WN MI G K
Sbjct: 165 IASELFDDSAKAHKVAWSSMTSGY-AKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCK 223
Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
++ +A++LF+ E++V +W+ MI GY G PKEAL +F+EM G PDV++++ +S
Sbjct: 224 EMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLS 283
Query: 316 ACAQVGALDLGKWIHVFMKR-----SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
ACA +G L+ GK +H+++ S I + + ALIDMY KCGS+D A +F +
Sbjct: 284 ACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKD 343
Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
+++ ++N +I GL ++ E +++ F +M+ + +++ F+GV++ACSHSG EG +
Sbjct: 344 RDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKY 402
Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
F M+ IEP ++HY C+VD+L RAG+LE+A VESM ++PN +W TLL AC+ +
Sbjct: 403 FSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYG 462
Query: 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
NV L + E L+ ++ D+ G YVLLSNIYA G W+ ++RKM ++KK TG S+I
Sbjct: 463 NVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLI 522
Query: 551 EIDGN 555
E D +
Sbjct: 523 EEDDD 527
>sp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g05240
OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2
Length = 565
Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust.
Identities = 209/556 (37%), Positives = 318/556 (57%), Gaps = 19/556 (3%)
Query: 14 PLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERLFNQI 72
P++S L+ ++ + Q+ + + +I LS+L+ T P T+N+ A +F I
Sbjct: 8 PILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESI 67
Query: 73 YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
P+ Y+ N+MIRGY+ S NP KAL FY M RKG D +T+P+VLKAC L + G+
Sbjct: 68 DCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGS 127
Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
+HG VVK GF +++V L+ MY CG + VFE ++V+W ++ GFV
Sbjct: 128 CVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNN 187
Query: 193 EMGKAREVFDEMPQKDAI--SWSIMIDGYRK--KKGDISSARIL------------FEHM 236
A E F EM Q + + + +IM+D + DI + + F+
Sbjct: 188 RFSDAIEAFREM-QSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSK 246
Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
++I S+ID YAK GDL A+ LF+ MPER + SW+ +I GY+Q+G+ +EAL +F
Sbjct: 247 VGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFL 306
Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
+ML G+ PD ++ + I A G LG+ IH ++ ++ D + AL++MY K G
Sbjct: 307 DMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTG 366
Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKDDLIFLGVL 415
+ A++ F + KK+ I++ V+I GL +G G EAL F +M+ +G D + +LGVL
Sbjct: 367 DAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVL 426
Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
ACSH GL EG R F M+ G+EP +EHY C+VD+LSRAG E+A +V++MP+KPN
Sbjct: 427 YACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPN 486
Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535
+ +WG LL C H+N+ L + + + E + G+YVLLSNIYA AG W IR+
Sbjct: 487 VNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLIRES 546
Query: 536 MRKRKIKKETGRSVIE 551
M+ +++ K G S +E
Sbjct: 547 MKSKRVDKVLGHSSVE 562
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/561 (36%), Positives = 321/561 (57%), Gaps = 37/561 (6%)
Query: 16 VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
+SLL K + QI + T+ + +L++ + + A RL +P
Sbjct: 9 LSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEP 68
Query: 76 NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV-DNYTYPFVLKACGVLMGLVEGTEI 134
+ +M NT++RGY++S P +++ +V M RKG + D++++ FV+KA L G ++
Sbjct: 69 DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 128
Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
H + +K G +FV LIGMY CG C E
Sbjct: 129 HCQALKHGLESHLFVGTTLIGMYGGCG-----------------------------CVEF 159
Query: 195 GKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKI 254
AR+VFDEM Q + ++W+ +I + D++ AR +F+ M +++ SWN M+ GY K
Sbjct: 160 --ARKVFDEMHQPNLVAWNAVITACFRGN-DVAGAREIFDKMLVRNHTSWNVMLAGYIKA 216
Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
G+L +A+++F+EMP R+ SWS MI G A +G+ E+ FRE+ G+ P+ +S+ G +
Sbjct: 217 GELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVL 276
Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN-V 373
SAC+Q G+ + GK +H F++++ + + V ALIDMY +CG++ AR +F M +K +
Sbjct: 277 SACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCI 336
Query: 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433
+S+ MIAGL M+G GEEA++ F +M G+ D + F+ +L ACSH+GL EG F
Sbjct: 337 VSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSE 396
Query: 434 MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT 493
MKR IEP++EHY C+VDL R+G+L++A + + MP+ P +W TLL AC +H N+
Sbjct: 397 MKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIE 456
Query: 494 LAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEID 553
LAE V + L EL ++ G VLLSN YA AG W+ IRK M ++IKK T S++E+
Sbjct: 457 LAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVG 516
Query: 554 GNIKEFVSGEI---FDVQSEE 571
+ +F +GE D+++ E
Sbjct: 517 KTMYKFTAGEKKKGIDIEAHE 537
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/599 (33%), Positives = 325/599 (54%), Gaps = 41/599 (6%)
Query: 13 NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
N ++ L K+ HI Q+ A + +I S L S +++N+ A +F+ I
Sbjct: 13 NTILEKLSFCKSLNHIKQLHAHILRT-VINHKLN-SFLFNLSVSSSSINLSYALNVFSSI 70
Query: 73 -YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
P + + N +R ++SS P+ + FY ++ G +D +++ +LKA + L EG
Sbjct: 71 PSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEG 130
Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
E+HG K+ LCD FV G + MY+ CG + AR+VF+ +D+V+WN ++ +
Sbjct: 131 MELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRF 190
Query: 192 GEMGKAREVFDEMPQKDA------------------------------ISWSIMIDGY-- 219
G + +A ++F+EM + I + +D +
Sbjct: 191 GLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLL 250
Query: 220 ------RKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVF 273
G + AR F M +++L +M+ GY+K G L AQ +F++ ++++
Sbjct: 251 TALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLV 310
Query: 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFM 333
W+ MI Y + P+EAL +F EM C G++PDV+S+ ISACA +G LD KW+H +
Sbjct: 311 CWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCI 370
Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
+ + ++ + ALI+MY KCG LD R +F M ++NV+S++ MI L M+G +AL
Sbjct: 371 HVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDAL 430
Query: 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453
FA+M+ E + +++ F+GVL CSHSGL EG +IF SM I PKLEHY C+VDL
Sbjct: 431 SLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDL 490
Query: 454 LSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLY 513
RA L +AL ++ESMP+ N+ +WG+L+ ACR H + L + + ++EL+ D G
Sbjct: 491 FGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGAL 550
Query: 514 VLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
VL+SNIYA WE IR++M ++ + KE G S I+ +G EF+ G+ QS E+
Sbjct: 551 VLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEI 609
>sp|P0C8Q5|PP336_ARATH Pentatricopeptide repeat-containing protein At4g22760
OS=Arabidopsis thaliana GN=PCMP-E6 PE=2 SV=1
Length = 578
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/556 (35%), Positives = 308/556 (55%), Gaps = 36/556 (6%)
Query: 30 QILAQLTTNDL-ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYT 88
Q+ AQL N EP + Q L + + +R+ +++ ++R +
Sbjct: 21 QVHAQLVVNRYNHLEPILVHQTLHFTKEFSRNIVTYVKRILKGFNGHDSFSWGCLVRFLS 80
Query: 89 QSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF 148
Q ++ + Y++M G+ ++ VL+ACG + +V+G IH + +K G V+
Sbjct: 81 QHRKFKETVDVYIDMHNSGIPPSSHAVTSVLRACGKMENMVDGKPIHAQALKNGLCGCVY 140
Query: 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKD 208
V GL+G+YS+ G++ A+ F+ K+ VSWN +L G++E GE+ +AR VFD++P+KD
Sbjct: 141 VQTGLVGLYSRLGYIELAKKAFDDIAEKNTVSWNSLLHGYLESGELDEARRVFDKIPEKD 200
Query: 209 AISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
A+SW+++I Y KKGD+ +A LF MP+K SWN +I GY ++ A+ F+ MP
Sbjct: 201 AVSWNLIISSY-AKKGDMGNACSLFSAMPLKSPASWNILIGGYVNCREMKLARTYFDAMP 259
Query: 269 ERNVFSWSIMIDGYA-------------------------------QHGNPKEALYLFRE 297
++N SW MI GY Q+G PK+AL LF +
Sbjct: 260 QKNGVSWITMISGYTKLGDVQSAEELFRLMSKKDKLVYDAMIACYTQNGKPKDALKLFAQ 319
Query: 298 MLCQG--VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
ML + ++PD I++ +SA +Q+G G W+ ++ I +D ++ T+LID+YMK
Sbjct: 320 MLERNSYIQPDEITLSSVVSANSQLGNTSFGTWVESYITEHGIKIDDLLSTSLIDLYMKG 379
Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
G +A ++F ++ KK+ +SY+ MI G G+NG EA F M + IP + + F G+L
Sbjct: 380 GDFAKAFKMFSNLNKKDTVSYSAMIMGCGINGMATEANSLFTAMIEKKIPPNVVTFTGLL 439
Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
A SHSGL EGY+ F SMK H +EP +HY +VD+L RAG LE+A +++SMPM+PN
Sbjct: 440 SAYSHSGLVQEGYKCFNSMKDH-NLEPSADHYGIMVDMLGRAGRLEEAYELIKSMPMQPN 498
Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535
+WG LLLA H NV E+ V+L+ D G L+ IY+ G W+ A +R
Sbjct: 499 AGVWGALLLASGLHNNVEFGEIACSHCVKLETDPTGYLSHLAMIYSSVGRWDDARTVRDS 558
Query: 536 MRKRKIKKETGRSVIE 551
++++K+ K G S +E
Sbjct: 559 IKEKKLCKTLGCSWVE 574
>sp|Q9FHR3|PP403_ARATH Putative pentatricopeptide repeat-containing protein At5g37570
OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1
Length = 550
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 200/538 (37%), Positives = 318/538 (59%), Gaps = 4/538 (0%)
Query: 15 LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
L +L ++ K+ H+ QI A++ L + L + +S +S ++ ++ + +F ++
Sbjct: 13 LETLFKLCKSEIHLNQIHARIIRKGLEQDQ-NLISIFISSSSSSSSSLSYSSSVFERVPS 71
Query: 75 PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL-VDNYTYPFVLKACGVLMGLVEGTE 133
P TY+ N +I+GY+ + +S + M R GL D YT+P V+K C + G+
Sbjct: 72 PGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVGSS 131
Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
+HG V+++GF DV V + Y KC + AR VF ++ VSW ++ +V+ GE
Sbjct: 132 VHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVAYVKSGE 191
Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAK 253
+ +A+ +FD MP+++ SW+ ++DG K GD+ +A+ LF+ MP +D+IS+ SMIDGYAK
Sbjct: 192 LEEAKSMFDLMPERNLGSWNALVDGL-VKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAK 250
Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313
GD+V+A+ LF E +V +WS +I GYAQ+G P EA +F EM + V+PD ++G
Sbjct: 251 GGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGL 310
Query: 314 ISACAQVGALDLGKWIHVFM-KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
+SAC+Q+G +L + + ++ +R V ALIDM KCG +D A ++F M +++
Sbjct: 311 MSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRD 370
Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
++SY M+ G+ ++G G EA++ F +M EGI D++ F +L C S L EG R F+
Sbjct: 371 LVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLRYFE 430
Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV 492
M++ I +HYSC+V+LLSR G+L++A +++SMP + + + WG+LL C H N
Sbjct: 431 LMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNT 490
Query: 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
+AEVV L EL+ G YVLLSNIYA W +R M + I K GRS I
Sbjct: 491 EIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKICGRSWI 548
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 363 bits (932), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 201/562 (35%), Positives = 313/562 (55%), Gaps = 49/562 (8%)
Query: 45 FTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMK 104
+T + ++ LT L D+A+ LF + + + N+M+ G+ Q ++AL ++ M
Sbjct: 87 YTWNSVVTGLTKLGFL--DEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMH 144
Query: 105 RKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG 164
++G +++ Y++ VL AC L + +G ++H + K FL DV++ + L+ MYSKCG++
Sbjct: 145 KEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVN 204
Query: 165 CARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVF----------DEMP--------- 205
A+ VF+ +++VSWN ++ F + G +A +VF DE+
Sbjct: 205 DAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACA 264
Query: 206 ---------------------QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
+ D I + +D Y K I AR +F+ MPI+++I+
Sbjct: 265 SLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMY-AKCSRIKEARFIFDSMPIRNVIAE 323
Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
SMI GYA AA+ +F +M ERNV SW+ +I GY Q+G +EAL LF + + V
Sbjct: 324 TSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVC 383
Query: 305 PDVISVMGAISACAQVGALDLGKWIHV------FMKRSRITMDMIVQTALIDMYMKCGSL 358
P S + ACA + L LG HV F +S D+ V +LIDMY+KCG +
Sbjct: 384 PTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCV 443
Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
+E +F M +++ +S+N MI G NG+G EAL+ F +M G D + +GVL AC
Sbjct: 444 EEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSAC 503
Query: 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
H+G EG F SM R G+ P +HY+C+VDLL RAG LE+A +++E MPM+P+ +
Sbjct: 504 GHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVI 563
Query: 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
WG+LL AC+ H+N+TL + V E L+E++ + G YVLLSN+YA+ G WE + +RK MRK
Sbjct: 564 WGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRK 623
Query: 539 RKIKKETGRSVIEIDGNIKEFV 560
+ K+ G S I+I G+ F+
Sbjct: 624 EGVTKQPGCSWIKIQGHDHVFM 645
Score = 179 bits (454), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 118/427 (27%), Positives = 204/427 (47%), Gaps = 76/427 (17%)
Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
+H V+K GF ++F+ N LI YSKCG + R VF+ +++ +WN V+ G + G
Sbjct: 42 VHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGF 101
Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRK---------------KKG----DISSARI--- 231
+ +A +F MP++D +W+ M+ G+ + K+G + S A +
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSA 161
Query: 232 ---------------LFEHMP-IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
L P + D+ ++++D Y+K G++ AQ++F+EM +RNV SW
Sbjct: 162 CSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSW 221
Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH-VFMK 334
+ +I + Q+G EAL +F+ ML V PD +++ ISACA + A+ +G+ +H +K
Sbjct: 222 NSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVK 281
Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYS--------------------------- 367
++ D+I+ A +DMY KC + EAR IF S
Sbjct: 282 NDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARL 341
Query: 368 ----MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS---- 419
M ++NV+S+N +IAG NG EEAL F ++ E + F +L AC+
Sbjct: 342 MFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAE 401
Query: 420 -HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
H G+ + + K G E + + L+D+ + G +E+ + M M+ +
Sbjct: 402 LHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM-MERDCVS 460
Query: 479 WGTLLLA 485
W +++
Sbjct: 461 WNAMIIG 467
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 115/258 (44%), Gaps = 42/258 (16%)
Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
+++H + +S + ++ +Q LID Y KCGSL++ R++F M ++N+ ++N ++ GL
Sbjct: 40 RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99
Query: 387 GF-------------------------------GEEALKCFAQMETEGIPKDDLIFLGVL 415
GF EEAL FA M EG ++ F VL
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159
Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHY---SCLVDLLSRAGELEQALNIVESMPM 472
ACS +G ++ + + P L S LVD+ S+ G + A + + M
Sbjct: 160 SACSGLNDMNKGVQVHSLIAK----SPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGD 215
Query: 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532
+ N+ W +L+ + A V + ++E + + + L S I A A + A+++
Sbjct: 216 R-NVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEV-TLASVISACASL--SAIKV 271
Query: 533 RKMMRKRKIKKETGRSVI 550
+ + R +K + R+ I
Sbjct: 272 GQEVHGRVVKNDKLRNDI 289
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 360 bits (924), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 185/532 (34%), Positives = 301/532 (56%), Gaps = 34/532 (6%)
Query: 14 PLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERLFNQI 72
P++S + +K+ T I Q A + L + F+ S+L+ + T+P + A + N+I
Sbjct: 41 PILSFTERAKSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRI 100
Query: 73 YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
PN + HN++IR Y SS P+ AL+ + M + D Y++ FVLKAC G EG
Sbjct: 101 GSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGR 160
Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
+IHG +K G + DVFV N L+ +Y + G+ EI
Sbjct: 161 QIHGLFIKSGLVTDVFVENTLVNVYGRSGYF----------EI----------------- 193
Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA 252
AR+V D MP +DA+SW+ ++ Y +K G + AR LF+ M +++ SWN MI GYA
Sbjct: 194 ----ARKVLDRMPVRDAVSWNSLLSAYLEK-GLVDEARALFDEMEERNVESWNFMISGYA 248
Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV-RPDVISVM 311
G + A+++F+ MP R+V SW+ M+ YA G E L +F +ML +PD +++
Sbjct: 249 AAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLV 308
Query: 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
+SACA +G+L G+W+HV++ + I ++ + TAL+DMY KCG +D+A +F + +K+
Sbjct: 309 SVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKR 368
Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
+V ++N +I+ L ++G G++AL+ F++M EG + + F+GVL AC+H G+ + ++F
Sbjct: 369 DVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGMLDQARKLF 428
Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN 491
+ M +EP +EHY C+VDLL R G++E+A +V +P L +LL AC+
Sbjct: 429 EMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPADEASILLESLLGACKRFGQ 488
Query: 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
+ AE + L+EL D Y +SN+YA G WE + R+ MR ++ +
Sbjct: 489 LEQAERIANRLLELNLRDSSGYAQMSNLYASDGRWEKVIDGRRNMRAERVNR 540
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 354 bits (908), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 188/513 (36%), Positives = 307/513 (59%), Gaps = 13/513 (2%)
Query: 62 MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
+D A +F+++ + N N ++ Y Q+S ++A + + + L+ N
Sbjct: 173 VDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWN--------- 223
Query: 122 CGVLMGLVEGTEI--HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
C +L G V+ +I + + DV N +I Y++ G + AR +F+ S ++D+
Sbjct: 224 C-LLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVF 282
Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239
+W ++ G+++ + +ARE+FD+MP+++ +SW+ M+ GY + + + A+ LF+ MP +
Sbjct: 283 TWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGE-RMEMAKELFDVMPCR 341
Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
++ +WN+MI GYA+ G + A+ LF++MP+R+ SW+ MI GY+Q G+ EAL LF +M
Sbjct: 342 NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQME 401
Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
+G R + S A+S CA V AL+LGK +H + + V AL+ MY KCGS++
Sbjct: 402 REGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIE 461
Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
EA +F M K+++S+N MIAG +GFGE AL+ F M+ EG+ DD + VL ACS
Sbjct: 462 EANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACS 521
Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
H+GL +G + F +M + G+ P +HY+C+VDLL RAG LE A N++++MP +P+ A+W
Sbjct: 522 HTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIW 581
Query: 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539
GTLL A R H N LAE + + ++ ++ G+YVLLSN+YA +G W ++R MR +
Sbjct: 582 GTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDK 641
Query: 540 KIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
+KK G S IEI F G+ F + +E+
Sbjct: 642 GVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEI 674
Score = 162 bits (410), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 137/518 (26%), Positives = 248/518 (47%), Gaps = 37/518 (7%)
Query: 5 AAAKF-SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMD 63
AA F SLK + +Q S+T + L + +D+ +S + T +
Sbjct: 33 GAANFHSLKRATQTQIQKSQT-----KPLLKCGDSDIKEWNVAISSYM------RTGRCN 81
Query: 64 QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
+A R+F ++ + ++ +N MI GY ++ + A + M + L+ N
Sbjct: 82 EALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNV---------- 131
Query: 124 VLMGLVEGTEIHG--EVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
++ G V + E+ ++ DV N ++ Y++ G + ARSVF+ K+ VSW
Sbjct: 132 MIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSW 191
Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
N +L +V+ +M +A +F +SW+ ++ G+ KKK I AR F+ M ++D+
Sbjct: 192 NALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKK-KIVEARQFFDSMNVRDV 250
Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
+SWN++I GYA+ G + A+QLF+E P ++VF+W+ M+ GY Q+ +EA LF +M
Sbjct: 251 VSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKM--- 307
Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
+ +S ++ Q +++ K + M ++ +I Y +CG + EA
Sbjct: 308 -PERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVS----TWNTMITGYAQCGKISEA 362
Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
+ +F M K++ +S+ MIAG +G EAL+ F QME EG + F L C+
Sbjct: 363 KNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADV 422
Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
G ++ + + G E + L+ + + G +E+A ++ + M K ++ W T
Sbjct: 423 VALELGKQLHGRLVKG-GYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGK-DIVSWNT 480
Query: 482 LLLACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLS 517
++ H +A E + LK DD + +LS
Sbjct: 481 MIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLS 518
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 61 NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
++++A LF ++ + NTMI GY++ + AL F+ +MKR+GL D+ T VL
Sbjct: 459 SIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLS 518
Query: 121 ACGVLMGLVE 130
AC GLV+
Sbjct: 519 ACS-HTGLVD 527
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 348 bits (892), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 214/599 (35%), Positives = 323/599 (53%), Gaps = 50/599 (8%)
Query: 6 AAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL----- 60
A + L+ + LL+ + + QI AQ+ LL S+ PN L
Sbjct: 31 ARRGDLERDFLFLLKKCISVNQLRQIQAQM--------------LLHSVEKPNFLIPKAV 76
Query: 61 ---NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKA-LSFYVNMKRKGLLVDNYTYP 116
+ + + LF+ +PN Y N MIRG T + N +A LS Y MK GL D +TY
Sbjct: 77 ELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYN 136
Query: 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK 176
FV AC L + G +H + K+G DV + + LI MY+KCG +G AR +F+ +
Sbjct: 137 FVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITER 196
Query: 177 DLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARIL 232
D VSWN ++ G+ E G A ++F +M ++ D + M+ G GD+ + R+L
Sbjct: 197 DTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSML-GACSHLGDLRTGRLL 255
Query: 233 FEHMPIKDLISWNS-----MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN 287
E M I I ++ +I Y K GDL +A+++FN+M +++ +W+ MI Y+Q+G
Sbjct: 256 -EEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGK 314
Query: 288 PKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA 347
EA LF EM GV PD ++ +SAC VGAL+LGK I + ++ V T
Sbjct: 315 SSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATG 374
Query: 348 LIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407
L+DMY KCG ++EA R+F +M KN ++N MI G +EAL F +M +P
Sbjct: 375 LVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVPPS 431
Query: 408 DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467
D+ F+GVL AC H+GL +G R F M G+ PK+EHY+ ++DLLSRAG L++A +
Sbjct: 432 DITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFM 491
Query: 468 ESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK-ADDCGLYVLLSNIYADAGMW 526
E P KP+ + +L AC ++V + E + L+E+K A + G YV+ SN+ AD MW
Sbjct: 492 ERFPGKPDEIMLAAILGACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLADMKMW 551
Query: 527 EHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV------------SGEIFDVQSEELE 573
+ + ++R +MR R + K G S IEI+G + EF+ SG +FD+ EE++
Sbjct: 552 DESAKMRALMRDRGVVKTPGCSWIEIEGELMEFLAGSDYLQCGREDSGSLFDLLVEEMK 610
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 346 bits (888), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 190/535 (35%), Positives = 309/535 (57%), Gaps = 14/535 (2%)
Query: 62 MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
+D A ++F+++ + + N++I GY + +K LS +V M G+ +D T V
Sbjct: 246 VDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAG 305
Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
C + G +H VK F + N L+ MYSKCG + A++VF + +VS+
Sbjct: 306 CADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSY 365
Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMP 237
++ G+ G G+A ++F+EM ++ D + + +++ + + R+ H
Sbjct: 366 TSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRV---HEW 422
Query: 238 IK------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
IK D+ N+++D YAK G + A+ +F+EM +++ SW+ +I GY+++ EA
Sbjct: 423 IKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEA 482
Query: 292 LYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
L LF +L + PD +V + ACA + A D G+ IH ++ R+ D V +L+D
Sbjct: 483 LSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVD 542
Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
MY KCG+L A +F + K+++S+ VMIAG GM+GFG+EA+ F QM GI D++
Sbjct: 543 MYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEIS 602
Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
F+ +L ACSHSGL EG+R F M+ C IEP +EHY+C+VD+L+R G+L +A +E+M
Sbjct: 603 FVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENM 662
Query: 471 PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530
P+ P+ +WG LL CR H +V LAE V E + EL+ ++ G YVL++NIYA+A WE
Sbjct: 663 PIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVK 722
Query: 531 RIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
R+RK + +R ++K G S IEI G + FV+G+ + ++E +E ++ IE
Sbjct: 723 RLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIE 777
Score = 193 bits (491), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 133/442 (30%), Positives = 225/442 (50%), Gaps = 14/442 (3%)
Query: 52 MSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVD 111
+SL N ++ +A R+F+++ N ++ +S + ++ + M G+ +D
Sbjct: 135 LSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMD 194
Query: 112 NYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE 171
+YT+ V K+ L + G ++HG ++K GF V N L+ Y K + AR VF+
Sbjct: 195 SYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFD 254
Query: 172 GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDIS 227
+D++SWN ++ G+V G K VF +M + D + + G + IS
Sbjct: 255 EMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRL-IS 313
Query: 228 SARILFEHMPIKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
R + + +K S N+++D Y+K GDL +A+ +F EM +R+V S++ MI GY
Sbjct: 314 LGRAV-HSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGY 372
Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
A+ G EA+ LF EM +G+ PDV +V ++ CA+ LD GK +H ++K + + D+
Sbjct: 373 AREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDI 432
Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFA-QMET 401
V AL+DMY KCGS+ EA +F M K++IS+N +I G N + EAL F +E
Sbjct: 433 FVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEE 492
Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
+ D+ VL AC+ +G I + R+ G + LVD+ ++ G L
Sbjct: 493 KRFSPDERTVACVLPACASLSAFDKGREIHGYIMRN-GYFSDRHVANSLVDMYAKCGALL 551
Query: 462 QALNIVESMPMKPNLALWGTLL 483
A + + + K +L W ++
Sbjct: 552 LAHMLFDDIASK-DLVSWTVMI 572
Score = 166 bits (420), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 111/412 (26%), Positives = 210/412 (50%), Gaps = 15/412 (3%)
Query: 81 NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
NT +R + +S N + A+ + +D T VL+ C L +G E+ +
Sbjct: 65 NTQLRRFCESGNLENAVKLLCVSGKWD--IDPRTLCSVLQLCADSKSLKDGKEVDNFIRG 122
Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
GF+ D + + L MY+ CG + A VF+ +I+ + WN+++ + G+ + +
Sbjct: 123 NGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGL 182
Query: 201 FDEM----PQKDAISWSIMIDGYRKKK----GDISSARILFEHMPIKDLISWNSMIDGYA 252
F +M + D+ ++S + + + G+ IL ++ + NS++ Y
Sbjct: 183 FKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVG-NSLVAFYL 241
Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
K + +A+++F+EM ER+V SW+ +I+GY +G ++ L +F +ML G+ D+ +++
Sbjct: 242 KNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVS 301
Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
+ CA + LG+ +H ++ + + L+DMY KCG LD A+ +F M+ ++
Sbjct: 302 VFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRS 361
Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
V+SY MIAG G EA+K F +ME EGI D VL C+ L EG R+ +
Sbjct: 362 VVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHE 421
Query: 433 SMKRH-CGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
+K + G + + + L+D+ ++ G +++A + M +K ++ W T++
Sbjct: 422 WIKENDLGFDIFVSN--ALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTII 470
Score = 142 bits (357), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 158/330 (47%), Gaps = 35/330 (10%)
Query: 61 NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
++D A+ +F ++ + + +MI GY + +A+ + M+ +G+ D YT VL
Sbjct: 346 DLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLN 405
Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
C L EG +H + + D+FV N L+ MY+KCG M A VF +KD++S
Sbjct: 406 CCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIIS 465
Query: 181 WNLVLRGFVECGEMGKAREVFDEM-------PQKDAISWSI-------------MIDGYR 220
WN ++ G+ + +A +F+ + P + ++ + I GY
Sbjct: 466 WNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYI 525
Query: 221 KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMID 280
+ G S + NS++D YAK G L+ A LF+++ +++ SW++MI
Sbjct: 526 MRNGYFSDRHVA------------NSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIA 573
Query: 281 GYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM 340
GY HG KEA+ LF +M G+ D IS + + AC+ G +D G W + R +
Sbjct: 574 GYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEG-WRFFNIMRHECKI 632
Query: 341 DMIVQ--TALIDMYMKCGSLDEARRIFYSM 368
+ V+ ++DM + G L +A R +M
Sbjct: 633 EPTVEHYACIVDMLARTGDLIKAYRFIENM 662
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 345 bits (885), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 164/360 (45%), Positives = 253/360 (70%), Gaps = 3/360 (0%)
Query: 215 MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
++D Y K GD+ SA+ +F+ MP + L+S +MI YAK G++ AA+ LF+ M ER++ S
Sbjct: 167 LVDVY-AKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVS 225
Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHVFM 333
W++MIDGYAQHG P +AL LF+++L +G +PD I+V+ A+SAC+Q+GAL+ G+WIHVF+
Sbjct: 226 WNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFV 285
Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
K SRI +++ V T LIDMY KCGSL+EA +F +K+++++N MIAG M+G+ ++AL
Sbjct: 286 KSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDAL 345
Query: 394 KCFAQME-TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
+ F +M+ G+ D+ F+G L AC+H+GL EG RIF+SM + GI+PK+EHY CLV
Sbjct: 346 RLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVS 405
Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
LL RAG+L++A +++M M + LW ++L +C+ H + L + + E L+ L + G+
Sbjct: 406 LLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGI 465
Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
YVLLSNIYA G +E ++R +M+++ I KE G S IEI+ + EF +G+ +S+E+
Sbjct: 466 YVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEI 525
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/376 (27%), Positives = 180/376 (47%), Gaps = 51/376 (13%)
Query: 1 MKTLAAAKFSLKNP--LVSLLQISKTTTHILQILAQLTTNDLITEP-FTLSQLLMSLTSP 57
+ T A A+F L P L L+ S++ +LQI A + ++L+ P + + L +
Sbjct: 16 LSTTATARFRLPPPEKLAVLIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYA 75
Query: 58 NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF 117
+ + + LF+Q P+ ++ I + + +A YV + + + +T+
Sbjct: 76 SHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSS 135
Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
+LK+C G + IH V+K G D +V GL+ +Y+K G + A+ VF+ +
Sbjct: 136 LLKSCSTKSGKL----IHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERS 191
Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM- 236
LVS ++ + + G + AR +FD M ++D +SW++MIDGY + G + A +LF+ +
Sbjct: 192 LVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGY-AQHGFPNDALMLFQKLL 250
Query: 237 ----PIKDLIS------------------W-----------------NSMIDGYAKIGDL 257
P D I+ W +ID Y+K G L
Sbjct: 251 AEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSL 310
Query: 258 VAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML-CQGVRPDVISVMGAISA 316
A +FN+ P +++ +W+ MI GYA HG ++AL LF EM G++P I+ +G + A
Sbjct: 311 EEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQA 370
Query: 317 CAQVGALDLGKWIHVF 332
CA G ++ G I +F
Sbjct: 371 CAHAGLVNEG--IRIF 384
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 344 bits (883), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 187/526 (35%), Positives = 301/526 (57%), Gaps = 25/526 (4%)
Query: 62 MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL-VDNYTYPFVLK 120
++ A ++F+++ + +T + NTMI GY ++ +++ + ++ + +D T +L
Sbjct: 170 VEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILP 229
Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
A L L G +IH K G +V+ G I +YSKCG + ++F D+V+
Sbjct: 230 AVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVA 289
Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI-- 238
+N ++ G+ GE + +F E+ M+ G R + + S + H+ +
Sbjct: 290 YNAMIHGYTSNGETELSLSLFKEL----------MLSGARLRSSTLVSLVPVSGHLMLIY 339
Query: 239 --------KDLISWNSMIDG----YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
+ +S S+ Y+K+ ++ +A++LF+E PE+++ SW+ MI GY Q+G
Sbjct: 340 AIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNG 399
Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
++A+ LFREM P+ +++ +SACAQ+GAL LGKW+H ++ + + V T
Sbjct: 400 LTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVST 459
Query: 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK 406
ALI MY KCGS+ EARR+F MTKKN +++N MI+G G++G G+EAL F +M GI
Sbjct: 460 ALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITP 519
Query: 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466
+ FL VL ACSH+GL EG IF SM G EP ++HY+C+VD+L RAG L++AL
Sbjct: 520 TPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQF 579
Query: 467 VESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMW 526
+E+M ++P ++W TLL ACR H++ LA V E L EL D+ G +VLLSNI++ +
Sbjct: 580 IEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNY 639
Query: 527 EHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
A +R+ +KRK+ K G ++IEI F SG+ Q +E+
Sbjct: 640 PQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEI 685
Score = 142 bits (358), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 111/485 (22%), Positives = 221/485 (45%), Gaps = 24/485 (4%)
Query: 12 KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
KN + + S + +H+ Q AQ+ + + L++L L+ + A +F
Sbjct: 20 KNTYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYY--ARDIFLS 77
Query: 72 IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNY-TYPFVLKACGVLMGLVE 130
+ +P+ ++ N ++RG++ + +P +LS + ++++ L N TY F + A
Sbjct: 78 VQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRA 137
Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
G IHG+ V G ++ + + ++ MY K + AR VF+ KD + WN ++ G+ +
Sbjct: 138 GRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197
Query: 191 CGEMGKAREVFDEMPQKDA--ISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS----- 243
++ +VF ++ + + + ++D ++ R+ M I L +
Sbjct: 198 NEMYVESIQVFRDLINESCTRLDTTTLLD-ILPAVAELQELRL---GMQIHSLATKTGCY 253
Query: 244 -----WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
I Y+K G + LF E + ++ +++ MI GY +G + +L LF+E+
Sbjct: 254 SHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKEL 313
Query: 299 LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
+ G R + +S G L L IH + +S V TAL +Y K +
Sbjct: 314 MLSGAR---LRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEI 370
Query: 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418
+ AR++F +K++ S+N MI+G NG E+A+ F +M+ + + +L AC
Sbjct: 371 ESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSAC 430
Query: 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
+ G + G + + R E + + L+ + ++ G + +A + + M K N
Sbjct: 431 AQLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLM-TKKNEVT 488
Query: 479 WGTLL 483
W T++
Sbjct: 489 WNTMI 493
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 342 bits (876), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 184/531 (34%), Positives = 288/531 (54%), Gaps = 43/531 (8%)
Query: 75 PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
P+ M+N M++ + K L+ + ++ +GL DN+T P VLK+ G L ++EG ++
Sbjct: 9 PSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKV 68
Query: 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEM 194
HG VK G D +V N L+GMY+ G + VF+ +D+VSWN ++ +V G
Sbjct: 69 HGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRF 128
Query: 195 GKAREVFDEMPQKDAISW---------------------------------------SIM 215
A VF M Q+ + + + +
Sbjct: 129 EDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIGNAL 188
Query: 216 IDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
+D + K G + AR +F+ M K++ W SM+ GY G + A+ LF P ++V W
Sbjct: 189 VDMF-CKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLW 247
Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
+ M++GY Q EAL LFR M G+RPD ++ ++ CAQ GAL+ GKWIH ++
Sbjct: 248 TAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINE 307
Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
+R+T+D +V TAL+DMY KCG ++ A +FY + +++ S+ +I GL MNG AL
Sbjct: 308 NRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDL 367
Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
+ +ME G+ D + F+ VL AC+H G EG +IF SM ++PK EH SCL+DLL
Sbjct: 368 YYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLC 427
Query: 456 RAGELEQALNIVESMPMKPN---LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
RAG L++A +++ M + + + ++ +LL A RN+ NV +AE V E L +++ D
Sbjct: 428 RAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSA 487
Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
+ LL+++YA A WE +R+ M+ I+K G S IEIDG EF+ G+
Sbjct: 488 HTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVGHEFIVGD 538
Score = 122 bits (306), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 107/441 (24%), Positives = 184/441 (41%), Gaps = 74/441 (16%)
Query: 1 MKTLAAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTS---- 56
M L + N ++ L K+ T +L + +L L + FTL +L S+
Sbjct: 3 MSLLQTPSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKV 62
Query: 57 ---------------------PNTL--------NMDQAERLFNQIYQPNTYMHNTMIRGY 87
N+L ++ ++F+++ Q + N +I Y
Sbjct: 63 IEGEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSY 122
Query: 88 TQSSNPQKALSFYVNMKRKG-LLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCD 146
+ + A+ + M ++ L D T L AC L L G I+ VV F
Sbjct: 123 VGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTE-FEMS 181
Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
V + N L+ M+ KCG + AR+VF+ K++ W ++ G+V G + +AR +F+ P
Sbjct: 182 VRIGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPV 241
Query: 207 KDAISWSIMIDGYRK----------------------------------KKGDISSARIL 232
KD + W+ M++GY + + G + + +
Sbjct: 242 KDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWI 301
Query: 233 F----EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNP 288
E+ D + +++D YAK G + A ++F E+ ER+ SW+ +I G A +G
Sbjct: 302 HGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMS 361
Query: 289 KEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI-HVFMKRSRITMDMIVQTA 347
AL L+ EM GVR D I+ + ++AC G + G+ I H +R + +
Sbjct: 362 GRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSC 421
Query: 348 LIDMYMKCGSLDEARRIFYSM 368
LID+ + G LDEA + M
Sbjct: 422 LIDLLCRAGLLDEAEELIDKM 442
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 111/247 (44%), Gaps = 14/247 (5%)
Query: 58 NTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF 117
+T +D+A LF + + + M+ GY Q + +AL + M+ G+ DN+
Sbjct: 225 STGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVS 284
Query: 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
+L C L +G IHG + + D V L+ MY+KCG + A VF + +D
Sbjct: 285 LLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERD 344
Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILF 233
SW ++ G G G+A +++ EM + DAI++ ++ G ++ R +F
Sbjct: 345 TASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTAC-NHGGFVAEGRKIF 403
Query: 234 EHMPIKDLISWNS-----MIDGYAKIGDLVAAQQLFNEM----PERNVFSWSIMIDGYAQ 284
M + + S +ID + G L A++L ++M E V + ++
Sbjct: 404 HSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARN 463
Query: 285 HGNPKEA 291
+GN K A
Sbjct: 464 YGNVKIA 470
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 340 bits (872), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 190/586 (32%), Positives = 317/586 (54%), Gaps = 24/586 (4%)
Query: 17 SLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAER---LFNQIY 73
+L+ ++ T H+ QI L + L + F ++ LL TL Q + LF+
Sbjct: 18 TLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLL-----KRTLFFRQTKYSYLLFSHTQ 72
Query: 74 QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
PN +++N++I G+ + + L ++++++ GL + +T+P VLKAC G +
Sbjct: 73 FPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGID 132
Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
+H VVK GF DV + L+ +YS G + A +F+ + +V+W + G+ G
Sbjct: 133 LHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGR 192
Query: 194 MGKAREVFD---EMPQKDAISWSIMIDGYRKKKGDISSARILFEHMP----IKDLISWNS 246
+A ++F EM K + + + GD+ S + ++M K+ +
Sbjct: 193 HREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTT 252
Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
+++ YAK G + A+ +F+ M E+++ +WS MI GYA + PKE + LF +ML + ++PD
Sbjct: 253 LVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPD 312
Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
S++G +S+CA +GALDLG+W + R ++ + ALIDMY KCG++ +F
Sbjct: 313 QFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFK 372
Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
M +K+++ N I+GL NG + + F Q E GI D FLG+L C H+GL +
Sbjct: 373 EMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQD 432
Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
G R F ++ ++ +EHY C+VDL RAG L+ A ++ MPM+PN +WG LL C
Sbjct: 433 GLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGC 492
Query: 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546
R ++ LAE V++ L+ L+ + G YV LSNIY+ G W+ A +R MM K+ +KK G
Sbjct: 493 RLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPG 552
Query: 547 RSVIEIDGNIKEFVSGEIFDVQSEEL---------ELVIQSFVKTT 583
S IE++G + EF++ + S+++ E+ + FV TT
Sbjct: 553 YSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTT 598
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 340 bits (872), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 187/544 (34%), Positives = 311/544 (57%), Gaps = 56/544 (10%)
Query: 23 KTTTHILQILAQLTTNDLITEPFTLSQLLM--SLTSPNTLNMDQAERLFNQIYQPNTYMH 80
+T + QI A + + + +++L + + + ++D A ++FNQ+ Q N +
Sbjct: 34 RTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSW 93
Query: 81 NTMIRGYTQSSNPQKALS---FYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGE 137
NT+IRG+++S + ++ FY M + + + +T+P VLKAC + EG +IHG
Sbjct: 94 NTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGL 153
Query: 138 VVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKA 197
+K GF D FV++ L+ MY V CG M A
Sbjct: 154 ALKYGFGGDEFVMSNLVRMY-------------------------------VMCGFMKDA 182
Query: 198 REVF-DEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGD 256
R +F + +KD + +M D RK+ G+I + WN MIDGY ++GD
Sbjct: 183 RVLFYKNIIEKDMV---VMTD-RRKRDGEI---------------VLWNVMIDGYMRLGD 223
Query: 257 LVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISA 316
AA+ LF++M +R+V SW+ MI GY+ +G K+A+ +FREM +RP+ ++++ + A
Sbjct: 224 CKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPA 283
Query: 317 CAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISY 376
+++G+L+LG+W+H++ + S I +D ++ +ALIDMY KCG +++A +F + ++NVI++
Sbjct: 284 ISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITW 343
Query: 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436
+ MI G ++G +A+ CF +M G+ D+ ++ +L ACSH GL EG R F M
Sbjct: 344 SAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVS 403
Query: 437 HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAE 496
G+EP++EHY C+VDLL R+G L++A + +MP+KP+ +W LL ACR NV + +
Sbjct: 404 VDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGK 463
Query: 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNI 556
V L+++ D G YV LSN+YA G W +R M+++ I+K+ G S+I+IDG +
Sbjct: 464 RVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVL 523
Query: 557 KEFV 560
EFV
Sbjct: 524 HEFV 527
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 340 bits (872), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 191/573 (33%), Positives = 314/573 (54%), Gaps = 38/573 (6%)
Query: 6 AAKFSLKNP-LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQ 64
+A SL P L +++ T + LA + L + ++Q + + TS L D
Sbjct: 21 SASLSLAPPNLKKIIKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSFKRL--DL 78
Query: 65 AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
A Q+ +PN +++N + +G+ S+P ++L YV M R + +YTY ++KA
Sbjct: 79 AVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSF 138
Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
E + H + K GF V + LI YS G
Sbjct: 139 ASRFGESLQAH--IWKFGFGFHVKIQTTLIDFYSATG----------------------- 173
Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
+ +AR+VFDEMP++D I+W+ M+ YR+ D+ SA L M K+ +
Sbjct: 174 --------RIREARKVFDEMPERDDIAWTTMVSAYRRVL-DMDSANSLANQMSEKNEATS 224
Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
N +I+GY +G+L A+ LFN+MP +++ SW+ MI GY+Q+ +EA+ +F +M+ +G+
Sbjct: 225 NCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGII 284
Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
PD +++ ISACA +G L++GK +H++ ++ +D+ + +AL+DMY KCGSL+ A +
Sbjct: 285 PDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLV 344
Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
F+++ KKN+ +N +I GL +GF +EALK FA+ME E + + + F+ V AC+H+GL
Sbjct: 345 FFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLV 404
Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
EG RI++SM I +EHY +V L S+AG + +AL ++ +M +PN +WG LL
Sbjct: 405 DEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLD 464
Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
CR H+N+ +AE+ L+ L+ + G Y LL ++YA+ W IR MR+ I+K
Sbjct: 465 GCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKI 524
Query: 545 -TGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
G S I ID F + + S+E+ L++
Sbjct: 525 CPGTSSIRIDKRDHLFAAADKSHSASDEVCLLL 557
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 335 bits (858), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 179/491 (36%), Positives = 284/491 (57%), Gaps = 9/491 (1%)
Query: 74 QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
Q + N +I +S + AL + M+ K + N + K +M E +
Sbjct: 58 QDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMM---EAHQ 114
Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
+ E+ + D F N ++ Y + + A+S F+ KD SWN ++ G+ GE
Sbjct: 115 LFDEIPEP----DTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGE 170
Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAK 253
M KARE+F M +K+ +SW+ MI GY + GD+ A F+ P++ +++W +MI GY K
Sbjct: 171 MEKARELFYSMMEKNEVSWNAMISGY-IECGDLEKASHFFKVAPVRGVVAWTAMITGYMK 229
Query: 254 IGDLVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
+ A+ +F +M +N+ +W+ MI GY ++ P++ L LFR ML +G+RP+ +
Sbjct: 230 AKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSS 289
Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
A+ C+++ AL LG+ IH + +S + D+ T+LI MY KCG L +A ++F M KK+
Sbjct: 290 ALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKD 349
Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
V+++N MI+G +G ++AL F +M I D + F+ VL+AC+H+GL G F+
Sbjct: 350 VVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFE 409
Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV 492
SM R +EP+ +HY+C+VDLL RAG+LE+AL ++ SMP +P+ A++GTLL ACR H+NV
Sbjct: 410 SMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNV 469
Query: 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
LAE E L++L + + YV L+NIYA WE R+RK M++ + K G S IEI
Sbjct: 470 ELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEI 529
Query: 553 DGNIKEFVSGE 563
+ F S +
Sbjct: 530 RNKVHHFRSSD 540
Score = 122 bits (306), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 172/370 (46%), Gaps = 40/370 (10%)
Query: 18 LLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNT 77
L+ ISK + +++ QL D I EP T S +M +N ++A+ F+++ +
Sbjct: 99 LIGISKDPSRMMEA-HQLF--DEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDA 155
Query: 78 YMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGE 137
NTMI GY + +KA + +M K + N ++ CG L E
Sbjct: 156 ASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIE-CGDL-------EKASH 207
Query: 138 VVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI-KDLVSWNLVLRGFVECGEMGK 196
K+ + V +I Y K + A ++F+ + K+LV+WN ++ G+VE
Sbjct: 208 FFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPED 267
Query: 197 AREVFDEMPQKDAISWSIMIDGYRKKKGDISSA-----------------RILFEHMPIK 239
++F M + +G R +SSA +I+ +
Sbjct: 268 GLKLFRAM----------LEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCN 317
Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
D+ + S+I Y K G+L A +LF M +++V +W+ MI GYAQHGN +AL LFREM+
Sbjct: 318 DVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMI 377
Query: 300 CQGVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358
+RPD I+ + + AC G +++G + ++ ++ T ++D+ + G L
Sbjct: 378 DNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKL 437
Query: 359 DEARRIFYSM 368
+EA ++ SM
Sbjct: 438 EEALKLIRSM 447
>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840
OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
Length = 665
Score = 333 bits (853), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 187/574 (32%), Positives = 313/574 (54%), Gaps = 35/574 (6%)
Query: 15 LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL--NMDQAERLFNQI 72
+SL+ K T + + AQ+ +++ S++ L S ++L + D + +F
Sbjct: 32 FISLIHACKDTASLRHVHAQILRRGVLS-----SRVAAQLVSCSSLLKSPDYSLSIFRNS 86
Query: 73 YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
+ N ++ N +IRG T+++ + ++ ++ M R G+ D T+PFVLK+ L G
Sbjct: 87 EERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGR 146
Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
+H +K CD FV L+ MY+K G + A VFE S
Sbjct: 147 ALHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESP------------------ 188
Query: 193 EMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA 252
D + ++ + W+++I+GY + K D+ A LF MP ++ SW+++I GY
Sbjct: 189 ---------DRIKKESILIWNVLINGYCRAK-DMHMATTLFRSMPERNSGSWSTLIKGYV 238
Query: 253 KIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312
G+L A+QLF MPE+NV SW+ +I+G++Q G+ + A+ + EML +G++P+ ++
Sbjct: 239 DSGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAA 298
Query: 313 AISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372
+SAC++ GAL G IH ++ + I +D + TAL+DMY KCG LD A +F +M K+
Sbjct: 299 VLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNMNHKD 358
Query: 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432
++S+ MI G ++G +A++CF QM G D+++FL VL AC +S G F
Sbjct: 359 ILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLGLNFFD 418
Query: 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNV 492
SM+ IEP L+HY +VDLL RAG+L +A +VE+MP+ P+L W L AC+ H+
Sbjct: 419 SMRLDYAIEPTLKHYVLVVDLLGRAGKLNEAHELVENMPINPDLTTWAALYRACKAHKGY 478
Query: 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEI 552
AE V + L+EL + CG Y+ L +A G + + R ++KR ++ G S IE+
Sbjct: 479 RRAESVSQNLLELDPELCGSYIFLDKTHASKGNIQDVEKRRLSLQKRIKERSLGWSYIEL 538
Query: 553 DGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586
DG + +F +G+ ++E+ L + + I++
Sbjct: 539 DGQLNKFSAGDYSHKLTQEIGLKLDEIISLAIQK 572
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 329 bits (844), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 174/530 (32%), Positives = 290/530 (54%), Gaps = 36/530 (6%)
Query: 61 NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
++ A ++F++I + N + N MIR Y + + + + M + D+YT+P VLK
Sbjct: 89 DVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLK 148
Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
AC +V G +IHG K+G +FV NGL+ MY KCG +
Sbjct: 149 ACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLS---------------- 192
Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK- 239
+AR V DEM ++D +SW+ ++ GY + + + + E +K
Sbjct: 193 ---------------EARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKI 237
Query: 240 --DLISWNSMIDGYAKIG--DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
D + S++ + +++ + +F +M ++++ SW++MI Y ++ P EA+ L+
Sbjct: 238 SHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELY 297
Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355
M G PD +S+ + AC AL LGK IH +++R ++ +++++ ALIDMY KC
Sbjct: 298 SRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKC 357
Query: 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415
G L++AR +F +M ++V+S+ MI+ G +G G +A+ F++++ G+ D + F+ L
Sbjct: 358 GCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTL 417
Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
ACSH+GL EG F+ M H I P+LEH +C+VDLL RAG++++A ++ M M+PN
Sbjct: 418 AACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPN 477
Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535
+WG LL ACR H + + + + L +L + G YVLLSNIYA AG WE IR +
Sbjct: 478 ERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNI 537
Query: 536 MRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
M+ + +KK G S +E++ I F+ G+ QS+E+ + VK E
Sbjct: 538 MKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKE 587
Score = 112 bits (280), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 171/352 (48%), Gaps = 17/352 (4%)
Query: 199 EVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM----IDGYAKI 254
E+ + PQ+ ++D Y DI + R + + ++DL +S+ + YA +
Sbjct: 32 ELDQKSPQETVFLLGQVLDTY----PDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASL 87
Query: 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314
D+ +A+++F+E+PERNV ++MI Y +G E + +F M VRPD + +
Sbjct: 88 KDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVL 147
Query: 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374
AC+ G + +G+ IH + ++ + V L+ MY KCG L EAR + M++++V+
Sbjct: 148 KACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVV 207
Query: 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434
S+N ++ G N ++AL+ +ME+ I D +L A S++ TE + M
Sbjct: 208 SWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT--TTENVMYVKDM 265
Query: 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP---MKPNLALWGTLLLACRNHQN 491
G + L ++ ++ + + +A+ + M +P+ ++L AC +
Sbjct: 266 FFKMG-KKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSA 324
Query: 492 VTLAEVVVEGLVELKA--DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
++L + + G +E K + L L ++YA G E A + + M+ R +
Sbjct: 325 LSLGK-KIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDV 375
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 95/186 (51%)
Query: 29 LQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYT 88
L++ ++ + + + T++ LL ++++ T N+ + +F ++ + + N MI Y
Sbjct: 226 LEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYM 285
Query: 89 QSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF 148
+++ P +A+ Y M+ G D + VL ACG L G +IHG + + + ++
Sbjct: 286 KNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLL 345
Query: 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKD 208
+ N LI MY+KCG + AR VFE + +D+VSW ++ + G A +F ++
Sbjct: 346 LENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSG 405
Query: 209 AISWSI 214
+ SI
Sbjct: 406 LVPDSI 411
>sp|Q9SZK1|PP355_ARATH Pentatricopeptide repeat-containing protein At4g38010
OS=Arabidopsis thaliana GN=PCMP-E45 PE=3 SV=1
Length = 559
Score = 329 bits (843), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 182/547 (33%), Positives = 301/547 (55%), Gaps = 7/547 (1%)
Query: 12 KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
K+ L+ L+ + QI QL T DL+ + +++++ L + L +
Sbjct: 6 KSVLLELISRCSSLRVFKQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSSVILHSI 65
Query: 72 IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
+++ +NT++ Y P+ + Y G D +T+P V KACG G+ EG
Sbjct: 66 RSVLSSFSYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREG 125
Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
+IHG V KMGF D++V N L+ Y CG A VF ++D+VSW ++ GF
Sbjct: 126 KQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRT 185
Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR----ILFEHMPIKDLISWNSM 247
G +A + F +M + ++ + + + G +S + ++ + + L + N++
Sbjct: 186 GLYKEALDTFSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNAL 245
Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM-LCQGVRPD 306
ID Y K L A ++F E+ +++ SW+ MI G KEA+ LF M G++PD
Sbjct: 246 IDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPD 305
Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
+ +SACA +GA+D G+W+H ++ + I D + TA++DMY KCG ++ A IF
Sbjct: 306 GHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFN 365
Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
+ KNV ++N ++ GL ++G G E+L+ F +M G + + FL L AC H+GL E
Sbjct: 366 GIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDE 425
Query: 427 GYRIFQSMK-RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
G R F MK R + PKLEHY C++DLL RAG L++AL +V++MP+KP++ + G +L A
Sbjct: 426 GRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICGAILSA 485
Query: 486 CRNHQNV-TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
C+N + L + +++ ++++ +D G+YVLLSNI+A W+ RIR++M+ + I K
Sbjct: 486 CKNRGTLMELPKEILDSFLDIEFEDSGVYVLLSNIFAANRRWDDVARIRRLMKVKGISKV 545
Query: 545 TGRSVIE 551
G S IE
Sbjct: 546 PGSSYIE 552
>sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2
SV=2
Length = 717
Score = 328 bits (840), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 178/514 (34%), Positives = 289/514 (56%), Gaps = 33/514 (6%)
Query: 65 AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKG-LLVDNYTYPFVLKACG 123
A LF+++ + N MI GY ++ + ++ M+++G + V++ T + KAC
Sbjct: 227 ARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACR 286
Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
+ EG++IHG V +M D+F+ N L+ MYSK G+M
Sbjct: 287 DFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYM-------------------- 326
Query: 184 VLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243
G+A+ VF M KD++SW+ +I G ++K IS A LFE MP KD++S
Sbjct: 327 -----------GEAKAVFGVMKNKDSVSWNSLITGLVQRK-QISEAYELFEKMPGKDMVS 374
Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
W MI G++ G++ +LF MPE++ +W+ MI + +G +EAL F +ML + V
Sbjct: 375 WTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEV 434
Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
P+ + +SA A + L G IH + + I D+ VQ +L+ MY KCG+ ++A +
Sbjct: 435 CPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYK 494
Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
IF +++ N++SYN MI+G NGFG++ALK F+ +E+ G + + FL +L AC H G
Sbjct: 495 IFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGY 554
Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
G++ F+SMK IEP +HY+C+VDLL R+G L+ A N++ +MP KP+ +WG+LL
Sbjct: 555 VDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLL 614
Query: 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
A + H V LAE+ + L+EL+ D YV+LS +Y+ G RI + + ++IKK
Sbjct: 615 SASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKK 674
Query: 544 ETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
+ G S I + G + F++G+ + EE+ ++
Sbjct: 675 DPGSSWIILKGEVHNFLAGDESQLNLEEIGFTLK 708
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/359 (25%), Positives = 168/359 (46%), Gaps = 44/359 (12%)
Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
+F N I +++ G++ A ++F + +VSW ++ + E G+M KA +VFDEMP
Sbjct: 50 IFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPV 109
Query: 207 KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNE 266
+ S++ MI K K D+ A LF +P K+ +S+ +MI G+ + G A+ L+ E
Sbjct: 110 RVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAE 169
Query: 267 MPE--RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324
P R+ + ++++ GY + G EA+ +F+ M + +V+S
Sbjct: 170 TPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVK----EVVSC-------------- 211
Query: 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG 384
++++ Y K G + +AR +F MT++NVI++ MI G
Sbjct: 212 ---------------------SSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYF 250
Query: 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLI-ACSHSGLATEGYRIFQSMKRHCGIEPK 443
GF E+ F +M EG K + L V+ AC EG +I + R +E
Sbjct: 251 KAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRM-PLEFD 309
Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502
L + L+ + S+ G + +A + M K +++ W +L+ + ++ A + E +
Sbjct: 310 LFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVS-WNSLITGLVQRKQISEAYELFEKM 367
Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 61 NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
N + A ++F+ I +PN +NTMI GY+ + +KAL + ++ G + T+ +L
Sbjct: 488 NTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLS 547
Query: 121 ACGVLMGLVE 130
AC V +G V+
Sbjct: 548 AC-VHVGYVD 556
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 327 bits (839), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 196/595 (32%), Positives = 337/595 (56%), Gaps = 58/595 (9%)
Query: 18 LLQISKTTTHILQILAQLTTNDLITEPFTLSQLLM--SLTSPNTLNMDQAERLF-NQIYQ 74
LL+ + Q+LAQ+ +LI + F +S+L+ ++T P N+D A+ LF N
Sbjct: 40 LLENCNSRNQFKQVLAQIMRFNLICDTFPMSRLIFFSAITYPE--NLDLAKLLFLNFTPN 97
Query: 75 PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134
PN +++NTMI + S N + Y +M R + D T+ +++KA L E +I
Sbjct: 98 PNVFVYNTMISAVSSSKN--ECFGLYSSMIRHRVSPDRQTFLYLMKASSFL---SEVKQI 152
Query: 135 HGEVVKMGFLC-DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
H ++ G L ++ N L+ Y + G+ G A VF D+ S+N+++ G+ + G
Sbjct: 153 HCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGF 212
Query: 194 MGKAREVFDEMPQKDAIS---WSIM-----------------IDGYRKKKGDISSARIL- 232
+A +++ +M D I ++++ + G+ +++G + S+ ++
Sbjct: 213 SLEALKLYFKMVS-DGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLIL 271
Query: 233 --------------------FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
F+ M KD+ SWN+M+ G+ ++GD+ AAQ +F++MP+R++
Sbjct: 272 SNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDL 331
Query: 273 FSWSIMIDGYAQHG-NPKEALYLFREM-LCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
SW+ ++ GY++ G + + LF EM + + V+PD ++++ IS A G L G+W+H
Sbjct: 332 VSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVH 391
Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
+ R ++ D + +ALIDMY KCG ++ A +F + T+K+V + MI GL +G G+
Sbjct: 392 GLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQ 451
Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
+AL+ F +M+ EG+ +++ L VL ACSHSGL EG +F MK G +P+ EHY L
Sbjct: 452 QALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSL 511
Query: 451 VDLLSRAGELEQALNIVE-SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509
VDLL RAG +E+A +IV+ MPM+P+ ++WG++L ACR +++ AE+ + L++L+ +
Sbjct: 512 VDLLCRAGRVEEAKDIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKLEPEK 571
Query: 510 CGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG-RSVIEIDGNIKEFVSGE 563
G YVLLSNIYA G W ++ + R+ M R +KK G SV+ ++G + FV+ E
Sbjct: 572 EGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSVVGVEG-LHRFVAAE 625
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 327 bits (839), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 171/444 (38%), Positives = 272/444 (61%), Gaps = 10/444 (2%)
Query: 146 DVFVVNGLIGMYSK----CGHMGCARSVFEGS-EIKDLVSWNLVLRGFVECGEMGKAREV 200
+VF+ N +I Y+ C + + + S E+ D ++ + + G ++V
Sbjct: 72 NVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQV 131
Query: 201 FDEM----PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGD 256
+ P+ ++ + +ID Y K D+ A +F+ M +D+ISWNS++ GYA++G
Sbjct: 132 HGHLCKFGPRFHVVTENALIDMYMKFD-DLVDAHKVFDEMYERDVISWNSLLSGYARLGQ 190
Query: 257 LVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISA 316
+ A+ LF+ M ++ + SW+ MI GY G EA+ FREM G+ PD IS++ + +
Sbjct: 191 MKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPS 250
Query: 317 CAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISY 376
CAQ+G+L+LGKWIH++ +R V ALI+MY KCG + +A ++F M K+VIS+
Sbjct: 251 CAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISW 310
Query: 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436
+ MI+G +G A++ F +M+ + + + FLG+L ACSH G+ EG R F M++
Sbjct: 311 STMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQ 370
Query: 437 HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAE 496
IEPK+EHY CL+D+L+RAG+LE+A+ I ++MPMKP+ +WG+LL +CR N+ +A
Sbjct: 371 DYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVAL 430
Query: 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNI 556
V ++ LVEL+ +D G YVLL+NIYAD G WE R+RKM+R +KK G S+IE++ +
Sbjct: 431 VAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIV 490
Query: 557 KEFVSGEIFDVQSEELELVIQSFV 580
+EFVSG+ E+ +V+Q F
Sbjct: 491 QEFVSGDNSKPFWTEISIVLQLFT 514
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 122/402 (30%), Positives = 188/402 (46%), Gaps = 44/402 (10%)
Query: 11 LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
++N + LQ K+ +I A + + L F +++ M +MD A RLFN
Sbjct: 9 VENYFIPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTK--MVDFCDKIEDMDYATRLFN 66
Query: 71 QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGL-LVDNYTYPFVLKACGVLMGLV 129
Q+ PN +++N++IR YT +S + Y + RK L D +T+PF+ K+C L
Sbjct: 67 QVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCY 126
Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
G ++HG + K G V N LI MY K + A VF+ +D++SWN +L G+
Sbjct: 127 LGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYA 186
Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK---------- 239
G+M KA+ +F M K +SW+ MI GY G A F M +
Sbjct: 187 RLGQMKKAKGLFHLMLDKTIVSWTAMISGY-TGIGCYVEAMDFFREMQLAGIEPDEISLI 245
Query: 240 ------------DLISW-----------------NSMIDGYAKIGDLVAAQQLFNEMPER 270
+L W N++I+ Y+K G + A QLF +M +
Sbjct: 246 SVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGK 305
Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG-KWI 329
+V SWS MI GYA HGN A+ F EM V+P+ I+ +G +SAC+ VG G ++
Sbjct: 306 DVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYF 365
Query: 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
+ + +I + LID+ + G L+ A I +M K
Sbjct: 366 DMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMK 407
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 327 bits (838), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 191/541 (35%), Positives = 299/541 (55%), Gaps = 68/541 (12%)
Query: 24 TTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERLFNQIYQPNTYMHNT 82
T + QI A L LI++ T S++L SP+ +M+ A +F +I N ++ NT
Sbjct: 37 TMRELKQIHASLIKTGLISDTVTASRVLAFCCASPS--DMNYAYLVFTRINHKNPFVWNT 94
Query: 83 MIRGYTQSSNPQKALSFYVNM--KRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
+IRG+++SS P+ A+S +++M + TYP V KA G L +G ++HG V+K
Sbjct: 95 IIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIK 154
Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
G D F+ N +L +V CG
Sbjct: 155 EGLEDDSFIR-------------------------------NTMLHMYVTCG-------- 175
Query: 201 FDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAA 260
+I+ +R +F M D+++WNSMI G+AK G + A
Sbjct: 176 -------------CLIEAWR-----------IFLGMIGFDVVAWNSMIMGFAKCGLIDQA 211
Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
Q LF+EMP+RN SW+ MI G+ ++G K+AL +FREM + V+PD +++ ++ACA +
Sbjct: 212 QNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYL 271
Query: 321 GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMI 380
GA + G+WIH ++ R+R ++ IV TALIDMY KCG ++E +F KK + +N MI
Sbjct: 272 GASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMI 331
Query: 381 AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGI 440
GL NGF E A+ F+++E G+ D + F+GVL AC+HSG F+ MK I
Sbjct: 332 LGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMI 391
Query: 441 EPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVE 500
EP ++HY+ +V++L AG LE+A ++++MP++ + +W +LL ACR NV +A+ +
Sbjct: 392 EPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAK 451
Query: 501 GLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFV 560
L +L D+ YVLLSN YA G++E A+ R +M++R+++KE G S IE+D + EF+
Sbjct: 452 CLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEFI 511
Query: 561 S 561
S
Sbjct: 512 S 512
>sp|P0C8Q2|PP323_ARATH Pentatricopeptide repeat-containing protein At4g19191,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2
SV=1
Length = 654
Score = 327 bits (838), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 185/520 (35%), Positives = 289/520 (55%), Gaps = 10/520 (1%)
Query: 61 NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
++D A ++F ++ + + N M+ G+ QS + KA S + M+ + D+ T +++
Sbjct: 102 SVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQ 161
Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD--L 178
+ L +H +++G V V N I Y KCG + A+ VFE + D +
Sbjct: 162 SASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTV 221
Query: 179 VSWNLVLRGFVECGEMGKAREVFDEMPQ---KDAISWSIMIDGYRKKKGDISSARILFEH 235
VSWN + + + GE A ++ M + K +S I + + ++ R++ H
Sbjct: 222 VSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSH 281
Query: 236 M----PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
+D+ + N+ I Y+K D +A+ LF+ M R SW++MI GYA+ G+ EA
Sbjct: 282 AIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEA 341
Query: 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD-MIVQTALID 350
L LF M+ G +PD+++++ IS C + G+L+ GKWI D +++ ALID
Sbjct: 342 LALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALID 401
Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
MY KCGS+ EAR IF + +K V+++ MIAG +NG EALK F++M + +
Sbjct: 402 MYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHIT 461
Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
FL VL AC+HSG +G+ F MK+ I P L+HYSC+VDLL R G+LE+AL ++ +M
Sbjct: 462 FLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNM 521
Query: 471 PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530
KP+ +WG LL AC+ H+NV +AE E L L+ YV ++NIYA AGMW+
Sbjct: 522 SAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFA 581
Query: 531 RIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570
RIR +M++R IKK G SVI+++G F GE V++E
Sbjct: 582 RIRSIMKQRNIKKYPGESVIQVNGKNHSFTVGEHGHVENE 621
Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 114/422 (27%), Positives = 186/422 (44%), Gaps = 30/422 (7%)
Query: 81 NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
N IR ++P ++L + MKR G +N+T+PFV KAC L + +H ++K
Sbjct: 21 NLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHLIK 80
Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
F DVFV + M+ KC + A VFE +D +WN +L GF + G KA +
Sbjct: 81 SPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSL 140
Query: 201 FDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-------DLISWNSMIDGYAK 253
F EM + S+ + + S ++L + + N+ I Y K
Sbjct: 141 FREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGK 200
Query: 254 IGDLVAAQQLFNEMP--ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311
GDL +A+ +F + +R V SW+ M Y+ G +A L+ ML + +PD+ + +
Sbjct: 201 CGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFI 260
Query: 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
++C L G+ IH D+ I MY K AR +F MT +
Sbjct: 261 NLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSR 320
Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
+S+ VMI+G G +EAL F M G D + L ++ C F
Sbjct: 321 TCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGK----------F 370
Query: 432 QSMKRHCGIEPKLEHYSC----------LVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
S++ I+ + + Y C L+D+ S+ G + +A +I ++ P K + W T
Sbjct: 371 GSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEK-TVVTWTT 429
Query: 482 LL 483
++
Sbjct: 430 MI 431
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 102/203 (50%), Gaps = 7/203 (3%)
Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
+V +W++ I +P E+L LFREM G P+ + ACA++ + + +H
Sbjct: 16 SVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVH 75
Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
+ +S D+ V TA +DM++KC S+D A ++F M +++ ++N M++G +G +
Sbjct: 76 AHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTD 135
Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR---HCGIEPKLEHY 447
+A F +M I D + + ++ + S + ++ ++M G++ ++
Sbjct: 136 KAFSLFREMRLNEITPDSVTVMTLIQSASFE----KSLKLLEAMHAVGIRLGVDVQVTVA 191
Query: 448 SCLVDLLSRAGELEQALNIVESM 470
+ + + G+L+ A + E++
Sbjct: 192 NTWISTYGKCGDLDSAKLVFEAI 214
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 325 bits (832), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 191/572 (33%), Positives = 294/572 (51%), Gaps = 57/572 (9%)
Query: 61 NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK-GLLVDNYTYPFVL 119
++ A ++F+++ + N++I Y + P+ AL + M + G DN T VL
Sbjct: 177 SLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVL 236
Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
C L G ++H V + ++FV N L+ MY+KCG M A +VF +KD+V
Sbjct: 237 PPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVV 296
Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRK-------------- 221
SWN ++ G+ + G A +F++M ++ D ++WS I GY +
Sbjct: 297 SWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQM 356
Query: 222 -----KKGDISSARILFEHMPIKDLISW--------------------------NSMIDG 250
K +++ +L + L+ N +ID
Sbjct: 357 LSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDM 416
Query: 251 YAKIGDLVAAQQLFNEMP--ERNVFSWSIMIDGYAQHGNPKEALYLFREML---CQGVRP 305
YAK + A+ +F+ + ER+V +W++MI GY+QHG+ +AL L EM CQ RP
Sbjct: 417 YAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQ-TRP 475
Query: 306 DVISVMGAISACAQVGALDLGKWIHVF-MKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
+ ++ A+ ACA + AL +GK IH + ++ + + + V LIDMY KCGS+ +AR +
Sbjct: 476 NAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLV 535
Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
F +M KN +++ ++ G GM+G+GEEAL F +M G D + L VL ACSHSG+
Sbjct: 536 FDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMI 595
Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
+G F MK G+ P EHY+CLVDLL RAG L AL ++E MPM+P +W L
Sbjct: 596 DQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLS 655
Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
CR H V L E E + EL ++ G Y LLSN+YA+AG W+ RIR +MR + +KK
Sbjct: 656 CCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKR 715
Query: 545 TGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
G S +E F G+ ++E+ V+
Sbjct: 716 PGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVL 747
Score = 213 bits (541), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 157/535 (29%), Positives = 256/535 (47%), Gaps = 66/535 (12%)
Query: 9 FSLKNPLVS--LLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAE 66
FS P ++ + KT + + I +L + ++T T S L+ + S L+ A
Sbjct: 23 FSTSAPEITPPFIHKCKTISQVKLIHQKLLSFGILTLNLT-SHLISTYISVGCLS--HAV 79
Query: 67 RLFNQIYQPN---TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
L + + P+ Y N++IR Y + K L + M DNYT+PFV KACG
Sbjct: 80 SLLRR-FPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACG 138
Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
+ + G H + GF+ +VFV N L+ MYS+C + AR VF+ + D+VSWN
Sbjct: 139 EISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNS 198
Query: 184 VLRGFVECGEMGKAREVFDEMPQK-----DAISW-------------------------- 212
++ + + G+ A E+F M + D I+
Sbjct: 199 IIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTS 258
Query: 213 ---------SIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQL 263
+ ++D Y K G + A +F +M +KD++SWN+M+ GY++IG A +L
Sbjct: 259 EMIQNMFVGNCLVDMY-AKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRL 317
Query: 264 FNEMPER----NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
F +M E +V +WS I GYAQ G EAL + R+ML G++P+ ++++ +S CA
Sbjct: 318 FEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCAS 377
Query: 320 VGALDLGKWIHVFMKRSRITM-------DMIVQTALIDMYMKCGSLDEARRIFYSMTKK- 371
VGAL GK IH + + I + + +V LIDMY KC +D AR +F S++ K
Sbjct: 378 VGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKE 437
Query: 372 -NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL--GVLIACSHSGLATEGY 428
+V+++ VMI G +G +AL+ ++M E F L+AC+ G
Sbjct: 438 RDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGK 497
Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
+I R+ L +CL+D+ ++ G + A + ++M M N W +L+
Sbjct: 498 QIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNM-MAKNEVTWTSLM 551
Score = 33.5 bits (75), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 92/238 (38%), Gaps = 26/238 (10%)
Query: 30 QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ 89
QI A N P +S L+ + + ++ A +F+ + N +++ GY
Sbjct: 498 QIHAYALRNQQNAVPLFVSNCLIDMYA-KCGSISDARLVFDNMMAKNEVTWTSLMTGYGM 556
Query: 90 SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV 149
++AL + M+R G +D T VL AC + +G E + VF
Sbjct: 557 HGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKT------VFG 610
Query: 150 VNG-------LIGMYSKCGHMGCARSVFEGSEIK-DLVSWNLVL-----RGFVECGEMGK 196
V+ L+ + + G + A + E ++ V W L G VE GE
Sbjct: 611 VSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEY-- 668
Query: 197 AREVFDEMPQKDAISWSIMIDGYRK--KKGDISSARILFEHMPIKDL--ISWNSMIDG 250
A E E+ S++++ + Y + D++ R L H +K SW I G
Sbjct: 669 AAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKG 726
>sp|Q9LND4|PPR14_ARATH Pentatricopeptide repeat-containing protein At1g06140,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2
SV=1
Length = 558
Score = 324 bits (831), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 196/555 (35%), Positives = 314/555 (56%), Gaps = 24/555 (4%)
Query: 15 LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI-- 72
L+++L +KT H Q+ A++ + E S L + N L D A FN+I
Sbjct: 10 LLTILSQAKTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRL--DFATSSFNRIPC 67
Query: 73 YQPNTYMHNTMIRGYTQSSNP--QKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
++ N + NT++ GY++S L Y M+R VD++ F +KAC V +GL+E
Sbjct: 68 WKRNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKAC-VGLGLLE 126
Query: 131 -GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
G IHG +K G D +V L+ MY++ G M A+ VF+ +++ V W ++++G++
Sbjct: 127 NGILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYL 186
Query: 190 ECGEMGKAREVF-------DEMPQKDAISWSIMIDG----YRKKKGD-ISSARILFEHMP 237
+ K EVF D DA++ ++ + K G + I +
Sbjct: 187 K---YSKDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFID 243
Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
D + S+ID Y K L A++LF +RNV W+ +I G+A+ EA LFR+
Sbjct: 244 QSDYLQ-ASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQ 302
Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
ML + + P+ ++ + +C+ +G+L GK +H +M R+ I MD + T+ IDMY +CG+
Sbjct: 303 MLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGN 362
Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
+ AR +F M ++NVIS++ MI G+NG EEAL CF +M+++ + + + F+ +L A
Sbjct: 363 IQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSA 422
Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
CSHSG EG++ F+SM R G+ P+ EHY+C+VDLL RAGE+ +A + +++MP+KP +
Sbjct: 423 CSHSGNVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMAS 482
Query: 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537
WG LL ACR H+ V LA + E L+ ++ + +YVLLSNIYADAGMWE +R+ M
Sbjct: 483 AWGALLSACRIHKEVDLAGEIAEKLLSMEPEKSSVYVLLSNIYADAGMWEMVNCVRRKMG 542
Query: 538 KRKIKKETGRSVIEI 552
+ +K G+S E+
Sbjct: 543 IKGYRKHVGQSATEV 557
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 324 bits (830), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 184/559 (32%), Positives = 299/559 (53%), Gaps = 14/559 (2%)
Query: 15 LVSLLQISKTTTHILQILAQLTTNDLI--TEPFTLSQLLMSLTSPNTLNMDQAERLFNQI 72
L +LL + H+ QI L T+ + LS+LL + T A RL Q+
Sbjct: 4 LKTLLDLPLHFLHLKQIHCLLLTSPIFYTRRDLFLSRLLRRCCTAAT-QFRYARRLLCQL 62
Query: 73 YQPNTYMHNTMIRGYTQSSNPQKALSF--YVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
+ + +++I ++ + LSF Y +M+R G++ +T+P +LKA L
Sbjct: 63 QTLSIQLWDSLIGHFSGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRD-SN 121
Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
+ H +VK G D FV N LI YS G A +F+G+E KD+V+W ++ GFV
Sbjct: 122 PFQFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVR 181
Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR-------ILFEHMPIK-DLI 242
G +A F EM + + + + K G + R + E +K D+
Sbjct: 182 NGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVF 241
Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302
+S++D Y K AQ++F+EMP RNV +W+ +I GY Q + + +F EML
Sbjct: 242 IGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSD 301
Query: 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
V P+ ++ +SACA VGAL G+ +H +M ++ I ++ T LID+Y+KCG L+EA
Sbjct: 302 VAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAI 361
Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422
+F + +KNV ++ MI G +G+ +A F M + + +++ F+ VL AC+H G
Sbjct: 362 LVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGG 421
Query: 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482
L EG R+F SMK +EPK +HY+C+VDL R G LE+A ++E MPM+P +WG L
Sbjct: 422 LVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGAL 481
Query: 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
+C H++ L + +++L+ G Y LL+N+Y+++ W+ R+RK M+ +++
Sbjct: 482 FGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVV 541
Query: 543 KETGRSVIEIDGNIKEFVS 561
K G S IE+ G + EF++
Sbjct: 542 KSPGFSWIEVKGKLCEFIA 560
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 324 bits (830), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 155/363 (42%), Positives = 235/363 (64%), Gaps = 1/363 (0%)
Query: 216 IDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
I G K+G AR++F++M K+ ++WN+MIDGY + G + A ++F++MPER++ SW
Sbjct: 115 IIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISW 174
Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
+ MI+G+ + G +EAL FREM GV+PD ++++ A++AC +GAL G W+H ++
Sbjct: 175 TAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLS 234
Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
++ V +LID+Y +CG ++ AR++FY+M K+ V+S+N +I G NG E+L
Sbjct: 235 QDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVY 294
Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
F +M+ +G D + F G L ACSH GL EG R FQ MK I P++EHY CLVDL S
Sbjct: 295 FRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYS 354
Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNH-QNVTLAEVVVEGLVELKADDCGLYV 514
RAG LE AL +V+SMPMKPN + G+LL AC NH N+ LAE +++ L +L YV
Sbjct: 355 RAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYV 414
Query: 515 LLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELEL 574
+LSN+YA G WE A ++R+ M+ +KK+ G S IEID + F++G+ V++ +
Sbjct: 415 ILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDCMHVFMAGDNAHVETTYIRE 474
Query: 575 VIQ 577
V++
Sbjct: 475 VLE 477
Score = 152 bits (383), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 107/362 (29%), Positives = 179/362 (49%), Gaps = 45/362 (12%)
Query: 70 NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV 129
NQ T + I T++ +A + +M G+ ++ T+ +L CG
Sbjct: 29 NQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGS 88
Query: 130 E--GTEIHGEVVKMGFLCD-VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
E G +HG K+G + V V +IGMYSK G AR VF+ E K+ V+WN ++
Sbjct: 89 EALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMID 148
Query: 187 GFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK----DLI 242
G++ G++ A ++FD+MP++D ISW+ MI+G+ KKG A + F M I D +
Sbjct: 149 GYMRSGQVDNAAKMFDKMPERDLISWTAMINGF-VKKGYQEEALLWFREMQISGVKPDYV 207
Query: 243 S------------------W-----------------NSMIDGYAKIGDLVAAQQLFNEM 267
+ W NS+ID Y + G + A+Q+F M
Sbjct: 208 AIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNM 267
Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG- 326
+R V SW+ +I G+A +GN E+L FR+M +G +PD ++ GA++AC+ VG ++ G
Sbjct: 268 EKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGL 327
Query: 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGM 385
++ + RI+ + L+D+Y + G L++A ++ SM K N + ++A
Sbjct: 328 RYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSN 387
Query: 386 NG 387
+G
Sbjct: 388 HG 389
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 133/317 (41%), Gaps = 49/317 (15%)
Query: 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV- 320
Q N+ SW+ I+ ++G EA F +M GV P+ I+ + +S C
Sbjct: 26 QRHNQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFT 85
Query: 321 -GALDLGKWIHVF--------------------------MKRSRITMDM------IVQTA 347
G+ LG +H + K++R+ D +
Sbjct: 86 SGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNT 145
Query: 348 LIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407
+ID YM+ G +D A ++F M ++++IS+ MI G G+ EEAL F +M+ G+ D
Sbjct: 146 MIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPD 205
Query: 408 DLIFLGVLIACSHSGLATEG-----YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
+ + L AC++ G + G Y + Q K + + + L+DL R G +E
Sbjct: 206 YVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVS------NSLIDLYCRCGCVEF 259
Query: 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLSNIY 520
A + +M K + W ++++ + N + V + E K D L+
Sbjct: 260 ARQVFYNME-KRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTAC- 317
Query: 521 ADAGMWEHALRIRKMMR 537
+ G+ E LR ++M+
Sbjct: 318 SHVGLVEEGLRYFQIMK 334
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 109/236 (46%), Gaps = 11/236 (4%)
Query: 62 MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
+D A ++F+++ + + MI G+ + ++AL ++ M+ G+ D L A
Sbjct: 156 VDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNA 215
Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
C L L G +H V+ F +V V N LI +Y +CG + AR VF E + +VSW
Sbjct: 216 CTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSW 275
Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEHMP 237
N V+ GF G ++ F +M +K DA++++ + G + F+ M
Sbjct: 276 NSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTAC-SHVGLVEEGLRYFQIMK 334
Query: 238 IKDLIS-----WNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQHGN 287
IS + ++D Y++ G L A +L MP + N ++ + HGN
Sbjct: 335 CDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGN 390
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 323 bits (828), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 182/520 (35%), Positives = 288/520 (55%), Gaps = 21/520 (4%)
Query: 81 NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
N +R S +++S Y +M R G D +++PF+LK+C L V G ++H V K
Sbjct: 22 NVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTK 81
Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS--WNLVLRGFVECGEMGKAR 198
G + FV+ LI MY KCG + AR VFE + +S +N ++ G+ ++ A
Sbjct: 82 GGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAA 141
Query: 199 EVFDEMPQKDAISWSIMIDGY-------------RKKKGDISSARILFEHMPIKDLISWN 245
+F M + S+ + G R G + E + N
Sbjct: 142 YMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSE------VAVLN 195
Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
S I Y K G + A ++LF+EMP + + +W+ +I GY+Q+G + L L+ +M GV P
Sbjct: 196 SFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCP 255
Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
D +++ +S+CA +GA +G + ++ + ++ V A I MY +CG+L +AR +F
Sbjct: 256 DPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVF 315
Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
M K+++S+ MI GM+G GE L F M GI D +F+ VL ACSHSGL
Sbjct: 316 DIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTD 375
Query: 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
+G +F++MKR +EP EHYSCLVDLL RAG L++A+ +ESMP++P+ A+WG LL A
Sbjct: 376 KGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGA 435
Query: 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
C+ H+NV +AE+ ++E + ++ G YVL+SNIY+D+ E RIR MMR+R +K+
Sbjct: 436 CKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKP 495
Query: 546 GRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
G S +E G + F++G+ Q+EE+ ++ + +E
Sbjct: 496 GYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVME 535
Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/349 (28%), Positives = 169/349 (48%), Gaps = 12/349 (3%)
Query: 30 QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPN--TYMHNTMIRGY 87
Q+ +T TEPF L+ L+ S+ L D A ++F + Q + + +N +I GY
Sbjct: 74 QLHCHVTKGGCETEPFVLTALI-SMYCKCGLVAD-ARKVFEENPQSSQLSVCYNALISGY 131
Query: 88 TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV 147
T +S A + MK G+ VD+ T ++ C V L G +HG+ VK G +V
Sbjct: 132 TANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEV 191
Query: 148 FVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK 207
V+N I MY KCG + R +F+ +K L++WN V+ G+ + G E++++M
Sbjct: 192 AVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSS 251
Query: 208 DAISWSIMIDGYRKKKGDISSARILFE-------HMPIKDLISWNSMIDGYAKIGDLVAA 260
+ + + +I E + + ++ N+ I YA+ G+L A
Sbjct: 252 GVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKA 311
Query: 261 QQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320
+ +F+ MP +++ SW+ MI Y HG + L LF +M+ +G+RPD + +SAC+
Sbjct: 312 RAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHS 371
Query: 321 GALDLGKWIHVFMKRS-RITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
G D G + MKR ++ + L+D+ + G LDEA SM
Sbjct: 372 GLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESM 420
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 101/214 (47%), Gaps = 10/214 (4%)
Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334
W++ + A E++ L+R ML G PD S + +CA + G+ +H +
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS--YNVMIAGLGMNGFGEEA 392
+ + V TALI MY KCG + +AR++F + + +S YN +I+G N +A
Sbjct: 81 KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140
Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC---GIEPKLEHYSC 449
F +M+ G+ D + LG++ C+ E + +S+ C G++ ++ +
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCT----VPEYLWLGRSLHGQCVKGGLDSEVAVLNS 196
Query: 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
+ + + G +E + + MP+K L W ++
Sbjct: 197 FITMYMKCGSVEAGRRLFDEMPVK-GLITWNAVI 229
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 320 bits (820), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 180/558 (32%), Positives = 293/558 (52%), Gaps = 77/558 (13%)
Query: 26 THILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIR 85
+H I+ L ++L F + N ++ A +F PNTY+HNTMIR
Sbjct: 34 SHCYMIITGLNRDNLNVAKFIEA-------CSNAGHLRYAYSVFTHQPCPNTYLHNTMIR 86
Query: 86 GYTQSSNPQKALSFYVNMKRKGLLV----DNYTYPFVLKACGVLMGLVEGTEIHGEVVKM 141
+ P A S + + RK + D +T+PFVLK + + G +IHG+VV
Sbjct: 87 ALSLLDEPN-AHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVF 145
Query: 142 GFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVF 201
GF V VV GLI M + CG +G AR+
Sbjct: 146 GFDSSVHVVTGLIQM-------------------------------YFSCGGLGDARK-- 172
Query: 202 DEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQ 261
+F+ M +KD+ WN+++ GY K+G++ A+
Sbjct: 173 ------------------------------MFDEMLVKDVNVWNALLAGYGKVGEMDEAR 202
Query: 262 QLFNEMP--ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
L MP RN SW+ +I GYA+ G EA+ +F+ ML + V PD ++++ +SACA
Sbjct: 203 SLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACAD 262
Query: 320 VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVM 379
+G+L+LG+ I ++ + + + A+IDMY K G++ +A +F + ++NV+++ +
Sbjct: 263 LGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTI 322
Query: 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439
IAGL +G G EAL F +M G+ +D+ F+ +L ACSH G G R+F SM+ G
Sbjct: 323 IAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYG 382
Query: 440 IEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVV 499
I P +EHY C++DLL RAG+L +A +++SMP K N A+WG+LL A H ++ L E +
Sbjct: 383 IHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERAL 442
Query: 500 EGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEF 559
L++L+ ++ G Y+LL+N+Y++ G W+ + +R MM+ +KK G S IE++ + +F
Sbjct: 443 SELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVENRVYKF 502
Query: 560 VSGEIFDVQSEELELVIQ 577
+SG++ Q E + ++Q
Sbjct: 503 ISGDLTHPQVERIHEILQ 520
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 318 bits (815), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 175/488 (35%), Positives = 266/488 (54%), Gaps = 48/488 (9%)
Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGM---YSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
E +IH ++K G + D + + + + + A+ VF+G + D WNL++R
Sbjct: 29 ELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIR 88
Query: 187 GFVECGEMGKAR----------------------------EVFDEMPQ-----------K 207
GF E ++ F+E Q
Sbjct: 89 GFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYEN 148
Query: 208 DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
D + + +I+ Y G+ A +LF+ +P D +SWNS+I GY K G + A LF +M
Sbjct: 149 DVYAVNSLINSY-AVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKM 207
Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK 327
E+N SW+ MI GY Q KEAL LF EM V PD +S+ A+SACAQ+GAL+ GK
Sbjct: 208 AEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGK 267
Query: 328 WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
WIH ++ ++RI MD ++ LIDMY KCG ++EA +F ++ KK+V ++ +I+G +G
Sbjct: 268 WIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHG 327
Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
G EA+ F +M+ GI + + F VL ACS++GL EG IF SM+R ++P +EHY
Sbjct: 328 HGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHY 387
Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
C+VDLL RAG L++A ++ MP+KPN +WG LL ACR H+N+ L E + E L+ +
Sbjct: 388 GCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDP 447
Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSG----- 562
G YV +NI+A W+ A R++M+++ + K G S I ++G EF++G
Sbjct: 448 YHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHP 507
Query: 563 EIFDVQSE 570
EI +QS+
Sbjct: 508 EIEKIQSK 515
Score = 192 bits (489), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 126/434 (29%), Positives = 218/434 (50%), Gaps = 49/434 (11%)
Query: 6 AAKFSLKNPL---VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLN 61
+ FSL++ L +S LQ + QI A++ L+ + + +++ L ++S ++
Sbjct: 5 SCSFSLEHNLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDF 64
Query: 62 MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
+ A+ +F+ +P+T++ N MIRG++ S P+++L Y M + YT+P +LKA
Sbjct: 65 LPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKA 124
Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
C L E T+IH ++ K+G+ DV+ VN LI Y+ G+ A +F+ D VSW
Sbjct: 125 CSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSW 184
Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
N V++G+V+ G+M A +F +M +K+AISW+ MI GY + + A LF M D+
Sbjct: 185 NSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMN-KEALQLFHEMQNSDV 243
Query: 242 ISWN---------------------------------------SMIDGYAKIGDLVAAQQ 262
N +ID YAK G++ A +
Sbjct: 244 EPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALE 303
Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
+F + +++V +W+ +I GYA HG+ +EA+ F EM G++P+VI+ ++AC+ G
Sbjct: 304 VFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGL 363
Query: 323 LDLGKWIHVFMKRSRITMDMIVQTA-LIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMI 380
++ GK I M+R I ++D+ + G LDEA+R M K N + + ++
Sbjct: 364 VEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALL 423
Query: 381 AGLGMNG---FGEE 391
++ GEE
Sbjct: 424 KACRIHKNIELGEE 437
>sp|Q9LJR6|PP253_ARATH Putative pentatricopeptide repeat-containing protein At3g25060,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E96 PE=3
SV=1
Length = 601
Score = 318 bits (814), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 173/552 (31%), Positives = 307/552 (55%), Gaps = 13/552 (2%)
Query: 18 LLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNT 77
L ISK HI QI A + + + ++S+ L++ + + A ++F+++ Q
Sbjct: 23 LQSISKLKRHITQIHAFVISTGNLLNGSSISRDLIA-SCGRIGEISYARKVFDELPQRGV 81
Query: 78 YMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLV--EGTEIH 135
++N+MI Y++ NP + L Y M + + D+ T+ +KAC L GLV +G +
Sbjct: 82 SVYNSMIVVYSRGKNPDEVLRLYDQMIAEKIQPDSSTFTMTIKAC--LSGLVLEKGEAVW 139
Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
+ V G+ DVFV + ++ +Y KCG M A +F +D++ W ++ GF + G+
Sbjct: 140 CKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQAGKSL 199
Query: 196 KAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARI-------LFEHMPIKDLISWNSMI 248
KA E + EM + +++ G + GD+ ++ L+ +++ S++
Sbjct: 200 KAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMNVVVETSLV 259
Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
D YAK+G + A ++F+ M + SW +I G+AQ+G +A EM G +PD++
Sbjct: 260 DMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQSLGFQPDLV 319
Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
+++G + AC+QVG+L G+ +H ++ + R +D + TAL+DMY KCG+L +R IF +
Sbjct: 320 TLVGVLVACSQVGSLKTGRLVHCYILK-RHVLDRVTATALMDMYSKCGALSSSREIFEHV 378
Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
+K+++ +N MI+ G++G G+E + F +M I D F +L A SHSGL +G
Sbjct: 379 GRKDLVCWNTMISCYGIHGNGQEVVSLFLKMTESNIEPDHATFASLLSALSHSGLVEQGQ 438
Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
F M I+P +HY CL+DLL+RAG +E+AL+++ S + L +W LL C N
Sbjct: 439 HWFSVMINKYKIQPSEKHYVCLIDLLARAGRVEEALDMINSEKLDNALPIWVALLSGCIN 498
Query: 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRS 548
H+N+++ ++ +++L D G+ L+SN +A A W+ ++RK+MR ++K G S
Sbjct: 499 HRNLSVGDIAANKILQLNPDSIGIQTLVSNFFATANKWKEVAKVRKLMRNGAMEKVPGYS 558
Query: 549 VIEIDGNIKEFV 560
IE++G ++ F+
Sbjct: 559 AIEVNGELRTFL 570
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 318 bits (814), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 177/526 (33%), Positives = 293/526 (55%), Gaps = 7/526 (1%)
Query: 62 MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
+++A ++F+++ + + NT++ GY+Q+ + AL +M + L T VL A
Sbjct: 186 VNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPA 245
Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
L + G EIHG ++ GF V + L+ MY+KCG + AR +F+G +++VSW
Sbjct: 246 VSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSW 305
Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK---KKGDISSARILF----E 234
N ++ +V+ +A +F +M + + + G GD+ R + E
Sbjct: 306 NSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVE 365
Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
+++ NS+I Y K ++ A +F ++ R + SW+ MI G+AQ+G P +AL
Sbjct: 366 LGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNY 425
Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
F +M + V+PD + + I+A A++ KWIH + RS + ++ V TAL+DMY K
Sbjct: 426 FSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAK 485
Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
CG++ AR IF M++++V ++N MI G G +GFG+ AL+ F +M+ I + + FL V
Sbjct: 486 CGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSV 545
Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
+ ACSHSGL G + F MK + IE ++HY +VDLL RAG L +A + + MP+KP
Sbjct: 546 ISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKP 605
Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534
+ ++G +L AC+ H+NV AE E L EL DD G +VLL+NIY A MWE ++R
Sbjct: 606 AVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRV 665
Query: 535 MMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFV 580
M ++ ++K G S++EI + F SG S+++ ++ +
Sbjct: 666 SMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLI 711
Score = 242 bits (617), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 154/491 (31%), Positives = 251/491 (51%), Gaps = 35/491 (7%)
Query: 12 KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
++P LL+ + + QIL + N L E F ++L+ ++ D+A R+F
Sbjct: 37 EHPAALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSV--DEAARVFEP 94
Query: 72 IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
I +++TM++G+ + S+ KAL F+V M+ + Y + ++LK CG L G
Sbjct: 95 IDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVG 154
Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
EIHG +VK GF D+F + GL MY+KC + AR VF+ +DLVSWN ++ G+ +
Sbjct: 155 KEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQN 214
Query: 192 GEMGKAREVFDEMPQKD-------------------AISWSIMIDGYRKKKGDISSARIL 232
G A E+ M +++ IS I GY + G S I
Sbjct: 215 GMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNI- 273
Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
+++D YAK G L A+QLF+ M ERNV SW+ MID Y Q+ NPKEA+
Sbjct: 274 -----------STALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAM 322
Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
+F++ML +GV+P +SVMGA+ ACA +G L+ G++IH + ++ V +LI MY
Sbjct: 323 LIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMY 382
Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
KC +D A +F + + ++S+N MI G NG +AL F+QM + + D ++
Sbjct: 383 CKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYV 442
Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
V+ A + + I + R C ++ + + LVD+ ++ G + A I + M
Sbjct: 443 SVITAIAELSITHHAKWIHGVVMRSC-LDKNVFVTTALVDMYAKCGAIMIARLIFDMMSE 501
Query: 473 KPNLALWGTLL 483
+ ++ W ++
Sbjct: 502 R-HVTTWNAMI 511
Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 124/496 (25%), Positives = 231/496 (46%), Gaps = 19/496 (3%)
Query: 89 QSSNPQKALSFYVNMKRKGLLVDNYTYP--FVLKACGVLMGLVEGTEIHGEVVKMGFLCD 146
Q NP +++ +R + + Y +P +L+ C L E +I V K G +
Sbjct: 13 QIPNPPSRHRHFLS-ERNYIPANVYEHPAALLLERCS---SLKELRQILPLVFKNGLYQE 68
Query: 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ 206
F L+ ++ + G + A VFE + K V ++ +L+GF + ++ KA + F M
Sbjct: 69 HFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRY 128
Query: 207 KDAISWSIMIDGYRKKKGDISSARI-------LFEHMPIKDLISWNSMIDGYAKIGDLVA 259
D K GD + R+ L + DL + + + YAK +
Sbjct: 129 DDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNE 188
Query: 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319
A+++F+ MPER++ SW+ ++ GY+Q+G + AL + + M + ++P I+++ + A +
Sbjct: 189 ARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSA 248
Query: 320 VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVM 379
+ + +GK IH + RS + + TAL+DMY KCGSL+ AR++F M ++NV+S+N M
Sbjct: 249 LRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSM 308
Query: 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439
I N +EA+ F +M EG+ D+ +G L AC+ G G R + G
Sbjct: 309 IDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERG-RFIHKLSVELG 367
Query: 440 IEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA-CRNHQNVTLAEVV 498
++ + + L+ + + E++ A ++ + + L W ++L +N + +
Sbjct: 368 LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSR-TLVSWNAMILGFAQNGRPIDALNYF 426
Query: 499 VEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIK- 557
+ D YV + A+ + HA I ++ + + K + +D K
Sbjct: 427 SQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKC 486
Query: 558 --EFVSGEIFDVQSEE 571
++ IFD+ SE
Sbjct: 487 GAIMIARLIFDMMSER 502
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 317 bits (813), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 181/539 (33%), Positives = 293/539 (54%), Gaps = 32/539 (5%)
Query: 62 MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
D A +LF + + +T N MI GY QS +++L+F+ M G+L D T+ +L +
Sbjct: 290 FDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPS 349
Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
L +IH +++ D+F+ + LI Y KC + A+++F D+V +
Sbjct: 350 VSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVF 409
Query: 182 NLVLRGFVECGEMGKAREVFD-----EMPQKDAISWSIM--------------IDGYRKK 222
++ G++ G + E+F ++ + SI+ + G+ K
Sbjct: 410 TAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIK 469
Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
KG + I ++ID YAK G + A ++F + +R++ SW+ MI
Sbjct: 470 KGFDNRCNI------------GCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRC 517
Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
AQ NP A+ +FR+M G+ D +S+ A+SACA + + GK IH FM + + D+
Sbjct: 518 AQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDV 577
Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM-ET 401
++ LIDMY KCG+L A +F +M +KN++S+N +IA G +G +++L F +M E
Sbjct: 578 YSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEK 637
Query: 402 EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461
GI D + FL ++ +C H G EG R F+SM GI+P+ EHY+C+VDL RAG L
Sbjct: 638 SGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLT 697
Query: 462 QALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521
+A V+SMP P+ +WGTLL ACR H+NV LAEV L++L + G YVL+SN +A
Sbjct: 698 EAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHA 757
Query: 522 DAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFV 580
+A WE ++R +M++R+++K G S IEI+ FVSG++ +S + ++ S +
Sbjct: 758 NAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLL 816
Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 119/450 (26%), Positives = 221/450 (49%), Gaps = 9/450 (2%)
Query: 62 MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
+D +LF+++ Q + + N M+ GY + + + M+ + + T+ VL
Sbjct: 189 IDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSV 248
Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
C + + G ++HG VV G + + N L+ MYSKCG A +F D V+W
Sbjct: 249 CASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTW 308
Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARI---LFE 234
N ++ G+V+ G M ++ F EM DAI++S ++ K + +I +
Sbjct: 309 NCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMR 368
Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
H D+ +++ID Y K + AQ +F++ +V ++ MI GY +G ++L +
Sbjct: 369 HSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEM 428
Query: 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
FR ++ + P+ I+++ + + AL LG+ +H F+ + + A+IDMY K
Sbjct: 429 FRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAK 488
Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
CG ++ A IF ++K++++S+N MI + A+ F QM GI D +
Sbjct: 489 CGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAA 548
Query: 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
L AC++ + G I M +H + + S L+D+ ++ G L+ A+N+ ++M K
Sbjct: 549 LSACANLPSESFGKAIHGFMIKH-SLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEK- 606
Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVE 504
N+ W +++ AC NH + + + +VE
Sbjct: 607 NIVSWNSIIAACGNHGKLKDSLCLFHEMVE 636
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 116/435 (26%), Positives = 203/435 (46%), Gaps = 35/435 (8%)
Query: 81 NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140
N++I + ++ +AL+FY M G+ D T+P ++KAC L + V
Sbjct: 107 NSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSS 166
Query: 141 MGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREV 200
+G C+ FV + LI Y + G + +F+ KD V WN++L G+ +CG + +
Sbjct: 167 LGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKG 226
Query: 201 FDEMPQKDAISWS--------------IMIDGYRKKKGDISSARILFEHMPIKDLISWNS 246
F M + D IS + ++ID + G + + + FE IK NS
Sbjct: 227 FSVM-RMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEG-SIK-----NS 279
Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
++ Y+K G A +LF M + +W+ MI GY Q G +E+L F EM+ GV PD
Sbjct: 280 LLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPD 339
Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
I+ + + ++ L+ K IH ++ R I++D+ + +ALID Y KC + A+ IF
Sbjct: 340 AITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFS 399
Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF------LGVLIACSH 420
+V+ + MI+G NG ++L+ F + I +++ +G+L+A
Sbjct: 400 QCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKL 459
Query: 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480
G G+ I + C I ++D+ ++ G + A I E + K ++ W
Sbjct: 460 -GRELHGFIIKKGFDNRCNIG------CAVIDMYAKCGRMNLAYEIFERLS-KRDIVSWN 511
Query: 481 TLLLACRNHQNVTLA 495
+++ C N + A
Sbjct: 512 SMITRCAQSDNPSAA 526
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 153/313 (48%), Gaps = 11/313 (3%)
Query: 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK 176
+L+AC L +G ++H ++ D + ++GMY+ CG +F +++
Sbjct: 40 LLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLR 99
Query: 177 --DLVSWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMID---GYRKKKG-DI 226
+ WN ++ FV G + +A + +M D ++ ++ + KG D
Sbjct: 100 RSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDF 159
Query: 227 SSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286
S + M + ++ +S+I Y + G + +LF+ + +++ W++M++GYA+ G
Sbjct: 160 LSDTVSSLGMDCNEFVA-SSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCG 218
Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
+ F M + P+ ++ +S CA +DLG +H + S + + ++
Sbjct: 219 ALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKN 278
Query: 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK 406
+L+ MY KCG D+A ++F M++ + +++N MI+G +G EE+L F +M + G+
Sbjct: 279 SLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLP 338
Query: 407 DDLIFLGVLIACS 419
D + F +L + S
Sbjct: 339 DAITFSSLLPSVS 351
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 107/235 (45%), Gaps = 4/235 (1%)
Query: 251 YAKIGDLVAAQQLFNEMPER--NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
YA G ++F + R ++ W+ +I + ++G +AL + +MLC GV PDV
Sbjct: 80 YAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVS 139
Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
+ + AC + ++ + + + V ++LI Y++ G +D ++F +
Sbjct: 140 TFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRV 199
Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
+K+ + +NVM+ G G + +K F+ M + I + + F VL C+ L G
Sbjct: 200 LQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGV 259
Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
++ + G++ + + L+ + S+ G + A + M + + W ++
Sbjct: 260 QL-HGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMS-RADTVTWNCMI 312
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/233 (20%), Positives = 98/233 (42%), Gaps = 22/233 (9%)
Query: 314 ISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY--SMTKK 371
+ AC+ L GK +H F+ + I+ D ++ MY CGS + ++FY + +
Sbjct: 42 LQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRS 101
Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR-- 429
++ +N +I+ NG +AL + +M G+ D F ++ AC +A + ++
Sbjct: 102 SIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKAC----VALKNFKGI 157
Query: 430 -IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
G++ S L+ G+++ + + + ++ + +W +L
Sbjct: 158 DFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRV-LQKDCVIWNVML---NG 213
Query: 489 HQNVTLAEVVVEGLVELKAD---------DCGLYVLLSNIYADAGMWEHALRI 532
+ + V++G ++ D DC L V S + D G+ H L +
Sbjct: 214 YAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVV 266
>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g09190
OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
Length = 484
Score = 317 bits (812), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 183/542 (33%), Positives = 283/542 (52%), Gaps = 67/542 (12%)
Query: 11 LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFN 70
++ L+ LL T T + +I A L + L L+ + S + N D A R+F+
Sbjct: 3 IERKLLRLLHGHNTRTRLPEIHAHLLRHFLHGSNLLLAHFISICGSLS--NSDYANRVFS 60
Query: 71 QIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
I PN + N MI+ Y+ P ++LSF+ +MK +G+ D YTY +LK+C L L
Sbjct: 61 HIQNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRF 120
Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE 190
G +HGE+++ GF + G++ +Y+ G
Sbjct: 121 GKCVHGELIRTGFHRLGKIRIGVVELYTSGG----------------------------- 151
Query: 191 CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDG 250
MG A++VFDEM +++ ++ WN MI G
Sbjct: 152 --RMGDAQKVFDEMSERN--------------------------------VVVWNLMIRG 177
Query: 251 YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310
+ GD+ LF +M ER++ SW+ MI ++ G +EAL LF EM+ QG PD +V
Sbjct: 178 FCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATV 237
Query: 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMI-VQTALIDMYMKCGSLDEARRIFYSMT 369
+ + A +G LD GKWIH + S + D I V AL+D Y K G L+ A IF M
Sbjct: 238 VTVLPISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQ 297
Query: 370 KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKDDLIFLGVLIACSHSGLATEGY 428
++NV+S+N +I+G +NG GE + F M EG + ++ FLGVL CS++G G
Sbjct: 298 RRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGE 357
Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
+F M +E + EHY +VDL+SR+G + +A +++MP+ N A+WG+LL ACR+
Sbjct: 358 ELFGLMMERFKLEARTEHYGAMVDLMSRSGRITEAFKFLKNMPVNANAAMWGSLLSACRS 417
Query: 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRS 548
H +V LAEV LV+++ + G YVLLSN+YA+ G W+ ++R +M+K +++K TG+S
Sbjct: 418 HGDVKLAEVAAMELVKIEPGNSGNYVLLSNLYAEEGRWQDVEKVRTLMKKNRLRKSTGQS 477
Query: 549 VI 550
I
Sbjct: 478 TI 479
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 316 bits (810), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 167/506 (33%), Positives = 292/506 (57%), Gaps = 14/506 (2%)
Query: 62 MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
+D+A ++F+ + + N +++GY + A S + M K + ++T
Sbjct: 95 IDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKV--SWTV------ 146
Query: 122 CGVLMGLVEGTEIHG--EVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
+L+G ++ I ++ +M D +I K G + AR +F+ + ++
Sbjct: 147 --MLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVI 204
Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239
+W ++ G+ + + AR++FD MP+K +SW+ M+ GY + G I A LFE MP+K
Sbjct: 205 TWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGY-VQNGRIEDAEELFEVMPVK 263
Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
+I+ N+MI G + G++ A+++F+ M ERN SW +I + ++G EAL LF M
Sbjct: 264 PVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQ 323
Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
QGVRP +++ +S CA + +L GK +H + R + +D+ V + L+ MY+KCG L
Sbjct: 324 KQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELV 383
Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIAC 418
+++ IF K++I +N +I+G +G GEEALK F +M G K +++ F+ L AC
Sbjct: 384 KSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSAC 443
Query: 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478
S++G+ EG +I++SM+ G++P HY+C+VD+L RAG +A+ +++SM ++P+ A+
Sbjct: 444 SYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAV 503
Query: 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538
WG+LL ACR H + +AE + L+E++ ++ G Y+LLSN+YA G W +RK+M+
Sbjct: 504 WGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKT 563
Query: 539 RKIKKETGRSVIEIDGNIKEFVSGEI 564
R ++K G S E++ + F G I
Sbjct: 564 RLVRKSPGCSWTEVENKVHAFTRGGI 589
Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 110/392 (28%), Positives = 196/392 (50%), Gaps = 21/392 (5%)
Query: 151 NGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAI 210
NGL+ Y K G + AR VF+ +++VSW +++G+V G++ A +F +MP+K+ +
Sbjct: 83 NGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKV 142
Query: 211 SWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPER 270
SW++M+ G+ + G I A L+E +P KD I+ SMI G K G + A+++F+EM ER
Sbjct: 143 SWTVMLIGFL-QDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSER 201
Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIH 330
+V +W+ M+ GY Q+ +A +F M + +MG + Q G ++ + +
Sbjct: 202 SVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYV----QNGRIEDAEELF 257
Query: 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
M +I A+I + G + +ARR+F SM ++N S+ +I NGF
Sbjct: 258 EVMP----VKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFEL 313
Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
EAL F M+ +G+ + +L C+ G ++ + R C + + S L
Sbjct: 314 EALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVR-CQFDVDVYVASVL 372
Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL----- 505
+ + + GEL ++ I + P K ++ +W +++ +H L E ++ E+
Sbjct: 373 MTMYIKCGELVKSKLIFDRFPSK-DIIMWNSIISGYASH---GLGEEALKVFCEMPLSGS 428
Query: 506 -KADDCGLYVLLSNIYADAGMWEHALRIRKMM 536
K ++ LS + AGM E L+I + M
Sbjct: 429 TKPNEVTFVATLSAC-SYAGMVEEGLKIYESM 459
Score = 126 bits (316), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 157/302 (51%), Gaps = 19/302 (6%)
Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL 241
N+ + G++ +AR++FD K SW+ M+ GY AR LF+ MP +++
Sbjct: 21 NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMP-RDARKLFDEMPDRNI 79
Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301
ISWN ++ GY K G++ A+++F+ MPERNV SW+ ++ GY +G A LF +M +
Sbjct: 80 ISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEK 139
Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361
+ ++G + Q G +D ++ + D I +T++I K G +DEA
Sbjct: 140 NKVSWTVMLIGFL----QDGRIDDACKLYEMIPDK----DNIARTSMIHGLCKEGRVDEA 191
Query: 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421
R IF M++++VI++ M+ G G N ++A K F M K ++ + +L+ +
Sbjct: 192 REIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPE----KTEVSWTSMLMGYVQN 247
Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
G + +F+ M ++P + + ++ L + GE+ +A + +SM + N A W T
Sbjct: 248 GRIEDAEELFEVMP----VKPVIA-CNAMISGLGQKGEIAKARRVFDSMKER-NDASWQT 301
Query: 482 LL 483
++
Sbjct: 302 VI 303
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 121/259 (46%), Gaps = 24/259 (9%)
Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
N I ++IG + A++LF+ +++ SW+ M+ GY + P++A LF EM
Sbjct: 21 NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEM------ 74
Query: 305 PD--VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362
PD +IS G +S + G +D + + M + + TAL+ Y+ G +D A
Sbjct: 75 PDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNV----VSWTALVKGYVHNGKVDVAE 130
Query: 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP-KDDLIFLGVLIACSHS 421
+F+ M +KN +S+ VM+ G +G ++A K + E IP KD++ ++
Sbjct: 131 SLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLY-----EMIPDKDNIARTSMIHGLCKE 185
Query: 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT 481
G E IF M I ++ +V + ++ A I + MP K ++ W +
Sbjct: 186 GRVDEAREIFDEMSERSVIT-----WTTMVTGYGQNNRVDDARKIFDVMPEKTEVS-WTS 239
Query: 482 LLLACRNHQNVTLAEVVVE 500
+L+ + + AE + E
Sbjct: 240 MLMGYVQNGRIEDAEELFE 258
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 316 bits (809), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 185/554 (33%), Positives = 297/554 (53%), Gaps = 81/554 (14%)
Query: 68 LFNQ-IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
LFN+ + + + + N++I +S + +AL + +M++ L ++P +KAC L
Sbjct: 31 LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90
Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
+ G + H + G+ D+FV + LI MYS CG
Sbjct: 91 DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCG------------------------- 125
Query: 187 GFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM---------- 236
++ AR+VFDE+P+++ +SW+ MI GY G+ A LF+ +
Sbjct: 126 ------KLEDARKVFDEIPKRNIVSWTSMIRGY-DLNGNALDAVSLFKDLLVDENDDDDA 178
Query: 237 ------------------PIKDLIS-----------------WNSMIDGYAKIGD--LVA 259
P K L N+++D YAK G+ +
Sbjct: 179 MFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAV 238
Query: 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP-DVISVMGAISACA 318
A+++F+++ +++ S++ ++ YAQ G EA +FR ++ V + I++ + A +
Sbjct: 239 ARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVS 298
Query: 319 QVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNV 378
GAL +GK IH + R + D+IV T++IDMY KCG ++ AR+ F M KNV S+
Sbjct: 299 HSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTA 358
Query: 379 MIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC 438
MIAG GM+G +AL+ F M G+ + + F+ VL ACSH+GL EG+R F +MK
Sbjct: 359 MIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRF 418
Query: 439 GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVV 498
G+EP LEHY C+VDLL RAG L++A ++++ M MKP+ +W +LL ACR H+NV LAE+
Sbjct: 419 GVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEIS 478
Query: 499 VEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKE 558
V L EL + +CG Y+LLS+IYADAG W+ R+R +M+ R + K G S++E++G +
Sbjct: 479 VARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHV 538
Query: 559 FVSGEIFDVQSEEL 572
F+ G+ Q E++
Sbjct: 539 FLIGDEEHPQREKI 552
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/350 (28%), Positives = 171/350 (48%), Gaps = 25/350 (7%)
Query: 42 TEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYV 101
++ F S L++ ++ L + A ++F++I + N +MIRGY + N A+S +
Sbjct: 109 SDIFVSSALIVMYSTCGKL--EDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFK 166
Query: 102 NM------KRKGLLVDNYTYPFVLKACGVL--MGLVEGTEIHGEVVKMGFLCDVFVVNGL 153
++ + +D+ V+ AC + GL E IH V+K GF V V N L
Sbjct: 167 DLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTE--SIHSFVIKRGFDRGVSVGNTL 224
Query: 154 IGMYSKCGHMGCA--RSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK---- 207
+ Y+K G G A R +F+ KD VS+N ++ + + G +A EVF + +
Sbjct: 225 LDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVT 284
Query: 208 -DAISWSIMIDGYRKKKGDISSARILFEH---MPIKD-LISWNSMIDGYAKIGDLVAAQQ 262
+AI+ S ++ G + + + + M ++D +I S+ID Y K G + A++
Sbjct: 285 FNAITLSTVLLAV-SHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARK 343
Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
F+ M +NV SW+ MI GY HG+ +AL LF M+ GVRP+ I+ + ++AC+ G
Sbjct: 344 AFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGL 403
Query: 323 LDLG-KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
G +W + R + + ++D+ + G L +A + M K
Sbjct: 404 HVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMK 453
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 313 bits (802), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 179/519 (34%), Positives = 295/519 (56%), Gaps = 14/519 (2%)
Query: 64 QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYV-NMKRKGLLVDNYTYPFVLKAC 122
A R+F+++ ++ +NTMI GY + ++++ ++ N+ + D T VL+AC
Sbjct: 260 DARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQ--FKPDLLTVSSVLRAC 317
Query: 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182
G L L I+ ++K GF+ + V N LI +Y+KCG M AR VF E KD VSWN
Sbjct: 318 GHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWN 377
Query: 183 LVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGYRKKKGDISSARILFEHMPI 238
++ G+++ G++ +A ++F M Q D I++ +M+ + D+ + L + I
Sbjct: 378 SIISGYIQSGDLMEAMKLFKMMMIMEEQADHITY-LMLISVSTRLADLKFGKGLHSN-GI 435
Query: 239 K-----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY 293
K DL N++ID YAK G++ + ++F+ M + +W+ +I + G+ L
Sbjct: 436 KSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQ 495
Query: 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
+ +M V PD+ + + + CA + A LGK IH + R ++ + ALI+MY
Sbjct: 496 VTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYS 555
Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
KCG L+ + R+F M++++V+++ MI GM G GE+AL+ FA ME GI D ++F+
Sbjct: 556 KCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIA 615
Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
++ ACSHSGL EG F+ MK H I+P +EHY+C+VDLLSR+ ++ +A +++MP+K
Sbjct: 616 IIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIK 675
Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
P+ ++W ++L ACR ++ AE V ++EL DD G +L SN YA W+ IR
Sbjct: 676 PDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIR 735
Query: 534 KMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
K ++ + I K G S IE+ N+ F SG+ QSE +
Sbjct: 736 KSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAI 774
Score = 182 bits (462), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 121/418 (28%), Positives = 215/418 (51%), Gaps = 10/418 (2%)
Query: 76 NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
N Y+ N++IR ++++ +AL FY ++ + D YT+P V+KAC L G ++
Sbjct: 70 NVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVY 129
Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
+++ MGF D+FV N L+ MYS+ G + AR VF+ ++DLVSWN ++ G+ G
Sbjct: 130 EQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYE 189
Query: 196 KAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR-------ILFEHMPIKDLISWNSMI 248
+A E++ E+ + S + G++ + + ++ N ++
Sbjct: 190 EALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLV 249
Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
Y K A+++F+EM R+ S++ MI GY + +E++ +F E L Q +PD++
Sbjct: 250 AMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQ-FKPDLL 308
Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
+V + AC + L L K+I+ +M ++ ++ V+ LID+Y KCG + AR +F SM
Sbjct: 309 TVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSM 368
Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
K+ +S+N +I+G +G EA+K F M D + +L +LI+ S +
Sbjct: 369 ECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYL-MLISVSTRLADLKFG 427
Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
+ S GI L + L+D+ ++ GE+ +L I SM + W T++ AC
Sbjct: 428 KGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVT-WNTVISAC 484
Score = 166 bits (419), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 123/433 (28%), Positives = 221/433 (51%), Gaps = 14/433 (3%)
Query: 62 MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
+ +A ++F+++ + N++I GY+ ++AL Y +K ++ D++T VL A
Sbjct: 157 LTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPA 216
Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
G L+ + +G +HG +K G V V NGL+ MY K AR VF+ +++D VS+
Sbjct: 217 FGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSY 276
Query: 182 NLVLRGFVECGEMGKAREVFDE-----MPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236
N ++ G+++ + ++ +F E P +S + G+ + D+S A+ ++ +M
Sbjct: 277 NTMICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLR---DLSLAKYIYNYM 333
Query: 237 PIKDLI----SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
+ N +ID YAK GD++ A+ +FN M ++ SW+ +I GY Q G+ EA+
Sbjct: 334 LKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAM 393
Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352
LF+ M+ + D I+ + IS ++ L GK +H +S I +D+ V ALIDMY
Sbjct: 394 KLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMY 453
Query: 353 MKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL 412
KCG + ++ +IF SM + +++N +I+ G L+ QM + D FL
Sbjct: 454 AKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFL 513
Query: 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472
L C+ G I + R G E +L+ + L+++ S+ G LE + + E M
Sbjct: 514 VTLPMCASLAAKRLGKEIHCCLLRF-GYESELQIGNALIEMYSKCGCLENSSRVFERMSR 572
Query: 473 KPNLALWGTLLLA 485
+ ++ W ++ A
Sbjct: 573 R-DVVTWTGMIYA 584
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/380 (27%), Positives = 186/380 (48%), Gaps = 19/380 (5%)
Query: 116 PFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEG-SE 174
PF+ +A L E IH V+ +G F LI YS + SVF S
Sbjct: 8 PFISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSP 67
Query: 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDG----YRKKKGDI 226
K++ WN ++R F + G +A E + ++ + D ++ +I + + GD+
Sbjct: 68 AKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDL 127
Query: 227 SSARIL---FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYA 283
+IL FE DL N+++D Y+++G L A+Q+F+EMP R++ SW+ +I GY+
Sbjct: 128 VYEQILDMGFE----SDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYS 183
Query: 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI 343
HG +EAL ++ E+ + PD +V + A + + G+ +H F +S + ++
Sbjct: 184 SHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVV 243
Query: 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403
V L+ MY+K +ARR+F M ++ +SYN MI G EE+++ F + +
Sbjct: 244 VNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQF 303
Query: 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463
P D L VL AC H + I+ M + G + + L+D+ ++ G++ A
Sbjct: 304 KP-DLLTVSSVLRACGHLRDLSLAKYIYNYMLK-AGFVLESTVRNILIDVYAKCGDMITA 361
Query: 464 LNIVESMPMKPNLALWGTLL 483
++ SM K ++ W +++
Sbjct: 362 RDVFNSMECKDTVS-WNSII 380
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/375 (24%), Positives = 167/375 (44%), Gaps = 16/375 (4%)
Query: 11 LKNPLVSLLQISKTTTHILQI-LAQLTTNDLITEPFTLSQLLMSL---TSPNTLNMDQAE 66
K L+++ + + H+ + LA+ N ++ F L + ++ +M A
Sbjct: 303 FKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITAR 362
Query: 67 RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
+FN + +T N++I GY QS + +A+ + M D+ TY ++ L
Sbjct: 363 DVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLA 422
Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
L G +H +K G D+ V N LI MY+KCG +G + +F D V+WN V+
Sbjct: 423 DLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVIS 482
Query: 187 GFVECGEMGKAREVFDEMPQKDA--------ISWSIMIDGYRKKKG-DISSARILFEHMP 237
V G+ +V +M + + ++ + K+ G +I + F +
Sbjct: 483 ACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYE- 541
Query: 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
+L N++I+ Y+K G L + ++F M R+V +W+ MI Y +G ++AL F +
Sbjct: 542 -SELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFAD 600
Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA-LIDMYMKCG 356
M G+ PD + + I AC+ G +D G MK MI A ++D+ +
Sbjct: 601 MEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQ 660
Query: 357 SLDEARRIFYSMTKK 371
+ +A +M K
Sbjct: 661 KISKAEEFIQAMPIK 675
>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130
OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1
Length = 689
Score = 313 bits (801), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 182/537 (33%), Positives = 297/537 (55%), Gaps = 23/537 (4%)
Query: 65 AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
A ++F+ + + N + ++ G+ + + + +LS + M R+G+ + +T+ LKACG+
Sbjct: 60 AYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGL 119
Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
L L +G +IHG +K+GF V V N L+ MYSKCG + A VF + L+SWN +
Sbjct: 120 LNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAM 179
Query: 185 LRGFVECGEMGKAREVFDEMPQKD---------------AISWSIMIDGYRKKKGDISSA 229
+ GFV G KA + F M + + A S + MI ++ G + +
Sbjct: 180 IAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRS 239
Query: 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPK 289
H P I+ S++D Y K G L +A++ F+++ E+ + SWS +I GYAQ G
Sbjct: 240 GF---HCPSSATIT-GSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFV 295
Query: 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349
EA+ LF+ + + D ++ I A L GK + + ++ V +++
Sbjct: 296 EAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVV 355
Query: 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
DMY+KCG +DEA + F M K+VIS+ V+I G G +G G+++++ F +M I D++
Sbjct: 356 DMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEV 415
Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469
+L VL ACSHSG+ EG +F + GI+P++EHY+C+VDLL RAG L++A +++++
Sbjct: 416 CYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDT 475
Query: 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529
MP+KPN+ +W TLL CR H ++ L + V + L+ + A + YV++SN+Y AG W
Sbjct: 476 MPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQ 535
Query: 530 LRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586
R++ + +KKE G S +EI+ + F SGE S L VIQ +K R
Sbjct: 536 GNARELGNIKGLKKEAGMSWVEIEREVHFFRSGE----DSHPLTPVIQETLKEAERR 588
Score = 142 bits (358), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 161/314 (51%), Gaps = 15/314 (4%)
Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
+LI+ N +ID Y K + + A ++F+ MPERNV SWS ++ G+ +G+ K +L LF EM
Sbjct: 40 NLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMG 99
Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
QG+ P+ + + AC + AL+ G IH F + M + V +L+DMY KCG ++
Sbjct: 100 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRIN 159
Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK--DDLIFLGVLIA 417
EA ++F + +++IS+N MIAG G+G +AL F M+ I + D+ +L A
Sbjct: 160 EAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKA 219
Query: 418 CSHSGLATEGYRIFQSMKR---HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474
CS +G+ G +I + R HC + LVDL + G L A + + K
Sbjct: 220 CSSTGMIYAGKQIHGFLVRSGFHCPSSATIT--GSLVDLYVKCGYLFSARKAFDQIKEKT 277
Query: 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKA--DDCGLYVLLSNIYADAGMWEHALRI 532
++ W +L+L A + + L EL + D L ++ ++AD + LR
Sbjct: 278 MIS-WSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSII-GVFADFAL----LRQ 331
Query: 533 RKMMRKRKIKKETG 546
K M+ +K +G
Sbjct: 332 GKQMQALAVKLPSG 345
Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/336 (27%), Positives = 170/336 (50%), Gaps = 19/336 (5%)
Query: 62 MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGL--LVDNYTYPFVL 119
+++AE++F +I + N MI G+ + KAL + M+ + D +T +L
Sbjct: 158 INEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLL 217
Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLC--DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKD 177
KAC + G +IHG +V+ GF C + L+ +Y KCG++ AR F+ + K
Sbjct: 218 KACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKT 277
Query: 178 LVSWNLVLRGFVECGEMGKAREVFDEM----PQKDAISWSIMIDGY------RKKKGDIS 227
++SW+ ++ G+ + GE +A +F + Q D+ + S +I + R+ K +
Sbjct: 278 MISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQA 337
Query: 228 SARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGN 287
A L + L NS++D Y K G + A++ F EM ++V SW+++I GY +HG
Sbjct: 338 LAVKLPSGLETSVL---NSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGL 394
Query: 288 PKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA 347
K+++ +F EML + PD + + +SAC+ G + G+ + + + + A
Sbjct: 395 GKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYA 454
Query: 348 -LIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIA 381
++D+ + G L EA+ + +M K NV + +++
Sbjct: 455 CVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLS 490
Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 178/376 (47%), Gaps = 23/376 (6%)
Query: 130 EGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFV 189
+G ++H ++K G ++ N LI MY KC A VF+ +++VSW+ ++ G V
Sbjct: 24 QGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHV 83
Query: 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISS-----------ARILFEHMPI 238
G++ + +F EM ++ K G +++ +I FE M
Sbjct: 84 LNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMM-- 141
Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
+ NS++D Y+K G + A+++F + +R++ SW+ MI G+ G +AL F M
Sbjct: 142 --VEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMM 199
Query: 299 LCQGV--RPDVISVMGAISACAQVGALDLGKWIHVFMKRS--RITMDMIVQTALIDMYMK 354
+ RPD ++ + AC+ G + GK IH F+ RS + +L+D+Y+K
Sbjct: 200 QEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVK 259
Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414
CG L AR+ F + +K +IS++ +I G G EA+ F +++ D +
Sbjct: 260 CGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSI 319
Query: 415 LIACSHSGLATEGYRIFQ-SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
+ + L +G ++ ++K G+E + + +VD+ + G +++A M +K
Sbjct: 320 IGVFADFALLRQGKQMQALAVKLPSGLETSV--LNSVVDMYLKCGLVDEAEKCFAEMQLK 377
Query: 474 PNLALWGTLLLACRNH 489
++ W ++ H
Sbjct: 378 DVIS-WTVVITGYGKH 392
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 93/180 (51%), Gaps = 5/180 (2%)
Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
R +++S++ C + G D G +H ++ +S +++I LIDMY KC A +
Sbjct: 6 RQNLVSIL---RVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYK 62
Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
+F SM ++NV+S++ +++G +NG + +L F++M +GI ++ F L AC
Sbjct: 63 VFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNA 122
Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
+G +I G E +E + LVD+ S+ G + +A + + + +L W ++
Sbjct: 123 LEKGLQI-HGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRI-VDRSLISWNAMI 180
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 311 bits (796), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 177/519 (34%), Positives = 294/519 (56%), Gaps = 15/519 (2%)
Query: 64 QAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123
A LF+++ + N MI GY QS N ++AL+ ++ +D+ T +L AC
Sbjct: 203 NARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLSACT 258
Query: 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNL 183
G IH +K G ++FV N LI +Y++ G + + VF+ ++DL+SWN
Sbjct: 259 EAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNS 318
Query: 184 VLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSAR-----ILFE 234
+++ + + +A +F EM Q D ++ I + + GDI + R L +
Sbjct: 319 IIKAYELNEQPLRAISLFQEMRLSRIQPDCLTL-ISLASILSQLGDIRACRSVQGFTLRK 377
Query: 235 HMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL 294
++D+ N+++ YAK+G + +A+ +FN +P +V SW+ +I GYAQ+G EA+ +
Sbjct: 378 GWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEM 437
Query: 295 FREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353
+ M +G + + + + + AC+Q GAL G +H + ++ + +D+ V T+L DMY
Sbjct: 438 YNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYG 497
Query: 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413
KCG L++A +FY + + N + +N +IA G +G GE+A+ F +M EG+ D + F+
Sbjct: 498 KCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVT 557
Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
+L ACSHSGL EG F+ M+ GI P L+HY C+VD+ RAG+LE AL ++SM ++
Sbjct: 558 LLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQ 617
Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533
P+ ++WG LL ACR H NV L ++ E L E++ + G +VLLSN+YA AG WE IR
Sbjct: 618 PDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIR 677
Query: 534 KMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
+ + ++K G S +E+D ++ F +G EE+
Sbjct: 678 SIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEM 716
Score = 200 bits (508), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 135/479 (28%), Positives = 245/479 (51%), Gaps = 19/479 (3%)
Query: 61 NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALS-FYVNMKRKGLLVDNYTYPFVL 119
N+ A F+ I + Y N MI GY ++ N + + F + M GL D T+P VL
Sbjct: 101 NVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVL 160
Query: 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV 179
KAC + ++G +IH +K GF+ DV+V LI +YS+ +G AR +F+ ++D+
Sbjct: 161 KACRTV---IDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMG 217
Query: 180 SWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARIL----FEH 235
SWN ++ G+ + G +A + + + D+++ ++ + GD + + +H
Sbjct: 218 SWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSAC-TEAGDFNRGVTIHSYSIKH 276
Query: 236 MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295
+L N +ID YA+ G L Q++F+ M R++ SW+ +I Y + P A+ LF
Sbjct: 277 GLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLF 336
Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVF-MKRSRITMDMIVQTALIDMYMK 354
+EM ++PD ++++ S +Q+G + + + F +++ D+ + A++ MY K
Sbjct: 337 QEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAK 396
Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKDDLIFLG 413
G +D AR +F + +VIS+N +I+G NGF EA++ + ME EG I + ++
Sbjct: 397 LGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVS 456
Query: 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMK 473
VL ACS +G +G ++ + ++ G+ + + L D+ + G LE AL++ +P +
Sbjct: 457 VLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-R 514
Query: 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLSNI----YADAGMW 526
N W TL+ H + A ++ + +++ +K D LLS D G W
Sbjct: 515 VNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQW 573
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 135/280 (48%), Gaps = 11/280 (3%)
Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR-EMLCQGVRP 305
+++ Y +G++ A+ F+ + R+V++W++MI GY + GN E + F ML G+ P
Sbjct: 92 LVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTP 151
Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
D + + AC V +D G IH + D+ V +LI +Y + ++ AR +F
Sbjct: 152 DYRTFPSVLKACRTV--ID-GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILF 208
Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
M +++ S+N MI+G +G +EAL + D + + +L AC+ +G
Sbjct: 209 DEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRA----MDSVTVVSLLSACTEAGDFN 264
Query: 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
G I +H G+E +L + L+DL + G L + + M ++ +L W +++ A
Sbjct: 265 RGVTIHSYSIKH-GLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVR-DLISWNSIIKA 322
Query: 486 CR-NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524
N Q + + E + DC + L++I + G
Sbjct: 323 YELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLG 362
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 106/254 (41%), Gaps = 32/254 (12%)
Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
L K +H + S+ ++ + L+++Y G++ AR F + ++V ++N+MI+G
Sbjct: 67 LQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISG 126
Query: 383 LGMNGFGEEALKCFAQ-METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC--- 438
G G E ++CF+ M + G+ D F VL AC + K HC
Sbjct: 127 YGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR---------TVIDGNKIHCLAL 177
Query: 439 --GIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAE 496
G + + L+ L SR + A + + MP++ ++ W ++ N A
Sbjct: 178 KFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVR-DMGSWNAMISGYCQSGNAKEAL 236
Query: 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNI 556
+ G L+A D V L + +AG + + I K ++ E
Sbjct: 237 TLSNG---LRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESEL----------- 282
Query: 557 KEFVSGEIFDVQSE 570
FVS ++ D+ +E
Sbjct: 283 --FVSNKLIDLYAE 294
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 205,229,274
Number of Sequences: 539616
Number of extensions: 8463932
Number of successful extensions: 28362
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 19157
Number of HSP's gapped (non-prelim): 2142
length of query: 586
length of database: 191,569,459
effective HSP length: 123
effective length of query: 463
effective length of database: 125,196,691
effective search space: 57966067933
effective search space used: 57966067933
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)