Query 007871
Match_columns 586
No_of_seqs 569 out of 3364
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 16:27:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.1E-82 4.5E-87 682.0 63.9 575 6-585 149-766 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2.6E-74 5.7E-79 604.8 59.4 512 73-585 83-603 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.3E-71 2.8E-76 598.4 55.9 523 23-552 100-632 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.4E-63 3.1E-68 525.1 54.9 496 41-546 367-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 6.9E-63 1.5E-67 520.0 53.9 493 8-506 369-910 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 8E-59 1.7E-63 487.7 45.1 429 8-442 122-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 6.6E-33 1.4E-37 306.0 55.8 519 10-541 330-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-32 2.4E-37 304.2 56.3 513 14-539 300-832 (899)
9 PRK11447 cellulose synthase su 100.0 1.4E-24 3.1E-29 239.8 57.4 515 14-542 117-744 (1157)
10 PRK11447 cellulose synthase su 100.0 4.5E-24 9.8E-29 235.9 54.8 507 18-537 37-664 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 2E-21 4.4E-26 205.2 54.7 510 9-540 78-707 (987)
12 PRK09782 bacteriophage N4 rece 99.9 7.1E-21 1.5E-25 201.1 57.1 542 22-580 57-721 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 1.5E-22 3.2E-27 190.0 34.1 438 82-528 53-508 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 1.4E-22 3E-27 190.3 24.2 416 117-540 53-486 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 8.6E-20 1.9E-24 189.8 41.0 415 116-540 131-572 (615)
16 PRK11788 tetratricopeptide rep 99.9 8.2E-20 1.8E-24 180.6 29.9 294 250-547 44-355 (389)
17 PRK15174 Vi polysaccharide exp 99.9 1.8E-18 3.9E-23 179.2 38.6 325 179-510 43-386 (656)
18 PRK10049 pgaA outer membrane p 99.9 1.9E-17 4.2E-22 175.3 44.4 392 85-512 23-463 (765)
19 TIGR00990 3a0801s09 mitochondr 99.9 9.4E-18 2E-22 174.6 40.2 422 80-511 130-577 (615)
20 PRK15174 Vi polysaccharide exp 99.9 7.7E-18 1.7E-22 174.5 37.5 324 212-542 45-384 (656)
21 PRK10049 pgaA outer membrane p 99.8 8E-18 1.7E-22 178.2 37.7 384 150-540 18-457 (765)
22 PRK11788 tetratricopeptide rep 99.8 4.8E-18 1E-22 168.0 31.7 279 223-505 48-347 (389)
23 KOG2002 TPR-containing nuclear 99.8 4.4E-17 9.6E-22 161.7 37.6 428 111-542 269-748 (1018)
24 PRK14574 hmsH outer membrane p 99.8 3.3E-16 7.2E-21 162.6 44.8 432 55-513 44-521 (822)
25 KOG2003 TPR repeat-containing 99.8 5.5E-18 1.2E-22 153.9 27.6 473 14-525 206-709 (840)
26 KOG2002 TPR-containing nuclear 99.8 1.5E-16 3.3E-21 157.9 37.1 473 61-542 251-801 (1018)
27 PRK14574 hmsH outer membrane p 99.8 1.3E-14 2.8E-19 150.9 44.2 423 21-470 46-510 (822)
28 KOG0495 HAT repeat protein [RN 99.8 2.6E-13 5.7E-18 129.4 47.4 507 24-553 361-892 (913)
29 KOG4422 Uncharacterized conser 99.7 6.5E-14 1.4E-18 126.9 35.2 296 12-338 119-464 (625)
30 KOG2003 TPR repeat-containing 99.7 1.6E-14 3.4E-19 131.7 27.2 443 84-539 208-689 (840)
31 KOG2076 RNA polymerase III tra 99.7 1.4E-12 3E-17 129.4 41.6 519 15-538 145-768 (895)
32 KOG0495 HAT repeat protein [RN 99.7 4.4E-12 9.6E-17 121.2 43.1 480 23-520 390-895 (913)
33 KOG4422 Uncharacterized conser 99.7 2.7E-12 5.9E-17 116.6 36.7 418 77-544 116-595 (625)
34 PF13429 TPR_15: Tetratricopep 99.7 1.9E-16 4.1E-21 148.1 10.5 258 277-538 13-276 (280)
35 KOG0547 Translocase of outer m 99.7 6E-13 1.3E-17 122.8 31.7 215 318-538 337-565 (606)
36 KOG1915 Cell cycle control pro 99.7 5.5E-12 1.2E-16 116.1 36.4 454 43-505 72-585 (677)
37 KOG1155 Anaphase-promoting com 99.7 1.6E-12 3.5E-17 119.3 32.8 314 221-538 175-494 (559)
38 KOG1915 Cell cycle control pro 99.6 5E-12 1.1E-16 116.3 32.5 454 75-539 71-585 (677)
39 KOG2076 RNA polymerase III tra 99.6 2.4E-12 5.1E-17 127.8 30.8 312 224-538 153-511 (895)
40 PRK10747 putative protoheme IX 99.6 4.7E-12 1E-16 124.0 32.6 214 316-537 162-388 (398)
41 KOG1126 DNA-binding cell divis 99.6 3.5E-13 7.7E-18 129.4 22.7 275 255-538 333-619 (638)
42 KOG1126 DNA-binding cell divis 99.6 3.4E-13 7.3E-18 129.6 22.1 279 287-572 334-627 (638)
43 PRK10747 putative protoheme IX 99.6 3.2E-12 7E-17 125.1 29.6 278 222-506 96-391 (398)
44 KOG2047 mRNA splicing factor [ 99.6 1E-09 2.2E-14 105.2 42.7 502 15-527 108-711 (835)
45 TIGR00540 hemY_coli hemY prote 99.6 2.1E-11 4.5E-16 120.1 33.0 275 223-502 97-396 (409)
46 KOG1155 Anaphase-promoting com 99.5 7.7E-11 1.7E-15 108.5 32.5 352 175-538 161-535 (559)
47 KOG1173 Anaphase-promoting com 99.5 3.4E-10 7.5E-15 107.0 35.6 262 272-538 244-517 (611)
48 TIGR00540 hemY_coli hemY prote 99.5 3.2E-11 6.9E-16 118.9 30.4 282 251-538 94-398 (409)
49 PF13429 TPR_15: Tetratricopep 99.5 8.1E-14 1.7E-18 130.4 11.0 251 246-504 13-276 (280)
50 KOG4318 Bicoid mRNA stability 99.5 5.1E-11 1.1E-15 118.0 30.1 441 73-543 21-598 (1088)
51 COG3071 HemY Uncharacterized e 99.5 4.2E-10 9.1E-15 102.2 30.8 276 223-505 97-390 (400)
52 KOG1173 Anaphase-promoting com 99.5 5.7E-10 1.2E-14 105.5 31.9 481 24-522 31-535 (611)
53 TIGR02521 type_IV_pilW type IV 99.4 6.6E-11 1.4E-15 108.0 23.5 197 342-539 31-232 (234)
54 COG3071 HemY Uncharacterized e 99.4 3.5E-10 7.7E-15 102.6 26.6 283 253-543 96-394 (400)
55 KOG2376 Signal recognition par 99.4 4E-09 8.7E-14 100.4 34.7 432 86-534 21-515 (652)
56 KOG0547 Translocase of outer m 99.4 4.5E-10 9.8E-15 104.2 27.7 408 80-506 118-567 (606)
57 COG2956 Predicted N-acetylgluc 99.4 1.6E-10 3.5E-15 101.6 23.5 221 91-336 49-278 (389)
58 KOG4162 Predicted calmodulin-b 99.4 1.5E-09 3.2E-14 106.6 31.6 390 140-539 316-783 (799)
59 COG2956 Predicted N-acetylgluc 99.4 1.5E-09 3.2E-14 95.7 25.8 214 191-436 48-277 (389)
60 KOG1840 Kinesin light chain [C 99.4 3.3E-10 7.1E-15 110.4 24.3 240 274-539 201-479 (508)
61 KOG3785 Uncharacterized conser 99.4 9.6E-09 2.1E-13 91.6 30.7 432 60-509 36-494 (557)
62 KOG1129 TPR repeat-containing 99.3 2.1E-10 4.6E-15 100.8 18.0 225 312-541 228-460 (478)
63 PRK12370 invasion protein regu 99.3 1.1E-09 2.4E-14 112.2 25.9 243 287-540 276-536 (553)
64 KOG4318 Bicoid mRNA stability 99.3 2.4E-08 5.1E-13 99.6 33.4 262 30-321 11-285 (1088)
65 KOG2047 mRNA splicing factor [ 99.3 2E-07 4.4E-12 89.9 38.1 480 54-542 111-690 (835)
66 KOG1129 TPR repeat-containing 99.3 1.4E-10 3.1E-15 101.9 14.9 235 276-515 227-468 (478)
67 TIGR02521 type_IV_pilW type IV 99.3 2.5E-09 5.4E-14 97.5 23.8 199 272-505 31-232 (234)
68 COG3063 PilF Tfp pilus assembl 99.3 7.5E-10 1.6E-14 93.0 17.6 162 376-541 38-204 (250)
69 KOG1174 Anaphase-promoting com 99.2 9.8E-08 2.1E-12 87.2 31.6 271 238-514 229-509 (564)
70 PRK12370 invasion protein regu 99.2 2.3E-09 5E-14 109.9 23.7 212 321-539 275-502 (553)
71 PF13041 PPR_2: PPR repeat fam 99.2 1.4E-11 3.1E-16 80.3 4.9 50 75-124 1-50 (50)
72 KOG3785 Uncharacterized conser 99.2 2.4E-08 5.2E-13 89.2 26.0 445 84-543 29-494 (557)
73 PRK11189 lipoprotein NlpI; Pro 99.2 2.4E-09 5.2E-14 100.3 20.7 227 285-519 39-280 (296)
74 PF13041 PPR_2: PPR repeat fam 99.2 6.7E-11 1.5E-15 77.2 6.6 50 270-319 1-50 (50)
75 KOG1156 N-terminal acetyltrans 99.2 2.8E-07 6.1E-12 89.2 32.9 409 125-541 20-470 (700)
76 KOG1174 Anaphase-promoting com 99.2 4.8E-07 1E-11 82.8 32.6 386 146-539 96-500 (564)
77 KOG4162 Predicted calmodulin-b 99.2 1.8E-06 3.8E-11 85.6 38.4 400 106-511 317-789 (799)
78 PRK11189 lipoprotein NlpI; Pro 99.1 3.2E-08 6.9E-13 92.8 24.5 213 322-541 41-267 (296)
79 COG3063 PilF Tfp pilus assembl 99.1 2.3E-08 5E-13 84.3 20.2 192 345-538 38-235 (250)
80 KOG1156 N-terminal acetyltrans 99.1 3.8E-06 8.3E-11 81.6 37.0 210 23-237 21-246 (700)
81 KOG3617 WD40 and TPR repeat-co 99.1 1.5E-06 3.2E-11 86.4 34.9 371 43-461 725-1188(1416)
82 KOG0985 Vesicle coat protein c 99.1 4.9E-06 1.1E-10 84.6 38.5 459 47-536 609-1246(1666)
83 KOG2376 Signal recognition par 99.1 1.5E-06 3.3E-11 83.4 33.3 412 119-541 19-489 (652)
84 KOG3616 Selective LIM binding 99.1 6.8E-07 1.5E-11 87.6 31.0 461 23-543 504-1028(1636)
85 KOG0624 dsRNA-activated protei 99.1 6.9E-07 1.5E-11 79.8 27.5 196 312-511 160-376 (504)
86 KOG0548 Molecular co-chaperone 99.1 3.9E-07 8.4E-12 86.5 27.4 236 276-523 228-473 (539)
87 KOG1840 Kinesin light chain [C 99.0 5.4E-08 1.2E-12 95.2 22.4 235 242-504 200-478 (508)
88 PF12569 NARP1: NMDA receptor- 99.0 1.3E-07 2.9E-12 93.7 25.5 148 391-541 129-293 (517)
89 KOG0985 Vesicle coat protein c 99.0 7.6E-06 1.6E-10 83.3 37.4 461 23-530 852-1374(1666)
90 PF12569 NARP1: NMDA receptor- 99.0 3.9E-07 8.4E-12 90.4 28.6 241 221-470 15-288 (517)
91 KOG0548 Molecular co-chaperone 99.0 5E-07 1.1E-11 85.7 27.1 232 244-488 227-471 (539)
92 PF04733 Coatomer_E: Coatomer 99.0 2.2E-08 4.8E-13 92.3 17.0 250 251-512 11-272 (290)
93 KOG1127 TPR repeat-containing 99.0 7.8E-07 1.7E-11 90.2 28.6 277 258-538 800-1103(1238)
94 KOG4340 Uncharacterized conser 99.0 1.1E-06 2.5E-11 76.9 25.9 420 106-543 4-447 (459)
95 cd05804 StaR_like StaR_like; a 99.0 1.9E-06 4.2E-11 84.0 30.9 297 241-540 6-337 (355)
96 KOG3616 Selective LIM binding 99.0 4.3E-06 9.3E-11 82.2 31.9 43 60-102 458-502 (1636)
97 PF04733 Coatomer_E: Coatomer 99.0 1.8E-08 3.9E-13 92.9 14.4 245 280-539 9-265 (290)
98 PRK04841 transcriptional regul 99.0 0.00012 2.6E-09 81.2 47.2 259 282-540 462-761 (903)
99 KOG1125 TPR repeat-containing 99.0 3.3E-08 7.2E-13 94.3 16.3 116 424-539 410-527 (579)
100 KOG3617 WD40 and TPR repeat-co 98.9 1.1E-05 2.4E-10 80.5 32.8 257 76-368 725-993 (1416)
101 TIGR03302 OM_YfiO outer membra 98.9 1.8E-07 3.9E-12 85.2 18.0 180 341-539 32-232 (235)
102 KOG1127 TPR repeat-containing 98.9 4.2E-06 9.1E-11 85.2 28.0 441 78-537 493-994 (1238)
103 PRK10370 formate-dependent nit 98.9 3.4E-07 7.3E-12 79.8 18.3 149 380-542 23-176 (198)
104 KOG0624 dsRNA-activated protei 98.8 9.8E-06 2.1E-10 72.6 26.3 301 147-470 38-367 (504)
105 cd05804 StaR_like StaR_like; a 98.8 1.6E-05 3.4E-10 77.7 30.0 20 486-505 317-336 (355)
106 KOG4340 Uncharacterized conser 98.8 3.9E-06 8.5E-11 73.6 22.3 282 80-369 13-337 (459)
107 KOG1125 TPR repeat-containing 98.8 4.1E-07 8.9E-12 87.1 17.8 249 280-532 293-564 (579)
108 PRK15359 type III secretion sy 98.7 3.2E-07 7E-12 75.5 13.8 121 394-520 14-136 (144)
109 KOG1070 rRNA processing protei 98.7 1.6E-06 3.5E-11 91.0 21.3 203 339-545 1455-1669(1710)
110 PRK15359 type III secretion sy 98.7 8.1E-07 1.8E-11 73.1 15.6 107 429-540 14-122 (144)
111 KOG1914 mRNA cleavage and poly 98.7 0.00032 6.9E-09 67.2 32.0 130 41-175 17-165 (656)
112 COG5010 TadD Flp pilus assembl 98.7 4.7E-06 1E-10 72.3 18.3 154 377-533 70-225 (257)
113 PRK15179 Vi polysaccharide bio 98.6 3.6E-06 7.7E-11 87.0 20.6 171 371-551 84-257 (694)
114 PLN02789 farnesyltranstransfer 98.6 1.4E-05 3E-10 75.0 22.0 155 390-549 125-310 (320)
115 KOG1128 Uncharacterized conser 98.6 2.5E-06 5.4E-11 84.0 17.4 216 309-542 400-619 (777)
116 COG5010 TadD Flp pilus assembl 98.6 4E-06 8.6E-11 72.7 16.7 136 404-541 62-199 (257)
117 KOG3060 Uncharacterized conser 98.6 4.7E-06 1E-10 71.6 16.5 82 386-470 99-180 (289)
118 KOG3081 Vesicle coat complex C 98.6 8.4E-05 1.8E-09 64.6 23.6 173 331-510 97-276 (299)
119 PRK14720 transcript cleavage f 98.6 1.6E-05 3.5E-10 83.1 23.2 254 239-544 29-289 (906)
120 PRK04841 transcriptional regul 98.6 0.00021 4.5E-09 79.3 33.8 397 25-436 291-759 (903)
121 PRK10370 formate-dependent nit 98.6 1E-05 2.2E-10 70.5 18.5 154 349-513 23-181 (198)
122 PRK15363 pathogenicity island 98.6 7.1E-06 1.5E-10 66.3 15.7 120 443-585 34-155 (157)
123 TIGR02552 LcrH_SycD type III s 98.5 3.5E-06 7.7E-11 69.1 14.1 97 443-539 16-114 (135)
124 TIGR03302 OM_YfiO outer membra 98.5 6.7E-06 1.5E-10 74.8 17.0 183 304-507 30-234 (235)
125 KOG1128 Uncharacterized conser 98.5 6.9E-06 1.5E-10 81.0 17.1 213 277-506 403-617 (777)
126 KOG1914 mRNA cleavage and poly 98.5 0.0014 3E-08 63.1 32.7 77 109-187 17-95 (656)
127 PF12854 PPR_1: PPR repeat 98.5 1.9E-07 4.1E-12 54.4 3.7 32 142-173 2-33 (34)
128 KOG1070 rRNA processing protei 98.5 4E-05 8.6E-10 81.1 22.7 230 196-427 1443-1690(1710)
129 KOG3060 Uncharacterized conser 98.4 9.3E-05 2E-09 63.8 20.3 171 376-550 55-231 (289)
130 PRK15179 Vi polysaccharide bio 98.4 5.7E-05 1.2E-09 78.3 22.9 141 338-482 82-228 (694)
131 KOG3081 Vesicle coat complex C 98.4 0.00013 2.8E-09 63.5 20.8 239 223-470 21-268 (299)
132 KOG2053 Mitochondrial inherita 98.4 0.0037 7.9E-08 64.0 36.0 113 23-140 23-138 (932)
133 COG4783 Putative Zn-dependent 98.4 5.1E-05 1.1E-09 71.9 19.5 113 419-533 317-431 (484)
134 PLN02789 farnesyltranstransfer 98.4 0.00047 1E-08 64.8 25.7 235 275-515 40-312 (320)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 9.6E-06 2.1E-10 77.5 14.3 123 410-537 171-295 (395)
136 PF12854 PPR_1: PPR repeat 98.4 8.4E-07 1.8E-11 51.7 4.3 32 337-368 2-33 (34)
137 TIGR02552 LcrH_SycD type III s 98.4 1.7E-05 3.7E-10 64.9 13.8 116 395-514 5-123 (135)
138 COG4783 Putative Zn-dependent 98.3 0.00012 2.6E-09 69.4 20.3 146 375-541 308-456 (484)
139 PRK14720 transcript cleavage f 98.3 0.0002 4.2E-09 75.2 23.2 150 274-455 118-268 (906)
140 KOG2053 Mitochondrial inherita 98.3 0.0063 1.4E-07 62.4 33.9 386 157-548 19-511 (932)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.8E-05 6.2E-10 74.3 15.7 128 344-474 171-298 (395)
142 PF09976 TPR_21: Tetratricopep 98.2 5.9E-05 1.3E-09 62.4 14.3 113 421-536 24-144 (145)
143 KOG0553 TPR repeat-containing 98.1 2.2E-05 4.7E-10 69.7 10.4 106 415-522 88-195 (304)
144 PF12895 Apc3: Anaphase-promot 98.1 3.5E-06 7.6E-11 62.2 4.6 78 457-535 2-83 (84)
145 PLN03088 SGT1, suppressor of 98.1 5.8E-05 1.3E-09 72.7 14.1 105 414-520 8-114 (356)
146 cd00189 TPR Tetratricopeptide 98.1 4.4E-05 9.6E-10 57.8 10.3 93 447-539 3-97 (100)
147 TIGR02795 tol_pal_ybgF tol-pal 98.1 7.6E-05 1.7E-09 59.5 11.8 93 447-539 5-105 (119)
148 PF09976 TPR_21: Tetratricopep 98.1 0.00039 8.5E-09 57.5 16.2 124 376-502 15-144 (145)
149 PF13414 TPR_11: TPR repeat; P 98.1 1.2E-05 2.7E-10 56.7 6.1 65 475-539 2-67 (69)
150 TIGR02795 tol_pal_ybgF tol-pal 98.0 7.9E-05 1.7E-09 59.4 11.3 106 410-515 4-115 (119)
151 PF13432 TPR_16: Tetratricopep 98.0 1.5E-05 3.3E-10 55.3 6.0 58 482-539 3-60 (65)
152 TIGR00756 PPR pentatricopeptid 98.0 8.6E-06 1.9E-10 48.3 4.0 34 79-112 2-35 (35)
153 PF14559 TPR_19: Tetratricopep 98.0 1.7E-05 3.6E-10 55.8 6.0 53 487-539 2-54 (68)
154 KOG0550 Molecular chaperone (D 98.0 0.00078 1.7E-08 62.5 17.7 154 381-539 177-350 (486)
155 PF13812 PPR_3: Pentatricopept 98.0 9.3E-06 2E-10 47.8 3.8 33 78-110 2-34 (34)
156 KOG0553 TPR repeat-containing 98.0 8.3E-05 1.8E-09 66.1 10.6 156 380-545 88-251 (304)
157 TIGR00756 PPR pentatricopeptid 97.9 1.9E-05 4.1E-10 46.8 4.3 33 375-407 2-34 (35)
158 PF13812 PPR_3: Pentatricopept 97.9 2.1E-05 4.6E-10 46.2 4.2 33 273-305 2-34 (34)
159 COG4235 Cytochrome c biogenesi 97.9 0.00041 8.9E-09 62.2 13.9 107 440-546 152-263 (287)
160 PLN03088 SGT1, suppressor of 97.9 0.00027 5.9E-09 68.0 13.7 102 379-483 8-110 (356)
161 PRK02603 photosystem I assembl 97.8 0.00026 5.6E-09 60.6 11.3 81 445-525 36-121 (172)
162 cd00189 TPR Tetratricopeptide 97.8 0.00032 6.9E-09 53.0 10.3 90 416-507 8-99 (100)
163 PRK02603 photosystem I assembl 97.8 0.00093 2E-08 57.2 13.8 131 372-525 34-166 (172)
164 PF13371 TPR_9: Tetratricopept 97.8 9.9E-05 2.2E-09 52.7 6.5 58 484-541 3-60 (73)
165 KOG2041 WD40 repeat protein [G 97.7 0.063 1.4E-06 53.7 27.7 231 144-401 689-951 (1189)
166 PF12895 Apc3: Anaphase-promot 97.7 0.00011 2.4E-09 54.1 6.4 80 386-468 2-82 (84)
167 CHL00033 ycf3 photosystem I as 97.7 0.00042 9E-09 59.1 10.9 94 443-536 34-139 (168)
168 COG4700 Uncharacterized protei 97.7 0.0041 8.8E-08 51.3 15.3 134 404-539 85-222 (251)
169 PRK15331 chaperone protein Sic 97.7 0.003 6.6E-08 51.6 14.5 90 449-538 42-133 (165)
170 PRK10153 DNA-binding transcrip 97.7 0.0023 5E-08 64.5 16.7 139 370-510 334-487 (517)
171 PF13432 TPR_16: Tetratricopep 97.6 0.00016 3.5E-09 50.1 6.0 61 450-510 3-65 (65)
172 KOG1130 Predicted G-alpha GTPa 97.6 0.00057 1.2E-08 63.2 10.6 131 409-539 196-344 (639)
173 PF04840 Vps16_C: Vps16, C-ter 97.6 0.067 1.4E-06 50.3 27.2 106 348-470 183-288 (319)
174 PF10037 MRP-S27: Mitochondria 97.6 0.0011 2.4E-08 64.0 12.7 118 41-160 63-186 (429)
175 PF01535 PPR: PPR repeat; Int 97.6 8.4E-05 1.8E-09 42.5 3.3 29 79-107 2-30 (31)
176 PF14938 SNAP: Soluble NSF att 97.6 0.0098 2.1E-07 55.5 18.8 168 275-470 38-222 (282)
177 PF07079 DUF1347: Protein of u 97.6 0.077 1.7E-06 50.5 35.0 116 418-536 389-521 (549)
178 KOG0543 FKBP-type peptidyl-pro 97.6 0.00064 1.4E-08 63.3 10.3 84 476-585 257-340 (397)
179 PF05843 Suf: Suppressor of fo 97.6 0.003 6.6E-08 58.6 14.9 135 374-511 2-142 (280)
180 PRK10153 DNA-binding transcrip 97.5 0.0044 9.6E-08 62.5 16.7 138 402-542 331-485 (517)
181 PRK15363 pathogenicity island 97.5 0.0025 5.3E-08 51.8 11.9 91 375-469 37-128 (157)
182 CHL00033 ycf3 photosystem I as 97.5 0.007 1.5E-07 51.5 15.6 80 374-455 36-117 (168)
183 PF14559 TPR_19: Tetratricopep 97.5 0.0002 4.4E-09 50.2 4.7 49 420-470 3-51 (68)
184 PF01535 PPR: PPR repeat; Int 97.5 0.00016 3.5E-09 41.2 3.4 29 274-302 2-30 (31)
185 PF08579 RPM2: Mitochondrial r 97.4 0.00096 2.1E-08 50.1 7.9 80 80-159 28-116 (120)
186 PF08579 RPM2: Mitochondrial r 97.4 0.0022 4.7E-08 48.3 9.5 81 274-354 27-116 (120)
187 PF13431 TPR_17: Tetratricopep 97.4 0.0001 2.3E-09 42.8 2.2 34 498-531 1-34 (34)
188 KOG2041 WD40 repeat protein [G 97.4 0.06 1.3E-06 53.9 21.5 330 60-436 748-1085(1189)
189 PF05843 Suf: Suppressor of fo 97.4 0.0022 4.8E-08 59.6 11.6 129 409-539 2-136 (280)
190 PF13414 TPR_11: TPR repeat; P 97.4 0.00049 1.1E-08 48.4 5.7 65 443-507 2-69 (69)
191 PF12688 TPR_5: Tetratrico pep 97.4 0.0024 5.2E-08 50.0 9.7 55 415-470 8-64 (120)
192 PF12688 TPR_5: Tetratrico pep 97.4 0.0054 1.2E-07 48.0 11.6 90 378-469 6-100 (120)
193 PF14938 SNAP: Soluble NSF att 97.3 0.015 3.3E-07 54.2 16.8 126 410-535 116-262 (282)
194 PRK10866 outer membrane biogen 97.3 0.032 6.9E-07 50.5 18.2 171 348-537 38-239 (243)
195 PRK10803 tol-pal system protei 97.3 0.0021 4.5E-08 58.6 10.5 84 455-538 154-245 (263)
196 PF07079 DUF1347: Protein of u 97.3 0.16 3.5E-06 48.5 34.7 442 18-480 15-529 (549)
197 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.18 3.9E-06 48.0 29.7 135 372-509 396-535 (660)
198 COG4700 Uncharacterized protei 97.3 0.048 1.1E-06 45.2 16.1 124 339-467 86-216 (251)
199 KOG2796 Uncharacterized conser 97.2 0.024 5.2E-07 49.7 15.2 131 377-508 181-318 (366)
200 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.0017 3.7E-08 62.1 8.9 65 475-539 74-141 (453)
201 PF13281 DUF4071: Domain of un 97.2 0.08 1.7E-06 50.3 19.8 161 347-510 146-339 (374)
202 PRK10803 tol-pal system protei 97.2 0.0086 1.9E-07 54.6 13.0 101 410-512 145-253 (263)
203 PF13428 TPR_14: Tetratricopep 97.2 0.00069 1.5E-08 42.3 4.1 42 477-518 2-43 (44)
204 PF10037 MRP-S27: Mitochondria 97.2 0.0094 2E-07 57.7 13.6 118 303-420 62-185 (429)
205 KOG2796 Uncharacterized conser 97.1 0.024 5.3E-07 49.6 14.2 170 241-412 136-323 (366)
206 KOG0550 Molecular chaperone (D 97.1 0.023 5E-07 53.2 14.2 173 350-525 177-372 (486)
207 PRK10866 outer membrane biogen 97.1 0.22 4.7E-06 45.1 20.5 58 278-337 38-99 (243)
208 PF13424 TPR_12: Tetratricopep 97.0 0.0013 2.9E-08 47.5 5.0 62 477-538 6-74 (78)
209 COG4235 Cytochrome c biogenesi 97.0 0.051 1.1E-06 49.1 15.6 107 405-513 153-264 (287)
210 PF09205 DUF1955: Domain of un 97.0 0.11 2.4E-06 40.4 15.4 141 383-542 12-152 (161)
211 PF13371 TPR_9: Tetratricopept 97.0 0.0032 6.9E-08 44.8 6.5 65 452-516 3-69 (73)
212 KOG2280 Vacuolar assembly/sort 97.0 0.54 1.2E-05 48.0 33.1 321 182-533 441-793 (829)
213 COG3898 Uncharacterized membra 96.9 0.35 7.6E-06 45.3 27.2 244 282-539 130-392 (531)
214 KOG0543 FKBP-type peptidyl-pro 96.9 0.017 3.8E-07 54.1 12.3 96 445-540 258-356 (397)
215 PF06239 ECSIT: Evolutionarily 96.9 0.012 2.5E-07 50.4 10.1 87 270-356 45-152 (228)
216 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.44 9.5E-06 45.6 25.4 127 409-537 398-529 (660)
217 PF13525 YfiO: Outer membrane 96.8 0.069 1.5E-06 47.0 15.2 49 482-530 147-198 (203)
218 KOG1538 Uncharacterized conser 96.8 0.097 2.1E-06 52.0 16.4 22 280-301 825-846 (1081)
219 KOG1538 Uncharacterized conser 96.8 0.097 2.1E-06 52.0 16.4 175 275-471 601-800 (1081)
220 COG3118 Thioredoxin domain-con 96.7 0.029 6.3E-07 50.4 11.7 120 417-539 143-265 (304)
221 PF06239 ECSIT: Evolutionarily 96.7 0.025 5.3E-07 48.5 10.6 96 363-459 35-153 (228)
222 PF13512 TPR_18: Tetratricopep 96.7 0.047 1E-06 43.7 11.6 89 450-538 16-127 (142)
223 PRK11619 lytic murein transgly 96.7 1.1 2.3E-05 47.1 33.6 95 225-321 81-177 (644)
224 COG3898 Uncharacterized membra 96.7 0.57 1.2E-05 44.0 25.2 280 80-369 85-390 (531)
225 PF03704 BTAD: Bacterial trans 96.7 0.0093 2E-07 49.4 8.0 68 478-545 64-136 (146)
226 PF13424 TPR_12: Tetratricopep 96.6 0.0034 7.4E-08 45.3 4.5 59 446-504 7-74 (78)
227 KOG4234 TPR repeat-containing 96.6 0.015 3.3E-07 48.6 8.3 88 452-539 103-197 (271)
228 KOG1130 Predicted G-alpha GTPa 96.6 0.012 2.6E-07 54.8 8.3 128 273-400 196-342 (639)
229 KOG1258 mRNA processing protei 96.4 1.1 2.5E-05 44.6 30.0 181 342-524 297-489 (577)
230 COG1729 Uncharacterized protei 96.4 0.046 1E-06 48.7 10.7 93 419-513 152-252 (262)
231 PF13525 YfiO: Outer membrane 96.4 0.63 1.4E-05 40.9 19.2 177 278-463 11-197 (203)
232 KOG1941 Acetylcholine receptor 96.3 0.066 1.4E-06 49.3 11.3 162 375-536 85-272 (518)
233 PF10300 DUF3808: Protein of u 96.2 0.3 6.4E-06 49.2 17.0 117 421-539 246-376 (468)
234 KOG1258 mRNA processing protei 96.2 1.5 3.2E-05 43.9 24.8 120 409-530 298-420 (577)
235 KOG2280 Vacuolar assembly/sort 96.2 1.7 3.7E-05 44.5 32.2 335 104-469 424-795 (829)
236 COG3118 Thioredoxin domain-con 96.2 0.55 1.2E-05 42.6 16.3 172 359-533 120-295 (304)
237 PRK15331 chaperone protein Sic 96.2 0.13 2.7E-06 42.4 11.4 92 380-474 44-135 (165)
238 PF04840 Vps16_C: Vps16, C-ter 96.2 1.2 2.5E-05 42.2 27.4 109 410-535 179-287 (319)
239 KOG2066 Vacuolar assembly/sort 96.1 2 4.3E-05 44.4 25.0 74 411-496 637-710 (846)
240 COG1729 Uncharacterized protei 96.1 0.051 1.1E-06 48.5 9.6 93 446-539 144-244 (262)
241 KOG1920 IkappaB kinase complex 96.1 2.7 5.8E-05 45.7 25.1 54 184-237 683-743 (1265)
242 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.047 1E-06 52.6 9.5 63 443-505 74-141 (453)
243 PF03704 BTAD: Bacterial trans 96.0 0.083 1.8E-06 43.7 10.2 72 375-447 64-139 (146)
244 PF12921 ATP13: Mitochondrial 95.9 0.13 2.8E-06 40.8 10.3 50 404-453 48-97 (126)
245 PF13281 DUF4071: Domain of un 95.9 1.2 2.6E-05 42.6 18.2 75 243-317 143-227 (374)
246 KOG2610 Uncharacterized conser 95.9 0.36 7.9E-06 44.2 13.8 161 384-547 114-284 (491)
247 PRK11906 transcriptional regul 95.7 0.23 5E-06 48.1 12.8 143 388-533 273-430 (458)
248 smart00299 CLH Clathrin heavy 95.7 0.78 1.7E-05 37.5 14.6 126 377-522 11-137 (140)
249 PRK11906 transcriptional regul 95.7 0.65 1.4E-05 45.2 15.5 140 358-501 274-432 (458)
250 PF13512 TPR_18: Tetratricopep 95.6 0.41 8.9E-06 38.4 11.9 117 379-512 16-135 (142)
251 KOG1920 IkappaB kinase complex 95.6 2.9 6.2E-05 45.5 21.1 159 192-370 894-1054(1265)
252 COG0457 NrfG FOG: TPR repeat [ 95.5 1.7 3.7E-05 38.9 27.1 84 454-537 177-263 (291)
253 PF04053 Coatomer_WDAD: Coatom 95.4 0.77 1.7E-05 45.6 15.7 152 157-330 271-425 (443)
254 PF07719 TPR_2: Tetratricopept 95.3 0.056 1.2E-06 31.2 4.6 32 478-509 3-34 (34)
255 COG4105 ComL DNA uptake lipopr 95.3 2.1 4.5E-05 38.2 20.1 57 482-538 173-232 (254)
256 COG0457 NrfG FOG: TPR repeat [ 95.2 2.1 4.6E-05 38.2 25.9 198 307-508 59-268 (291)
257 KOG1941 Acetylcholine receptor 95.1 2.1 4.5E-05 40.0 16.0 53 417-469 215-271 (518)
258 KOG1585 Protein required for f 94.9 2.4 5.3E-05 37.3 16.8 25 275-299 34-58 (308)
259 KOG4555 TPR repeat-containing 94.9 0.37 8.1E-06 37.5 9.1 90 417-508 52-147 (175)
260 PF00515 TPR_1: Tetratricopept 94.9 0.059 1.3E-06 31.2 4.0 31 478-508 3-33 (34)
261 PF04053 Coatomer_WDAD: Coatom 94.9 1.3 2.9E-05 43.9 15.5 158 185-368 268-428 (443)
262 PF10300 DUF3808: Protein of u 94.9 1 2.3E-05 45.3 15.1 116 387-504 247-375 (468)
263 PF04184 ST7: ST7 protein; In 94.8 3.9 8.4E-05 40.2 17.7 59 412-470 263-321 (539)
264 KOG2610 Uncharacterized conser 94.8 0.71 1.5E-05 42.4 12.1 156 354-512 115-285 (491)
265 PF12921 ATP13: Mitochondrial 94.7 0.44 9.5E-06 37.8 9.7 94 407-518 1-96 (126)
266 smart00299 CLH Clathrin heavy 94.7 1.4 3.1E-05 35.9 13.2 87 11-103 9-95 (140)
267 KOG4555 TPR repeat-containing 94.5 0.23 5E-06 38.6 7.2 89 381-470 51-141 (175)
268 KOG2114 Vacuolar assembly/sort 94.5 7.4 0.00016 40.8 28.2 172 54-239 343-519 (933)
269 KOG1586 Protein required for f 94.4 1.9 4.1E-05 37.7 13.1 78 449-526 118-204 (288)
270 COG3629 DnrI DNA-binding trans 94.4 0.24 5.3E-06 45.0 8.3 57 481-537 158-214 (280)
271 PF13176 TPR_7: Tetratricopept 94.1 0.11 2.4E-06 30.6 3.8 26 512-537 1-26 (36)
272 COG4785 NlpI Lipoprotein NlpI, 94.0 3.6 7.9E-05 35.5 14.4 161 373-540 99-267 (297)
273 PF04184 ST7: ST7 protein; In 94.0 2.6 5.6E-05 41.4 14.6 62 480-541 263-326 (539)
274 KOG3941 Intermediate in Toll s 94.0 0.58 1.3E-05 41.9 9.5 88 270-357 65-173 (406)
275 PF07035 Mic1: Colon cancer-as 94.0 1.7 3.6E-05 36.3 11.7 115 97-219 14-130 (167)
276 PF02259 FAT: FAT domain; Int 93.9 6.5 0.00014 38.1 20.4 150 371-523 144-305 (352)
277 KOG1585 Protein required for f 93.8 4.4 9.5E-05 35.8 16.2 199 309-532 33-249 (308)
278 COG4649 Uncharacterized protei 93.8 2.8 6.2E-05 34.7 12.4 121 21-142 70-197 (221)
279 KOG4648 Uncharacterized conser 93.7 0.27 5.9E-06 45.1 7.2 96 415-512 104-201 (536)
280 KOG3941 Intermediate in Toll s 93.7 0.89 1.9E-05 40.7 10.1 99 361-460 53-174 (406)
281 PRK09687 putative lyase; Provi 93.2 7 0.00015 36.3 26.0 74 238-316 203-276 (280)
282 PF02259 FAT: FAT domain; Int 93.2 6.4 0.00014 38.1 16.9 69 474-542 144-216 (352)
283 PF13428 TPR_14: Tetratricopep 93.1 0.22 4.7E-06 30.9 4.3 25 377-401 5-29 (44)
284 KOG2114 Vacuolar assembly/sort 93.1 5.8 0.00013 41.6 16.0 176 311-502 338-516 (933)
285 PRK15180 Vi polysaccharide bio 93.0 1.8 3.8E-05 42.0 11.6 129 420-550 301-431 (831)
286 PF13181 TPR_8: Tetratricopept 92.8 0.23 5.1E-06 28.5 3.9 31 478-508 3-33 (34)
287 PF09613 HrpB1_HrpK: Bacterial 92.8 1.2 2.7E-05 36.6 9.1 95 409-506 8-107 (160)
288 PF08631 SPO22: Meiosis protei 92.8 8.3 0.00018 35.9 23.5 18 486-503 256-273 (278)
289 COG4649 Uncharacterized protei 92.7 5.2 0.00011 33.3 15.2 122 383-504 68-195 (221)
290 PF13176 TPR_7: Tetratricopept 92.5 0.24 5.2E-06 29.1 3.6 27 478-504 1-27 (36)
291 PRK10941 hypothetical protein; 92.4 1.3 2.8E-05 40.5 9.8 81 479-582 184-264 (269)
292 PF09205 DUF1955: Domain of un 92.4 4.5 9.8E-05 31.9 13.5 134 282-436 12-148 (161)
293 PF09613 HrpB1_HrpK: Bacterial 92.2 1.1 2.4E-05 36.8 8.1 83 445-527 8-95 (160)
294 PF10602 RPN7: 26S proteasome 92.1 2.3 5E-05 36.2 10.5 96 375-470 38-139 (177)
295 TIGR02561 HrpB1_HrpK type III 92.1 0.84 1.8E-05 36.8 7.1 71 455-527 21-95 (153)
296 PF07719 TPR_2: Tetratricopept 92.0 0.27 5.9E-06 28.2 3.5 29 511-539 2-30 (34)
297 PRK09687 putative lyase; Provi 92.0 10 0.00023 35.2 27.6 60 239-298 35-98 (280)
298 PF10345 Cohesin_load: Cohesin 91.9 19 0.00041 38.0 30.2 179 25-205 37-252 (608)
299 KOG1586 Protein required for f 91.9 8.4 0.00018 33.9 13.3 49 422-470 128-180 (288)
300 TIGR02561 HrpB1_HrpK type III 91.4 2.3 4.9E-05 34.4 8.8 108 408-537 7-120 (153)
301 PF10602 RPN7: 26S proteasome 91.4 1.4 3E-05 37.6 8.4 92 445-536 37-139 (177)
302 PF00515 TPR_1: Tetratricopept 91.4 0.36 7.8E-06 27.7 3.5 29 511-539 2-30 (34)
303 PRK11619 lytic murein transgly 91.4 22 0.00047 37.6 39.0 462 44-547 34-513 (644)
304 PF13170 DUF4003: Protein of u 90.8 13 0.00029 34.7 14.9 137 288-454 78-227 (297)
305 PF13170 DUF4003: Protein of u 90.8 6 0.00013 37.0 12.5 142 13-157 61-227 (297)
306 KOG4648 Uncharacterized conser 90.6 0.89 1.9E-05 41.9 6.7 92 380-475 104-197 (536)
307 PF07721 TPR_4: Tetratricopept 90.5 0.38 8.2E-06 25.7 2.7 24 511-534 2-25 (26)
308 KOG0890 Protein kinase of the 90.3 48 0.001 39.8 24.1 63 444-506 1670-1732(2382)
309 COG3629 DnrI DNA-binding trans 90.2 3.6 7.8E-05 37.7 10.2 78 375-453 155-236 (280)
310 PF13174 TPR_6: Tetratricopept 90.0 0.64 1.4E-05 26.3 3.7 24 514-537 4-27 (33)
311 PF02284 COX5A: Cytochrome c o 89.9 2.4 5.2E-05 31.6 7.1 60 391-452 28-87 (108)
312 COG1747 Uncharacterized N-term 89.8 22 0.00048 35.2 22.9 170 344-520 68-249 (711)
313 PF08631 SPO22: Meiosis protei 89.8 17 0.00037 33.8 24.5 61 375-436 86-149 (278)
314 COG2976 Uncharacterized protei 89.8 12 0.00026 32.0 13.5 89 415-506 96-189 (207)
315 KOG1464 COP9 signalosome, subu 89.7 15 0.00032 33.0 17.3 252 255-513 41-340 (440)
316 PF13431 TPR_17: Tetratricopep 89.6 0.41 9E-06 27.6 2.6 24 441-464 10-33 (34)
317 PF00637 Clathrin: Region in C 89.5 1.2 2.6E-05 36.5 6.4 129 117-256 12-140 (143)
318 PF13374 TPR_10: Tetratricopep 89.4 0.9 2E-05 27.4 4.3 26 479-504 5-30 (42)
319 COG2909 MalT ATP-dependent tra 89.3 34 0.00073 36.6 19.4 157 384-544 469-652 (894)
320 cd00923 Cyt_c_Oxidase_Va Cytoc 89.1 2.7 5.9E-05 30.9 6.8 62 389-452 23-84 (103)
321 PF14853 Fis1_TPR_C: Fis1 C-te 89.0 1.7 3.7E-05 28.2 5.3 37 479-515 4-40 (53)
322 KOG1550 Extracellular protein 89.0 27 0.00058 36.3 16.9 153 386-546 262-433 (552)
323 KOG0276 Vesicle coat complex C 88.9 10 0.00022 38.3 12.6 149 354-535 598-746 (794)
324 PF13174 TPR_6: Tetratricopept 88.8 0.59 1.3E-05 26.4 2.9 26 479-504 3-28 (33)
325 PF07035 Mic1: Colon cancer-as 88.3 14 0.0003 31.0 13.2 136 132-301 14-149 (167)
326 PF13374 TPR_10: Tetratricopep 88.2 0.96 2.1E-05 27.3 3.8 29 511-539 3-31 (42)
327 KOG2066 Vacuolar assembly/sort 88.1 38 0.00082 35.6 25.3 122 149-272 394-536 (846)
328 PF13181 TPR_8: Tetratricopept 87.7 1.2 2.6E-05 25.4 3.8 29 511-539 2-30 (34)
329 PRK13800 putative oxidoreducta 87.7 52 0.0011 36.7 26.5 94 238-335 786-880 (897)
330 KOG4234 TPR repeat-containing 87.5 12 0.00026 32.1 10.5 99 419-519 106-211 (271)
331 KOG3364 Membrane protein invol 87.1 6.5 0.00014 31.2 8.2 72 441-512 29-107 (149)
332 KOG4570 Uncharacterized conser 86.9 6.9 0.00015 36.0 9.5 101 336-437 58-164 (418)
333 KOG4570 Uncharacterized conser 86.7 6 0.00013 36.3 9.0 102 38-142 58-165 (418)
334 PF04097 Nic96: Nup93/Nic96; 86.6 29 0.00063 36.6 15.6 43 82-125 116-158 (613)
335 PF00637 Clathrin: Region in C 86.5 1.1 2.3E-05 36.8 4.3 53 84-136 14-66 (143)
336 PF14561 TPR_20: Tetratricopep 86.0 2.7 5.8E-05 31.1 5.6 44 497-540 9-52 (90)
337 TIGR03504 FimV_Cterm FimV C-te 86.0 1.6 3.5E-05 26.9 3.7 27 514-540 3-29 (44)
338 PF11207 DUF2989: Protein of u 85.9 16 0.00035 31.5 10.8 74 456-530 119-198 (203)
339 KOG1550 Extracellular protein 85.8 48 0.001 34.5 22.7 246 284-539 261-538 (552)
340 COG4785 NlpI Lipoprotein NlpI, 85.7 23 0.00051 30.8 15.2 63 77-140 99-161 (297)
341 cd00923 Cyt_c_Oxidase_Va Cytoc 85.4 6 0.00013 29.2 6.8 49 469-517 35-83 (103)
342 TIGR02270 conserved hypothetic 85.2 41 0.00089 33.3 23.7 163 84-256 45-207 (410)
343 PF04910 Tcf25: Transcriptiona 85.1 39 0.00084 32.8 14.8 64 475-538 99-167 (360)
344 KOG0276 Vesicle coat complex C 85.0 21 0.00046 36.1 12.5 101 252-369 648-748 (794)
345 COG3947 Response regulator con 84.9 4.3 9.3E-05 36.8 7.2 59 479-537 282-340 (361)
346 PF02284 COX5A: Cytochrome c o 84.4 7.7 0.00017 29.0 7.1 49 469-517 38-86 (108)
347 smart00028 TPR Tetratricopepti 83.6 2.1 4.5E-05 23.3 3.5 24 513-536 4-27 (34)
348 KOG0890 Protein kinase of the 83.6 1.1E+02 0.0025 37.0 30.9 304 221-543 1394-1735(2382)
349 KOG0545 Aryl-hydrocarbon recep 83.6 11 0.00025 33.3 9.0 58 482-539 236-293 (329)
350 PF06552 TOM20_plant: Plant sp 83.4 6.1 0.00013 33.2 7.0 46 492-544 96-141 (186)
351 PRK15180 Vi polysaccharide bio 83.2 9.8 0.00021 37.2 9.2 88 418-507 333-422 (831)
352 COG4455 ImpE Protein of avirul 82.2 6.4 0.00014 34.1 6.9 63 448-510 5-69 (273)
353 PF09986 DUF2225: Uncharacteri 81.9 9.8 0.00021 33.6 8.4 64 478-541 120-196 (214)
354 PF14853 Fis1_TPR_C: Fis1 C-te 81.8 9.8 0.00021 24.7 6.2 28 512-539 3-30 (53)
355 PRK12798 chemotaxis protein; R 81.7 54 0.0012 32.0 22.6 150 355-506 125-287 (421)
356 PF11207 DUF2989: Protein of u 81.5 16 0.00034 31.6 9.0 73 390-463 123-197 (203)
357 KOG4642 Chaperone-dependent E3 81.0 4.7 0.0001 35.5 5.7 84 418-504 20-106 (284)
358 COG0790 FOG: TPR repeat, SEL1 80.4 51 0.0011 30.8 17.9 117 423-543 128-270 (292)
359 PRK13800 putative oxidoreducta 80.4 1E+02 0.0023 34.4 27.7 254 167-436 624-880 (897)
360 PF07721 TPR_4: Tetratricopept 80.3 3.6 7.8E-05 21.9 3.3 20 449-468 6-25 (26)
361 KOG4507 Uncharacterized conser 80.1 5.5 0.00012 39.9 6.6 100 419-521 618-721 (886)
362 KOG3824 Huntingtin interacting 80.1 4.2 9E-05 37.1 5.4 85 486-582 126-210 (472)
363 TIGR02508 type_III_yscG type I 79.5 24 0.00051 26.4 9.9 61 248-311 46-106 (115)
364 KOG2396 HAT (Half-A-TPR) repea 79.4 71 0.0015 31.9 25.8 234 259-504 300-558 (568)
365 KOG4279 Serine/threonine prote 79.1 84 0.0018 33.1 14.4 179 327-518 183-408 (1226)
366 KOG3364 Membrane protein invol 78.8 16 0.00034 29.1 7.4 23 515-537 76-98 (149)
367 PF13762 MNE1: Mitochondrial s 78.5 32 0.00069 28.0 9.4 89 35-125 28-128 (145)
368 smart00028 TPR Tetratricopepti 78.1 4.3 9.3E-05 21.9 3.6 30 478-507 3-32 (34)
369 COG1747 Uncharacterized N-term 77.4 82 0.0018 31.6 21.3 159 305-470 64-231 (711)
370 PF06552 TOM20_plant: Plant sp 77.4 6.3 0.00014 33.2 5.3 47 492-538 51-108 (186)
371 KOG1308 Hsp70-interacting prot 77.1 2.1 4.4E-05 39.8 2.7 56 486-541 158-213 (377)
372 KOG2422 Uncharacterized conser 77.0 60 0.0013 33.0 12.5 51 486-536 352-404 (665)
373 smart00386 HAT HAT (Half-A-TPR 76.5 5.5 0.00012 22.0 3.6 30 490-519 1-30 (33)
374 PF04097 Nic96: Nup93/Nic96; 76.5 74 0.0016 33.6 14.2 85 349-436 265-355 (613)
375 KOG0403 Neoplastic transformat 75.0 88 0.0019 30.7 17.5 58 346-403 513-573 (645)
376 KOG0551 Hsp90 co-chaperone CNS 75.0 15 0.00032 34.3 7.4 91 446-536 83-179 (390)
377 COG4105 ComL DNA uptake lipopr 74.7 65 0.0014 29.1 23.3 75 278-352 40-116 (254)
378 PF10579 Rapsyn_N: Rapsyn N-te 73.7 11 0.00023 26.8 4.8 19 410-428 45-63 (80)
379 PF10579 Rapsyn_N: Rapsyn N-te 73.6 8 0.00017 27.4 4.2 45 488-532 18-65 (80)
380 TIGR02508 type_III_yscG type I 72.6 38 0.00082 25.4 9.7 85 323-411 21-105 (115)
381 KOG4077 Cytochrome c oxidase, 71.3 27 0.00058 27.4 6.8 59 392-452 68-126 (149)
382 KOG2063 Vacuolar assembly/sort 71.2 1.3E+02 0.0029 32.9 14.3 22 447-468 687-708 (877)
383 COG4455 ImpE Protein of avirul 70.8 25 0.00053 30.8 7.3 126 376-511 4-140 (273)
384 TIGR03504 FimV_Cterm FimV C-te 70.7 11 0.00024 23.3 3.9 24 379-402 5-28 (44)
385 KOG0376 Serine-threonine phosp 69.5 3.8 8.2E-05 40.0 2.6 102 414-518 10-114 (476)
386 COG4976 Predicted methyltransf 68.5 10 0.00023 33.2 4.7 57 486-542 5-61 (287)
387 PF12862 Apc5: Anaphase-promot 68.1 19 0.00041 26.8 5.7 54 486-539 8-70 (94)
388 PF07163 Pex26: Pex26 protein; 67.1 39 0.00084 30.9 8.0 87 84-170 90-181 (309)
389 COG2976 Uncharacterized protei 66.2 87 0.0019 27.0 15.2 86 317-402 99-188 (207)
390 PF13934 ELYS: Nuclear pore co 66.1 99 0.0022 27.7 12.4 70 414-487 114-183 (226)
391 PF09670 Cas_Cas02710: CRISPR- 65.9 1.4E+02 0.003 29.3 17.5 25 561-585 353-377 (379)
392 KOG4077 Cytochrome c oxidase, 65.8 36 0.00077 26.8 6.6 49 469-517 77-125 (149)
393 PF14863 Alkyl_sulf_dimr: Alky 65.8 33 0.00072 27.9 6.9 64 460-526 57-120 (141)
394 KOG1464 COP9 signalosome, subu 65.8 1.1E+02 0.0023 27.9 17.9 198 269-466 23-253 (440)
395 PF08311 Mad3_BUB1_I: Mad3/BUB 65.6 56 0.0012 26.0 8.2 43 494-536 81-125 (126)
396 PF13762 MNE1: Mitochondrial s 64.8 54 0.0012 26.8 7.8 83 79-161 41-129 (145)
397 PF07163 Pex26: Pex26 protein; 64.1 89 0.0019 28.7 9.7 53 349-401 90-146 (309)
398 KOG0686 COP9 signalosome, subu 63.6 1.5E+02 0.0033 28.9 14.3 60 242-301 151-216 (466)
399 KOG4642 Chaperone-dependent E3 63.3 1E+02 0.0022 27.6 9.6 117 352-470 20-143 (284)
400 PF10345 Cohesin_load: Cohesin 62.9 2.1E+02 0.0046 30.3 33.7 188 41-236 27-251 (608)
401 COG2256 MGS1 ATPase related to 62.1 1.6E+02 0.0035 28.7 12.5 53 270-322 244-299 (436)
402 PF09477 Type_III_YscG: Bacter 61.9 69 0.0015 24.4 8.6 80 321-403 20-99 (116)
403 COG2912 Uncharacterized conser 61.9 72 0.0016 29.1 8.9 60 482-541 187-246 (269)
404 KOG2062 26S proteasome regulat 61.7 2.2E+02 0.0048 30.2 31.1 162 417-583 510-677 (929)
405 KOG3807 Predicted membrane pro 60.5 1.5E+02 0.0033 27.9 13.0 20 494-513 380-399 (556)
406 cd08819 CARD_MDA5_2 Caspase ac 60.5 64 0.0014 23.5 6.9 38 354-392 48-85 (88)
407 TIGR02270 conserved hypothetic 60.0 1.9E+02 0.0041 28.8 24.6 172 119-297 45-216 (410)
408 PF11846 DUF3366: Domain of un 59.8 42 0.0009 29.1 7.2 30 475-504 143-172 (193)
409 COG5159 RPN6 26S proteasome re 59.8 1.4E+02 0.0031 27.4 13.9 160 380-539 10-194 (421)
410 cd08819 CARD_MDA5_2 Caspase ac 57.5 66 0.0014 23.5 6.3 65 131-197 21-85 (88)
411 PF07720 TPR_3: Tetratricopept 56.0 39 0.00085 19.8 4.5 17 516-532 7-23 (36)
412 COG2178 Predicted RNA-binding 55.7 1.2E+02 0.0026 26.1 8.6 19 520-538 131-149 (204)
413 COG5159 RPN6 26S proteasome re 55.6 1.7E+02 0.0037 27.0 15.0 93 413-505 130-235 (421)
414 PF10366 Vps39_1: Vacuolar sor 54.5 97 0.0021 23.8 8.0 27 375-401 41-67 (108)
415 PF11838 ERAP1_C: ERAP1-like C 54.0 2E+02 0.0043 27.3 18.9 110 424-534 146-261 (324)
416 KOG0530 Protein farnesyltransf 53.7 1.8E+02 0.0038 26.6 16.1 118 460-584 94-215 (318)
417 KOG4507 Uncharacterized conser 53.4 60 0.0013 33.0 7.4 133 405-540 568-706 (886)
418 KOG2396 HAT (Half-A-TPR) repea 53.3 2.5E+02 0.0055 28.3 33.6 241 289-538 299-558 (568)
419 COG2909 MalT ATP-dependent tra 53.2 3.4E+02 0.0073 29.7 29.7 216 318-536 426-685 (894)
420 KOG1498 26S proteasome regulat 52.4 2.3E+02 0.005 27.5 15.7 175 339-541 49-243 (439)
421 PRK10941 hypothetical protein; 52.4 1.9E+02 0.0042 26.7 10.6 74 376-451 184-258 (269)
422 KOG0376 Serine-threonine phosp 51.5 30 0.00065 34.1 5.2 103 380-486 11-115 (476)
423 PF04910 Tcf25: Transcriptiona 50.8 2.5E+02 0.0054 27.4 17.2 158 354-526 22-194 (360)
424 PHA02875 ankyrin repeat protei 50.3 2.7E+02 0.0058 27.7 15.7 134 30-173 16-158 (413)
425 cd00280 TRFH Telomeric Repeat 50.2 1.6E+02 0.0035 25.1 10.8 47 483-530 118-164 (200)
426 PF10516 SHNi-TPR: SHNi-TPR; 48.9 45 0.00098 19.8 3.8 28 511-538 2-29 (38)
427 COG5191 Uncharacterized conser 48.7 38 0.00082 31.3 5.0 80 439-518 102-184 (435)
428 PF11846 DUF3366: Domain of un 48.6 79 0.0017 27.4 7.1 53 418-470 118-170 (193)
429 PRK13342 recombination factor 48.5 2.9E+02 0.0063 27.5 15.2 96 304-417 173-274 (413)
430 COG4976 Predicted methyltransf 48.4 29 0.00064 30.6 4.1 54 456-509 7-62 (287)
431 PF11848 DUF3368: Domain of un 47.5 57 0.0012 20.6 4.4 31 124-154 14-44 (48)
432 PF12968 DUF3856: Domain of Un 47.2 1.4E+02 0.003 23.5 7.0 20 517-536 107-126 (144)
433 KOG0292 Vesicle coat complex C 47.2 1.3E+02 0.0029 32.5 9.0 174 60-268 607-780 (1202)
434 cd00280 TRFH Telomeric Repeat 47.1 1.3E+02 0.0028 25.7 7.4 35 451-485 118-152 (200)
435 PRK10564 maltose regulon perip 47.0 39 0.00083 31.3 4.9 40 273-312 258-297 (303)
436 KOG0530 Protein farnesyltransf 46.9 1.3E+02 0.0029 27.3 7.8 25 497-521 208-232 (318)
437 KOG4521 Nuclear pore complex, 46.7 4.9E+02 0.011 29.6 14.5 120 411-532 986-1124(1480)
438 COG4003 Uncharacterized protei 46.7 52 0.0011 23.3 4.3 35 13-48 35-69 (98)
439 PF11663 Toxin_YhaV: Toxin wit 46.6 26 0.00055 27.9 3.2 33 282-316 105-137 (140)
440 KOG4567 GTPase-activating prot 46.3 2.5E+02 0.0055 26.3 10.0 42 133-174 264-305 (370)
441 KOG4814 Uncharacterized conser 46.3 2.5E+02 0.0053 29.3 10.4 84 455-538 365-456 (872)
442 PF11817 Foie-gras_1: Foie gra 46.2 77 0.0017 28.8 6.9 19 416-434 186-204 (247)
443 PF11848 DUF3368: Domain of un 45.8 76 0.0016 20.0 5.2 33 384-416 13-45 (48)
444 PHA02875 ankyrin repeat protei 45.8 3.1E+02 0.0068 27.2 17.5 15 390-404 297-311 (413)
445 PF10366 Vps39_1: Vacuolar sor 45.5 1.2E+02 0.0027 23.3 6.8 27 274-300 41-67 (108)
446 PHA03100 ankyrin repeat protei 45.0 3.5E+02 0.0076 27.5 15.6 131 135-268 124-274 (480)
447 PF11663 Toxin_YhaV: Toxin wit 45.0 34 0.00074 27.2 3.6 31 89-121 107-137 (140)
448 PF10255 Paf67: RNA polymerase 44.3 1.5E+02 0.0033 29.1 8.7 21 450-470 128-148 (404)
449 cd08326 CARD_CASP9 Caspase act 43.9 78 0.0017 23.0 5.2 63 28-96 18-80 (84)
450 COG0735 Fur Fe2+/Zn2+ uptake r 43.8 1.2E+02 0.0025 25.0 6.8 63 98-161 7-69 (145)
451 PF08311 Mad3_BUB1_I: Mad3/BUB 43.7 1.6E+02 0.0036 23.3 8.5 42 426-468 81-123 (126)
452 PF14689 SPOB_a: Sensor_kinase 43.4 48 0.001 22.3 3.8 23 413-435 28-50 (62)
453 PF04190 DUF410: Protein of un 43.4 2.7E+02 0.0058 25.6 15.9 159 354-539 2-170 (260)
454 PF04762 IKI3: IKI3 family; I 43.3 5.3E+02 0.012 29.1 17.3 48 381-434 880-927 (928)
455 COG4259 Uncharacterized protei 42.8 88 0.0019 23.4 5.1 40 496-535 57-97 (121)
456 PF14561 TPR_20: Tetratricopep 42.5 1.4E+02 0.003 22.1 8.0 52 475-526 21-74 (90)
457 PF09477 Type_III_YscG: Bacter 41.9 1.6E+02 0.0034 22.6 9.9 77 126-205 20-96 (116)
458 KOG1839 Uncharacterized protei 41.8 3.4E+02 0.0073 31.1 11.6 121 417-538 941-1085(1236)
459 PF14689 SPOB_a: Sensor_kinase 41.0 43 0.00094 22.6 3.3 30 372-401 22-51 (62)
460 PRK10564 maltose regulon perip 40.7 58 0.0013 30.2 5.0 39 375-413 259-297 (303)
461 KOG1497 COP9 signalosome, subu 40.6 3.2E+02 0.007 25.8 12.2 93 449-541 108-215 (399)
462 PF04190 DUF410: Protein of un 40.0 3E+02 0.0065 25.3 18.9 122 300-436 42-169 (260)
463 PRK13342 recombination factor 39.7 4E+02 0.0086 26.6 13.1 47 275-321 230-279 (413)
464 PF11768 DUF3312: Protein of u 39.4 4.4E+02 0.0096 27.1 11.4 24 346-369 412-435 (545)
465 KOG2063 Vacuolar assembly/sort 38.9 5.8E+02 0.013 28.3 20.8 38 317-354 601-638 (877)
466 PF14669 Asp_Glu_race_2: Putat 37.9 2.7E+02 0.0058 24.1 13.7 54 481-534 137-205 (233)
467 COG5191 Uncharacterized conser 37.3 53 0.0011 30.5 4.1 70 473-542 104-174 (435)
468 PF12862 Apc5: Anaphase-promot 37.1 1.7E+02 0.0037 21.6 7.8 22 415-436 48-69 (94)
469 PF08424 NRDE-2: NRDE-2, neces 37.1 3.8E+02 0.0082 25.6 12.8 106 431-538 8-130 (321)
470 KOG0545 Aryl-hydrocarbon recep 36.8 3.2E+02 0.007 24.7 9.1 74 446-519 232-307 (329)
471 KOG0686 COP9 signalosome, subu 36.8 4.2E+02 0.0091 26.0 15.2 63 273-336 151-216 (466)
472 COG0735 Fur Fe2+/Zn2+ uptake r 36.7 1.9E+02 0.0042 23.7 7.1 39 419-458 31-69 (145)
473 smart00777 Mad3_BUB1_I Mad3/BU 36.2 2.2E+02 0.0048 22.6 8.1 40 495-534 82-123 (125)
474 PF11817 Foie-gras_1: Foie gra 35.7 1.7E+02 0.0038 26.5 7.5 48 486-533 188-241 (247)
475 PF09868 DUF2095: Uncharacteri 35.0 74 0.0016 24.4 3.9 38 14-52 66-103 (128)
476 PRK09857 putative transposase; 34.9 2.7E+02 0.0059 26.1 8.7 66 479-544 209-274 (292)
477 KOG0292 Vesicle coat complex C 34.7 6.6E+02 0.014 27.7 11.8 131 351-505 652-782 (1202)
478 cd07153 Fur_like Ferric uptake 34.7 70 0.0015 24.8 4.2 49 13-63 4-52 (116)
479 PF06957 COPI_C: Coatomer (COP 34.1 1.7E+02 0.0036 29.0 7.3 44 467-510 289-334 (422)
480 KOG2471 TPR repeat-containing 33.9 2.9E+02 0.0062 27.8 8.5 137 380-521 213-380 (696)
481 COG3947 Response regulator con 33.4 4.1E+02 0.0088 24.9 14.3 58 447-504 282-341 (361)
482 PF01475 FUR: Ferric uptake re 33.3 57 0.0012 25.6 3.5 49 12-62 10-58 (120)
483 cd08332 CARD_CASP2 Caspase act 33.1 1.3E+02 0.0029 22.2 5.1 59 28-92 22-80 (90)
484 KOG4567 GTPase-activating prot 32.7 4.3E+02 0.0092 24.9 10.1 78 292-374 263-350 (370)
485 COG4941 Predicted RNA polymera 32.5 4.5E+02 0.0098 25.1 10.7 118 389-511 272-400 (415)
486 PF15297 CKAP2_C: Cytoskeleton 32.4 2.2E+02 0.0048 27.2 7.4 62 459-520 118-185 (353)
487 PRK11639 zinc uptake transcrip 32.1 1.9E+02 0.0042 24.4 6.6 59 400-460 18-76 (169)
488 PRK14700 recombination factor 31.9 4.4E+02 0.0095 24.8 13.9 67 272-338 123-197 (300)
489 KOG0991 Replication factor C, 31.8 3.8E+02 0.0083 24.1 11.7 127 279-414 137-279 (333)
490 cd08326 CARD_CASP9 Caspase act 31.8 1.1E+02 0.0025 22.1 4.4 27 257-283 46-72 (84)
491 PRK11639 zinc uptake transcrip 31.2 1.9E+02 0.0041 24.4 6.5 60 103-163 17-76 (169)
492 PF13646 HEAT_2: HEAT repeats; 30.5 2E+02 0.0044 20.5 7.9 17 270-286 43-59 (88)
493 PRK09462 fur ferric uptake reg 30.4 2.5E+02 0.0055 23.0 7.0 64 98-161 3-66 (148)
494 PF07875 Coat_F: Coat F domain 30.1 47 0.001 22.5 2.2 38 5-44 26-63 (64)
495 PF07575 Nucleopor_Nup85: Nup8 30.1 83 0.0018 32.9 5.0 26 77-103 149-174 (566)
496 PF09670 Cas_Cas02710: CRISPR- 29.3 5.6E+02 0.012 25.2 12.1 55 281-336 140-198 (379)
497 PRK14962 DNA polymerase III su 29.0 6.4E+02 0.014 25.7 11.4 123 227-349 198-326 (472)
498 TIGR02710 CRISPR-associated pr 28.6 5.7E+02 0.012 25.1 11.6 53 381-433 138-196 (380)
499 PF12796 Ank_2: Ankyrin repeat 28.4 1.5E+02 0.0032 21.3 4.8 11 60-70 8-18 (89)
500 PF12583 TPPII_N: Tripeptidyl 28.1 2.5E+02 0.0054 22.4 5.8 38 485-522 85-122 (139)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.1e-82 Score=682.01 Aligned_cols=575 Identities=33% Similarity=0.568 Sum_probs=548.7
Q ss_pred cccccCchhHHHHHHHccCchHHHHHHHHHHHcCCCCC-----------------------------------hhhHhHH
Q 007871 6 AAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITE-----------------------------------PFTLSQL 50 (586)
Q Consensus 6 ~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~-----------------------------------~~~~~~l 50 (586)
.++..+++.+++.+..+|++++|.++++.|.+.|+.|| +.+++.+
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 34556667777777777777777777777666666555 4455777
Q ss_pred HHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchH
Q 007871 51 LMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130 (586)
Q Consensus 51 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 130 (586)
+. +|++. |++++|.++|++|+.||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.
T Consensus 229 i~-~y~k~-g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 229 IT-MYVKC-GDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred HH-HHhcC-CCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Confidence 77 88999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC----C
Q 007871 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----Q 206 (586)
Q Consensus 131 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~ 206 (586)
+.+++..|.+.|+.||..+|+.|+.+|+++|++++|.++|++|..+|..+||.++.+|++.|++++|+++|++|. .
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 386 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997 7
Q ss_pred CChhHHHHHHHHHhhccCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 007871 207 KDAISWSIMIDGYRKKKGDISSARILFEHMP----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282 (586)
Q Consensus 207 ~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 282 (586)
||..||+.++.+| ++.|+++.|.++++.+. .++..++++|+++|++.|++++|.++|++|.++|+.+|+.++.+|
T Consensus 387 Pd~~t~~~ll~a~-~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~ 465 (857)
T PLN03077 387 PDEITIASVLSAC-ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465 (857)
T ss_pred CCceeHHHHHHHH-hccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 9999999999999 99999999999998775 568999999999999999999999999999999999999999999
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007871 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362 (586)
Q Consensus 283 ~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 362 (586)
++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++++.+|++.|++++|.
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 999999999999999986 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCC
Q 007871 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442 (586)
Q Consensus 363 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 442 (586)
++|+.+ .+|..+|++++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.++.++.|
T Consensus 545 ~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 545 NQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 999999 8999999999999999999999999999999999999999999999999999999999999999996579999
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 522 (586)
+..+|+.++++|++.|++++|.+++++|+.+||..+|.+++.+|..+|+.+.++...+++.+++|+++..|..++++|..
T Consensus 624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD 703 (857)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhCCCccCCCeeEEEECCeEeEEecCCCCCCChhHHHHHHHHHHHHHhh
Q 007871 523 AGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585 (586)
Q Consensus 523 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 585 (586)
.|+|++|.++.+.|++.|++++|+++|+.+++.+|.|..||++||+..+||..|..+..++++
T Consensus 704 ~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 766 (857)
T PLN03077 704 AGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKA 766 (857)
T ss_pred CCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999998875
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-74 Score=604.76 Aligned_cols=512 Identities=29% Similarity=0.529 Sum_probs=498.1
Q ss_pred CCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCC-CCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHH
Q 007871 73 YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKG-LLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVN 151 (586)
Q Consensus 73 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 151 (586)
..++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34567799999999999999999999999998765 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC----CCChhHHHHHHHHHhhccCCHH
Q 007871 152 GLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDIS 227 (586)
Q Consensus 152 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~g~~~ 227 (586)
.|+.+|++.|+++.|.++|++|.++|..+||.++.+|++.|++++|+.+|++|. .||..+|+.++.++ ...|..+
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~-~~~~~~~ 241 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS-AGLGSAR 241 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH-hcCCcHH
Confidence 999999999999999999999999999999999999999999999999999997 78999999999999 9999999
Q ss_pred HHHHHHHhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 007871 228 SARILFEHMP----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303 (586)
Q Consensus 228 ~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 303 (586)
.+.+++..+. .+|..++++|+++|++.|++++|.++|++|.++|+.+||.++.+|++.|++++|+++|++|.+.|+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999976554 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHH
Q 007871 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383 (586)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 383 (586)
.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+++.|+.+|++.|++++|.++|++|.++|..+||++|.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHH
Q 007871 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463 (586)
Q Consensus 384 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 463 (586)
++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.++.++.|+..+|+.++++|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999988679999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 007871 464 LNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543 (586)
Q Consensus 464 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 543 (586)
.+++++|+..|+..+|+.++.+|..+|+++.|..+++++.+.+|++...|..++.+|.+.|++++|.++++.|.+.|+++
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEECCeEeEEecCCCCCCChhHHHHHHHHHHHHHhh
Q 007871 544 ETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585 (586)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 585 (586)
.++++|+.+.+.+|.|..|++.||+..+||..|..+..++++
T Consensus 562 ~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 603 (697)
T PLN03081 562 HPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE 603 (697)
T ss_pred CCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999875
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-71 Score=598.44 Aligned_cols=523 Identities=29% Similarity=0.446 Sum_probs=485.4
Q ss_pred cCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCCchhHHHHHHH
Q 007871 23 KTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVN 102 (586)
Q Consensus 23 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 102 (586)
+.++.+.+++..+.+.+..+++..+|.++. +|++. |+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++
T Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~n~li~-~~~~~-g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~ 177 (857)
T PLN03077 100 RAVEEGSRVCSRALSSHPSLGVRLGNAMLS-MFVRF-GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHR 177 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCCchHHHHHHH-HHHhC-CChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHH
Confidence 344444555555555555556666678888 88999 9999999999999999999999999999999999999999999
Q ss_pred hHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHH
Q 007871 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182 (586)
Q Consensus 103 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 182 (586)
|...|+.||..||+.++++|+..+++..+.+++..|.+.|+.||..+++.|+.+|+++|+++.|.++|++|+.+|..+||
T Consensus 178 M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n 257 (857)
T PLN03077 178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWN 257 (857)
T ss_pred HHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChhHHHHHHhhCC----CCChhHHHHHHHHHhhccCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhc
Q 007871 183 LVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHMP----IKDLISWNSMIDGYAKI 254 (586)
Q Consensus 183 ~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~ 254 (586)
.++.+|++.|++++|+.+|++|. .||..||+.++.+| .+.|+++.|.+++..+. .||..+|+.++.+|++.
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~-~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 336 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC-ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH-HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc
Confidence 99999999999999999999997 89999999999999 99999999999987765 67999999999999999
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 007871 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334 (586)
Q Consensus 255 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 334 (586)
|++++|.++|++|.+||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.
T Consensus 337 g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~ 416 (857)
T PLN03077 337 GSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416 (857)
T ss_pred CCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007871 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414 (586)
Q Consensus 335 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 414 (586)
+.|+.|+..+++.|+.+|++.|++++|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||..+
T Consensus 417 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~l 495 (857)
T PLN03077 417 RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAA 495 (857)
T ss_pred HhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999986 599999999999
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 007871 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTL 494 (586)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 494 (586)
+.+|++.|+.+.+.+++..+.+ .|+.++..+++.|+++|.++|++++|.++|+++ .||..+|+.++.+|.++|+.++
T Consensus 496 L~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~ 572 (857)
T PLN03077 496 LSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSM 572 (857)
T ss_pred HHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHH
Confidence 9999999999999999999998 599999999999999999999999999888888 6888888888888888888889
Q ss_pred HHHHHHHHHhcC-CCCcchHHHHHHHHHhcCCchHHHHHHHHHH-hCCCccCCCeeEEEE
Q 007871 495 AEVVVEGLVELK-ADDCGLYVLLSNIYADAGMWEHALRIRKMMR-KRKIKKETGRSVIEI 552 (586)
Q Consensus 495 a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~~~ 552 (586)
|+++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+.|. +.|+.|+..+|..++
T Consensus 573 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 998888888876 5677788888888888888888888888887 678888776665443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-63 Score=525.11 Aligned_cols=496 Identities=16% Similarity=0.238 Sum_probs=394.1
Q ss_pred CCChhhHhHHHHHhccCCCCChHHHHHHHhccCC-----CCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccH
Q 007871 41 ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ-----PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTY 115 (586)
Q Consensus 41 ~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 115 (586)
.++...|..++. .+.+. |++++|.++|++|.. ++...++.++.+|.+.|..++|+++|+.|.. ||..+|
T Consensus 367 ~~~~~~~~~~y~-~l~r~-G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 367 KRKSPEYIDAYN-RLLRD-GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCchHHHHHHH-HHHHC-cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 455666666666 56666 777777777777733 3334455566667777777777777776653 677777
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC----CCChhhHHHHHHHHHhC
Q 007871 116 PFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE----IKDLVSWNLVLRGFVEC 191 (586)
Q Consensus 116 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~ 191 (586)
+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 77777777777777777777777777777777777777777777777777777777665 35677777777777777
Q ss_pred CChhHHHHHHhhCC----CCChhHHHHHHHHHhhccCCHHHHHHHHHhCC------CCChhHHHHHHHHHHhcCCHHHHH
Q 007871 192 GEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHMP------IKDLISWNSMIDGYAKIGDLVAAQ 261 (586)
Q Consensus 192 g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~ 261 (586)
|++++|..+|+.|. .||..+|+.++.+| ++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~-~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISAC-GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 77777777777775 67777777777777 77777777777777663 468888888888888888888888
Q ss_pred HHHhhCCC----CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 007871 262 QLFNEMPE----RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337 (586)
Q Consensus 262 ~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (586)
++|+.|.+ |+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 88888874 67788888999999999999999999999888888898899999999988899999999999888888
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhccC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 007871 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMT----KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413 (586)
Q Consensus 338 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 413 (586)
+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 88888899999999999999999988888885 58888899999999999999999999999888888899889999
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh----hc-------------------CCHHHHHHHHHhC
Q 007871 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS----RA-------------------GELEQALNIVESM 470 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~-------------------g~~~~A~~~~~~~ 470 (586)
++.+|++.|++++|.++++.|.+ .|+.||..+|+.++..|. ++ +..++|..+|++|
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 99888888999999999998888 488888888888876533 11 2346799999998
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCC
Q 007871 471 ---PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK-ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546 (586)
Q Consensus 471 ---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 546 (586)
+..||..+|..++.+++..++...+..+++.+.... +++...|+.+++.+.+. .++|..++++|.+.|+.|+..
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 678999999999988888889999988888776543 77888999999987322 358999999999999999875
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.9e-63 Score=519.98 Aligned_cols=493 Identities=16% Similarity=0.215 Sum_probs=459.9
Q ss_pred cccCchhHHHHHHHccCchHHHHHHHHHHHcCCC-CChhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHH
Q 007871 8 KFSLKNPLVSLLQISKTTTHILQILAQLTTNDLI-TEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRG 86 (586)
Q Consensus 8 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~ 86 (586)
+.+.+..+...+..+|++++|.++++.|.+.|+. ++..+++.++. .|.+. |.+++|.++|+.|..|+..+|+.+|.+
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~-~~~~~-g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFK-ACKKQ-RAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHH-HHHHC-CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4555666777777789999999999999999964 67777778888 89999 999999999999999999999999999
Q ss_pred HhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHH
Q 007871 87 YTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCA 166 (586)
Q Consensus 87 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 166 (586)
|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCC----CCChhhHHHHHHHHHhCCChhHHHHHHhhCC------CCChhHHHHHHHHHhhccCCHHHHHHHHHhC
Q 007871 167 RSVFEGSE----IKDLVSWNLVLRGFVECGEMGKAREVFDEMP------QKDAISWSIMIDGYRKKKGDISSARILFEHM 236 (586)
Q Consensus 167 ~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~ 236 (586)
.++|++|. .||..+|+.++.+|++.|++++|.++|++|. .||..+|++++.+| ++.|++++|.++|+.|
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay-~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC-ANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH-HHCCCHHHHHHHHHHH
Confidence 99999885 4799999999999999999999999999995 68999999999999 9999999999999988
Q ss_pred C----CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHH
Q 007871 237 P----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE----RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308 (586)
Q Consensus 237 ~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~ 308 (586)
. .|+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.+++++|.+.|+.||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 7 45789999999999999999999999999984 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC----CCCHhHHHHHHHHHH
Q 007871 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT----KKNVISYNVMIAGLG 384 (586)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~ 384 (586)
+|+.++.+|++.|++++|..+|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986 489999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----c-------------------CCHHHHHHHHHHhHHhhCCC
Q 007871 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH----S-------------------GLATEGYRIFQSMKRHCGIE 441 (586)
Q Consensus 385 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~~ 441 (586)
+.|++++|.+++.+|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.+ .|+.
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~-~Gi~ 844 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS-AGTL 844 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH-CCCC
Confidence 999999999999999999999999999999876532 1 124679999999999 4999
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007871 442 PKLEHYSCLVDLLSRAGELEQALNIVESMP---MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506 (586)
Q Consensus 442 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 506 (586)
||..+|+.++.++...+..+.+..+++.|. ..|+..+|+.++.++.+. .++|..++++|.+.+
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 999999999999999999999999999884 456789999999998432 368999999999987
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8e-59 Score=487.73 Aligned_cols=429 Identities=25% Similarity=0.402 Sum_probs=409.8
Q ss_pred cccCchhHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHHH
Q 007871 8 KFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGY 87 (586)
Q Consensus 8 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~ 87 (586)
+..++..++..+...+.++.+.+++..+.+.|+.||+.+++.++. +|++. |+++.|.++|++|+.||..+||.++.+|
T Consensus 122 ~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~-~y~k~-g~~~~A~~lf~~m~~~~~~t~n~li~~~ 199 (697)
T PLN03081 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL-MHVKC-GMLIDARRLFDEMPERNLASWGTIIGGL 199 (697)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH-HHhcC-CCHHHHHHHHhcCCCCCeeeHHHHHHHH
Confidence 345566777777777889999999999999999999999999999 99999 9999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHH
Q 007871 88 TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCAR 167 (586)
Q Consensus 88 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 167 (586)
++.|++++|+++|++|.+.|+.||..+|+.++.+|+..|..+.+.+++..+.+.|+.||..+++.|+.+|+++|++++|.
T Consensus 200 ~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~ 279 (697)
T PLN03081 200 VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR 279 (697)
T ss_pred HHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC----CCChhHHHHHHHHHhhccCCHHHHHHHHHhCC----CC
Q 007871 168 SVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHMP----IK 239 (586)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~----~~ 239 (586)
++|++|.++|+.+||.++.+|++.|++++|+.+|++|. .||..||+.++.+| ++.|+++.|.++++.+. .+
T Consensus 280 ~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~-~~~g~~~~a~~i~~~m~~~g~~~ 358 (697)
T PLN03081 280 CVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF-SRLALLEHAKQAHAGLIRTGFPL 358 (697)
T ss_pred HHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhccchHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999996 89999999999999 99999999999988775 67
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007871 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319 (586)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 319 (586)
|..++++|+++|++.|++++|.++|++|.++|+.+||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 438 (697)
T PLN03081 359 DIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438 (697)
T ss_pred CeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHH-cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC-CCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 007871 320 VGALDLGKWIHVFMKR-SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNGFGEEALKCFA 397 (586)
Q Consensus 320 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 397 (586)
.|.+++|..+|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++++. +|+..+|++++.+|...|+.+.|..+++
T Consensus 439 ~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999999999976 6999999999999999999999999999999997 6899999999999999999999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCC
Q 007871 398 QMETEGIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442 (586)
Q Consensus 398 ~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 442 (586)
++.+ ..|+ ..+|..++..|++.|++++|.++++.|.+. |+..
T Consensus 519 ~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 519 KLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 9976 5665 579999999999999999999999999994 7754
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.6e-33 Score=305.95 Aligned_cols=519 Identities=13% Similarity=0.078 Sum_probs=337.9
Q ss_pred cCchhHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHHH
Q 007871 10 SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIRG 86 (586)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~ 86 (586)
.....+..++...|+++.|.+.+..+.+.+ +.++..+..+.. .+.+. |++++|.+.|+++ .+.+...|..+...
T Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~-~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 406 (899)
T TIGR02917 330 QARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGE-AYLAL-GDFEKAAEYLAKATELDPENAAARTQLGIS 406 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH-HHHHC-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 344556667777888888888888887764 345556666666 77777 8888888888876 33455567777778
Q ss_pred HhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHH
Q 007871 87 YTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCA 166 (586)
Q Consensus 87 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 166 (586)
+...|++++|.+.|+.+.+.... +......++..+.+.|++++|..+++.+.+. .+++..++..+...+...|++++|
T Consensus 407 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A 484 (899)
T TIGR02917 407 KLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKA 484 (899)
T ss_pred HHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHH
Confidence 88888888888888887765422 2334455666677777777777777777663 344566777777777777777777
Q ss_pred HHHhccCC---CCChhhHHHHHHHHHhCCChhHHHHHHhhCC---CCChhHHHHHHHHHhhccCCHHHHHHHHHhCC---
Q 007871 167 RSVFEGSE---IKDLVSWNLVLRGFVECGEMGKAREVFDEMP---QKDAISWSIMIDGYRKKKGDISSARILFEHMP--- 237 (586)
Q Consensus 167 ~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~--- 237 (586)
.+.|+++. +.+...+..+...+...|++++|...|+.+. +.+...+..+...+ ...|+.++|...++++.
T Consensus 485 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~ 563 (899)
T TIGR02917 485 REAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLY-LRTGNEEEAVAWLEKAAELN 563 (899)
T ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC
Confidence 77776543 2345566666777777777777777777765 23444555555555 66777777777766653
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007871 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314 (586)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 314 (586)
+.+...+..++..+.+.|++++|..+++.+.+ .+...|..+..++...|++++|...|+++.+.. +.+...+..+.
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 642 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLA 642 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 23455566666777777777777777766653 345666666777777777777777777766543 33455566666
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHH
Q 007871 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEE 391 (586)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 391 (586)
.++...|++++|..+++.+.+.. +.+...+..++..+...|++++|.++++.+.+ .+...+..+...+...|++++
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHH
Confidence 66666777777777776666553 33455666666666666777777666666652 344555666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 007871 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM- 470 (586)
Q Consensus 392 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 470 (586)
|...|+++... .|+..++..+..++...|++++|.+.++.+.+ ..+.+...+..++..|...|++++|.+.|+++
T Consensus 722 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 722 AIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred HHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 66666666663 34445555666666666666666666666666 34455666666666666666666666666665
Q ss_pred -CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007871 471 -PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 471 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 541 (586)
..++++..+..+...+...|+ .+|+.+++++.+..|+++..+..++.++...|++++|..+++++.+.+.
T Consensus 798 ~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 798 KKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 122345556666666666666 5566666666666666666666666666666666666666666665543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-32 Score=304.21 Aligned_cols=513 Identities=14% Similarity=0.022 Sum_probs=357.7
Q ss_pred hHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHHHHhcC
Q 007871 14 PLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIRGYTQS 90 (586)
Q Consensus 14 ~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~ 90 (586)
.+...+...|+++.|...+....+.. +.++..+..+.. .+.+. |++++|...++.+ .+.+...+..+...+.+.
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~-~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 376 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLAS-IQLRL-GRVDEAIATLSPALGLDPDDPAALSLLGEAYLAL 376 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH-HHHHC-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHC
Confidence 33445556677778877777777654 233344444444 66677 7888888777766 334555677777777777
Q ss_pred CCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHh
Q 007871 91 SNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF 170 (586)
Q Consensus 91 ~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 170 (586)
|++++|.++|+++.+.. +.+...+..+...+...|++++|.+.+..+.+... ........++..+.+.|++++|.+++
T Consensus 377 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 454 (899)
T TIGR02917 377 GDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAA 454 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 88888888887776653 22444566666777777788888877777776542 22334556677777788888887777
Q ss_pred ccCCC---CChhhHHHHHHHHHhCCChhHHHHHHhhCC--CC-ChhHHHHHHHHHhhccCCHHHHHHHHHhCC---CCCh
Q 007871 171 EGSEI---KDLVSWNLVLRGFVECGEMGKAREVFDEMP--QK-DAISWSIMIDGYRKKKGDISSARILFEHMP---IKDL 241 (586)
Q Consensus 171 ~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~---~~~~ 241 (586)
+.+.. .+..+|..+...+...|++++|...|+++. .| +...+..+...+ ...|++++|.+.++.+. +.+.
T Consensus 455 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~~~~~ 533 (899)
T TIGR02917 455 KKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARID-IQEGNPDDAIQRFEKVLTIDPKNL 533 (899)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCcCcH
Confidence 76543 355677777777778888888888877765 33 334444555555 67778888887777664 3356
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007871 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACA 318 (586)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 318 (586)
.++..+...+.+.|+.++|...++++.+ .+...+..++..+...|++++|..+++.+.+.. +.+...+..+..++.
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 6777777777778888888877777653 345566677777777888888888887777643 556667777777777
Q ss_pred ccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHH
Q 007871 319 QVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKC 395 (586)
Q Consensus 319 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~ 395 (586)
..|++++|...++.+.+.. +.+...+..+..++...|++++|...++++.+ .+..++..++..+...|++++|..+
T Consensus 613 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 691 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691 (899)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7788888888877777654 33555667777777777888888887776653 3456777777777778888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCC
Q 007871 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM--PMK 473 (586)
Q Consensus 396 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~ 473 (586)
++.+...+ +++...+..+...+...|++++|...++.+... .|+..++..++.++.+.|++++|.+.++++ ..+
T Consensus 692 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 767 (899)
T TIGR02917 692 AKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP 767 (899)
T ss_pred HHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 87777653 445566777777777778888888888777662 344466667777777888888887777766 223
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 474 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.+...+..+...|...|++++|...|+++.+..|+++.++..+++++...|+ .+|..+++++.+.
T Consensus 768 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 768 NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 4566677777777777888888888888887778777778888888888877 7777777777664
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.4e-24 Score=239.82 Aligned_cols=515 Identities=14% Similarity=0.042 Sum_probs=362.3
Q ss_pred hHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHHHHhcC
Q 007871 14 PLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIRGYTQS 90 (586)
Q Consensus 14 ~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~ 90 (586)
.+..++...|+.++|.+.++.+.+.+ +|+............... |+.++|++.|+++ .+.+...+..+...+...
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~-g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLP-AQRPEAINQLQRLNADYPGNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCC-ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Confidence 34557788899999999999999764 333332222333133345 8999999999998 344566788889999999
Q ss_pred CCchhHHHHHHHhHhCCCC--------------------------------CCcccH---------------------HH
Q 007871 91 SNPQKALSFYVNMKRKGLL--------------------------------VDNYTY---------------------PF 117 (586)
Q Consensus 91 ~~~~~A~~~~~~m~~~~~~--------------------------------~~~~~~---------------------~~ 117 (586)
|+.++|++.++++.+.... |+...+ ..
T Consensus 195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~ 274 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARA 274 (1157)
T ss_pred CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHH
Confidence 9999999999988653210 110000 01
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC--CC---hhhHH----------
Q 007871 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI--KD---LVSWN---------- 182 (586)
Q Consensus 118 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~---~~~~~---------- 182 (586)
....+...|++++|...|++.++.. +.+...+..|...|.+.|++++|...|++... |+ ...|.
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 1223345567777777777776643 23556666777777777777777777765543 11 11111
Q ss_pred --HHHHHHHhCCChhHHHHHHhhCC--CCC-hhHHHHHHHHHhhccCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhc
Q 007871 183 --LVLRGFVECGEMGKAREVFDEMP--QKD-AISWSIMIDGYRKKKGDISSARILFEHMP---IKDLISWNSMIDGYAKI 254 (586)
Q Consensus 183 --~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~ll~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~ 254 (586)
.....+.+.|++++|+..|+++. .|+ ...+..+...+ ...|++++|.+.|++.. +.+...+..+...|. .
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~-~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVA-MARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-h
Confidence 12334566777777777777766 333 33444444455 67777777777777665 234455555555553 3
Q ss_pred CCHHHHHHHHhhCCCCC------------hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 007871 255 GDLVAAQQLFNEMPERN------------VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322 (586)
Q Consensus 255 g~~~~A~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~ 322 (586)
++.++|...++.+.... ...+..+...+...|++++|+..|++.++.. +-+...+..+...+...|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 46677777776654311 1234445667778899999999999998864 3356677788888999999
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC----CH---------hHHHHHHHHHHhcCCh
Q 007871 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK----NV---------ISYNVMIAGLGMNGFG 389 (586)
Q Consensus 323 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~~ 389 (586)
+++|...++.+.+.. +.+...+..+...+...++.++|...++.+... +. ..+..+...+...|+.
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999988764 334445555556677889999999999987632 11 1123456678889999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 007871 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469 (586)
Q Consensus 390 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 469 (586)
++|..+++. .+++...+..+...+.+.|++++|+..|+.+.+ ..+.+...+..++.+|...|++++|++.++.
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999872 355666778888899999999999999999998 4566788999999999999999999999998
Q ss_pred CC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCCchHHHHHHHHHH-hCC
Q 007871 470 MP-MKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC------GLYVLLSNIYADAGMWEHALRIRKMMR-KRK 540 (586)
Q Consensus 470 ~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~ 540 (586)
.. ..| +...+..+..++...|++++|.++++++.+..|+++ .++..++.++...|++++|.+.|++.. ..|
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~ 742 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASG 742 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Confidence 73 334 456667778888999999999999999999876554 366777999999999999999999975 344
Q ss_pred Cc
Q 007871 541 IK 542 (586)
Q Consensus 541 ~~ 542 (586)
+.
T Consensus 743 ~~ 744 (1157)
T PRK11447 743 IT 744 (1157)
T ss_pred CC
Confidence 54
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=4.5e-24 Score=235.93 Aligned_cols=507 Identities=13% Similarity=0.060 Sum_probs=264.6
Q ss_pred HHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc--CCCCcchH---------------
Q 007871 18 LLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI--YQPNTYMH--------------- 80 (586)
Q Consensus 18 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~--~~~~~~~~--------------- 80 (586)
+-...++.+.|.+.+..+.... +.++..+..... ++.+. |+.++|.+.+++. ..|+...+
T Consensus 37 ~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~-~~l~~-g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 37 LGEATHREDLVRQSLYRLELID-PNNPDVIAARFR-LLLRQ-GDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred HHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHH-HHHhC-CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchh
Confidence 3445578999999999988775 345666677777 78888 9999999999988 23433222
Q ss_pred --HHHHHHHhcCCCchhHHHHHHHhHhCCCCCCccc-HHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007871 81 --NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYT-YPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMY 157 (586)
Q Consensus 81 --~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 157 (586)
..+.+.+...|++++|++.|+.+.+.+ +|+... ...........++.++|...++++.+.. +.+...+..+...+
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll 191 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLL 191 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 223446788999999999999998753 333221 1111222234689999999999999864 44566788899999
Q ss_pred HhcCChhHHHHHhccCCCCCh------hhH-----------------HHHHHHHHhCCChhHHHHHHhhCC--CCChhHH
Q 007871 158 SKCGHMGCARSVFEGSEIKDL------VSW-----------------NLVLRGFVECGEMGKAREVFDEMP--QKDAISW 212 (586)
Q Consensus 158 ~~~g~~~~a~~~~~~~~~~~~------~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 212 (586)
...|+.++|...++++..... ..| ...+..+-.....+.|...+.... .+|....
T Consensus 192 ~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~ 271 (1157)
T PRK11447 192 FSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR 271 (1157)
T ss_pred HccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH
Confidence 999999999999987643210 001 100000001111222222222221 0111100
Q ss_pred H-HHHHHHhhccCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh---hHHH-------
Q 007871 213 S-IMIDGYRKKKGDISSARILFEHMP---IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE--RNV---FSWS------- 276 (586)
Q Consensus 213 ~-~ll~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~------- 276 (586)
. .....+ ...|++++|+..|++.. +.+..++..+...+.+.|++++|+..|++..+ |+. ..|.
T Consensus 272 ~~~~G~~~-~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 272 ARAQGLAA-VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 0 111222 44555555555555443 22445555555555555555555555555443 211 1111
Q ss_pred -----HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHH-----
Q 007871 277 -----IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT----- 346 (586)
Q Consensus 277 -----~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----- 346 (586)
.....+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...|+.+.+... .+...+.
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l 428 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 11223445555555555555555542 22334444455555555555555555555554431 1222222
Q ss_pred -------------------------------------HHHHHHHhcCCHHHHHHHHhccCC--C-CHhHHHHHHHHHHhc
Q 007871 347 -------------------------------------ALIDMYMKCGSLDEARRIFYSMTK--K-NVISYNVMIAGLGMN 386 (586)
Q Consensus 347 -------------------------------------~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~ 386 (586)
.+...+...|++++|.+.|++..+ | +...+..+...|.+.
T Consensus 429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 233445556666666666665542 2 344555666666666
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCCh---------HHHHHHHHHHhh
Q 007871 387 GFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL---------EHYSCLVDLLSR 456 (586)
Q Consensus 387 ~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~ 456 (586)
|++++|...++++.+. .| +...+..+...+...|++++|...++.+... ...++. ..+..++..+..
T Consensus 509 G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 509 GQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred CCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 6666666666666652 23 3333333444455566666666666654221 000000 001112223333
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 457 AGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 457 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
.|+.++|..+++.- +++...+..+...+...|++++|+..|+++++..|+++..+..++.+|...|++++|.+.++..
T Consensus 586 ~G~~~eA~~~l~~~--p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 586 SGKEAEAEALLRQQ--PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred CCCHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444444444321 1122333334444444455555555555555545555544544555554555555555444444
Q ss_pred H
Q 007871 537 R 537 (586)
Q Consensus 537 ~ 537 (586)
.
T Consensus 664 l 664 (1157)
T PRK11447 664 P 664 (1157)
T ss_pred h
Confidence 3
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=2e-21 Score=205.20 Aligned_cols=510 Identities=11% Similarity=0.043 Sum_probs=313.3
Q ss_pred ccCchhHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHH
Q 007871 9 FSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIR 85 (586)
Q Consensus 9 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~ 85 (586)
..++..|.+++...|+.+.|+...+..++.+ |+...+..++. .+ +++++|...++++ .+.+...+..+..
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La-~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~ 150 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLA-AI----PVEVKSVTTVEELLAQQKACDAVPTLRCR 150 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHH-Hh----ccChhHHHHHHHHHHhCCCChhHHHHHHH
Confidence 4444555555566666666666666665542 34444433333 22 3455555666655 2223333333333
Q ss_pred H--------HhcCCCchhHHHHHHHhHhCCCCCCcccHHHH-HHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007871 86 G--------YTQSSNPQKALSFYVNMKRKGLLVDNYTYPFV-LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGM 156 (586)
Q Consensus 86 ~--------~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 156 (586)
. |.+. ++|.+.++ .......|+..+.... .+.|...++++.+..++.++.+.+. .+......|..+
T Consensus 151 ~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~a 225 (987)
T PRK09782 151 SEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDV 225 (987)
T ss_pred HhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3 3333 44444443 2222223334433444 6777888888888888888888763 344456666667
Q ss_pred HHh-cCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC-----CCChhHHHH----------------
Q 007871 157 YSK-CGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP-----QKDAISWSI---------------- 214 (586)
Q Consensus 157 ~~~-~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~---------------- 214 (586)
|.. .++ +.+..+++.....++..+..+...|.+.|+.++|..+++++. .|+..++..
T Consensus 226 y~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~ 304 (987)
T PRK09782 226 LLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANY 304 (987)
T ss_pred HHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccch
Confidence 777 366 777777765545678888899999999999999999998887 232111111
Q ss_pred --------------HHHHHhhccCCHHHHHHHHHhCC--------------------------------CCChhHHHHHH
Q 007871 215 --------------MIDGYRKKKGDISSARILFEHMP--------------------------------IKDLISWNSMI 248 (586)
Q Consensus 215 --------------ll~~~~~~~g~~~~a~~~~~~~~--------------------------------~~~~~~~~~l~ 248 (586)
++..+ .+.++++.+.++.+.-. +.+......+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~ 383 (987)
T PRK09782 305 TVQFADNRQYVVGATLPVL-LKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLT 383 (987)
T ss_pred hhhhHHHHHHHHHHHHHHH-HhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 12333 45555555555522111 01344444555
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--C----ChhHHHHHHHHHHhCCC---chHHHHH----------------------HHH
Q 007871 249 DGYAKIGDLVAAQQLFNEMPE--R----NVFSWSIMIDGYAQHGN---PKEALYL----------------------FRE 297 (586)
Q Consensus 249 ~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~---~~~A~~~----------------------~~~ 297 (586)
-...+.|+.++|.++|..... + +......++..|.+.+. ..++..+ ...
T Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (987)
T PRK09782 384 WQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPA 463 (987)
T ss_pred HHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHH
Confidence 566778888888888887764 1 22233455666665544 2233222 111
Q ss_pred HHHC-CC-CC--CHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C
Q 007871 298 MLCQ-GV-RP--DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--K 371 (586)
Q Consensus 298 m~~~-g~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~ 371 (586)
.... +. ++ +...+..+..++.. ++.++|...+....... |+......+...+...|++++|...|+.+.. +
T Consensus 464 ~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p 540 (987)
T PRK09782 464 IVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDM 540 (987)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 1111 11 23 45566666666555 67777887776666553 4443333444555678888888888876653 4
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHH
Q 007871 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450 (586)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 450 (586)
+...+..+..++.+.|++++|...+++..+.. |+. ..+..+...+...|++++|...+++..+ ..|+...+..+
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~L 615 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVAR 615 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHH
Confidence 44556666677778888888888888877742 333 3333333444556888888888888776 23567777788
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 007871 451 VDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528 (586)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 528 (586)
+.++.+.|++++|+..+++. ...| +...+..+..++...|++++|+..++++++..|+++.++..++.++...|++++
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 88888888888888888776 3344 456666677778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhCC
Q 007871 529 ALRIRKMMRKRK 540 (586)
Q Consensus 529 A~~~~~~m~~~~ 540 (586)
|...+++..+..
T Consensus 696 A~~~l~~Al~l~ 707 (987)
T PRK09782 696 TQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHhcC
Confidence 888888876544
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=7.1e-21 Score=201.09 Aligned_cols=542 Identities=11% Similarity=-0.028 Sum_probs=379.1
Q ss_pred ccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc--CCCCcchHHHHHHHHhcCCCchhHHHH
Q 007871 22 SKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI--YQPNTYMHNTMIRGYTQSSNPQKALSF 99 (586)
Q Consensus 22 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~A~~~ 99 (586)
.|+.++|...++..++..+.- +.++..+.+ +|... |++++|+..+++. ..|+-..|..++..+ +++.+|.++
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~-~yl~~-g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDN-IPLTLYLAE-AYRHF-GHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCC-HHHHHHHHH-HHHHC-CCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHH
Confidence 389999999999999886333 566666666 89999 9999999999998 344444444444333 889999999
Q ss_pred HHHhHhCCCCCCcccHHHHHHHH-----hccCCchHHHHHHHHHHHhCCCCchhHHHHH-HHHHHhcCChhHHHHHhccC
Q 007871 100 YVNMKRKGLLVDNYTYPFVLKAC-----GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGL-IGMYSKCGHMGCARSVFEGS 173 (586)
Q Consensus 100 ~~~m~~~~~~~~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~ 173 (586)
++++.+.... +...+..+.... ......+++.+.++ .......|+..+.... ...|...|++++|.+++.++
T Consensus 131 ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 131 VEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999987422 344554444440 11233466666666 4443444456656655 89999999999999999887
Q ss_pred CCC---ChhhHHHHHHHHHh-CCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCC-----CChhH-
Q 007871 174 EIK---DLVSWNLVLRGFVE-CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI-----KDLIS- 243 (586)
Q Consensus 174 ~~~---~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~-----~~~~~- 243 (586)
.+. +......+...|.. .++ +++..+++...+.+...+..+...+ .+.|+.++|.++++.+.+ |+..+
T Consensus 209 ~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~y-i~~G~~~~A~~~L~~~~~~~~~~~~~~~~ 286 (987)
T PRK09782 209 RQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATAL-AYRGEKARLQHYLIENKPLFTTDAQEKSW 286 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHH-HHCCCHHHHHHHHHhCcccccCCCccHHH
Confidence 653 44556677778887 366 8888887764466778888888988 999999999999988763 11111
Q ss_pred -----------------------------HHHHHHHHHhcCCHHHHHHHHhhCCC-------------------------
Q 007871 244 -----------------------------WNSMIDGYAKIGDLVAAQQLFNEMPE------------------------- 269 (586)
Q Consensus 244 -----------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------- 269 (586)
...++..+.+.++++.+.++..--..
T Consensus 287 ~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 366 (987)
T PRK09782 287 LYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLAR 366 (987)
T ss_pred HHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHH
Confidence 12235667778888877766442211
Q ss_pred ------C-ChhHHHHHHHHHHhCCCchHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHhccCC------------------
Q 007871 270 ------R-NVFSWSIMIDGYAQHGNPKEALYLFREMLCQ-G-VRPDVISVMGAISACAQVGA------------------ 322 (586)
Q Consensus 270 ------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g-~~~~~~~~~~l~~~~~~~~~------------------ 322 (586)
| +......+.-...+.|+.++|.++|+..... + -.++.....-++..+.+.+.
T Consensus 367 ~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 446 (987)
T PRK09782 367 LLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAE 446 (987)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccch
Confidence 0 2222333444567889999999999998762 1 22344444466666666544
Q ss_pred -------hhHHHHHHHHHHHc-CC-CC--chhHHHHHHHHHHhcCCHHHHHHHHhccC--CCCHhHHHHHHHHHHhcCCh
Q 007871 323 -------LDLGKWIHVFMKRS-RI-TM--DMIVQTALIDMYMKCGSLDEARRIFYSMT--KKNVISYNVMIAGLGMNGFG 389 (586)
Q Consensus 323 -------~~~a~~~~~~~~~~-~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 389 (586)
...+...+...... +. ++ +...+..+..++.. ++.++|...+.... .|+......+...+...|++
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~ 525 (987)
T PRK09782 447 QRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDY 525 (987)
T ss_pred hHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCH
Confidence 22222233333222 22 33 56778888888877 78888999777665 35544333445555789999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 007871 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469 (586)
Q Consensus 390 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 469 (586)
++|...|+++.. ..|+...+..+..++...|+.++|...++...+. .+.+...+..+.......|++++|...+++
T Consensus 526 eeAi~~~rka~~--~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 526 ATALAAWQKISL--HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred HHHHHHHHHHhc--cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999866 3566666777788889999999999999999882 344444454555555667999999999998
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCee
Q 007871 470 M-PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRS 548 (586)
Q Consensus 470 ~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 548 (586)
. ...|+...+..+..++.+.|++++|+..++++++.+|+++..+..++.++...|++++|+..+++..+.... ....
T Consensus 602 AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~--~~~a 679 (987)
T PRK09782 602 SLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD--DPAL 679 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHH
Confidence 7 566888899999999999999999999999999999999999999999999999999999999999875432 2111
Q ss_pred EEEE----------CCeEeEEecCCCCCCChhHHHHHHHHHH
Q 007871 549 VIEI----------DGNIKEFVSGEIFDVQSEELELVIQSFV 580 (586)
Q Consensus 549 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 580 (586)
+..+ ......|.......|+.+.|....-++.
T Consensus 680 ~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~ 721 (987)
T PRK09782 680 IRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQN 721 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH
Confidence 1111 1123333333356788877775554443
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.5e-22 Score=189.99 Aligned_cols=438 Identities=13% Similarity=0.079 Sum_probs=356.7
Q ss_pred HHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 007871 82 TMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCG 161 (586)
Q Consensus 82 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 161 (586)
.|..-..+.|++.+|++.-...-..+ +.+......+-..+....+.+....--....+. .+--..+|+.+...+-..|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhc
Confidence 44555668899999998776654442 223334444445555556666554443333332 2334568888999999999
Q ss_pred ChhHHHHHhccCCC---CChhhHHHHHHHHHhCCChhHHHHHHhhCC--CCChhHHHHHHHHHhhccCCHHHHHHHHHhC
Q 007871 162 HMGCARSVFEGSEI---KDLVSWNLVLRGFVECGEMGKAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHM 236 (586)
Q Consensus 162 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~ 236 (586)
+++.|+..++.+.+ ..+..|..+..++...|+.+.|...|.... .|+.....+-+..+....|++++|...+-+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 99999999987654 366889999999999999999999998887 6766666665555547789999999998776
Q ss_pred CCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHH
Q 007871 237 PIK---DLISWNSMIDGYAKIGDLVAAQQLFNEMPE--RN-VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310 (586)
Q Consensus 237 ~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~ 310 (586)
... =..+|+.|...+..+|+...|+..|++... |+ ..+|..|...|...+.+++|+..|.+..... +.....+
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~ 289 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAH 289 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhhc
Confidence 633 346799999999999999999999999886 43 4689999999999999999999999988752 3355678
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcC
Q 007871 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNG 387 (586)
Q Consensus 311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 387 (586)
..+...|...|.+|.|...|++.++.. +.-...|+.|..++...|++.+|...+.+... ....+.+.|...|...|
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~ 368 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQG 368 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence 888888999999999999999998875 22356899999999999999999999998773 45678899999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhhcCCHHHHHH
Q 007871 388 FGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK-LEHYSCLVDLLSRAGELEQALN 465 (586)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 465 (586)
..++|..+|....+ +.|.- ..++.|...|-++|++++|+..+++..+ +.|+ ...|+.++..|...|+.+.|++
T Consensus 369 ~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 369 KIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred cchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHH
Confidence 99999999999988 67765 5789999999999999999999999977 5665 6899999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 007871 466 IVESM-PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528 (586)
Q Consensus 466 ~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 528 (586)
.+.+. .+.|. ....+.|...|...|+..+|+..|+.++++.|+.+.++..++.++.--.+|.+
T Consensus 444 ~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 444 CYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99887 56664 56778899999999999999999999999999999999999988766665554
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.4e-22 Score=190.25 Aligned_cols=416 Identities=13% Similarity=0.066 Sum_probs=337.9
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC---CCChhhHHHHHHHHHhCCC
Q 007871 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE---IKDLVSWNLVLRGFVECGE 193 (586)
Q Consensus 117 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~ 193 (586)
.|..-..+.|++.+|++.....-... +.+....-.+-..+....+++....--.... .....+|..+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 34444567789999988766554432 2222233333344555555555433322222 2256789999999999999
Q ss_pred hhHHHHHHhhCC--CC-ChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChh---HHHHHHHHHHhcCCHHHHHHHHhhC
Q 007871 194 MGKAREVFDEMP--QK-DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLI---SWNSMIDGYAKIGDLVAAQQLFNEM 267 (586)
Q Consensus 194 ~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~ 267 (586)
+++|+.+++.+. +| ....|..+..++ ...|+.+.|...|.....-++. ..+.+...+...|++++|...+.+.
T Consensus 132 ~~~al~~y~~aiel~p~fida~inla~al-~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 132 LQDALALYRAAIELKPKFIDAYINLAAAL-VTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred HHHHHHHHHHHHhcCchhhHHHhhHHHHH-HhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 999999999998 44 456777788888 9999999999998887754443 3445566677789999999999887
Q ss_pred CC--CC-hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhH
Q 007871 268 PE--RN-VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIV 344 (586)
Q Consensus 268 ~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 344 (586)
.+ |. ..+|+.|...+-..|+...|+..|++.++.. +.-...|-.+...|...+.++.|...|.+..... +....+
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a 288 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVA 288 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhh
Confidence 75 43 4679999999999999999999999999763 2234578888999999999999999998887664 345667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhc
Q 007871 345 QTALIDMYMKCGSLDEARRIFYSMTK--K-NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSH 420 (586)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~ 420 (586)
+..+...|-..|.++-|+..+++..+ | -...|+.|..++...|++.+|...|.+... +.|+. ...+.|...+..
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYRE 366 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHH
Confidence 88888899999999999999998874 4 357899999999999999999999999988 55654 688999999999
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHH
Q 007871 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPN-LALWGTLLLACRNHQNVTLAEVV 498 (586)
Q Consensus 421 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 498 (586)
.|.+++|..+|..... -.+--...++.|...|-.+|++++|+..+++. .++|+ ...++.+...|-..|+.+.|.+.
T Consensus 367 ~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~ 444 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQC 444 (966)
T ss_pred hccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHH
Confidence 9999999999999877 34445678999999999999999999999887 67886 57899999999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 499 VEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 499 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
+.+++..+|.-+.++..|+.+|..+|+..+|++-|+...+..
T Consensus 445 y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 445 YTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999988754
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=8.6e-20 Score=189.80 Aligned_cols=415 Identities=11% Similarity=-0.022 Sum_probs=277.7
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhhHHHHHHHHHhCC
Q 007871 116 PFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI---KDLVSWNLVLRGFVECG 192 (586)
Q Consensus 116 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g 192 (586)
......+...|+++.|...|++.++. .|+...|..+..+|.+.|++++|++.++.... .+..+|..+..+|...|
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 34445556667777777777766653 35566666677777777777777777665442 24556666777777777
Q ss_pred ChhHHHHHHhhCC---CCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007871 193 EMGKAREVFDEMP---QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269 (586)
Q Consensus 193 ~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 269 (586)
++++|+..|.... ..+......++... ........+...++.-. ++...+..+...+ ..........-+....+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~a~~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERL-LKKFAESKAKEILETKP-ENLPSVTFVGNYL-QSFRPKPRPAGLEDSNE 285 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHH-HHHHHHHHHHHHHhcCC-CCCCCHHHHHHHH-HHccCCcchhhhhcccc
Confidence 7777776665443 11111111122211 11111223333333222 2222222222221 11111111111221111
Q ss_pred CC---hhHHHHHHHH---HHhCCCchHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCc
Q 007871 270 RN---VFSWSIMIDG---YAQHGNPKEALYLFREMLCQG-VRP-DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341 (586)
Q Consensus 270 ~~---~~~~~~l~~~---~~~~~~~~~A~~~~~~m~~~g-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 341 (586)
-+ ...+..+... ....+++++|...|++..+.+ ..| ....+..+...+...|++++|...++...+.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 11 1111111111 123468899999999998765 223 44567777778888999999999999988774 234
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 007871 342 MIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIA 417 (586)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~ 417 (586)
...|..+..++...|++++|...|+.+.+ .+...|..+...+...|++++|+..|++.... .| +...+..+..+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHH
Confidence 56778888889999999999999987763 46778899999999999999999999999884 45 45677888889
Q ss_pred hhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH--------HHHHHHHHHHHh
Q 007871 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPNL--------ALWGTLLLACRN 488 (586)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--------~~~~~l~~~~~~ 488 (586)
+.+.|++++|...++...+ ..+.+...+..++.++...|++++|++.|++. ...|+. ..++.....+..
T Consensus 443 ~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999988 45667889999999999999999999999886 333321 111222223445
Q ss_pred cCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 489 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
.|++++|+.+++++++.+|++..++..+++++.+.|++++|..+|++..+..
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999999999999987643
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=8.2e-20 Score=180.60 Aligned_cols=294 Identities=12% Similarity=0.084 Sum_probs=217.9
Q ss_pred HHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCh
Q 007871 250 GYAKIGDLVAAQQLFNEMPE--R-NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD---VISVMGAISACAQVGAL 323 (586)
Q Consensus 250 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~~~~ 323 (586)
.+...|++++|...|.++.+ | +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34556677777777777664 2 345666677777777777777777777766432221 23456666777777777
Q ss_pred hHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC------HhHHHHHHHHHHhcCChHHHHHH
Q 007871 324 DLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--KN------VISYNVMIAGLGMNGFGEEALKC 395 (586)
Q Consensus 324 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~A~~~ 395 (586)
+.|..+|+.+.+.. +.+..++..++.++...|++++|.+.++.+.+ |+ ...+..+...+...|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777776653 34556677777777777888888777777653 11 12345677778889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 007871 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP 474 (586)
Q Consensus 396 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 474 (586)
++++.+.. +.+...+..+...+...|++++|.++++++... +......++..++.+|...|++++|...++++ ...|
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99998742 233567778888999999999999999999873 22222466788999999999999999999987 4567
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh---cCCchHHHHHHHHHHhCCCccCCCe
Q 007871 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD---AGMWEHALRIRKMMRKRKIKKETGR 547 (586)
Q Consensus 475 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~ 547 (586)
+...+..++..+.+.|++++|..+++++.+..|+++... .+...+.. .|+.+++..++++|.++++.++|.+
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~-~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH-RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH-HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 777778888889999999999999999999999887444 44444443 5699999999999999999999974
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.8e-18 Score=179.16 Aligned_cols=325 Identities=10% Similarity=-0.041 Sum_probs=252.6
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHhhCC--CCChh-HHHHHHHHHhhccCCHHHHHHHHHhCC---CCChhHHHHHHHHHH
Q 007871 179 VSWNLVLRGFVECGEMGKAREVFDEMP--QKDAI-SWSIMIDGYRKKKGDISSARILFEHMP---IKDLISWNSMIDGYA 252 (586)
Q Consensus 179 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~-~~~~ll~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~ 252 (586)
.....++..+.+.|++++|+.+++... .|+.. ....+.... ...|+++.|...++++. +.+...+..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~-l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISP-LASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhH-hhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345566777888889999888888877 44443 333333344 67889999999888776 346778888888999
Q ss_pred hcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHH
Q 007871 253 KIGDLVAAQQLFNEMPE--R-NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329 (586)
Q Consensus 253 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 329 (586)
..|++++|...+++..+ | +...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|...
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 99999999999998875 3 467788888999999999999999998876532 233333333 347788999999999
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHH----HHHHHHHHHHC
Q 007871 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEE----ALKCFAQMETE 402 (586)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~----A~~~~~~m~~~ 402 (586)
++.+.+....++......+..++...|++++|...++.+.. .+...+..+...+...|++++ |...+++...
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~- 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ- 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh-
Confidence 99887775444445555667788899999999999988763 456778888999999999986 7999999888
Q ss_pred CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH-H
Q 007871 403 GIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPNLAL-W 479 (586)
Q Consensus 403 g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~ 479 (586)
..|+ ...+..+...+...|++++|...+++... ..+.+...+..++.+|...|++++|...++++ ...|+... +
T Consensus 279 -l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 279 -FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 4454 56888889999999999999999999888 34556777888999999999999999999887 34565433 3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 480 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
..+..++...|++++|...|+++.+..|.+.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 3455668899999999999999999988865
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=1.9e-17 Score=175.34 Aligned_cols=392 Identities=10% Similarity=-0.026 Sum_probs=190.5
Q ss_pred HHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChh
Q 007871 85 RGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG 164 (586)
Q Consensus 85 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 164 (586)
......|+.++|++++.+..... +.+...+..+...+...|++++|.+++++.++.. +.+...+..++..+...|+++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 33344455555555555444311 1222234444444445555555555555544421 122333344444444444444
Q ss_pred HHHHHhccCCC---CChhhHHHHHHHHHhCCChhHHHHHHhhCC--CCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCC
Q 007871 165 CARSVFEGSEI---KDLVSWNLVLRGFVECGEMGKAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239 (586)
Q Consensus 165 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~ 239 (586)
+|...+++... .+.. +..+...+...|+.++|+..++++. .|+
T Consensus 101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~------------------------------- 148 (765)
T PRK10049 101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ------------------------------- 148 (765)
T ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------------------------------
Confidence 44444443321 1223 4444444444444444444444443 222
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCh------hHHHHHHHHHH-----hCCCc---hHHHHHHHHHHHC-CC
Q 007871 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPE-RNV------FSWSIMIDGYA-----QHGNP---KEALYLFREMLCQ-GV 303 (586)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~l~~~~~-----~~~~~---~~A~~~~~~m~~~-g~ 303 (586)
+...+..+...+...|..+.|+..++.... |+. .....++.... ..+++ ++|+..++.+.+. ..
T Consensus 149 ~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~ 228 (765)
T PRK10049 149 TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHD 228 (765)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhccc
Confidence 333344444445555555555555555443 110 01111111111 11223 5666667766643 11
Q ss_pred CCCHH-HHH----HHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC----
Q 007871 304 RPDVI-SVM----GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--KN---- 372 (586)
Q Consensus 304 ~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~---- 372 (586)
.|+.. .+. ..+.++...|+.++|...|+.+.+.+.+........+..+|...|++++|...|+.+.+ |.
T Consensus 229 ~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~ 308 (765)
T PRK10049 229 NPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADL 308 (765)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC
Confidence 22211 111 11223345566777777777766654221111122245566666777777776666542 11
Q ss_pred -HhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHhhccCCHHHHHHHHHHhHHh
Q 007871 373 -VISYNVMIAGLGMNGFGEEALKCFAQMETEG-----------IPKDD---LIFLGVLIACSHSGLATEGYRIFQSMKRH 437 (586)
Q Consensus 373 -~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-----------~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 437 (586)
......+..++...|++++|..+++++.... ..|+. ..+..+...+...|+.++|+++++++..
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~- 387 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY- 387 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 1234445556666777777777777666531 01221 2334455556666666666666666665
Q ss_pred hCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcch
Q 007871 438 CGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512 (586)
Q Consensus 438 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 512 (586)
..|.+...+..++..+...|++++|++.+++. ...|+ ...+...+..+...|++++|+..++++++..|+++.+
T Consensus 388 -~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 388 -NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred -hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 34455666666666666666666666666655 23343 4444445555666666666666666666666666633
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=9.4e-18 Score=174.60 Aligned_cols=422 Identities=12% Similarity=0.003 Sum_probs=294.6
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007871 80 HNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSK 159 (586)
Q Consensus 80 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 159 (586)
+......+.+.|++++|++.|++..+. .|+...|..+..++...|++++|...+...++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 456677888999999999999998875 5677788889999999999999999999988854 3345688889999999
Q ss_pred cCChhHHHHHhccCCCC---ChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhC
Q 007871 160 CGHMGCARSVFEGSEIK---DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236 (586)
Q Consensus 160 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~ 236 (586)
.|++++|...|...... +......++..+........+...++.- .++...+. .+..+ ......+....-++..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK-PENLPSVT-FVGNY-LQSFRPKPRPAGLEDS 283 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHH-HHHHH-HHHccCCcchhhhhcc
Confidence 99999998877544321 1111112222222211122333333322 12211221 12222 1111111111111211
Q ss_pred CCCCh---hHHHHHHHH---HHhcCCHHHHHHHHhhCCC-----C-ChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCC
Q 007871 237 PIKDL---ISWNSMIDG---YAKIGDLVAAQQLFNEMPE-----R-NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304 (586)
Q Consensus 237 ~~~~~---~~~~~l~~~---~~~~g~~~~A~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 304 (586)
...+. ..+..+... ....+++++|.+.|+...+ | ....|+.+...+...|++++|+..+++..+.. +
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P 362 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-P 362 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 11111 111111111 1234788999999988764 2 34568888888999999999999999998763 3
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHH
Q 007871 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIA 381 (586)
Q Consensus 305 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~ 381 (586)
-....|..+..++...|++++|...++.+.+.. +.+..++..+..++...|++++|...|++..+ .+...+..+..
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~ 441 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV 441 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 345678888888999999999999999998875 44677888899999999999999999998863 35677888889
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCCh------HHHHHHHHHHh
Q 007871 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL------EHYSCLVDLLS 455 (586)
Q Consensus 382 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~~l~~~~~ 455 (586)
.+.+.|++++|+..|++.... .+.+...++.+..++...|++++|...|+..... ....+. ..++.....+.
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL-EKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCccccccccHHHHHHHHHHHHH
Confidence 999999999999999998874 2334678888999999999999999999998772 211111 11222223344
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc
Q 007871 456 RAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511 (586)
Q Consensus 456 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 511 (586)
..|++++|.+++++. ...| +...+..+...+...|++++|+.+|+++.++.+....
T Consensus 520 ~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 579999999999886 4455 4456788889999999999999999999998766443
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=7.7e-18 Score=174.49 Aligned_cols=324 Identities=10% Similarity=-0.028 Sum_probs=266.9
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhC
Q 007871 212 WSIMIDGYRKKKGDISSARILFEHMP---IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE--R-NVFSWSIMIDGYAQH 285 (586)
Q Consensus 212 ~~~ll~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~ 285 (586)
...++..+ .+.|+.+.|..+++... +.+...+..++.+....|++++|...|+++.+ | +...+..+...+...
T Consensus 45 ~~~~~~~~-~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIAC-LRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHH-HhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 33445555 78999999999988775 44667777888888899999999999999975 3 567788889999999
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 007871 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365 (586)
Q Consensus 286 ~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 365 (586)
|++++|...++++.+.. +.+...+..+..++...|+.++|...++.+......+ ...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHH
Confidence 99999999999999863 4456678888899999999999999999887765433 3333333 3478899999999999
Q ss_pred hccCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHH----HHHHHHHhHHh
Q 007871 366 YSMTKK----NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE----GYRIFQSMKRH 437 (586)
Q Consensus 366 ~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~ 437 (586)
+.+.+. +...+..+...+...|++++|+..++++.... +.+...+..+...+...|++++ |...++++.+
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~- 278 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ- 278 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh-
Confidence 987642 23344556778899999999999999999853 3345678888999999999986 8999999988
Q ss_pred hCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHH
Q 007871 438 CGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515 (586)
Q Consensus 438 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 515 (586)
..+.+...+..++..+...|++++|...+++. ...| +...+..+..++...|++++|+..++++.+.+|.++..+..
T Consensus 279 -l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 279 -FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 34567889999999999999999999999987 3445 46667778888999999999999999999999999877777
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 516 LSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 516 l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
++.++...|++++|...|++..+....
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 889999999999999999998776543
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=8e-18 Score=178.23 Aligned_cols=384 Identities=9% Similarity=-0.006 Sum_probs=259.3
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC---CChhhHHHHHHHHHhCCChhHHHHHHhhCC--CCC-hhHHHHHHHHHhhcc
Q 007871 150 VNGLIGMYSKCGHMGCARSVFEGSEI---KDLVSWNLVLRGFVECGEMGKAREVFDEMP--QKD-AISWSIMIDGYRKKK 223 (586)
Q Consensus 150 ~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~ll~~~~~~~ 223 (586)
..-.+.+....|+.++|++++.+... .+...+..+...+...|++++|..++++.. .|+ ...+..+...+ ...
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l-~~~ 96 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL-ADA 96 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHC
Confidence 33344444455555555555544332 122334555555555555555555555543 232 22233333333 555
Q ss_pred CCHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCCchHHHHHHHH
Q 007871 224 GDISSARILFEHMP---IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE--R-NVFSWSIMIDGYAQHGNPKEALYLFRE 297 (586)
Q Consensus 224 g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 297 (586)
|+.++|...+++.. +.+.. +..+..++...|+.++|+..++++.+ | +...+..+..++...+..+.|+..++.
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 66666666655543 23555 77777788889999999999998875 3 456667778888889999999998886
Q ss_pred HHHCCCCCCH------HHHHHHHHHHh-----ccCCh---hHHHHHHHHHHHc-CCCCchh-HHH----HHHHHHHhcCC
Q 007871 298 MLCQGVRPDV------ISVMGAISACA-----QVGAL---DLGKWIHVFMKRS-RITMDMI-VQT----ALIDMYMKCGS 357 (586)
Q Consensus 298 m~~~g~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~g~ 357 (586)
... .|+. ......+.... ..+++ ++|...++.+.+. ...|+.. .+. ..+.++...|+
T Consensus 176 ~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 176 ANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred CCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 553 2321 01112222221 12233 6778888888754 2222221 111 11334457799
Q ss_pred HHHHHHHHhccCCCC---H-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhccCCHHHHHHH
Q 007871 358 LDEARRIFYSMTKKN---V-ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK---DDLIFLGVLIACSHSGLATEGYRI 430 (586)
Q Consensus 358 ~~~a~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~ 430 (586)
+++|...|+.+.+.+ + .....+..+|...|++++|+..|+++....... .......+..++...|++++|.++
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 999999999988532 1 122335778999999999999999987642111 124566677788999999999999
Q ss_pred HHHhHHhhCCC------------CC---hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 007871 431 FQSMKRHCGIE------------PK---LEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVT 493 (586)
Q Consensus 431 ~~~~~~~~~~~------------~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 493 (586)
++.+... .+ |+ ...+..++..+...|++++|+++++++ ...| +...+..+...+...|+++
T Consensus 333 l~~~~~~--~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 333 TAHTINN--SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHhhc--CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 9999873 22 22 234567788999999999999999987 3334 6778888888899999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 494 LAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 494 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
+|+..++++++..|+++..+..++..+.+.|++++|..+++++.+..
T Consensus 411 ~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 411 AAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999998753
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=4.8e-18 Score=167.96 Aligned_cols=279 Identities=14% Similarity=0.087 Sum_probs=205.5
Q ss_pred cCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CC------hhHHHHHHHHHHhCCCchHHH
Q 007871 223 KGDISSARILFEHMP---IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE-RN------VFSWSIMIDGYAQHGNPKEAL 292 (586)
Q Consensus 223 ~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~------~~~~~~l~~~~~~~~~~~~A~ 292 (586)
.|++++|...|+++. +.+..++..+...+...|++++|..+++.+.. ++ ...+..++..|.+.|++++|.
T Consensus 48 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~ 127 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAE 127 (389)
T ss_pred cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 344444555544443 12344566666666677777777777666554 11 235667777788888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCch----hHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007871 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM----IVQTALIDMYMKCGSLDEARRIFYSM 368 (586)
Q Consensus 293 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~ 368 (586)
.+|+++.+.. +++..++..++..+...|++++|...++.+.+.+..+.. ..+..+...+...|++++|...|+++
T Consensus 128 ~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 128 ELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8888887652 445667777788888888888888888887766533321 23456777788889999999998887
Q ss_pred CC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChH
Q 007871 369 TK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445 (586)
Q Consensus 369 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 445 (586)
.+ .+...+..+...+.+.|++++|.++++++...+......++..++.+|...|++++|...++++.+. .|+..
T Consensus 207 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~ 283 (389)
T PRK11788 207 LAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGAD 283 (389)
T ss_pred HhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCch
Confidence 63 3456778888999999999999999999987432222456788899999999999999999999873 46666
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHhc
Q 007871 446 HYSCLVDLLSRAGELEQALNIVESM-PMKPNLALWGTLLLACRN---HQNVTLAEVVVEGLVEL 505 (586)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 505 (586)
.+..++..+.+.|++++|..+++++ ...|+...+..++..+.. .|+.+++..+++++.+.
T Consensus 284 ~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 284 LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 7788999999999999999999876 556888888888877654 55888999999988874
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=4.4e-17 Score=161.67 Aligned_cols=428 Identities=11% Similarity=0.035 Sum_probs=257.1
Q ss_pred CcccHHHHHHHHhccCCchHHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcCChhHHHHHhccCCCC---C-hhhHHHH
Q 007871 111 DNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFL--CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK---D-LVSWNLV 184 (586)
Q Consensus 111 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~-~~~~~~l 184 (586)
|+...+.|.+.+.-.|++..+..+...+...... .-...|--+.++|...|++++|...|.+.... + +..+.-+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 3344445555555555555555555555543211 01122334555555666666666555433321 1 2334445
Q ss_pred HHHHHhCCChhHHHHHHhhCC--CCChh-HHHHHHHHHhhccC----CHHHHHHHHHhCCCC---ChhHHHHHHHHHHhc
Q 007871 185 LRGFVECGEMGKAREVFDEMP--QKDAI-SWSIMIDGYRKKKG----DISSARILFEHMPIK---DLISWNSMIDGYAKI 254 (586)
Q Consensus 185 ~~~~~~~g~~~~A~~~~~~~~--~~~~~-~~~~ll~~~~~~~g----~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~ 254 (586)
...+++.|+.+.+...|+.+. .||.. +...+...| ...+ ..+.|..++.....+ |...|-.+...+-..
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Ly-a~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLY-AHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHH-HhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 555566666666666665555 33322 222222222 3322 345555555444422 444444444444333
Q ss_pred CC------HHHHHHHHhhCC-CCChhHHHHHHHHHHhCCCchHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHh
Q 007871 255 GD------LVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ---GVRPDV------ISVMGAISACA 318 (586)
Q Consensus 255 g~------~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---g~~~~~------~~~~~l~~~~~ 318 (586)
.- +..|..++..-. ...+...|.+.......|++..|...|.+.... ...++. .+--.+....-
T Consensus 428 d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 428 DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 22 222222222221 244556666666666777777777777766543 112222 12223344445
Q ss_pred ccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHH
Q 007871 319 QVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKC 395 (586)
Q Consensus 319 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~ 395 (586)
..++.+.|...|..+.+.. +.-+..|-.+..+....++..+|...++... ..++..++.+...+.....+..|.+-
T Consensus 508 ~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~ 586 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKK 586 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccH
Confidence 5667777777777766652 1112233333322233356667777777665 35666777777788888777777776
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHhhc------------cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHH
Q 007871 396 FAQMETE-GIPKDDLIFLGVLIACSH------------SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462 (586)
Q Consensus 396 ~~~m~~~-g~~p~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 462 (586)
|....+. ...+|..+...|.+.|.. .+..++|+++|.++.+ ..|.|...-+.++-+++..|++.+
T Consensus 587 f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 587 FETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred HHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchH
Confidence 6665542 223566666667665542 2457789999999888 567788888899999999999999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 463 ALNIVESMP--MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK--ADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 463 A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
|..+|.+.. ......+|..+..+|...|+|..|+++|+...+.. .+++.+...|++++.+.|++.+|.+.+.....
T Consensus 665 A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 665 ARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999883 22356788999999999999999999999998864 56788999999999999999999999888776
Q ss_pred CCCc
Q 007871 539 RKIK 542 (586)
Q Consensus 539 ~~~~ 542 (586)
....
T Consensus 745 ~~p~ 748 (1018)
T KOG2002|consen 745 LAPS 748 (1018)
T ss_pred hCCc
Confidence 5443
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=3.3e-16 Score=162.62 Aligned_cols=432 Identities=9% Similarity=0.016 Sum_probs=279.4
Q ss_pred ccCCCCChHHHHHHHhcc--CCCCcc-hHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcc-cHHHH--HHHHhccCCc
Q 007871 55 TSPNTLNMDQAERLFNQI--YQPNTY-MHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNY-TYPFV--LKACGVLMGL 128 (586)
Q Consensus 55 ~~~~~~~~~~A~~~~~~~--~~~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~l--l~~~~~~~~~ 128 (586)
..+. |+++.|+..|++. ..|+.. ....++..+...|+.++|+..+++.. .|+.. .+..+ ...+...|++
T Consensus 44 ~~r~-Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 44 RARA-GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHhC-CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 5566 8888888888877 334431 22277777777788888888888776 22222 22223 4466667888
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHh--CCChhHHHHHHhhCC-
Q 007871 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE--CGEMGKAREVFDEMP- 205 (586)
Q Consensus 129 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~- 205 (586)
++|.++++++.+.. +.++..+..++..+...++.++|++.++++...++.....+..++.. .++..+|+..++++.
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 88888888887754 22355666777777777888888887777765443332223334433 344444677776666
Q ss_pred -CCC-hhHHHHHHHHHhhccCCHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 007871 206 -QKD-AISWSIMIDGYRKKKGDISSARILFEHMPIK-DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282 (586)
Q Consensus 206 -~~~-~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 282 (586)
.|+ ...+..+..++ .+.|-...|.++.+.-+.- +...+.-+ +.+.|.+.......++.
T Consensus 198 ~~P~n~e~~~~~~~~l-~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~a~~~~~---------- 258 (822)
T PRK14574 198 LAPTSEEVLKNHLEIL-QRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRMAVLPTR---------- 258 (822)
T ss_pred hCCCCHHHHHHHHHHH-HHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhhcccccc----------
Confidence 343 33334444444 5556666666555543310 11110000 00111111111100000
Q ss_pred HhCCC---chHHHHHHHHHHHC-C-CCCCHHH----HHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 007871 283 AQHGN---PKEALYLFREMLCQ-G-VRPDVIS----VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353 (586)
Q Consensus 283 ~~~~~---~~~A~~~~~~m~~~-g-~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 353 (586)
....+ .+.|+.-++.+... + .++.... ..-.+-++...++..++...|+.+...+.+....+-..+.++|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 00111 24555555555542 1 1222111 22344567778888888888888888887767777888888888
Q ss_pred hcCCHHHHHHHHhccCCC---------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCCH---HH
Q 007871 354 KCGSLDEARRIFYSMTKK---------NVISYNVMIAGLGMNGFGEEALKCFAQMETEGI-----------PKDD---LI 410 (586)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-----------~p~~---~~ 410 (586)
..++.++|..+++.+..+ +......|..+|...+++++|..+++++.+.-. .||+ ..
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 888999998888877531 233356788889999999999999999887311 2333 23
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 007871 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRN 488 (586)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 488 (586)
+..++..+...|+..+|++.++.+.. .-|-|......+...+...|.+.+|++.++.. ...| +..+....+.++..
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence 45567778899999999999999987 56779999999999999999999999999776 3445 45666777888889
Q ss_pred cCChHHHHHHHHHHHhcCCCCcchH
Q 007871 489 HQNVTLAEVVVEGLVELKADDCGLY 513 (586)
Q Consensus 489 ~~~~~~a~~~~~~~~~~~p~~~~~~ 513 (586)
.+++.+|..+.+.+.+..|+++..-
T Consensus 497 l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 497 LQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999999544
No 25
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=5.5e-18 Score=153.88 Aligned_cols=473 Identities=14% Similarity=0.080 Sum_probs=303.5
Q ss_pred hHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc----CCC----CcchHHHHHH
Q 007871 14 PLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI----YQP----NTYMHNTMIR 85 (586)
Q Consensus 14 ~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~----~~~----~~~~~~~ll~ 85 (586)
+|.+-+....-..+|...++.+++....|+......-+.+++.+. ..+.+|++++.-. |.- .....+.+.-
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kk-r~fskaikfyrmaldqvpsink~~rikil~nigv 284 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKK-REFSKAIKFYRMALDQVPSINKDMRIKILNNIGV 284 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeeh-hhHHHHHHHHHHHHhhccccchhhHHHHHhhcCe
Confidence 333334444456677777777777777777777665565566666 7777777776433 221 1223445555
Q ss_pred HHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhH
Q 007871 86 GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGC 165 (586)
Q Consensus 86 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 165 (586)
.+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+.+...+.|..|+.....||..-|..
T Consensus 285 tfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~------------- 349 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK------------- 349 (840)
T ss_pred eEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC-------------
Confidence 666777777777777776654 45555444444455556777777777777776544444332210
Q ss_pred HHHHhccCCCCChhhH-----HHHHHHHHhCCCh--hHHHHHHhhCC----CCCh-hHHHHHHHHHhhccCCHHHHHHHH
Q 007871 166 ARSVFEGSEIKDLVSW-----NLVLRGFVECGEM--GKAREVFDEMP----QKDA-ISWSIMIDGYRKKKGDISSARILF 233 (586)
Q Consensus 166 a~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~--~~A~~~~~~~~----~~~~-~~~~~ll~~~~~~~g~~~~a~~~~ 233 (586)
.-..|+.... +..++-.-+.+.. ++++-.--++. .|+- ..+...+..+ ......+.|..+
T Consensus 350 ------~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~l-k~s~~~~la~dl- 421 (840)
T KOG2003|consen 350 ------EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESL-KASQHAELAIDL- 421 (840)
T ss_pred ------CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHH-HHhhhhhhhhhh-
Confidence 0001111111 1122222222211 11111111111 2221 1122222222 111111111111
Q ss_pred HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHH----HHH-HHHh-CCCchHHHHHHHHHHHCCCCCCH
Q 007871 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSI----MID-GYAQ-HGNPKEALYLFREMLCQGVRPDV 307 (586)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----l~~-~~~~-~~~~~~A~~~~~~m~~~g~~~~~ 307 (586)
--.-..-+.+.|+++.|.+++.-+.+.|..+-.+ |-. -|.+ ..++..|..+-+..+... .-+.
T Consensus 422 ----------ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~ 490 (840)
T KOG2003|consen 422 ----------EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNA 490 (840)
T ss_pred ----------hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCH
Confidence 0111234678888888888888877655433222 211 1222 345677777666665432 3344
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHH
Q 007871 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLG 384 (586)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~ 384 (586)
.....-.......|++++|...|++.....-......|+ +.-.+-..|++++|+++|-++. ..++.....+...|-
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444444445567789999999999988765333333333 3334667899999999997765 467888888899999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHH
Q 007871 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL 464 (586)
Q Consensus 385 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 464 (586)
...++..|++++.+.... ++.|+..+.-|...|-+.|+-..|.+++-.--+ -++-+..+...|..-|....-+++|+
T Consensus 570 ~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai 646 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAI 646 (840)
T ss_pred HhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999887764 555678899999999999999999998877766 56779999999999999999999999
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 007871 465 NIVESM-PMKPNLALWGTLLLAC-RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM 525 (586)
Q Consensus 465 ~~~~~~-~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 525 (586)
.+|++. -++|+..-|..++.+| .+.|++++|..+|+......|.+..++..|.+++...|.
T Consensus 647 ~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 647 NYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999988 4789999999988885 578999999999999999999999999999999888875
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.5e-16 Score=157.89 Aligned_cols=473 Identities=13% Similarity=0.098 Sum_probs=349.8
Q ss_pred ChHHHHHHHhcc---CCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCC--CCcccHHHHHHHHhccCCchHHHHHH
Q 007871 61 NMDQAERLFNQI---YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL--VDNYTYPFVLKACGVLMGLVEGTEIH 135 (586)
Q Consensus 61 ~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~ 135 (586)
.+..+..++... .+.|+...+.|.+.|.-.|++..++++...+...... .-...|-.+.+++-..|++++|...|
T Consensus 251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 344555555554 4567888899999999999999999999988765311 12345778889999999999999999
Q ss_pred HHHHHhCCCCchh--HHHHHHHHHHhcCChhHHHHHhccCCC---CChhhHHHHHHHHHhCC----ChhHHHHHHhhCC-
Q 007871 136 GEVVKMGFLCDVF--VVNGLIGMYSKCGHMGCARSVFEGSEI---KDLVSWNLVLRGFVECG----EMGKAREVFDEMP- 205 (586)
Q Consensus 136 ~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~- 205 (586)
.+..+.. ++.+ .+-.|..+|.+.|+++.+...|+.+.. .+..+...+...|+..+ ..+.|..++.+..
T Consensus 331 ~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 331 MESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 8887754 5544 445788999999999999999988754 35566666777776664 5677888877777
Q ss_pred --CCChhHHHHHHHHHhhccCC------HHHHHHHHHh-CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------
Q 007871 206 --QKDAISWSIMIDGYRKKKGD------ISSARILFEH-MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE------- 269 (586)
Q Consensus 206 --~~~~~~~~~ll~~~~~~~g~------~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 269 (586)
..|...|..+...+ ...+- +..|..++.. +....+...|.+...+...|+++.|...|+....
T Consensus 409 ~~~~d~~a~l~laql~-e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 409 QTPVDSEAWLELAQLL-EQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred cccccHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 33455555555544 33222 3344433332 2346888999999999999999999999988753
Q ss_pred CCh------hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCch
Q 007871 270 RNV------FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV-ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342 (586)
Q Consensus 270 ~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 342 (586)
++. .+-..+...+-..++++.|.+.|....+. -|.- ..|..+.......+...+|...++.+...+ ..++
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np 564 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNP 564 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCc
Confidence 222 12334556666778999999999999986 3443 344444434445578888988888887765 4456
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccC-----CCCHhHHHHHHHHHHh------------cCChHHHHHHHHHHHHCCCC
Q 007871 343 IVQTALIDMYMKCGSLDEARRIFYSMT-----KKNVISYNVMIAGLGM------------NGFGEEALKCFAQMETEGIP 405 (586)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~m~~~g~~ 405 (586)
..++.+...|.....+..|.+-|..+. .+|+.+.-+|.+.|.+ .+..++|+++|.+.+.. -+
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dp 643 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN-DP 643 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-Cc
Confidence 666667778888888888888555544 2466666666665542 24567899999988874 34
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHH
Q 007871 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM----PMKPNLALWGT 481 (586)
Q Consensus 406 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ 481 (586)
-|...-+.+..+++..|++..|..+|.+..+. ......+|-.++.+|..+|++-.|+++|+.. ..+.++.....
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 46678888888999999999999999999983 3456678889999999999999999999876 23458889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc-------------------CCchHHHHHHHHHHhCCCc
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA-------------------GMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~m~~~~~~ 542 (586)
|..++...|.+.+|...+..+....|.++.+...++-+..+. +..+.|.++|..|...+-+
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999888877665433 3355677777777665544
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=1.3e-14 Score=150.90 Aligned_cols=423 Identities=9% Similarity=-0.030 Sum_probs=289.2
Q ss_pred HccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHH---HHHHhcCCCchhHH
Q 007871 21 ISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTM---IRGYTQSSNPQKAL 97 (586)
Q Consensus 21 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~~A~ 97 (586)
..|++..|...+....+.+..-.+.++ .++. ++... |+.++|+..+++...|+...+..+ ...+...|++++|+
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~-l~~~~-G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQ-IAGWA-GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHH-HHHH-HHHHc-CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 568999999999999987533223344 7777 78888 999999999999976654444433 34677889999999
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC--
Q 007871 98 SFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI-- 175 (586)
Q Consensus 98 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-- 175 (586)
++|+++.+.... +...+..++..+...++.++|.+.++.+.+. .|+...+..++..+...++..+|++.++++.+
T Consensus 123 ely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 999999987433 4566777788889999999999999999875 46666665565556556777679999988764
Q ss_pred -CChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCC--Ch-hHHHHHHHHH
Q 007871 176 -KDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK--DL-ISWNSMIDGY 251 (586)
Q Consensus 176 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~--~~-~~~~~l~~~~ 251 (586)
.+...+..+..++.+.|-...|+++...-. +..+-..... =..+.+.+..+....+ +. .-|.
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p--~~f~~~~~~~------l~~~~~a~~vr~a~~~~~~~~~r~~------ 265 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENP--NLVSAEHYRQ------LERDAAAEQVRMAVLPTRSETERFD------ 265 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc--cccCHHHHHH------HHHHHHHHHHhhcccccccchhhHH------
Confidence 367778889999999999999999888754 2211111100 0111122222211111 00 0000
Q ss_pred HhcCCHHHHHHHHhhCC----C-CCh-----hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007871 252 AKIGDLVAAQQLFNEMP----E-RNV-----FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321 (586)
Q Consensus 252 ~~~g~~~~A~~~~~~~~----~-~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 321 (586)
-.+.|+.-++.+. . |.. .+..-.+-++...|++.++++.|+.+...|.+....+-..+..+|...+
T Consensus 266 ----~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 266 ----IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred ----HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 1122222222222 1 211 1222344566777788888888888887776555566777778888888
Q ss_pred ChhHHHHHHHHHHHcCC-----CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C---------------CH-hHHHH
Q 007871 322 ALDLGKWIHVFMKRSRI-----TMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--K---------------NV-ISYNV 378 (586)
Q Consensus 322 ~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~---------------~~-~~~~~ 378 (586)
++++|..+|+.+..... +++......|.-+|...+++++|..+++.+.+ | |- ..+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 88888888877755431 22333356677778888888888888777653 1 11 23455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC
Q 007871 379 MIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458 (586)
Q Consensus 379 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (586)
++..+...|+..+|++.++++... -+-|......+...+...|.+.+|++.++.... -.+.+..+....+.++...|
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQ 498 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhh
Confidence 677788899999999999999774 344667888888888899999999999976655 34446677778888888999
Q ss_pred CHHHHHHHHHhC
Q 007871 459 ELEQALNIVESM 470 (586)
Q Consensus 459 ~~~~A~~~~~~~ 470 (586)
++++|..+.+..
T Consensus 499 e~~~A~~~~~~l 510 (822)
T PRK14574 499 EWHQMELLTDDV 510 (822)
T ss_pred hHHHHHHHHHHH
Confidence 999998888666
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.78 E-value=2.6e-13 Score=129.39 Aligned_cols=507 Identities=11% Similarity=0.028 Sum_probs=404.4
Q ss_pred CchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHHHHhcCCCchhHHHHH
Q 007871 24 TTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIRGYTQSSNPQKALSFY 100 (586)
Q Consensus 24 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~A~~~~ 100 (586)
+...-.+++....++ ++.++..|...+. . ...++|+-++.+. .+.+...| -++++...++.|..++
T Consensus 361 ~~~~K~RVlRKALe~-iP~sv~LWKaAVe-----l-E~~~darilL~rAveccp~s~dLw----lAlarLetYenAkkvL 429 (913)
T KOG0495|consen 361 DTKNKKRVLRKALEH-IPRSVRLWKAAVE-----L-EEPEDARILLERAVECCPQSMDLW----LALARLETYENAKKVL 429 (913)
T ss_pred HHHHHHHHHHHHHHh-CCchHHHHHHHHh-----c-cChHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHHHHHHH
Confidence 344446666666654 4566666666665 2 4566688888877 33344444 4455566788999999
Q ss_pred HHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHH----HHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC-
Q 007871 101 VNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEV----VKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI- 175 (586)
Q Consensus 101 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~- 175 (586)
+..++. ++-+..+|.+....--..|+.+...++.++- ...|+..+...|..=...|-+.|..-.+..+...+..
T Consensus 430 NkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi 508 (913)
T KOG0495|consen 430 NKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI 508 (913)
T ss_pred HHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh
Confidence 999876 6778888888777777889999988887754 4568888888888888888888988888887765432
Q ss_pred -----CChhhHHHHHHHHHhCCChhHHHHHHhhCC---CCChhHHHHHHHHHhhccCCHHHHHHHHHhCC---CCChhHH
Q 007871 176 -----KDLVSWNLVLRGFVECGEMGKAREVFDEMP---QKDAISWSIMIDGYRKKKGDISSARILFEHMP---IKDLISW 244 (586)
Q Consensus 176 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~---~~~~~~~ 244 (586)
.-..+|+.-...|.+.+.++-|..+|.... ..+...|......- ...|..+....+|++.. +.....|
T Consensus 509 gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~e-k~hgt~Esl~Allqkav~~~pkae~lw 587 (913)
T KOG0495|consen 509 GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFE-KSHGTRESLEALLQKAVEQCPKAEILW 587 (913)
T ss_pred ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHH-HhcCcHHHHHHHHHHHHHhCCcchhHH
Confidence 234689999999999999999999998887 34445555555555 67889999999988776 4577778
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007871 245 NSMIDGYAKIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321 (586)
Q Consensus 245 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 321 (586)
-.....+...|++..|..++.+.-+ .+...|-.-+........++.|..+|.+.... .|+...|..-+..---.+
T Consensus 588 lM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhh
Confidence 8888889999999999999998865 35678888888889999999999999998864 678888877777777889
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHH
Q 007871 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--K-NVISYNVMIAGLGMNGFGEEALKCFAQ 398 (586)
Q Consensus 322 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 398 (586)
+.++|..++++.++. ++.-...|..+.+.+-+.++++.|.+.|..-.+ | .+..|-.|...--+.|.+-+|..++++
T Consensus 666 ~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 666 NVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred hHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 999999999988877 344456788889999999999999999987664 3 556788888888889999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH
Q 007871 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478 (586)
Q Consensus 399 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~ 478 (586)
..-.+ +-+...|...++.-.+.|+.+.|..+..+..+ ..+.+...|..-|....+.++-..+...+.+.. .|+..
T Consensus 745 arlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphV 819 (913)
T KOG0495|consen 745 ARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHV 819 (913)
T ss_pred HHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchh
Confidence 87752 44667888999999999999999999999988 577788889988888888888777777787764 45566
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCeeEEEEC
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEID 553 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 553 (586)
...+...+.....+++|.++|+++++.+|++..+|..+-..+.+.|.-++-.+++.+.... .|.-|-.|.-+.
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 6677777888899999999999999999999999999999999999999999999988764 455555565444
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=6.5e-14 Score=126.88 Aligned_cols=296 Identities=15% Similarity=0.157 Sum_probs=192.9
Q ss_pred chhHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhcc--CCCCChHHH-H----------------------
Q 007871 12 KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTS--PNTLNMDQA-E---------------------- 66 (586)
Q Consensus 12 ~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~~~A-~---------------------- 66 (586)
-++|..+ .+++...++.-+++.|.+.|++.++..-..+++ +.+ .. .++.-| +
T Consensus 119 E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~-LV~~~Ns-~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 119 ENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFR-LVTYYNS-SNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred hhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHH-HHHhhcC-CCCcchhHHHHhhccccccccccccccccH
Confidence 3444443 366889999999999999998888877766655 222 11 111111 1
Q ss_pred -HHHhccCCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCC
Q 007871 67 -RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC 145 (586)
Q Consensus 67 -~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 145 (586)
+++-+..+.+..+|..||+++++--..++|.++|++..+...+.+..+||.+|.+-+-..+ ++++.+|....+.|
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTP 271 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCC
Confidence 1333334456789999999999999999999999999988889999999999987644333 88999999999999
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHh----ccCC----CCChhhHHHHHHHHHhCCChhH-HHHHHhhCC-----------
Q 007871 146 DVFVVNGLIGMYSKCGHMGCARSVF----EGSE----IKDLVSWNLVLRGFVECGEMGK-AREVFDEMP----------- 205 (586)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~a~~~~----~~~~----~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~----------- 205 (586)
|..|+|+++.+..+.|+++.|.+.+ .+|+ +|...+|..+|..+.+.++..+ |..++..+.
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 9999999999999999988776654 3333 5788888888888888877654 333333322
Q ss_pred -CCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhHHHHHHHH
Q 007871 206 -QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN---VFSWSIMIDG 281 (586)
Q Consensus 206 -~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~ 281 (586)
+.|...|...+..| ....+.+.|.++..-....+.. ..| .++ ..-|..+...
T Consensus 352 ~p~d~~FF~~AM~Ic-~~l~d~~LA~~v~~ll~tg~N~----------------------~~i-g~~~~~~fYyr~~~~l 407 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSIC-SSLRDLELAYQVHGLLKTGDNW----------------------KFI-GPDQHRNFYYRKFFDL 407 (625)
T ss_pred CCchhHHHHHHHHHH-HHhhhHHHHHHHHHHHHcCCch----------------------hhc-ChHHHHHHHHHHHHHH
Confidence 22334455555555 4555555555443222110000 000 011 1223344455
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCC
Q 007871 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338 (586)
Q Consensus 282 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 338 (586)
.++....+.....|+.|+-.-+-|+..+...++++..-.+.++-...++.+++..|.
T Consensus 408 icq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 408 ICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred HHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 555556666666666666665666666666666666666666666666666666553
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=1.6e-14 Score=131.68 Aligned_cols=443 Identities=11% Similarity=0.085 Sum_probs=282.3
Q ss_pred HHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHH-HHHHHhccCCchHHHHHHHHHHHhCCCCc----hhHHHHHHHHHH
Q 007871 84 IRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF-VLKACGVLMGLVEGTEIHGEVVKMGFLCD----VFVVNGLIGMYS 158 (586)
Q Consensus 84 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~ 158 (586)
..-|..+.-..+|+..|+-+.+....|+...... +-+.+.+.+++..|.+.++..+..-...+ ..+.+.+...+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 3445555666788888888888777777765433 44667778888888888877766432111 223444445567
Q ss_pred hcCChhHHHHHhccCCC--CChhhHHHHHHHHHhCCChhHHHHHHhhCC----CC------------ChhHHHHHHH---
Q 007871 159 KCGHMGCARSVFEGSEI--KDLVSWNLVLRGFVECGEMGKAREVFDEMP----QK------------DAISWSIMID--- 217 (586)
Q Consensus 159 ~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~------------~~~~~~~ll~--- 217 (586)
+.|.++.|...|++..+ |+..+-..|+-++..-|+.++..+.|.+|. .+ +....+..+.
T Consensus 288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~ 367 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDH 367 (840)
T ss_pred ecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHH
Confidence 78888888888876653 444443334445555677777777777776 11 1111111111
Q ss_pred --HHhhcc--CCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--hhHHHHHHHHHHhCCCchHH
Q 007871 218 --GYRKKK--GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN--VFSWSIMIDGYAQHGNPKEA 291 (586)
Q Consensus 218 --~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A 291 (586)
.. .+. .+-++++-.--.+..|-..+- | .-..+-+.+.+....... ...-..-...+.+.|+++.|
T Consensus 368 lk~~-ek~~ka~aek~i~ta~kiiapvi~~~------f--a~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 368 LKNM-EKENKADAEKAIITAAKIIAPVIAPD------F--AAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHH-HHhhhhhHHHHHHHHHHHhccccccc------h--hcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 01 000 011111111111111100000 0 000111111111111000 00001112357899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH--HhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 007871 292 LYLFREMLCQGVRPDVISVMGAISA--CAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369 (586)
Q Consensus 292 ~~~~~~m~~~g~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (586)
+++++-..+..-+.....-+.+-.. +....++..|.++-+..+... +-++.....-.......|++++|.+.+++..
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 9999988876533333333322222 223446777777776665443 2233322222233345689999999999999
Q ss_pred CCCHhHHHHHHH---HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHH
Q 007871 370 KKNVISYNVMIA---GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446 (586)
Q Consensus 370 ~~~~~~~~~l~~---~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 446 (586)
..|...-.+|.. .+-..|+.++|+.+|-++..- +..+...+..+...|....+...|++++.+... -++.|+.+
T Consensus 518 ~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~i 594 (840)
T KOG2003|consen 518 NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAI 594 (840)
T ss_pred cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHH
Confidence 877655444433 467889999999999888763 445667888888999999999999999988876 67778999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 007871 447 YSCLVDLLSRAGELEQALNIVE-SMPM-KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~-~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 524 (586)
...|.+.|-+.|+-..|.++.- .... +-+..+...|...|....-+++++.+|+++.-+.|+.......++.++.+.|
T Consensus 595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcc
Confidence 9999999999999999999754 4443 3478888888888999999999999999999999999888888999999999
Q ss_pred CchHHHHHHHHHHhC
Q 007871 525 MWEHALRIRKMMRKR 539 (586)
Q Consensus 525 ~~~~A~~~~~~m~~~ 539 (586)
+|..|.++|+...++
T Consensus 675 nyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRK 689 (840)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999998664
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.70 E-value=1.4e-12 Score=129.41 Aligned_cols=519 Identities=14% Similarity=0.094 Sum_probs=315.4
Q ss_pred HHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHHHHhcCC
Q 007871 15 LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIRGYTQSS 91 (586)
Q Consensus 15 l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~ 91 (586)
....+.+.|+.++|.+++.++++.. +..+..|..|-. +|-.. |+.+++...+--. .+.|...|..+.....+.|
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~-IyEqr-Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGE-IYEQR-GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHH-HHHHc-ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 3445667799999999999999986 445555666666 88888 9999999877544 6667788999999999999
Q ss_pred CchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHH----HHHHHHHhcCChhHHH
Q 007871 92 NPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVN----GLIGMYSKCGHMGCAR 167 (586)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~a~ 167 (586)
++++|.-+|.+.++.. +++...+---...|-+.|+...|..-|.++.....+.|..-.. ..++.+...++-+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999874 3344444445566778899999999999999865433333333 3456677778778888
Q ss_pred HHhccCCC-----CChhhHHHHHHHHHhCCChhHHHHHHhhCCC----CC---------------------------hhH
Q 007871 168 SVFEGSEI-----KDLVSWNLVLRGFVECGEMGKAREVFDEMPQ----KD---------------------------AIS 211 (586)
Q Consensus 168 ~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~---------------------------~~~ 211 (586)
+.++.... -+...++.++..+.+..+++.|......+.. +| ...
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 88876543 2456788999999999999998887766541 11 111
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHhC----CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHH
Q 007871 212 WSIMIDGYRKKKGDISSARILFEHM----PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE----RNVFSWSIMIDGYA 283 (586)
Q Consensus 212 ~~~ll~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~ 283 (586)
+...+.....+.+...++..-+-.. ...++..|..+..+|...|++.+|+++|..+.. .+...|-.+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 1112221112333333333332111 123566788888889999999999999988875 45678888888888
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHH--------HcCCCCchhHHHHHHHHHHhc
Q 007871 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK--------RSRITMDMIVQTALIDMYMKC 355 (586)
Q Consensus 284 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~ 355 (586)
..|.++.|...|+..+... +-+...-.++...+.+.|+.++|.+.+..+. ..+..|...........+...
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 8999999999998888762 3344455667777888899998888887743 223455555555666777777
Q ss_pred CCHHHHHHHHhccCC---------C-----------------CHhHHHHHHHHHHhcCChHHHHHH------HHHHHHCC
Q 007871 356 GSLDEARRIFYSMTK---------K-----------------NVISYNVMIAGLGMNGFGEEALKC------FAQMETEG 403 (586)
Q Consensus 356 g~~~~a~~~~~~~~~---------~-----------------~~~~~~~l~~~~~~~~~~~~A~~~------~~~m~~~g 403 (586)
|+.++-..+-..|.. | ........+.+-.+.++.....+- +.--...|
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~ 619 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG 619 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence 877764443333321 0 111112222222222221111110 11111122
Q ss_pred CCCCH--HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChH----HHHHHHHHHhhcCCHHHHHHHHHhCC------
Q 007871 404 IPKDD--LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE----HYSCLVDLLSRAGELEQALNIVESMP------ 471 (586)
Q Consensus 404 ~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~------ 471 (586)
+..+. ..+..++.++.+.+++++|..+...+....-+..+.. .-...+.+....+++..|.+.+..+-
T Consensus 620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~ 699 (895)
T KOG2076|consen 620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY 699 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Confidence 22222 1344455566666666666666666655322222222 22233445556666666666666551
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-cchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 472 MKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD-CGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 472 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
..| ....|+..+....+.++-..-.+.+..+....|.+ +......+..+...+.|..|...|-+.-.
T Consensus 700 ~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~ 768 (895)
T KOG2076|consen 700 LDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR 768 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH
Confidence 112 22334434444444444444444444444444444 44444444555556666666665544433
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=4.4e-12 Score=121.18 Aligned_cols=480 Identities=15% Similarity=0.099 Sum_probs=378.0
Q ss_pred cCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHHHHhcCCCchhHHHH
Q 007871 23 KTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIRGYTQSSNPQKALSF 99 (586)
Q Consensus 23 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~A~~~ 99 (586)
...++|+-++...++. ++.+...+ - ++++. ..++.|.++++.. .+.+...|.+-...--.+|+.+...++
T Consensus 390 E~~~darilL~rAvec-cp~s~dLw----l-AlarL-etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 390 EEPEDARILLERAVEC-CPQSMDLW----L-ALARL-ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred cChHHHHHHHHHHHHh-ccchHHHH----H-HHHHH-HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 3445566666666554 22333333 3 35556 7788899888877 566778888777777788999888887
Q ss_pred HHH----hHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChhHHHHHhccC
Q 007871 100 YVN----MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCD--VFVVNGLIGMYSKCGHMGCARSVFEGS 173 (586)
Q Consensus 100 ~~~----m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~ 173 (586)
+.+ +...|+..+..-|..=...|-..|..-.+..+....+..|++.. ..+|..-...|.+.+.++.|+.+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 765 45678899999999989999999999999999999999887543 458999999999999999999999876
Q ss_pred CC---CChhhHHHHHHHHHhCCChhHHHHHHhhCC--CCChh-HHHHHHHHHhhccCCHHHHHHHHHhCC---CCChhHH
Q 007871 174 EI---KDLVSWNLVLRGFVECGEMGKAREVFDEMP--QKDAI-SWSIMIDGYRKKKGDISSARILFEHMP---IKDLISW 244 (586)
Q Consensus 174 ~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~-~~~~ll~~~~~~~g~~~~a~~~~~~~~---~~~~~~~ 244 (586)
.+ .+...|......=-..|..+.-..+|++.. .|... .|....... -..|++..|..++.... +.+...|
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~-w~agdv~~ar~il~~af~~~pnseeiw 621 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK-WKAGDVPAARVILDQAFEANPNSEEIW 621 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH-HhcCCcHHHHHHHHHHHHhCCCcHHHH
Confidence 54 356778777777777899999999999988 44443 344444445 67799999999988775 3477889
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC
Q 007871 245 NSMIDGYAKIGDLVAAQQLFNEMPE--RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV-ISVMGAISACAQVG 321 (586)
Q Consensus 245 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~ 321 (586)
.+-+...+...+++.|..+|.+... ++...|.--+...--.++.++|++++++.++. -|+- ..|..+...+.+.+
T Consensus 622 laavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHH
Confidence 9999999999999999999998864 78888887777777789999999999999886 4554 45667777888899
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 007871 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQ 398 (586)
Q Consensus 322 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 398 (586)
+.+.|...|..-.+. ++..+..|-.|...--+.|.+-.|..+++...- .+...|-..|..-.+.|+.+.|..++.+
T Consensus 700 ~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998888654443 355667888888888899999999999998762 4678899999999999999999999988
Q ss_pred HHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH
Q 007871 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NL 476 (586)
Q Consensus 399 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 476 (586)
..+. ++.+...|..-|...-+.++-......+++ ...|++..-.+...+....+++.|.+.|.+. +..| ..
T Consensus 779 ALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk------ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 779 ALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred HHHh-CCccchhHHHHHHhccCcccchHHHHHHHh------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 8875 566667777777766666664444433332 4567778888999999999999999999987 4445 56
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 477 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
.+|..+...+..+|.-+.-.+++.+.....|.+...|..+..--
T Consensus 852 D~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDI 895 (913)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhH
Confidence 88988999999999999999999999999999999888876443
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=2.7e-12 Score=116.57 Aligned_cols=418 Identities=13% Similarity=0.078 Sum_probs=259.4
Q ss_pred cchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHH--hccCCchHH-HHHHHHHHHhCCCCchhHHHHH
Q 007871 77 TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC--GVLMGLVEG-TEIHGEVVKMGFLCDVFVVNGL 153 (586)
Q Consensus 77 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l 153 (586)
+.+=|.|+.. ..+|...++.-+|+.|...|+......-..|++.. ....++.-+ .+.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3355566553 45677888888888888888777766655555432 233333322 23334444433 2223333
Q ss_pred HHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC----CCChhHHHHHHHHHhhccCCHHHH
Q 007871 154 IGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSA 229 (586)
Q Consensus 154 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~g~~~~a 229 (586)
+.|++.+ ++-+...+...++..+|.++++--..+.|.+++++-. +-+..+||.++.+- +-..+
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~-S~~~~---- 257 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGAS-SYSVG---- 257 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHH-Hhhcc----
Confidence 2343333 5555566667778888888888878888888877765 44556666666654 21111
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHhCCCch----HHHHHHHHHHHC
Q 007871 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP----ERNVFSWSIMIDGYAQHGNPK----EALYLFREMLCQ 301 (586)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~----~A~~~~~~m~~~ 301 (586)
.+++.+|. .||..|+|+++++..+.|+++ .|++++.+|.+.
T Consensus 258 -------------------------------K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKei 306 (625)
T KOG4422|consen 258 -------------------------------KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEI 306 (625)
T ss_pred -------------------------------HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 22223332 366666666666666666554 456677788888
Q ss_pred CCCCCHHHHHHHHHHHhccCChhHH-HHHHHHHHHc----CCC----CchhHHHHHHHHHHhcCCHHHHHHHHhccCC--
Q 007871 302 GVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRS----RIT----MDMIVQTALIDMYMKCGSLDEARRIFYSMTK-- 370 (586)
Q Consensus 302 g~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~----~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 370 (586)
|+.|...+|..++..+.+.++..+. ..+..++... .++ .+...|...+..|.+..+.+-|..+..-+..
T Consensus 307 GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~ 386 (625)
T KOG4422|consen 307 GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD 386 (625)
T ss_pred CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence 8888888888888888877776543 3333333322 222 2334556667777777777777766554432
Q ss_pred ------CC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCC
Q 007871 371 ------KN---VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441 (586)
Q Consensus 371 ------~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 441 (586)
++ ..-|..+....++....+.-+.+|+.|+-.-+-|+..+...++++..-.|.++-.-++|..++. +|..
T Consensus 387 N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght 465 (625)
T KOG4422|consen 387 NWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHT 465 (625)
T ss_pred chhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhh
Confidence 11 2235556667777777888888888888777778888888888888888888888888888777 5655
Q ss_pred CChHHHHHHHHHHhhcC-CH--------HH-----HHHHHH-------hC-CCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 007871 442 PKLEHYSCLVDLLSRAG-EL--------EQ-----ALNIVE-------SM-PMKPNLALWGTLLLACRNHQNVTLAEVVV 499 (586)
Q Consensus 442 ~~~~~~~~l~~~~~~~g-~~--------~~-----A~~~~~-------~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 499 (586)
.+......+...+++.. +. .. |..+++ ++ ..+-.....+..+..+.+.|..++|-+++
T Consensus 466 ~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l 545 (625)
T KOG4422|consen 466 FRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEML 545 (625)
T ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHH
Confidence 55555555555555444 11 11 111111 11 12345566677777788999999999999
Q ss_pred HHHHhcC---CCCcch--HHHHHHHHHhcCCchHHHHHHHHHHhCCCccC
Q 007871 500 EGLVELK---ADDCGL--YVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544 (586)
Q Consensus 500 ~~~~~~~---p~~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 544 (586)
.-..+.+ |..|.. ...+.+.-.+.+...+|...++-|...+...-
T Consensus 546 ~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~ 595 (625)
T KOG4422|consen 546 GLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPIC 595 (625)
T ss_pred HHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhh
Confidence 9886543 444432 33456666778888999999999977766543
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=1.9e-16 Score=148.12 Aligned_cols=258 Identities=16% Similarity=0.113 Sum_probs=113.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 007871 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV-MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355 (586)
Q Consensus 277 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 355 (586)
.+...+.+.|++++|++++++......+|+...| ..+...+...++.+.|...++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3456677888888888888665544323444444 44455566778888888888888777533 55567777776 688
Q ss_pred CCHHHHHHHHhccC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccCCHHHHHHHHH
Q 007871 356 GSLDEARRIFYSMT--KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKDDLIFLGVLIACSHSGLATEGYRIFQ 432 (586)
Q Consensus 356 g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (586)
+++++|.+++...- .++...+..++..+...++++++..+++++.... .+++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 89999998887664 3566677788888999999999999999987633 34566778888889999999999999999
Q ss_pred HhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP--MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
+..+ ..|.|......++..+...|+.+++.++++... .+.++..+..+..++...|+.++|..+++++.+.+|+|+
T Consensus 171 ~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 9988 345578889999999999999999888887662 234566788899999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 511 GLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 511 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
.+...++.++...|+.++|.+++++..+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887643
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=6e-13 Score=122.84 Aligned_cols=215 Identities=13% Similarity=0.118 Sum_probs=152.8
Q ss_pred hccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHH
Q 007871 318 AQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALK 394 (586)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 394 (586)
.-.|+.-.+..-|+..++....++. .|-.+..+|....+.++....|+...+ .++.+|..-.+.+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3345555566666665555433222 244455566666666666666665552 345566666666666777788888
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 007871 395 CFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PM 472 (586)
Q Consensus 395 ~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 472 (586)
=|++.+. +.|+. ..|..+.-+..+.+.++++...|++.++ .+|.-++.|+....++..+++++.|.+.|+.. ..
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 8887777 45544 5666676677778888888888888888 57777888888888888889999998888866 22
Q ss_pred CCC---------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 473 KPN---------LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 473 ~p~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
.|. +.+-..++ .+.-.+++..|+.+++++++++|....++..|+....++|+.++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222 11112222 233458999999999999999999999999999999999999999999998643
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=5.5e-12 Score=116.05 Aligned_cols=454 Identities=12% Similarity=0.072 Sum_probs=330.2
Q ss_pred ChhhHhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHH
Q 007871 43 EPFTLSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVL 119 (586)
Q Consensus 43 ~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll 119 (586)
+...+....+ .=... ++...|..+|++. ...+...|-..+..-.++.....|..++++....=+..|.. |-..+
T Consensus 72 ~~~~WikYaq-wEesq-~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQ-WEESQ-KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYI 148 (677)
T ss_pred HHHHHHHHHH-HHHhH-HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHH
Confidence 3444444444 23334 7899999999988 55677788888888899999999999999988753333333 33334
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC--CCChhhHHHHHHHHHhCCChhHH
Q 007871 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE--IKDLVSWNLVLRGFVECGEMGKA 197 (586)
Q Consensus 120 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 197 (586)
..--..|++..|.++|+...+ .+|+...|.+.|..-.+-..++.|..++++.. .|++.+|-...+.=.++|+...|
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHH
Confidence 444567999999999999887 67999999999999999999999999999854 68999999999999999999999
Q ss_pred HHHHhhCC--CCChhHHHHHHHHH---hhccCCHHHHHHHHHhCC----CC-ChhHHHHHHHHHHhcCCHHHHHHHHh--
Q 007871 198 REVFDEMP--QKDAISWSIMIDGY---RKKKGDISSARILFEHMP----IK-DLISWNSMIDGYAKIGDLVAAQQLFN-- 265 (586)
Q Consensus 198 ~~~~~~~~--~~~~~~~~~ll~~~---~~~~g~~~~a~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~-- 265 (586)
..+|+... -.|...-..++.++ -..+..++.|.-+|+-.. +. ....|..+...--+-|+.....+..-
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 99999887 22222222222222 145677888888876544 22 34566666666556666544443322
Q ss_pred -hC-----CC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---hccCChhHH
Q 007871 266 -EM-----PE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV-------ISVMGAISAC---AQVGALDLG 326 (586)
Q Consensus 266 -~~-----~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~-------~~~~~l~~~~---~~~~~~~~a 326 (586)
++ .. -|-.+|--.+..--..|+.+...++|+.++.. ++|-. ..|..+=-+| ....+++.+
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 22 22 25567777777778889999999999999975 56633 1222222222 356789999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHH----HHHHhcCCHHHHHHHHhccC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007871 327 KWIHVFMKRSRITMDMIVQTALI----DMYMKCGSLDEARRIFYSMT--KKNVISYNVMIAGLGMNGFGEEALKCFAQME 400 (586)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 400 (586)
.++|+..++. ++....++..+= ..-.++.++..|.+++.... -|-..+|...|..-.+.+++|.+..+|++.+
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999884 455555555443 34457889999999998876 3778888888999899999999999999999
Q ss_pred HCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH
Q 007871 401 TEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPNLAL 478 (586)
Q Consensus 401 ~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 478 (586)
+ ..| +-.+|......-...|+.+.|..+|..+..+.........|.+.|+--...|.++.|..++++. ...+...+
T Consensus 465 e--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kv 542 (677)
T KOG1915|consen 465 E--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKV 542 (677)
T ss_pred h--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchH
Confidence 9 455 4467777777677889999999999999885333334556777777778999999999999987 33456667
Q ss_pred HHHHHHHHH-----hcC-----------ChHHHHHHHHHHHhc
Q 007871 479 WGTLLLACR-----NHQ-----------NVTLAEVVVEGLVEL 505 (586)
Q Consensus 479 ~~~l~~~~~-----~~~-----------~~~~a~~~~~~~~~~ 505 (586)
|-.+...-. ..+ +...|..+|+++...
T Consensus 543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 766655433 233 567888889888764
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.6e-12 Score=119.30 Aligned_cols=314 Identities=12% Similarity=0.054 Sum_probs=231.9
Q ss_pred hccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh-hHHHHHHHHHHhCCCchHHHHHHHHHH
Q 007871 221 KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV-FSWSIMIDGYAQHGNPKEALYLFREML 299 (586)
Q Consensus 221 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~ 299 (586)
.+.|..+.|+..|......-+..|.+.+...--..+.+.+..+...+...+. ..--.+..++......++++.-.....
T Consensus 175 k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~ 254 (559)
T KOG1155|consen 175 KELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLS 254 (559)
T ss_pred HhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777666654445555544444334444444444333332221 111234455666667788888888888
Q ss_pred HCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHH
Q 007871 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI--TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYN 377 (586)
Q Consensus 300 ~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 377 (586)
..|++-+...-+....+.....++++|+.+|+++.+..+ -.|..+|+.++-+-....++.---...-.+.+-.+.|..
T Consensus 255 ~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCC 334 (559)
T KOG1155|consen 255 SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCC 334 (559)
T ss_pred hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCcccee
Confidence 888766666666666667788899999999999988742 124567776654333222222222222233344556777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh
Q 007871 378 VMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456 (586)
Q Consensus 378 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 456 (586)
.+.+-|.-.++.++|...|++..+ +.|.. ..|+.+..-|....+...|.+.++.+.+ -.|.|-..|-.|+.+|.-
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEI 410 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHH
Confidence 777888889999999999999998 56655 5778888889999999999999999988 456688999999999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 007871 457 AGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534 (586)
Q Consensus 457 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 534 (586)
.+...-|+-+|++. ..+| |+..|.+|..+|.+.++.++|++.|.++...+..+..++..|+.+|.+.++.++|...|+
T Consensus 411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~ye 490 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYE 490 (559)
T ss_pred hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999988 4555 889999999999999999999999999999988888999999999999999999999998
Q ss_pred HHHh
Q 007871 535 MMRK 538 (586)
Q Consensus 535 ~m~~ 538 (586)
+..+
T Consensus 491 k~v~ 494 (559)
T KOG1155|consen 491 KYVE 494 (559)
T ss_pred HHHH
Confidence 8765
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=5e-12 Score=116.32 Aligned_cols=454 Identities=12% Similarity=0.060 Sum_probs=339.5
Q ss_pred CCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCch-hHHHHH
Q 007871 75 PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV-FVVNGL 153 (586)
Q Consensus 75 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l 153 (586)
.+...|-....--..++++..|..+|++.+.-.. -+...|..-+..-.+...+..|..+++..+..= |.+ ..|-..
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY 147 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHH
Confidence 3455566666666678889999999999987643 356667777777788889999999999988743 332 345556
Q ss_pred HHHHHhcCChhHHHHHhccCC--CCChhhHHHHHHHHHhCCChhHHHHHHhhCC--CCChhHHHHHHHHHhhccCCHHHH
Q 007871 154 IGMYSKCGHMGCARSVFEGSE--IKDLVSWNLVLRGFVECGEMGKAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSA 229 (586)
Q Consensus 154 i~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~g~~~~a 229 (586)
+.+--..|++..|.++|++.. +|+..+|++.|..=.+.+.++.|..+|++.. .|+..+|.-....- .+.|++..+
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE-~k~g~~~~a 226 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFE-EKHGNVALA 226 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHH-HhcCcHHHH
Confidence 666677899999999999865 6899999999999999999999999999988 89999998887777 889999999
Q ss_pred HHHHHhCCCC------ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C---ChhHHHHHHHHHHhCCCchHHHHH----
Q 007871 230 RILFEHMPIK------DLISWNSMIDGYAKIGDLVAAQQLFNEMPE--R---NVFSWSIMIDGYAQHGNPKEALYL---- 294 (586)
Q Consensus 230 ~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~A~~~---- 294 (586)
..+|+..... +...+.+....-.++..++.|.-+|+-..+ | ....|..+...--+-|+.....+.
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 9999877632 334566666666677888888888876554 2 244555555555566765544443
Q ss_pred ----HHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCch--hHHHHHHHH--------HHhcCCHHH
Q 007871 295 ----FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM--IVQTALIDM--------YMKCGSLDE 360 (586)
Q Consensus 295 ----~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~g~~~~ 360 (586)
++++++.+ +-|-.+|--.+..-...|+.+...++|+.++..- +|-. ..+...+-. -....+.+.
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34445443 5677788888888888899999999999998763 4321 122222211 134678888
Q ss_pred HHHHHhccCC---CCHh----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 007871 361 ARRIFYSMTK---KNVI----SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433 (586)
Q Consensus 361 a~~~~~~~~~---~~~~----~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (586)
+.++++...+ .... .|-.....-.++.+...|.+++...+ |.-|...+|...|..-.+.+++|....++++
T Consensus 385 tr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 385 TRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8888876653 2223 34444555668899999999998766 4789999999999998999999999999999
Q ss_pred hHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007871 434 MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL----ALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509 (586)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 509 (586)
... -.|-+..+|...+..-...|+.+.|..+|+-+-.+|.. ..|...+..-...|.+++|..+|+++++..+..
T Consensus 463 fle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~ 540 (677)
T KOG1915|consen 463 FLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV 540 (677)
T ss_pred HHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc
Confidence 988 34557889999999889999999999999988656643 445566666678899999999999999987655
Q ss_pred cchHHHHHHHHH-----hcC-----------CchHHHHHHHHHHhC
Q 007871 510 CGLYVLLSNIYA-----DAG-----------MWEHALRIRKMMRKR 539 (586)
Q Consensus 510 ~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~~~ 539 (586)
. .|...+..-. +.| ....|+.+|++....
T Consensus 541 k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 541 K-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred h-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 5 7777665544 344 566788888877543
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=2.4e-12 Score=127.79 Aligned_cols=312 Identities=15% Similarity=0.198 Sum_probs=174.4
Q ss_pred CCHHHHHHHHHhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhC---CCCChhHHHHHHHHHHhCCCchHHHHHHHH
Q 007871 224 GDISSARILFEHMPI---KDLISWNSMIDGYAKIGDLVAAQQLFNEM---PERNVFSWSIMIDGYAQHGNPKEALYLFRE 297 (586)
Q Consensus 224 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 297 (586)
|++++|.+++.++.. .....|..|...|-..|+.+++...+-.. ...|...|..+.....+.|+++.|.-+|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 444444444443331 13333444444444444444444333222 122334444444444444444444444444
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHH----HHHHHHHHhcCCHHHHHHHHhccCC---
Q 007871 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ----TALIDMYMKCGSLDEARRIFYSMTK--- 370 (586)
Q Consensus 298 m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~--- 370 (586)
.++.. +++...+---...|-+.|+...|..-|.++.....+.+..-+ ...++.+...++.+.|.+.++....
T Consensus 233 AI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 233 AIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 44432 223333333333344444444444444444443321111111 1123333344444444444443332
Q ss_pred --CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC---------------------------CCCCCHHHHHHHHHHhhcc
Q 007871 371 --KNVISYNVMIAGLGMNGFGEEALKCFAQMETE---------------------------GIPKDDLIFLGVLIACSHS 421 (586)
Q Consensus 371 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---------------------------g~~p~~~~~~~l~~~~~~~ 421 (586)
-+...++.++..|.+...++.|......+... ++.++... ..+.-++.+.
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L 390 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHL 390 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcc
Confidence 12234445555555555555555554444431 12222222 1233334444
Q ss_pred CCHHHHHHHHHHhHHhhCC--CCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChHHHH
Q 007871 422 GLATEGYRIFQSMKRHCGI--EPKLEHYSCLVDLLSRAGELEQALNIVESMPMK---PNLALWGTLLLACRNHQNVTLAE 496 (586)
Q Consensus 422 g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~ 496 (586)
...+....+......+ .. ..+...|.-+.++|...|++.+|+.++..+... .+...|..+..+|...|.++.|.
T Consensus 391 ~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 4444444444444442 43 346788999999999999999999999998433 25678999999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 497 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
+.|++++...|.+..+...|+.++.+.|+.++|.+.+..+..
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999873
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=4.7e-12 Score=123.98 Aligned_cols=214 Identities=11% Similarity=0.030 Sum_probs=103.3
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHh--------HHHHHHHHHH
Q 007871 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK---NVI--------SYNVMIAGLG 384 (586)
Q Consensus 316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~--------~~~~l~~~~~ 384 (586)
.+...|+++.|...++.+.+.. +.++.....+...|.+.|++++|.+++..+.+. +.. .|..++....
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443 223334444444444444444444444444321 011 1222222222
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHH
Q 007871 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL 464 (586)
Q Consensus 385 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 464 (586)
...+.+...++|+.+... .+.++.....+..++...|+.++|.+++++..+. +++.... ++.+....++.+++.
T Consensus 241 ~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al 314 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLE 314 (398)
T ss_pred HhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHH
Confidence 333344444444444322 2334455555566666666666666666555441 3333221 122223346666666
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 465 NIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 465 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
+.+++. +..| |+.....+...|...+++++|.+.|+++.+..|++.. +..++.++.+.|+.++|.++|++-.
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666555 2233 3444555555566666666666666666666655442 4456666666666666666666543
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=3.5e-13 Score=129.43 Aligned_cols=275 Identities=14% Similarity=0.017 Sum_probs=188.1
Q ss_pred CCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHhCCCchHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChhHHHHH
Q 007871 255 GDLVAAQQLFNEMPE--RN-VFSWSIMIDGYAQHGNPKEALYLFREMLCQG--VRPDVISVMGAISACAQVGALDLGKWI 329 (586)
Q Consensus 255 g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 329 (586)
-+..+|...|..+.+ +| ..+...+..+|...+++++|.++|+.+.+.. ..-+...|.+.+-.+-+. -+..+
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 346677777777543 23 3444556777888888888888888877642 112455666665443321 12222
Q ss_pred H-HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 007871 330 H-VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK---NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405 (586)
Q Consensus 330 ~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 405 (586)
+ +.+.+.. +..+.+|.++..+|.-+++.+.|++.|++...- ...+|+.+..-+.....+|.|+..|+..+. +.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 2 2333332 456677888888888888888888888877642 446777777777777888888888887665 45
Q ss_pred CCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 007871 406 KDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTL 482 (586)
Q Consensus 406 p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 482 (586)
|.. ..|..+...|.++++++.|+-.|+++.. --|.+......++..+.+.|+.|+|+.+++++ ...| |+..-...
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 544 4677777788888888888888888766 23446666777777888888888888888877 3333 55555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 483 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
+..+...+++++|+..++++.+.-|++..++..++.+|.+.|+.+.|..-+--+.+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 66677778888888888888888888888888888888888888888776665544
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=3.4e-13 Score=129.56 Aligned_cols=279 Identities=12% Similarity=0.047 Sum_probs=201.4
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHHHHHH
Q 007871 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI--TMDMIVQTALIDMYMKCGSLDEARRI 364 (586)
Q Consensus 287 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~ 364 (586)
+..+|+..|.+... .+.-+......+..+|...++.++++.+|+.+.+... .-+..+|.+.+--+-+.=.+.---+-
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 46788888888443 3455556777788889999999999999988876632 23556777666433221111111112
Q ss_pred HhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC
Q 007871 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443 (586)
Q Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 443 (586)
+-.+.+..+.+|-++...|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+.... -.+-+
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rh 488 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRH 488 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchh
Confidence 2222345678899999999999999999999999888 677 457888888888888899999999988766 12223
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 007871 444 LEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521 (586)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 521 (586)
-..|-.++-.|.++++++.|+-.|+++ .+.| +......++..+.+.|+.++|+.+++++..++|.|+-..+..+.++.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 344555778889999999999999887 5666 55666667777888999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCCCccCCCeeEEEEC----------CeEeEEecCCCCCCChhHH
Q 007871 522 DAGMWEHALRIRKMMRKRKIKKETGRSVIEID----------GNIKEFVSGEIFDVQSEEL 572 (586)
Q Consensus 522 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 572 (586)
..+++++|...++++++.- |+.....++++ -+...|.....++|....+
T Consensus 569 ~~~~~~eal~~LEeLk~~v--P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i 627 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKELV--PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQI 627 (638)
T ss_pred hhcchHHHHHHHHHHHHhC--cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchh
Confidence 9999999999999987743 33333333221 2455566666778887773
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=3.2e-12 Score=125.09 Aligned_cols=278 Identities=14% Similarity=0.040 Sum_probs=221.4
Q ss_pred ccCCHHHHHHHHHhCCCC--ChhH-HHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHH--HHHHHHHhCCCchHHHHH
Q 007871 222 KKGDISSARILFEHMPIK--DLIS-WNSMIDGYAKIGDLVAAQQLFNEMPE--RNVFSWS--IMIDGYAQHGNPKEALYL 294 (586)
Q Consensus 222 ~~g~~~~a~~~~~~~~~~--~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~l~~~~~~~~~~~~A~~~ 294 (586)
..|+++.|.+.+...... ++.. +........+.|+++.|.+.+.++.+ |+..... .....+...|+++.|...
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 469999999998876543 2333 33334555899999999999999876 4433222 336688899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchh-------HHHHHHHHHHhcCCHHHHHHHHhc
Q 007871 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI-------VQTALIDMYMKCGSLDEARRIFYS 367 (586)
Q Consensus 295 ~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~ 367 (586)
++++.+.. +-+......+...+.+.|+++.+..++..+.+.+..++.. .|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 99999875 5567788889999999999999999999999887654332 233334444455567778888888
Q ss_pred cCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCCh
Q 007871 368 MTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444 (586)
Q Consensus 368 ~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 444 (586)
+.+ .++.....+...+...|+.++|..++++..+ ..|++... ++.+....++.+++.+..+...+ ..+.|+
T Consensus 255 lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~ 328 (398)
T PRK10747 255 QSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTP 328 (398)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCH
Confidence 763 5788899999999999999999999999988 45665322 23334456999999999999988 567788
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007871 445 EHYSCLVDLLSRAGELEQALNIVESM-PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506 (586)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 506 (586)
..+..++..+.+.|++++|.+.|+.. ...|+...+..+...+...|+.++|..++++...+-
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 88999999999999999999999988 567999999999999999999999999999987753
No 44
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.56 E-value=1e-09 Score=105.17 Aligned_cols=502 Identities=12% Similarity=0.112 Sum_probs=307.1
Q ss_pred HHHHHHHccCchHHHHHHHHHHH-cCCCCChhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCCc
Q 007871 15 LVSLLQISKTTTHILQILAQLTT-NDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNP 93 (586)
Q Consensus 15 l~~~l~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 93 (586)
+..++...|.+...+..|+.... .-+.....+|...+. ..... |-++.+.+++++..+-++..-+-.+..++..+++
T Consensus 108 Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~-Fv~~~-~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~ 185 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLK-FVESH-GLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRL 185 (835)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHH-HHHhC-CChHHHHHHHHHHHhcCHHHHHHHHHHHHhccch
Confidence 34455566666666777766433 344455566777777 66666 7788888888877555556677778888888888
Q ss_pred hhHHHHHHHhHhCC------CCCCcccHHHHHHHHhccCCchH---HHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCC
Q 007871 94 QKALSFYVNMKRKG------LLVDNYTYPFVLKACGVLMGLVE---GTEIHGEVVKMGFLCDV--FVVNGLIGMYSKCGH 162 (586)
Q Consensus 94 ~~A~~~~~~m~~~~------~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~ 162 (586)
++|.+.+....... -+-+...|..+-...++..+.-. ...+++.+... -+|. ..|.+|.+-|.+.|+
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~ 263 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGL 263 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhh
Confidence 88888888775432 12244455555555544433322 22333333221 2343 478899999999999
Q ss_pred hhHHHHHhccCCCC--ChhhHHHHHHHHHhC----------------CC------hhHHHHHHhhCC-------------
Q 007871 163 MGCARSVFEGSEIK--DLVSWNLVLRGFVEC----------------GE------MGKAREVFDEMP------------- 205 (586)
Q Consensus 163 ~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~----------------g~------~~~A~~~~~~~~------------- 205 (586)
+++|..+|++.... .+.-|+.+...|++. |+ ++-.+.-|+.+.
T Consensus 264 ~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLR 343 (835)
T KOG2047|consen 264 FEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLR 343 (835)
T ss_pred hHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHh
Confidence 99999999876543 222233333333221 11 222233333332
Q ss_pred --CCChhHHHHHHHHHhhccCCHHHHHHHHHhCCC---C------ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---
Q 007871 206 --QKDAISWSIMIDGYRKKKGDISSARILFEHMPI---K------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERN--- 271 (586)
Q Consensus 206 --~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~---~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 271 (586)
..+..+|..-+. ...|+..+-...+.+... | -...|..+...|-..|+++.|..+|++..+-+
T Consensus 344 Qn~~nV~eW~kRV~---l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 344 QNPHNVEEWHKRVK---LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred cCCccHHHHHhhhh---hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 112333333333 235555555555544431 1 23458899999999999999999999998732
Q ss_pred ----hhHHHHHHHHHHhCCCchHHHHHHHHHHHC-----------CCCCCH------HHHHHHHHHHhccCChhHHHHHH
Q 007871 272 ----VFSWSIMIDGYAQHGNPKEALYLFREMLCQ-----------GVRPDV------ISVMGAISACAQVGALDLGKWIH 330 (586)
Q Consensus 272 ----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----------g~~~~~------~~~~~l~~~~~~~~~~~~a~~~~ 330 (586)
..+|......-.+..+++.|+++++..... +.++.. ..|...+..--..|-++....+|
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 245656666667788899999988877532 111111 23444444455667888889999
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC----CCH-hHHHHHHHHHHh---cCChHHHHHHHHHHHHC
Q 007871 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK----KNV-ISYNVMIAGLGM---NGFGEEALKCFAQMETE 402 (586)
Q Consensus 331 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~ 402 (586)
+.+.+..+-... +.......+-...-++++.+++++-.. |++ ..|+..+.-+.+ ....+.|..+|++..+
T Consensus 501 driidLriaTPq-ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~- 578 (835)
T KOG2047|consen 501 DRIIDLRIATPQ-IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD- 578 (835)
T ss_pred HHHHHHhcCCHH-HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-
Confidence 999888765333 333333344455668899999987663 554 367776665543 2468999999999999
Q ss_pred CCCCCHH-HHHHHHHH-hhccCCHHHHHHHHHHhHHhhCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH
Q 007871 403 GIPKDDL-IFLGVLIA-CSHSGLATEGYRIFQSMKRHCGIEPK--LEHYSCLVDLLSRAGELEQALNIVESM-PMKPNLA 477 (586)
Q Consensus 403 g~~p~~~-~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 477 (586)
|++|... |...+-.- =-+.|-...|..+++++.. ++++. ...|+..|.-....=-.....++|++. ..-|+..
T Consensus 579 ~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~ 656 (835)
T KOG2047|consen 579 GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSK 656 (835)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHH
Confidence 6777653 32222222 2346888999999999877 56554 356776665333222222333344433 1224444
Q ss_pred HHHHHH---HHHHhcCChHHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCCch
Q 007871 478 LWGTLL---LACRNHQNVTLAEVVVEGLVELKAD--DCGLYVLLSNIYADAGMWE 527 (586)
Q Consensus 478 ~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 527 (586)
.-...+ ..-.+.|..+.|..+|....+.-++ +...|...-..-.+.|+-+
T Consensus 657 ~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 657 AREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 433333 3356789999999999998887643 5667888877788888833
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=2.1e-11 Score=120.13 Aligned_cols=275 Identities=13% Similarity=0.019 Sum_probs=125.8
Q ss_pred cCCHHHHHHHHHhCCC--CC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh--hHHHHHHHHHHhCCCchHHHHHH
Q 007871 223 KGDISSARILFEHMPI--KD-LISWNSMIDGYAKIGDLVAAQQLFNEMPE--RNV--FSWSIMIDGYAQHGNPKEALYLF 295 (586)
Q Consensus 223 ~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~A~~~~ 295 (586)
.|+++.|.+.+....+ |+ ...+-....++...|+.+.|.+.+.+..+ |+. ...-.....+...|+++.|...+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4555555555544332 11 12223333445555666666666655432 222 12222345555666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH---H----hcCCHHHHHHHHhcc
Q 007871 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY---M----KCGSLDEARRIFYSM 368 (586)
Q Consensus 296 ~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~g~~~~a~~~~~~~ 368 (586)
+.+.+.. +-+...+..+...+...|+++.+...+..+.+.++.++......-..++ . .....+...+.++..
T Consensus 177 ~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~ 255 (409)
T TIGR00540 177 DKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ 255 (409)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence 6666553 3344455556666666666666666666666655332222111111111 1 111223333334333
Q ss_pred CC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHhhccCCHHHHHHHHHHhHHhhCCCC
Q 007871 369 TK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI--F-LGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442 (586)
Q Consensus 369 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~--~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 442 (586)
++ .++..+..++..+...|+.++|.+++++..+. .|+... + ..........++.+.+.+.++...+ ..+.
T Consensus 256 p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~ 331 (409)
T TIGR00540 256 PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDD 331 (409)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCC
Confidence 32 25555555556666666666666666665552 233221 0 1111111223444455555544444 2222
Q ss_pred Ch--HHHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007871 443 KL--EHYSCLVDLLSRAGELEQALNIVES--M-PMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502 (586)
Q Consensus 443 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 502 (586)
|+ ....+++..+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 3344445555555555555555552 1 23444444444444455555555555555444
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=7.7e-11 Score=108.49 Aligned_cols=352 Identities=14% Similarity=0.056 Sum_probs=240.4
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHhhCCC---CChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCCh-hHHHHHHHH
Q 007871 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ---KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL-ISWNSMIDG 250 (586)
Q Consensus 175 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~l~~~ 250 (586)
+.|...+......+.+.|..+.|...|..... .....|..+...+ .+.+.+..+...+...+. ..--.+..+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~li----t~~e~~~~l~~~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELI----TDIEILSILVVGLPSDMHWMKKFFLKKA 236 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhh----chHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 34555566666667778888888888877763 2333343333333 344444333333322211 111223344
Q ss_pred HHhcCCHHHHHHHHhhCCC---CC-hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCChh
Q 007871 251 YAKIGDLVAAQQLFNEMPE---RN-VFSWSIMIDGYAQHGNPKEALYLFREMLCQGV--RPDVISVMGAISACAQVGALD 324 (586)
Q Consensus 251 ~~~~g~~~~A~~~~~~~~~---~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~--~~~~~~~~~l~~~~~~~~~~~ 324 (586)
+-...+.+++..-.+.... |+ ...-+....+.-...|+++|+.+|++..++.. -.|..+|..++-.-.....+.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 4455566666555554443 22 22223333445567889999999999998731 125667776664433322221
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007871 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMET 401 (586)
Q Consensus 325 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 401 (586)
++..-.-.--+.-+.|...+.+.|.-.++.++|...|+...+ .....|+.+..-|....+...|++.+++.++
T Consensus 317 ----~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 317 ----YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred ----HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 111111111123445677788888889999999999998875 3456788889999999999999999999998
Q ss_pred CCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHH
Q 007871 402 EGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP--MKPNLAL 478 (586)
Q Consensus 402 ~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~ 478 (586)
+.| |-..|..|.++|.-.+.+.=|+-.|++... --|.|...|.+|+++|.+.++.++|++.|.+.- .+.+...
T Consensus 393 --i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 393 --INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred --cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 455 557999999999999999999999999977 345588999999999999999999999999872 2335678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVEL-------KADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
+..+...+.+.++.++|...|++.++. +|....+..-|+.-+.+.+++++|..+......
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 889999999999999999999998872 344455555578888999999999887766544
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.4e-10 Score=107.00 Aligned_cols=262 Identities=15% Similarity=0.015 Sum_probs=185.2
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007871 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351 (586)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (586)
+........-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=..+++.- |..+.+|-++.-.
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHH
Confidence 3344444555667788888888888877653 5566666666667777777766666666666653 5566677777777
Q ss_pred HHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHH
Q 007871 352 YMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428 (586)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 428 (586)
|...|++++|++.|.+... .-...|-.+..+|+-.|..|.|+..+...-+. ++-...-+.-+..-|.+.++.+.|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHH
Confidence 7777888888888877653 23467888888888888888888887776652 1111222333444577778888888
Q ss_pred HHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 007871 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP--------MKP-NLALWGTLLLACRNHQNVTLAEVVV 499 (586)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 499 (586)
++|..... -.|.|+...+.++-.....+.+.+|..+|+... .++ -.++++.|..+|.+.+.+++|+..+
T Consensus 401 ~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 401 KFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 88888766 445567777777777777788888888876551 111 2355777778888888888888888
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 500 EGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 500 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
++++.+.|.++.++..++.+|...|+++.|.+.|.+...
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 888888888888888888888888888888888777644
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=3.2e-11 Score=118.85 Aligned_cols=282 Identities=11% Similarity=0.040 Sum_probs=204.9
Q ss_pred HHhcCCHHHHHHHHhhCCC--CCh-hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChhH
Q 007871 251 YAKIGDLVAAQQLFNEMPE--RNV-FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV--ISVMGAISACAQVGALDL 325 (586)
Q Consensus 251 ~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~--~~~~~l~~~~~~~~~~~~ 325 (586)
....|+++.|.+.+.+..+ |+. ..+-....+..+.|+++.|...+.+..+. .|+. .........+...|+++.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 3568999999999988765 433 33444567788889999999999998875 3444 233445777888999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHH----HHHHHHhcCChHHHHHHHHH
Q 007871 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNV----MIAGLGMNGFGEEALKCFAQ 398 (586)
Q Consensus 326 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~----l~~~~~~~~~~~~A~~~~~~ 398 (586)
|...++.+.+.. +.++.+...+..++...|++++|.+.+..+.+ .+...+.. ........+..++..+.+..
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999886 44667888999999999999999999988874 23333321 11222333333444445555
Q ss_pred HHHCC---CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHH--HHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 007871 399 METEG---IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH--YSCLVDLLSRAGELEQALNIVESM-PM 472 (586)
Q Consensus 399 m~~~g---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~-~~ 472 (586)
+.+.. .+.+...+..+...+...|+.++|.+++++..+. .+++... .....-.....++.+.+.+.+++. +.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 55431 1237788888999999999999999999999883 3333321 111122223457888888888776 34
Q ss_pred CC-CH--HHHHHHHHHHHhcCChHHHHHHHHH--HHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 473 KP-NL--ALWGTLLLACRNHQNVTLAEVVVEG--LVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 473 ~p-~~--~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
.| |+ ....++...|.+.|++++|.+.|++ +.+..|++.. +..++.++.+.|+.++|.+++++...
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45 34 5667889999999999999999994 6666666554 66999999999999999999998644
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.51 E-value=8.1e-14 Score=130.37 Aligned_cols=251 Identities=13% Similarity=0.107 Sum_probs=101.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhhC-CC----CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007871 246 SMIDGYAKIGDLVAAQQLFNEM-PE----RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320 (586)
Q Consensus 246 ~l~~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 320 (586)
.+...+.+.|++++|.+++++. .. .|...|..+.......++++.|...++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 3455666777777777777432 22 2445555566666677788888888888776542 244455555555 677
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC-----CCCHhHHHHHHHHHHhcCChHHHHHH
Q 007871 321 GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-----KKNVISYNVMIAGLGMNGFGEEALKC 395 (586)
Q Consensus 321 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~ 395 (586)
+++++|..++....+.. +++..+...+..+.+.++++++.++++.+. +++...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77888877776654432 345556667777888888888888877743 24667778888888889999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 007871 396 FAQMETEGIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMK 473 (586)
Q Consensus 396 ~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 473 (586)
+++..+ ..|+ ......++..+...|+.+++.+++....+. .+.|+..+..++.+|...|+.++|..++++. ...
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999888 4564 567778888888899999988888888773 3667778888899999999999999999887 333
Q ss_pred C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 474 P-NLALWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 474 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
| |+.....+..++...|+.++|..+.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 4 677777888888999999999988887764
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.51 E-value=5.1e-11 Score=117.95 Aligned_cols=441 Identities=14% Similarity=0.071 Sum_probs=229.7
Q ss_pred CCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHH
Q 007871 73 YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNG 152 (586)
Q Consensus 73 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 152 (586)
..||.++|..+|.-|+..|+.+.|- +|.-|.-+....+...|+.++.+....++.+.++ .|...+|..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 4555566666666666666666665 6665555555555555666666655555555443 455556666
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC-----CCChhHHHHHHHHHhhccCCHH
Q 007871 153 LIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP-----QKDAISWSIMIDGYRKKKGDIS 227 (586)
Q Consensus 153 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~~g~~~ 227 (586)
|..+|...||+.. .+..++ -...+...+...|.-..-..++..+. -||..+ .+... ...|-++
T Consensus 89 Ll~ayr~hGDli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illl-v~eglwa 156 (1088)
T KOG4318|consen 89 LLKAYRIHGDLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLL-VLEGLWA 156 (1088)
T ss_pred HHHHHHhccchHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHH-HHHHHHH
Confidence 6666666665543 111111 01111222222222222222222222 111111 11111 2345556
Q ss_pred HHHHHHHhCCCC---ChhHHHHHHHHHHhc-CCHHHHHHHHhhCCC-CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 007871 228 SARILFEHMPIK---DLISWNSMIDGYAKI-GDLVAAQQLFNEMPE-RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302 (586)
Q Consensus 228 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 302 (586)
.+.+++..++.. .+... +++-.... ..+++-........+ ++..+|.+++.+-..+|+.+.|..++.+|.+.|
T Consensus 157 qllkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 666665555411 11111 12222221 223344444444443 677777777777777777777777777777777
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH----------------------
Q 007871 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE---------------------- 360 (586)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---------------------- 360 (586)
++.+.+-|..++.+ .++...+..+++-|.+.|+.|+..|+...+..+...|....
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcc
Confidence 77777766666655 66666777777777777777777776655544444322111
Q ss_pred --HHHHHhcc---------CC-------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCH-HHHHHHHHHhh
Q 007871 361 --ARRIFYSM---------TK-------KNVISYNVMIAGLGMNGFGEEALKCFAQMETEG--IPKDD-LIFLGVLIACS 419 (586)
Q Consensus 361 --a~~~~~~~---------~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g--~~p~~-~~~~~l~~~~~ 419 (586)
|.+.++.- ++ .....|...+.. ..+|+-++++++-..|..-- ..++. ..|..++.-|.
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 11111110 00 111233333332 33688888888887775421 22221 23333332222
Q ss_pred cc----------------------CCHHHHHHHHHHhHHh----------------------------------------
Q 007871 420 HS----------------------GLATEGYRIFQSMKRH---------------------------------------- 437 (586)
Q Consensus 420 ~~----------------------g~~~~A~~~~~~~~~~---------------------------------------- 437 (586)
+. .+..+..++.......
T Consensus 391 rr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~ 470 (1088)
T KOG4318|consen 391 RRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLN 470 (1088)
T ss_pred HHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence 11 0111111111100000
Q ss_pred --------------hCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007871 438 --------------CGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP-----MKPNLALWGTLLLACRNHQNVTLAEVV 498 (586)
Q Consensus 438 --------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~ 498 (586)
+....-...|..|++.+....+.+.|..+.++.. ..-|...+..+...+.+.+....+..+
T Consensus 471 se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ti 550 (1088)
T KOG4318|consen 471 SEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTI 550 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHH
Confidence 0000111345556666666667777777777663 123445566777778888888889998
Q ss_pred HHHHHhcC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 007871 499 VEGLVELK---ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543 (586)
Q Consensus 499 ~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 543 (586)
++++.+.- |........+.......|+.+.-.++.+-+...|+.-
T Consensus 551 L~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 551 LYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 88888742 4445566677777788899888888998888888876
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=4.2e-10 Score=102.17 Aligned_cols=276 Identities=13% Similarity=0.021 Sum_probs=167.6
Q ss_pred cCCHHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----ChhHHHHHHHHHHhCCCchHHHHHH
Q 007871 223 KGDISSARILFEHMPIK---DLISWNSMIDGYAKIGDLVAAQQLFNEMPER----NVFSWSIMIDGYAQHGNPKEALYLF 295 (586)
Q Consensus 223 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~ 295 (586)
.|++..|.+...+..+. ....|..-..+.-..|+.+.+-..+.+..++ +....-.........|++..|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44455554444433211 2222333334444555555555555555432 2333444455555666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007871 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM-------IVQTALIDMYMKCGSLDEARRIFYSM 368 (586)
Q Consensus 296 ~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~ 368 (586)
.++.+.+ +-+.........+|.+.|++.....++..+.+.|.-.+. .++..+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 6666553 334445555566666666666666666666666544332 24555555555555555555666666
Q ss_pred C---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChH
Q 007871 369 T---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445 (586)
Q Consensus 369 ~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 445 (586)
+ +.++..-.+++.-+.+.|+.++|.++.++..+.+..|+. ...-.+.+.++...-.+..+...+ ..+.++.
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~--~h~~~p~ 329 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLK--QHPEDPL 329 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHH--hCCCChh
Confidence 5 346667777777788888888888888887776666651 122235566777777777777666 3444556
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007871 446 HYSCLVDLLSRAGELEQALNIVESM-PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505 (586)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 505 (586)
.+.+|+..|.+.+.|.+|.+.|+.. +..|+...|..+..++.+.|+..+|....++....
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7777778888888888888877755 56677777777777777888888877777776643
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=5.7e-10 Score=105.54 Aligned_cols=481 Identities=11% Similarity=0.013 Sum_probs=299.5
Q ss_pred CchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc--CCCCcchHHHHHHHHhcCCCchhHHHHHH
Q 007871 24 TTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI--YQPNTYMHNTMIRGYTQSSNPQKALSFYV 101 (586)
Q Consensus 24 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 101 (586)
++..|.-+-+.....+ -||.-...+.+ ++.-. |++..|..+...- .+.+..+.......+.+..+|++|+.++.
T Consensus 31 ~y~~a~f~adkV~~l~--~dp~d~~~~aq-~l~~~-~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 31 RYKTALFWADKVAGLT--NDPADIYWLAQ-VLYLG-RQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred hhhHHHHHHHHHHhcc--CChHHHHHHHH-HHHhh-hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554444444433 45555555666 56566 7788888877643 66777788888888888888999988887
Q ss_pred HhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhH
Q 007871 102 NMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181 (586)
Q Consensus 102 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 181 (586)
.... .-+...|-.-=. +..-..+.+. ++. +.......+-.-...|....+.++|...|.+..-.|+..+
T Consensus 107 ~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~ 175 (611)
T KOG1173|consen 107 RGHV---ETNPFSYYEKDA--ANTLELNSAG----EDL--MINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCF 175 (611)
T ss_pred ccch---hhcchhhcchhh--hceeccCccc----ccc--cccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhH
Confidence 3310 001111000000 0000001111 000 0001111111112334445556666666655544444433
Q ss_pred HHHHHHHHhC-CChhHHHHHHhhCC-----CCChhHHHHHHHHHhhccCCHHHHHHHH-HhC--CCCChhHHHHHHHHHH
Q 007871 182 NLVLRGFVEC-GEMGKAREVFDEMP-----QKDAISWSIMIDGYRKKKGDISSARILF-EHM--PIKDLISWNSMIDGYA 252 (586)
Q Consensus 182 ~~l~~~~~~~-g~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~~g~~~~a~~~~-~~~--~~~~~~~~~~l~~~~~ 252 (586)
..+...-... =-..+-..+++.+. ..+......+......+..+.+.-...= +.+ ...+........+-+.
T Consensus 176 Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y 255 (611)
T KOG1173|consen 176 EAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLY 255 (611)
T ss_pred HHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHH
Confidence 3322211110 00112222222211 1111112222221100100000000000 001 1235666667777888
Q ss_pred hcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHH
Q 007871 253 KIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329 (586)
Q Consensus 253 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 329 (586)
..+++.+..++++.+.+ ++...+..-|.++...|+..+-.-+=.++++. .|-...+|-.+..-|...|+.++|..+
T Consensus 256 ~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred HcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHH
Confidence 99999999999999886 34455666677888899988888888888876 466778999999999999999999999
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 007871 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--K-NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK 406 (586)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 406 (586)
|......+.. -...|-.+...|+-.|..++|+..+....+ | ....+--+.--|.+.++.+.|.+.|.+.... .+.
T Consensus 335 ~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~ 412 (611)
T KOG1173|consen 335 FSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APS 412 (611)
T ss_pred HHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCC
Confidence 9988766532 234677788899999999999998876553 1 1122223344577889999999999998873 344
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhh----C-CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHH
Q 007871 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHC----G-IEPKLEHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALW 479 (586)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~ 479 (586)
|+...+-+.-.....+.+.+|..+|+...... . ..-...+++.|+.+|.+.+++++|+..+++. . .+.+..++
T Consensus 413 Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~ 492 (611)
T KOG1173|consen 413 DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTH 492 (611)
T ss_pred cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHH
Confidence 66778888777788999999999999877310 0 1124567899999999999999999999987 2 34478888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007871 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522 (586)
Q Consensus 480 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 522 (586)
..+.-.|...|+++.|...|.+++.+.|++..+-..|..+...
T Consensus 493 asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 493 ASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 8999899999999999999999999999998777777655433
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=6.6e-11 Score=107.96 Aligned_cols=197 Identities=14% Similarity=0.055 Sum_probs=159.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007871 342 MIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418 (586)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 418 (586)
...+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45566777788888888888888876653 345677778888889999999999999888752 34556777788888
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 007871 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAE 496 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 496 (586)
...|++++|.+.++........+.....+..++.++...|++++|...+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999998873222334567778889999999999999999877 2333 4667788888899999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 497 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
..++++.+..|.++..+..++.++...|+.++|..+.+.+.+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999998888888889999999999999999998887653
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=3.5e-10 Score=102.64 Aligned_cols=283 Identities=14% Similarity=0.105 Sum_probs=206.7
Q ss_pred hcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHH
Q 007871 253 KIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329 (586)
Q Consensus 253 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 329 (586)
..|++..|++...+-.+ .....|..-..+--+.||.+.+-.++.+.-+.--.++.....+........|+.+.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 36899999998887654 234455555666778899999999999888763355566666777778888999999888
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-----------HhHHHHHHHHHHhcCChHHHHHHHHH
Q 007871 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN-----------VISYNVMIAGLGMNGFGEEALKCFAQ 398 (586)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~ 398 (586)
...+.+.+ +-++.+......+|.+.|++.....++..+.+.. ..+|+.+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 88888876 4456677888899999999999999998887531 23566666666666666666667776
Q ss_pred HHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCH
Q 007871 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PM-KPNL 476 (586)
Q Consensus 399 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~ 476 (586)
.... .+-++.....++.-+...|+.++|.++..+..++ +..|+. ..+ -...+-++.+.-++..++. +. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---CRL-IPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---HHH-HhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 6553 5666777777888888899999999999888884 555551 112 2234556655555555444 11 2244
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 007871 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543 (586)
Q Consensus 477 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 543 (586)
..+.++...|.+++.|.+|...|+.+++..| +...|..++.++.+.|+..+|.+..++....-.+|
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 7788888889999999999999998777655 45688899999999999999999988876444433
No 55
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=4e-09 Score=100.43 Aligned_cols=432 Identities=13% Similarity=0.089 Sum_probs=237.5
Q ss_pred HHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHH--HHHHHH--hcC
Q 007871 86 GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNG--LIGMYS--KCG 161 (586)
Q Consensus 86 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~--~~g 161 (586)
-+...|++++|.+...++...+ +-|...+..-+-++...+.+++|..+.+.- + -..+++. +=.+|| +.+
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~---~~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKN---G---ALLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---c---hhhhcchhhHHHHHHHHHcc
Confidence 3445566666666666666543 223334444444555556666665332211 1 0111111 223333 566
Q ss_pred ChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCC--
Q 007871 162 HMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-- 239 (586)
Q Consensus 162 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~-- 239 (586)
..++|...++.....+..+...-...+.+.|++++|+++|+.+...+...+...+.+-+...+..-.+. +.+.....
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e 172 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPE 172 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCc
Confidence 777777777644444544555566667777777777777777753333333322222111111111221 23333322
Q ss_pred -ChhHHHHHHHHHHhcCCHHHHHHHHhhCC--------CCC-----h-----hHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 007871 240 -DLISWNSMIDGYAKIGDLVAAQQLFNEMP--------ERN-----V-----FSWSIMIDGYAQHGNPKEALYLFREMLC 300 (586)
Q Consensus 240 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-----~-----~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 300 (586)
+-..+......+...|++.+|+++++... +.| + ..-..+.-++...|+..+|..++...++
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK 252 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 22223333445667788888888887762 111 1 1223345567788999999999999988
Q ss_pred CCCCCCHHHHHHHHH---HHhccCChhH--HHHHHHHHH-----------HcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007871 301 QGVRPDVISVMGAIS---ACAQVGALDL--GKWIHVFMK-----------RSRITMDMIVQTALIDMYMKCGSLDEARRI 364 (586)
Q Consensus 301 ~g~~~~~~~~~~l~~---~~~~~~~~~~--a~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 364 (586)
.. ++|........+ +.....++-. +...++... ...-.-....-+.++.+| .+..+.+.++
T Consensus 253 ~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~ 329 (652)
T KOG2376|consen 253 RN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVREL 329 (652)
T ss_pred hc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHH
Confidence 75 455533222222 2222222111 111111111 000000111112233333 4566777777
Q ss_pred HhccCCCC-HhHHHHHHHH-HH-hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCCHHHHHHHHH-------
Q 007871 365 FYSMTKKN-VISYNVMIAG-LG-MNGFGEEALKCFAQMETEGIPKDD--LIFLGVLIACSHSGLATEGYRIFQ------- 432 (586)
Q Consensus 365 ~~~~~~~~-~~~~~~l~~~-~~-~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~------- 432 (586)
-....... ...+.+++.. +. +...+.++.+++...-+. .|.. ......+......|+++.|.+++.
T Consensus 330 ~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 330 SASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred HHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 77776432 3344444433 22 223577888888777663 3433 445555666788999999999999
Q ss_pred -HhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007871 433 -SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM--------PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGL 502 (586)
Q Consensus 433 -~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 502 (586)
.+.+ .+ ..+.+...+...|.+.++.+.|..++++. ...+ -..++..+...-.++|+.++|..+++++
T Consensus 408 ss~~~-~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel 484 (652)
T KOG2376|consen 408 SSILE-AK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEEL 484 (652)
T ss_pred hhhhh-hc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHH
Confidence 4433 23 34456667888888888887777777655 1112 1233444444556779999999999999
Q ss_pred HhcCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 007871 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRK 534 (586)
Q Consensus 503 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 534 (586)
++.+|++..+...++-+|++. +.+.|..+-+
T Consensus 485 ~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 485 VKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 999999999999999888765 4556655543
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=4.5e-10 Score=104.21 Aligned_cols=408 Identities=13% Similarity=0.016 Sum_probs=260.1
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHhHhCCCCCC-cccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCch-hHHHHHHHHH
Q 007871 80 HNTMIRGYTQSSNPQKALSFYVNMKRKGLLVD-NYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV-FVVNGLIGMY 157 (586)
Q Consensus 80 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~ 157 (586)
+-...+-|.++|++++|+++|...++. .|| +..|.....+|...|+++.+.+-....++ +.|+- ..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHH
Confidence 445567788899999999999998886 567 66777788888888999988887777776 34553 3666677888
Q ss_pred HhcCChhHHHHHhc------cCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC---CCChhHHHHHHHHHhhccCCHHH
Q 007871 158 SKCGHMGCARSVFE------GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP---QKDAISWSIMIDGYRKKKGDISS 228 (586)
Q Consensus 158 ~~~g~~~~a~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~g~~~~ 228 (586)
-..|++++|+.=+. ...... ...++.-..+..-..++.+-+..=. -|......+.+..+ . .++..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s---~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF-~--~~~~~ 267 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNAS---IEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF-H--ADPKP 267 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccch---hHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc-c--ccccc
Confidence 88888888864321 111111 1111111111111223333333211 23333333333332 0 00000
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhc-CCHHHHHHHHhhCC-------CC---C------hhHHHHHHHHHHhCCCchHH
Q 007871 229 ARILFEHMPIKDLISWNSMIDGYAKI-GDLVAAQQLFNEMP-------ER---N------VFSWSIMIDGYAQHGNPKEA 291 (586)
Q Consensus 229 a~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~-------~~---~------~~~~~~l~~~~~~~~~~~~A 291 (586)
.......+.|...-..+=..+... ..+..|.+.+.+-. .. | ..+.......+.-.|+...|
T Consensus 268 --~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 268 --LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred --cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 000000001111111111111111 12333333332221 11 1 12222223334567899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-
Q 007871 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK- 370 (586)
Q Consensus 292 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 370 (586)
..-|+..+.....++. .|-.+..+|...++.++....|+...+.+ +.++.+|..-.+++.-.+++++|..-|++...
T Consensus 346 ~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 346 QEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred hhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999987533333 37777888999999999999999998887 44667788888888888999999999998875
Q ss_pred --CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC-----
Q 007871 371 --KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK----- 443 (586)
Q Consensus 371 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----- 443 (586)
.++..|-.+..+..+.+++++++..|++.+.. ++..+..|+.....+..+++++.|.+.|+..+. +.|+
T Consensus 424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~ 499 (606)
T KOG0547|consen 424 DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLII 499 (606)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hcccccccc
Confidence 35567777777778889999999999999885 666778999999999999999999999999877 2222
Q ss_pred ----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007871 444 ----LEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506 (586)
Q Consensus 444 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 506 (586)
+.+...++-.- -.+++..|.+++.+. ...| ....+..|...-.+.|+.++|+++|++...+.
T Consensus 500 v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred ccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 22222222222 348999999999987 4556 34567888888899999999999999988754
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=1.6e-10 Score=101.59 Aligned_cols=221 Identities=14% Similarity=0.101 Sum_probs=124.7
Q ss_pred CCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCC-c--hhHHHHHHHHHHhcCChhHHH
Q 007871 91 SNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC-D--VFVVNGLIGMYSKCGHMGCAR 167 (586)
Q Consensus 91 ~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~~~li~~~~~~g~~~~a~ 167 (586)
+++++|.++|-+|.+.. +-+..+..+|-+.+-+.|..+.|..+++.+.++.--+ + ....-.|..-|...|-++.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45566666666665531 1133334455555556666666666666665532111 1 112334566677777777777
Q ss_pred HHhccCCCC---ChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHH
Q 007871 168 SVFEGSEIK---DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244 (586)
Q Consensus 168 ~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 244 (586)
.+|..+.+. -..+...|+..|-...+|++|++.-+++.+-+..+++.-|..+ |
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqf------------------------y 183 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQF------------------------Y 183 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHH------------------------H
Confidence 777766552 2345666777777777777777777766654555555555544 4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007871 245 NSMIDGYAKIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321 (586)
Q Consensus 245 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 321 (586)
+.+...+....+++.|..++.+..+ ..+.+--.+.......|+++.|.+.++...+.+..--+.+...+..+|...|
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg 263 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLG 263 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence 4444445555556666666655543 2233444455556666666666666666666543333344455555556666
Q ss_pred ChhHHHHHHHHHHHc
Q 007871 322 ALDLGKWIHVFMKRS 336 (586)
Q Consensus 322 ~~~~a~~~~~~~~~~ 336 (586)
+.++....+..+.+.
T Consensus 264 ~~~~~~~fL~~~~~~ 278 (389)
T COG2956 264 KPAEGLNFLRRAMET 278 (389)
T ss_pred CHHHHHHHHHHHHHc
Confidence 666655555555544
No 58
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.40 E-value=1.5e-09 Score=106.58 Aligned_cols=390 Identities=12% Similarity=0.030 Sum_probs=261.5
Q ss_pred HhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhhHHHHHHHHHhCCChhHHHHHHhhCC--C--CCh-hH
Q 007871 140 KMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI---KDLVSWNLVLRGFVECGEMGKAREVFDEMP--Q--KDA-IS 211 (586)
Q Consensus 140 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~--~~~-~~ 211 (586)
...+.-|..+|..|.-+..++|++..+-+.|++... .....|+.+...|...|.-..|..+++.-. . |+. ..
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 334566888999999999999999999999987654 355679999999999999999999998877 2 433 33
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHhCCC--------CChhHHHHHHHHHHhcC-----------CHHHHHHHHhhCCC---
Q 007871 212 WSIMIDGYRKKKGDISSARILFEHMPI--------KDLISWNSMIDGYAKIG-----------DLVAAQQLFNEMPE--- 269 (586)
Q Consensus 212 ~~~ll~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~--- 269 (586)
+-..-..|..+.+.++++..+-.+... -.+..|..+.-+|...- ...++.+.+++..+
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 444444554566777777766444332 14455555555554321 23456667776643
Q ss_pred CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHc-CCCCchhHHHHH
Q 007871 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS-RITMDMIVQTAL 348 (586)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l 348 (586)
.|+.+...+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++..|+.+.+...+. |..... ...-
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l--~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL--MDGK 553 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh--chhh
Confidence 2333322333446677889999999999998866778888888888888999999999888765433 211000 0000
Q ss_pred HHHHHhcCCHHHHHHHHhccCC-------------------------------C-CHhHHHHHHHHHHh---cCChHHHH
Q 007871 349 IDMYMKCGSLDEARRIFYSMTK-------------------------------K-NVISYNVMIAGLGM---NGFGEEAL 393 (586)
Q Consensus 349 ~~~~~~~g~~~~a~~~~~~~~~-------------------------------~-~~~~~~~l~~~~~~---~~~~~~A~ 393 (586)
+..-...++.+++......+.. . .+.++..+...... .-..+..
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~- 632 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK- 632 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc-
Confidence 1111123444444333222210 0 11111111111110 0011111
Q ss_pred HHHHHHHHCCCCCCH--------HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 007871 394 KCFAQMETEGIPKDD--------LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465 (586)
Q Consensus 394 ~~~~~m~~~g~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 465 (586)
|...-+.|.+ ..|......+...+..++|...+.+..+ ..+.....|...+..+...|.+++|.+
T Consensus 633 -----Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 633 -----LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred -----cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 1111112221 2345566678889999999999998877 566678888888899999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH--HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 466 IVESM-PMKP-NLALWGTLLLACRNHQNVTLAEV--VVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 466 ~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.|... ...| ++.+...+...+...|+-.-|.. ++..+.+.+|.++.+|..++.++.+.|+.++|.+.|....+.
T Consensus 706 af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 706 AFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 98876 4556 67888899999999998888888 999999999999999999999999999999999999987654
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=1.5e-09 Score=95.68 Aligned_cols=214 Identities=14% Similarity=0.191 Sum_probs=98.6
Q ss_pred CCChhHHHHHHhhCCCCChhHHH---HHHHHHhhccCCHHHHHHHHHhCCCC-Ch------hHHHHHHHHHHhcCCHHHH
Q 007871 191 CGEMGKAREVFDEMPQKDAISWS---IMIDGYRKKKGDISSARILFEHMPIK-DL------ISWNSMIDGYAKIGDLVAA 260 (586)
Q Consensus 191 ~g~~~~A~~~~~~~~~~~~~~~~---~ll~~~~~~~g~~~~a~~~~~~~~~~-~~------~~~~~l~~~~~~~g~~~~A 260 (586)
..+.++|.++|-+|.+-|..|+. ++-+.+ .++|.+|.|+++.+.+... |. .+.-.|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLf-RsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLF-RSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHH-HhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 45677777777777644444332 233344 6666666666666555422 11 1223334444555555555
Q ss_pred HHHHhhCCCCC---hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 007871 261 QQLFNEMPERN---VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337 (586)
Q Consensus 261 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (586)
+.+|..+.+.+ ..+...|+..|.+..+|++|+++-+++.+.+-.+...-.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI--------------------------- 179 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI--------------------------- 179 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH---------------------------
Confidence 55555554421 223334444555555555555555544443322221110
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007871 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414 (586)
Q Consensus 338 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 414 (586)
...|.-+...+....+++.|..++.+..+ ..+..--.+...+...|+++.|.+.|+...+.+..--+.+...|
T Consensus 180 ----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 180 ----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred ----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 01222233333333444444444444432 12223333344455555555555555555553222222344455
Q ss_pred HHHhhccCCHHHHHHHHHHhHH
Q 007871 415 LIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
..+|...|+.++....+..+.+
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 5555555555555555555544
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.36 E-value=3.3e-10 Score=110.44 Aligned_cols=240 Identities=17% Similarity=0.123 Sum_probs=146.8
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHhccCChhHHHHHHHHHHHc-----CC-CC
Q 007871 274 SWSIMIDGYAQHGNPKEALYLFREMLCQ-----G-VRPDVIS-VMGAISACAQVGALDLGKWIHVFMKRS-----RI-TM 340 (586)
Q Consensus 274 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----g-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~ 340 (586)
+...+...|...|+++.|..+++..++. | ..|...+ .+.+...|...+++++|..+|+.+... |- .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3344666677777777777777666543 1 0111111 112333444555555555555444322 10 01
Q ss_pred -chhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCH-HHHHHHHHH
Q 007871 341 -DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP-KDD-LIFLGVLIA 417 (586)
Q Consensus 341 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~-~~~~~l~~~ 417 (586)
-..+++.|..+|.+.|++++|...+ +.|++++++ ..|.. |.. ..++.+...
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~------------------------e~Al~I~~~--~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYC------------------------ERALEIYEK--LLGASHPEVAAQLSELAAI 334 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHH------------------------HHHHHHHHH--hhccChHHHHHHHHHHHHH
Confidence 1123444444555555555555444 233333333 11222 222 246666677
Q ss_pred hhccCCHHHHHHHHHHhHHhhC--CCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCC-CHHHHHH
Q 007871 418 CSHSGLATEGYRIFQSMKRHCG--IEP----KLEHYSCLVDLLSRAGELEQALNIVESM---------PMKP-NLALWGT 481 (586)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~ 481 (586)
|...+++++|..+++...+... +.+ -..+++.|...|...|++++|.++++++ +..+ ....++.
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~ 414 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ 414 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH
Confidence 8888888888888887665322 222 2467889999999999999999999876 1122 2456777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc----CCCC---cchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVEL----KADD---CGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+...|.+.+.+.+|..+|.+...+ +|++ ...|..|+.+|.+.|++++|.++.+.....
T Consensus 415 la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 415 LAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 888899999999999999887763 4544 456888999999999999999999888643
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=9.6e-09 Score=91.65 Aligned_cols=432 Identities=12% Similarity=0.031 Sum_probs=251.4
Q ss_pred CChHHHHHHHhccCCC---CcchHHH-HHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHH
Q 007871 60 LNMDQAERLFNQIYQP---NTYMHNT-MIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135 (586)
Q Consensus 60 ~~~~~A~~~~~~~~~~---~~~~~~~-ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 135 (586)
.|+..|+.+++.-... .....+. +...+.+.|++++|+..+..+.+. -.++...+..|.-+..-.|.+.+|..+.
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 5788888887654211 1112222 345567889999999999988774 3566666666666666677888887765
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC--CCChhHHH
Q 007871 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP--QKDAISWS 213 (586)
Q Consensus 136 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 213 (586)
... +.++..-..|+....+.|+-++-...-+.+.+.. .---++.+.....-.+.+|+++|.+.. .|+-...+
T Consensus 115 ~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alN 188 (557)
T KOG3785|consen 115 EKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALN 188 (557)
T ss_pred hhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhH
Confidence 432 2233344455566667777666665555544322 223344555555567889999999888 56667777
Q ss_pred HHHHHHhhccCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhC-----
Q 007871 214 IMIDGYRKKKGDISSARILFEHMP---IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH----- 285 (586)
Q Consensus 214 ~ll~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~----- 285 (586)
.-+..|..+.+-++-+.++++... +.+..+.|....-..+.-.-..|.+-...+.+.-...|- .+.-.++.
T Consensus 189 Vy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-f~~~l~rHNLVvF 267 (557)
T KOG3785|consen 189 VYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-FIEYLCRHNLVVF 267 (557)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-hHHHHHHcCeEEE
Confidence 777777678888888877766544 334444554444433322211222211221110000011 11112221
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-------CH
Q 007871 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG-------SL 358 (586)
Q Consensus 286 ~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~ 358 (586)
.+-+.|++++-.+.+. .|.. -..++--|.+.+++.+|..+.+++. +.++.-|-.-.-.++..| .+
T Consensus 268 rngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHl 339 (557)
T KOG3785|consen 268 RNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHL 339 (557)
T ss_pred eCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHH
Confidence 2345666666665543 3332 2234455677777777777665432 112222211111222222 34
Q ss_pred HHHHHHHhccCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 007871 359 DEARRIFYSMTK-----KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433 (586)
Q Consensus 359 ~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (586)
.-|...|+-+.. ..+.--.++...+.-..++++++..+.....- +..|...-..+..+++..|++.+|+++|-+
T Consensus 340 KiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~ 418 (557)
T KOG3785|consen 340 KIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIR 418 (557)
T ss_pred HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhh
Confidence 456666665442 23334455666666667788888888877764 333444444577788888899999988887
Q ss_pred hHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHhcCCCC
Q 007871 434 MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL-LACRNHQNVTLAEVVVEGLVELKADD 509 (586)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~ 509 (586)
+.. ..++.+..-...|.++|.+.++++.|.+++-++..+.+..+...++ .-|.+.+++--|-+.|+.+..++|..
T Consensus 419 is~-~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 419 ISG-PEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred hcC-hhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 755 2333344444456788889999999988888875444444444444 34888888888888888887777653
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=2.1e-10 Score=100.83 Aligned_cols=225 Identities=11% Similarity=-0.010 Sum_probs=155.6
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CHhHHHHHHHHHHhcCC
Q 007871 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--K-NVISYNVMIAGLGMNGF 388 (586)
Q Consensus 312 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 388 (586)
.+..+|.+.|-+.+|+..++...+. .|-+.+|..|..+|.+..+.+.|+.++.+-.+ | ++....-+...+-..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 4445555555555555555554444 23344455555666666666666666655543 3 22233334555666677
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 007871 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468 (586)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 468 (586)
.++|.++|+...+. .+.+......+...|.-.++++.|+.+++++.. .|. .+++.|..+.-+|...+++|-++.-|+
T Consensus 306 ~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 77777777777663 233445555666667777778888888888777 454 456777778778878888888777777
Q ss_pred hCC---CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007871 469 SMP---MKP--NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 469 ~~~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 541 (586)
+.. ..| ....|..+.......||+..|.+.|+-++..+|++...++.|+-.-.+.|+.++|..+++.......
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 651 223 3577888888888899999999999999999999999999999999999999999999988876543
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.30 E-value=1.1e-09 Score=112.18 Aligned_cols=243 Identities=12% Similarity=0.014 Sum_probs=175.3
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh---------ccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 007871 287 NPKEALYLFREMLCQGVRPDVISVMGAISACA---------QVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357 (586)
Q Consensus 287 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 357 (586)
++++|...|++..+.. +-+...+..+..++. ..++.++|...++.+.+.+ +.+...+..+..++...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 4578888898888753 223444544444332 2345788999999988876 4466778888888899999
Q ss_pred HHHHHHHHhccCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHH
Q 007871 358 LDEARRIFYSMTK--K-NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL-IFLGVLIACSHSGLATEGYRIFQS 433 (586)
Q Consensus 358 ~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 433 (586)
+++|...|++..+ | +...+..+...+...|++++|+..+++..+ ..|+.. .+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999998763 3 466788888999999999999999999988 455532 333444456668999999999999
Q ss_pred hHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhcC---CC
Q 007871 434 MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPNLAL-WGTLLLACRNHQNVTLAEVVVEGLVELK---AD 508 (586)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~ 508 (586)
+... ..+.++..+..+..+|...|++++|...+.++ +..|+... .+.+...+...| ++|...++++.+.. |.
T Consensus 432 ~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 432 LRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 8772 22335566778889999999999999999887 34454433 444555567666 47888777777643 44
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 509 DCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 509 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
++.. ...+|.-.|+-+.+..+ +++.+.|
T Consensus 509 ~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 509 NPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred CchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4433 66667778887777777 7776654
No 64
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.30 E-value=2.4e-08 Score=99.61 Aligned_cols=262 Identities=13% Similarity=0.144 Sum_probs=183.1
Q ss_pred HHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc----CCCCcchHHHHHHHHhcCCCchhHHHHHHHhHh
Q 007871 30 QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI----YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKR 105 (586)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 105 (586)
..+..+...|+.|+-.||..++. .|+.. |+.+.|- +|.-| .+-+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLia-rYc~~-gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIA-RYCTK-GDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHH-HHccc-CCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------
Confidence 46777888899999999999999 89999 9999998 88887 2335567899999988888887776
Q ss_pred CCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC--CCChhhHHH
Q 007871 106 KGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE--IKDLVSWNL 183 (586)
Q Consensus 106 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ 183 (586)
.|-..||..|..+|...||+..-..+-+.|.. +...+...|--.....++..+. ......-..
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~------------i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n 144 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLES------------INQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN 144 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHH------------HHhhhhhhccCcHHHHHHhhcccCcccchhHHH
Confidence 68889999999999999998873333222322 3333444444444444443321 111222233
Q ss_pred HHHHHHhCCChhHHHHHHhhCC--CCChhHHHHHHHHHhhccCCHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCCHHHH
Q 007871 184 VLRGFVECGEMGKAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHMPI-KDLISWNSMIDGYAKIGDLVAA 260 (586)
Q Consensus 184 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 260 (586)
.+...+-.|-++.+++++..+. ..+. ++..++..+-.....+++-..+.+.... ++..++.+++..-.-.|+++.|
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhH
Confidence 4555666777888888887776 2222 2222355442334455665555555554 7999999999999999999999
Q ss_pred HHHHhhCCCC----ChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007871 261 QQLFNEMPER----NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321 (586)
Q Consensus 261 ~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 321 (586)
..++.+|.+. +..-|..|+.+ .++...+..+++-|...|+.|+..|+...+..+...|
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 9999999863 22223334333 7888899999999999999999999888777766643
No 65
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.29 E-value=2e-07 Score=89.92 Aligned_cols=480 Identities=12% Similarity=0.114 Sum_probs=244.8
Q ss_pred hccCCCCChHHHHHHHhcc-----CCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCc
Q 007871 54 LTSPNTLNMDQAERLFNQI-----YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128 (586)
Q Consensus 54 ~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 128 (586)
....+ |++..-++.|++. .......|...+.-....+-++-++.+|++.++- ++..-+--|..++..+++
T Consensus 111 ~l~~Q-~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~ 185 (835)
T KOG2047|consen 111 FLIKQ-GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRL 185 (835)
T ss_pred HHHhc-chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccch
Confidence 33444 5555555555443 1122334555555444555555555555555442 122233444445555555
Q ss_pred hHHHHHHHHHHHh------CCCCchhHHHHHHHHHHhcCCh---hHHHHHhccCCCC--C--hhhHHHHHHHHHhCCChh
Q 007871 129 VEGTEIHGEVVKM------GFLCDVFVVNGLIGMYSKCGHM---GCARSVFEGSEIK--D--LVSWNLVLRGFVECGEMG 195 (586)
Q Consensus 129 ~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~--~--~~~~~~l~~~~~~~g~~~ 195 (586)
++|.+.+...+.. ..+.+...|..+....++..+. -....++..+... | ...|+.|..-|++.|.++
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~e 265 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFE 265 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhH
Confidence 5555555444321 1122333344433333332221 1122222222221 1 245888888888888888
Q ss_pred HHHHHHhhCC--CCChhHHHHHHHHHh---------------hccCC------HHHHHHHHHhCCCC-------------
Q 007871 196 KAREVFDEMP--QKDAISWSIMIDGYR---------------KKKGD------ISSARILFEHMPIK------------- 239 (586)
Q Consensus 196 ~A~~~~~~~~--~~~~~~~~~ll~~~~---------------~~~g~------~~~a~~~~~~~~~~------------- 239 (586)
+|..+|++.. .-....|..+.++|. ...|+ ++-...-|+.+...
T Consensus 266 karDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn 345 (835)
T KOG2047|consen 266 KARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQN 345 (835)
T ss_pred HHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcC
Confidence 8888887766 222223333333330 01111 11122223332211
Q ss_pred --ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---C------ChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--
Q 007871 240 --DLISWNSMIDGYAKIGDLVAAQQLFNEMPE---R------NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD-- 306 (586)
Q Consensus 240 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~-- 306 (586)
++..|..-+. ...|+..+-...|.+... | -...|..+...|-..|+.+.|..+|++..+-..+--
T Consensus 346 ~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d 423 (835)
T KOG2047|consen 346 PHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED 423 (835)
T ss_pred CccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH
Confidence 1222222222 123444444444444321 1 124566677777777777777777777765432211
Q ss_pred -HHHHHHHHHHHhccCChhHHHHHHHHHHHcCCC-----------C------chhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007871 307 -VISVMGAISACAQVGALDLGKWIHVFMKRSRIT-----------M------DMIVQTALIDMYMKCGSLDEARRIFYSM 368 (586)
Q Consensus 307 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 368 (586)
..+|......-.+..+++.|..+++......-. + +..+|...++.--..|-++....+++.+
T Consensus 424 La~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdri 503 (835)
T KOG2047|consen 424 LAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRI 503 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 123333334444556666676666554322111 1 1223444444444556666666666666
Q ss_pred CCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhh---ccCCHHHHHHHHHHhHHhhCCC
Q 007871 369 TKK---NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACS---HSGLATEGYRIFQSMKRHCGIE 441 (586)
Q Consensus 369 ~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~ 441 (586)
.+- .+..-......+-.+.-++++.+.|++-+..=-.|+. ..|+..+.-+. .....+.|..+|+++.+ +.+
T Consensus 504 idLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cp 581 (835)
T KOG2047|consen 504 IDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCP 581 (835)
T ss_pred HHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCC
Confidence 532 2211111222233455567777777765554334444 34555554442 23468899999999998 777
Q ss_pred CCh--HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc--hH
Q 007871 442 PKL--EHYSCLVDLLSRAGELEQALNIVESMPMKPN----LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG--LY 513 (586)
Q Consensus 442 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~--~~ 513 (586)
|.. ..|......-.+-|....|+.+++++...-. ...|+..+.-....=-...-..+|+++++.-|++.. .-
T Consensus 582 p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mc 661 (835)
T KOG2047|consen 582 PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMC 661 (835)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHH
Confidence 643 2333344444566888899999998843322 345565555444333455567888888887666432 34
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 514 VLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 514 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
...++.-.+.|..+.|+.+|.-..+..-+
T Consensus 662 lrFAdlEtklGEidRARaIya~~sq~~dP 690 (835)
T KOG2047|consen 662 LRFADLETKLGEIDRARAIYAHGSQICDP 690 (835)
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhcCCC
Confidence 44677788999999999999776655433
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=1.4e-10 Score=101.88 Aligned_cols=235 Identities=13% Similarity=0.091 Sum_probs=191.8
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 007871 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355 (586)
Q Consensus 276 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 355 (586)
+.+..+|.+.|.+.+|.+.|+..++. .|-+.||..+-..|.+..++..|..++.+-.+. ++.++.........+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56778888889999999888888876 667778888888899988998888888877665 244555555677778888
Q ss_pred CCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHH
Q 007871 356 GSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432 (586)
Q Consensus 356 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (586)
++.++|.++++...+ .++.+..++...|.-.++++-|+..|+++.+.|+ .++..|+.+.-+|...+++|-++..|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 899999999988775 3566666777788899999999999999999885 467788899999999999999999999
Q ss_pred HhHHhhCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007871 433 SMKRHCGIEPK--LEHYSCLVDLLSRAGELEQALNIVESM--PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508 (586)
Q Consensus 433 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 508 (586)
+.... --.|+ ...|-.+.......|++..|...|+-. ....+...++.|...-.+.|+++.|..++..+....|.
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 98873 34344 467888999999999999999999877 33346788999988889999999999999999999887
Q ss_pred CcchHHH
Q 007871 509 DCGLYVL 515 (586)
Q Consensus 509 ~~~~~~~ 515 (586)
-......
T Consensus 462 m~E~~~N 468 (478)
T KOG1129|consen 462 MAEVTTN 468 (478)
T ss_pred ccccccc
Confidence 5544333
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=2.5e-09 Score=97.48 Aligned_cols=199 Identities=15% Similarity=0.032 Sum_probs=105.7
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007871 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351 (586)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (586)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++...+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------------- 96 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP------------- 96 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------------
Confidence 3455556666666666666666666665542 22344444455555555555555555555544431
Q ss_pred HHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHH
Q 007871 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRI 430 (586)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 430 (586)
.+...+..+...+...|++++|...+++.......| ....+..+..++...|++++|...
T Consensus 97 -------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 97 -------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred -------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 222334444444555555555555555554421111 223444455556666666666666
Q ss_pred HHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007871 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP-M-KPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505 (586)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 505 (586)
+.+... ..+.+...+..++..+...|++++|...+++.. . +++...+..+...+...|+.+.|..+.+.+...
T Consensus 158 ~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQ--IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHH--hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 666655 223344555566666666666666666665541 1 223444444555556666666666666655443
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.26 E-value=7.5e-10 Score=93.03 Aligned_cols=162 Identities=15% Similarity=0.020 Sum_probs=109.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 007871 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454 (586)
Q Consensus 376 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (586)
...|.-.|...|+...|..-+++.++ ..|+. .++..+...|.+.|+.+.|.+.|+...+ --+.+..+.|..+.-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHH
Confidence 34455567777777777777777766 34443 4666666677777777777777777766 3344566677777777
Q ss_pred hhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 007871 455 SRAGELEQALNIVESMPMKP----NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530 (586)
Q Consensus 455 ~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 530 (586)
|..|++++|...|++.-..| ...+|..+..+..+.|+.+.|...|++.++.+|+.+.....++....+.|++..|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 77777777777777663333 24566666666667777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhCCC
Q 007871 531 RIRKMMRKRKI 541 (586)
Q Consensus 531 ~~~~~m~~~~~ 541 (586)
.++++....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 77777665544
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=9.8e-08 Score=87.16 Aligned_cols=271 Identities=9% Similarity=-0.043 Sum_probs=194.7
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHH---HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007871 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW---SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314 (586)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 314 (586)
+.|+.....+...+...|+..+|+..|++...-|+.+. ....-.+...|+++....+...+.... .-+...|..-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 45788888899999999999999999988775443322 222333456788888777777766432 12233333334
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC--C-CCHhHHHHHHHHHHhcCChHH
Q 007871 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT--K-KNVISYNVMIAGLGMNGFGEE 391 (586)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~ 391 (586)
.......++..|..+-+..++.+ +.+...+-.-..++...|+.++|.-.|+... . .+...|..|+.+|...|++.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 44456677888888877777664 2234444444566778889999888887665 3 477889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHhhc-cCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHH
Q 007871 392 ALKCFAQMETEGIPKDDLIFLGVL-IACSH-SGLATEGYRIFQSMKRHCGIEP-KLEHYSCLVDLLSRAGELEQALNIVE 468 (586)
Q Consensus 392 A~~~~~~m~~~g~~p~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 468 (586)
|..+-+..... ++.+..+...+. ..|.. ..--++|.++++...+ +.| -....+.+...+...|..++++.+++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 98887776653 455666776663 44433 3345778888887766 344 45677788888899999999999998
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHH
Q 007871 469 SM-PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYV 514 (586)
Q Consensus 469 ~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 514 (586)
+. ...||...-+.+...+...+.+++|...|..++.++|++.....
T Consensus 463 ~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~ 509 (564)
T KOG1174|consen 463 KHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLR 509 (564)
T ss_pred HHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHH
Confidence 77 56688888888999999999999999999999999998775443
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=2.3e-09 Score=109.90 Aligned_cols=212 Identities=11% Similarity=-0.027 Sum_probs=165.4
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh---------cCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCC
Q 007871 321 GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK---------CGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGF 388 (586)
Q Consensus 321 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 388 (586)
++.++|...++...+... .+...+..+..+|.. .+++++|...+++..+ .+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 346789999999888753 244556666655442 3458899999988774 466788888888999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 007871 389 GEEALKCFAQMETEGIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467 (586)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 467 (586)
+++|+..|++..+. .|+ ...+..+..++...|++++|...++++.+. .+.+...+..++..+...|++++|...+
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999984 555 567888888999999999999999999882 2233334444555677789999999999
Q ss_pred HhCC--CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 468 ESMP--MKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 468 ~~~~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
++.. ..| ++..+..+..++...|++++|...++++....|.+......++..|...| +.|...++.+.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 8872 235 34556677777889999999999999998888988888999999999888 4888888887654
No 71
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=1.4e-11 Score=80.35 Aligned_cols=50 Identities=30% Similarity=0.609 Sum_probs=40.6
Q ss_pred CCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhc
Q 007871 75 PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124 (586)
Q Consensus 75 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 124 (586)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888887764
No 72
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=2.4e-08 Score=89.19 Aligned_cols=445 Identities=10% Similarity=-0.021 Sum_probs=235.6
Q ss_pred HHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 007871 84 IRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHM 163 (586)
Q Consensus 84 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 163 (586)
+.-+....++..|+.+++--...+-+-...+-.-+..++.+.|++++|...+..+... -.++...+.-|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 5666667777777777776554332212222233344556677777777777766653 244555555555555666667
Q ss_pred hHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCCh--
Q 007871 164 GCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL-- 241 (586)
Q Consensus 164 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~-- 241 (586)
.+|..+-...+. ++..-..+.....+.++-++-..+-+.+.+..... -++...- -.+-.+++|++++++....++
T Consensus 108 ~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~Edq-LSLAsvh-YmR~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQ-LSLASVH-YMRMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred HHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHH-HhHHHHH-HHHHHHHHHHHHHHHHHhcChhh
Confidence 777666554432 22233334444445555555555444443111111 1111111 122345555555555553322
Q ss_pred hHHHH-HHHHHHhcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHH-HHHH
Q 007871 242 ISWNS-MIDGYAKIGDLVAAQQLFNEMPE--RN-VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG-AISA 316 (586)
Q Consensus 242 ~~~~~-l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~-l~~~ 316 (586)
...|. +.-+|.+..-++-+.++++.-.+ || +.+-|.......+.=+-..|.+-.+++...+-.. .-+.. +++.
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--~~f~~~l~rH 262 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--YPFIEYLCRH 262 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--chhHHHHHHc
Confidence 12222 22334444444444444443332 22 2333333333333222233333333333332111 00100 0000
Q ss_pred -HhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcC-------C
Q 007871 317 -CAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG-------F 388 (586)
Q Consensus 317 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-------~ 388 (586)
+.--.+-+.|.+++--+.+. -| ..-..|+-.|.+.+++.+|..+.+++...++.-|-.-.-.++..| .
T Consensus 263 NLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred CeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHH
Confidence 01112334455544333322 11 223346667889999999999999988655544433333333333 3
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 007871 389 GEEALKCFAQMETEGIPKDDL-IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467 (586)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 467 (586)
..-|.+.|+-.-+.+..-|.. .-.++..++.-..++++.+.+++.+.. +-...|.. --.+..+++..|++.+|+++|
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~F-n~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDF-NLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchh-hhHHHHHHHHhcChHHHHHHH
Confidence 344555555444444443332 234555566667789999999998888 33333443 445889999999999999999
Q ss_pred HhCCCC--CCHHHHHH-HHHHHHhcCChHHHHHHHHHHHhcC-CC-CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 468 ESMPMK--PNLALWGT-LLLACRNHQNVTLAEVVVEGLVELK-AD-DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 468 ~~~~~~--p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
-.+... .+..+|.. +..+|...+..+.|-.+ +++.+ |. ........+..|.+.|.+=-|...|+.+......
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 887321 34555654 55567888888877554 45554 33 3344556678899999999899999888776554
Q ss_pred c
Q 007871 543 K 543 (586)
Q Consensus 543 ~ 543 (586)
|
T Consensus 494 p 494 (557)
T KOG3785|consen 494 P 494 (557)
T ss_pred c
Confidence 4
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=2.4e-09 Score=100.32 Aligned_cols=227 Identities=10% Similarity=-0.049 Sum_probs=127.0
Q ss_pred CCCchHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 007871 285 HGNPKEALYLFREMLCQG-VRPD--VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361 (586)
Q Consensus 285 ~~~~~~A~~~~~~m~~~g-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 361 (586)
.+..+.++..+.+++... ..|+ ...|......+...|+.+.|...|+...+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 455666777777776532 1222 2345556666677777777777777777664 33556677777777777777777
Q ss_pred HHHHhccCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhh
Q 007871 362 RRIFYSMTK--K-NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC 438 (586)
Q Consensus 362 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 438 (586)
...|+...+ | +..+|..+...+...|++++|++.+++... ..|+..........+...++.++|...+.....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~-- 193 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE-- 193 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Confidence 777776653 3 345666666677777777777777777766 344432111112223345667777777765544
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHH--HHHHHHhC-CCC----C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CC
Q 007871 439 GIEPKLEHYSCLVDLLSRAGELEQ--ALNIVESM-PMK----P-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKA-DD 509 (586)
Q Consensus 439 ~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~~----p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~ 509 (586)
...++...+ .+.. ...|+... +.+.+.+. ... | ....|..+...+...|++++|+..|+++.+.+| +.
T Consensus 194 ~~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 194 KLDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred hCCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 222322211 2222 22343322 23222221 111 1 234566666777777777777777777777775 33
Q ss_pred cchHHHHHHH
Q 007871 510 CGLYVLLSNI 519 (586)
Q Consensus 510 ~~~~~~l~~~ 519 (586)
+.....++..
T Consensus 271 ~e~~~~~~e~ 280 (296)
T PRK11189 271 VEHRYALLEL 280 (296)
T ss_pred HHHHHHHHHH
Confidence 3333434433
No 74
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=6.7e-11 Score=77.17 Aligned_cols=50 Identities=32% Similarity=0.573 Sum_probs=45.0
Q ss_pred CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007871 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319 (586)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 319 (586)
||+.+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999988864
No 75
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.18 E-value=2.8e-07 Score=89.21 Aligned_cols=409 Identities=12% Similarity=0.063 Sum_probs=220.6
Q ss_pred cCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCC---ChhhHHHHHHHHHhCCChhHHHHHH
Q 007871 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK---DLVSWNLVLRGFVECGEMGKAREVF 201 (586)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~ 201 (586)
.+.+....+..+.+.+ +.+.-..+.....-.+...|+.++|.+........ +.+.|..+.-.+....++++|++.|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 3444444555555444 22333334443333444556666666666544432 4456666666666667777777777
Q ss_pred hhCC--CCChhHHHHHHHHHhhccCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC
Q 007871 202 DEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHMP---IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE-----RN 271 (586)
Q Consensus 202 ~~~~--~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~ 271 (586)
.... .||....--=+..+..+.|+++.......... +.....|..+..++.-.|+...|..+++...+ ++
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s 178 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPS 178 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 6665 33332221112222245555555555543333 22445566666677777777777777666542 33
Q ss_pred hhHHHHH------HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCChhHHHHHHHHHHHcCCCCchhH
Q 007871 272 VFSWSIM------IDGYAQHGNPKEALYLFREMLCQGVRPDVISV-MGAISACAQVGALDLGKWIHVFMKRSRITMDMIV 344 (586)
Q Consensus 272 ~~~~~~l------~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 344 (586)
...+... .......|.++.|++.+.+-... ..|...+ .+-...+.+.+++++|..++..++... ||..-
T Consensus 179 ~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~ 254 (700)
T KOG1156|consen 179 KEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLD 254 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHH
Confidence 3333221 23445667777777766654432 2233222 234445667778888888887777764 44443
Q ss_pred H-HHHHHHHHhcCCHHHHH-HHHhccCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 007871 345 Q-TALIDMYMKCGSLDEAR-RIFYSMTK--K-NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419 (586)
Q Consensus 345 ~-~~l~~~~~~~g~~~~a~-~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 419 (586)
| ..+..++.+-.+.-++. .+|....+ | ....-..-+....-..-.+..-.++..+.+.|+++-...+..+-.
T Consensus 255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk--- 331 (700)
T KOG1156|consen 255 YYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK--- 331 (700)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh---
Confidence 3 33444443222323333 45544432 1 000000001111112223444556667777776654433333321
Q ss_pred ccCCHHHHHHHHHHhHH---hhC----------CCCChHHH--HHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHH
Q 007871 420 HSGLATEGYRIFQSMKR---HCG----------IEPKLEHY--SCLVDLLSRAGELEQALNIVESM-PMKPN-LALWGTL 482 (586)
Q Consensus 420 ~~g~~~~A~~~~~~~~~---~~~----------~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l 482 (586)
.-...+-..++.-.+.. ..| -+|....| -.++..+-+.|+++.|..+++.. .-.|+ +..|..-
T Consensus 332 ~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~K 411 (700)
T KOG1156|consen 332 DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVK 411 (700)
T ss_pred chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHH
Confidence 11111111111111111 000 14444433 34677788899999999999877 33454 3445455
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007871 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 483 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 541 (586)
.+.+...|++++|..+++++.+++-.|..+-..-+.-..++++.++|.++.-...+.|.
T Consensus 412 aRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 412 ARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 56688889999999999999999888877777788888899999999999888877765
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=4.8e-07 Score=82.80 Aligned_cols=386 Identities=12% Similarity=0.020 Sum_probs=230.3
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCCC-ChhhHHHHHHHHHhCC-ChhHHHHHHhhCCCCChhHHHHHHHHHhhcc
Q 007871 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIK-DLVSWNLVLRGFVECG-EMGKAREVFDEMPQKDAISWSIMIDGYRKKK 223 (586)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 223 (586)
+...-...+.+|-..++.+.|..++.+++.. ...-.+.++..+.+.| +..++.--+......-+.....+...+.-.-
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 4455666778888888888888888777654 3333444444443333 2222222222221111111111111110000
Q ss_pred CCHHHHHHHHHhCC-CCChhHHHHHHH--HHHhcCCHHHHHHHHhhCC-----CCChhHHHHHHHHHHhCCCchHHHHHH
Q 007871 224 GDISSARILFEHMP-IKDLISWNSMID--GYAKIGDLVAAQQLFNEMP-----ERNVFSWSIMIDGYAQHGNPKEALYLF 295 (586)
Q Consensus 224 g~~~~a~~~~~~~~-~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~ 295 (586)
...+.+-.....+. .+........+. +.+-.++...|...+-.+. ..|+.....+...+...|+.+.|...|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 11111111111111 122222222222 2333444444443333222 256777888888899999999999999
Q ss_pred HHHHHCCCCCCHHH-HHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---C
Q 007871 296 REMLCQGVRPDVIS-VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---K 371 (586)
Q Consensus 296 ~~m~~~g~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~ 371 (586)
++.+.. .|+..+ .....-.+.+.|+.+....+...+.... .-+...|-.-.......++++.|+.+-++..+ .
T Consensus 256 e~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r 332 (564)
T KOG1174|consen 256 SSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR 332 (564)
T ss_pred HHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc
Confidence 887754 343322 1222223456677777766666654432 11222222223333456778888888877664 3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHH
Q 007871 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450 (586)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 450 (586)
++..+-.-...+...|++++|.-.|+..+. +.| +..+|..|+.+|...|.+.+|.-.-+...+ -++.+..+...+
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~ 408 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLF 408 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhhcchhhhhhh
Confidence 445555555678888999999999998877 565 457899999999999999999888888777 455666666555
Q ss_pred H-HHHhh-cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 007871 451 V-DLLSR-AGELEQALNIVESM-PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMW 526 (586)
Q Consensus 451 ~-~~~~~-~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 526 (586)
+ ..+.- -..-++|.+++++. ...|+ ....+.+...|...|.+++++.++++.+...|++ .....|++++...+.+
T Consensus 409 g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 409 GTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEP 487 (564)
T ss_pred cceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhH
Confidence 3 33322 22347888888876 56675 4455666677888999999999999988876654 4788899999999999
Q ss_pred hHHHHHHHHHHhC
Q 007871 527 EHALRIRKMMRKR 539 (586)
Q Consensus 527 ~~A~~~~~~m~~~ 539 (586)
.+|.+.|....+.
T Consensus 488 Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 488 QKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998887654
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.17 E-value=1.8e-06 Score=85.55 Aligned_cols=400 Identities=13% Similarity=0.049 Sum_probs=253.3
Q ss_pred CCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC----C-Chhh
Q 007871 106 KGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI----K-DLVS 180 (586)
Q Consensus 106 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~-~~~~ 180 (586)
..++-|...|..+--++.+.|++..+.+.|++....- -.....|..+...|..+|.-..|..+++.... | |+..
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3355677788888888888899999999998877633 33556788888889999998899988876543 2 3334
Q ss_pred HHHHHHHHHh-CCChhHHHHHHhhCC--------CCChhHHHHHHHHHh---hcc-------CCHHHHHHHHHhCC---C
Q 007871 181 WNLVLRGFVE-CGEMGKAREVFDEMP--------QKDAISWSIMIDGYR---KKK-------GDISSARILFEHMP---I 238 (586)
Q Consensus 181 ~~~l~~~~~~-~g~~~~A~~~~~~~~--------~~~~~~~~~ll~~~~---~~~-------g~~~~a~~~~~~~~---~ 238 (586)
+-..-..|.+ -|..++++.+..+.. .-....+..+.-+|. ... ....++.+.+++.. +
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 4433444443 356666665555444 112222322222220 111 12344555566663 3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHHH
Q 007871 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPE----RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD-VISVMGA 313 (586)
Q Consensus 239 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~-~~~~~~l 313 (586)
.|+.+...+.--|+..++++.|.+...+..+ .+...|..+.-.+...+++.+|+.+.+..... .|+ ......-
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGK 553 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhh
Confidence 3666655666667888899999888877654 56788888888888999999999999887753 111 1111111
Q ss_pred HHHHhccCChhHHHHHHHHHHH---------------------cCC-------CCchhHHHHHHHHHHhcCC---HHHHH
Q 007871 314 ISACAQVGALDLGKWIHVFMKR---------------------SRI-------TMDMIVQTALIDMYMKCGS---LDEAR 362 (586)
Q Consensus 314 ~~~~~~~~~~~~a~~~~~~~~~---------------------~~~-------~~~~~~~~~l~~~~~~~g~---~~~a~ 362 (586)
+..-...++.+++......+.. .|. .....++..+.......+. .+..+
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 1111223333333322221110 111 1112233322222211111 11111
Q ss_pred HHHhccCCCC------HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 363 RIFYSMTKKN------VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 363 ~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
..+.....|+ ...|......+.+.++.++|...+.+.... .+-....|......+...|.+.+|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 1111111232 234666677788999999999888888773 334456777777888889999999999998876
Q ss_pred hhCCCCChHHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc
Q 007871 437 HCGIEPKLEHYSCLVDLLSRAGELEQALN--IVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511 (586)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 511 (586)
-.|.++.+..+++.++...|+..-|.. ++..+ ...| +...|..+...+.+.|+.+.|...|..+.++.+.+|.
T Consensus 713 --ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 713 --LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred --cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 344567889999999999998887777 77766 5555 7899999999999999999999999999999877663
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=3.2e-08 Score=92.80 Aligned_cols=213 Identities=17% Similarity=0.109 Sum_probs=128.7
Q ss_pred ChhHHHHHHHHHHHcC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHH
Q 007871 322 ALDLGKWIHVFMKRSR-ITM--DMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKC 395 (586)
Q Consensus 322 ~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~ 395 (586)
..+.+..-+..++... ..| ....|..+...|...|++++|...|++..+ .+...|+.+...+...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555555432 111 234566667777788888888887776653 3566777788888888888888888
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 007871 396 FAQMETEGIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474 (586)
Q Consensus 396 ~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 474 (586)
|++..+ +.|+ ..++..+..++...|++++|.+.++...+. .|+..........+...+++++|.+.+.+.....
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 888777 4554 456677777777788888888888877762 2322212222223345667888888775542111
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHH-------hcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007871 475 NLALWGTLLLACRNHQNVTLAEVVVEGLV-------ELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 475 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 541 (586)
+...|.. .......|+...+ ..++.+. +..|..+.+|..++.++.+.|++++|...|++..+.++
T Consensus 196 ~~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 1112221 1222334444433 2333333 34456667788888888888888888888887776554
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.13 E-value=2.3e-08 Score=84.29 Aligned_cols=192 Identities=13% Similarity=0.069 Sum_probs=153.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhc
Q 007871 345 QTALIDMYMKCGSLDEARRIFYSMTKK---NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSH 420 (586)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~ 420 (586)
...|.-.|...|+...|..-+++..+. +..+|..+...|.+.|..+.|.+.|++..+ +.|+. ...|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHh
Confidence 445667788889999999888888743 445788888888999999999999998888 45544 677777777888
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 007871 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVV 498 (586)
Q Consensus 421 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 498 (586)
.|.+++|.+.|++......+.--..+|..++-+..+.|+++.|.+.|++. ...| .+.....+.....+.|++..|..+
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 88999999999998886555556778889998899999999999999877 3333 466777788888889999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 499 VEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 499 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
+++.....+.+...+...+++-.+.|+.+.|-++=..+.+
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999888888888888888888888988888777666544
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.11 E-value=3.8e-06 Score=81.61 Aligned_cols=210 Identities=11% Similarity=-0.011 Sum_probs=131.5
Q ss_pred cCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHHHHhcCCCchhHHHH
Q 007871 23 KTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIRGYTQSSNPQKALSF 99 (586)
Q Consensus 23 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~A~~~ 99 (586)
++.....+..+.+.+.. |+..-.-++-+-.+... |+.++|....... ...+.+.|+++.-.+-...++++|+++
T Consensus 21 kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~l-g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCL-GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHhHHHHHHHHHHhC--CccchhHHhccchhhcc-cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 56667778888888743 44443334433123445 8999999998876 445667899999888888999999999
Q ss_pred HHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC----
Q 007871 100 YVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI---- 175 (586)
Q Consensus 100 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---- 175 (586)
|+.....+ +-|...+.-+.-.-+..|+++.....-.++.+.. +.....|..++.++.-.|+...|..+++....
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99998764 2355567666655567788888777777776632 22345778888888888999888888764432
Q ss_pred -CChhhHHHH------HHHHHhCCChhHHHHHHhhCC--CCChhHHHHHHHHHhhccCCHHHHHHHHHhCC
Q 007871 176 -KDLVSWNLV------LRGFVECGEMGKAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHMP 237 (586)
Q Consensus 176 -~~~~~~~~l------~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~ 237 (586)
++...+... .......|..++|++.+..-. --|...+...-..+..+.+++++|..++..+.
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 233222222 234455666666666665543 11222222222222244555555555555544
No 81
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=1.5e-06 Score=86.35 Aligned_cols=371 Identities=14% Similarity=0.090 Sum_probs=220.9
Q ss_pred ChhhHhHHHHH-hccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhC-C--------CCCCc
Q 007871 43 EPFTLSQLLMS-LTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK-G--------LLVDN 112 (586)
Q Consensus 43 ~~~~~~~ll~~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~--------~~~~~ 112 (586)
|+.|-..++.= +|..- |+.|.|.+-.+.+.. -..|..+.+.|.+.++.+-|.-.+-.|... | -.|+
T Consensus 725 d~~TRkaml~FSfyvti-G~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTI-GSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred CHHHHHhhhceeEEEEe-ccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 44444444431 56666 999999887766543 357999999999998888887777666321 1 1222
Q ss_pred ccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC-CChhhHHHHHHHHHhC
Q 007871 113 YTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI-KDLVSWNLVLRGFVEC 191 (586)
Q Consensus 113 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~ 191 (586)
.+=..+.-.....|.+++|+.++.+-++ |..|=+.|-..|.+++|.++-+.-.. .-..+|......+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 2222222233467899999999988776 34455677889999999988754332 1234677777777788
Q ss_pred CChhHHHHHHhhCCCC-----------------------ChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHH
Q 007871 192 GEMGKAREVFDEMPQK-----------------------DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMI 248 (586)
Q Consensus 192 g~~~~A~~~~~~~~~~-----------------------~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~ 248 (586)
++.+.|++.|++...| |...|......+ ...|+.+.|+.+|... ..|..++
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYl-ES~GemdaAl~~Y~~A-----~D~fs~V 945 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYL-ESVGEMDAALSFYSSA-----KDYFSMV 945 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHH-hcccchHHHHHHHHHh-----hhhhhhe
Confidence 8899999988876522 333333333333 6677777777777653 3466666
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----------
Q 007871 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISAC----------- 317 (586)
Q Consensus 249 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~----------- 317 (586)
+..|-+|+.++|-++-++- .|..+...+...|-..|++.+|..+|.+... |...|+.|
T Consensus 946 rI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred eeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHH
Confidence 7777777777777765554 3555666778888888888888888877652 22222222
Q ss_pred --hccC--ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC--------------CCCHhHHHHH
Q 007871 318 --AQVG--ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT--------------KKNVISYNVM 379 (586)
Q Consensus 318 --~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------------~~~~~~~~~l 379 (586)
...+ +.-.|-.+|++. |.. ....+..|-+.|.+.+|+++--.-. ..|+...+..
T Consensus 1015 lal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 2222 222233333322 111 1223445667777777666522111 1355666666
Q ss_pred HHHHHhcCChHHHHHHHHHHHH----------CCC----------------CCCH----HHHHHHHHHhhccCCHHHHHH
Q 007871 380 IAGLGMNGFGEEALKCFAQMET----------EGI----------------PKDD----LIFLGVLIACSHSGLATEGYR 429 (586)
Q Consensus 380 ~~~~~~~~~~~~A~~~~~~m~~----------~g~----------------~p~~----~~~~~l~~~~~~~g~~~~A~~ 429 (586)
...++...++++|..++-...+ .|+ .|+. ..+..+...|.++|.+..|-+
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 6666666666666655433221 111 1222 245566667778888877776
Q ss_pred HHHHhHHhhCCCCChHHHHHHHHHHhhcCCHH
Q 007871 430 IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461 (586)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 461 (586)
-|.+.-.+ ...++++.+.|+.+
T Consensus 1167 KfTQAGdK----------l~AMraLLKSGdt~ 1188 (1416)
T KOG3617|consen 1167 KFTQAGDK----------LSAMRALLKSGDTQ 1188 (1416)
T ss_pred HHhhhhhH----------HHHHHHHHhcCCcc
Confidence 66554331 12345566666655
No 82
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=4.9e-06 Score=84.64 Aligned_cols=459 Identities=13% Similarity=0.127 Sum_probs=259.5
Q ss_pred HhHHHHHhccCCCCChHHHHHHHhccC--CCCcchHH----HHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHH
Q 007871 47 LSQLLMSLTSPNTLNMDQAERLFNQIY--QPNTYMHN----TMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120 (586)
Q Consensus 47 ~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~----~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 120 (586)
...+.+ +|.++ |-+..|++.+..+. +...++-+ --+..|.-.-.++.++++++.|...+++.|..+...+..
T Consensus 609 ra~IAq-LCEKA-GL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 609 RAEIAQ-LCEKA-GLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVAT 686 (1666)
T ss_pred HHHHHH-HHHhc-chHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344555 78888 88888888887772 11111111 113344555678899999999999888888887777777
Q ss_pred HHhccCCchHHHHHHHHHHHh-----------CCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCC-------------
Q 007871 121 ACGVLMGLVEGTEIHGEVVKM-----------GFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK------------- 176 (586)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------------- 176 (586)
-|...-..+...++|+..... ++..|+.+.-..|.+.++.|++.+..++.++-.--
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 776666666667777665432 35667778888899999999999998887543210
Q ss_pred ------------------Chhh------HHHHHHHHHhCCChhHHHHHHhhCC---------------CCChhHHHHHHH
Q 007871 177 ------------------DLVS------WNLVLRGFVECGEMGKAREVFDEMP---------------QKDAISWSIMID 217 (586)
Q Consensus 177 ------------------~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~---------------~~~~~~~~~ll~ 217 (586)
|... ....|..|++.=++.+.-.+...+. ........-+..
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHH
Confidence 1111 0112333333222211111111111 001111122223
Q ss_pred HHhhccCCHHHHHHHHHhCCC---CChhHHHHHHHH--------------------------------------------
Q 007871 218 GYRKKKGDISSARILFEHMPI---KDLISWNSMIDG-------------------------------------------- 250 (586)
Q Consensus 218 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~-------------------------------------------- 250 (586)
-+ .+++++.--...++.... .|+.++|+|...
T Consensus 847 Ev-EkRNRLklLlp~LE~~i~eG~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqc 925 (1666)
T KOG0985|consen 847 EV-EKRNRLKLLLPWLESLIQEGSQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQC 925 (1666)
T ss_pred HH-HhhhhHHHHHHHHHHHHhccCcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCC
Confidence 33 333443333333333321 133333333332
Q ss_pred --------------------HHhcCCHHHHHHHHhhCC-----------------CCChhHHHHHHHHHHhCCCchHHHH
Q 007871 251 --------------------YAKIGDLVAAQQLFNEMP-----------------ERNVFSWSIMIDGYAQHGNPKEALY 293 (586)
Q Consensus 251 --------------------~~~~g~~~~A~~~~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~A~~ 293 (586)
+.+..+.+--.+++.+-. ..|+...+.-+.++...+-+.+-++
T Consensus 926 D~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIE 1005 (1666)
T KOG0985|consen 926 DLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIE 1005 (1666)
T ss_pred cHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHH
Confidence 333333332222221110 0244444555566666666666666
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--
Q 007871 294 LFREMLCQGVRP-DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK-- 370 (586)
Q Consensus 294 ~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 370 (586)
++++..-..-.- .......++-.-+-..+..++..+.+++-..+. |+ +.......+-+++|..+|++...
T Consensus 1006 LLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~~n~ 1078 (1666)
T KOG0985|consen 1006 LLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKFDMNV 1078 (1666)
T ss_pred HHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHhcccH
Confidence 666655321110 111111111111112222333333333222210 11 11112222333444444433210
Q ss_pred -----------------------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHH
Q 007871 371 -----------------------KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427 (586)
Q Consensus 371 -----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 427 (586)
..+..|+.+..+-.+.|...+|++-|-+ .-|+..|..++..+.+.|.|++-
T Consensus 1079 ~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edL 1152 (1666)
T KOG0985|consen 1079 SAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDL 1152 (1666)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHH
Confidence 2456799999999999999999887753 33667899999999999999999
Q ss_pred HHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007871 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 507 (586)
.+++....++ .-.|... ..|+-+|++.+++.+-++++. -|+......+..-|...|.++.|.-+|...
T Consensus 1153 v~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v----- 1220 (1666)
T KOG0985|consen 1153 VKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV----- 1220 (1666)
T ss_pred HHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh-----
Confidence 9999888874 5566655 468899999999988777654 377777778888888889998888887644
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 508 DDCGLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 508 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
.-|..|+..+...|.|..|...-++.
T Consensus 1221 ---SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1221 ---SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45777888888888888777655443
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.5e-06 Score=83.39 Aligned_cols=412 Identities=12% Similarity=0.055 Sum_probs=240.1
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChh--hHHHHHHHHHhCCChhH
Q 007871 119 LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV--SWNLVLRGFVECGEMGK 196 (586)
Q Consensus 119 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~ 196 (586)
++.+...+++++|.+...++...+ +.|...+..=+-+....+.+++|+.+.+.-...+.. -+-.-.-+..+.+..++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 444567789999999999999866 556667777778888999999999777654422111 11122234457899999
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHH-hcCCHHHHHHHHhhCCC---CCh
Q 007871 197 AREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA-KIGDLVAAQQLFNEMPE---RNV 272 (586)
Q Consensus 197 A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~---~~~ 272 (586)
|+..++-..+-+..+...-...+ .+.|++++|..+|+.+.+.+...+...+.+-+ ..+-.-.+. +.+.... .+-
T Consensus 98 alk~~~~~~~~~~~ll~L~AQvl-Yrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 98 ALKTLKGLDRLDDKLLELRAQVL-YRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDSY 175 (652)
T ss_pred HHHHHhcccccchHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcchH
Confidence 99999955444433443334444 78999999999999987554433333322211 111111221 3444443 233
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHCC-------------CCCCHH-HHHHHHHHHhccCChhHHHHHHHHHHHcCC
Q 007871 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQG-------------VRPDVI-SVMGAISACAQVGALDLGKWIHVFMKRSRI 338 (586)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-------------~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 338 (586)
..+......++..|++.+|+++++...+.+ +..+.. .-..+.-.+-..|+..+|..+|..+++...
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 333345567788999999999999983221 111111 122344556788999999999999988864
Q ss_pred CCch---hHHHHHHHHHHhcCCH-H-HHHHHHhccCCC--------------CHhHHH-HHHHHHHhcCChHHHHHHHHH
Q 007871 339 TMDM---IVQTALIDMYMKCGSL-D-EARRIFYSMTKK--------------NVISYN-VMIAGLGMNGFGEEALKCFAQ 398 (586)
Q Consensus 339 ~~~~---~~~~~l~~~~~~~g~~-~-~a~~~~~~~~~~--------------~~~~~~-~l~~~~~~~~~~~~A~~~~~~ 398 (586)
...+ ...|.|+.+ ..-.++ + .++..++..... .....| .++..| .+.-+.+.++...
T Consensus 256 ~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~ 332 (652)
T KOG2376|consen 256 ADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSAS 332 (652)
T ss_pred CCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHh
Confidence 3221 222333322 111111 1 122222222211 111112 222222 2222333333322
Q ss_pred HHHCCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHH-------
Q 007871 399 METEGIPKDDLIFLGVLIACS--HSGLATEGYRIFQSMKRHCGIEPK-LEHYSCLVDLLSRAGELEQALNIVE------- 468 (586)
Q Consensus 399 m~~~g~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~------- 468 (586)
.. +..|.. .+..++..+. +...+..+..++..... +.+-+ ..+....+......|+++.|.+++.
T Consensus 333 lp--~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 333 LP--GMSPES-LFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred CC--ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 21 233333 3444444332 22257778888887776 44444 4566667788899999999999998
Q ss_pred -hCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 469 -SMP-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL-------KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 469 -~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.+. ....+.+...+...+.+.++.+.|..++.+++.. .+.--..+..++..-.+.|+-++|..+++++.+.
T Consensus 408 ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 408 SSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 332 2233445555666677777777777777777652 2222334555666677889999999999999885
Q ss_pred CC
Q 007871 540 KI 541 (586)
Q Consensus 540 ~~ 541 (586)
+.
T Consensus 488 n~ 489 (652)
T KOG2376|consen 488 NP 489 (652)
T ss_pred CC
Confidence 43
No 84
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.08 E-value=6.8e-07 Score=87.57 Aligned_cols=461 Identities=14% Similarity=0.108 Sum_probs=237.1
Q ss_pred cCchHHHHHHHHHHHc--------CCCCChhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCCch
Q 007871 23 KTTTHILQILAQLTTN--------DLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQ 94 (586)
Q Consensus 23 ~~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 94 (586)
|+...++.+++.+.-. |--.+.+-....+. +.. .++.+|+.+|-+-.. -..-|..|....+|+
T Consensus 504 ~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~la-il~---kkfk~ae~ifleqn~-----te~aigmy~~lhkwd 574 (1636)
T KOG3616|consen 504 GDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLA-ILE---KKFKEAEMIFLEQNA-----TEEAIGMYQELHKWD 574 (1636)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHH-HHH---hhhhHHHHHHHhccc-----HHHHHHHHHHHHhHH
Confidence 5555555555543221 11233333344444 443 458899988854321 223466677777888
Q ss_pred hHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhc--c
Q 007871 95 KALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE--G 172 (586)
Q Consensus 95 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~--~ 172 (586)
+|+.+-+. .|.+.-...-.+.++++...|.-+.|-++- . .+..+ .+-|..|.+.|.+..|..... +
T Consensus 575 e~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk----~----sdgd~-laaiqlyika~~p~~a~~~a~n~~ 642 (1636)
T KOG3616|consen 575 EAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELK----E----SDGDG-LAAIQLYIKAGKPAKAARAALNDE 642 (1636)
T ss_pred HHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc----c----ccCcc-HHHHHHHHHcCCchHHHHhhcCHH
Confidence 88876543 222222222334455555666655554431 1 12222 235777888888877766542 2
Q ss_pred CCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhH-HHHH----
Q 007871 173 SEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS-WNSM---- 247 (586)
Q Consensus 173 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~l---- 247 (586)
....|......+..++++..-+++|-.+|+++..++.. +..+ .+.+-+-+|.++-+-..+..++. -...
T Consensus 643 ~l~~de~il~~ia~alik~elydkagdlfeki~d~dka-----le~f-kkgdaf~kaielarfafp~evv~lee~wg~hl 716 (1636)
T KOG3616|consen 643 ELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKA-----LECF-KKGDAFGKAIELARFAFPEEVVKLEEAWGDHL 716 (1636)
T ss_pred HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHH-----HHHH-HcccHHHHHHHHHHhhCcHHHhhHHHHHhHHH
Confidence 22345555666666666666666777777766544321 2223 33333455555543333221111 1111
Q ss_pred ----------------------HHHHHhcCCHHHHHHHHhhCCCCChh--HHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 007871 248 ----------------------IDGYAKIGDLVAAQQLFNEMPERNVF--SWSIMIDGYAQHGNPKEALYLFREMLCQGV 303 (586)
Q Consensus 248 ----------------------~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 303 (586)
+.+......+.+|+.+++.+..+++. -|..+...|...|+++.|.++|.+.-
T Consensus 717 ~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---- 792 (1636)
T KOG3616|consen 717 EQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---- 792 (1636)
T ss_pred HHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc----
Confidence 22333444555555555555443322 24445555666666666655554321
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHH
Q 007871 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383 (586)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 383 (586)
.++-.+..|.+.|++..|..+-.+. .|.......|-+-..-+-..|++.+|.+++-.+..|+.. |..|
T Consensus 793 -----~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmy 860 (1636)
T KOG3616|consen 793 -----LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMY 860 (1636)
T ss_pred -----hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHH
Confidence 2334455555666665555544332 222333344444444455556666666666555555532 4555
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHH
Q 007871 384 GMNGFGEEALKCFAQMETEGIPKDD--LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461 (586)
Q Consensus 384 ~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 461 (586)
-+.|..+..+++..+- .|+. .|...+..-+...|+...|...|-+... |.+-++.|...+.|+
T Consensus 861 dk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~ 925 (1636)
T KOG3616|consen 861 DKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWE 925 (1636)
T ss_pred HhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHH
Confidence 6666666666555442 2222 3555566666667777777766654433 445556666666666
Q ss_pred HHHHHHHhCCCCC----CHHHHH-------------------HHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 007871 462 QALNIVESMPMKP----NLALWG-------------------TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSN 518 (586)
Q Consensus 462 ~A~~~~~~~~~~p----~~~~~~-------------------~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 518 (586)
+|-.+-+.-+-.. -...|. .-+...+..+-++-|..+.+-..+ ...+.....++.
T Consensus 926 dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~ 1003 (1636)
T KOG3616|consen 926 DAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAM 1003 (1636)
T ss_pred HHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhh
Confidence 6666554321100 001110 111112334444555444443332 334567778888
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCcc
Q 007871 519 IYADAGMWEHALRIRKMMRKRKIKK 543 (586)
Q Consensus 519 ~~~~~g~~~~A~~~~~~m~~~~~~~ 543 (586)
.+...|++++|...|-+..+.+.-+
T Consensus 1004 ~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 1004 FLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred hhhhccchhhhhHhhHHHhhccccc
Confidence 8999999999998888877765443
No 85
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.06 E-value=6.9e-07 Score=79.79 Aligned_cols=196 Identities=12% Similarity=0.080 Sum_probs=107.2
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCC
Q 007871 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGF 388 (586)
Q Consensus 312 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 388 (586)
..+..+...|+...|......+.+.. +.+...+..-..+|...|+...|+.-++... ..+...+.-+-..+...|+
T Consensus 160 ~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd 238 (504)
T KOG0624|consen 160 QQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD 238 (504)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh
Confidence 34445566677777777777777664 5567777777778888888877776665544 3556666666677777788
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHH-------------HHhhccCCHHHHHHHHHHhHHhhCCCC---ChHHHHHHHH
Q 007871 389 GEEALKCFAQMETEGIPKDDLIFLGVL-------------IACSHSGLATEGYRIFQSMKRHCGIEP---KLEHYSCLVD 452 (586)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~~~~~l~-------------~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~ 452 (586)
.+.++...++-.+ +.||.......- ......++|.++.+..+...+. .... ....+..+-.
T Consensus 239 ~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~-ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 239 AENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN-EPEETMIRYNGFRVLCT 315 (504)
T ss_pred HHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCcccceeeeeeheeee
Confidence 8888777777766 566653211110 0112334444444444444331 1110 1112223334
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc
Q 007871 453 LLSRAGELEQALNIVESM-PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511 (586)
Q Consensus 453 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 511 (586)
++...|++.+|++...+. .+.|+ ..++..-..+|.-...|+.|+.-|+++.+.+++|..
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 444555555555554444 23332 444444445555555555555555555555555443
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.9e-07 Score=86.46 Aligned_cols=236 Identities=11% Similarity=-0.014 Sum_probs=107.0
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHH-------
Q 007871 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTAL------- 348 (586)
Q Consensus 276 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------- 348 (586)
..+..+..+..++..|++.+....... -+..-++....++...|....+...-....+.|.. ...-|+.+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 344555555666666666666666543 23333344444556666666555555554444421 11112222
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHH
Q 007871 349 IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEG 427 (586)
Q Consensus 349 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A 427 (586)
..+|.+.++++.+...|.+...+... -....+....+++........- +.|.. .-...-...+.+.|++..|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHH
Confidence 22333344444455544443211000 0011112222333333333222 22222 1111123344555666666
Q ss_pred HHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007871 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505 (586)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 505 (586)
+..|.++++ ..|.|...|..-.-+|.+.|.+..|+.-.+.. ...| ....|..-..++....+|++|...|.+.++.
T Consensus 378 v~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 378 VKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666555 23445555666666666666665555544433 1222 2333333344444455566666666666666
Q ss_pred CCCCcchHHHHHHHHHhc
Q 007871 506 KADDCGLYVLLSNIYADA 523 (586)
Q Consensus 506 ~p~~~~~~~~l~~~~~~~ 523 (586)
+|.+..+...+.+++..+
T Consensus 456 dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 456 DPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred CchhHHHHHHHHHHHHHh
Confidence 666555555555554443
No 87
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.05 E-value=5.4e-08 Score=95.21 Aligned_cols=235 Identities=18% Similarity=0.134 Sum_probs=148.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC----------CChhH-HHHHHHHHHhCCCchHHHHHHHHHHHC-----C--C
Q 007871 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPE----------RNVFS-WSIMIDGYAQHGNPKEALYLFREMLCQ-----G--V 303 (586)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~~-~~~l~~~~~~~~~~~~A~~~~~~m~~~-----g--~ 303 (586)
.+...+...|...|+++.|..+++...+ +.+.+ .+.+...|...+++++|..+|+++... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455577778888888888887776653 22222 334667888999999999999998752 2 1
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHh-HHHHH
Q 007871 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVI-SYNVM 379 (586)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~-~~~~l 379 (586)
+--..++..|..+|.+.|++++|...++.+.+. ++... .+.+. .++.+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHHhhccChHHHHHHHHHH
Confidence 122346677777899999999998887765432 11100 11111 22333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHhhccCCHHHHHHHHHHhHHhh----C-CCC-ChHH
Q 007871 380 IAGLGMNGFGEEALKCFAQMETE---GIPKD----DLIFLGVLIACSHSGLATEGYRIFQSMKRHC----G-IEP-KLEH 446 (586)
Q Consensus 380 ~~~~~~~~~~~~A~~~~~~m~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~-~~~-~~~~ 446 (586)
...+...+++++|..++++..+. -..++ ..+++.|...|...|++++|.+++++++... + ..+ ....
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 44455555555555555543321 01121 2467777777777778777777777766532 1 111 2345
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 447 YSCLVDLLSRAGELEQALNIVESM--------PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
++.+...|.+.+++.+|.++|.+. +..|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 667777787778877777777654 23343 46678888888889999999888887774
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.05 E-value=1.3e-07 Score=93.68 Aligned_cols=148 Identities=14% Similarity=0.135 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhh-------------CCCCChH--HHHHHHHHHh
Q 007871 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC-------------GIEPKLE--HYSCLVDLLS 455 (586)
Q Consensus 391 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~~--~~~~l~~~~~ 455 (586)
.+...+..+...|+++- |..+-..|......+-..+++....... .-+|+.. ++..+...|.
T Consensus 129 ~~~~yl~~~l~KgvPsl---F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPSL---FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCchH---HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 34455566666665443 3333333444444444444444443311 1123332 3455677888
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 007871 456 RAGELEQALNIVESM-PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 456 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 533 (586)
..|++++|++++++. ...|+ +..|..-...+...|++.+|...++.+.++++.|..+....+..+.+.|+.++|..++
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999876 44564 6777777888999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCC
Q 007871 534 KMMRKRKI 541 (586)
Q Consensus 534 ~~m~~~~~ 541 (586)
....+.+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 88877665
No 89
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=7.6e-06 Score=83.31 Aligned_cols=461 Identities=13% Similarity=0.129 Sum_probs=240.2
Q ss_pred cCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCCchhHHHHHHH
Q 007871 23 KTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVN 102 (586)
Q Consensus 23 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 102 (586)
.++....-.++..++.| ..++.++|++.. +|....++++.-++ +- ..--+....-||..+++.-|.-.|++
T Consensus 852 NRLklLlp~LE~~i~eG-~~d~a~hnAlaK-IyIDSNNnPE~fLk---eN----~yYDs~vVGkYCEKRDP~lA~vaYer 922 (1666)
T KOG0985|consen 852 NRLKLLLPWLESLIQEG-SQDPATHNALAK-IYIDSNNNPERFLK---EN----PYYDSKVVGKYCEKRDPHLACVAYER 922 (1666)
T ss_pred hhHHHHHHHHHHHHhcc-CcchHHHhhhhh-eeecCCCChHHhcc---cC----CcchhhHHhhhhcccCCceEEEeecc
Confidence 34445556677777777 578889999998 88877344443322 21 11112223344444444433332222
Q ss_pred hHhC----CCCCCcccHHHHHHHHhccCCchHH-----------HHHHHHHHHhCC--CCchhHHHHHHHHHHhcCChhH
Q 007871 103 MKRK----GLLVDNYTYPFVLKACGVLMGLVEG-----------TEIHGEVVKMGF--LCDVFVVNGLIGMYSKCGHMGC 165 (586)
Q Consensus 103 m~~~----~~~~~~~~~~~ll~~~~~~~~~~~a-----------~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 165 (586)
-.-. ++--....|....+.+....+.+.- +++.++..+.++ ..|+.-.+.-++++...+-..+
T Consensus 923 GqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~e 1002 (1666)
T KOG0985|consen 923 GQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNE 1002 (1666)
T ss_pred cCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHH
Confidence 1100 0111112333333333333333322 234445555444 2355566666777777777777
Q ss_pred HHHHhccCCC-CC-----hhhHHHHHHH---------------------------HHhCCChhHHHHHHhhCCCCChhHH
Q 007871 166 ARSVFEGSEI-KD-----LVSWNLVLRG---------------------------FVECGEMGKAREVFDEMPQKDAISW 212 (586)
Q Consensus 166 a~~~~~~~~~-~~-----~~~~~~l~~~---------------------------~~~~g~~~~A~~~~~~~~~~~~~~~ 212 (586)
-.++++++.- ++ ...-|.++-. .+..+-+++|+.+|++.. .+....
T Consensus 1003 LIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~-~n~~A~ 1081 (1666)
T KOG0985|consen 1003 LIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD-MNVSAI 1081 (1666)
T ss_pred HHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc-ccHHHH
Confidence 7777776542 21 1222333322 333344444444444431 122222
Q ss_pred HHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHH
Q 007871 213 SIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292 (586)
Q Consensus 213 ~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 292 (586)
..++.. -++++.|.+.-++... +.+|..+..+-.+.|.+.+|++.|-+..+ +..|..++....+.|.|++-.
T Consensus 1082 ~VLie~----i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyikadD--ps~y~eVi~~a~~~~~~edLv 1153 (1666)
T KOG0985|consen 1082 QVLIEN----IGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKADD--PSNYLEVIDVASRTGKYEDLV 1153 (1666)
T ss_pred HHHHHH----hhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhcCC--cHHHHHHHHHHHhcCcHHHHH
Confidence 333322 2445555555444432 33455566666666666666655544433 334555566666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC
Q 007871 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372 (586)
Q Consensus 293 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 372 (586)
+++...++..-.|... +.++-+|++.+++.+.+.+.. .|+......+.+-+...|.++.|.-+|. +
T Consensus 1154 ~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~ 1219 (1666)
T KOG0985|consen 1154 KYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS-----N 1219 (1666)
T ss_pred HHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH-----H
Confidence 6665555544444333 245555666555554444331 3444444555555555555555555553 3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCC--CChHHHHHH
Q 007871 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE--PKLEHYSCL 450 (586)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~l 450 (586)
+..|..|...+...|++..|...-++. .+..||..+-.+|...+.+.-|. + +|+. ....-...+
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----i---CGL~iivhadeLeel 1285 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----I---CGLNIIVHADELEEL 1285 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----h---cCceEEEehHhHHHH
Confidence 456777777777888888777665542 34568888888888777665442 2 3433 345556778
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-C-C------CCcchHHHHHHHH
Q 007871 451 VDLLSRAGELEQALNIVESM-PM-KPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL-K-A------DDCGLYVLLSNIY 520 (586)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-p------~~~~~~~~l~~~~ 520 (586)
+..|-..|-+++-+.+++.. +. +.....|..+...|.+- +.++-.+.++-.... + | +....|..+...|
T Consensus 1286 i~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY 1364 (1666)
T KOG0985|consen 1286 IEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLY 1364 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 88888889888888888765 22 23344444444444332 334444444433331 1 1 2334566666666
Q ss_pred HhcCCchHHH
Q 007871 521 ADAGMWEHAL 530 (586)
Q Consensus 521 ~~~g~~~~A~ 530 (586)
.+-..|+.|.
T Consensus 1365 ~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1365 DKYEEYDNAA 1374 (1666)
T ss_pred HhhhhhhHHH
Confidence 6666666554
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.04 E-value=3.9e-07 Score=90.43 Aligned_cols=241 Identities=13% Similarity=0.085 Sum_probs=108.4
Q ss_pred hccCCHHHHHHHHHhCCCC--C-hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHH-HHHHHHHHh-----CCCch
Q 007871 221 KKKGDISSARILFEHMPIK--D-LISWNSMIDGYAKIGDLVAAQQLFNEMPE--RNVFSW-SIMIDGYAQ-----HGNPK 289 (586)
Q Consensus 221 ~~~g~~~~a~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~~-----~~~~~ 289 (586)
...|++++|.+.++..... | ..........+.+.|+.++|..+|..+.+ |+-..| ..+..+..- ..+.+
T Consensus 15 ~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~ 94 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVE 94 (517)
T ss_pred HHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHH
Confidence 4556666666666554321 2 23344555666666666666666666654 332332 233333211 12345
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChh-HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007871 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALD-LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368 (586)
Q Consensus 290 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 368 (586)
....+++++... -|.......+.-.+.....+. .+..++..+...|+++ +|+.+-..|....+..-..+++...
T Consensus 95 ~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 95 KLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred HHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHH
Confidence 555556655544 233333322222222222222 3344445555555432 3444444444333333333333221
Q ss_pred C------------------CCCHh--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHH
Q 007871 369 T------------------KKNVI--SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEG 427 (586)
Q Consensus 369 ~------------------~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A 427 (586)
. .|... ++..+...|...|++++|++++++.++ ..|+. ..|..-...+-+.|++.+|
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 1 01111 223334445555555555555555555 33432 3444444455555555555
Q ss_pred HHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
.+.++.... -..-|..+-+..+..+.++|++++|.+++...
T Consensus 248 a~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 248 AEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred HHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 555555544 22334444444455555555555555554443
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=5e-07 Score=85.72 Aligned_cols=232 Identities=13% Similarity=0.011 Sum_probs=159.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHH-------H
Q 007871 244 WNSMIDGYAKIGDLVAAQQLFNEMPE--RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA-------I 314 (586)
Q Consensus 244 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l-------~ 314 (586)
...+.+...+..+++.|.+.+....+ .++.-++....+|...|.+......-.+..+.|- -...-|+.+ .
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhh
Confidence 56677778888888888888887765 4455567777888888888888777777766652 222223333 3
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC--CCCHh-HHHHHHHHHHhcCChHH
Q 007871 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT--KKNVI-SYNVMIAGLGMNGFGEE 391 (586)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~ 391 (586)
.++.+.++.+.+...|.........|+.. .+....+++....+... .|... ....-...+.+.|++..
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHH
Confidence 34555677888888888765554333321 22334455555544333 23321 12223666889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 007871 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM- 470 (586)
Q Consensus 392 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 470 (586)
|+..|.+++... +-|...|.....+|.+.|.+..|+.-.+..++ -.++....|..-+.++....++++|.+.|++.
T Consensus 377 Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 377 AVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999963 44567899999999999999999998888887 34556677777778888888999999999887
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 007871 471 PMKPNLALWGTLLLACRN 488 (586)
Q Consensus 471 ~~~p~~~~~~~l~~~~~~ 488 (586)
...|+..-+..-+.-|..
T Consensus 454 e~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 454 ELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred hcCchhHHHHHHHHHHHH
Confidence 345655544444444444
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=2.2e-08 Score=92.34 Aligned_cols=250 Identities=13% Similarity=0.075 Sum_probs=147.8
Q ss_pred HHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHH
Q 007871 251 YAKIGDLVAAQQLFNEMPE----RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326 (586)
Q Consensus 251 ~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a 326 (586)
+.-.|++..++.-.+ ... .+......+.+++...|+++.++. +..... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344556665554333 111 122333445566666666554432 222222 45544444444444333333344
Q ss_pred HHHHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 007871 327 KWIHVFMKRSRIT-MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405 (586)
Q Consensus 327 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 405 (586)
..-++........ .+..+......++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+ ..
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--ID 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cC
Confidence 3333332222222 22233333345566678888888887765 4566677778888899999999999999887 34
Q ss_pred CCHHHHHHHHHHhh----ccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 007871 406 KDDLIFLGVLIACS----HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALW 479 (586)
Q Consensus 406 p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 479 (586)
.| .+...+..++. ..+.+.+|..+|+++.. ..++++.+.+.++.+....|++++|.+++.+. ...| ++.++
T Consensus 162 eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 44 34444555442 23468889999999877 56778888888888899999999999988776 3333 56677
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHhcCCCCcch
Q 007871 480 GTLLLACRNHQNV-TLAEVVVEGLVELKADDCGL 512 (586)
Q Consensus 480 ~~l~~~~~~~~~~-~~a~~~~~~~~~~~p~~~~~ 512 (586)
..++.+....|+. +.+.+++.++....|.++.+
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 7777776777776 66778888888888887743
No 93
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.00 E-value=7.8e-07 Score=90.24 Aligned_cols=277 Identities=12% Similarity=-0.011 Sum_probs=165.6
Q ss_pred HHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 007871 258 VAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334 (586)
Q Consensus 258 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 334 (586)
..|...+....+ .+..+||.|.-. ...|++.-+.-.|-+-.... +-...+|..+.-.+....+++.|...|...+
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 345555555443 556667666544 44466666666666555442 3455566666667777788888888888777
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC-----C---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH-----
Q 007871 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-----K---KNVISYNVMIAGLGMNGFGEEALKCFAQMET----- 401 (586)
Q Consensus 335 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----- 401 (586)
... +.+...+-.........|+.-++..+|..-. + ++..-|.+.......+|+.++-+...+++..
T Consensus 878 SLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 878 SLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 665 2344444444444455677777777776521 1 3333444444445566665554443333221
Q ss_pred ----CCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHH----HHHHHHhhcCCHHHHHHHHHhCCCC
Q 007871 402 ----EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS----CLVDLLSRAGELEQALNIVESMPMK 473 (586)
Q Consensus 402 ----~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~ 473 (586)
.|.+.....|.......-+.+.+..|.+...+.+.-...+.+...|+ .+.+.+...|.++.|..-+......
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence 12333446777777777777777777777666543111223334444 4567778888888887777665444
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD---CGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 474 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
-+......-+.. .-.|+++++...|+++......+ ......++.+...+|.-+.|...+-+...
T Consensus 1037 vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1037 VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 344433333333 34578999999999998865332 34566677777888888888877666544
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=1.1e-06 Score=76.87 Aligned_cols=420 Identities=12% Similarity=0.058 Sum_probs=242.2
Q ss_pred CCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC--CChhhHHH
Q 007871 106 KGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI--KDLVSWNL 183 (586)
Q Consensus 106 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ 183 (586)
.|+.....-+.+++..+.+..++..+.+++....+.. +.+....+.|..+|-+..++..|-..++++.. |...-|..
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 4455555567778887888888888888888776654 22556677888888888889888888887654 22222222
Q ss_pred -HHHHHHhCCChhHHHHHHhhCCC-CChhHHHH-HHHHHhhccCCHHHHHHHHHhCC-CCChhHHHHHHHHHHhcCCHHH
Q 007871 184 -VLRGFVECGEMGKAREVFDEMPQ-KDAISWSI-MIDGYRKKKGDISSARILFEHMP-IKDLISWNSMIDGYAKIGDLVA 259 (586)
Q Consensus 184 -l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~-ll~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 259 (586)
-...+.+.+.+.+|+.+...|.+ ++...-.. +-.+..-+.+++-.+..+++... +.+..+.+...-...+.|+++.
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHH
Confidence 23456678888888888888874 33222111 22223246677777777777776 3566666666666777788888
Q ss_pred HHHHHhhCCC----CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCChhHHHHHHHHHH
Q 007871 260 AQQLFNEMPE----RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV-MGAISACAQVGALDLGKWIHVFMK 334 (586)
Q Consensus 260 A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~ 334 (586)
|.+-|+...+ ....+||..+.. .+.++++.|++...+.+++|++..+..- .....+- ..+.+..-..+..
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi-DvrsvgNt~~lh~--- 237 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI-DVRSVGNTLVLHQ--- 237 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC-chhcccchHHHHH---
Confidence 8877777665 345566655443 3557777888888777777754322110 0000000 0000000000000
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CH
Q 007871 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK-----KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DD 408 (586)
Q Consensus 335 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~ 408 (586)
++ -+..+|.-...+.+.|+++.|.+.+.+|+. -|+++...+.-.- ..+++.+..+-+.-+... .| ..
T Consensus 238 -Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ 310 (459)
T KOG4340|consen 238 -SA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPP 310 (459)
T ss_pred -HH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCCh
Confidence 00 012234444456688999999999999984 3666655443221 234555555555555553 33 34
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCC-CChHHHHHHHHHHh-hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE-PKLEHYSCLVDLLS-RAGELEQALNIVESMPMKPNLALWGTLLLAC 486 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 486 (586)
.||..++-.|++..-++.|-.++.+-... .+. .+...|+ |++++. -.-..++|.+-++.....-....-...+..-
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQ 388 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQ 388 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999998888888887654331 111 2334444 344443 3346677776665542111111111111111
Q ss_pred -HhcCCh----HHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 007871 487 -RNHQNV----TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543 (586)
Q Consensus 487 -~~~~~~----~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 543 (586)
.++.+- ..+++-+++.+++. -.+...-++.|.+..++..+.+.|..-.+..-..
T Consensus 389 e~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~eh 447 (459)
T KOG4340|consen 389 EARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDH 447 (459)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhccc
Confidence 122221 22333344444432 1245566778899999999999998877655443
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.98 E-value=1.9e-06 Score=84.02 Aligned_cols=297 Identities=12% Similarity=-0.012 Sum_probs=171.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCh---hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007871 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPE---RNV---FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314 (586)
Q Consensus 241 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 314 (586)
...+..+...+...|+.+.+.+.+....+ ++. .........+...|++++|.+.+++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 34455555555556666665544444331 121 112223345567788888888888887752 333333332 1
Q ss_pred HHHh----ccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcC
Q 007871 315 SACA----QVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNG 387 (586)
Q Consensus 315 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 387 (586)
..+. ..+..+.+...+.. .....+........+...+...|++++|...+++..+ .+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 1222 23444444444443 1111122233444566778888999999888887763 34567777888888899
Q ss_pred ChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHH-H--HHHHHHhhcCCHH
Q 007871 388 FGEEALKCFAQMETEGI-PKDD--LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY-S--CLVDLLSRAGELE 461 (586)
Q Consensus 388 ~~~~A~~~~~~m~~~g~-~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~ 461 (586)
++++|..++++...... .|+. ..+..+...+...|++++|..+++.........+..... + .+...+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 99999999888776321 1232 235567778888999999999998875421111222111 1 2233333444322
Q ss_pred HHHHH---HHh---C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-C--------CCcchHHHHHHHHHhcCC
Q 007871 462 QALNI---VES---M-PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK-A--------DDCGLYVLLSNIYADAGM 525 (586)
Q Consensus 462 ~A~~~---~~~---~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~ 525 (586)
.+... .+. . ..............++...|+.+.|...++.+.... . .........+.++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 22222 111 1 111111222245556788899999999998887643 1 123445556777899999
Q ss_pred chHHHHHHHHHHhCC
Q 007871 526 WEHALRIRKMMRKRK 540 (586)
Q Consensus 526 ~~~A~~~~~~m~~~~ 540 (586)
+++|.+.+......+
T Consensus 323 ~~~A~~~L~~al~~a 337 (355)
T cd05804 323 YATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887654
No 96
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.98 E-value=4.3e-06 Score=82.17 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=28.0
Q ss_pred CChHHHHHHHhcc-CCCCcc-hHHHHHHHHhcCCCchhHHHHHHH
Q 007871 60 LNMDQAERLFNQI-YQPNTY-MHNTMIRGYTQSSNPQKALSFYVN 102 (586)
Q Consensus 60 ~~~~~A~~~~~~~-~~~~~~-~~~~ll~~~~~~~~~~~A~~~~~~ 102 (586)
|+++.|..+++.. ..|+.. .|-.+.......|+.--|.++|..
T Consensus 458 ~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaa 502 (1636)
T KOG3616|consen 458 GDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAA 502 (1636)
T ss_pred CchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 7888888888876 344443 566666666666666666555544
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.95 E-value=1.8e-08 Score=92.93 Aligned_cols=245 Identities=14% Similarity=0.062 Sum_probs=166.2
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 007871 280 DGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359 (586)
Q Consensus 280 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 359 (586)
+-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.+. ..+.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44556788988886665 222221223345556777888888766443 3333333 566666666665554445666
Q ss_pred HHHHHHhccC-CC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 007871 360 EARRIFYSMT-KK----NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434 (586)
Q Consensus 360 ~a~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 434 (586)
.+..-+++.. ++ +..........+...|++++|++++.+- .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7776665544 22 2222223334567789999999988642 45677778888999999999999999999
Q ss_pred HHhhCCCCChHHHHHHHHHHh----hcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007871 435 KRHCGIEPKLEHYSCLVDLLS----RAGELEQALNIVESMP--MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508 (586)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 508 (586)
.+ +..| .+...++.++. ....+.+|..+|+++. ..+++.+.+.+..++...|++++|+..++++.+.+|.
T Consensus 158 ~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 76 2333 33334444333 3347999999999994 3468888899999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCCc-hHHHHHHHHHHhC
Q 007871 509 DCGLYVLLSNIYADAGMW-EHALRIRKMMRKR 539 (586)
Q Consensus 509 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 539 (586)
++.+...++-+....|+. +.+.+++.++.+.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999999988 5677888887663
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.95 E-value=0.00012 Score=81.19 Aligned_cols=259 Identities=15% Similarity=0.049 Sum_probs=117.2
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChhHHHHHHHHHHHcCC---CC--chhHHHHHHHHH
Q 007871 282 YAQHGNPKEALYLFREMLCQGVRPDV----ISVMGAISACAQVGALDLGKWIHVFMKRSRI---TM--DMIVQTALIDMY 352 (586)
Q Consensus 282 ~~~~~~~~~A~~~~~~m~~~g~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~ 352 (586)
+...|+++.|...+++....-...+. .....+...+...|+++.|...+.......- .+ .......+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 34556666666666555442111111 1223333344555666666655555433211 00 112333444455
Q ss_pred HhcCCHHHHHHHHhccCC-------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHH
Q 007871 353 MKCGSLDEARRIFYSMTK-------K----NVISYNVMIAGLGMNGFGEEALKCFAQMETE--GIPKD--DLIFLGVLIA 417 (586)
Q Consensus 353 ~~~g~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~~p~--~~~~~~l~~~ 417 (586)
...|++++|...+++... + ....+..+...+...|++++|...+++.... ...+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 556666666655544321 0 0112233344455556666666666654431 11111 1233334444
Q ss_pred hhccCCHHHHHHHHHHhHHhhCCCCChHHH-----HHHHHHHhhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHH
Q 007871 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHY-----SCLVDLLSRAGELEQALNIVESMPMK--PNL----ALWGTLLLAC 486 (586)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~l~~~~ 486 (586)
+...|+++.|.+.++.+..-.........+ ...+..+...|+.+.|...+...... ... ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 555666666666666554310100000000 01113334456666666666554211 011 1122344445
Q ss_pred HhcCChHHHHHHHHHHHhcC------CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 487 RNHQNVTLAEVVVEGLVELK------ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 487 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
...|++++|...++++.+.. +....++..++.++.+.|+.++|.+.+.+..+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 56666666666666665532 1112344555666666666666666666665433
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=3.3e-08 Score=94.30 Aligned_cols=116 Identities=17% Similarity=0.168 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007871 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEG 501 (586)
Q Consensus 424 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 501 (586)
.....++|-.+....+..+|+.++..|+-.|--.|++++|+..|+.+ ..+| |..+|+.|...+....+.++|+..|.+
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~r 489 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNR 489 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHH
Confidence 34455566666554565688999999999999999999999999987 5666 788999999999999999999999999
Q ss_pred HHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 502 LVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 502 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
++++.|.-..+++.|+-.|...|.|++|...|-..+..
T Consensus 490 ALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 490 ALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988776543
No 100
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=1.1e-05 Score=80.46 Aligned_cols=257 Identities=13% Similarity=0.088 Sum_probs=128.1
Q ss_pred CcchHHHHHH--HHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHh-C--------CC
Q 007871 76 NTYMHNTMIR--GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKM-G--------FL 144 (586)
Q Consensus 76 ~~~~~~~ll~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~--------~~ 144 (586)
|..+-..+++ .|..-|+.+.|.+-.+.++. ...|..+.+.|.+.++++-|.-.+..|... | ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4445555553 34556777777766665543 245777777777777777666655555432 1 01
Q ss_pred CchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC-CCChhHHHHHHHHHhhcc
Q 007871 145 CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP-QKDAISWSIMIDGYRKKK 223 (586)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~ll~~~~~~~ 223 (586)
|+ .+-..........|.+++|..+|.+.+. |..|=..|-..|.+++|+++-+.=. -.=..||..-...+ ..+
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~L-ear 871 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYL-EAR 871 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHH-Hhh
Confidence 11 1222222233455566666666655443 2233334445566666665554322 01112333333333 445
Q ss_pred CCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 007871 224 GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303 (586)
Q Consensus 224 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 303 (586)
++.+.|++.|++...+--.++..|.. +........+++.++.. |.-...-+-..|+.+.|+.+|.....
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e------~p~~~e~Yv~~~~d~~L--~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKE------YPKQIEQYVRRKRDESL--YSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHh------ChHHHHHHHHhccchHH--HHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 55666666665544332222222211 22222333333333332 22223334456666777766665542
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007871 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368 (586)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 368 (586)
|-+++...|-.|+.++|.++-++- -|......+...|-..|++.+|..+|.+.
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 445556666666766666665431 24444555666677777777777666544
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.87 E-value=1.8e-07 Score=85.15 Aligned_cols=180 Identities=13% Similarity=-0.001 Sum_probs=116.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-H---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HH
Q 007871 341 DMIVQTALIDMYMKCGSLDEARRIFYSMTK--KN-V---ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD----LI 410 (586)
Q Consensus 341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~ 410 (586)
....+..+...+...|++++|...|+++.+ |+ . ..+..+..++...|++++|...++++.+. .|+. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 444566666777777888888777776653 22 1 35566677777778888888888877763 3322 13
Q ss_pred HHHHHHHhhcc--------CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 007871 411 FLGVLIACSHS--------GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482 (586)
Q Consensus 411 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 482 (586)
+..+..++... |+++.|.+.++.+... .+.+...+..+..... ..... ......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence 44455555443 6677777777777662 2223333222211111 00000 0011245
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 483 LLACRNHQNVTLAEVVVEGLVELKADD---CGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 483 ~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
...+...|++.+|+..++++.+..|++ +..+..++.++.+.|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556889999999999999999987765 478999999999999999999999988764
No 102
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.86 E-value=4.2e-06 Score=85.17 Aligned_cols=441 Identities=14% Similarity=0.042 Sum_probs=249.4
Q ss_pred chHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhC-CCCchhHHHHHHHH
Q 007871 78 YMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMG-FLCDVFVVNGLIGM 156 (586)
Q Consensus 78 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~ 156 (586)
..|..|...|....+..+|.+.|+...+.+ .-+..........++...+++.|..+.-..-+.. ...-...|....-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 367777777776667777888888776653 2245566677777888888888877732222211 01111223334445
Q ss_pred HHhcCChhHHHHHhccCC---CCChhhHHHHHHHHHhCCChhHHHHHHhhCC--CCChhHHHHHHHHHhhccCCHHHHHH
Q 007871 157 YSKCGHMGCARSVFEGSE---IKDLVSWNLVLRGFVECGEMGKAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSARI 231 (586)
Q Consensus 157 ~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~g~~~~a~~ 231 (586)
|.+.++...|..-|+... ++|...|..++.+|...|.+..|+++|.+.. .|+...-.-......+..|.+.++..
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 667777777777777544 3466778888888888888888888887766 55543322233333356777777777
Q ss_pred HHHhCCCC----------ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CChhHHHHHHHHHHhCCCchH
Q 007871 232 LFEHMPIK----------DLISWNSMIDGYAKIGDLVAAQQLFNEMPE-----------RNVFSWSIMIDGYAQHGNPKE 290 (586)
Q Consensus 232 ~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~ 290 (586)
.+..+... -..++-.+...+.-.|-...|.+.++...+ .+...|..+. .
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as----------d 721 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS----------D 721 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh----------H
Confidence 76655411 122222223333333333334443333221 1222222222 2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh---h---HHHHHHHHHHHcCCCCchhHHHHHHHHHHh----c----C
Q 007871 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGAL---D---LGKWIHVFMKRSRITMDMIVQTALIDMYMK----C----G 356 (586)
Q Consensus 291 A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~----g 356 (586)
|..+|-... .. .|+.+....+..-....+.. + -+...+-. ......++..|..++.-|.+ . .
T Consensus 722 ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~~~~WyNLGinylr~f~~l~et~~ 797 (1238)
T KOG1127|consen 722 ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIHMYPWYNLGINYLRYFLLLGETMK 797 (1238)
T ss_pred HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhccchHHHHhHHHHHHHHHcCCcch
Confidence 222222222 11 23333222222212222222 1 00000000 00011122233333332222 1 1
Q ss_pred CHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 007871 357 SLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433 (586)
Q Consensus 357 ~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (586)
+...|...+.... ..+...|+.|.-. ...|++.-|...|-+-... .+.+..+|..+...+....+++.|...|..
T Consensus 798 ~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 798 DACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHh
Confidence 2345677776655 3566778777655 5567888887777665553 233456788888888899999999999998
Q ss_pred hHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHH---------
Q 007871 434 MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-------PMKPNLALWGTLLLACRNHQNVTLAEV--------- 497 (586)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~--------- 497 (586)
.+. -.|.+...|.....+....|+.-++..+|..- +..|+...|.....-....|++++-+.
T Consensus 876 ~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs 953 (1238)
T KOG1127|consen 876 VQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSAS 953 (1238)
T ss_pred hhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhH
Confidence 877 44556677766666667788888888887642 223555555544444555665555444
Q ss_pred -HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 498 -VVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 498 -~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
.+++.....|+...+|...+..+-+.+.+.+|.++..+..
T Consensus 954 ~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 954 LALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4445555679999999999999999999999988877753
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.86 E-value=3.4e-07 Score=79.78 Aligned_cols=149 Identities=9% Similarity=0.097 Sum_probs=114.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCC
Q 007871 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459 (586)
Q Consensus 380 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (586)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ ..+.+...|..++..|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 4457788888776554433221 11 012235667778878887777 457788999999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 007871 460 LEQALNIVESM-PMKP-NLALWGTLLLA-CRNHQN--VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534 (586)
Q Consensus 460 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 534 (586)
+++|...+++. ...| +...+..+..+ +...|+ .++|..+++++.+.+|+++.++..++..+.+.|++++|+..++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999887 3445 67777777776 466677 5999999999999999999999999999999999999999999
Q ss_pred HHHhCCCc
Q 007871 535 MMRKRKIK 542 (586)
Q Consensus 535 ~m~~~~~~ 542 (586)
++.+....
T Consensus 169 ~aL~l~~~ 176 (198)
T PRK10370 169 KVLDLNSP 176 (198)
T ss_pred HHHhhCCC
Confidence 99875443
No 104
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.83 E-value=9.8e-06 Score=72.65 Aligned_cols=301 Identities=9% Similarity=0.005 Sum_probs=166.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHH---HHHHhCCChhHHHHHHhhCC--CCChhHHHHHHHHHhh
Q 007871 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL---RGFVECGEMGKAREVFDEMP--QKDAISWSIMIDGYRK 221 (586)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~ 221 (586)
+.-.-.|...+...|.+..|+.-|....+.|+..|.++. ..|...|+...|+.-+++.. +||-.....--.....
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 334445666677778888888888877777777666654 35777777777777777766 5664433332222225
Q ss_pred ccCCHHHHHHHHHhCCCCCh------hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHH
Q 007871 222 KKGDISSARILFEHMPIKDL------ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295 (586)
Q Consensus 222 ~~g~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 295 (586)
+.|.++.|..-|+.....++ .++..++- .++- ......+..+...|+...|+...
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~-------~~e~------------~~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLAL-------IQEH------------WVLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHh-------HHHH------------HHHHHHHHHHhcCCchhhHHHHH
Confidence 66777777777666553211 01110000 0000 00011122333445555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCH
Q 007871 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--KNV 373 (586)
Q Consensus 296 ~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~ 373 (586)
..+++. .+.|...+..-..+|...|.+..|..-++...+.. ..++..+-.+-..+...|+.+.++...++..+ ||-
T Consensus 179 ~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 179 THLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred HHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch
Confidence 554443 13444444444445555555555544444443332 12223333334444444555554444444332 211
Q ss_pred h----HHHHH---------HHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHhhccCCHHHHHHHHHHhHHh
Q 007871 374 I----SYNVM---------IAGLGMNGFGEEALKCFAQMETEGIPKDDL---IFLGVLIACSHSGLATEGYRIFQSMKRH 437 (586)
Q Consensus 374 ~----~~~~l---------~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 437 (586)
. .|-.+ +......+++.++++-.+...+........ .+..+-.++...|++.+|++.-.++..
T Consensus 257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~- 335 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD- 335 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh-
Confidence 1 11110 122345678888888888777743221222 344455567788999999999888877
Q ss_pred hCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 438 CGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 438 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
-.+.|+.++---..+|.-..++++|+.-|+..
T Consensus 336 -~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 336 -IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred -cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34456888888899999999999999999887
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.80 E-value=1.6e-05 Score=77.66 Aligned_cols=20 Identities=10% Similarity=-0.067 Sum_probs=13.7
Q ss_pred HHhcCChHHHHHHHHHHHhc
Q 007871 486 CRNHQNVTLAEVVVEGLVEL 505 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~ 505 (586)
+...|++++|.+.+..+...
T Consensus 317 ~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 317 AFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55677777777777776653
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=3.9e-06 Score=73.60 Aligned_cols=282 Identities=12% Similarity=0.001 Sum_probs=190.7
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHH-HHHHHH
Q 007871 80 HNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNG-LIGMYS 158 (586)
Q Consensus 80 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~ 158 (586)
+.+.+.-+.+..++..|++++..-.++.. -+....+.+..+|....++..|-..++++-... |...-|.. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 56677777888999999999998887742 266677888888899999999999999988743 55554442 245566
Q ss_pred hcCChhHHHHHhccCCCCChhhHHHH--H--HHHHhCCChhHHHHHHhhCC-CCChhHHHHHHHHHhhccCCHHHHHHHH
Q 007871 159 KCGHMGCARSVFEGSEIKDLVSWNLV--L--RGFVECGEMGKAREVFDEMP-QKDAISWSIMIDGYRKKKGDISSARILF 233 (586)
Q Consensus 159 ~~g~~~~a~~~~~~~~~~~~~~~~~l--~--~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~ll~~~~~~~g~~~~a~~~~ 233 (586)
+.+.+..|+.+...|...+ ...+.. + ......+++..+..++++.. ..+..+.+...-.. .+.|+++.|.+-|
T Consensus 90 ~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCll-ykegqyEaAvqkF 167 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLL-YKEGQYEAAVQKF 167 (459)
T ss_pred HhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchhee-eccccHHHHHHHH
Confidence 7888999999988887642 122221 2 23346788999999999887 34444444333333 7899999999999
Q ss_pred HhCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----------------CCh---------------hHHHH
Q 007871 234 EHMPIK----DLISWNSMIDGYAKIGDLVAAQQLFNEMPE-----------------RNV---------------FSWSI 277 (586)
Q Consensus 234 ~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------------~~~---------------~~~~~ 277 (586)
.....- ....|+.- -+..+.|+++.|++...++.+ +|+ .++|.
T Consensus 168 qaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 887643 33455544 455678899999999888753 121 12333
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 007871 278 MIDGYAQHGNPKEALYLFREMLCQ-GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356 (586)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 356 (586)
-...+.+.++++.|.+.+-+|-.+ ....|++|...+.-. ...+++.....-+..+...+ +....+|..++-.||+..
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhH
Confidence 333456778888888887777422 224466676554432 23344555555555555554 355678888888888888
Q ss_pred CHHHHHHHHhccC
Q 007871 357 SLDEARRIFYSMT 369 (586)
Q Consensus 357 ~~~~a~~~~~~~~ 369 (586)
-++-|-.++.+-.
T Consensus 325 yf~lAADvLAEn~ 337 (459)
T KOG4340|consen 325 YFDLAADVLAENA 337 (459)
T ss_pred HHhHHHHHHhhCc
Confidence 8888888876544
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=4.1e-07 Score=87.06 Aligned_cols=249 Identities=11% Similarity=0.022 Sum_probs=185.8
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 007871 280 DGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359 (586)
Q Consensus 280 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 359 (586)
.-+.+.|+..+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+.. +.+......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 44678888999999999988874 5567788888888888888889999999988886 446677888888899999988
Q ss_pred HHHHHHhccCCCCH-hHHHHHH---------HHHHhcCChHHHHHHHHHH-HHCCCCCCHHHHHHHHHHhhccCCHHHHH
Q 007871 360 EARRIFYSMTKKNV-ISYNVMI---------AGLGMNGFGEEALKCFAQM-ETEGIPKDDLIFLGVLIACSHSGLATEGY 428 (586)
Q Consensus 360 ~a~~~~~~~~~~~~-~~~~~l~---------~~~~~~~~~~~A~~~~~~m-~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 428 (586)
+|.+.++.-..... ..|.... ..+..........++|-++ ...+..+|+.....|.-.|.-.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 99988876531100 0000000 1111112233444454444 45555688888888888899999999999
Q ss_pred HHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007871 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVELK 506 (586)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 506 (586)
..|+.+.. --|-|..+||.|+-.++...+.++|+..|.++ ..+|. +.....|..+|...|.|++|...|-.++.+.
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999988 34557899999999999999999999999988 56775 5677888999999999999999999998865
Q ss_pred CC-----C-----cchHHHHHHHHHhcCCchHHHHH
Q 007871 507 AD-----D-----CGLYVLLSNIYADAGMWEHALRI 532 (586)
Q Consensus 507 p~-----~-----~~~~~~l~~~~~~~g~~~~A~~~ 532 (586)
+. . ..+|..|=.++.-.++.+-+.+.
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 43 1 24677777777777777755443
No 108
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.75 E-value=3.2e-07 Score=75.49 Aligned_cols=121 Identities=10% Similarity=-0.012 Sum_probs=77.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 007871 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PM 472 (586)
Q Consensus 394 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 472 (586)
.++++..+ ..|+. +..+..++...|++++|...|+.+.. --+.+...+..++.++...|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444 33432 44455566667777777777777666 34446666777777777777777777777666 22
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 473 KP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 473 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
.| +...+..+..++...|++++|+..|+++++..|+++..+...+.+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 33 5666666666777777777777777777777777777776665544
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.74 E-value=1.6e-06 Score=91.03 Aligned_cols=203 Identities=14% Similarity=0.148 Sum_probs=157.9
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 007871 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK--------NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410 (586)
Q Consensus 339 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 410 (586)
+.+...|-..|......++.++|+++.++..+. -...|.++++.-...|.-+...++|+++.+ +--....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHH
Confidence 344556777777788888888888888877631 234677777777777877888888888887 3333456
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 007871 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM----PMKPNLALWGTLLLAC 486 (586)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~ 486 (586)
|..|...|.+.+.+++|.++++.|.++++ -....|..++..+.+..+-+.|.+++.++ +.+.......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78888888888999999999999988554 66678888888888888888888888776 2223455555556666
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCC
Q 007871 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545 (586)
Q Consensus 487 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 545 (586)
.+.||.+++..+|+..+...|.....|+.+++.-.+.|+.+.++.+|++....++.+..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 78899999999999999988998999999999999999999999999999888877654
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.73 E-value=8.1e-07 Score=73.15 Aligned_cols=107 Identities=12% Similarity=-0.046 Sum_probs=91.6
Q ss_pred HHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007871 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506 (586)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 506 (586)
.++++..+ ..|+ .+..++..+...|++++|...|+.. ...| +...+..+..++...|++++|+..|+++.+.+
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34555544 2343 4566788999999999999999987 3444 78888999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 507 ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 507 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
|.++..+..++.++...|++++|...+++..+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999997743
No 111
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.66 E-value=0.00032 Score=67.22 Aligned_cols=130 Identities=11% Similarity=0.118 Sum_probs=82.1
Q ss_pred CCChhhHhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHH
Q 007871 41 ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF 117 (586)
Q Consensus 41 ~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ 117 (586)
+-|...|..+++ .... ...+++++.++++ .+-....|..-|..-.+..+++....+|.+.+.. ..+...|..
T Consensus 17 P~di~sw~~lir--e~qt-~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIR--EAQT-QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKL 91 (656)
T ss_pred CccHHHHHHHHH--HHcc-CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHH
Confidence 678888999998 5555 5899999999988 3345667888899889999999999999988776 345666666
Q ss_pred HHHHHhc-cCCchHHH----HHHHH-HHHhCCCCc-hhHHHHHHHHH---------HhcCChhHHHHHhccCCC
Q 007871 118 VLKACGV-LMGLVEGT----EIHGE-VVKMGFLCD-VFVVNGLIGMY---------SKCGHMGCARSVFEGSEI 175 (586)
Q Consensus 118 ll~~~~~-~~~~~~a~----~~~~~-~~~~~~~~~-~~~~~~li~~~---------~~~g~~~~a~~~~~~~~~ 175 (586)
-|..-.+ .+.....+ +-|+. +.+.|+.+- -..|+..+..+ ....+++..+++++++..
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 6654332 23333322 22332 234454432 23455444332 333455666777776653
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.65 E-value=4.7e-06 Score=72.28 Aligned_cols=154 Identities=16% Similarity=0.144 Sum_probs=111.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh
Q 007871 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456 (586)
Q Consensus 377 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 456 (586)
..+-..+...|+.+....+....... .+.+.......+....+.|++..|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 45556666677777777766664441 233444555577777778888888888888777 667778888888888888
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 007871 457 AGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 457 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 533 (586)
.|++++|..-|.+. ...| ++...+.+...+.-.||.+.|+.++..+....+.+..+-..++.+....|++++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 88888887777665 3333 56667777777777888888888888887777778888888888888888888777654
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.64 E-value=3.6e-06 Score=87.03 Aligned_cols=171 Identities=11% Similarity=0.007 Sum_probs=128.0
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHH
Q 007871 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449 (586)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 449 (586)
.++..+..|.....+.|++++|..+|+...+ +.|+. .....+..++.+.+++++|+...++... .-+.+......
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 3577888888888889999999999998888 67766 4677777888888999999998888887 55667778888
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 007871 450 LVDLLSRAGELEQALNIVESMP-MKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWE 527 (586)
Q Consensus 450 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 527 (586)
+..++...|++++|..+|++.- ..| +...+..+..++...|+.++|...|+++.+...+-...|..++ ++..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHH
Confidence 8888889999999999998873 334 4677888888888889999999999998887655444444433 2334
Q ss_pred HHHHHHHHHHhCCCccCCCeeEEE
Q 007871 528 HALRIRKMMRKRKIKKETGRSVIE 551 (586)
Q Consensus 528 ~A~~~~~~m~~~~~~~~~~~~~~~ 551 (586)
.-...++++.-.++..+..+..+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~ 257 (694)
T PRK15179 234 ADLAALRRLGVEGDGRDVPVSILV 257 (694)
T ss_pred HHHHHHHHcCcccccCCCceeeee
Confidence 455677777666655554444433
No 114
>PLN02789 farnesyltranstransferase
Probab=98.61 E-value=1.4e-05 Score=74.96 Aligned_cols=155 Identities=9% Similarity=0.006 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc---CCH----HH
Q 007871 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA---GEL----EQ 462 (586)
Q Consensus 390 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~ 462 (586)
++++.+++++.+.. +-|..+|....-++...|+++++++.++++++ ..+.+...|+....++.+. |.. ++
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE--EDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 45566666666531 22445666666666666777777777777776 2344555666555554443 222 35
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC------------
Q 007871 463 ALNIVESM-PMKP-NLALWGTLLLACRNH----QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG------------ 524 (586)
Q Consensus 463 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------ 524 (586)
++++..++ ...| +...|+.+...+... +...+|...+.++.+.+|.++.+...|+++|+...
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 55555333 4444 567777777777663 34566888888888888999999999999988643
Q ss_pred ------CchHHHHHHHHHHhCCCccCCCeeE
Q 007871 525 ------MWEHALRIRKMMRKRKIKKETGRSV 549 (586)
Q Consensus 525 ------~~~~A~~~~~~m~~~~~~~~~~~~~ 549 (586)
..++|..+++.+. ...|-...||
T Consensus 282 ~~~~~~~~~~a~~~~~~l~--~~d~ir~~yw 310 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELE--VADPMRRNYW 310 (320)
T ss_pred cccccccHHHHHHHHHHHH--hhCcHHHHHH
Confidence 2366888888873 3333333343
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.61 E-value=2.5e-06 Score=84.04 Aligned_cols=216 Identities=12% Similarity=0.041 Sum_probs=165.9
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC--CCCHhHHHHHHHHHHhc
Q 007871 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT--KKNVISYNVMIAGLGMN 386 (586)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~ 386 (586)
.=..+...+...|-...|..+++++. .+..++.+|+..|+..+|..+..... +|++..|..+.......
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccCh
Confidence 33445566677777778888877543 45567888888888888888776554 46777788777777666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 007871 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466 (586)
Q Consensus 387 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 466 (586)
.-+++|.++.+..-.. .-..+.......++++++.+.|+.-.+ -.+.-..+|-.++-+..+.++++.|.+.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 6677777777653321 111122223346889999999888777 3445678888899999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 467 VESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 467 ~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
|... ...| +...|+.+..+|.+.++-.+|...+.++.+.+-.+..+|.+..-+..+-|.+++|.+.+.++.+....
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 9876 4455 67899999999999999999999999999999999999999999999999999999999998766543
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.61 E-value=4e-06 Score=72.69 Aligned_cols=136 Identities=15% Similarity=0.062 Sum_probs=116.8
Q ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 007871 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM--PMKPNLALWGT 481 (586)
Q Consensus 404 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 481 (586)
..|+......+-..+...|+-+....+...... ..+.+......+++...+.|++.+|+..+.+. ..++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 355443336667778888888888888887655 45667777888999999999999999999998 45578999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 541 (586)
+..+|-+.|+++.|...|.++.++.|+++.+.+.++..|.-.|+++.|..++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999876554
No 117
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=4.7e-06 Score=71.57 Aligned_cols=82 Identities=18% Similarity=0.264 Sum_probs=37.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 007871 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465 (586)
Q Consensus 386 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 465 (586)
.|++++|+++|+.+.+.. +.|..++..=+...-..|+.-+|++-+....+ .+..|.+.|..+...|...|++++|.-
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 444455555555544432 22223333333333344444444444444444 344445555555555555555555555
Q ss_pred HHHhC
Q 007871 466 IVESM 470 (586)
Q Consensus 466 ~~~~~ 470 (586)
.++++
T Consensus 176 ClEE~ 180 (289)
T KOG3060|consen 176 CLEEL 180 (289)
T ss_pred HHHHH
Confidence 55444
No 118
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=8.4e-05 Score=64.63 Aligned_cols=173 Identities=14% Similarity=0.087 Sum_probs=98.3
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 007871 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410 (586)
Q Consensus 331 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 410 (586)
+.+.......+......-...|+..|++++|++...... +....-.=+..+.+..+.+-|.+.+++|.+ --+..|
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ided~t 171 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ---IDEDAT 171 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHHH
Confidence 333333333333333334455666777777777766532 222222223445566667777777777765 224456
Q ss_pred HHHHHHHhhc----cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 007871 411 FLGVLIACSH----SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM--PMKPNLALWGTLLL 484 (586)
Q Consensus 411 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~ 484 (586)
.+.|..++.+ .+.+.+|.-+|+++.. ..+|+..+.+..+.+....|++++|..+++.. +...++.+...++.
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 6656555532 3456677777777766 46677777777777777777777777777666 22335555555555
Q ss_pred HHHhcCC-hHHHHHHHHHHHhcCCCCc
Q 007871 485 ACRNHQN-VTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 485 ~~~~~~~-~~~a~~~~~~~~~~~p~~~ 510 (586)
.-...|. .+-..+.+.++....|.++
T Consensus 250 ~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 250 LALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 4444443 3444556666666666655
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.58 E-value=1.6e-05 Score=83.11 Aligned_cols=254 Identities=9% Similarity=0.052 Sum_probs=159.8
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007871 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPE--RN-VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315 (586)
Q Consensus 239 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 315 (586)
.+...+..|+..+...+++++|.++.+...+ |+ ...|..+...+.+.++.+.+..+ .++.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 3566777788888888888888888776554 33 33444444455666664444433 2233
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHH
Q 007871 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEA 392 (586)
Q Consensus 316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 392 (586)
......++..+..++..+.+.+ .+...+..++.+|-+.|+.++|..+++++.+ .|+.+.|.+...|... +.++|
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 3333334444444444444432 2334666778888888888888888887764 4667777788788777 88888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 007871 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472 (586)
Q Consensus 393 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 472 (586)
.+++.+.... +...+++..+.++|.++.. ..+.+...+..+.+.....- ..
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~------------~~ 219 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHR------------EF 219 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhh------------cc
Confidence 8887776652 4555677788888888877 34444444444443332221 11
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHH-HHhCCCccC
Q 007871 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM-MRKRKIKKE 544 (586)
Q Consensus 473 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-m~~~~~~~~ 544 (586)
.--..++..+-..|...++|+++..+++.+++.+|.|..+...++.+|. +.|.. ...+++ ++..|++..
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~ 289 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNN 289 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccccC
Confidence 2234455566677888889999999999999999999999999998887 44444 333333 233344444
No 120
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.57 E-value=0.00021 Score=79.32 Aligned_cols=397 Identities=12% Similarity=-0.014 Sum_probs=209.0
Q ss_pred chHHHHHHHHHHHcCCC--C-C----hhhHhHHHHHhccCCC---CChHHHHHHHhccCCCCcchHHHHHHHHhcCCCch
Q 007871 25 TTHILQILAQLTTNDLI--T-E----PFTLSQLLMSLTSPNT---LNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQ 94 (586)
Q Consensus 25 ~~~a~~~~~~~~~~~~~--~-~----~~~~~~ll~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 94 (586)
.+++.++++.+...|+. | + .+.|..+++ -+.+.. .+.+....+ +......+...|++.
T Consensus 291 ~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r-~~l~~~l~~~~~~~~~~l-----------h~raa~~~~~~g~~~ 358 (903)
T PRK04841 291 EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFA-SFLRHRCQWELAQELPEL-----------HRAAAEAWLAQGFPS 358 (903)
T ss_pred CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHH-HHHHHHHHhcCchHHHHH-----------HHHHHHHHHHCCCHH
Confidence 44567788888877752 1 1 244566665 232210 122222222 223334455556655
Q ss_pred hHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC
Q 007871 95 KALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174 (586)
Q Consensus 95 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 174 (586)
+|...+....... .-..............|+++.+...+..+.......+..........+...|+++++...+....
T Consensus 359 ~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~ 436 (903)
T PRK04841 359 EAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAE 436 (903)
T ss_pred HHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5554443331110 00011111122233455666655555544221111222233334444556677777666664321
Q ss_pred ----CC----C----hhhHHHHHHHHHhCCChhHHHHHHhhCC--CC--Ch----hHHHHHHHHHhhccCCHHHHHHHHH
Q 007871 175 ----IK----D----LVSWNLVLRGFVECGEMGKAREVFDEMP--QK--DA----ISWSIMIDGYRKKKGDISSARILFE 234 (586)
Q Consensus 175 ----~~----~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~--~~----~~~~~ll~~~~~~~g~~~~a~~~~~ 234 (586)
.. + ......+...+...|++++|...++... .+ +. ...+.+...+ ...|+++.|...++
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~-~~~G~~~~A~~~~~ 515 (903)
T PRK04841 437 QELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH-HCKGELARALAMMQ 515 (903)
T ss_pred HhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 10 0 0111222344556777777777776654 11 11 1122223333 56788888877766
Q ss_pred hCCC-------C--ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CC----hhHHHHHHHHHHhCCCchHHHHH
Q 007871 235 HMPI-------K--DLISWNSMIDGYAKIGDLVAAQQLFNEMPE-------RN----VFSWSIMIDGYAQHGNPKEALYL 294 (586)
Q Consensus 235 ~~~~-------~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~A~~~ 294 (586)
+... + ...+...+...+...|+++.|...+++... ++ ...+..+...+...|++++|...
T Consensus 516 ~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 595 (903)
T PRK04841 516 QTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQC 595 (903)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5541 1 123445566677888888888887776542 11 12344455566777999999888
Q ss_pred HHHHHHCC--CCC--CHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCc--hh--H--HHHHHHHHHhcCCHHHHHHH
Q 007871 295 FREMLCQG--VRP--DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD--MI--V--QTALIDMYMKCGSLDEARRI 364 (586)
Q Consensus 295 ~~~m~~~g--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~--~--~~~l~~~~~~~g~~~~a~~~ 364 (586)
+.+..... ..+ ....+..+.......|+.+.|...+........... .. . ....+..+...|+.+.|...
T Consensus 596 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 675 (903)
T PRK04841 596 ARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANW 675 (903)
T ss_pred HHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHH
Confidence 88876431 112 123344455566788888888888877654311111 10 0 01122444557888888888
Q ss_pred HhccCCCCH-------hHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhhccCCHHHHHHHHH
Q 007871 365 FYSMTKKNV-------ISYNVMIAGLGMNGFGEEALKCFAQMETE----GIPKDD-LIFLGVLIACSHSGLATEGYRIFQ 432 (586)
Q Consensus 365 ~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 432 (586)
+.....+.. ..+..+..++...|++++|...+++.... |..++. .+...+..++...|+.++|...+.
T Consensus 676 l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~ 755 (903)
T PRK04841 676 LRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLL 755 (903)
T ss_pred HHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 766553211 11344566677788888888888876542 222222 355566667778888888888888
Q ss_pred HhHH
Q 007871 433 SMKR 436 (586)
Q Consensus 433 ~~~~ 436 (586)
+...
T Consensus 756 ~Al~ 759 (903)
T PRK04841 756 EALK 759 (903)
T ss_pred HHHH
Confidence 8776
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.56 E-value=1e-05 Score=70.50 Aligned_cols=154 Identities=10% Similarity=0.087 Sum_probs=115.8
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHH
Q 007871 349 IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428 (586)
Q Consensus 349 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 428 (586)
+..|...|+++.+....+.+..+. ..+...++.++++..+++.... -+.+...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777788777655543332221 0122356677888888877774 3556678999999999999999999
Q ss_pred HHHHHhHHhhCCCCChHHHHHHHHHH-hhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007871 429 RIFQSMKRHCGIEPKLEHYSCLVDLL-SRAGE--LEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLV 503 (586)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 503 (586)
..+++..+ -.+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++.
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999988 4456788888888874 67777 59999999988 3445 67788888888999999999999999999
Q ss_pred hcCCCCcchH
Q 007871 504 ELKADDCGLY 513 (586)
Q Consensus 504 ~~~p~~~~~~ 513 (586)
+..|++..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9997766444
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.56 E-value=7.1e-06 Score=66.26 Aligned_cols=120 Identities=12% Similarity=0.044 Sum_probs=98.7
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+....-.+...+...|++++|.++|+-. ...| +..-|..|..+|...|++.+|+..|.++..++|++|..+..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4455556777788999999999999877 3445 6777888888899999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhCCCccCCCeeEEEECCeEeEEecCCCCCCChhHHHHHHHHHHHHHhh
Q 007871 521 ADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585 (586)
Q Consensus 521 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 585 (586)
...|+.+.|++.|+..+...- .+|+-.+|.+.-+...+.+.+
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~-----------------------~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICG-----------------------EVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhc-----------------------cChhHHHHHHHHHHHHHHhhc
Confidence 999999999999998877431 257777777666666555443
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.53 E-value=3.5e-06 Score=69.05 Aligned_cols=97 Identities=22% Similarity=0.244 Sum_probs=66.0
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+......++..+...|++++|.+.++.. ...| +...+..+...+...|++++|...++++.+.+|.++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3344555666666777777777777665 2223 5566666666677777777777777777777777777777777777
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007871 521 ADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 521 ~~~g~~~~A~~~~~~m~~~ 539 (586)
...|++++|...+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777766653
No 124
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.52 E-value=6.7e-06 Score=74.82 Aligned_cols=183 Identities=13% Similarity=0.002 Sum_probs=126.2
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-Hh---H
Q 007871 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM--DMIVQTALIDMYMKCGSLDEARRIFYSMTK--KN-VI---S 375 (586)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~---~ 375 (586)
......+......+...|+++.|...++.+....... ....+..+..++...|++++|...++.+.+ |+ .. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3455677788888999999999999999998765321 124667788999999999999999998863 32 22 4
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHH
Q 007871 376 YNVMIAGLGMN--------GFGEEALKCFAQMETEGIPKDDL-IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446 (586)
Q Consensus 376 ~~~l~~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 446 (586)
+..+..++... |++++|.+.++++... .|+.. ....+..... ..... . ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----------~~~~~-~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----------LRNRL-A--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----------HHHHH-H--------HH
Confidence 55556666554 7889999999999873 55432 2222211100 00000 0 11
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007871 447 YSCLVDLLSRAGELEQALNIVESM----PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 507 (586)
...+...|.+.|++++|...+++. +..| ....+..+..++...|++++|..+++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 235667788899999999888876 2223 356778888889999999999998888776655
No 125
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.50 E-value=6.9e-06 Score=81.03 Aligned_cols=213 Identities=14% Similarity=0.066 Sum_probs=153.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 007871 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356 (586)
Q Consensus 277 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 356 (586)
.+...+.+.|-...|+.++++.. .+..++.+|...|+.++|..+.....+. +|++..|..+.+......
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 45566777788888888887654 4566777888888888888887777663 677888888887777666
Q ss_pred CHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 357 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
-+++|.++.+..... +...+.....+.++++++.+.|+.-.+. .+-...+|..+..+..+.+++..|.+.|.....
T Consensus 472 ~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~-nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEI-NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred HHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhc-CccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 678888887755432 2222233334478888888888876662 122346777777777888888888888888877
Q ss_pred hhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007871 437 HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506 (586)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 506 (586)
+-+.+...||.+..+|.+.|+..+|...+++. + ...+...|...+....+.|.+++|++.+.++..+.
T Consensus 548 --L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 548 --LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred --cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 55667788888888888888888888888877 2 12345566667777778888888888888887753
No 126
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.49 E-value=0.0014 Score=63.10 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=60.7
Q ss_pred CCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCC--ChhhHHHHHH
Q 007871 109 LVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK--DLVSWNLVLR 186 (586)
Q Consensus 109 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~ 186 (586)
+-|..+|..||+-+... -++++++.++++.. -++.....|..-|+.-.+..+++...++|.+...+ +...|...+.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~-~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN-VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhc-cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 44778999999977555 89999999999887 34556778889999999999999999999887654 5666766665
Q ss_pred H
Q 007871 187 G 187 (586)
Q Consensus 187 ~ 187 (586)
-
T Consensus 95 Y 95 (656)
T KOG1914|consen 95 Y 95 (656)
T ss_pred H
Confidence 3
No 127
>PF12854 PPR_1: PPR repeat
Probab=98.48 E-value=1.9e-07 Score=54.45 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=21.7
Q ss_pred CCCCchhHHHHHHHHHHhcCChhHHHHHhccC
Q 007871 142 GFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS 173 (586)
Q Consensus 142 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 173 (586)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
No 128
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.48 E-value=4e-05 Score=81.09 Aligned_cols=230 Identities=13% Similarity=0.080 Sum_probs=139.8
Q ss_pred HHHHHHhhCC-CCCh-hHHHHHHHHHhhccCCHHHHHHHHHhCCCC--------ChhHHHHHHHHHHhcCCHHHHHHHHh
Q 007871 196 KAREVFDEMP-QKDA-ISWSIMIDGYRKKKGDISSARILFEHMPIK--------DLISWNSMIDGYAKIGDLVAAQQLFN 265 (586)
Q Consensus 196 ~A~~~~~~~~-~~~~-~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~ 265 (586)
.|.++-+.+. .||. ..|...|... .+.+++++|.++.++..+. -...|.++++.-..-|.-+...++|+
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~-LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFH-LELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHH-hhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 3333333333 4443 4455555555 6677777777777666532 22456677776666677777777777
Q ss_pred hCCC-CC-hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCC-Cch
Q 007871 266 EMPE-RN-VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRIT-MDM 342 (586)
Q Consensus 266 ~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 342 (586)
+..+ -| ...|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.++.+.-.+ -..
T Consensus 1522 RAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1522 RACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 7765 22 345667777777777777777777777764 2345556666777777777777777777766655222 123
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHH
Q 007871 343 IVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD--LIFLGVLIA 417 (586)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~ 417 (586)
......+..-.+.|+.+.+..+|+.... .....|+..+..-.++|+.+.+..+|++....++.|-. ..|...+..
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 3444455555667777777777776653 24556777777777777777777777777776665543 234444433
Q ss_pred hhccCCHHHH
Q 007871 418 CSHSGLATEG 427 (586)
Q Consensus 418 ~~~~g~~~~A 427 (586)
=-..|+-+.+
T Consensus 1681 Ek~~Gde~~v 1690 (1710)
T KOG1070|consen 1681 EKSHGDEKNV 1690 (1710)
T ss_pred HHhcCchhhH
Confidence 3334444333
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=9.3e-05 Score=63.85 Aligned_cols=171 Identities=14% Similarity=0.103 Sum_probs=110.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 007871 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454 (586)
Q Consensus 376 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (586)
|..++-+....|+.+.|..+++++... + |.. .....-..-+-..|++++|.++++.+.. ..|.|..++..-+-+.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--ddpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE--DDPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc--cCcchhHHHHHHHHHH
Confidence 344444555667777777777777664 3 333 2222222234456777777777777777 3455666666666666
Q ss_pred hhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC---CchHH
Q 007871 455 SRAGELEQALNIVESM--PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG---MWEHA 529 (586)
Q Consensus 455 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A 529 (586)
...|+.-+|++-+... .+..|...|..+...|...|++++|.-.+++++=..|-++..+..+++++.-.| ++.-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6777777777666555 344577777777777777778888877777777777777777777777765554 44567
Q ss_pred HHHHHHHHhCCCccCCCeeEE
Q 007871 530 LRIRKMMRKRKIKKETGRSVI 550 (586)
Q Consensus 530 ~~~~~~m~~~~~~~~~~~~~~ 550 (586)
+.+|++..+...+...+.+.+
T Consensus 211 rkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHHhChHhHHHHHHH
Confidence 777777777665444444433
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.43 E-value=5.7e-05 Score=78.31 Aligned_cols=141 Identities=11% Similarity=0.057 Sum_probs=111.9
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHH
Q 007871 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--K-NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLG 413 (586)
Q Consensus 338 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ 413 (586)
+..++..+..|.....+.|++++|..+++.+.+ | +...+..++..+.+.+++++|+..+++... ..|+. .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 455678888889999999999999999988873 4 456777888889999999999999999888 45554 56677
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 007871 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM--PMKPNLALWGTL 482 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 482 (586)
+..++.+.|++++|..+|+++.. ..+.+..++..+..++...|+.++|...|++. ...|....|+..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 77788889999999999999987 44556788888999999999999999999887 223444444443
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.00013 Score=63.47 Aligned_cols=239 Identities=13% Similarity=0.102 Sum_probs=153.8
Q ss_pred cCCHHHHHHHHHhCC-C-CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHH-HHHHHH
Q 007871 223 KGDISSARILFEHMP-I-KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY-LFREML 299 (586)
Q Consensus 223 ~g~~~~a~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~m~ 299 (586)
.|++..++..-.... . .++..-.-+-++|...|.+.....-...-..+.....-.+......-++.+.-+. +.+.+.
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a 100 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVA 100 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHH
Confidence 556666555543332 2 3444455555667777766554433333333333333333333333444444433 344444
Q ss_pred HCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CHhHHHH
Q 007871 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK-NVISYNV 378 (586)
Q Consensus 300 ~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~ 378 (586)
......+......-...|...+++++|........ +......=+..+.+..+.+-|...++.|.+- +-.+.+.
T Consensus 101 ~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQ 174 (299)
T KOG3081|consen 101 DSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQ 174 (299)
T ss_pred hhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 44333343444444556888999999988876521 2233333445667778899999999999874 4456776
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 007871 379 MIAGLGM----NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454 (586)
Q Consensus 379 l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (586)
|..++.+ .+...+|.-+|++|-+. ..|++.+.+....++...|++++|..+++.... ....++.+...++-+-
T Consensus 175 LA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--kd~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 175 LAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD--KDAKDPETLANLIVLA 251 (299)
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh--ccCCCHHHHHHHHHHH
Confidence 7777654 35688999999999875 789999999999999999999999999999988 4566778888887777
Q ss_pred hhcCCHHHHH-HHHHhC
Q 007871 455 SRAGELEQAL-NIVESM 470 (586)
Q Consensus 455 ~~~g~~~~A~-~~~~~~ 470 (586)
...|...++. +.+.+.
T Consensus 252 ~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 252 LHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHhCCChHHHHHHHHHH
Confidence 7777664443 344444
No 132
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.41 E-value=0.0037 Score=64.00 Aligned_cols=113 Identities=12% Similarity=0.032 Sum_probs=74.4
Q ss_pred cCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHHHHhcCCCchhHHHH
Q 007871 23 KTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIRGYTQSSNPQKALSF 99 (586)
Q Consensus 23 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~A~~~ 99 (586)
+++..|.+-...+.+. .|+......+=.-...+. |+.++|..+++.. ...|..+...+-..|...++.++|..+
T Consensus 23 ~qfkkal~~~~kllkk--~Pn~~~a~vLkaLsl~r~-gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKK--HPNALYAKVLKALSLFRL-GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHh-cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 4566666666666655 344443322211134466 8888888888776 334666777778888888888888888
Q ss_pred HHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHH
Q 007871 100 YVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140 (586)
Q Consensus 100 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 140 (586)
|+..... .|+......++.++.+.+++.+-.+.--++.+
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK 138 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887665 45666666777777787777666555555554
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=5.1e-05 Score=71.85 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=58.1
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHH
Q 007871 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPN-LALWGTLLLACRNHQNVTLAE 496 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~ 496 (586)
...|.+++|+..++.+.+ ..|.|+..+......+...++.++|.+.++++ ...|+ ...+..+..++.+.|+.++|+
T Consensus 317 ~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 344555555555555555 34444444445555555555555555555554 23343 334444445555555555555
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 007871 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 497 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 533 (586)
..++.....+|+++..|..|+++|...|+..+|...+
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 5555555555555555555555555555444444433
No 134
>PLN02789 farnesyltranstransferase
Probab=98.38 E-value=0.00047 Score=64.81 Aligned_cols=235 Identities=12% Similarity=0.010 Sum_probs=135.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC-ChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007871 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV-ISVMGAISACAQVG-ALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352 (586)
Q Consensus 275 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 352 (586)
+..+-..+...++.++|+.+..++++. .|+. ..|..-..++...| +++++...++.+.+...+ +..+|+....++
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 333444455566677777777777764 3333 33444444444445 456777777776665432 333444443334
Q ss_pred HhcCC--HHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc---CC-
Q 007871 353 MKCGS--LDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS---GL- 423 (586)
Q Consensus 353 ~~~g~--~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---g~- 423 (586)
.+.|+ .+++.++++.+.+ .+..+|+...-++...|+++++++.++++++.+ .-|...|+....++.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccc
Confidence 44444 2556666665553 456677777777777788888888888887753 22344555554444333 22
Q ss_pred ---HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC----
Q 007871 424 ---ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA----GELEQALNIVESM-PMKP-NLALWGTLLLACRNHQ---- 490 (586)
Q Consensus 424 ---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~---- 490 (586)
.++...+...++. ..+-|...|+.+...+... ++..+|.+++.+. ...| ++.....|+..|+...
T Consensus 196 ~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~ 273 (320)
T PLN02789 196 EAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTA 273 (320)
T ss_pred cccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccch
Confidence 2456666666666 3455677777777777662 3445677777665 2233 4555666666665422
Q ss_pred --------------ChHHHHHHHHHHHhcCCCCcchHHH
Q 007871 491 --------------NVTLAEVVVEGLVELKADDCGLYVL 515 (586)
Q Consensus 491 --------------~~~~a~~~~~~~~~~~p~~~~~~~~ 515 (586)
..++|..+++.+.+.+|-....|..
T Consensus 274 ~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~ 312 (320)
T PLN02789 274 EFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAW 312 (320)
T ss_pred hhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 3366777777775556655554443
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.37 E-value=9.6e-06 Score=77.51 Aligned_cols=123 Identities=16% Similarity=0.182 Sum_probs=98.5
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACR 487 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 487 (586)
....|+..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++.+. ...| +...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3455566666778888888888888773 244 4445778888888888888888776 3334 6666666777789
Q ss_pred hcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 488 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
+.++++.|+.+.+++.+..|.+...|..|+.+|...|+++.|+..++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999988763
No 136
>PF12854 PPR_1: PPR repeat
Probab=98.35 E-value=8.4e-07 Score=51.72 Aligned_cols=32 Identities=38% Similarity=0.538 Sum_probs=18.5
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007871 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368 (586)
Q Consensus 337 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 368 (586)
|+.||..+|++++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.35 E-value=1.7e-05 Score=64.95 Aligned_cols=116 Identities=9% Similarity=0.031 Sum_probs=89.8
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 007871 395 CFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PM 472 (586)
Q Consensus 395 ~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 472 (586)
.+++... ..|+. .....+...+...|++++|.+.++.+.. ..+.+...+..++.++...|++++|..++++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555 44543 4566667778888999999999988877 34567788888899999999999999988877 33
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHH
Q 007871 473 KP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYV 514 (586)
Q Consensus 473 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 514 (586)
.| +...+..+...+...|++++|...++++.+..|++.....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 34 5677777888889999999999999999999988876443
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=0.00012 Score=69.42 Aligned_cols=146 Identities=16% Similarity=0.043 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (586)
.+.-..-.+...|.+++|+..++.++.. .|+. .-.......+...|+.++|.+.++++.. -.+......-.+..+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~a 383 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHH
Confidence 3333444455677888888888887773 4444 4444555667788888888888888877 233335666677788
Q ss_pred HhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 007871 454 LSRAGELEQALNIVESM--PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531 (586)
Q Consensus 454 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 531 (586)
|.+.|++.+|+.+++.. ..+.|+..|..|..+|...|+..++.... ++.|.-.|++++|..
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~ 446 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAII 446 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHH
Confidence 88888888888888776 23347778888888888888876665543 345677778888877
Q ss_pred HHHHHHhCCC
Q 007871 532 IRKMMRKRKI 541 (586)
Q Consensus 532 ~~~~m~~~~~ 541 (586)
.+....++..
T Consensus 447 ~l~~A~~~~~ 456 (484)
T COG4783 447 FLMRASQQVK 456 (484)
T ss_pred HHHHHHHhcc
Confidence 7777766543
No 139
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.31 E-value=0.0002 Score=75.25 Aligned_cols=150 Identities=8% Similarity=-0.034 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 007871 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353 (586)
Q Consensus 274 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 353 (586)
++..+..+|.+.|+.++|...++++++.. +-|....+.+...++.. ++++|..++..++.. |.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 44445555555555555555555555544 33444455555555544 555555554443332 33
Q ss_pred hcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhccCCHHHHHHHHH
Q 007871 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE-GIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432 (586)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (586)
..+++..+.++|.++...++. +.+.=.++.+.+... |..--..++..+...|...++|+++..+++
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~-------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSD-------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcc-------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 334455555555444432211 111112222222221 111122334444455556666666666666
Q ss_pred HhHHhhCCCCChHHHHHHHHHHh
Q 007871 433 SMKRHCGIEPKLEHYSCLVDLLS 455 (586)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~~ 455 (586)
.+.+ -.+.|......++.+|.
T Consensus 248 ~iL~--~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILE--HDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHh--cCCcchhhHHHHHHHHH
Confidence 6666 23334455555555554
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.31 E-value=0.0063 Score=62.36 Aligned_cols=386 Identities=15% Similarity=0.148 Sum_probs=222.4
Q ss_pred HHhcCChhHHHHHhccCCCCCh-hhHHHHHHH--HHhCCChhHHHHHHhhCC---CCChhHHHHHHHHHhhccCCHHHHH
Q 007871 157 YSKCGHMGCARSVFEGSEIKDL-VSWNLVLRG--FVECGEMGKAREVFDEMP---QKDAISWSIMIDGYRKKKGDISSAR 230 (586)
Q Consensus 157 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~l~~~--~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~g~~~~a~ 230 (586)
....+++..|.+...++..+.+ ..|..++.+ +.+.|+.++|..+++... ..|..|...+-..| ...|+.++|.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y-~d~~~~d~~~ 97 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVY-RDLGKLDEAV 97 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHH-HHHhhhhHHH
Confidence 3456788888888777654322 234444444 468899999998888777 34667777777777 8999999999
Q ss_pred HHHHhCCC--CChhHHHHHHHHHHhcCCHH----HHHHHHhhCCCCChhHHHHHHHHHHh-CCCch---------HHHHH
Q 007871 231 ILFEHMPI--KDLISWNSMIDGYAKIGDLV----AAQQLFNEMPERNVFSWSIMIDGYAQ-HGNPK---------EALYL 294 (586)
Q Consensus 231 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~---------~A~~~ 294 (586)
.+|++... |+......+..+|.+.+++. .|.++++...+.--..|+. ++...+ ...++ .|.+.
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHHH
Confidence 99998874 34555566667777777664 4667777666555555554 333332 22222 34455
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHhccCChhHHHHHHH-HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC
Q 007871 295 FREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHV-FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372 (586)
Q Consensus 295 ~~~m~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 372 (586)
++.+.+.+ -.-+..-...-...+...|+.++|..++. ...+.-..-+...-+.-+..+...++|.+..++-.++...+
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 55555443 22222333333445567788889988883 34444344455555667778888888888777766665321
Q ss_pred HhHHHHHHHHHHh----------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhH
Q 007871 373 VISYNVMIAGLGM----------------NGFGEEALKCFAQMETEGIPKDDL-IFLGVLIACSHSGLATEGYRIFQSMK 435 (586)
Q Consensus 373 ~~~~~~l~~~~~~----------------~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 435 (586)
..-|...+..+.+ .+..+...+..++..... .-++. ...-+..-+..-|+.+++.-.|-+-
T Consensus 257 ~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~-~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k- 334 (932)
T KOG2053|consen 257 NDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK-SRGPYLARLELDKRYKLIGDSEEMLSYYFKK- 334 (932)
T ss_pred CcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc-ccCcHHHHHHHHHHhcccCChHHHHHHHHHH-
Confidence 1113333332111 112222333333332221 11111 1112222233457777765444322
Q ss_pred HhhCCCC----ChHH---------HHHHHHHHhhcCC-HHHHH----------------------------HHHHhC---
Q 007871 436 RHCGIEP----KLEH---------YSCLVDLLSRAGE-LEQAL----------------------------NIVESM--- 470 (586)
Q Consensus 436 ~~~~~~~----~~~~---------~~~l~~~~~~~g~-~~~A~----------------------------~~~~~~--- 470 (586)
+|..| |... ...++..+....+ ...+. .++.+.
T Consensus 335 --fg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ 412 (932)
T KOG2053|consen 335 --FGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLT 412 (932)
T ss_pred --hCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHH
Confidence 34443 2111 2233333332221 11111 111111
Q ss_pred ---C------CCCCH---------HHHHHHHHHHHhcCCh---HHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH
Q 007871 471 ---P------MKPNL---------ALWGTLLLACRNHQNV---TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529 (586)
Q Consensus 471 ---~------~~p~~---------~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 529 (586)
+ .-|+. .+.+.++..+.+.+|. -+|+.+++.....+|.|+.+-..++.+|.-.|-+..|
T Consensus 413 ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a 492 (932)
T KOG2053|consen 413 YEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDA 492 (932)
T ss_pred HhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhH
Confidence 0 01211 1234556667777664 4778888888899999999999999999999999999
Q ss_pred HHHHHHHHhCCCccCCCee
Q 007871 530 LRIRKMMRKRKIKKETGRS 548 (586)
Q Consensus 530 ~~~~~~m~~~~~~~~~~~~ 548 (586)
.++|+.+.-+.|+.+.-.+
T Consensus 493 ~~~y~tLdIK~IQ~DTlgh 511 (932)
T KOG2053|consen 493 YELYKTLDIKNIQTDTLGH 511 (932)
T ss_pred HHHHHhcchHHhhhccchH
Confidence 9999999888888876544
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.30 E-value=2.8e-05 Score=74.34 Aligned_cols=128 Identities=15% Similarity=0.108 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCC
Q 007871 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423 (586)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 423 (586)
....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++.... .+.+...+..-...|...++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 44556677777889999999999998877777777888888889999999999998874 33455666666777889999
Q ss_pred HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 007871 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474 (586)
Q Consensus 424 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 474 (586)
++.|..+.+++.. -.|.+..+|..|+.+|...|++++|+-.++.++.-|
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999988 455567899999999999999999999999886443
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.22 E-value=5.9e-05 Score=62.42 Aligned_cols=113 Identities=13% Similarity=0.061 Sum_probs=64.4
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCC---hHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCh
Q 007871 421 SGLATEGYRIFQSMKRHCGIEPK---LEHYSCLVDLLSRAGELEQALNIVESMP-MKPNL----ALWGTLLLACRNHQNV 492 (586)
Q Consensus 421 ~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~ 492 (586)
.++...+...++.+.++ .+.+ ....-.+...+...|++++|...|+... ..|+. .....+...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 55666666666666663 2222 2333345566666677777766666652 11332 2233345556667777
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 493 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
++|+..++.. ...+..+..+...+++|.+.|++++|+..|+..
T Consensus 102 d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777776552 223444556666777777777777777777653
No 143
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=2.2e-05 Score=69.65 Aligned_cols=106 Identities=18% Similarity=0.055 Sum_probs=77.9
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 007871 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNV 492 (586)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 492 (586)
..-+.+.+++.+|+..|.+.++ -.+-|...|..-..+|.+.|.++.|++-.+.. .+.| ....|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 4455667788888888888877 44556777777788888888888888777665 4555 356788888888888888
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007871 493 TLAEVVVEGLVELKADDCGLYVLLSNIYAD 522 (586)
Q Consensus 493 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 522 (586)
.+|++.|+++++++|++......|-.+-.+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 888888888888888888666666544333
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.13 E-value=3.5e-06 Score=62.17 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=48.0
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH
Q 007871 457 AGELEQALNIVESM-PMKP---NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532 (586)
Q Consensus 457 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 532 (586)
.|++++|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666655 1112 334445566667777777777777776 555666666666667777777777777777
Q ss_pred HHH
Q 007871 533 RKM 535 (586)
Q Consensus 533 ~~~ 535 (586)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 145
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.13 E-value=5.8e-05 Score=72.66 Aligned_cols=105 Identities=11% Similarity=0.040 Sum_probs=82.2
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 007871 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQN 491 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 491 (586)
-...+...|+++.|+..|+++++ ..+.+...|..++.+|...|++++|+..++++ ...| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 34556677889999999988887 34556778888888888889999988888877 3344 56677777888888889
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 492 VTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 492 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+++|+..|+++++++|.++.+...+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999998888888887777665443
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.08 E-value=4.4e-05 Score=57.83 Aligned_cols=93 Identities=24% Similarity=0.239 Sum_probs=74.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 007871 447 YSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 524 (586)
+..++..+...|++++|...+++. ...| +...+..+...+...+++++|...++++.+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677778888888888888776 3334 34566677777888899999999999999988888888889999999999
Q ss_pred CchHHHHHHHHHHhC
Q 007871 525 MWEHALRIRKMMRKR 539 (586)
Q Consensus 525 ~~~~A~~~~~~m~~~ 539 (586)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988887654
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.07 E-value=7.6e-05 Score=59.46 Aligned_cols=93 Identities=17% Similarity=0.066 Sum_probs=47.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---cchHHHHHH
Q 007871 447 YSCLVDLLSRAGELEQALNIVESMP-MKPN----LALWGTLLLACRNHQNVTLAEVVVEGLVELKADD---CGLYVLLSN 518 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 518 (586)
+..++..+.+.|++++|.+.++.+. ..|+ ...+..+..++...|+++.|...++.+....|.+ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3344445555555555555554441 1121 2233444455555555666666666555555443 334555555
Q ss_pred HHHhcCCchHHHHHHHHHHhC
Q 007871 519 IYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 519 ~~~~~g~~~~A~~~~~~m~~~ 539 (586)
++.+.|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 566666666666666555544
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.07 E-value=0.00039 Score=57.47 Aligned_cols=124 Identities=16% Similarity=0.138 Sum_probs=82.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC--hHHHHHH
Q 007871 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD---LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK--LEHYSCL 450 (586)
Q Consensus 376 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l 450 (586)
|..++..+ ..++...+...++.+.... +.+. .....+...+...|++++|...|+.+... ...|+ ......+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 33444444 4777788888888887742 2221 23444556677888888888888888873 32222 2344557
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007871 451 VDLLSRAGELEQALNIVESMPMKP-NLALWGTLLLACRNHQNVTLAEVVVEGL 502 (586)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 502 (586)
..++...|++++|+..++.....+ .+..+......+...|++++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 788888888888888887764332 4455566666788888888888888765
No 149
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.06 E-value=1.2e-05 Score=56.66 Aligned_cols=65 Identities=22% Similarity=0.187 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC-CchHHHHHHHHHHhC
Q 007871 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG-MWEHALRIRKMMRKR 539 (586)
Q Consensus 475 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 539 (586)
++..|..+...+...|++++|+..|+++++.+|.++.++..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46778888889999999999999999999999999999999999999999 799999999988653
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.04 E-value=7.9e-05 Score=59.36 Aligned_cols=106 Identities=8% Similarity=0.061 Sum_probs=70.5
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhhCC-CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGI-EPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPN----LALWGTLL 483 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 483 (586)
++..++..+...|++++|...+..+.....- +.....+..++.++.+.|++++|...++.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455566666777777777777777663111 111345566777777888888888877766 22222 45566667
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCcchHHH
Q 007871 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515 (586)
Q Consensus 484 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 515 (586)
.++...|++++|...++++.+..|+++.....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 77788888888888888888888887765443
No 151
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.03 E-value=1.5e-05 Score=55.34 Aligned_cols=58 Identities=19% Similarity=0.171 Sum_probs=51.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+...+...|++++|+..|+++++..|.++.++..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556888999999999999999999999999999999999999999999999998764
No 152
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.02 E-value=8.6e-06 Score=48.31 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=26.1
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCc
Q 007871 79 MHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDN 112 (586)
Q Consensus 79 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~ 112 (586)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6777777787778788888888877777777763
No 153
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.01 E-value=1.7e-05 Score=55.79 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=45.8
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 487 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
...|++++|+..|+++.+.+|.++.++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999887653
No 154
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.00078 Score=62.52 Aligned_cols=154 Identities=14% Similarity=0.055 Sum_probs=111.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHH-------------
Q 007871 381 AGLGMNGFGEEALKCFAQMETEGIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH------------- 446 (586)
Q Consensus 381 ~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------- 446 (586)
..+.-.|++++|...--...+. .++ ......-..++...++.+.|...|++... ..|+...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 3456678888888776666552 222 22222222244556788888888887755 3343221
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 447 YSCLVDLLSRAGELEQALNIVESM-PM-----KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+..=++-..+.|++..|.+.|.+. .+ +|+...|.....+..+.|+..+|+.-.+.+.+++|.-...+..-+.++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 112234456889999999999877 33 355667777777788999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007871 521 ADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 521 ~~~g~~~~A~~~~~~m~~~ 539 (586)
...++|++|.+.+++..+.
T Consensus 332 l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998663
No 155
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.00 E-value=9.3e-06 Score=47.76 Aligned_cols=33 Identities=24% Similarity=0.498 Sum_probs=23.5
Q ss_pred chHHHHHHHHhcCCCchhHHHHHHHhHhCCCCC
Q 007871 78 YMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV 110 (586)
Q Consensus 78 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~ 110 (586)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 156
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.97 E-value=8.3e-05 Score=66.06 Aligned_cols=156 Identities=13% Similarity=0.037 Sum_probs=105.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC
Q 007871 380 IAGLGMNGFGEEALKCFAQMETEGIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458 (586)
Q Consensus 380 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (586)
..-+.+.+++.+|+..|.+.++ +.|+ .+-|..-..+|++.|.++.|++-.+..+. -.+....+|..|..+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccC
Confidence 3457788999999999999999 5664 56677788899999999999998888877 33445789999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCChH---HHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCCchHHHH
Q 007871 459 ELEQALNIVESM-PMKPNLALWGTLLLA-CRNHQNVT---LAEVVVEGLVELK--ADDCGLYVLLSNIYADAGMWEHALR 531 (586)
Q Consensus 459 ~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~~~~~~~---~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~ 531 (586)
++++|++.|++. .+.|+-.+|..=+.. -.+.+... .+...++....++ |+....++ ...-.......
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~------~~l~nnp~l~~ 237 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFN------GDLMNNPQLMQ 237 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhhc------cccccCHHHHH
Confidence 999999999887 677877666544433 33333332 3333333333333 33333332 23334445555
Q ss_pred HHHHHHhCCCccCC
Q 007871 532 IRKMMRKRKIKKET 545 (586)
Q Consensus 532 ~~~~m~~~~~~~~~ 545 (586)
....|...|....+
T Consensus 238 ~~~~m~~~~~~~~~ 251 (304)
T KOG0553|consen 238 LASQMMKDGALNGP 251 (304)
T ss_pred HHHHHhhcccccCc
Confidence 66666664433333
No 157
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.92 E-value=1.9e-05 Score=46.78 Aligned_cols=33 Identities=45% Similarity=0.649 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 407 (586)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888886
No 158
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.91 E-value=2.1e-05 Score=46.21 Aligned_cols=33 Identities=39% Similarity=0.728 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 007871 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305 (586)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~ 305 (586)
.+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 477888888888888888888888888887776
No 159
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00041 Score=62.18 Aligned_cols=107 Identities=15% Similarity=0.071 Sum_probs=89.2
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHH-hc--CChHHHHHHHHHHHhcCCCCcchHH
Q 007871 440 IEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMK-PNLALWGTLLLACR-NH--QNVTLAEVVVEGLVELKADDCGLYV 514 (586)
Q Consensus 440 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~-~~--~~~~~a~~~~~~~~~~~p~~~~~~~ 514 (586)
.+-|...|..|+.+|...|+.+.|..-|.+. ... +++..+..+..++. .. ....++..++++++..+|.|+....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 4568899999999999999999999999887 333 46777777776633 22 3567899999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhCCCccCCC
Q 007871 515 LLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546 (586)
Q Consensus 515 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 546 (586)
.|+..+...|++.+|...++.|.+.....++.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 99999999999999999999999976665443
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.88 E-value=0.00027 Score=68.04 Aligned_cols=102 Identities=13% Similarity=-0.007 Sum_probs=82.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC
Q 007871 379 MIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458 (586)
Q Consensus 379 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (586)
....+...|++++|+..|++.+... +.+...+..+..+|...|++++|+..++++.. -.+.+...|..++.+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 3556778899999999999999842 33557888888899999999999999999988 34557888999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHH
Q 007871 459 ELEQALNIVESM-PMKPNLALWGTLL 483 (586)
Q Consensus 459 ~~~~A~~~~~~~-~~~p~~~~~~~l~ 483 (586)
++++|...|++. ...|+.......+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999887 4556544444443
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.83 E-value=0.00026 Score=60.59 Aligned_cols=81 Identities=15% Similarity=0.053 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 007871 445 EHYSCLVDLLSRAGELEQALNIVESM-PMKPN----LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519 (586)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 519 (586)
..+..++..+...|++++|...+++. ...|+ ...+..+...+...|++++|+..++++.+..|.++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555666666667777777766655 11121 34566666777788888888888888888888888888788888
Q ss_pred HHhcCC
Q 007871 520 YADAGM 525 (586)
Q Consensus 520 ~~~~g~ 525 (586)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 777766
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.78 E-value=0.00032 Score=52.96 Aligned_cols=90 Identities=20% Similarity=0.137 Sum_probs=41.3
Q ss_pred HHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 007871 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVT 493 (586)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 493 (586)
..+...|++++|..+++.+.+ ..+.+...+..++.++...|++++|.+.++.. ...| +...+..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 333444444445444444443 12222334444445555555555555555443 1112 2234444445555555555
Q ss_pred HHHHHHHHHHhcCC
Q 007871 494 LAEVVVEGLVELKA 507 (586)
Q Consensus 494 ~a~~~~~~~~~~~p 507 (586)
.|...++++.+..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 55555555554443
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.77 E-value=0.00093 Score=57.16 Aligned_cols=131 Identities=11% Similarity=0.097 Sum_probs=90.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHH
Q 007871 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD--DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449 (586)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 449 (586)
....+..+...+...|++++|...|++....+..+. ...+..+..++.+.|++++|...+++... ..+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHH
Confidence 344566777778888888888888888876432222 35677788888888999999999888877 33445667777
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 007871 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM 525 (586)
Q Consensus 450 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 525 (586)
++.+|...|+...+..-++.. ...+++|...++++.+.+|++ +..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 788888877766655433321 123677888888888888876 4455555544443
No 164
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.76 E-value=9.9e-05 Score=52.67 Aligned_cols=58 Identities=21% Similarity=0.160 Sum_probs=52.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007871 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 484 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 541 (586)
..|...+++++|..+++++++.+|.++..+...+.++.+.|++++|.+.++...+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4578899999999999999999999999999999999999999999999999986544
No 165
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.73 E-value=0.063 Score=53.73 Aligned_cols=231 Identities=14% Similarity=0.021 Sum_probs=142.9
Q ss_pred CCchhHHHHHHHHHHhcCChhHHHHHhccCCC-CCh------------hhHHHHHHHHHhCCChhHHHHHHhhCCCCChh
Q 007871 144 LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI-KDL------------VSWNLVLRGFVECGEMGKAREVFDEMPQKDAI 210 (586)
Q Consensus 144 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 210 (586)
.|.+..|..|.......-+++.|...|-+... +.+ ..-.+ ..-+--|++++|.++|-.+...|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~a--ei~~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRA--EISAFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhH--hHhhhhcchhHhhhhhhccchhhh-
Confidence 47788888888887777777888777755432 111 11111 122335899999999988865543
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHhCCCC-----ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhC
Q 007871 211 SWSIMIDGYRKKKGDISSARILFEHMPIK-----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285 (586)
Q Consensus 211 ~~~~ll~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 285 (586)
.+... .+.|++-...++++..... -..+++.+...+.....+++|.+.|...... ...+.++...
T Consensus 766 ----Aielr-~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~~ecly~l 835 (1189)
T KOG2041|consen 766 ----AIELR-KKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQIECLYRL 835 (1189)
T ss_pred ----hHHHH-HhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhHHHHHHHH
Confidence 23444 6788888888888876533 2356888888888888888888887765431 1234455555
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 007871 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365 (586)
Q Consensus 286 ~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 365 (586)
.++++-..+... ++.+....-.+..++...|.-++|.+.|-+. + .| ...+..+...++|.+|.++-
T Consensus 836 e~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 836 ELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred HhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHH
Confidence 555544333322 3555666667777888888888777665432 1 11 23455666777888888887
Q ss_pred hccCCCCHhHHHH--------------HHHHHHhcCChHHHHHHHHHHHH
Q 007871 366 YSMTKKNVISYNV--------------MIAGLGMNGFGEEALKCFAQMET 401 (586)
Q Consensus 366 ~~~~~~~~~~~~~--------------l~~~~~~~~~~~~A~~~~~~m~~ 401 (586)
+...-|.+.+.-+ -|..+.+.|+.-.|.+++.+|.+
T Consensus 902 q~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 902 QRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 7666554433211 12334455566566666666643
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.72 E-value=0.00011 Score=54.10 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=35.1
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHH
Q 007871 386 NGFGEEALKCFAQMETEGIP-KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL 464 (586)
Q Consensus 386 ~~~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 464 (586)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+. + +.+......++.++...|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-~-~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-D-PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-H-HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-C-CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34555555555555552110 1223333345555555555555555555 110 1 112233333455555555555555
Q ss_pred HHHH
Q 007871 465 NIVE 468 (586)
Q Consensus 465 ~~~~ 468 (586)
++++
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.72 E-value=0.00042 Score=59.10 Aligned_cols=94 Identities=14% Similarity=-0.099 Sum_probs=73.0
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PMKPN----LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
....+..++..+...|++++|+..+++. ...|+ ..++..+...+...|++++|+..++++.+..|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3456677777788888888888888776 22222 346778888899999999999999999999999888888888
Q ss_pred HHHH-------hcCCchHHHHHHHHH
Q 007871 518 NIYA-------DAGMWEHALRIRKMM 536 (586)
Q Consensus 518 ~~~~-------~~g~~~~A~~~~~~m 536 (586)
.++. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888666666554
No 168
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.70 E-value=0.0041 Score=51.27 Aligned_cols=134 Identities=12% Similarity=-0.023 Sum_probs=95.0
Q ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC---CHHHH
Q 007871 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP-MKP---NLALW 479 (586)
Q Consensus 404 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~ 479 (586)
..|+...-..|..++.+.|++.+|...|++... .-+..|......+.++....+++..|...++... ..| ++...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 456666666777788888888888888888877 2344567777778888888888888888887762 112 23344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 480 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
..+...+...|.+..|+..|+.+..-.|. +......+..+.++|+.++|..-+..+.+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 45667788888888888888888876554 445555666788888888877666655543
No 169
>PRK15331 chaperone protein SicA; Provisional
Probab=97.69 E-value=0.003 Score=51.56 Aligned_cols=90 Identities=11% Similarity=-0.027 Sum_probs=76.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 007871 449 CLVDLLSRAGELEQALNIVESMP--MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMW 526 (586)
Q Consensus 449 ~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 526 (586)
....-+...|++++|..+|.-+. ..-+..-|..|..++...+++++|+..|..+..++++||......+.+|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 34455568899999999988762 2336777778888888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 007871 527 EHALRIRKMMRK 538 (586)
Q Consensus 527 ~~A~~~~~~m~~ 538 (586)
+.|+..|+....
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999988866
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.67 E-value=0.0023 Score=64.54 Aligned_cols=139 Identities=9% Similarity=-0.030 Sum_probs=65.3
Q ss_pred CCCHhHHHHHHHHHH--hcC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcc--------CCHHHHHHHHHHhH
Q 007871 370 KKNVISYNVMIAGLG--MNG---FGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHS--------GLATEGYRIFQSMK 435 (586)
Q Consensus 370 ~~~~~~~~~l~~~~~--~~~---~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~--------g~~~~A~~~~~~~~ 435 (586)
..+...|...+.+.. ..+ ....|..+|++..+ ..|+. ..+..+..++... ++...+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 346667777666633 222 35678888888877 56664 3333333222111 01122222222221
Q ss_pred HhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 436 RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 436 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
.....+.+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...++++..++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 10012223344444444444455555555555544 2334444455555555555555555555555555555544
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.65 E-value=0.00016 Score=50.13 Aligned_cols=61 Identities=23% Similarity=0.254 Sum_probs=46.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 450 LVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 450 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
++..+...|++++|...|+++ ...| +...+..+..++...|++++|..+|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456777888888888888877 3345 566777777788888888888888888888888775
No 172
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.62 E-value=0.00057 Score=63.25 Aligned_cols=131 Identities=11% Similarity=0.000 Sum_probs=92.4
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHh---HHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCC-CCH
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSM---KRHCGIEP-KLEHYSCLVDLLSRAGELEQALNIVESM-------PMK-PNL 476 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~-p~~ 476 (586)
..|..|.+.|.-.|+++.|+...+.- .+++|... ....+..+..++.-.|+++.|.+.|+.. +.+ -..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45777777777788999888766542 23345443 3567888899999999999999988754 222 234
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc----C--CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 477 ALWGTLLLACRNHQNVTLAEVVVEGLVEL----K--ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 477 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.+...|...|.-..++++|+.++.+=+.+ + ......+..|+.+|...|..++|.-+.+.-.+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45566777777778888998887765543 2 234567888999999999999998777665443
No 173
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.60 E-value=0.067 Score=50.35 Aligned_cols=106 Identities=15% Similarity=0.131 Sum_probs=66.9
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHH
Q 007871 348 LIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427 (586)
Q Consensus 348 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 427 (586)
-+.-+...|+...|.++-.+..-|+-.-|-..+.+++..+++++-.++... +-++..|..++.+|.+.|+..+|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence 344445567777777777776667777777777777777777766654321 22345667777777777777777
Q ss_pred HHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
..+..++ + +..-+..|.++|++.+|.+.--+.
T Consensus 257 ~~yI~k~------~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 257 SKYIPKI------P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHhC------C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 7666552 1 134456667777777776655443
No 174
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.59 E-value=0.0011 Score=64.00 Aligned_cols=118 Identities=11% Similarity=0.140 Sum_probs=85.4
Q ss_pred CCChhhHhHHHHHhccCCCCChHHHHHHHhcc-CCC-----CcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCccc
Q 007871 41 ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI-YQP-----NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYT 114 (586)
Q Consensus 41 ~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~-~~~-----~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~ 114 (586)
+-+......++. .+... .+++.+..++-+. ..| -..+.+++++.|...|..+.+++++..=...|+-||..+
T Consensus 63 ~vS~~dld~fvn-~~~~~-~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 63 PVSSLDLDIFVN-NVESK-DDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCcHHHHHHHHh-hcCCH-hHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 444445555666 55555 6777777777666 222 233567888888888888888888888888888888888
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 007871 115 YPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC 160 (586)
Q Consensus 115 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 160 (586)
++.||..+.+.|++..|.++..+|...+.-.+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888777666666666555555554
No 175
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.59 E-value=8.4e-05 Score=42.47 Aligned_cols=29 Identities=28% Similarity=0.573 Sum_probs=21.3
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHhHhCC
Q 007871 79 MHNTMIRGYTQSSNPQKALSFYVNMKRKG 107 (586)
Q Consensus 79 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 107 (586)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 67777777777777777777777777665
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.58 E-value=0.0098 Score=55.49 Aligned_cols=168 Identities=14% Similarity=0.125 Sum_probs=78.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 007871 275 WSIMIDGYAQHGNPKEALYLFREMLCQ----GVRPD-VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349 (586)
Q Consensus 275 ~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (586)
|......|-..|++++|...|.+.... +-+.+ ...|.....++ +..+++.|...++. .+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~---------------A~ 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEK---------------AI 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHH---------------HH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHH---------------HH
Confidence 444456666667777777766665421 10000 01122222222 22244444444333 33
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHhhccC
Q 007871 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN-GFGEEALKCFAQMET----EGIPKD--DLIFLGVLIACSHSG 422 (586)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~----~g~~p~--~~~~~~l~~~~~~~g 422 (586)
..|...|++..|-..+. .+...|... |++++|++.|++..+ .| .+. ..++..+...+.+.|
T Consensus 102 ~~y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC
Confidence 44555555555544443 234555555 666777666666543 22 111 124555566666777
Q ss_pred CHHHHHHHHHHhHHhhCC----CCCh-HHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 423 LATEGYRIFQSMKRHCGI----EPKL-EHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 423 ~~~~A~~~~~~~~~~~~~----~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
++++|.++|+++....-- ..+. ..+...+-++...|+...|.+.+++.
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777776552110 1111 12233344556667777777777664
No 177
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.58 E-value=0.077 Score=50.52 Aligned_cols=116 Identities=9% Similarity=0.083 Sum_probs=77.3
Q ss_pred hhccCC-HHHHHHHHHHhHHhhCCCCChHHHHHHH----HHHhhc---CCHH---HHHHHHHhCCCCC----CHHHHHHH
Q 007871 418 CSHSGL-ATEGYRIFQSMKRHCGIEPKLEHYSCLV----DLLSRA---GELE---QALNIVESMPMKP----NLALWGTL 482 (586)
Q Consensus 418 ~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---g~~~---~A~~~~~~~~~~p----~~~~~~~l 482 (586)
+.+.|. -++|+++++.+.+ --+.|...-+.+. ..|..+ ..+. .-...+++.+..| +...-+.+
T Consensus 389 lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L 466 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL 466 (549)
T ss_pred HHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence 445555 7788888888776 2233444333322 122211 1111 2223344444444 44566667
Q ss_pred HHH--HHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 483 LLA--CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 483 ~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
..+ +..+|++.++.-.-.-+.+..| ++.+|..++-++....+|++|+.++..+
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 666 6789999999988888888888 9999999999999999999999999765
No 178
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00064 Score=63.31 Aligned_cols=84 Identities=12% Similarity=0.032 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCeeEEEECCe
Q 007871 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGN 555 (586)
Q Consensus 476 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 555 (586)
..++..+..++.+.+++..|+....++++.+|+|..+++.-+.+|...|.++.|+..|+++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k----------------- 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK----------------- 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH-----------------
Confidence 345667777888888888888888888888888888888888888888888888888888876
Q ss_pred EeEEecCCCCCCChhHHHHHHHHHHHHHhh
Q 007871 556 IKEFVSGEIFDVQSEELELVIQSFVKTTIE 585 (586)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 585 (586)
..|.++++...|..+.++.++
T Consensus 320 ---------~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 320 ---------LEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ---------hCCCcHHHHHHHHHHHHHHHH
Confidence 357777777777777776653
No 179
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.56 E-value=0.003 Score=58.62 Aligned_cols=135 Identities=12% Similarity=0.138 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 007871 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA-CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452 (586)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 452 (586)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+ .++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 357777777777778888888888887532 2233444444433 3335677778999998888 46677788888888
Q ss_pred HHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc
Q 007871 453 LLSRAGELEQALNIVESMP-MKPN----LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511 (586)
Q Consensus 453 ~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 511 (586)
.+...|+.+.|..+|++.- .-|. ...|...+..-.+.|+.+.+..+.+++.+.-|.+..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 8888899999999988772 2233 358888888888889999999999888887776443
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.54 E-value=0.0044 Score=62.51 Aligned_cols=138 Identities=11% Similarity=0.035 Sum_probs=100.9
Q ss_pred CCCCCCHHHHHHHHHHhhc--c---CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc--------CCHHHHHHHHH
Q 007871 402 EGIPKDDLIFLGVLIACSH--S---GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA--------GELEQALNIVE 468 (586)
Q Consensus 402 ~g~~p~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~ 468 (586)
.+.+.+...|..++++... . ++...|..+|++..+ ..|.+...+..+..+|... ++...+.+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3456777888888887533 2 347789999999988 3444556666665555332 12334444444
Q ss_pred hC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 469 SM----PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 469 ~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
+. ....++..+..+.......|++++|...++++.+++| +...|..++.++...|+.++|.+.+++....+..
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 42 1233566777776667778999999999999999999 5789999999999999999999999998775544
No 181
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.53 E-value=0.0025 Score=51.83 Aligned_cols=91 Identities=7% Similarity=-0.088 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (586)
....+...+...|++++|..+|+-+.. +.|.. .-|..|..+|...|++++|+..|..... --+.|+..+-.++.+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c 112 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHH
Confidence 333344444455555555555555544 23322 3344444444555555555555555544 123344455555555
Q ss_pred HhhcCCHHHHHHHHHh
Q 007871 454 LSRAGELEQALNIVES 469 (586)
Q Consensus 454 ~~~~g~~~~A~~~~~~ 469 (586)
+...|+.+.|.+.|+.
T Consensus 113 ~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 113 YLACDNVCYAIKALKA 128 (157)
T ss_pred HHHcCCHHHHHHHHHH
Confidence 5555555555554443
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.52 E-value=0.007 Score=51.55 Aligned_cols=80 Identities=11% Similarity=0.042 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHH
Q 007871 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK--DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451 (586)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 451 (586)
..|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...++.... ..+.....+..++
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHH
Confidence 345556666667777777777777776532222 123566666777777777777777777766 2333445555555
Q ss_pred HHHh
Q 007871 452 DLLS 455 (586)
Q Consensus 452 ~~~~ 455 (586)
.++.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.48 E-value=0.0002 Score=50.20 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=27.7
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 420 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
..|++++|.++|+.+.. ..|.+...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35566666666666655 23335555555666666666666666666555
No 184
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.46 E-value=0.00016 Score=41.22 Aligned_cols=29 Identities=38% Similarity=0.671 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 007871 274 SWSIMIDGYAQHGNPKEALYLFREMLCQG 302 (586)
Q Consensus 274 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 302 (586)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777777665
No 185
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.45 E-value=0.00096 Score=50.08 Aligned_cols=80 Identities=18% Similarity=0.131 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHhHhCCC-CCCcccHHHHHHHHhccCC--------chHHHHHHHHHHHhCCCCchhHH
Q 007871 80 HNTMIRGYTQSSNPQKALSFYVNMKRKGL-LVDNYTYPFVLKACGVLMG--------LVEGTEIHGEVVKMGFLCDVFVV 150 (586)
Q Consensus 80 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~ 150 (586)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++.- .-....+++.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556777778999999999999999999 8999999999998876532 33467899999999999999999
Q ss_pred HHHHHHHHh
Q 007871 151 NGLIGMYSK 159 (586)
Q Consensus 151 ~~li~~~~~ 159 (586)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887654
No 186
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.43 E-value=0.0022 Score=48.25 Aligned_cols=81 Identities=10% Similarity=0.022 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------ChhHHHHHHHHHHHcCCCCchhH
Q 007871 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGV-RPDVISVMGAISACAQVG--------ALDLGKWIHVFMKRSRITMDMIV 344 (586)
Q Consensus 274 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 344 (586)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+|++|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334456667777999999999999999999 899999999999876543 23456778899999999999999
Q ss_pred HHHHHHHHHh
Q 007871 345 QTALIDMYMK 354 (586)
Q Consensus 345 ~~~l~~~~~~ 354 (586)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887654
No 187
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.42 E-value=0.0001 Score=42.81 Aligned_cols=34 Identities=26% Similarity=0.508 Sum_probs=31.2
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 007871 498 VVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531 (586)
Q Consensus 498 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 531 (586)
+|+++++.+|+++.+|+.++.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3788999999999999999999999999999863
No 188
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.39 E-value=0.06 Score=53.88 Aligned_cols=330 Identities=11% Similarity=0.031 Sum_probs=169.2
Q ss_pred CChHHHHHHHhccCCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCC-CCCCcccHHHHHHHHhccCCchHHHHHHHHH
Q 007871 60 LNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKG-LLVDNYTYPFVLKACGVLMGLVEGTEIHGEV 138 (586)
Q Consensus 60 ~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 138 (586)
|++++|++++-++.+.|. -+..+.+.|+|-...++++.--... -+.-...++.+...++....++.|.+.+..-
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 889999999988876654 3556667778877777765421110 0111235677777777777777777776543
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHH
Q 007871 139 VKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDG 218 (586)
Q Consensus 139 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~ 218 (586)
.. ....+.++.+..++++-..+...+++. ....-.+...+...|..++|.+.|-+-..|. ..+..
T Consensus 823 ~~---------~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~t 887 (1189)
T KOG2041|consen 823 GD---------TENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHT 887 (1189)
T ss_pred cc---------hHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHH
Confidence 21 123456666666666666665555543 3345566677777777777777766655443 23445
Q ss_pred HhhccCCHHHHHHHHHhCCCCChhHHHHH-HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHH
Q 007871 219 YRKKKGDISSARILFEHMPIKDLISWNSM-IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297 (586)
Q Consensus 219 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 297 (586)
| ...++|.+|.++-++..-|.+.+.-+- ...+...++.-+|+ ..+.+.|++-.|.+++.+
T Consensus 888 C-v~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaI------------------e~~Rka~~~~daarll~q 948 (1189)
T KOG2041|consen 888 C-VELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAI------------------EKDRKAGRHLDAARLLSQ 948 (1189)
T ss_pred H-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHH------------------HHhhhcccchhHHHHHHH
Confidence 5 667777777777776665555443221 11122233333332 334455555555566655
Q ss_pred HHH----CCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC-CCC
Q 007871 298 MLC----QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKN 372 (586)
Q Consensus 298 m~~----~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~ 372 (586)
|.+ .+.++-..--..++.++. ..+..++.+-.+....+|...+... +...|-.+++.++.+..- -..
T Consensus 949 mae~e~~K~~p~lr~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~WrgAE 1020 (1189)
T KOG2041|consen 949 MAEREQEKYVPYLRLKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWRGAE 1020 (1189)
T ss_pred HhHHHhhccCCHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhhhHH
Confidence 543 233332221111222211 1122223333333333443222211 112233333333333211 122
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 373 VISYNVMIAGLGMNGFGEEALKCFAQMET-EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
...|..|.+-....|..+.|++.--.+.. ..+-|....|..+.-+-+....+...-+.|-++..
T Consensus 1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 33444455556667777777765433332 12556666676666655555555555555555544
No 189
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.39 E-value=0.0022 Score=59.55 Aligned_cols=129 Identities=10% Similarity=0.126 Sum_probs=101.5
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR-AGELEQALNIVESM--PMKPNLALWGTLLLA 485 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 485 (586)
.+|..++....+.+..+.|..+|.++.+ ....+..+|...+..-.. .++.+.|.++|+.. ....+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4677888888888889999999999986 333455667666666444 56677799999987 344578889999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 486 CRNHQNVTLAEVVVEGLVELKADDC---GLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+...|+.+.|..+|++++..-|... .+|...+..=.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765544 68999999999999999999999998764
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.38 E-value=0.00049 Score=48.36 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCC
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQ-NVTLAEVVVEGLVELKA 507 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 507 (586)
+...|..++..+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456677777777777777777777766 2333 5666777777777777 68888888888887776
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.36 E-value=0.0024 Score=50.01 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=26.4
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhhCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 415 LIACSHSGLATEGYRIFQSMKRHCGIEPK--LEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
..++-..|+.++|+.+|++... .|.... ...+-.+...|...|++++|..++++.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~-~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~ 64 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALA-AGLSGADRRRALIQLASTLRNLGRYDEALALLEEA 64 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344455555555555555555 243332 223334444555555555555555443
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.36 E-value=0.0054 Score=48.03 Aligned_cols=90 Identities=14% Similarity=0.129 Sum_probs=68.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCC---ChHHHHHHHH
Q 007871 378 VMIAGLGMNGFGEEALKCFAQMETEGIPKDD--LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP---KLEHYSCLVD 452 (586)
Q Consensus 378 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~ 452 (586)
.+..++-..|+.++|+.+|++....|..... ..+..+...+...|++++|..+++....+ .+. +......+..
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHH
Confidence 3456677889999999999999998876653 46777888899999999999999998874 222 3333444556
Q ss_pred HHhhcCCHHHHHHHHHh
Q 007871 453 LLSRAGELEQALNIVES 469 (586)
Q Consensus 453 ~~~~~g~~~~A~~~~~~ 469 (586)
++...|+.++|++.+-.
T Consensus 84 ~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 77888999998887654
No 193
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.34 E-value=0.015 Score=54.22 Aligned_cols=126 Identities=15% Similarity=0.133 Sum_probs=77.7
Q ss_pred HHHHHHHHhhcc-CCHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCC---C-----CCCH
Q 007871 410 IFLGVLIACSHS-GLATEGYRIFQSMKRHCGIEPK----LEHYSCLVDLLSRAGELEQALNIVESMP---M-----KPNL 476 (586)
Q Consensus 410 ~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-----~p~~ 476 (586)
.+..+...|... |+++.|.+.|++...-+..... ..++..++..+.+.|++++|.++|++.. . +.+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344455567777 8999999999988762211111 3566778899999999999999998762 1 1122
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc-----hHHHHHHHHHhc--CCchHHHHHHHH
Q 007871 477 -ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG-----LYVLLSNIYADA--GMWEHALRIRKM 535 (586)
Q Consensus 477 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~--g~~~~A~~~~~~ 535 (586)
..+...+-++...||...|...+++....+|.-.. +...|+.++-.. ..+++|+.-|+.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence 22334444567789999999999999988875332 344445444322 334445444443
No 194
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.34 E-value=0.032 Score=50.48 Aligned_cols=171 Identities=11% Similarity=-0.002 Sum_probs=98.5
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC--CCH-h---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhh
Q 007871 348 LIDMYMKCGSLDEARRIFYSMTK--KNV-I---SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD--LIFLGVLIACS 419 (586)
Q Consensus 348 l~~~~~~~g~~~~a~~~~~~~~~--~~~-~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~ 419 (586)
....+...|++++|.+.|+.+.. |+. . ..-.++.++.+.+++++|...+++..+. .|+. ..+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 33444556777777777777663 222 1 1234556677788888888888887773 2322 22222222221
Q ss_pred --ccC---------------C---HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 007871 420 --HSG---------------L---ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479 (586)
Q Consensus 420 --~~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 479 (586)
..+ + ...|...|+.++++ .| + ..-..+|...+..+...-.. .-
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP-~-------------S~ya~~A~~rl~~l~~~la~-~e 178 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YP-N-------------SQYTTDATKRLVFLKDRLAK-YE 178 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--Cc-C-------------ChhHHHHHHHHHHHHHHHHH-HH
Confidence 111 1 22344555555542 22 2 22223333333322110000 11
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDC---GLYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 480 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
..+...|.+.|.+..|..-++.+++.-|+.+ .+...++.+|.+.|..++|..+...+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1344558899999999999999999877755 456778889999999999999887664
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.33 E-value=0.0021 Score=58.56 Aligned_cols=84 Identities=13% Similarity=0.020 Sum_probs=39.9
Q ss_pred hhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCc
Q 007871 455 SRAGELEQALNIVESM-PMKPN----LALWGTLLLACRNHQNVTLAEVVVEGLVELKADD---CGLYVLLSNIYADAGMW 526 (586)
Q Consensus 455 ~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 526 (586)
.+.|++++|...|+.. ...|+ +..+..+..+|...|++++|...|+++.+..|++ +.++..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3345555555544444 11121 2233444444555555555555555555544443 23334445555555555
Q ss_pred hHHHHHHHHHHh
Q 007871 527 EHALRIRKMMRK 538 (586)
Q Consensus 527 ~~A~~~~~~m~~ 538 (586)
++|..+|+++.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 196
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.33 E-value=0.16 Score=48.46 Aligned_cols=442 Identities=12% Similarity=0.070 Sum_probs=206.9
Q ss_pred HHHHccCchHHHHHHHHHHHcCCCCChhhH------hHHHHHhccCCCCChHHHHHHHhcc--CCCCcchHHHHHHHH--
Q 007871 18 LLQISKTTTHILQILAQLTTNDLITEPFTL------SQLLMSLTSPNTLNMDQAERLFNQI--YQPNTYMHNTMIRGY-- 87 (586)
Q Consensus 18 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~ll~~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~ll~~~-- 87 (586)
.|+..+++.++.+++..+.+.. ..++..+ +.++. +|... +.+.....+... ..| ...|-.|..++
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~griln-Affl~--nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILN-AFFLN--NLDLMEKQLMELRQQFG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHH-HHHHh--hHHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4667788888888888887753 3333333 34555 45443 566666555555 223 44555555443
Q ss_pred hcCCCchhHHHHHHHhHhC--CCCC---Cccc---------HHHHHHHHhccCCchHHHHHHHHHHHhCCC----CchhH
Q 007871 88 TQSSNPQKALSFYVNMKRK--GLLV---DNYT---------YPFVLKACGVLMGLVEGTEIHGEVVKMGFL----CDVFV 149 (586)
Q Consensus 88 ~~~~~~~~A~~~~~~m~~~--~~~~---~~~~---------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~ 149 (586)
.+.+.++.|++.+..-.+. +.+| |... =+..+..+...|++.+++.++..+...=++ -+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 4678888888887766554 2111 1111 134455666778888888888777654333 56777
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhh----ccCC
Q 007871 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK----KKGD 225 (586)
Q Consensus 150 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~----~~g~ 225 (586)
|+.++-+++++=-.+ +-+.+...=..-|..++..|.+.=+.-++.. |++. -|.......++..... +.--
T Consensus 170 yd~~vlmlsrSYfLE----l~e~~s~dl~pdyYemilfY~kki~~~d~~~-Y~k~-~peeeL~s~imqhlfi~p~e~l~~ 243 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLE----LKESMSSDLYPDYYEMILFYLKKIHAFDQRP-YEKF-IPEEELFSTIMQHLFIVPKERLPP 243 (549)
T ss_pred HHHHHHHHhHHHHHH----HHHhcccccChHHHHHHHHHHHHHHHHhhch-HHhh-CcHHHHHHHHHHHHHhCCHhhccH
Confidence 777666655532111 1111111111234445545443211111100 0000 1222222222222200 1111
Q ss_pred HHHHHHHHHhCC-CCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCC--------CCChhHHHHHHHHHHhCCCchHHHHHH
Q 007871 226 ISSARILFEHMP-IKD-LISWNSMIDGYAKIGDLVAAQQLFNEMP--------ERNVFSWSIMIDGYAQHGNPKEALYLF 295 (586)
Q Consensus 226 ~~~a~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~ 295 (586)
+-.+.+.|++-- .|+ ..+...+...+.. +.+++..+.+.+. +.=+.++..++....+.++...|.+.+
T Consensus 244 ~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l 321 (549)
T PF07079_consen 244 LMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL 321 (549)
T ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 222333333221 222 2223333333333 3333333333322 133456777777778888888887777
Q ss_pred HHHHHCCCCCCHHHHHHH-------HHHHh-ccC---ChhHHHHHHHHHHHcCCCCchhHHHHHHHH---HHhcC-CHHH
Q 007871 296 REMLCQGVRPDVISVMGA-------ISACA-QVG---ALDLGKWIHVFMKRSRITMDMIVQTALIDM---YMKCG-SLDE 360 (586)
Q Consensus 296 ~~m~~~g~~~~~~~~~~l-------~~~~~-~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g-~~~~ 360 (586)
.-+.-. .|+...-..+ -+..+ ... +...-..+|..+...++..- .....|+.+ +-+.| .-++
T Consensus 322 ~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dek 398 (549)
T PF07079_consen 322 ALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEK 398 (549)
T ss_pred HHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHH
Confidence 666543 3333221111 11111 111 12222334444444433211 111122221 22333 3666
Q ss_pred HHHHHhccCC---CCHhHHHHHH----HHHHh---cCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHH--hhccCCH
Q 007871 361 ARRIFYSMTK---KNVISYNVMI----AGLGM---NGFGEEALKCFAQMETEGIPKDD----LIFLGVLIA--CSHSGLA 424 (586)
Q Consensus 361 a~~~~~~~~~---~~~~~~~~l~----~~~~~---~~~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~--~~~~g~~ 424 (586)
|..+++.+.+ -|...-|... ..|.+ .....+-+.+-+-..+.|++|-. ..-+.|.+| +..+|++
T Consensus 399 alnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 399 ALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence 7777766653 2333222221 12211 12233333444444556666533 233333333 3456777
Q ss_pred HHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 007871 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480 (586)
Q Consensus 425 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 480 (586)
.++.-.-..+.+ +.|++.+|..++-++....++++|.+++..++ |+..+++
T Consensus 479 ~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~d 529 (549)
T PF07079_consen 479 HKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRD 529 (549)
T ss_pred HHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHH
Confidence 776554444433 56777777777777777777777777777764 4444443
No 197
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.28 E-value=0.18 Score=48.05 Aligned_cols=135 Identities=15% Similarity=0.112 Sum_probs=101.6
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHH
Q 007871 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450 (586)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 450 (586)
-..+|...+..-.+....+.|..+|-+..+.| +.++...++.++..++ .|++..|.++|+.-.. .++.+...-+..
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHH
Confidence 34567777888888888899999999999888 5667777888877554 5788889999988777 344444445566
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007871 451 VDLLSRAGELEQALNIVESMP--MK--PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509 (586)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~~--~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 509 (586)
+.-+.+.++-+.|..+|+..- +. .-...|..++..-..-|+...+..+-+++.+.-|..
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 777788899999999998551 11 225678888888888889888888888888877653
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.25 E-value=0.048 Score=45.19 Aligned_cols=124 Identities=10% Similarity=-0.001 Sum_probs=76.8
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHH
Q 007871 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTK----KNVISYNVMIAGLGMNGFGEEALKCFAQMETEG---IPKDDLIF 411 (586)
Q Consensus 339 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g---~~p~~~~~ 411 (586)
-|+...-..|..+....|+..+|...|++... .|....-.+.++....+++..|...++++-+.. -.| .+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p--d~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP--DGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC--Cch
Confidence 44555555566666667777777776666552 466666666667777777777777777766532 222 234
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 007871 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467 (586)
Q Consensus 412 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 467 (586)
..+.+.+...|.+.+|+..|+.... .-|+...-......+.++|+.++|..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 4556667777777777777777766 2455554445556667777666654433
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.024 Score=49.68 Aligned_cols=131 Identities=10% Similarity=-0.060 Sum_probs=62.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHH-----HHH
Q 007871 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS-----CLV 451 (586)
Q Consensus 377 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~l~ 451 (586)
++++..+.-.|.+.-.+..+++.++...+.++.....|++.-.+.||.+.|...|++..+. .-..+....+ ...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhh
Confidence 4444444455555555566666655433444455555555555666666666666655442 1122222222 222
Q ss_pred HHHhhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007871 452 DLLSRAGELEQALNIVESMPMK--PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508 (586)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 508 (586)
..|.-+.++.+|...++++... .++...+.-.-+..-.|+..+|++..+.+.+..|.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 3344444555555555555211 12333333333333445555555555555555544
No 200
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.22 E-value=0.0017 Score=62.12 Aligned_cols=65 Identities=15% Similarity=-0.067 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcch---HHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL---YVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 475 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+...++.+..+|...|++++|+..|+++++++|+++.. |+.++.+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566666666666666666666666666666666633 666666666666666666666666554
No 201
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.22 E-value=0.08 Score=50.32 Aligned_cols=161 Identities=16% Similarity=0.004 Sum_probs=95.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCC-------CHhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007871 347 ALIDMYMKCGSLDEARRIFYSMTKK-------NVISYNVMIAGLGM---NGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416 (586)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 416 (586)
.++-.|....+++...++.+.+... ....-....-++.+ .|+.++|++++..+......+++.++..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4455567777777777777776642 12222233445555 7888888888888666556777778877777
Q ss_pred Hhhc---------cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHH----HHHHHH---HhC----C---CC
Q 007871 417 ACSH---------SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE----QALNIV---ESM----P---MK 473 (586)
Q Consensus 417 ~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~----~---~~ 473 (586)
.|-. ....++|...|.+.-. +.|+...=-.++..+...|... +..++- ... + ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6521 2246677777776533 3444333223333333344321 222221 111 1 12
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 474 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
.+-.-+.+++.++.-.||+++|.+.++++.++.|+.-
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 3445556788888889999999999999999876644
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.21 E-value=0.0086 Score=54.59 Aligned_cols=101 Identities=12% Similarity=0.114 Sum_probs=69.1
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC---hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHH
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK---LEHYSCLVDLLSRAGELEQALNIVESM----PMKP-NLALWGT 481 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ 481 (586)
.|...+....+.|++++|...|+.+.+. .|-+ ...+..++.+|...|++++|...|+.+ +..| ....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444443345567788888888887773 2222 356667788888888888888888776 2222 3455555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcch
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGL 512 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 512 (586)
+...+...|++++|...|+++++..|++...
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 6666778899999999999999888887643
No 203
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.18 E-value=0.00069 Score=42.35 Aligned_cols=42 Identities=26% Similarity=0.285 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 007871 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSN 518 (586)
Q Consensus 477 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 518 (586)
..+..+..+|...|++++|+++|+++++.+|+|+.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 457778889999999999999999999999999999988864
No 204
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.18 E-value=0.0094 Score=57.73 Aligned_cols=118 Identities=14% Similarity=0.080 Sum_probs=65.2
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC----CCHhHH
Q 007871 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRS--RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK----KNVISY 376 (586)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~ 376 (586)
.+.+...+..+++.+....+++.+..++...... ....-..+..+++..|...|..+++..++..=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445555556666666666666666655555443 1112223334566666666666666666554332 566666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 007871 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420 (586)
Q Consensus 377 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 420 (586)
+.|+..+.+.|++..|.++...|..++...++.|+...+.+|.+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666666666555555555555544444443
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.024 Score=49.62 Aligned_cols=170 Identities=11% Similarity=0.001 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--C--------hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHH
Q 007871 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPER--N--------VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310 (586)
Q Consensus 241 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~ 310 (586)
...++.|.+.+.-...+++-...++.-..| . ....+.++..+...|.+.-....+++.++...+.++...
T Consensus 136 gnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~ 215 (366)
T KOG2796|consen 136 GNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLL 215 (366)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHH
Confidence 334556666665555555555555544331 2 234456777778888999999999999987767788888
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHcCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHH
Q 007871 311 MGAISACAQVGALDLGKWIHVFMKRSRITMD-----MIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAG 382 (586)
Q Consensus 311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~ 382 (586)
..+.+.-.+.||.+.|..++++..+..-..+ ..+.......|.-.+++..|...+.++.. .++..-|.-.-.
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 8899999999999999999997765533333 33333444556667888888888887774 345555555555
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 007871 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFL 412 (586)
Q Consensus 383 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 412 (586)
..-.|+..+|++.++.|.. ..|.+.+-+
T Consensus 296 llYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 296 LLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 5567889999999999988 456554443
No 206
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.023 Score=53.17 Aligned_cols=173 Identities=14% Similarity=0.047 Sum_probs=103.5
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCHh-HHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-------------
Q 007871 350 DMYMKCGSLDEARRIFYSMTKKNVI-SYNVMIAG--LGMNGFGEEALKCFAQMETEGIPKDDLIFLG------------- 413 (586)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l~~~--~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~------------- 413 (586)
.++...|++++|.+.-..+.+-|.. .+...+++ +...++.+.+...|++.+. ..|+...-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHh
Confidence 4566677777777766655543322 22333333 3456677788888877766 4455432111
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHh--hCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH---HHHHHHHh
Q 007871 414 VLIACSHSGLATEGYRIFQSMKRH--CGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG---TLLLACRN 488 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~---~l~~~~~~ 488 (586)
-.+-..+.|++..|.+.|.+.+.- .+..++...|........+.|+..+|+.-.+... ..|+.... .-..++..
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHH
Confidence 122335678888888888887651 1334456667777778888889988888877662 22333222 22334667
Q ss_pred cCChHHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCC
Q 007871 489 HQNVTLAEVVVEGLVELKAD--DCGLYVLLSNIYADAGM 525 (586)
Q Consensus 489 ~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 525 (586)
.++|++|.+-++++.+.... ....+......+.++.+
T Consensus 334 le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKR 372 (486)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhh
Confidence 78888898888888886533 44444444444444433
No 207
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.05 E-value=0.22 Score=45.13 Aligned_cols=58 Identities=21% Similarity=0.054 Sum_probs=33.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCH-HHH---HHHHHHHhccCChhHHHHHHHHHHHcC
Q 007871 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDV-ISV---MGAISACAQVGALDLGKWIHVFMKRSR 337 (586)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~-~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (586)
....+...|++++|...|+++...- |+. ... -.+..++.+.++++.|...++...+..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3444555677777777777776642 222 221 234455566666666666666666554
No 208
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.02 E-value=0.0013 Score=47.51 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 477 ALWGTLLLACRNHQNVTLAEVVVEGLVEL----KAD---DCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 477 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
.++..+...|...|++++|+..++++++. ++. -..++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666777777777777777777753 112 245677788888888888888888887653
No 209
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.051 Score=49.15 Aligned_cols=107 Identities=17% Similarity=0.098 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCC-CHHHH
Q 007871 405 PKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG---ELEQALNIVESM-PMKP-NLALW 479 (586)
Q Consensus 405 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~ 479 (586)
+-|...|..|..+|...|+.+.|...|....+ -.++++..+..+..++..+. +..++..+|+++ ..+| |....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 45668899999999999999999999999988 45667778888887765443 466788888887 3444 56666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchH
Q 007871 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLY 513 (586)
Q Consensus 480 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 513 (586)
..+...+...|++.+|...++.|.+..|.+..-.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 6677779999999999999999999887766433
No 210
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.00 E-value=0.11 Score=40.43 Aligned_cols=141 Identities=11% Similarity=0.059 Sum_probs=87.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHH
Q 007871 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462 (586)
Q Consensus 383 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 462 (586)
+.-.|..++..++..+... ..+..-+++++--....-+=+-..++++.+-+-+ |. ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~---Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF----Di----------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVN---SSNIKEYNWVICNIIDAADCDYVVETLDSIGKIF----DI----------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHH---HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-----G----------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcC---cCCccccceeeeecchhhchhHHHHHHHHHhhhc----Cc----------hhhcchHH
Confidence 4456778888888887765 2344556666654444444455555555554421 11 23444555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 463 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
....+-.+. .+....+..+..+..+|.-+.-.+++..+.+.+..+|.+...++.+|.+.|+..++.+++.+.-+.|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 554444442 345566777788899999999999999998877889999999999999999999999999999999975
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.98 E-value=0.0032 Score=44.76 Aligned_cols=65 Identities=22% Similarity=0.240 Sum_probs=46.6
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHH
Q 007871 452 DLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLL 516 (586)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 516 (586)
.+|.+.+++++|.++++.+ ...| ++..+......+...|++++|.+.++++.+..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4667778888888887776 3334 556666677778888888888888888888888776554433
No 212
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.54 Score=47.97 Aligned_cols=321 Identities=13% Similarity=0.071 Sum_probs=179.3
Q ss_pred HHHHHHHHhCCChhHHHHHHhhCCCCC---hhHHHHHHHHHhhc--cCCHHHHHHHHHhCCC--CChhHHHHHHHHHHhc
Q 007871 182 NLVLRGFVECGEMGKAREVFDEMPQKD---AISWSIMIDGYRKK--KGDISSARILFEHMPI--KDLISWNSMIDGYAKI 254 (586)
Q Consensus 182 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~--~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~ 254 (586)
..++.-++..+.+..|.++-..+..|. ...|.........+ ..+-+.+..+-+++.. .....|..........
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 345566666777777777777776443 33333333333111 2233344444444444 3556677788888888
Q ss_pred CCHHHHHHHHhhCCCC--------ChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHH
Q 007871 255 GDLVAAQQLFNEMPER--------NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326 (586)
Q Consensus 255 g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a 326 (586)
|+.+-|..+++.=... +..-+...+.-..+.||++....++-.+.+.- +...|... ..+...|
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~~p~a 591 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRNQPLA 591 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHhchhh
Confidence 8888888877665431 22334445556667777777777776665431 11112111 1233344
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc------CCCCHhHHHHHHHHHHhcCC----------hH
Q 007871 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM------TKKNVISYNVMIAGLGMNGF----------GE 390 (586)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~------~~~~~~~~~~l~~~~~~~~~----------~~ 390 (586)
..+|....+..-. ..+-+.|-...+...+-.+.-+- ..+-..........+.+... ..
T Consensus 592 ~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~ 665 (829)
T KOG2280|consen 592 LSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQM 665 (829)
T ss_pred hHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 5555544332100 11222222222222221111111 01112222223333333322 11
Q ss_pred HHHHHHHHHHH-CCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 007871 391 EALKCFAQMET-EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469 (586)
Q Consensus 391 ~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 469 (586)
+-+++.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+- ||...|..-+.+++..+++++-+++-++
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 11222233322 22223334556666667788999999887766533 7888888889999999999998888777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 007871 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 470 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 533 (586)
.+. +.-|.....+|.+.|+.++|.+++-+.-.. .....+|.+.|++.+|.++-
T Consensus 741 kks---PIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 741 KKS---PIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cCC---CCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHH
Confidence 642 455677888999999999999988665332 16778899999999988764
No 213
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.94 E-value=0.35 Score=45.31 Aligned_cols=244 Identities=16% Similarity=0.156 Sum_probs=152.9
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 007871 282 YAQHGNPKEALYLFREMLCQGVRPDVI--SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359 (586)
Q Consensus 282 ~~~~~~~~~A~~~~~~m~~~g~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 359 (586)
-.-.|+++.|.+-|+.|... |... .+..+.-...+.|+.+.|.++-+..-..- +.-.......+...+..|+|+
T Consensus 130 al~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 130 ALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred HHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChH
Confidence 34468888888888888752 3222 23334444467777777777776665543 223456677788888888888
Q ss_pred HHHHHHhccC-----CCCHhH--HHHHHHHHH---hcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHH
Q 007871 360 EARRIFYSMT-----KKNVIS--YNVMIAGLG---MNGFGEEALKCFAQMETEGIPKDDL-IFLGVLIACSHSGLATEGY 428 (586)
Q Consensus 360 ~a~~~~~~~~-----~~~~~~--~~~l~~~~~---~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~ 428 (586)
.|+++++.-. ++++.- --.|+.+-. -..+...|...-.+..+ +.|+.. .-..-..++.+.|+..++-
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhh
Confidence 8888887544 343321 122222211 12345555555555444 667653 3444456788999999999
Q ss_pred HHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007871 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM----PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLV 503 (586)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 503 (586)
.+++.+-+ ..|.+.++..+ .+.+.|+. +..-+++. ..+| +......+..+....|++..|..-.+.+.
T Consensus 284 ~ilE~aWK---~ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 284 KILETAWK---AEPHPDIALLY--VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred hHHHHHHh---cCCChHHHHHH--HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 99999877 24555544332 33455543 22222222 2334 56667777788888999999988888877
Q ss_pred hcCCCCcchHHHHHHHHHhc-CCchHHHHHHHHHHhC
Q 007871 504 ELKADDCGLYVLLSNIYADA-GMWEHALRIRKMMRKR 539 (586)
Q Consensus 504 ~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 539 (586)
...|. ..+|..|+++-... |+-.+++..+-+..+.
T Consensus 357 r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 357 REAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 77665 44777788876555 9999999888877654
No 214
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.017 Score=54.11 Aligned_cols=96 Identities=11% Similarity=-0.006 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007871 445 EHYSCLVDLLSRAGELEQALNIVESM--PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522 (586)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 522 (586)
.++..+.-+|.+.+++..|++..++. -.++|......-..+|...|+++.|+..|+++++.+|.|..+...++.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 46778899999999999999998877 2446788888888899999999999999999999999999999999988877
Q ss_pred cCCchHH-HHHHHHHHhCC
Q 007871 523 AGMWEHA-LRIRKMMRKRK 540 (586)
Q Consensus 523 ~g~~~~A-~~~~~~m~~~~ 540 (586)
..++.+. .+.|..|-..-
T Consensus 338 ~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 7766655 77898886543
No 215
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.91 E-value=0.012 Score=50.41 Aligned_cols=87 Identities=11% Similarity=0.120 Sum_probs=60.8
Q ss_pred CChhHHHHHHHHHHh-----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----------------CChhHHHH
Q 007871 270 RNVFSWSIMIDGYAQ-----HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV----------------GALDLGKW 328 (586)
Q Consensus 270 ~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~----------------~~~~~a~~ 328 (586)
.+-.+|..++..|.+ .|..+-....++.|.+-|+.-|..+|+.|+..+-+. .+.+-|..
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 455555555555543 355666666777777777777777787777776543 23456788
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 007871 329 IHVFMKRSRITMDMIVQTALIDMYMKCG 356 (586)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g 356 (586)
+++.|...|+-||..++..+++.+++.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 8888888888888888888888876544
No 216
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.89 E-value=0.44 Score=45.55 Aligned_cols=127 Identities=17% Similarity=0.212 Sum_probs=97.0
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhhC-CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHH
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCG-IEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPNLALW-GTLLLA 485 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~ 485 (586)
..|...+++..+..-.+.|..+|-++.+. + ..+++.++++++.-+ ..|+..-|..+|+-- ..-||...| ...+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45677777777888899999999999985 5 677888898888866 578888999999854 334555554 455666
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 486 CRNHQNVTLAEVVVEGLVELKADD--CGLYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
+...++-..|..+|++.++.-..+ ..+|..++.--..-|+...+..+=++|.
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 788899999999999877754333 6688888888888888877776666554
No 217
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.84 E-value=0.069 Score=46.97 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=38.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHhcCCchHHH
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKADDCG---LYVLLSNIYADAGMWEHAL 530 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 530 (586)
+...|.+.|.+..|..-++.+++.-|+.+. +...++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 455588999999999999999999888764 4666788899999888544
No 218
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.77 E-value=0.097 Score=51.99 Aligned_cols=22 Identities=14% Similarity=0.422 Sum_probs=14.6
Q ss_pred HHHHhCCCchHHHHHHHHHHHC
Q 007871 280 DGYAQHGNPKEALYLFREMLCQ 301 (586)
Q Consensus 280 ~~~~~~~~~~~A~~~~~~m~~~ 301 (586)
.+|.+.|+-.+|..+++++-..
T Consensus 825 kAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhhh
Confidence 3566677777777777776543
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.77 E-value=0.097 Score=52.01 Aligned_cols=175 Identities=15% Similarity=0.106 Sum_probs=86.0
Q ss_pred HHHHHHHHHhCCC--chHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007871 275 WSIMIDGYAQHGN--PKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352 (586)
Q Consensus 275 ~~~l~~~~~~~~~--~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 352 (586)
++..-.+|.+..+ +-+.+.-+++|.+.|-.|+... +...|+-.|.+.+|..+|.+ .|.. +..+++|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmy 668 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMY 668 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHH
Confidence 3333445555444 3345555677788887787754 34456667777777777753 2221 2334444
Q ss_pred HhcCCHHHHHHHHhccCC--------------CCHhHHHHHHHHHHhcCChHHHHHHHH------HHHHCCCCC---CHH
Q 007871 353 MKCGSLDEARRIFYSMTK--------------KNVISYNVMIAGLGMNGFGEEALKCFA------QMETEGIPK---DDL 409 (586)
Q Consensus 353 ~~~g~~~~a~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~A~~~~~------~m~~~g~~p---~~~ 409 (586)
.....++.|.+++..... .++.--.+....+...|+.++|..+.- -+.+-+.+. +..
T Consensus 669 TDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere 748 (1081)
T KOG1538|consen 669 TDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAERE 748 (1081)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhh
Confidence 444455555555443321 011001122333445555555554321 111111111 223
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 471 (586)
+...+...+.+...+..|-++|..+-. ...++......+++++|..+-++.+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCc
Confidence 444444444455555556666655533 2235555666667777766666653
No 220
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.029 Score=50.39 Aligned_cols=120 Identities=15% Similarity=0.103 Sum_probs=80.4
Q ss_pred HhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChH
Q 007871 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT---LLLACRNHQNVT 493 (586)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~ 493 (586)
.....|++.+|...|..... -.+-+...-..++.+|...|+.+.|..++..++..-...-+.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34567888888888888777 3344556667788888888888888888888864433333333 223333333333
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 494 LAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 494 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+...+ +.-...+|+|...-..++..|...|+.++|.+.+=.+.++
T Consensus 221 ~~~~l-~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQDL-QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33322 3334567888888888888899999999888877666554
No 221
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.72 E-value=0.025 Score=48.51 Aligned_cols=96 Identities=16% Similarity=0.254 Sum_probs=70.7
Q ss_pred HHHhcc--CCCCHhHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc--------------
Q 007871 363 RIFYSM--TKKNVISYNVMIAGLGM-----NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS-------------- 421 (586)
Q Consensus 363 ~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-------------- 421 (586)
..|+.. ...+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 34566677777777654 466677777888899999999999999999887542
Q ss_pred --CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCC
Q 007871 422 --GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459 (586)
Q Consensus 422 --g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (586)
.+-+-|++++++|.. +|+-||.+++..+++++++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 134567888888888 5888888888888888876664
No 222
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.72 E-value=0.047 Score=43.69 Aligned_cols=89 Identities=13% Similarity=0.124 Sum_probs=62.4
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcch---HHHHHHHHH
Q 007871 450 LVDLLSRAGELEQALNIVESMP----MKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL---YVLLSNIYA 521 (586)
Q Consensus 450 l~~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~ 521 (586)
-+....+.|++++|.+.|+.+. ..| ....-..++.++.+.+++++|...+++.++++|.++.+ +...+-++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3455567888888888888772 222 34555677888999999999999999999999887754 444454555
Q ss_pred hcCC---------------chHHHHHHHHHHh
Q 007871 522 DAGM---------------WEHALRIRKMMRK 538 (586)
Q Consensus 522 ~~g~---------------~~~A~~~~~~m~~ 538 (586)
++.. ..+|...|+++++
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 5544 5566666666655
No 223
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.68 E-value=1.1 Score=47.10 Aligned_cols=95 Identities=14% Similarity=0.034 Sum_probs=47.7
Q ss_pred CHHHHHHHHHhCCC-C-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 007871 225 DISSARILFEHMPI-K-DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302 (586)
Q Consensus 225 ~~~~a~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 302 (586)
..++...++++-.. | ....-...+..+.+.+++....+.+..- ..+...-.....+....|+.++|....+.+-..|
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 34444444444431 2 2223333444555666777666633222 2344444555666666777666666666665544
Q ss_pred CCCCHHHHHHHHHHHhccC
Q 007871 303 VRPDVISVMGAISACAQVG 321 (586)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~ 321 (586)
...+..+..++..+.+.|
T Consensus 160 -~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 160 -KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred -CCCChHHHHHHHHHHHcC
Confidence 223344555555554444
No 224
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.68 E-value=0.57 Score=43.96 Aligned_cols=280 Identities=14% Similarity=0.086 Sum_probs=129.1
Q ss_pred HHHHHHHHhc--CCCchhHHHHHHHhHhCCCCCCcccHHHHHHH--HhccCCchHHHHHHHHHHHhCCCCchh--HHHHH
Q 007871 80 HNTMIRGYTQ--SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA--CGVLMGLVEGTEIHGEVVKMGFLCDVF--VVNGL 153 (586)
Q Consensus 80 ~~~ll~~~~~--~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l 153 (586)
|.+|-.++.. .|+-..|.++-.+-... +.-|......|+.+ -...|+++.|.+-|+.|... |... -+..|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 4444444432 34555555544443221 22233333333332 22346666666666666541 2211 12233
Q ss_pred HHHHHhcCChhHHHHHhccCCC---CChhhHHHHHHHHHhCCChhHHHHHHhhCC-----CCChh--HHHHHHHHH--hh
Q 007871 154 IGMYSKCGHMGCARSVFEGSEI---KDLVSWNLVLRGFVECGEMGKAREVFDEMP-----QKDAI--SWSIMIDGY--RK 221 (586)
Q Consensus 154 i~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~ll~~~--~~ 221 (586)
.--.-+.|+.+.|..+-++.-. .-.+.+...+...+..|+++.|+++++.-+ .++.. .-..++.+- ..
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 3333455666666555544322 134556666666666666666666666544 22221 111122111 01
Q ss_pred ccCCHHHHHHHHHhCC--CCChhH-HHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhCCCchHHHHHHH
Q 007871 222 KKGDISSARILFEHMP--IKDLIS-WNSMIDGYAKIGDLVAAQQLFNEMPE--RNVFSWSIMIDGYAQHGNPKEALYLFR 296 (586)
Q Consensus 222 ~~g~~~~a~~~~~~~~--~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 296 (586)
-..+...|...-.+.. .||... -..-..++++.|++.++-.+++.+-+ |.+..+. +..+.+.|+. ++.-++
T Consensus 241 ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gdt--a~dRlk 316 (531)
T COG3898 241 LDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGDT--ALDRLK 316 (531)
T ss_pred hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCCc--HHHHHH
Confidence 1122333333322222 233222 22234566777777777777777654 3333332 2333455543 222222
Q ss_pred HHHHC-CCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH-hcCCHHHHHHHHhccC
Q 007871 297 EMLCQ-GVRP-DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM-KCGSLDEARRIFYSMT 369 (586)
Q Consensus 297 ~m~~~-g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~ 369 (586)
...+. .++| +......+..+....|++..|..--+..... .|....|..|.+.-. ..|+-.++...+.+..
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 22210 1223 3445555666666677776666555444333 455556666655443 3477777777776554
No 225
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.67 E-value=0.0093 Score=49.38 Aligned_cols=68 Identities=22% Similarity=0.169 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH-----hCCCccCC
Q 007871 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR-----KRKIKKET 545 (586)
Q Consensus 478 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~ 545 (586)
....++..+...|+++.|+..++++...+|-+...+..++.+|...|+..+|.+.|+++. +.|+.|++
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 445566778899999999999999999999999999999999999999999999998874 45777654
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.63 E-value=0.0034 Score=45.29 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 446 HYSCLVDLLSRAGELEQALNIVESM-------P-MKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
+++.++.+|...|++++|++.+++. + ..|+ ..++..+...+...|++++|+.+++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444555555555555555555443 1 1121 34455566666666666666666666654
No 227
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.58 E-value=0.015 Score=48.59 Aligned_cols=88 Identities=17% Similarity=0.096 Sum_probs=67.6
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 007871 452 DLLSRAGELEQALNIVESM-PMKP------NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524 (586)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~~-~~~p------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 524 (586)
.-+...|++++|..-|..+ ..-| ....|..-..++.+.+.++.|+.-..++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 4455677777777766654 1111 23455555667888999999999999999999998888888899999999
Q ss_pred CchHHHHHHHHHHhC
Q 007871 525 MWEHALRIRKMMRKR 539 (586)
Q Consensus 525 ~~~~A~~~~~~m~~~ 539 (586)
++++|++-|+++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999988764
No 228
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.55 E-value=0.012 Score=54.84 Aligned_cols=128 Identities=12% Similarity=-0.005 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHhccCChhHHHHHHHHHH----HcCC-CCch
Q 007871 273 FSWSIMIDGYAQHGNPKEALYLFREML----CQGVR-PDVISVMGAISACAQVGALDLGKWIHVFMK----RSRI-TMDM 342 (586)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~m~----~~g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~ 342 (586)
..|..|...|.-.|+++.|+...+.-+ +-|-. .....+..+.+++.-.|+++.|.+.|+... +.|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 445556666666777777776554322 11211 122456667777777788888777766542 3331 2234
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC---------CCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007871 343 IVQTALIDMYMKCGSLDEARRIFYSMTK---------KNVISYNVMIAGLGMNGFGEEALKCFAQME 400 (586)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 400 (586)
....+|...|.-..++++|+..+.+-.. -...++-+|..+|...|..++|+.+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4556677777777778888777764431 234567777778888888888877666544
No 229
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.44 E-value=1.1 Score=44.64 Aligned_cols=181 Identities=15% Similarity=0.075 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007871 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKK---NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418 (586)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 418 (586)
..+|...+..-...|+.+.+.-+|+...-| -...|-..+.-....|+.+-|..++....+--++-.+.+-..-..-+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 446666777777788888888888877643 23445555555555588888888777666543333332222222234
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHH----HHHHHHHH-HHhc
Q 007871 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL---NIVESM-PMKPNLA----LWGTLLLA-CRNH 489 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~----~~~~l~~~-~~~~ 489 (586)
-..|+++.|..+++.+..+ .+--...-..-+....+.|+.+.+. +++... ..+-+.. .+...... +.-.
T Consensus 377 e~~~n~~~A~~~lq~i~~e--~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE--YPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HhhccHHHHHHHHHHHHhh--CCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 4578999999999999884 4223333334455667888888887 444443 1122222 22222222 4557
Q ss_pred CChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 007871 490 QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524 (586)
Q Consensus 490 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 524 (586)
++.+.|..++.++.+..|++...|..++.....++
T Consensus 455 ~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 89999999999999999999999999988877665
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.39 E-value=0.046 Score=48.72 Aligned_cols=93 Identities=18% Similarity=0.144 Sum_probs=56.7
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCC---hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcC
Q 007871 419 SHSGLATEGYRIFQSMKRHCGIEPK---LEHYSCLVDLLSRAGELEQALNIVESM----PMKP-NLALWGTLLLACRNHQ 490 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~ 490 (586)
.+.|++..|...|...++ +++-+ ...+-.|+.++...|++++|..+|..+ +..| -+..+.-+..+..+.|
T Consensus 152 ~ksgdy~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~ 229 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG 229 (262)
T ss_pred HHcCCHHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence 345566777777666666 33332 334555666777777777776666554 2223 3455556666666777
Q ss_pred ChHHHHHHHHHHHhcCCCCcchH
Q 007871 491 NVTLAEVVVEGLVELKADDCGLY 513 (586)
Q Consensus 491 ~~~~a~~~~~~~~~~~p~~~~~~ 513 (586)
+.++|...|+++.+..|..+.+-
T Consensus 230 ~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 230 NTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred CHHHHHHHHHHHHHHCCCCHHHH
Confidence 77777777777777777665443
No 231
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.37 E-value=0.63 Score=40.91 Aligned_cols=177 Identities=13% Similarity=0.020 Sum_probs=78.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 007871 278 MIDGYAQHGNPKEALYLFREMLCQGV--RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355 (586)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~~m~~~g~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 355 (586)
....+...|++.+|...|+++..... +-.......++.++.+.|+++.|...++..++.-......-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 34455566777777777777665421 1112233445556666667777766666665553222211122122221111
Q ss_pred CCHHHHHHHHhccCCCC-------HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHH
Q 007871 356 GSLDEARRIFYSMTKKN-------VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428 (586)
Q Consensus 356 g~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 428 (586)
....... ....| ...+..++.-|=......+|...+..+... . ...-..+..-|.+.|.+..|.
T Consensus 91 ~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 91 KQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT-HHHHH
T ss_pred HhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHcccHHHHH
Confidence 1111100 00111 112334444444444555555444443321 0 011122445567777777777
Q ss_pred HHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHH
Q 007871 429 RIFQSMKRHCGIEP-KLEHYSCLVDLLSRAGELEQA 463 (586)
Q Consensus 429 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 463 (586)
.-++.+.+++.-.+ .......++.+|.+.|..+.|
T Consensus 162 ~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 162 IRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 77777777421111 123445566777777776644
No 232
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.30 E-value=0.066 Score=49.31 Aligned_cols=162 Identities=15% Similarity=0.057 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCH---HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCC----CChHH
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMET-EGIPKDD---LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE----PKLEH 446 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~-~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~ 446 (586)
.|..+..++-+.-++.+++.+-+.-.. .|..|.. .....+..++...+.++++++.|+...+-..-. ....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444555555555555565555443332 2233311 234445666677777888888888776521111 12456
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhcC------CC
Q 007871 447 YSCLVDLLSRAGELEQALNIVESM-------PMKPNL-----ALWGTLLLACRNHQNVTLAEVVVEGLVELK------AD 508 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~ 508 (586)
+-.|...|.+..++++|..+..+. ..+.-. .....+.-++...|....|.+..+++.++. |.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 777888888888888776665443 222212 222334456778888888888888877742 33
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 509 DCGLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 509 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
.......++++|...|+.+.|..-|+..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 4455667888888888888887777664
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.24 E-value=0.3 Score=49.16 Aligned_cols=117 Identities=13% Similarity=-0.003 Sum_probs=77.0
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCChHH
Q 007871 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM-K-----PNLALWGTLLLACRNHQNVTL 494 (586)
Q Consensus 421 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~l~~~~~~~~~~~~ 494 (586)
..+.+.|.+++..+.+ .+|.+....-.-++.+...|++++|++.|++... + ....++-.++..+.-..+|++
T Consensus 246 ~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 4566778888888777 3333333333345667777888888888876521 1 133445566667777888888
Q ss_pred HHHHHHHHHhcCCCCcchHHH-HHHHHHhcCCc-------hHHHHHHHHHHhC
Q 007871 495 AEVVVEGLVELKADDCGLYVL-LSNIYADAGMW-------EHALRIRKMMRKR 539 (586)
Q Consensus 495 a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~-------~~A~~~~~~m~~~ 539 (586)
|...+.++.+.+.-+..+|.- .+-++...|+. ++|.+++.+....
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 888888888876555544444 45557777887 7788887776543
No 234
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.24 E-value=1.5 Score=43.86 Aligned_cols=120 Identities=13% Similarity=-0.007 Sum_probs=66.0
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHH-
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP--MKPNLALWGTLLLA- 485 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~- 485 (586)
.+|...+.--...|+.+...-.|+++.- .+..-...|-..++-....|+.+-|..++.... ..|+......+-..
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4555555555666777777766666644 223334445555555555566666666655441 11222222222222
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 007871 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 530 (586)
+...|+++.|..+++.+.+.-|.....-..-+....+.|+.+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 344567777777777776655665555555555666666666666
No 235
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=1.7 Score=44.55 Aligned_cols=335 Identities=14% Similarity=0.106 Sum_probs=158.4
Q ss_pred HhCCCCCCcccHHH-----HHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---ChhHHHHHhccCCC
Q 007871 104 KRKGLLVDNYTYPF-----VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCG---HMGCARSVFEGSEI 175 (586)
Q Consensus 104 ~~~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~ 175 (586)
..-|++.+..-|.. +|.-+...+.+..|.++-..+...-... ..+|.....-+.+.. +-+.+..+-+++..
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 34567766666654 4555666778888888877765422222 566777776666653 23334444444444
Q ss_pred --CChhhHHHHHHHHHhCCChhHHHHHHhhCCCC--------ChhHHHHHHHHHhhccCCHHHHHHHHHhCCCC-ChhHH
Q 007871 176 --KDLVSWNLVLRGFVECGEMGKAREVFDEMPQK--------DAISWSIMIDGYRKKKGDISSARILFEHMPIK-DLISW 244 (586)
Q Consensus 176 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~-~~~~~ 244 (586)
....+|..+.+.....|+++-|..+++.=... +...+...+.-+ ...|+.+....++-.+... +...+
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka-ies~d~~Li~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA-IESGDTDLIIQVLLHLKNKLNRSSL 581 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHH
Confidence 35567888888888888888888887653311 111112222222 3333333333332222110 00000
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHhCCCchHHHHHHH--HHH----HCCCCCCHHHHHHHHHHH
Q 007871 245 NSMIDGYAKIGDLVAAQQLFNEMPE-RNVFSWSIMIDGYAQHGNPKEALYLFR--EML----CQGVRPDVISVMGAISAC 317 (586)
Q Consensus 245 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~--~m~----~~g~~~~~~~~~~l~~~~ 317 (586)
+.-..+...|..+|.+..+ .|..+ +-..|- .++-..++..|. ... ..|..|+ ......++
T Consensus 582 ------~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~ 648 (829)
T KOG2280|consen 582 ------FMTLRNQPLALSLYRQFMRHQDRAT---LYDFYN-QDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAF 648 (829)
T ss_pred ------HHHHHhchhhhHHHHHHHHhhchhh---hhhhhh-cccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHH
Confidence 0111122223333333222 11100 011111 122112221111 100 0122222 22233344
Q ss_pred hccCChhH---H-------HHHHHHHH-HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhc
Q 007871 318 AQVGALDL---G-------KWIHVFMK-RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386 (586)
Q Consensus 318 ~~~~~~~~---a-------~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 386 (586)
++.....- + ..+.+.+. +.|.....-+.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++..
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~ 728 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADI 728 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhh
Confidence 43332111 1 11111111 1122222223333344445567777777777777767777777777777777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 007871 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466 (586)
Q Consensus 387 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 466 (586)
+++++-+++-+.+. .+.-|.-+..+|.+.|+.++|.+++-++.. . . ..+.+|.+.|++.+|.+.
T Consensus 729 ~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---l---~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 729 KKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---L---Q----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---h---H----HHHHHHHHhccHHHHHHH
Confidence 77766655544322 134456667777777777777776655422 1 1 456667777777776665
Q ss_pred HHh
Q 007871 467 VES 469 (586)
Q Consensus 467 ~~~ 469 (586)
--+
T Consensus 793 A~~ 795 (829)
T KOG2280|consen 793 AAE 795 (829)
T ss_pred HHH
Confidence 433
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.55 Score=42.56 Aligned_cols=172 Identities=12% Similarity=0.017 Sum_probs=112.5
Q ss_pred HHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhh
Q 007871 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC 438 (586)
Q Consensus 359 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 438 (586)
+...++++++..+....-..-.......|++.+|..+|+..... .+-+......+..+|...|+.+.|..++..+-.+
T Consensus 120 sqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~-~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~- 197 (304)
T COG3118 120 SQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQA-APENSEAKLLLAECLLAAGDVEAAQAILAALPLQ- 197 (304)
T ss_pred HHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHh-CcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-
Confidence 34555555555442222223334566788889999988888774 2333466777888889999999999998876542
Q ss_pred CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCcchHH
Q 007871 439 GIEPK-LEHYSCLVDLLSRAGELEQALNIVESMPMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELK--ADDCGLYV 514 (586)
Q Consensus 439 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~ 514 (586)
...+ ......-+..+.+.....+...+-.+....| |...-..+...+...|+.+.|.+.+-.+++.+ -.+.....
T Consensus 198 -~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk 276 (304)
T COG3118 198 -AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARK 276 (304)
T ss_pred -chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHH
Confidence 1111 1122233455555555555555555554455 66777777888889999999998888887764 66788888
Q ss_pred HHHHHHHhcCCchHHHHHH
Q 007871 515 LLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 515 ~l~~~~~~~g~~~~A~~~~ 533 (586)
.++.++.-.|.-+.+...+
T Consensus 277 ~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 277 TLLELFEAFGPADPLVLAY 295 (304)
T ss_pred HHHHHHHhcCCCCHHHHHH
Confidence 8888888888665544433
No 237
>PRK15331 chaperone protein SicA; Provisional
Probab=96.20 E-value=0.13 Score=42.36 Aligned_cols=92 Identities=9% Similarity=-0.053 Sum_probs=54.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCC
Q 007871 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459 (586)
Q Consensus 380 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (586)
..-+...|++++|..+|+-+...+ .-+..-+..|..+|-..+++++|...|..... .. ..|+..+-..+.+|...|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHhCC
Confidence 334456677777777777665532 22334455555566667777777777776655 12 3344445556677777777
Q ss_pred HHHHHHHHHhCCCCC
Q 007871 460 LEQALNIVESMPMKP 474 (586)
Q Consensus 460 ~~~A~~~~~~~~~~p 474 (586)
.+.|...|+....+|
T Consensus 121 ~~~A~~~f~~a~~~~ 135 (165)
T PRK15331 121 AAKARQCFELVNERT 135 (165)
T ss_pred HHHHHHHHHHHHhCc
Confidence 777777776654333
No 238
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.19 E-value=1.2 Score=42.16 Aligned_cols=109 Identities=11% Similarity=0.111 Sum_probs=83.7
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 489 (586)
+.+.-+.-|...|+...|.++..+ +.+ |+...|...+++|+..|+|++-.++... +-.+.-|..++.+|.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~----Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKE----FKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHH----cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 455556667778888877766544 344 7888899999999999999998877654 23457788899999999
Q ss_pred CChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 007871 490 QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535 (586)
Q Consensus 490 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 535 (586)
|+..+|..+..++ .+..-+..|.+.|+|.+|.+.--+
T Consensus 251 ~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 251 GNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999988872 125677889999999999776433
No 239
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=2 Score=44.38 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=45.6
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007871 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490 (586)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~ 490 (586)
....+..|.+.|-+++-.-++.+|-. +..+|.-.--+.++.++|+++.++ ..|...|..|+..+...-
T Consensus 637 lekA~eiC~q~~~~~E~VYlLgrmGn---------~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldkP 704 (846)
T KOG2066|consen 637 LEKALEICSQKNFYEELVYLLGRMGN---------AKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDKP 704 (846)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHhhcc---------hHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCc
Confidence 34445556666666666666655522 233444444466677777777665 358889999998877766
Q ss_pred ChHHHH
Q 007871 491 NVTLAE 496 (586)
Q Consensus 491 ~~~~a~ 496 (586)
.+-.++
T Consensus 705 e~~~~l 710 (846)
T KOG2066|consen 705 EFIKAL 710 (846)
T ss_pred HHHHHH
Confidence 655554
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.13 E-value=0.051 Score=48.47 Aligned_cols=93 Identities=15% Similarity=0.109 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---cchHHHHH
Q 007871 446 HYSCLVDLLSRAGELEQALNIVESM----PMK-PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD---CGLYVLLS 517 (586)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 517 (586)
.|+.-+. +.+.|++.+|...|... +.. -.+..+..|..++...|++++|...|..+.+..|.+ |..+..|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 5665555 44778899999998776 211 133445558899999999999999999999977665 56788899
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 007871 518 NIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 518 ~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.+..+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 241
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.12 E-value=2.7 Score=45.66 Aligned_cols=54 Identities=11% Similarity=0.186 Sum_probs=28.5
Q ss_pred HHHHHHhCCChhHHHHHHhhCC-------CCChhHHHHHHHHHhhccCCHHHHHHHHHhCC
Q 007871 184 VLRGFVECGEMGKAREVFDEMP-------QKDAISWSIMIDGYRKKKGDISSARILFEHMP 237 (586)
Q Consensus 184 l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~ 237 (586)
-++-++..+++.+|+.+.++-+ +-+...|..-+.++....++.+.-..++-.+.
T Consensus 683 ~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk 743 (1265)
T KOG1920|consen 683 KVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELK 743 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcc
Confidence 3455666667777776666554 22333333334444345555555555555554
No 242
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.03 E-value=0.047 Score=52.63 Aligned_cols=63 Identities=17% Similarity=0.080 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PMKPNL----ALWGTLLLACRNHQNVTLAEVVVEGLVEL 505 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 505 (586)
+...++.++.+|...|++++|+..|++. ...|+. ..|..+..+|...|+.++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445555555555555555555555553 334432 23555555555556666666666655554
No 243
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.02 E-value=0.083 Score=43.66 Aligned_cols=72 Identities=25% Similarity=0.316 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH----hhCCCCChHHH
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR----HCGIEPKLEHY 447 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~ 447 (586)
....++..+...|++++|..+++++... -+-+...+..++.+|...|+...|.++|+.+.+ +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3444556666777777777777777763 233456777777777777777777777776543 35777776654
No 244
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.95 E-value=0.13 Score=40.82 Aligned_cols=50 Identities=10% Similarity=0.187 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 007871 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453 (586)
Q Consensus 404 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (586)
..|+..+...++.+|+..|++..|.++++...+.++++.+...|..|++-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 55666666777777766677777777777766666666666666666543
No 245
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.91 E-value=1.2 Score=42.59 Aligned_cols=75 Identities=15% Similarity=0.040 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCC-------ChhHHHHHHHHHHh---CCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 007871 243 SWNSMIDGYAKIGDLVAAQQLFNEMPER-------NVFSWSIMIDGYAQ---HGNPKEALYLFREMLCQGVRPDVISVMG 312 (586)
Q Consensus 243 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~~~~~~~~~ 312 (586)
+...++-.|-...+++...++++.+... ....-....-++-+ .|+.++|+.++..+......+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3334445566667777777777776652 11222223344445 6778888888877665555677777776
Q ss_pred HHHHH
Q 007871 313 AISAC 317 (586)
Q Consensus 313 l~~~~ 317 (586)
+...|
T Consensus 223 ~GRIy 227 (374)
T PF13281_consen 223 LGRIY 227 (374)
T ss_pred HHHHH
Confidence 66554
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.36 Score=44.19 Aligned_cols=161 Identities=12% Similarity=0.002 Sum_probs=113.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHH----HHHHHHhhcCC
Q 007871 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS----CLVDLLSRAGE 459 (586)
Q Consensus 384 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~ 459 (586)
--.|+..+|-..|+++.+. .+.|...+...=.+|...|+...-...++++.. ...++...|. .+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 4467888888888888874 566767777777888889998888888888877 3455554443 34455668899
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcCCchHHHHHH
Q 007871 460 LEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD----DCGLYVLLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 460 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~ 533 (586)
+++|++.-++. .+.| |.-.-.+....+.-.|+..++.++..+-...=.. -..-|-..+-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999988887 3333 4555566666678888999998887765442111 1223555666788889999999999
Q ss_pred HHHHhCCCccCCCe
Q 007871 534 KMMRKRKIKKETGR 547 (586)
Q Consensus 534 ~~m~~~~~~~~~~~ 547 (586)
++=.-...+.+.+.
T Consensus 271 D~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 271 DREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHhhccchh
Confidence 88655555555553
No 247
>PRK11906 transcriptional regulator; Provisional
Probab=95.74 E-value=0.23 Score=48.14 Aligned_cols=143 Identities=8% Similarity=0.067 Sum_probs=87.0
Q ss_pred ChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHhhc---------cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh
Q 007871 388 FGEEALKCFAQMET-EGIPKDD-LIFLGVLIACSH---------SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456 (586)
Q Consensus 388 ~~~~A~~~~~~m~~-~g~~p~~-~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 456 (586)
..+.|+.+|.+... ....|+. ..|..+..++.. ..+..+|.++-++..+ --+.|+.....++.++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 34667778888772 2256654 456555554422 1234455566555555 344566777777777777
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHH--HHHhcCCchHHHHH
Q 007871 457 AGELEQALNIVESM-PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSN--IYADAGMWEHALRI 532 (586)
Q Consensus 457 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~ 532 (586)
.|+++.|...|++. ...|| ...|......+.-.|+.++|.+.++++.+++|....+-..-.+ .|+.. ..++|+.+
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 77788888888776 34454 4555555555667778888888888888887776544433333 34443 34556655
Q ss_pred H
Q 007871 533 R 533 (586)
Q Consensus 533 ~ 533 (586)
|
T Consensus 430 ~ 430 (458)
T PRK11906 430 Y 430 (458)
T ss_pred H
Confidence 5
No 248
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.69 E-value=0.78 Score=37.47 Aligned_cols=126 Identities=9% Similarity=0.057 Sum_probs=72.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh
Q 007871 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456 (586)
Q Consensus 377 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 456 (586)
..++..+...+.+.....+++.+...| ..+....+.++..|++.+ .......+.. . .+.......++.+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHHHH
Confidence 345566666667777777777777665 355566777777776543 2333333331 1 122223346666777
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007871 457 AGELEQALNIVESMPMKPNLALWGTLLLACRNH-QNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522 (586)
Q Consensus 457 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 522 (586)
.+.++++..++.+++. +...+..+... ++.+.|.+++.+ +.++..|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 7777777777777652 22233333333 677777777665 3356677776665543
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=95.68 E-value=0.65 Score=45.17 Aligned_cols=140 Identities=12% Similarity=0.033 Sum_probs=86.2
Q ss_pred HHHHHHHHhccC---CCC---HhHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 007871 358 LDEARRIFYSMT---KKN---VISYNVMIAGLGMN---------GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422 (586)
Q Consensus 358 ~~~a~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 422 (586)
.+.|..+|.+.. +-| ...|..+...+... ....+|.++-++..+.+ +-|+.....+..+....|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 567777887776 323 34555544443221 23345666777777743 446667777777777777
Q ss_pred CHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh-CCCCCCHH---HHHHHHHHHHhcCChHHHHHH
Q 007871 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES-MPMKPNLA---LWGTLLLACRNHQNVTLAEVV 498 (586)
Q Consensus 423 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~ 498 (586)
+++.|...|++... -.|....+|........-.|+.++|.+.+++ +...|... .....+..|+. ...+.|+++
T Consensus 353 ~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHH
Confidence 88888888888866 2333456666666777778888888888887 45555432 22223334443 456666666
Q ss_pred HHH
Q 007871 499 VEG 501 (586)
Q Consensus 499 ~~~ 501 (586)
|-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 654
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.63 E-value=0.41 Score=38.44 Aligned_cols=117 Identities=20% Similarity=0.106 Sum_probs=60.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh
Q 007871 379 MIAGLGMNGFGEEALKCFAQMETEGIPK---DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455 (586)
Q Consensus 379 l~~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (586)
-.....+.|++++|.+.|+.+... .+- ....-..++.+|.+.|++++|...+++.++-+--.|+ .-|...+.++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~ 93 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHH
Confidence 344445666777777777666653 221 1234555666666667777777666666662112222 22333444433
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcch
Q 007871 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512 (586)
Q Consensus 456 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 512 (586)
.-...+..+.-+- ..+ ...+....|..-|+++++.-|++..+
T Consensus 94 ~~~~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 94 YYEQDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 3222221111111 111 11223557888888888888987754
No 251
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.63 E-value=2.9 Score=45.45 Aligned_cols=159 Identities=14% Similarity=0.087 Sum_probs=89.6
Q ss_pred CChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 007871 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271 (586)
Q Consensus 192 g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 271 (586)
+++++|+..+..+. ...|.-.++.. .+.|-+..|..++..-.+.-...|.+..+.+.....+++|--.|+..-+-
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I-~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl- 968 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYI-KKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL- 968 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHH-HhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-
Confidence 45555555555543 22223333333 55666666666665544444555666666666667777776666555431
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 007871 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS--VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349 (586)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (586)
.-.+.+|...|+|++|+.+..++... -+... -..|..-+...++.-+|-++..+.... ....+
T Consensus 969 ----ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av 1033 (1265)
T KOG1920|consen 969 ----EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAV 1033 (1265)
T ss_pred ----HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHH
Confidence 12346677778888887777665421 12211 134556666777777777666655433 23345
Q ss_pred HHHHhcCCHHHHHHHHhccCC
Q 007871 350 DMYMKCGSLDEARRIFYSMTK 370 (586)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~ 370 (586)
..|++...|++|..+-....+
T Consensus 1034 ~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1034 ALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred HHHhhHhHHHHHHHHHHhccc
Confidence 556666777777777655543
No 252
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.53 E-value=1.7 Score=38.88 Aligned_cols=84 Identities=23% Similarity=0.228 Sum_probs=36.2
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 007871 454 LSRAGELEQALNIVESM-PMKP--NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530 (586)
Q Consensus 454 ~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 530 (586)
+...++.+.+...+.+. ...+ ....+..+...+...++++.+...+.......|.....+..+...+...|.++++.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEAL 256 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHH
Confidence 33444444444444433 1111 13333444444444444555555555555544443333444444444444444444
Q ss_pred HHHHHHH
Q 007871 531 RIRKMMR 537 (586)
Q Consensus 531 ~~~~~m~ 537 (586)
..+.+..
T Consensus 257 ~~~~~~~ 263 (291)
T COG0457 257 EALEKAL 263 (291)
T ss_pred HHHHHHH
Confidence 4444443
No 253
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.43 E-value=0.77 Score=45.55 Aligned_cols=152 Identities=13% Similarity=0.085 Sum_probs=75.1
Q ss_pred HHhcCChhHHHHHhc--cCCC-CChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHH
Q 007871 157 YSKCGHMGCARSVFE--GSEI-KDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILF 233 (586)
Q Consensus 157 ~~~~g~~~~a~~~~~--~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~ 233 (586)
..-.|+++.+.++.. ++.+ -...-.+.+++-+-+.|.++.|+.+... . ..-+... .+.|+++.|.++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLA-l~lg~L~~A~~~a 341 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELA-LQLGNLDIALEIA 341 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHH-HHCT-HHHHHHHC
T ss_pred HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHH-HhcCCHHHHHHHH
Confidence 334566666433332 1111 0233466667777777777777776442 1 1122222 4566666666665
Q ss_pred HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 007871 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313 (586)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l 313 (586)
+... +...|..|.+...++|+++-|++.|.+..+ |..|+-.|...|+.+.-.++.+.....| -++..
T Consensus 342 ~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~a 408 (443)
T PF04053_consen 342 KELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIA 408 (443)
T ss_dssp CCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHH
T ss_pred HhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHH
Confidence 5543 455666677777777777777766666653 4444555556666665555555555444 13334
Q ss_pred HHHHhccCChhHHHHHH
Q 007871 314 ISACAQVGALDLGKWIH 330 (586)
Q Consensus 314 ~~~~~~~~~~~~a~~~~ 330 (586)
..++.-.|+.++...++
T Consensus 409 f~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 409 FQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHT-HHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 44444445555444443
No 254
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.26 E-value=0.056 Score=31.18 Aligned_cols=32 Identities=25% Similarity=0.163 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007871 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509 (586)
Q Consensus 478 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 509 (586)
.+..+...+...|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 44555666666677777777777776666654
No 255
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.25 E-value=2.1 Score=38.20 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=44.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcch---HHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGL---YVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
+...|.+.|.+..|..-++.+++.-|+.... +..+..+|...|-.++|...-.-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 4455889999999999999999987766554 55567789999999999887765533
No 256
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.23 E-value=2.1 Score=38.20 Aligned_cols=198 Identities=16% Similarity=0.054 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCH-hHHHHHHH-
Q 007871 307 VISVMGAISACAQVGALDLGKWIHVFMKRS-RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--KNV-ISYNVMIA- 381 (586)
Q Consensus 307 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~l~~- 381 (586)
...+......+...+....+...+...... ........+......+...+++..+.+.+..... ++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344455555555666666666555555432 2233344455555566666667777777766553 221 22222333
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhh
Q 007871 382 GLGMNGFGEEALKCFAQMETEGIPK----DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP-KLEHYSCLVDLLSR 456 (586)
Q Consensus 382 ~~~~~~~~~~A~~~~~~m~~~g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 456 (586)
.+...|+++.|...+.+... ..| ....+......+...++.+.+...+..... ..+. ....+..+...+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHH
Confidence 67888899999999988855 333 233444444456778899999999999887 3444 46778888889999
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007871 457 AGELEQALNIVESM-PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508 (586)
Q Consensus 457 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 508 (586)
.++++.|...+... ...|+ ...+......+...+.++.+...+.+.....|.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999988877 33344 445555555555777899999999999998887
No 257
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.14 E-value=2.1 Score=40.00 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=25.2
Q ss_pred HhhccCCHHHHHHHHHHhHHh---hCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 007871 417 ACSHSGLATEGYRIFQSMKRH---CGIEP-KLEHYSCLVDLLSRAGELEQALNIVES 469 (586)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 469 (586)
++...|....|.+.-++..+- .|..+ .......+.++|...|+.+.|+.-|++
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 444455555555544444331 12222 223344455666666666665555543
No 258
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.93 E-value=2.4 Score=37.28 Aligned_cols=25 Identities=4% Similarity=-0.061 Sum_probs=15.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHH
Q 007871 275 WSIMIDGYAQHGNPKEALYLFREML 299 (586)
Q Consensus 275 ~~~l~~~~~~~~~~~~A~~~~~~m~ 299 (586)
|..-..+|...+++++|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4444556666666777666666555
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.89 E-value=0.37 Score=37.51 Aligned_cols=90 Identities=17% Similarity=0.096 Sum_probs=45.5
Q ss_pred HhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcC
Q 007871 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM----PMKPN--LALWGTLLLACRNHQ 490 (586)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~~ 490 (586)
++...|+.+.|++.|.+... -.+.....||.-..++.-+|+.++|++-+++. +.+.. ...|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 44556666666666666555 33445555666666666666666665555544 11111 111222222245555
Q ss_pred ChHHHHHHHHHHHhcCCC
Q 007871 491 NVTLAEVVVEGLVELKAD 508 (586)
Q Consensus 491 ~~~~a~~~~~~~~~~~p~ 508 (586)
+.+.|..-|+.+.+++..
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 555665555555555533
No 260
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.89 E-value=0.059 Score=31.15 Aligned_cols=31 Identities=19% Similarity=0.009 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007871 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508 (586)
Q Consensus 478 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 508 (586)
.|..+...+...|++++|+..++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666666664
No 261
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.88 E-value=1.3 Score=43.93 Aligned_cols=158 Identities=12% Similarity=0.107 Sum_probs=100.1
Q ss_pred HHHHHhCCChhHHHHHHh--hCC-CCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 007871 185 LRGFVECGEMGKAREVFD--EMP-QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQ 261 (586)
Q Consensus 185 ~~~~~~~g~~~~A~~~~~--~~~-~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 261 (586)
.....-.|+++++..+.+ .+. .-.....+.++.-+ .+.|..+.|..+-.. + ..-.....+.|+++.|.
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL-~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFL-EKKGYPELALQFVTD-----P---DHRFELALQLGNLDIAL 338 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHH-HHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHH
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHH-HHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHH
Confidence 345566888888766665 222 11233355555555 888988888877543 2 23345567889999999
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCc
Q 007871 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341 (586)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 341 (586)
++.++.. +...|..|.....+.|+++-|...|.+.. -+..++-.|.-.|+.+...++.+.....|-
T Consensus 339 ~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--- 404 (443)
T PF04053_consen 339 EIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD--- 404 (443)
T ss_dssp HHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred HHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC---
Confidence 8877776 56689999999999999999999888743 245566667777888777777777766652
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007871 342 MIVQTALIDMYMKCGSLDEARRIFYSM 368 (586)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 368 (586)
++....++.-.|+.++..+++.+.
T Consensus 405 ---~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 ---INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 455555666678888777776544
No 262
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.87 E-value=1 Score=45.31 Aligned_cols=116 Identities=16% Similarity=-0.024 Sum_probs=59.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHhhccCCHHHHHHHHHHhHHh-hCC-CCChHHHHHHHHHHhhcCCHHHH
Q 007871 387 GFGEEALKCFAQMETEGIPKDDLIFLGV-LIACSHSGLATEGYRIFQSMKRH-CGI-EPKLEHYSCLVDLLSRAGELEQA 463 (586)
Q Consensus 387 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A 463 (586)
.+.+.|.++++.+.. .-|+...|... .+.+...|+.++|.+.|+.+... ... +.....+-.++.++.-.+++++|
T Consensus 247 ~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 345666666666666 34554433332 23345566677777776654320 011 11223344555666667777777
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHH-HHhcCCh-------HHHHHHHHHHHh
Q 007871 464 LNIVESMPM--KPNLALWGTLLLA-CRNHQNV-------TLAEVVVEGLVE 504 (586)
Q Consensus 464 ~~~~~~~~~--~p~~~~~~~l~~~-~~~~~~~-------~~a~~~~~~~~~ 504 (586)
.+.+..+.. +-+...|..+..+ +...|+. ++|.++++++..
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 777666621 1223333333333 3445555 666666665554
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.83 E-value=3.9 Score=40.23 Aligned_cols=59 Identities=10% Similarity=0.156 Sum_probs=33.2
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 412 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
..+..++.+.|+.++|.+.++++.+......+..+...|+.++...+.+.++..++.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 33444555666666666666666553221123345556666666666666666666655
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=0.71 Score=42.40 Aligned_cols=156 Identities=9% Similarity=-0.033 Sum_probs=109.0
Q ss_pred hcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHhhccCCHHH
Q 007871 354 KCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL----IFLGVLIACSHSGLATE 426 (586)
Q Consensus 354 ~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~g~~~~ 426 (586)
-.|+..+|-..++++.+ .|..++..--.+|...|+.+.-...+++.... ..|+.. .-..+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 35677777777777764 46777887888899999999998888888764 344443 23334445678999999
Q ss_pred HHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHH
Q 007871 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN------LALWGTLLLACRNHQNVTLAEVVVE 500 (586)
Q Consensus 427 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~ 500 (586)
|++.-++..+ -.+.|.-...++...+.-.|++.++.++..+-...-+ ...|-...-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9998888766 2344666777788888899999999999887632211 1222233334567799999999998
Q ss_pred HHH--hcCCCCcch
Q 007871 501 GLV--ELKADDCGL 512 (586)
Q Consensus 501 ~~~--~~~p~~~~~ 512 (586)
+=+ +++.+|...
T Consensus 272 ~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 272 REIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHhhccchhh
Confidence 643 345666643
No 265
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.73 E-value=0.44 Score=37.82 Aligned_cols=94 Identities=16% Similarity=0.157 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007871 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486 (586)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 486 (586)
|..++..++.++++.|+.+....+++.. .|+.++...- .+. +-..-+..|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~---------~~~------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKK---------EGD------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCccc---------cCc------cCCCCCCCCCHHHHHHHHHHH
Confidence 3456777777777777777777776544 2332221100 000 000112346666777777777
Q ss_pred HhcCChHHHHHHHHHHHhcC--CCCcchHHHHHH
Q 007871 487 RNHQNVTLAEVVVEGLVELK--ADDCGLYVLLSN 518 (586)
Q Consensus 487 ~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~ 518 (586)
...|++..|.++++...+.. |.+..+|..|..
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77777777777777666654 333445555443
No 266
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.69 E-value=1.4 Score=35.92 Aligned_cols=87 Identities=11% Similarity=0.141 Sum_probs=50.2
Q ss_pred CchhHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcC
Q 007871 11 LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQS 90 (586)
Q Consensus 11 ~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~ 90 (586)
....++..+...+.+......++.+++.+ ..++...+.++. .|++. +..+..+.+.. .++......+++.|.+.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~-ly~~~--~~~~ll~~l~~--~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIE-LYAKY--DPQKEIERLDN--KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHH-HHHHH--CHHHHHHHHHh--ccccCCHHHHHHHHHHc
Confidence 34455666666666777777777776665 356666667776 66655 44455555442 23334444556666666
Q ss_pred CCchhHHHHHHHh
Q 007871 91 SNPQKALSFYVNM 103 (586)
Q Consensus 91 ~~~~~A~~~~~~m 103 (586)
+-++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 6566666555544
No 267
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.53 E-value=0.23 Score=38.63 Aligned_cols=89 Identities=17% Similarity=0.072 Sum_probs=60.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC--hHHHHHHHHHHhhcC
Q 007871 381 AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK--LEHYSCLVDLLSRAG 458 (586)
Q Consensus 381 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 458 (586)
-+....|+.+.|++.|.+.+.. .+.+...|+.-..++.-+|+.++|+.=+++..+-.|-.-. ...|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3566778888888888887773 3445677888888888888888888888877763233211 123444455677778
Q ss_pred CHHHHHHHHHhC
Q 007871 459 ELEQALNIVESM 470 (586)
Q Consensus 459 ~~~~A~~~~~~~ 470 (586)
+.+.|..-|+..
T Consensus 130 ~dd~AR~DFe~A 141 (175)
T KOG4555|consen 130 NDDAARADFEAA 141 (175)
T ss_pred chHHHHHhHHHH
Confidence 888877777654
No 268
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.49 E-value=7.4 Score=40.82 Aligned_cols=172 Identities=12% Similarity=0.006 Sum_probs=107.2
Q ss_pred hccCCCCChHHHHHHHhccCCCCcc---hHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchH
Q 007871 54 LTSPNTLNMDQAERLFNQIYQPNTY---MHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130 (586)
Q Consensus 54 ~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 130 (586)
++.+. .-++-|..+-+.-..+... ..-....-+.+.|++++|...|-+-... +.| ..++.-+.....+..
T Consensus 343 iL~kK-~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~Ikn 415 (933)
T KOG2114|consen 343 ILFKK-NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKN 415 (933)
T ss_pred HHHHh-hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHH
Confidence 33344 4566666666544222111 2223345556889999999888766543 233 245666666667777
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhh--HHHHHHHHHhCCChhHHHHHHhhCCCCC
Q 007871 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS--WNLVLRGFVECGEMGKAREVFDEMPQKD 208 (586)
Q Consensus 131 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 208 (586)
-..+++.+.+.|+.. ..--..|+.+|.+.++.+.-.+..+.... ..+. ....+..+.+.+-.++|..+-.+... .
T Consensus 416 Lt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-h 492 (933)
T KOG2114|consen 416 LTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLATKFKK-H 492 (933)
T ss_pred HHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-C
Confidence 777888888888643 33445688999999999999888887762 2222 45566777777777777776665543 2
Q ss_pred hhHHHHHHHHHhhccCCHHHHHHHHHhCCCC
Q 007871 209 AISWSIMIDGYRKKKGDISSARILFEHMPIK 239 (586)
Q Consensus 209 ~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~ 239 (586)
......++ ...|++++|.+.++.+..+
T Consensus 493 e~vl~ill----e~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 493 EWVLDILL----EDLHNYEEALRYISSLPIS 519 (933)
T ss_pred HHHHHHHH----HHhcCHHHHHHHHhcCCHH
Confidence 23333333 3447777777777776543
No 269
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.41 E-value=1.9 Score=37.66 Aligned_cols=78 Identities=12% Similarity=0.083 Sum_probs=45.1
Q ss_pred HHHHHHhhc-CCHHHHHHHHHhCC-----CCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 007871 449 CLVDLLSRA-GELEQALNIVESMP-----MKPNL---ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519 (586)
Q Consensus 449 ~l~~~~~~~-g~~~~A~~~~~~~~-----~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 519 (586)
.+...|... .+++.|+..|+... ...+. .++.-+...-...+++.+|+.+|+++....-+|+..-..+-.-
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 344555444 56666666666551 11122 2222233334567889999999999888777776665555555
Q ss_pred HHhcCCc
Q 007871 520 YADAGMW 526 (586)
Q Consensus 520 ~~~~g~~ 526 (586)
+.+.|--
T Consensus 198 flkAgLC 204 (288)
T KOG1586|consen 198 FLKAGLC 204 (288)
T ss_pred HHHHHHH
Confidence 5555543
No 270
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.36 E-value=0.24 Score=45.02 Aligned_cols=57 Identities=23% Similarity=0.202 Sum_probs=32.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 481 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
.++..+...|+++.+...++++...+|-+...|..++.+|.+.|+...|+..|+.+.
T Consensus 158 ~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 158 KLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555555543
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.08 E-value=0.11 Score=30.56 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=20.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 512 LYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 512 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
++..|+.+|.+.|+|++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36788889999999999999998854
No 272
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.03 E-value=3.6 Score=35.53 Aligned_cols=161 Identities=16% Similarity=0.120 Sum_probs=83.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHH
Q 007871 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451 (586)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 451 (586)
+..||-+.--+...|+++.|.+.|+...+ +.|.- .++..-.-++.-.|++.-|.+=+...-......|-...|.-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 45677777677777888888888887776 34432 2332223344556777777766555544211112222222222
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-------cchHHHHHHHHHhcC
Q 007871 452 DLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD-------CGLYVLLSNIYADAG 524 (586)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 524 (586)
...-++.+|..-+.+--...|..-|...+-.+.- |.. ..+.+++++.+-..++ ..+|.-|+.-+...|
T Consensus 177 ---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gki-S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKI-SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhc-cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 2334566665544332223344445443333211 111 1123333333332332 235777888888888
Q ss_pred CchHHHHHHHHHHhCC
Q 007871 525 MWEHALRIRKMMRKRK 540 (586)
Q Consensus 525 ~~~~A~~~~~~m~~~~ 540 (586)
+.++|..+|+-....+
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 8888888887765543
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.00 E-value=2.6 Score=41.39 Aligned_cols=62 Identities=8% Similarity=0.059 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007871 480 GTLLLACRNHQNVTLAEVVVEGLVELKAD--DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 480 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 541 (586)
..+..++.+.|+.++|++.++++.+..|. +..+...|+.+|...+++.++..++.+-.+...
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL 326 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence 34555566667777777777777665544 345666677777777777777777766644333
No 274
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.99 E-value=0.58 Score=41.86 Aligned_cols=88 Identities=11% Similarity=0.096 Sum_probs=61.3
Q ss_pred CChhHHHHHHHHHHh-----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------------ChhHHHH
Q 007871 270 RNVFSWSIMIDGYAQ-----HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG----------------ALDLGKW 328 (586)
Q Consensus 270 ~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~----------------~~~~a~~ 328 (586)
+|-.+|-..+..+.. .+..+-....++.|.+-|+.-|..+|..+++.+-+.. +-+-+..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 444555555554432 3455556666777777777778888887777665442 3456778
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 007871 329 IHVFMKRSRITMDMIVQTALIDMYMKCGS 357 (586)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 357 (586)
++++|...|+.||-.+-..|++++++.+-
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 88999999999999888888888877664
No 275
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.96 E-value=1.7 Score=36.34 Aligned_cols=115 Identities=6% Similarity=0.060 Sum_probs=66.0
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--ChhHHHHHhccCC
Q 007871 97 LSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCG--HMGCARSVFEGSE 174 (586)
Q Consensus 97 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~ 174 (586)
.++++.+.+.+++|+...|..+++.+.+.|.+... .+++..++-+|.......+-.+.... -..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 45566666777888888888888888887765543 44455565555554443332222211 1233444444443
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHH
Q 007871 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY 219 (586)
Q Consensus 175 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~ 219 (586)
..+..++..+...|++-+|+.+.+.....+......++.+.
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA 130 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAA 130 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHH
Confidence 23556667777788888888877765433333344455544
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.95 E-value=6.5 Score=38.10 Aligned_cols=150 Identities=9% Similarity=-0.065 Sum_probs=81.2
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC--hH
Q 007871 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK---DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK--LE 445 (586)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 445 (586)
....+|..++..+.+.|.++.|...+.++...+..+ .+.....-+..+...|+..+|...++..... ....+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344567777778888888888888888777643211 2334444455566778888888887777661 11111 11
Q ss_pred HHHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 007871 446 HYSCLVDLLSRAGELEQALNI-VESMPMKPNLALWGTLLLACRNH------QNVTLAEVVVEGLVELKADDCGLYVLLSN 518 (586)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 518 (586)
....+...+.. ..+..... ........-...+..+...+... ++.+.+...|.++.+..|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111100 00000000 00000000112233333333333 78899999999999999998888888887
Q ss_pred HHHhc
Q 007871 519 IYADA 523 (586)
Q Consensus 519 ~~~~~ 523 (586)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 76543
No 277
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.83 E-value=4.4 Score=35.77 Aligned_cols=199 Identities=13% Similarity=0.065 Sum_probs=105.1
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC--HhHHHHHHHHHHhc
Q 007871 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN--VISYNVMIAGLGMN 386 (586)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~ 386 (586)
.|.....+|....++++|..-+....+. .+.+...|. ..+.++.|.-+.+++.+-+ +..|+.-...|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3445555677777788777766555432 111211111 1122344444444444321 22344556667777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhC----CCCChHHHHHHHHHHhhcCCHHH
Q 007871 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG----IEPKLEHYSCLVDLLSRAGELEQ 462 (586)
Q Consensus 387 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~ 462 (586)
|.++.|-..+++.-+ ....-++++|+++|++...-.. ...-...+....+.|.+..++++
T Consensus 105 GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 777776666655432 1122344455555554433100 01112345555667777777777
Q ss_pred HHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCcchHHHHHHHHHhcCCchHHH
Q 007871 463 ALNIVESMP-------MKPNL-ALWGTLLLACRNHQNVTLAEVVVEGLVEL----KADDCGLYVLLSNIYADAGMWEHAL 530 (586)
Q Consensus 463 A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~A~ 530 (586)
|-..+.+-. .-|+. ..+...+..+.-..|+..|+..++.-.+. .|.+......|+.+| ..|+.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 766665431 11222 33455555566677888888888876653 356666777776554 556766665
Q ss_pred HH
Q 007871 531 RI 532 (586)
Q Consensus 531 ~~ 532 (586)
.+
T Consensus 248 kv 249 (308)
T KOG1585|consen 248 KV 249 (308)
T ss_pred HH
Confidence 44
No 278
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.83 E-value=2.8 Score=34.73 Aligned_cols=121 Identities=9% Similarity=0.006 Sum_probs=65.0
Q ss_pred HccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc--CCCCcchHHHH--H---HHHhcCCCc
Q 007871 21 ISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI--YQPNTYMHNTM--I---RGYTQSSNP 93 (586)
Q Consensus 21 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l--l---~~~~~~~~~ 93 (586)
..+..++|..-|..+.+-|.-.-|.....-+..+.+.. |+...|...|+++ ..|-+....-+ + -.+..+|.+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~k-gdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQK-GDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhc-ccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34667777777777777665555554433333245555 7777777777776 11211111111 1 123456666
Q ss_pred hhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhC
Q 007871 94 QKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMG 142 (586)
Q Consensus 94 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 142 (586)
++...-.+.+-..+.+.-...-..|--+-.+.|++..|.+.|.++....
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 6666666655444322222233444445556677777777777666543
No 279
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.69 E-value=0.27 Score=45.08 Aligned_cols=96 Identities=13% Similarity=-0.037 Sum_probs=54.3
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCh
Q 007871 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP--MKPNLALWGTLLLACRNHQNV 492 (586)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~ 492 (586)
.+-|.++|.+++|+.+|...+. -.+.++.++..-..+|.+..++..|+.-.+..- .+.-...|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 4456667777777777766655 233366666666666777666666655444331 111123344444444455666
Q ss_pred HHHHHHHHHHHhcCCCCcch
Q 007871 493 TLAEVVVEGLVELKADDCGL 512 (586)
Q Consensus 493 ~~a~~~~~~~~~~~p~~~~~ 512 (586)
.+|.+-++.++++.|.+...
T Consensus 182 ~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHHhHHHHHhhCcccHHH
Confidence 66666666666677665433
No 280
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.68 E-value=0.89 Score=40.73 Aligned_cols=99 Identities=17% Similarity=0.216 Sum_probs=72.2
Q ss_pred HHHHHhccC--CCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC-----------
Q 007871 361 ARRIFYSMT--KKNVISYNVMIAGLGMN-----GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG----------- 422 (586)
Q Consensus 361 a~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----------- 422 (586)
.+..|..+. +.|-.+|.+.+..+... +..+--...++.|.+-|+.-|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344555555 46667777777766543 455556667788888888888889998888775432
Q ss_pred -----CHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCH
Q 007871 423 -----LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460 (586)
Q Consensus 423 -----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 460 (586)
+-.-++.++++|.. +|+.||.++-..|+.++++.+-.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 23457888999988 69999999999999999888753
No 281
>PRK09687 putative lyase; Provisional
Probab=93.25 E-value=7 Score=36.30 Aligned_cols=74 Identities=20% Similarity=0.160 Sum_probs=35.1
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007871 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISA 316 (586)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 316 (586)
.++..+....+.++.+.|+......+.+.+..+++ ....+.++...|+. +|+..+..+.+. .||...-...+.+
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 44555555555666666654333333333333332 23344555555553 455555555543 2344444444433
No 282
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.17 E-value=6.4 Score=38.13 Aligned_cols=69 Identities=16% Similarity=0.177 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELK----ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 474 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
....+|..+...+.+.|.++.|...+.++...+ +..+.+...-+..+...|+..+|...++........
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 356678888889999999999999999988865 225677888889999999999999999888774333
No 283
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.15 E-value=0.22 Score=30.90 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=10.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 007871 377 NVMIAGLGMNGFGEEALKCFAQMET 401 (586)
Q Consensus 377 ~~l~~~~~~~~~~~~A~~~~~~m~~ 401 (586)
..+...|...|++++|.++|++.++
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 284
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.09 E-value=5.8 Score=41.55 Aligned_cols=176 Identities=9% Similarity=0.004 Sum_probs=90.8
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHcCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCC
Q 007871 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDM--IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388 (586)
Q Consensus 311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 388 (586)
..-+..+.+..-++-|..+-+ ..+..++. .......+-+.+.|++++|...|-+...--.. ...+.-|....+
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHH
Confidence 334445555555555544432 22222221 12223333444667777777766554421111 113444555555
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCC-CChHHHHHHHHHHhhcCCHHHHHHHH
Q 007871 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE-PKLEHYSCLVDLLSRAGELEQALNIV 467 (586)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 467 (586)
..+-..+++.+.+.|+... ..-..|+.+|.+.++.++-.++.+...+ |.. -| ....+..+.+.+-.++|.-+-
T Consensus 413 IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~~--g~~~fd---~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCDK--GEWFFD---VETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCCC--cceeee---HHHHHHHHHHhChHHHHHHHH
Confidence 5666667777777765433 3345567777777777776666655432 221 12 233455556666666666665
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007871 468 ESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502 (586)
Q Consensus 468 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 502 (586)
.+... +...... .+...+++++|+++++.+
T Consensus 487 ~k~~~--he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 487 TKFKK--HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHhcc--CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 55532 2222222 245567788888777643
No 285
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.98 E-value=1.8 Score=41.97 Aligned_cols=129 Identities=10% Similarity=0.028 Sum_probs=77.1
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHH
Q 007871 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP--MKPNLALWGTLLLACRNHQNVTLAEV 497 (586)
Q Consensus 420 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~ 497 (586)
..|+.-.|-+-+....+ +.+-++.............|+++.+...+.... ......+...++......|+++.|..
T Consensus 301 ~~gd~~aas~~~~~~lr--~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALR--NQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHH--hCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34555555444444433 233333333334445566677777777665552 22345566667777777777777777
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCeeEE
Q 007871 498 VVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550 (586)
Q Consensus 498 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 550 (586)
..+.++.....++.+....+-.--..|-++++.-.++++...+.+.+.|+...
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~ 431 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNF 431 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceee
Confidence 77777776666666655555555566777777777777777666666665443
No 286
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.83 E-value=0.23 Score=28.51 Aligned_cols=31 Identities=19% Similarity=0.058 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007871 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508 (586)
Q Consensus 478 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 508 (586)
+|..+...+...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3455555566666666666666666666653
No 287
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.82 E-value=1.2 Score=36.56 Aligned_cols=95 Identities=15% Similarity=0.178 Sum_probs=48.8
Q ss_pred HHHHHHHHH---hhccCCHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHH
Q 007871 409 LIFLGVLIA---CSHSGLATEGYRIFQSMKRHCGIEPKL-EHYSCLVDLLSRAGELEQALNIVESMPMK-PNLALWGTLL 483 (586)
Q Consensus 409 ~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~ 483 (586)
.+++.|+.. -...++.+++..++..+.- +.|.. ..-..-+..+...|++.+|..+|+++... |....-..|+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 344444443 3456777777777777755 33432 22222344556777777777777777433 3333334444
Q ss_pred HHHHhcCChHHHHHHHHHHHhcC
Q 007871 484 LACRNHQNVTLAEVVVEGLVELK 506 (586)
Q Consensus 484 ~~~~~~~~~~~a~~~~~~~~~~~ 506 (586)
..|....+-..=..+.+++.+.+
T Consensus 85 A~CL~~~~D~~Wr~~A~evle~~ 107 (160)
T PF09613_consen 85 ALCLYALGDPSWRRYADEVLESG 107 (160)
T ss_pred HHHHHHcCChHHHHHHHHHHhcC
Confidence 44444333333333334444433
No 288
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.78 E-value=8.3 Score=35.89 Aligned_cols=18 Identities=17% Similarity=-0.141 Sum_probs=13.5
Q ss_pred HHhcCChHHHHHHHHHHH
Q 007871 486 CRNHQNVTLAEVVVEGLV 503 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~ 503 (586)
+.+.++|+.|..+|+-..
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 557788888888887554
No 289
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.67 E-value=5.2 Score=33.27 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=79.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHH--HHHHhhcCC
Q 007871 383 LGMNGFGEEALKCFAQMETEGIPKDDL-IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL--VDLLSRAGE 459 (586)
Q Consensus 383 ~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~ 459 (586)
+.+.+..++|+.-|..+.+.|...=+. .-..........|+...|...|+++-++..+|.-..-...| .-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 356778889999999888877554332 22233345677889999999999887742222211122222 234567788
Q ss_pred HHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 460 LEQALNIVESMPMK--P-NLALWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 460 ~~~A~~~~~~~~~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
+++...-++.+... | ....-..|..+-.+.|++.+|.++|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88888888777322 2 233345666667788999999999988876
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.51 E-value=0.24 Score=29.07 Aligned_cols=27 Identities=15% Similarity=-0.017 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 478 LWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 478 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
++..|...|.+.|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677777888888888888887554
No 291
>PRK10941 hypothetical protein; Provisional
Probab=92.40 E-value=1.3 Score=40.52 Aligned_cols=81 Identities=22% Similarity=0.112 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCeeEEEECCeEeE
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKE 558 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 558 (586)
.+.+-.+|.+.++++.|.++.+.+..+.|+++.-+..-+-+|.+.|.+..|..-++...+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~---------------- 247 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE---------------- 247 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC----------------
Confidence 3455667899999999999999999999999999999999999999999999999998876543
Q ss_pred EecCCCCCCChhHHHHHHHHHHHH
Q 007871 559 FVSGEIFDVQSEELELVIQSFVKT 582 (586)
Q Consensus 559 ~~~~~~~~~~~~~~~~~l~~~~~~ 582 (586)
+|.+.-|..-|+.+..+
T Consensus 248 -------dp~a~~ik~ql~~l~~~ 264 (269)
T PRK10941 248 -------DPISEMIRAQIHSIEQK 264 (269)
T ss_pred -------chhHHHHHHHHHHHhhc
Confidence 56666666666666543
No 292
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.38 E-value=4.5 Score=31.90 Aligned_cols=134 Identities=11% Similarity=0.098 Sum_probs=67.5
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhH---HHHHHHHHHhcCCH
Q 007871 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIV---QTALIDMYMKCGSL 358 (586)
Q Consensus 282 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~ 358 (586)
+.-.|..++..+++.+.... .+..-++.++.-....-+-+...+.++.+ |--.|... ...++.+|+..|..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~C~NlKrVi~C~~~~n~~ 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDISKCGNLKRVIECYAKRNKL 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-S-THHHHHHHHHTT--
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCchhhcchHHHHHHHHHhcch
Confidence 34456777777777776653 23444555554443333333333333333 22222221 22344444444432
Q ss_pred HHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 359 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
. ......+..+...|+-|.-.+++..+.+. -.+++....-+..+|.+.|+..++.+++.++-+
T Consensus 86 s--------------e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 86 S--------------EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 2 22333456667777777777777777653 466777777777788888888887777777766
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.23 E-value=1.1 Score=36.83 Aligned_cols=83 Identities=14% Similarity=0.072 Sum_probs=60.6
Q ss_pred HHHHHHHHH---HhhcCCHHHHHHHHHhCC-CCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 007871 445 EHYSCLVDL---LSRAGELEQALNIVESMP-MKPNLALWGTLL-LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519 (586)
Q Consensus 445 ~~~~~l~~~---~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 519 (586)
.+.+.|+.. -...++.+++..+++.+. .+|.......+- ..+...|+|.+|+.+++.+.+..|..+..--.++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 344455443 357789999999998883 456544443332 337889999999999999988888888888888888
Q ss_pred HHhcCCch
Q 007871 520 YADAGMWE 527 (586)
Q Consensus 520 ~~~~g~~~ 527 (586)
+...|+.+
T Consensus 88 L~~~~D~~ 95 (160)
T PF09613_consen 88 LYALGDPS 95 (160)
T ss_pred HHHcCChH
Confidence 88887754
No 294
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.12 E-value=2.3 Score=36.25 Aligned_cols=96 Identities=11% Similarity=0.004 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHH--H
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD--LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC--L 450 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--l 450 (586)
.+..+...|.+.|+.++|.+.|.++.+....|.. ..+..++......|++..+...+.++..-.....|...-+. .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 5666777888888888888888888775444444 35667777778888888888887777662111112222111 1
Q ss_pred --HHHHhhcCCHHHHHHHHHhC
Q 007871 451 --VDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 451 --~~~~~~~g~~~~A~~~~~~~ 470 (586)
+-.+...+++.+|.+.|-+.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 12234567888888777665
No 295
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.10 E-value=0.84 Score=36.79 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=53.3
Q ss_pred hhcCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 007871 455 SRAGELEQALNIVESMP-MKPN---LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWE 527 (586)
Q Consensus 455 ~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 527 (586)
...++++++..+++.+. .+|+ ..++... .+...|+|++|.++++.+.+..+..+..--.++.++...|+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 45788999999988882 3444 3444333 3778899999999999998888887877777888888888754
No 296
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.05 E-value=0.27 Score=28.18 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=25.2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 511 GLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 511 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.++..++.++...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999998764
No 297
>PRK09687 putative lyase; Provisional
Probab=91.98 E-value=10 Score=35.18 Aligned_cols=60 Identities=13% Similarity=0.088 Sum_probs=24.6
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCc----hHHHHHHHHH
Q 007871 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNP----KEALYLFREM 298 (586)
Q Consensus 239 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~m 298 (586)
+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. .++...+..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 34444444444444444332222222222334444444444444444442 2344444444
No 298
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.89 E-value=19 Score=38.01 Aligned_cols=179 Identities=13% Similarity=0.108 Sum_probs=93.7
Q ss_pred chHHHHHHHHHHH-cCCCCChhh--HhHHHHHhccCCCCChHHHHHHHhcc----CCCCcc-----hHHHHHHHHhcCCC
Q 007871 25 TTHILQILAQLTT-NDLITEPFT--LSQLLMSLTSPNTLNMDQAERLFNQI----YQPNTY-----MHNTMIRGYTQSSN 92 (586)
Q Consensus 25 ~~~a~~~~~~~~~-~~~~~~~~~--~~~ll~~~~~~~~~~~~~A~~~~~~~----~~~~~~-----~~~~ll~~~~~~~~ 92 (586)
+..+.+.++.+.+ ..++|.... .-.+.. ++...+.+++.|+..+++. .+++.. +...+++.+.+.+.
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~-iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~ 115 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLAS-ILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP 115 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH
Confidence 3445677777774 333333322 233344 5553337899999988876 233322 23345566655554
Q ss_pred chhHHHHHHHhHhCCCC----CCcccHHHH-HHHHhccCCchHHHHHHHHHHHhC---CCCchhHHHHHHHHHH--hcCC
Q 007871 93 PQKALSFYVNMKRKGLL----VDNYTYPFV-LKACGVLMGLVEGTEIHGEVVKMG---FLCDVFVVNGLIGMYS--KCGH 162 (586)
Q Consensus 93 ~~~A~~~~~~m~~~~~~----~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~--~~g~ 162 (586)
.. |...+++..+.--. +-...|..+ +..+...++...|.+.++.+...- ..|-..++-.++.+.. +.+.
T Consensus 116 ~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 116 KA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred HH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 44 88888876653211 112223333 222223378888888888776543 2334444444444433 4454
Q ss_pred hhHHHHHhccCC-------------CCChhhHHHHHHH--HHhCCChhHHHHHHhhCC
Q 007871 163 MGCARSVFEGSE-------------IKDLVSWNLVLRG--FVECGEMGKAREVFDEMP 205 (586)
Q Consensus 163 ~~~a~~~~~~~~-------------~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~ 205 (586)
.+.+.+.++++. .+...+|..++.. +...|+++.+...++.+.
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555554331 1123455555544 356677667666666554
No 299
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.87 E-value=8.4 Score=33.87 Aligned_cols=49 Identities=10% Similarity=0.103 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHhHHhh-CCCCCh---HHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 422 GLATEGYRIFQSMKRHC-GIEPKL---EHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 422 g~~~~A~~~~~~~~~~~-~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
.+++.|+..|+..-.=+ |-..+. ..+......-...+++.+|+.+|++.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQV 180 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666654411 111122 22333334445678889999998887
No 300
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.42 E-value=2.3 Score=34.40 Aligned_cols=108 Identities=14% Similarity=0.157 Sum_probs=65.3
Q ss_pred HHHHHHHHHHh---hccCCHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHH
Q 007871 408 DLIFLGVLIAC---SHSGLATEGYRIFQSMKRHCGIEPKL-EHYSCLVDLLSRAGELEQALNIVESMPMKP-NLALWGTL 482 (586)
Q Consensus 408 ~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l 482 (586)
....+.|+... ...++.+++..+++.+.- +.|+. ..-..-+..+...|++++|..+|++....+ ....-..|
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL 83 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKAL 83 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHH
Confidence 34555555543 458899999999999866 34432 232334556789999999999999996544 33333334
Q ss_pred HHHHHh-cCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 483 LLACRN-HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 483 ~~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
+..|.. .||. .|...+......|.-.+++.+.+.+.
T Consensus 84 ~A~CL~al~Dp-------------------~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 84 LALCLNAKGDA-------------------EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHhcCCh-------------------HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 433433 2321 24444444445555566666666665
No 301
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.39 E-value=1.4 Score=37.57 Aligned_cols=92 Identities=14% Similarity=0.045 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCcchHHH--
Q 007871 445 EHYSCLVDLLSRAGELEQALNIVESMPMK---P--NLALWGTLLLACRNHQNVTLAEVVVEGLVELK--ADDCGLYVL-- 515 (586)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~-- 515 (586)
..+..++.-|.+.|+.++|.+.+.++... + -...+..++......+++..+...+.++...- +.+....+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45556667777777777777777666321 1 23444556666666777777777777666542 222222211
Q ss_pred --HHHHHHhcCCchHHHHHHHHH
Q 007871 516 --LSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 516 --l~~~~~~~g~~~~A~~~~~~m 536 (586)
-+-.+...|+|.+|.+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 122355667787777766443
No 302
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.36 E-value=0.36 Score=27.73 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=25.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 511 GLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 511 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.+|..++.+|...|++++|+..+++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 47889999999999999999999998764
No 303
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.36 E-value=22 Score=37.62 Aligned_cols=462 Identities=9% Similarity=-0.100 Sum_probs=225.7
Q ss_pred hhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhc--CCCchhHHHHHHHhHhCCCCCCc-ccHHHHHH
Q 007871 44 PFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ--SSNPQKALSFYVNMKRKGLLVDN-YTYPFVLK 120 (586)
Q Consensus 44 ~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~ 120 (586)
-..|..... ..+. |++..+.++...+..+....|-.-...... ...+++...++++-. --|-. ..-...+.
T Consensus 34 r~~f~~A~~--a~~~-g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~---~~P~~~~Lr~~~l~ 107 (644)
T PRK11619 34 RQRYQQIKQ--AWDN-RQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQVTNFIRANP---TLPPARSLQSRFVN 107 (644)
T ss_pred HHHHHHHHH--HHHC-CCHHHHHHHHHhccCCCcHhHHHHHHHHhccccCCHHHHHHHHHHCC---CCchHHHHHHHHHH
Confidence 445555555 3344 678888777777743333333222222112 223343333333221 11222 22223344
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC---CCChhhHHHHHHHHHhCCChhHH
Q 007871 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE---IKDLVSWNLVLRGFVECGEMGKA 197 (586)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 197 (586)
.+.+.+++......+. ..+.+.........+....|+.++|......+- ...+...+.++..+.+.|.....
T Consensus 108 ~La~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~ 182 (644)
T PRK11619 108 ELARREDWRGLLAFSP-----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPL 182 (644)
T ss_pred HHHHccCHHHHHHhcC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHH
Confidence 4555555554444211 123344444556666677777665544444331 11345566666666666554433
Q ss_pred HHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHH-
Q 007871 198 REVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS- 276 (586)
Q Consensus 198 ~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 276 (586)
.. +.- +... ...|+...|..+...+.+........++..+.. ...+...+.... ++...-.
T Consensus 183 d~------------w~R-~~~a-l~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~ 244 (644)
T PRK11619 183 AY------------LER-IRLA-MKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQM 244 (644)
T ss_pred HH------------HHH-HHHH-HHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHH
Confidence 21 111 1222 456777777777776633223333344444333 333333333321 2211111
Q ss_pred -HHHHHHHhCCCchHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007871 277 -IMIDGYAQHGNPKEALYLFREMLCQG-VRPDVI--SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352 (586)
Q Consensus 277 -~l~~~~~~~~~~~~A~~~~~~m~~~g-~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 352 (586)
.+.-.-....+.+.|...+....... ..+... ....+.......+..+.+...+....... .+......-+...
T Consensus 245 ~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~A 322 (644)
T PRK11619 245 AAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMA 322 (644)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHH
Confidence 11111223456688888888775443 222222 22233322333322455555555433222 2444445555566
Q ss_pred HhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHH-H
Q 007871 353 MKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG-Y 428 (586)
Q Consensus 353 ~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A-~ 428 (586)
.+.++++.+...+..|.. ....-..=+..++...|+.++|...|+++.. .. +|..++.+ .+.|..-.- .
T Consensus 323 l~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~Lg~~~~~~~ 395 (644)
T PRK11619 323 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QRLGEEYPLKI 395 (644)
T ss_pred HHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HHcCCCCCCCC
Confidence 688888888888888763 1222223355666668899999888888743 12 23333322 111211000 0
Q ss_pred HHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--
Q 007871 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK-- 506 (586)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 506 (586)
.....-.. .+..+ . -..-+..+...|+...|...+..+....+......+.....+.|.++.++.........+
T Consensus 396 ~~~~~~~~--~~~~~-~-~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~ 471 (644)
T PRK11619 396 DKAPKPDS--ALTQG-P-EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHL 471 (644)
T ss_pred CCCCchhh--hhccC-h-HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHH
Confidence 00000000 00000 1 112345566789999998888776434555666666666778888888887776544321
Q ss_pred -CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCe
Q 007871 507 -ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547 (586)
Q Consensus 507 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 547 (586)
-.-|..|...+..+.+.-..+.+.-+--.-.+.+..|...+
T Consensus 472 ~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~S 513 (644)
T PRK11619 472 EERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKARS 513 (644)
T ss_pred HHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcc
Confidence 12233466666666666667776654444457777776544
No 304
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.85 E-value=13 Score=34.74 Aligned_cols=137 Identities=18% Similarity=0.270 Sum_probs=70.9
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----ChhHHHHHHHHHHHcCCC---CchhHHHHHHHHHHhcCCH
Q 007871 288 PKEALYLFREMLCQGVRPDVISVMGAISACAQ--VG----ALDLGKWIHVFMKRSRIT---MDMIVQTALIDMYMKCGSL 358 (586)
Q Consensus 288 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 358 (586)
+++.+.+++.|.+.|+.-+..+|.+....... .. ...++..+|+.|++...- ++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34666788888888888887776654443333 11 234566677777665321 112222222211 11111
Q ss_pred HHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhccCC--HHHHHHHHHHh
Q 007871 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL--IFLGVLIACSHSGL--ATEGYRIFQSM 434 (586)
Q Consensus 359 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~--~~~A~~~~~~~ 434 (586)
+. -.+.+..+|+.+...|+..+.. ....++..+..... ..++.++++.+
T Consensus 156 e~---------------------------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 156 EE---------------------------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HH---------------------------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 11 1245566777777766665442 23333332222222 34667777777
Q ss_pred HHhhCCCCChHHHHHHHHHH
Q 007871 435 KRHCGIEPKLEHYSCLVDLL 454 (586)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~~~ 454 (586)
.+. ++++....|..++-..
T Consensus 209 ~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 209 KKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHc-CCccccccccHHHHHH
Confidence 774 7777766666555433
No 305
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.76 E-value=6 Score=36.98 Aligned_cols=142 Identities=15% Similarity=0.182 Sum_probs=87.0
Q ss_pred hhHHHHHHHccC-c----hHHHHHHHHHHHcCCCCChhhHhHHHHHhccC--CC---CChHHHHHHHhccC-------CC
Q 007871 13 NPLVSLLQISKT-T----THILQILAQLTTNDLITEPFTLSQLLMSLTSP--NT---LNMDQAERLFNQIY-------QP 75 (586)
Q Consensus 13 ~~l~~~l~~~~~-~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~---~~~~~A~~~~~~~~-------~~ 75 (586)
..++.++...+. + ++...+++.|.+.|...+.+++-+... +... .. ....+|..+|+.|. .+
T Consensus 61 ~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~-i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~ 139 (297)
T PF13170_consen 61 FILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALI-ILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP 139 (297)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHH-HHHhcccccHHHHHHHHHHHHHHHHHhCccccCc
Confidence 345556666655 4 445888999999998888777765333 2322 10 13567888888882 24
Q ss_pred CcchHHHHHHHHhcCCCc----hhHHHHHHHhHhCCCCCCccc--HHHHHHHHhccCC--chHHHHHHHHHHHhCCCCch
Q 007871 76 NTYMHNTMIRGYTQSSNP----QKALSFYVNMKRKGLLVDNYT--YPFVLKACGVLMG--LVEGTEIHGEVVKMGFLCDV 147 (586)
Q Consensus 76 ~~~~~~~ll~~~~~~~~~----~~A~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~ 147 (586)
+-.++.+|+.. ..+++ +.+..+|+.+.+.|....... ...++..+..... ...+..+++.+.+.|+++..
T Consensus 140 ~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~ 217 (297)
T PF13170_consen 140 EDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKY 217 (297)
T ss_pred cchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccc
Confidence 44566666554 33333 456778888888787655542 2333333222222 34677888899999988877
Q ss_pred hHHHHHHHHH
Q 007871 148 FVVNGLIGMY 157 (586)
Q Consensus 148 ~~~~~li~~~ 157 (586)
..|..+.-..
T Consensus 218 ~~yp~lGlLa 227 (297)
T PF13170_consen 218 MHYPTLGLLA 227 (297)
T ss_pred ccccHHHHHH
Confidence 7776554433
No 306
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.63 E-value=0.89 Score=41.86 Aligned_cols=92 Identities=13% Similarity=0.095 Sum_probs=61.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC
Q 007871 380 IAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458 (586)
Q Consensus 380 ~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (586)
..-|.++|.+++|+.+|.+-.. +.| |+.++..-..+|.+...+..|..=...... -...-...|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia--Ld~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA--LDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH--hhHHHHHHHHHHHHHHHHHh
Confidence 5679999999999999998877 567 889999999999999988887766665554 11112233333333444445
Q ss_pred CHHHHHHHHHhC-CCCCC
Q 007871 459 ELEQALNIVESM-PMKPN 475 (586)
Q Consensus 459 ~~~~A~~~~~~~-~~~p~ 475 (586)
+..+|.+-++.. ...|+
T Consensus 180 ~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK 197 (536)
T ss_pred hHHHHHHhHHHHHhhCcc
Confidence 555555555443 34555
No 307
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.51 E-value=0.38 Score=25.73 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=18.7
Q ss_pred chHHHHHHHHHhcCCchHHHHHHH
Q 007871 511 GLYVLLSNIYADAGMWEHALRIRK 534 (586)
Q Consensus 511 ~~~~~l~~~~~~~g~~~~A~~~~~ 534 (586)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678888888888888888775
No 308
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.33 E-value=48 Score=39.82 Aligned_cols=63 Identities=13% Similarity=-0.025 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007871 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506 (586)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 506 (586)
..+|...++....+|+++.|...+-......-+..+...+......|+...|+.++++.++.+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 467778888888889999888876655433344555556666788899999999998888754
No 309
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.23 E-value=3.6 Score=37.67 Aligned_cols=78 Identities=17% Similarity=0.298 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH----hhCCCCChHHHHHH
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR----HCGIEPKLEHYSCL 450 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~l 450 (586)
++..++..+...|+++.+...++++... -+-+...|..++.+|...|+...|+..|+.+.+ ..|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4445555555666666666666666553 122445566666666666666666666655544 24556665555444
Q ss_pred HHH
Q 007871 451 VDL 453 (586)
Q Consensus 451 ~~~ 453 (586)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
No 310
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.98 E-value=0.64 Score=26.28 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=11.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHH
Q 007871 514 VLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 514 ~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
..++.++.+.|++++|.+.++++.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Confidence 334444444444444444444443
No 311
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.93 E-value=2.4 Score=31.56 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 007871 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452 (586)
Q Consensus 391 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 452 (586)
+..+-++.+....+.|++......+.+|.+.+++..|.++++.++.+++... ..|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~--~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKK--EIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-T--THHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChH--HHHHHHHH
Confidence 4556666677777899999999999999999999999999999988655443 36766654
No 312
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.81 E-value=22 Score=35.24 Aligned_cols=170 Identities=10% Similarity=0.078 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 007871 344 VQTALIDMYMKCGSLDEARRIFYSMTK--KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421 (586)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 421 (586)
..-+++..+...-++.-+..+..+|.. .+-..|..+++.|... ..+.-..+|+++.+ ..-+......-+..+...
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa~~yEk 144 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHHHHHHH
Confidence 334444444444444444444444432 2333444455555544 33444455555544 222333333333333333
Q ss_pred CCHHHHHHHHHHhHHhhCCCCC------hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC
Q 007871 422 GLATEGYRIFQSMKRHCGIEPK------LEHYSCLVDLLSRAGELEQALNIVESM----PMKPNLALWGTLLLACRNHQN 491 (586)
Q Consensus 422 g~~~~A~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~~~ 491 (586)
++-..+..+|.++..+ +-|. ...|..+.... ..+.+....+..++ +...-...+..+-.-|....+
T Consensus 145 ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 145 IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 4555555555554442 1111 11222222211 12333333333332 112223334444444555666
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 492 VTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 492 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+++|++++..+++.+..|..+...++.-+
T Consensus 221 ~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 221 WTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 66666666666665555555554444443
No 313
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.76 E-value=17 Score=33.82 Aligned_cols=61 Identities=21% Similarity=0.074 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 375 SYNVMIAGLGMNGFGE---EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~---~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
+...++.+|...+..+ +|..+++.+... ..-.+..+..-+..+.+.++.+.+.+.+.+|..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 3444555555555443 344444444332 111233444555555556667777777777766
No 314
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.76 E-value=12 Score=32.00 Aligned_cols=89 Identities=8% Similarity=-0.069 Sum_probs=57.9
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 007871 415 LIACSHSGLATEGYRIFQSMKRHCGIEPK----LEHYSCLVDLLSRAGELEQALNIVESMPMKP-NLALWGTLLLACRNH 489 (586)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~ 489 (586)
...+...|++++|..-++..... +.| ..+-..|.+.....|.+|+|+..++....+. .......-...+...
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~k 172 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHc
Confidence 34567778888888877776542 112 1222345667778888888888888764221 233334445557888
Q ss_pred CChHHHHHHHHHHHhcC
Q 007871 490 QNVTLAEVVVEGLVELK 506 (586)
Q Consensus 490 ~~~~~a~~~~~~~~~~~ 506 (586)
|+-++|...|+++.+.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 88888888888888876
No 315
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.69 E-value=15 Score=33.03 Aligned_cols=252 Identities=17% Similarity=0.180 Sum_probs=137.0
Q ss_pred CCHHHHHHHHhhCCC--C-----ChhHHHHHHHHHHhCCCchHHHHHHHHHHH---CCC--CCCHHHHHHHHHHHhccCC
Q 007871 255 GDLVAAQQLFNEMPE--R-----NVFSWSIMIDGYAQHGNPKEALYLFREMLC---QGV--RPDVISVMGAISACAQVGA 322 (586)
Q Consensus 255 g~~~~A~~~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~---~g~--~~~~~~~~~l~~~~~~~~~ 322 (586)
...++|+.-|.++.+ + .-.+.-.++....+.|++++....+.+|.. ..+ .-+....+.++.-.+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456666666666543 1 223445567777777888777777777652 111 1234456677776666666
Q ss_pred hhHHHHHHHHHHHc-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--------C-------CHhHHHHHHHH
Q 007871 323 LDLGKWIHVFMKRS-----RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--------K-------NVISYNVMIAG 382 (586)
Q Consensus 323 ~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~-------~~~~~~~l~~~ 382 (586)
.+....+|+.-.+. +-+.--.+-..|...|...|.+.+..++++++.. . -...|..-|+.
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 66666555443221 1111122334567777777788777777776641 1 12456667788
Q ss_pred HHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHh-----hccCCHHHHHHHHHHhHHhh---CCCCChH--HHHHHH
Q 007871 383 LGMNGFGEEALKCFAQMETE-GIPKDDLIFLGVLIAC-----SHSGLATEGYRIFQSMKRHC---GIEPKLE--HYSCLV 451 (586)
Q Consensus 383 ~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~---~~~~~~~--~~~~l~ 451 (586)
|..+.+-.+-..+|++.... ..-|.+... .+++-| .+.|.+++|..-|=++-+.+ |.+.... -|..|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 88888888888888876652 234554443 344444 45678887765444443312 2222222 244455
Q ss_pred HHHhhcCCHHHHHHHHHh--C-C--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchH
Q 007871 452 DLLSRAGELEQALNIVES--M-P--MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLY 513 (586)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~--~-~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 513 (586)
..+.+.|- .-|+. + + ..|.......++.+|. .++..+-++++..-...--.+|.+.
T Consensus 280 NMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~~~~IM~DpFIR 340 (440)
T KOG1464|consen 280 NMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQ-NNDIIEFERILKSNRSNIMDDPFIR 340 (440)
T ss_pred HHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHhhhccccccHHHH
Confidence 55555541 11111 1 2 2344555667777774 4566665555554433333444443
No 316
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.64 E-value=0.41 Score=27.63 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=15.8
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHH
Q 007871 441 EPKLEHYSCLVDLLSRAGELEQAL 464 (586)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~~~~A~ 464 (586)
|.+...|..++..|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445666667777777777766664
No 317
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.48 E-value=1.2 Score=36.48 Aligned_cols=129 Identities=16% Similarity=0.068 Sum_probs=73.8
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhH
Q 007871 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGK 196 (586)
Q Consensus 117 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 196 (586)
.++..+...+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 34566666677777777777777666556677778888888888777777777774332 223445566666666666
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007871 197 AREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGD 256 (586)
Q Consensus 197 A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 256 (586)
|..++.++...+.. +..+ ...++++.|.+..... +++..|..++..+...+.
T Consensus 89 a~~Ly~~~~~~~~a-----l~i~-~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHDEA-----LEIL-HKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHTTC-----SSTS-SSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHHHH-----HHHH-HHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 66666555411110 0001 2334444444333333 356677777776665543
No 318
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.39 E-value=0.9 Score=27.43 Aligned_cols=26 Identities=23% Similarity=0.144 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
++.+...|...|++++|+.+++++.+
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 34444444444444444444444443
No 319
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.33 E-value=34 Score=36.62 Aligned_cols=157 Identities=16% Similarity=0.115 Sum_probs=71.4
Q ss_pred HhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHH---HH--HHHH
Q 007871 384 GMNGFGEEALKCFAQMETE----GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS---CL--VDLL 454 (586)
Q Consensus 384 ~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~l--~~~~ 454 (586)
...|++++|+++.+..... -..+....+..+..+..-.|++++|..+.+...+. .-..+...+. .+ ...+
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il 547 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEIL 547 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHH
Confidence 3456677777766665542 11122233444455555567777777666655541 1122222222 11 2334
Q ss_pred hhcCCHH--HHHHHHHhC-----CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCc---chHHHH
Q 007871 455 SRAGELE--QALNIVESM-----PMKP----NLALWGTLLLACRNHQNVTLAEVVVEGLVEL----KADDC---GLYVLL 516 (586)
Q Consensus 455 ~~~g~~~--~A~~~~~~~-----~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~~---~~~~~l 516 (586)
..+|... +....+... +.+| -......++.++.+ ++.+..-.....+. .|... ..+..|
T Consensus 548 ~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~L 624 (894)
T COG2909 548 EAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSML 624 (894)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHH
Confidence 4555222 222222222 1112 12223333333322 33333333333332 12211 112356
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCCccC
Q 007871 517 SNIYADAGMWEHALRIRKMMRKRKIKKE 544 (586)
Q Consensus 517 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 544 (586)
+.++...|+.++|...++++......+.
T Consensus 625 A~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 625 AELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 7777777777777777777766555443
No 320
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.06 E-value=2.7 Score=30.94 Aligned_cols=62 Identities=19% Similarity=0.319 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 007871 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452 (586)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 452 (586)
.=++.+-++.+....+.|++......+.+|.+.+++..|.++++.++.+++. +...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 3355666667777778999999999999999999999999999988864443 4446665554
No 321
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.96 E-value=1.7 Score=28.15 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHH
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 515 (586)
...+..++.+.|++++|.+..+.+++.+|+|..+...
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3456667889999999999999999999999866544
No 322
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.96 E-value=27 Score=36.32 Aligned_cols=153 Identities=13% Similarity=0.104 Sum_probs=72.9
Q ss_pred cCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHhhccC-----CHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 007871 386 NGFGEEALKCFAQMET-------EGIPKDDLIFLGVLIACSHSG-----LATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453 (586)
Q Consensus 386 ~~~~~~A~~~~~~m~~-------~g~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (586)
..+.+.|+.+|+.+.. .|.+ .....+..+|.+.. +.+.|..++..... .| .|+.... ++.+
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~---~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g-~~~a~~~--lg~~ 334 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLP---PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LG-NPDAQYL--LGVL 334 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCC---ccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cC-CchHHHH--HHHH
Confidence 3455555555555444 3322 23344444444422 45566666666655 22 2333222 2222
Q ss_pred Hhhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 007871 454 LSRA---GELEQALNIVESMPMKPNLALWGTLLLACR----NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMW 526 (586)
Q Consensus 454 ~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 526 (586)
|... .+...|.++|......-....+..+...|. -..+...|..++.++.+.++............+.. +++
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~ 413 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRY 413 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccc
Confidence 2221 345667777766633333333333332221 23366777777777777663322222222222333 666
Q ss_pred hHHHHHHHHHHhCCCccCCC
Q 007871 527 EHALRIRKMMRKRKIKKETG 546 (586)
Q Consensus 527 ~~A~~~~~~m~~~~~~~~~~ 546 (586)
+.+.-.+..+...|......
T Consensus 414 ~~~~~~~~~~a~~g~~~~q~ 433 (552)
T KOG1550|consen 414 DTALALYLYLAELGYEVAQS 433 (552)
T ss_pred cHHHHHHHHHHHhhhhHHhh
Confidence 66666666666665544333
No 323
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.88 E-value=10 Score=38.30 Aligned_cols=149 Identities=18% Similarity=0.106 Sum_probs=89.0
Q ss_pred hcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 007871 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433 (586)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (586)
-.|+++.|..++..+.+ ...+.++..+.++|-.++|+++ .+|+.-- .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 45667777766655553 2334445555666666666543 3333211 1123456778877776554
Q ss_pred hHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchH
Q 007871 434 MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLY 513 (586)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 513 (586)
. .+..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+-+....+-....+.+..|...
T Consensus 663 ~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF- 728 (794)
T KOG0276|consen 663 A-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAF- 728 (794)
T ss_pred h-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchHH-
Confidence 4 234567788888888888888888887764 24555666666677665555555555555444322
Q ss_pred HHHHHHHHhcCCchHHHHHHHH
Q 007871 514 VLLSNIYADAGMWEHALRIRKM 535 (586)
Q Consensus 514 ~~l~~~~~~~g~~~~A~~~~~~ 535 (586)
.+|...|+++++.+++..
T Consensus 729 ----~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 729 ----LAYFLSGDYEECLELLIS 746 (794)
T ss_pred ----HHHHHcCCHHHHHHHHHh
Confidence 346667777777776643
No 324
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.80 E-value=0.59 Score=26.44 Aligned_cols=26 Identities=12% Similarity=-0.050 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
+..+..++.+.|++++|...|+++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44566778889999999999998763
No 325
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.33 E-value=14 Score=30.97 Aligned_cols=136 Identities=10% Similarity=0.088 Sum_probs=74.8
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhH
Q 007871 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAIS 211 (586)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 211 (586)
.+..+.+.+.+++|+...+..++..+.+.|++.....+++--.-+|.......+-.+. +....+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~------------- 78 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLG--NQYPPAY------------- 78 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhH--ccChHHH-------------
Confidence 3455666677889999999999999999999888888776544443332222221111 1111111
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHH
Q 007871 212 WSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291 (586)
Q Consensus 212 ~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 291 (586)
+-|..++.++. ..+..++..+...|++-+|.+.......-+......++.+-.+.+|...-
T Consensus 79 ---------------Ql~lDMLkRL~----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf 139 (167)
T PF07035_consen 79 ---------------QLGLDMLKRLG----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLF 139 (167)
T ss_pred ---------------HHHHHHHHHhh----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHH
Confidence 11112222211 12334455566667777777777665443333344556666666666655
Q ss_pred HHHHHHHHHC
Q 007871 292 LYLFREMLCQ 301 (586)
Q Consensus 292 ~~~~~~m~~~ 301 (586)
..+++-....
T Consensus 140 ~~V~~ff~~~ 149 (167)
T PF07035_consen 140 YAVFRFFEER 149 (167)
T ss_pred HHHHHHHHHh
Confidence 5555555443
No 326
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.23 E-value=0.96 Score=27.29 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=24.7
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 511 GLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 511 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.+++.++.+|...|++++|..++++....
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46889999999999999999999998653
No 327
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.08 E-value=38 Score=35.63 Aligned_cols=122 Identities=13% Similarity=0.174 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC-CCChhHHHHHHHHHhhccCCHH
Q 007871 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP-QKDAISWSIMIDGYRKKKGDIS 227 (586)
Q Consensus 149 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~ll~~~~~~~g~~~ 227 (586)
+....|..+...|++++|-...-.|...+..-|...+..+...++......++=.-. .-+...|..++..+ .. .+..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~-L~-~~~~ 471 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEF-LA-SDVK 471 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHH-HH-HHHH
Confidence 555666666777777777766666666666666666666666665554433322211 12334455554444 22 2222
Q ss_pred HHHHHHHhCC--------------C------CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh
Q 007871 228 SARILFEHMP--------------I------KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272 (586)
Q Consensus 228 ~a~~~~~~~~--------------~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 272 (586)
.-.++..... + .+......|+..|...++++.|..++-...++++
T Consensus 472 ~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 472 GFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 2222211111 0 1223344588888999999999998888877554
No 328
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.74 E-value=1.2 Score=25.41 Aligned_cols=29 Identities=28% Similarity=0.333 Sum_probs=25.8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 511 GLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 511 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.+|..++.+|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46888999999999999999999998763
No 329
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=87.66 E-value=52 Score=36.74 Aligned_cols=94 Identities=11% Similarity=-0.056 Sum_probs=46.2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHH-HHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007871 238 IKDLISWNSMIDGYAKIGDLVAAQ-QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISA 316 (586)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 316 (586)
.+|..+..+.+.++...|..+.+. .+...+.+++...-...+.++...+. +++...+..+.+ .|+...-...+.+
T Consensus 786 D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~a 861 (897)
T PRK13800 786 DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLA 861 (897)
T ss_pred CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHH
Confidence 455666666666666666544332 23333334554444445555555544 334444444443 3455555555555
Q ss_pred HhccCChhHHHHHHHHHHH
Q 007871 317 CAQVGALDLGKWIHVFMKR 335 (586)
Q Consensus 317 ~~~~~~~~~a~~~~~~~~~ 335 (586)
+.+......+...+..+.+
T Consensus 862 L~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 862 LTRWPGDPAARDALTTALT 880 (897)
T ss_pred HhccCCCHHHHHHHHHHHh
Confidence 5554323344444444443
No 330
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.48 E-value=12 Score=32.09 Aligned_cols=99 Identities=12% Similarity=0.033 Sum_probs=52.6
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 007871 419 SHSGLATEGYRIFQSMKRHCGIEPK-----LEHYSCLVDLLSRAGELEQALNIVESM-PMKPN-LALWGTLLLACRNHQN 491 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~ 491 (586)
...|++++|..-|..... .+++. ...|..-.-++.+.+.++.|++-..+. ...|. ......-..+|.+...
T Consensus 106 F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 445555555555555555 22221 123333444555666666666655443 22231 1222222344666677
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 007871 492 VTLAEVVVEGLVELKADDCGLYVLLSNI 519 (586)
Q Consensus 492 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 519 (586)
++.|+.-|+++.+.+|....+....+++
T Consensus 184 ~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 7777777777777777766555555444
No 331
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=87.06 E-value=6.5 Score=31.18 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=43.9
Q ss_pred CCChHHHHHHHHHHhhcCCHH---HHHHHHHhC-C-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcch
Q 007871 441 EPKLEHYSCLVDLLSRAGELE---QALNIVESM-P-MKP--NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512 (586)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~-~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 512 (586)
.++..+--.+..++.+..+.+ +.+.++++. + ..| .......|.-++.+.++|+++.++.+.+++.+|+|..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 455555556666776665443 445556555 2 223 23444555566777778888888887777777776643
No 332
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.85 E-value=6.9 Score=35.96 Aligned_cols=101 Identities=13% Similarity=0.133 Sum_probs=71.9
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-CCH-----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 007871 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK-KNV-----ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409 (586)
Q Consensus 336 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 409 (586)
.|.+.+..+...++.......+++.+...+-++.. |+. .+-.+.++.+. .-++++++.++..=+.-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 34455555666666666667788888888777663 211 11112223222 346779999998888899999999
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHh
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRH 437 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 437 (586)
+++.+++.+.+.+++.+|.++.-.|..+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999888887763
No 333
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.69 E-value=6 Score=36.33 Aligned_cols=102 Identities=23% Similarity=0.323 Sum_probs=66.2
Q ss_pred cCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc-CCCCcc-----hHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCC
Q 007871 38 NDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI-YQPNTY-----MHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVD 111 (586)
Q Consensus 38 ~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~-~~~~~~-----~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~ 111 (586)
.|.+-+..+...++. ..... .+++++...+=.+ ..|+.. +-...++.+.+ -++++++.++..=+..|+-||
T Consensus 58 ~g~~~s~~~Vd~~V~-v~~~~-~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVD-VISSR-EEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred cCCCcceeehhhhhh-ccccc-cchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccc
Confidence 344555556666665 44444 6788887776665 222211 12233343333 356778888777778888888
Q ss_pred cccHHHHHHHHhccCCchHHHHHHHHHHHhC
Q 007871 112 NYTYPFVLKACGVLMGLVEGTEIHGEVVKMG 142 (586)
Q Consensus 112 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 142 (586)
..+++.+|..+.+.+++.+|.++..+|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888888888888888877776643
No 334
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.63 E-value=29 Score=36.57 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=28.9
Q ss_pred HHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcc
Q 007871 82 TMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVL 125 (586)
Q Consensus 82 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 125 (586)
.+|-.|.|.|++++|.++....... .......+...+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 5666778888888888888655543 445556677777777664
No 335
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.46 E-value=1.1 Score=36.76 Aligned_cols=53 Identities=8% Similarity=0.082 Sum_probs=24.9
Q ss_pred HHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHH
Q 007871 84 IRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHG 136 (586)
Q Consensus 84 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 136 (586)
+..+.+.+.+.....+++.+...+...+....+.++..|++.+..+....+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444445555555555555544433344445555555555544444444433
No 336
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=86.05 E-value=2.7 Score=31.07 Aligned_cols=44 Identities=23% Similarity=0.267 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 497 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
..+++.++.+|+|......++..+...|++++|.+.+-.+.+..
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44555566677777777777777777777777777666665543
No 337
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.01 E-value=1.6 Score=26.95 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 514 VLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 514 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
..|+.+|...|+.+.|++++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468889999999999999999988644
No 338
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.94 E-value=16 Score=31.48 Aligned_cols=74 Identities=19% Similarity=0.189 Sum_probs=53.2
Q ss_pred hcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCcchHHHHHHHHHhcCCchHH
Q 007871 456 RAGELEQALNIVESMPMKP--NLALWGTLLLACRNHQNVTLAEVVVEGLVELK----ADDCGLYVLLSNIYADAGMWEHA 529 (586)
Q Consensus 456 ~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A 529 (586)
+.|+ ++|.+.|-.+...| +.......+..|....|.++++.++-+++++. ..|+.++..|+.+|.+.|+++.|
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3344 56777776664333 33333444445555779999999999999975 33789999999999999999988
Q ss_pred H
Q 007871 530 L 530 (586)
Q Consensus 530 ~ 530 (586)
.
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 5
No 339
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.78 E-value=48 Score=34.50 Aligned_cols=246 Identities=11% Similarity=0.027 Sum_probs=110.5
Q ss_pred hCCCchHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccC-----ChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007871 284 QHGNPKEALYLFREMLC-------QGVRPDVISVMGAISACAQVG-----ALDLGKWIHVFMKRSRITMDMIVQTALIDM 351 (586)
Q Consensus 284 ~~~~~~~A~~~~~~m~~-------~g~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (586)
...|++.|+.+|+.+.+ .|.++ ....+..+|.+.. +...|..++....+.|.+ +....-..+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~~---a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLPP---AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCCc---cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 34455666666665554 33221 2333444444322 344566666666665522 22222111111
Q ss_pred HHh-cCCHHHHHHHHhccCCC-CHhHHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHH
Q 007871 352 YMK-CGSLDEARRIFYSMTKK-NVISYNVMIAGLG----MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425 (586)
Q Consensus 352 ~~~-~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~----~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 425 (586)
... ..+...|.++|....+. .+.++-.+...|. ...+...|..++++..+.| .|...--...+..+.. +.++
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cccc
Confidence 111 13455666666655432 2222222222221 2235666777777776665 3322222222222333 5555
Q ss_pred HHHHHHHHhHHhhCCCCChHHHHHHHHHH---hh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHH
Q 007871 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLL---SR----AGELEQALNIVESMPMKPNLALWGTLLLACRN----HQNVTL 494 (586)
Q Consensus 426 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~ 494 (586)
.+.-.+..+.. .+.......-..+.... .. ..+.+.+...+.+...+-+......+...|.. ..++..
T Consensus 415 ~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~ 493 (552)
T KOG1550|consen 415 TALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEK 493 (552)
T ss_pred HHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHH
Confidence 55555554444 23322111111111111 11 12344555555555433344444444444322 235777
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcC---CchHHHHHHHHHHhC
Q 007871 495 AEVVVEGLVELKADDCGLYVLLSNIYADAG---MWEHALRIRKMMRKR 539 (586)
Q Consensus 495 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~ 539 (586)
|...+..+.... +.....++..+...- ++..|.+++++....
T Consensus 494 a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 494 AAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 777777776665 556666666654331 156677777666543
No 340
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=85.71 E-value=23 Score=30.84 Aligned_cols=63 Identities=8% Similarity=-0.191 Sum_probs=37.5
Q ss_pred cchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHH
Q 007871 77 TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140 (586)
Q Consensus 77 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 140 (586)
+..||-|.--+...|+++.|.+.|+...+.+..-+-...|.-|. +.-.|++..|.+-+...-+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHh
Confidence 44677777777778888888888887777643322222222222 2245677777666555554
No 341
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.41 E-value=6 Score=29.23 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=35.9
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 469 SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 469 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
.+..-|++....+.+.+|.+.+|+..|.++++.+...-.++...|..+.
T Consensus 35 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 35 GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 3356688888888888999999999999998877755444444555544
No 342
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=85.25 E-value=41 Score=33.25 Aligned_cols=163 Identities=8% Similarity=-0.046 Sum_probs=71.1
Q ss_pred HHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 007871 84 IRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHM 163 (586)
Q Consensus 84 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 163 (586)
|+++...| ..+++.+....... ++...+.....++....+......+.+.+. .++..+....++++...++.
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~----d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQ----AGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhc----CCCHHHHHHHHHHHhcCCch
Confidence 55666666 45666555555332 223333333333332222222333333332 24555666667777666666
Q ss_pred hHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhH
Q 007871 164 GCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243 (586)
Q Consensus 164 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~ 243 (586)
.....+..-+...++......+.++...+. +-...+...+..+|...-...+.++ ...+..+..-.+..-....|..+
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raL-G~l~~~~a~~~L~~al~d~~~~V 194 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRAL-GELPRRLSESTLRLYLRDSDPEV 194 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHH-HhhccccchHHHHHHHcCCCHHH
Confidence 655555555555555554444555444331 1111222222244444434444444 33333322222222223344444
Q ss_pred HHHHHHHHHhcCC
Q 007871 244 WNSMIDGYAKIGD 256 (586)
Q Consensus 244 ~~~l~~~~~~~g~ 256 (586)
-..-+.+....|.
T Consensus 195 R~aA~~al~~lG~ 207 (410)
T TIGR02270 195 RFAALEAGLLAGS 207 (410)
T ss_pred HHHHHHHHHHcCC
Confidence 4444444444444
No 343
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=85.10 E-value=39 Score=32.82 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=50.2
Q ss_pred CHHHHHHH---HHHHHhcCChHHHHHHHHHHHhcCCC-CcchHHHHHHHH-HhcCCchHHHHHHHHHHh
Q 007871 475 NLALWGTL---LLACRNHQNVTLAEVVVEGLVELKAD-DCGLYVLLSNIY-ADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 475 ~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~ 538 (586)
|...|.++ +..+.+.|-+..|.++.+-+..++|. ||..-...++.| .++++++--+++++....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44555544 44578899999999999999999998 888777777776 577888888888877655
No 344
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.01 E-value=21 Score=36.12 Aligned_cols=101 Identities=17% Similarity=0.126 Sum_probs=62.6
Q ss_pred HhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHH
Q 007871 252 AKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV 331 (586)
Q Consensus 252 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 331 (586)
.+.|+++.|.++..+. .+..-|..|..+..+.+++..|.+.|..... |..|+-.+...|+-+....+-.
T Consensus 648 l~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 4456666666554433 3455677777777777777777777766543 3455556666666665555555
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 007871 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369 (586)
Q Consensus 332 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (586)
...+.|. . |....+|...|+++++.+++..-.
T Consensus 717 ~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 717 LAKKQGK-N-----NLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHhcC
Confidence 5555552 1 233445666788888888876554
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.89 E-value=4.3 Score=36.83 Aligned_cols=59 Identities=14% Similarity=-0.078 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
+......|...|.+.+|.++.+++...+|-+...+..++..|...|+--.|..-|+++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 44455668899999999999999999999999999999999999999888888888874
No 346
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.35 E-value=7.7 Score=29.01 Aligned_cols=49 Identities=20% Similarity=0.368 Sum_probs=34.9
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 469 SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 469 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
.+..-|++......+.+|.+.+|+..|.++++.+...-.+....|..++
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 3356689999999999999999999999999988876655554666555
No 347
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.64 E-value=2.1 Score=23.35 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHH
Q 007871 513 YVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 513 ~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
+..++.++...|++++|...++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444444444444444
No 348
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.57 E-value=1.1e+02 Score=36.98 Aligned_cols=304 Identities=10% Similarity=0.017 Sum_probs=163.0
Q ss_pred hccCCHHHHHHHHHhCC----CC--ChhHHHHHHHHHHhcCCHHHHHHHHh-hCCCCChhHHHHHHHHHHhCCCchHHHH
Q 007871 221 KKKGDISSARILFEHMP----IK--DLISWNSMIDGYAKIGDLVAAQQLFN-EMPERNVFSWSIMIDGYAQHGNPKEALY 293 (586)
Q Consensus 221 ~~~g~~~~a~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 293 (586)
.+.+.+..|...++.-. +. ....+..+...|...++++...-+.. +..+|+.. .-+......|+++.|..
T Consensus 1394 frc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~---~qil~~e~~g~~~da~~ 1470 (2382)
T KOG0890|consen 1394 FRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSLY---QQILEHEASGNWADAAA 1470 (2382)
T ss_pred HhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccHH---HHHHHHHhhccHHHHHH
Confidence 56777778888777732 11 22345555557888888777776666 33344322 23344567889999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCH
Q 007871 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNV 373 (586)
Q Consensus 294 ~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 373 (586)
.|+.+.+.+ ++...+++.++......+.++...-..+......-+-....++.-+.+--+.++++...+.+. ..+.
T Consensus 1471 Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~ 1546 (2382)
T KOG0890|consen 1471 CYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNI 1546 (2382)
T ss_pred HHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccc
Confidence 999998764 444667777777777777777666554444333211111222223334456677777666655 3344
Q ss_pred hHHHHH--HHHHHhcCChH--HHHHHHHHHHHCCCCC--------C-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCC
Q 007871 374 ISYNVM--IAGLGMNGFGE--EALKCFAQMETEGIPK--------D-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGI 440 (586)
Q Consensus 374 ~~~~~l--~~~~~~~~~~~--~A~~~~~~m~~~g~~p--------~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 440 (586)
..|... +....+..+-| .-...++.+.+.-+.| + ...|..++....-. ++-.......+.
T Consensus 1547 e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-------el~~~~~~l~~~ 1619 (2382)
T KOG0890|consen 1547 EYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-------ELENSIEELKKV 1619 (2382)
T ss_pred cchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-------HHHHHHHHhhcc
Confidence 444443 22222222111 1112233222211111 0 01222222221110 000000000122
Q ss_pred CCChH------HHHHHHHHHhhcCCHHHHHHHH---Hh----CCCC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007871 441 EPKLE------HYSCLVDLLSRAGELEQALNIV---ES----MPMK-----PNLALWGTLLLACRNHQNVTLAEVVVEGL 502 (586)
Q Consensus 441 ~~~~~------~~~~l~~~~~~~g~~~~A~~~~---~~----~~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 502 (586)
.++.. -|..-+. +.+....+.+-. .+ ...+ --..+|..........|.++.|...+-.+
T Consensus 1620 s~~~~s~~~sd~W~~Rl~---~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A 1696 (2382)
T KOG0890|consen 1620 SYDEDSANNSDNWKNRLE---RTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNA 1696 (2382)
T ss_pred CccccccccchhHHHHHH---HhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence 22221 1211111 222222222211 11 1122 23578888888899999999999998888
Q ss_pred HhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 007871 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543 (586)
Q Consensus 503 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 543 (586)
.+.. -+.++...+..+...|+...|..+++.........
T Consensus 1697 ~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1697 KESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred hhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 8776 45678889999999999999999999988765543
No 349
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.55 E-value=11 Score=33.29 Aligned_cols=58 Identities=5% Similarity=-0.138 Sum_probs=48.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.-.++...|++-++++....++...|.|..+|+.-+.+....=+.++|.+-+....+.
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3344567889999999999999999999999999998888888888888888877663
No 350
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.42 E-value=6.1 Score=33.25 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccC
Q 007871 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544 (586)
Q Consensus 492 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 544 (586)
+++|...|+++.+.+|.|......|-.+ ++|-++..++.+.+....
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSSS---
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHHhhhh
Confidence 6778888888888999988666655422 357788888877765433
No 351
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.21 E-value=9.8 Score=37.16 Aligned_cols=88 Identities=15% Similarity=0.114 Sum_probs=43.2
Q ss_pred hhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCChHHH
Q 007871 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP-MK-PNLALWGTLLLACRNHQNVTLA 495 (586)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~~~~~a 495 (586)
....|+++.+.+.+....+ -+.....+...+++...+.|++++|...-..|- .. .++........+....|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence 3455666666555555544 233344455555555556666666665555441 11 1222222222223344555566
Q ss_pred HHHHHHHHhcCC
Q 007871 496 EVVVEGLVELKA 507 (586)
Q Consensus 496 ~~~~~~~~~~~p 507 (586)
...++++..++|
T Consensus 411 ~~~wk~~~~~~~ 422 (831)
T PRK15180 411 YHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHhccCC
Confidence 666666655553
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.19 E-value=6.4 Score=34.15 Aligned_cols=63 Identities=14% Similarity=0.080 Sum_probs=41.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 448 SCLVDLLSRAGELEQALNIVES-MPMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 448 ~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
+..+..+.+.+.+++|+..... .+.+| +..+-..++..++-.|+|++|..-++-+-++.|++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3445566677777777776643 35555 445555666667777888888777777777776643
No 353
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=81.88 E-value=9.8 Score=33.61 Aligned_cols=64 Identities=19% Similarity=0.090 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCChHH-------HHHHHHHHHhcC--CC----CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007871 478 LWGTLLLACRNHQNVTL-------AEVVVEGLVELK--AD----DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 478 ~~~~l~~~~~~~~~~~~-------a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 541 (586)
.+..+.+.|...|+.+. |...|+++.+.. |. ...+...++.+..+.|++++|.+.+.++...+-
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 34445555666666443 444444444432 22 245677788888888999999988888876543
No 354
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.80 E-value=9.8 Score=24.68 Aligned_cols=28 Identities=18% Similarity=0.052 Sum_probs=23.2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 512 LYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 512 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
....++-++.+.|+|++|.++.+.+.+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4566788899999999999999999873
No 355
>PRK12798 chemotaxis protein; Reviewed
Probab=81.74 E-value=54 Score=31.96 Aligned_cols=150 Identities=19% Similarity=0.191 Sum_probs=97.5
Q ss_pred cCCHHHHHHHHhccCC----CCHhHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCCHH
Q 007871 355 CGSLDEARRIFYSMTK----KNVISYNVMIAG-LGMNGFGEEALKCFAQMETEGIPKDD----LIFLGVLIACSHSGLAT 425 (586)
Q Consensus 355 ~g~~~~a~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~ 425 (586)
.|+-+++.+.+..+.. +....|-.|+.+ .....++.+|+.+|+...- .-|.. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5788888888887763 345566666665 4456688888888887765 34443 23444455567788888
Q ss_pred HHHHHHHHhHHhhCCCCChHHHHH-HHHHHhhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007871 426 EGYRIFQSMKRHCGIEPKLEHYSC-LVDLLSRA---GELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEG 501 (586)
Q Consensus 426 ~A~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 501 (586)
++..+-.....++...|-..-|.. +...+.+. -..+.-..++..|.-.-....|..+...-.-.|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 888777777765555554433332 33333333 23455555666664333456777777778888898888888888
Q ss_pred HHhcC
Q 007871 502 LVELK 506 (586)
Q Consensus 502 ~~~~~ 506 (586)
+..+.
T Consensus 283 A~~L~ 287 (421)
T PRK12798 283 ALKLA 287 (421)
T ss_pred HHHhc
Confidence 88875
No 356
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.48 E-value=16 Score=31.59 Aligned_cols=73 Identities=15% Similarity=0.107 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhh--CCCCChHHHHHHHHHHhhcCCHHHH
Q 007871 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC--GIEPKLEHYSCLVDLLSRAGELEQA 463 (586)
Q Consensus 390 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 463 (586)
+.|.+.|-++...+.--++.....|...|. ..+.+++.+++.+..+-. +-.+|+..+..|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444555555544444434333333333333 344555555555444311 1133455555555555555555544
No 357
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=81.00 E-value=4.7 Score=35.50 Aligned_cols=84 Identities=13% Similarity=0.038 Sum_probs=35.7
Q ss_pred hhccCCHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHH-HHHHHHhcCChHH
Q 007871 418 CSHSGLATEGYRIFQSMKRHCGIEPKL-EHYSCLVDLLSRAGELEQALNIVESM-PMKPNLALWGT-LLLACRNHQNVTL 494 (586)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~-l~~~~~~~~~~~~ 494 (586)
|.....++.|...+.+.+. +.|+. .-|..=+.++.+..+++.+..--.+. ...|+..--.. +..+......++.
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 3334445555555544444 23333 33333444444555554444332222 23343332222 2222444455555
Q ss_pred HHHHHHHHHh
Q 007871 495 AEVVVEGLVE 504 (586)
Q Consensus 495 a~~~~~~~~~ 504 (586)
|+..+.++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 358
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=80.40 E-value=51 Score=30.84 Aligned_cols=117 Identities=10% Similarity=-0.087 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC-------CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 007871 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG-------ELEQALNIVESMPMKPNLALWGTLLLACRN----HQN 491 (586)
Q Consensus 423 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~ 491 (586)
+..+|..++++.... |..+.......+...|..-. +...|...+.++...-++.....+...|.. ..+
T Consensus 128 d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 128 DLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred CHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence 556666666666552 44332222333333333321 223566666665333344444444444322 347
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC---------------CchHHHHHHHHHHhCCCcc
Q 007871 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAG---------------MWEHALRIRKMMRKRKIKK 543 (586)
Q Consensus 492 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m~~~~~~~ 543 (586)
..+|..+|+++.+.+. ......+. .+...| +...|...+......+...
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 7888888888888776 55555555 555554 6667777777776666543
No 359
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=80.36 E-value=1e+02 Score=34.41 Aligned_cols=254 Identities=9% Similarity=-0.015 Sum_probs=145.8
Q ss_pred HHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCC-HHHHHHHHHhCCCCChhHHH
Q 007871 167 RSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGD-ISSARILFEHMPIKDLISWN 245 (586)
Q Consensus 167 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~ 245 (586)
..+.+.+.++|+......+..+.+.+..+....+...+..+|...-...+.++ ...+. ......+...+..+|..+..
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL-~~l~~~~~~~~~L~~~L~~~d~~VR~ 702 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGL-RELVEVLPPAPALRDHLGSPDPVVRA 702 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHH-HHHHhccCchHHHHHHhcCCCHHHHH
Confidence 34555556777777777777777777655434444444456555444554444 33321 11122233333456777766
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhH
Q 007871 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325 (586)
Q Consensus 246 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~ 325 (586)
..+..+...+.- ....+...+..+|...-...+.++.+.+..+. +..+.. .++...-.....++...+..+.
T Consensus 703 ~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~ 774 (897)
T PRK13800 703 AALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGA 774 (897)
T ss_pred HHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccc
Confidence 777766654321 12344555666777666666777776655432 222222 4566666666667766665432
Q ss_pred -HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 007871 326 -GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR-RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403 (586)
Q Consensus 326 -a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 403 (586)
+...+..+.+ .++..+-...+.++...|..+.+. .+...+..++...-...+.++...+. +++...+..+..
T Consensus 775 ~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~-- 848 (897)
T PRK13800 775 PAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT-- 848 (897)
T ss_pred hhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc--
Confidence 2333444333 346777778888888888765543 34444556676666667777777765 455666666654
Q ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 404 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
.|+...-...+.++.+.+....+...+..+.+
T Consensus 849 -D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 849 -DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred -CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 56666666666677665434456666666665
No 360
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.29 E-value=3.6 Score=21.86 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=10.1
Q ss_pred HHHHHHhhcCCHHHHHHHHH
Q 007871 449 CLVDLLSRAGELEQALNIVE 468 (586)
Q Consensus 449 ~l~~~~~~~g~~~~A~~~~~ 468 (586)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555443
No 361
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.14 E-value=5.5 Score=39.88 Aligned_cols=100 Identities=16% Similarity=0.019 Sum_probs=74.6
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCC--ChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHH
Q 007871 419 SHSGLATEGYRIFQSMKRHCGIEP--KLEHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTL 494 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~ 494 (586)
...|+...|...+..... ..| .......|...+.+.|...+|..++.+. . ....+.++..+..++....+++.
T Consensus 618 r~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 446888888888887754 333 2233456777777888888888887654 2 23355677778888888899999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHH
Q 007871 495 AEVVVEGLVELKADDCGLYVLLSNIYA 521 (586)
Q Consensus 495 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 521 (586)
|++.|+.+.++.|+++.+-+.|..+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999998888776554
No 362
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=80.05 E-value=4.2 Score=37.09 Aligned_cols=85 Identities=11% Similarity=0.032 Sum_probs=61.3
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCeeEEEECCeEeEEecCCCC
Q 007871 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIF 565 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (586)
..+.|+.++|..+|+.+..+.|.++.++..++......++.-+|.++|-+.. ..+|+.+- +.+..++.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL----tisP~nse--------ALvnR~RT 193 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKAL----TISPGNSE--------ALVNRART 193 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheee----eeCCCchH--------HHhhhhcc
Confidence 4577899999999999999999999999999888887788888888875543 33444433 33445667
Q ss_pred CCChhHHHHHHHHHHHH
Q 007871 566 DVQSEELELVIQSFVKT 582 (586)
Q Consensus 566 ~~~~~~~~~~l~~~~~~ 582 (586)
-|-+.+|.+..=+....
T Consensus 194 ~plV~~iD~r~l~svds 210 (472)
T KOG3824|consen 194 TPLVSAIDRRMLRSVDS 210 (472)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 77777777654444433
No 363
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.48 E-value=24 Score=26.43 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=42.7
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 007871 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311 (586)
Q Consensus 248 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~ 311 (586)
+..+...|++++|..+.+.+.-||...|-+|... +.|-.+++..-+..|...| .|....|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3456778888888888888877888888766543 5566667777777777766 55555543
No 364
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=79.38 E-value=71 Score=31.89 Aligned_cols=234 Identities=9% Similarity=0.054 Sum_probs=118.2
Q ss_pred HHHHHHhhCCC--CChhHHHHHHHHHHhCC------CchHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccCChh-HHH
Q 007871 259 AAQQLFNEMPE--RNVFSWSIMIDGYAQHG------NPKEALYLFREMLCQG-VRP-DVISVMGAISACAQVGALD-LGK 327 (586)
Q Consensus 259 ~A~~~~~~~~~--~~~~~~~~l~~~~~~~~------~~~~A~~~~~~m~~~g-~~~-~~~~~~~l~~~~~~~~~~~-~a~ 327 (586)
....+|++..+ ++...|+..|..|...- .......+++.....+ ..+ ....|..+...+...+... .|.
T Consensus 300 ~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~ 379 (568)
T KOG2396|consen 300 RCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAV 379 (568)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHH
Confidence 33456665554 45566666666654322 3445555565555432 233 3334555555554444332 222
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcC-CHHHH-HHHHhccC----CCCHhHHHHHHHHHHhcCC-hHH--HHHHHHH
Q 007871 328 WIHVFMKRSRITMDMIVQTALIDMYMKCG-SLDEA-RRIFYSMT----KKNVISYNVMIAGLGMNGF-GEE--ALKCFAQ 398 (586)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a-~~~~~~~~----~~~~~~~~~l~~~~~~~~~-~~~--A~~~~~~ 398 (586)
.+. ..++..+...+..-+....+.. +.+-. .+.+..+. .+....|+... .|+ ... -..++..
T Consensus 380 ~l~----~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a 450 (568)
T KOG2396|consen 380 KLT----TELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISA 450 (568)
T ss_pred Hhh----HHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHH
Confidence 222 2223334444444444433221 21111 11122222 23333444433 122 111 1122333
Q ss_pred HHHCCCCCCHHHH-HHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh--cCCHHHHHHHHHhC--CCC
Q 007871 399 METEGIPKDDLIF-LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR--AGELEQALNIVESM--PMK 473 (586)
Q Consensus 399 m~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~--~~~ 473 (586)
.... ..|+..|+ +.++.-+.+.|-+.+|..++..+.. -.+|+...|..++..-.. ..+...+..+++.+ ..-
T Consensus 451 ~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg 527 (568)
T KOG2396|consen 451 LLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG 527 (568)
T ss_pred HHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC
Confidence 3333 34444333 4455666777888888888888877 456677777777654321 22367777777777 222
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 474 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
.|+..|...+.--..+|..+.+-.++.++.+
T Consensus 528 ~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 528 ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 6777887777776778888777777766665
No 365
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=79.09 E-value=84 Score=33.08 Aligned_cols=179 Identities=16% Similarity=0.116 Sum_probs=90.9
Q ss_pred HHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhccCC-CCHh----------HHHHHHHHHHhcCChHHH
Q 007871 327 KWIHVFMKRSRITMD---MIVQTALIDMYMKCGSLDEARRIFYSMTK-KNVI----------SYNVMIAGLGMNGFGEEA 392 (586)
Q Consensus 327 ~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~----------~~~~l~~~~~~~~~~~~A 392 (586)
..++.+|...--.|+ ..+...++-.|....+++...++.+.+.. ||.. .|...++---+-|+-++|
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakA 262 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKA 262 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHH
Confidence 344555544422232 23445555566666667776666665553 2211 122222222344666777
Q ss_pred HHHHHHHHHC--CCCCCHHH-----HHHHH--HHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh--------
Q 007871 393 LKCFAQMETE--GIPKDDLI-----FLGVL--IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS-------- 455 (586)
Q Consensus 393 ~~~~~~m~~~--g~~p~~~~-----~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------- 455 (586)
+...-.|.+. .+.||... |.-+. ..|-..+..+.|.++|++.-+ +.|+...=-.+...+.
T Consensus 263 L~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~aaG~~Fen 339 (1226)
T KOG4279|consen 263 LNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLRAAGEHFEN 339 (1226)
T ss_pred HHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHHHhhhhccc
Confidence 7766666543 24455432 22111 123445566777777776633 4555433222222222
Q ss_pred ----------------hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 007871 456 ----------------RAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSN 518 (586)
Q Consensus 456 ----------------~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 518 (586)
+.|.+++-.++++-. ..+.+-.-.+|+.+|....+.|.++.|+.-..-..+..
T Consensus 340 s~Elq~IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~men 408 (1226)
T KOG4279|consen 340 SLELQQIGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMEN 408 (1226)
T ss_pred hHHHHHHHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHH
Confidence 333333322222211 12334456789999999999999999886555444433
No 366
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.76 E-value=16 Score=29.13 Aligned_cols=23 Identities=13% Similarity=0.028 Sum_probs=10.5
Q ss_pred HHHHHHHhcCCchHHHHHHHHHH
Q 007871 515 LLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 515 ~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
.|+-.+.+.|+|+.++++.+.+.
T Consensus 76 YLAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 76 YLAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHH
Confidence 33444444444444444444443
No 367
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=78.53 E-value=32 Score=28.04 Aligned_cols=89 Identities=11% Similarity=0.164 Sum_probs=51.3
Q ss_pred HHHcCCCCChhh--HhHHHHHhccCCCCChHHHHHHHhccC---------CCCcchHHHHHHHHhcCCC-chhHHHHHHH
Q 007871 35 LTTNDLITEPFT--LSQLLMSLTSPNTLNMDQAERLFNQIY---------QPNTYMHNTMIRGYTQSSN-PQKALSFYVN 102 (586)
Q Consensus 35 ~~~~~~~~~~~~--~~~ll~~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~ll~~~~~~~~-~~~A~~~~~~ 102 (586)
+.+.+..++..+ .+.++. -.+.. ++.....++++.+. ..+...|+.++.+..+... ---+..+|.-
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~-hl~~~-~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILN-HLASY-QNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred hhhcccChhHHHHHHHHHHH-HHHHc-cchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 343444444432 356665 33444 56666666666651 2344567777777755544 3345666777
Q ss_pred hHhCCCCCCcccHHHHHHHHhcc
Q 007871 103 MKRKGLLVDNYTYPFVLKACGVL 125 (586)
Q Consensus 103 m~~~~~~~~~~~~~~ll~~~~~~ 125 (586)
|++.+.+++..-|..+|.++.+.
T Consensus 106 Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHHHcC
Confidence 76666677777777777766554
No 368
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.06 E-value=4.3 Score=21.92 Aligned_cols=30 Identities=20% Similarity=-0.063 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007871 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 478 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 507 (586)
.+..+...+...|+++.|...+++.++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 566777888999999999999999988766
No 369
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=77.45 E-value=82 Score=31.56 Aligned_cols=159 Identities=7% Similarity=0.008 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHH
Q 007871 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIA 381 (586)
Q Consensus 305 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~ 381 (586)
.|.....+++..+.......-++.+..+|...| .+-..+..++++|... ..++-..+|+++.+ .|++.-..|+.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 344445555555555555555555555555554 2334455555555555 33444445554332 22222222333
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh
Q 007871 382 GLGMNGFGEEALKCFAQMETEGIPKDD------LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455 (586)
Q Consensus 382 ~~~~~~~~~~A~~~~~~m~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (586)
.|-+ ++.+.+...|.+.... +-|.. ..|.-+... -..+.+....+...+....|...-...+.-+-.-|.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 3332 5555555555554432 11210 122222211 133455555555555555455555555555556666
Q ss_pred hcCCHHHHHHHHHhC
Q 007871 456 RAGELEQALNIVESM 470 (586)
Q Consensus 456 ~~g~~~~A~~~~~~~ 470 (586)
...++++|++++..+
T Consensus 217 ~~eN~~eai~Ilk~i 231 (711)
T COG1747 217 ENENWTEAIRILKHI 231 (711)
T ss_pred cccCHHHHHHHHHHH
Confidence 666666666666644
No 370
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.36 E-value=6.3 Score=33.16 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC-----------chHHHHHHHHHHh
Q 007871 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM-----------WEHALRIRKMMRK 538 (586)
Q Consensus 492 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~ 538 (586)
+++|+.-|++++.++|+...++..++.+|...+. |++|.+.|++..+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh
Confidence 5567778888888999999999999998876654 4445555555544
No 371
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.12 E-value=2.1 Score=39.77 Aligned_cols=56 Identities=16% Similarity=0.073 Sum_probs=25.9
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007871 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 541 (586)
+.+.+....|++=+..+++++|+...-|-.-..+..-.|+|++|...+....+.++
T Consensus 158 ~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 158 FLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred eeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence 44444444444444444444444444444444444444444444444444444443
No 372
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.03 E-value=60 Score=32.97 Aligned_cols=51 Identities=16% Similarity=0.067 Sum_probs=25.7
Q ss_pred HHhcCChHHHHHHHHHHHhcCCC-CcchHHHHHHHH-HhcCCchHHHHHHHHH
Q 007871 486 CRNHQNVTLAEVVVEGLVELKAD-DCGLYVLLSNIY-ADAGMWEHALRIRKMM 536 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~m 536 (586)
+.+.|-+..|.++.+.+.+++|. ||.....+++.| .++.+|.--+++++..
T Consensus 352 l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 352 LAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34455555555555555555555 555555555444 2444454444444444
No 373
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=76.48 E-value=5.5 Score=22.05 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=24.5
Q ss_pred CChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 007871 490 QNVTLAEVVVEGLVELKADDCGLYVLLSNI 519 (586)
Q Consensus 490 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 519 (586)
|+.+.+..+|++++...|.++.+|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888999999998888888888877643
No 374
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=76.48 E-value=74 Score=33.63 Aligned_cols=85 Identities=11% Similarity=0.167 Sum_probs=34.6
Q ss_pred HHHHHhcCCHHHHHHHHhccC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhh---ccC
Q 007871 349 IDMYMKCGSLDEARRIFYSMT--KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKDDLIFLGVLIACS---HSG 422 (586)
Q Consensus 349 ~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~---~~g 422 (586)
..++.-.|.++.|.+++-... ..+.+.+...+..|.-.+-.+... ..+.... -.|.+..+..|+..|. ...
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 445556788888888777622 233333333333322111111111 2222210 1111245666666664 456
Q ss_pred CHHHHHHHHHHhHH
Q 007871 423 LATEGYRIFQSMKR 436 (586)
Q Consensus 423 ~~~~A~~~~~~~~~ 436 (586)
++.+|.+++-.+..
T Consensus 342 d~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 342 DPREALQYLYLICL 355 (613)
T ss_dssp -HHHHHHHHHGGGG
T ss_pred CHHHHHHHHHHHHH
Confidence 77888888777655
No 375
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=75.00 E-value=88 Score=30.70 Aligned_cols=58 Identities=14% Similarity=0.201 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 007871 346 TALIDMYMKCGSLDEARRIFYSMTKK---NVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403 (586)
Q Consensus 346 ~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 403 (586)
..|+.-|...|++.+|.+.++++.-| ....+.+++.+.-+.|+....+.+++..-..|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 34566666777777777777766654 34556666666666666665556665555544
No 376
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=74.95 E-value=15 Score=34.26 Aligned_cols=91 Identities=13% Similarity=0.039 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 007871 446 HYSCLVDLLSRAGELEQALNIVESM-P---MKP--NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519 (586)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 519 (586)
.|.-=++-|.+..++..|...|.+. . ..| +...|..-..+-.-.|++..++.=..+++..+|.+..+|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 4444566777888888888888765 1 223 456677666676778999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHH
Q 007871 520 YADAGMWEHALRIRKMM 536 (586)
Q Consensus 520 ~~~~g~~~~A~~~~~~m 536 (586)
+....++++|....+..
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999888877665
No 377
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=74.72 E-value=65 Score=29.07 Aligned_cols=75 Identities=16% Similarity=-0.048 Sum_probs=43.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007871 278 MIDGYAQHGNPKEALYLFREMLCQG--VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352 (586)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 352 (586)
-+..-.+.|++++|.+.|+.+...- -+-...+...++-++.+.++.+.|....++....-......-|-..+.+.
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 3444556788888888888877542 11233444555566677777777777777766654333333344444433
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.67 E-value=11 Score=26.76 Aligned_cols=19 Identities=16% Similarity=-0.026 Sum_probs=8.6
Q ss_pred HHHHHHHHhhccCCHHHHH
Q 007871 410 IFLGVLIACSHSGLATEGY 428 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~ 428 (586)
++..++.+++..|++.+++
T Consensus 45 ~lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 45 VLGYLIQAHMEWGKYREML 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.64 E-value=8 Score=27.38 Aligned_cols=45 Identities=13% Similarity=0.094 Sum_probs=33.9
Q ss_pred hcCChHHHHHHHHHHHhcCCCCcchHHH---HHHHHHhcCCchHHHHH
Q 007871 488 NHQNVTLAEVVVEGLVELKADDCGLYVL---LSNIYADAGMWEHALRI 532 (586)
Q Consensus 488 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~---l~~~~~~~g~~~~A~~~ 532 (586)
...+.++|+..++++++..++.+.-+.. ++.+|+..|++.+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888999999888877665554444 55668888888887765
No 380
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=72.65 E-value=38 Score=25.41 Aligned_cols=85 Identities=12% Similarity=0.109 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 007871 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402 (586)
Q Consensus 323 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 402 (586)
.++|..|-+.+...+-. ...+-..-+..+.+.|++++|..+.+...-||...|-+|... +.|-.+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 34555555554444311 222222234456678888888888888888888888776543 566667777777777776
Q ss_pred CCCCCHHHH
Q 007871 403 GIPKDDLIF 411 (586)
Q Consensus 403 g~~p~~~~~ 411 (586)
| .|....|
T Consensus 98 g-~p~lq~F 105 (115)
T TIGR02508 98 G-DPRLQTF 105 (115)
T ss_pred C-CHHHHHH
Confidence 5 3433333
No 381
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=71.30 E-value=27 Score=27.42 Aligned_cols=59 Identities=19% Similarity=0.314 Sum_probs=43.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 007871 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452 (586)
Q Consensus 392 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 452 (586)
..+-+..+..-.+.|++.....-+++|.+.+|+..|.++|+-++.++| +....|..+++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYVK 126 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHHH
Confidence 344555566667889999999999999999999999999998887543 33335555543
No 382
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.18 E-value=1.3e+02 Score=32.86 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=12.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHH
Q 007871 447 YSCLVDLLSRAGELEQALNIVE 468 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~ 468 (586)
|....-.+.+.|+.++|+.++-
T Consensus 687 ~ee~aill~rl~khe~aL~Iyv 708 (877)
T KOG2063|consen 687 YEERAILLGRLGKHEEALHIYV 708 (877)
T ss_pred HHHHHHHHhhhhhHHHHHHHHH
Confidence 3344444556777777776653
No 383
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.82 E-value=25 Score=30.75 Aligned_cols=126 Identities=13% Similarity=-0.015 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHh-hCCCCChHHHHHHHHH
Q 007871 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRH-CGIEPKLEHYSCLVDL 453 (586)
Q Consensus 376 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~ 453 (586)
.+.-++.+.+.+...+++...++-++. +| |..+-..++..++-.|+|++|..-++.+..- ....+...+|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344566778888899999888877764 44 4456667778888899999998777766440 1223334556665553
Q ss_pred HhhcCCHHHHH-HHHHhC--C---CCCCHHHHHH-HHHHH-HhcC-ChHHHHHHHHHHHhcCCCCcc
Q 007871 454 LSRAGELEQAL-NIVESM--P---MKPNLALWGT-LLLAC-RNHQ-NVTLAEVVVEGLVELKADDCG 511 (586)
Q Consensus 454 ~~~~g~~~~A~-~~~~~~--~---~~p~~~~~~~-l~~~~-~~~~-~~~~a~~~~~~~~~~~p~~~~ 511 (586)
- .+. ++|..- + ..| ...|.. +..+. +.++ .-+.+..+-+.+.+..|..+.
T Consensus 82 e-------a~R~evfag~~~Pgflg~p-~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 82 E-------AARNEVFAGGAVPGFLGGP-SPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred H-------HHHHHHhccCCCCCCcCCC-CHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 2 222 233322 1 112 333433 33332 2233 444455566666666665443
No 384
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.72 E-value=11 Score=23.32 Aligned_cols=24 Identities=17% Similarity=-0.002 Sum_probs=13.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 007871 379 MIAGLGMNGFGEEALKCFAQMETE 402 (586)
Q Consensus 379 l~~~~~~~~~~~~A~~~~~~m~~~ 402 (586)
+..+|...|+.+.|..++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555556666666666555543
No 385
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=69.47 E-value=3.8 Score=40.01 Aligned_cols=102 Identities=9% Similarity=0.032 Sum_probs=73.2
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 007871 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPK-LEHYSCLVDLLSRAGELEQALNIVESM-PMKPN-LALWGTLLLACRNHQ 490 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~ 490 (586)
-+..+...++++.|..++.++++ ..|| ...|..=..++.+.+++..|+.=+.++ ...|. ...|..=..+|...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34556677889999999999887 3454 444444457888889888888766555 44453 344555556677888
Q ss_pred ChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 007871 491 NVTLAEVVVEGLVELKADDCGLYVLLSN 518 (586)
Q Consensus 491 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 518 (586)
.+.+|...|+......|+++.+...+-.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 8999999999999999999877665543
No 386
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=68.54 E-value=10 Score=33.17 Aligned_cols=57 Identities=12% Similarity=0.086 Sum_probs=43.1
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
..+.+|.+.+.+++.++.++-|.....|..++..-.++|+++.|.+.|++..+....
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 345677777788888888888888888888887778888888888888777765443
No 387
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=68.13 E-value=19 Score=26.79 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=33.9
Q ss_pred HHhcCChHHHHHHHHHHHhcCCC----C-----cchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 486 CRNHQNVTLAEVVVEGLVELKAD----D-----CGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
..+.||+..|.+.+.+..+.... . ......++.+....|++++|...+++.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34667777776666665553211 1 223445667778888888888888877543
No 388
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=67.06 E-value=39 Score=30.87 Aligned_cols=87 Identities=9% Similarity=0.040 Sum_probs=49.6
Q ss_pred HHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHH-----
Q 007871 84 IRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYS----- 158 (586)
Q Consensus 84 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----- 158 (586)
|.+++..++|.+++...-+.-+.--+....+...-|-.|.+.+++..+.++-....+..-.-+...|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 678888888888877655443322222334444455556778888888877777766432223334555554443
Q ss_pred hcCChhHHHHHh
Q 007871 159 KCGHMGCARSVF 170 (586)
Q Consensus 159 ~~g~~~~a~~~~ 170 (586)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 244445554444
No 389
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.21 E-value=87 Score=27.03 Aligned_cols=86 Identities=10% Similarity=0.015 Sum_probs=42.3
Q ss_pred HhccCChhHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhH--HHHHHHHHHhcCChHHH
Q 007871 317 CAQVGALDLGKWIHVFMKRSRITMD--MIVQTALIDMYMKCGSLDEARRIFYSMTKKNVIS--YNVMIAGLGMNGFGEEA 392 (586)
Q Consensus 317 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A 392 (586)
+...++++.|...++.........+ ..+--.|.......|.+++|+..++....++-.. ...-...+...|+-++|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~A 178 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEA 178 (207)
T ss_pred HHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHH
Confidence 4555666666666555443311100 1112234445555666666666666555443322 22233445666666666
Q ss_pred HHHHHHHHHC
Q 007871 393 LKCFAQMETE 402 (586)
Q Consensus 393 ~~~~~~m~~~ 402 (586)
..-|++..+.
T Consensus 179 r~ay~kAl~~ 188 (207)
T COG2976 179 RAAYEKALES 188 (207)
T ss_pred HHHHHHHHHc
Confidence 6666665554
No 390
>PF13934 ELYS: Nuclear pore complex assembly
Probab=66.09 E-value=99 Score=27.67 Aligned_cols=70 Identities=19% Similarity=0.182 Sum_probs=30.1
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007871 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 487 (586)
++.++...|+.+.|..+++...- ...+......+... ..++.+.+|..+-+.....-....+..++..+.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 44444445555555555554322 11111222222222 445566666655555432222334444444444
No 391
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=65.94 E-value=1.4e+02 Score=29.32 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=18.7
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHhh
Q 007871 561 SGEIFDVQSEELELVIQSFVKTTIE 585 (586)
Q Consensus 561 ~~~~~~~~~~~~~~~l~~~~~~~~~ 585 (586)
-.|+..|.+++-++.+.+....+-+
T Consensus 353 LAHGf~~vs~~~~e~l~~~~~~l~~ 377 (379)
T PF09670_consen 353 LAHGFKPVSEEDYEELRDVVEELIN 377 (379)
T ss_pred hhcCCCcCCHHHHHHHHHHHHHHHh
Confidence 3455678999999888888777654
No 392
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.85 E-value=36 Score=26.76 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=38.0
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 469 SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 469 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
.+..-|++......+.+|.+.+|+..|.++++-+...-++...+|-.++
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3456789999999999999999999999999988776655555555444
No 393
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=65.84 E-value=33 Score=27.86 Aligned_cols=64 Identities=17% Similarity=0.021 Sum_probs=45.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 007871 460 LEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMW 526 (586)
Q Consensus 460 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 526 (586)
-+.|.++.+-|+ ...............|++..|.++.+.++..+|+|.......+.+|.+.|.-
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 345666666664 2233334445567899999999999999999999999999999888776643
No 394
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.81 E-value=1.1e+02 Score=27.90 Aligned_cols=198 Identities=13% Similarity=0.042 Sum_probs=114.5
Q ss_pred CCChhHHHHHHHH-HHhCCCchHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCChhHHHHHHHHHHHc---CC--C
Q 007871 269 ERNVFSWSIMIDG-YAQHGNPKEALYLFREMLCQGVRPDV---ISVMGAISACAQVGALDLGKWIHVFMKRS---RI--T 339 (586)
Q Consensus 269 ~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~m~~~g~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~ 339 (586)
+||+..-|..-.+ -.+..++++|+.-|++.++..-.-.. .....++....+.+++++....|.++... .+ .
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 3565543332221 13455799999999998875322223 34556788889999999998888876432 12 1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CCHh----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----C
Q 007871 340 MDMIVQTALIDMYMKCGSLDEARRIFYSMTK-----KNVI----SYNVMIAGLGMNGFGEEALKCFAQMETEGIP----K 406 (586)
Q Consensus 340 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~----~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~----p 406 (586)
-+..+.+++++......+.+-..++++.-.+ .+.. +-..|...|...+.+.+..++++++...-.. .
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 2344567777766666666655555543321 2222 2345667777778888888888777653111 1
Q ss_pred CH-------HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHH----HHHhhcCCHHHHHHH
Q 007871 407 DD-------LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV----DLLSRAGELEQALNI 466 (586)
Q Consensus 407 ~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~ 466 (586)
|. ..|..=+..|-.+.+-..-..++++...-..--|.+.+...+- +...+.|++++|..-
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhH
Confidence 11 2355555666666666666667766544223334444443332 223456777776553
No 395
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=65.62 E-value=56 Score=25.96 Aligned_cols=43 Identities=12% Similarity=0.049 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 494 LAEVVVEGLVELK--ADDCGLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 494 ~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
.+..+|+.+...+ ...+..|...+..+...|++++|.++|+.-
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 7788888887754 667778888888889999999998888753
No 396
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.79 E-value=54 Score=26.76 Aligned_cols=83 Identities=11% Similarity=0.027 Sum_probs=65.4
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHhHhCC-----CCCCcccHHHHHHHHhccCC-chHHHHHHHHHHHhCCCCchhHHHH
Q 007871 79 MHNTMIRGYTQSSNPQKALSFYVNMKRKG-----LLVDNYTYPFVLKACGVLMG-LVEGTEIHGEVVKMGFLCDVFVVNG 152 (586)
Q Consensus 79 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 152 (586)
..|.++.-....+++...+.+++.+.... -..+...|+.++++.++... --.+..+|..+.+.+.++++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 36788888888888888888888874321 13466789999999977766 5567889999999889999999999
Q ss_pred HHHHHHhcC
Q 007871 153 LIGMYSKCG 161 (586)
Q Consensus 153 li~~~~~~g 161 (586)
+|.++.+..
T Consensus 121 li~~~l~g~ 129 (145)
T PF13762_consen 121 LIKAALRGY 129 (145)
T ss_pred HHHHHHcCC
Confidence 999887753
No 397
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.07 E-value=89 Score=28.66 Aligned_cols=53 Identities=9% Similarity=-0.112 Sum_probs=25.5
Q ss_pred HHHHHhcCCHHHHHHHH----hccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007871 349 IDMYMKCGSLDEARRIF----YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET 401 (586)
Q Consensus 349 ~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 401 (586)
|++++..++|.++.... +.-.+-.+......|-.|.+.+.+..+.++-..-..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 45555556665554432 222222334444455555555555555555444433
No 398
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.56 E-value=1.5e+02 Score=28.86 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC------CChhHHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 007871 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPE------RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ 301 (586)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 301 (586)
..+.-+.+.|..+|+++.|++.|.+..+ ..+..|-.+|..-.-.|+|.....+..+..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 4567788899999999999999999664 33456777777778888998888888877653
No 399
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.28 E-value=1e+02 Score=27.58 Aligned_cols=117 Identities=11% Similarity=-0.061 Sum_probs=69.4
Q ss_pred HHhcCCHHHHHHHHhccC--CCCHhH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHH
Q 007871 352 YMKCGSLDEARRIFYSMT--KKNVIS-YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL-IFLGVLIACSHSGLATEG 427 (586)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~--~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A 427 (586)
|....+++.|...|.+.. .|++.+ |+.-+-.+.+..+++.+..=-.+.++ +.||.. ....+.........++.|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 334456777777776655 465544 45556667778888887776666666 667764 344455556677778888
Q ss_pred HHHHHHhHH---hhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 428 YRIFQSMKR---HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 428 ~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
+..+.+... ...+++.......|..+=-..=...+...+.++.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888877643 1233444455555554433333444444445444
No 400
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=62.89 E-value=2.1e+02 Score=30.33 Aligned_cols=188 Identities=7% Similarity=0.012 Sum_probs=102.1
Q ss_pred CCChhhHhHHHHHhccCCCCChHHHHHHHhcc-CCC--CcchHHHHHHHHh-cCCCchhHHHHHHHhHhCCCCCCcc---
Q 007871 41 ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI-YQP--NTYMHNTMIRGYT-QSSNPQKALSFYVNMKRKGLLVDNY--- 113 (586)
Q Consensus 41 ~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~-~~~--~~~~~~~ll~~~~-~~~~~~~A~~~~~~m~~~~~~~~~~--- 113 (586)
+.+...|..+|. .-.++ ++.+.+ .. .+| ...++-.+...+. ...+.+.|...+++.....-+++..
T Consensus 27 ~~~l~~Y~kLI~-~ai~C---L~~~~~---~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 27 EEQLKQYYKLIA-TAIKC---LEAVLK---QFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hhhHHHHHHHHH-HHHHH---HHHHhc---cCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 456677777777 44444 222222 22 222 3445666666665 6688999999999875543332222
Q ss_pred --cHHHHHHHHhccCCchHHHHHHHHHHHhC----CCCchhHHHHH-HHHHHhcCChhHHHHHhccCCC-----CCh--h
Q 007871 114 --TYPFVLKACGVLMGLVEGTEIHGEVVKMG----FLCDVFVVNGL-IGMYSKCGHMGCARSVFEGSEI-----KDL--V 179 (586)
Q Consensus 114 --~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~-----~~~--~ 179 (586)
....+++.+.+.+... |...++..++.- ..+-...+..+ +..+...+|+..|.+.++.+.. .|. .
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 1234455555555444 888888766542 22223344444 3344444899999988876542 232 2
Q ss_pred hHHHHHHHH--HhCCChhHHHHHHhhCC-------------CCChhHHHHHHHHH-hhccCCHHHHHHHHHhC
Q 007871 180 SWNLVLRGF--VECGEMGKAREVFDEMP-------------QKDAISWSIMIDGY-RKKKGDISSARILFEHM 236 (586)
Q Consensus 180 ~~~~l~~~~--~~~g~~~~A~~~~~~~~-------------~~~~~~~~~ll~~~-~~~~g~~~~a~~~~~~~ 236 (586)
++-.++.+. .+.+..+++.+.++.+. .|-...|..++..+ ....|+++.+...++.+
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333 34555666666665552 12334555555543 23566666666665543
No 401
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=62.09 E-value=1.6e+02 Score=28.75 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=37.1
Q ss_pred CChhHHHHHHHHHHh---CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 007871 270 RNVFSWSIMIDGYAQ---HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322 (586)
Q Consensus 270 ~~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~ 322 (586)
.+-..+..+++++.+ ..+++.|+-++-.|++.|-.|-...-..++.+....|.
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGl 299 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGL 299 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC
Confidence 444555566777654 47889999999999998876776666666666655553
No 402
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=61.87 E-value=69 Score=24.42 Aligned_cols=80 Identities=13% Similarity=0.140 Sum_probs=43.7
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007871 321 GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME 400 (586)
Q Consensus 321 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 400 (586)
...++|..|.+.+...+. ....+--.-+..+.+.|+|++|...=.....||...|-+|.. .+.|-.+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 345667777776666653 222233334445667788888844444444577777766543 35677777777777666
Q ss_pred HCC
Q 007871 401 TEG 403 (586)
Q Consensus 401 ~~g 403 (586)
..|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 554
No 403
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=61.86 E-value=72 Score=29.14 Aligned_cols=60 Identities=25% Similarity=0.128 Sum_probs=52.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 541 (586)
+=.++...++++.|....++.+.++|.++.-+..-+-+|.+.|.+.-|++-++...+...
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P 246 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCP 246 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 334578899999999999999999999999999999999999999999999988766543
No 404
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=61.68 E-value=2.2e+02 Score=30.20 Aligned_cols=162 Identities=12% Similarity=0.068 Sum_probs=91.8
Q ss_pred HhhccCCHHHHHHHHHHhHHhhCCCCCh--HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCh
Q 007871 417 ACSHSGLATEGYRIFQSMKRHCGIEPKL--EHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW--GTLLLACRNHQNV 492 (586)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~ 492 (586)
+|..-|+-++|..+..++..+ -.|-. .-.-+++-+|+-.|+..-..+++.-.-..+|...- ..+.-++.-..+.
T Consensus 510 aL~~ygrqe~Ad~lI~el~~d--kdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRD--KDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcC--CchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecCh
Confidence 455567777888888888773 22221 12334566777888877666666654334444333 3334446667788
Q ss_pred HHHHHHHHHHHhcCCCCc--chHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCeeEEEECCeEeEEecCCCCCCChh
Q 007871 493 TLAEVVVEGLVELKADDC--GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSE 570 (586)
Q Consensus 493 ~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (586)
+....+.+-+.+..-++. .+-..|+-+|.-.|. .+|..+++.|...-..--.. .+++.-.+-..-..+.+.|++.
T Consensus 588 ~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~D~~~fVRQ--gAlIa~amIm~Q~t~~~~pkv~ 664 (929)
T KOG2062|consen 588 EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTSDPVDFVRQ--GALIALAMIMIQQTEQLCPKVN 664 (929)
T ss_pred hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhcChHHHHHH--HHHHHHHHHHHhcccccCchHH
Confidence 888887777766542222 233345545555554 67888998886532111000 0111111111234567889999
Q ss_pred HHHHHHHHHHHHH
Q 007871 571 ELELVIQSFVKTT 583 (586)
Q Consensus 571 ~~~~~l~~~~~~~ 583 (586)
.+...+.++.-..
T Consensus 665 ~frk~l~kvI~dK 677 (929)
T KOG2062|consen 665 GFRKQLEKVINDK 677 (929)
T ss_pred HHHHHHHHHhhhh
Confidence 8888887766543
No 405
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=60.48 E-value=1.5e+02 Score=27.85 Aligned_cols=20 Identities=15% Similarity=0.009 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCCCcchH
Q 007871 494 LAEVVVEGLVELKADDCGLY 513 (586)
Q Consensus 494 ~a~~~~~~~~~~~p~~~~~~ 513 (586)
.|.+...++.+.+|.-|...
T Consensus 380 ~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHH
Confidence 45666677777777655443
No 406
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=60.45 E-value=64 Score=23.54 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=23.1
Q ss_pred hcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHH
Q 007871 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392 (586)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 392 (586)
..|+.+.|.+++..+. ..+..|..++.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466666666666666 5666666666666665554433
No 407
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=60.00 E-value=1.9e+02 Score=28.78 Aligned_cols=172 Identities=8% Similarity=-0.078 Sum_probs=81.3
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHH
Q 007871 119 LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAR 198 (586)
Q Consensus 119 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 198 (586)
|.++...| ..+...+-...... ++...+.....++....+......+.+.+..++.........++...+...-.-
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~ 120 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEP 120 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHH
Confidence 45555555 34455444444322 233333333333332222222444455555556656677777777766666555
Q ss_pred HHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHH
Q 007871 199 EVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM 278 (586)
Q Consensus 199 ~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 278 (586)
.+...+..++...-...+.++ ...+ .+-...+..-+..+|..+...-+.++...+..+..-.+..-...+|...-..-
T Consensus 121 ~L~~~L~~~~p~vR~aal~al-~~r~-~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA 198 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAAL-GAHR-HDPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAA 198 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHH-Hhhc-cChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHH
Confidence 555555555555444555555 3322 11222222223345555555555555555554333333322334555555555
Q ss_pred HHHHHhCCCchHHHHHHHH
Q 007871 279 IDGYAQHGNPKEALYLFRE 297 (586)
Q Consensus 279 ~~~~~~~~~~~~A~~~~~~ 297 (586)
+.+....|. ..|...+..
T Consensus 199 ~~al~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 199 LEAGLLAGS-RLAWGVCRR 216 (410)
T ss_pred HHHHHHcCC-HhHHHHHHH
Confidence 555555555 444444444
No 408
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=59.83 E-value=42 Score=29.13 Aligned_cols=30 Identities=10% Similarity=-0.045 Sum_probs=10.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 475 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
++..+..++.++...|+.++|..+.+++..
T Consensus 143 ~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 143 DPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 409
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=59.75 E-value=1.4e+02 Score=27.40 Aligned_cols=160 Identities=13% Similarity=0.105 Sum_probs=79.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHhhccCCHHHHHHHHHHhH---HhhCCCCChHHHHH
Q 007871 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDL-------IFLGVLIACSHSGLATEGYRIFQSMK---RHCGIEPKLEHYSC 449 (586)
Q Consensus 380 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~~ 449 (586)
.+-..+.+++++|+..+.+....|+..+.. +...+...|...|++..-.+...... .++.-+........
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 344556778888888888888888776654 45556666777776655444333222 11122223334444
Q ss_pred HHHHHhhc-CCHHHHHHHHHhC---CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHH----hcC--CCCcchHH
Q 007871 450 LVDLLSRA-GELEQALNIVESM---PMKPN-----LALWGTLLLACRNHQNVTLAEVVVEGLV----ELK--ADDCGLYV 514 (586)
Q Consensus 450 l~~~~~~~-g~~~~A~~~~~~~---~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~--p~~~~~~~ 514 (586)
|+..+... ..++.-+.+.+.. ..+.. ...-.-++..+.+.|.+.+|+....-+. +.+ |.-...+.
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhl 169 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHL 169 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhh
Confidence 44443322 2333333333322 00000 1111224444566666666665544332 222 33344444
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 515 LLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 515 ~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.=..+|.+..+..++..-+-..+-.
T Consensus 170 lESKvyh~irnv~KskaSLTaArt~ 194 (421)
T COG5159 170 LESKVYHEIRNVSKSKASLTAARTL 194 (421)
T ss_pred hhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 4555666666666665555554443
No 410
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=57.47 E-value=66 Score=23.49 Aligned_cols=65 Identities=14% Similarity=0.119 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHH
Q 007871 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKA 197 (586)
Q Consensus 131 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 197 (586)
+.++++.+.+.|+- +......+-..-...|+.+.|.+++..++ +.+..|...+.++...|+-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 34555555555531 11222222221224567777777777777 6666777777777766665444
No 411
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=56.04 E-value=39 Score=19.76 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=7.1
Q ss_pred HHHHHHhcCCchHHHHH
Q 007871 516 LSNIYADAGMWEHALRI 532 (586)
Q Consensus 516 l~~~~~~~g~~~~A~~~ 532 (586)
++-.+..+|++++|+.+
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 34444444444444444
No 412
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=55.73 E-value=1.2e+02 Score=26.08 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=13.3
Q ss_pred HHhcCCchHHHHHHHHHHh
Q 007871 520 YADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 520 ~~~~g~~~~A~~~~~~m~~ 538 (586)
..+.|+++.|.+.++-|.+
T Consensus 131 ~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 131 LLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 4566777777777777754
No 413
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=55.56 E-value=1.7e+02 Score=26.96 Aligned_cols=93 Identities=11% Similarity=0.066 Sum_probs=47.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHHh---hCCCCChHHHHHH-HHHHhhcCCHHHHHHHHH-------hCCCCCCHHHHHH
Q 007871 413 GVLIACSHSGLATEGYRIFQSMKRH---CGIEPKLEHYSCL-VDLLSRAGELEQALNIVE-------SMPMKPNLALWGT 481 (586)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~-------~~~~~p~~~~~~~ 481 (586)
-++..+.+.|.+.+|+.+...+..+ +..+|+..+...+ -++|....+..++..-+. .+-.+|....-..
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 4566677788888887766554331 3444543322211 234444444433333332 2222333333333
Q ss_pred HHHH--HHhcCChHHHHHHHHHHHhc
Q 007871 482 LLLA--CRNHQNVTLAEVVVEGLVEL 505 (586)
Q Consensus 482 l~~~--~~~~~~~~~a~~~~~~~~~~ 505 (586)
++.+ .+...++..|-.+|-++.+-
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHhc
Confidence 4444 45667888888888777763
No 414
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=54.52 E-value=97 Score=23.82 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMET 401 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~ 401 (586)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466777778888888888888887766
No 415
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=54.00 E-value=2e+02 Score=27.28 Aligned_cols=110 Identities=13% Similarity=-0.016 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhHHhhCC---CCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007871 424 ATEGYRIFQSMKRHCGI---EPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVE 500 (586)
Q Consensus 424 ~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 500 (586)
.+.|.+.|+........ ..++.....+.....+.|+.+.-..+++.....++...-..++.+.....+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56778888887772112 346667777777778888877766666666656678888888888888889888888999
Q ss_pred HHHhcC-CCCcchHHHHHHHHHhcCCc--hHHHHHHH
Q 007871 501 GLVELK-ADDCGLYVLLSNIYADAGMW--EHALRIRK 534 (586)
Q Consensus 501 ~~~~~~-p~~~~~~~~l~~~~~~~g~~--~~A~~~~~ 534 (586)
.+..-+ -.+.... .++..+...+.. +.+.+++.
T Consensus 226 ~~l~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 226 LLLSNDKVRSQDIR-YVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHCTSTS-TTTHH-HHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHcCCcccccHHHH-HHHHHHhcCChhhHHHHHHHHH
Confidence 888843 2233333 333344434444 56665543
No 416
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=53.74 E-value=1.8e+02 Score=26.59 Aligned_cols=118 Identities=13% Similarity=0.124 Sum_probs=81.7
Q ss_pred HHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 460 LEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVT-LAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 460 ~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
+.+=++.++++ . .+.+-..|..--......|+.. .-+++.+.|+..+..|-.+|..--+++..-+.|++-+.+-.+|
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~L 173 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADEL 173 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44445555555 1 2224455544333344556666 7788889999988889999999999999999999999999999
Q ss_pred HhCCCccCCCeeEEEECCeEeEEecCCCCCCCh-hHHHHHHHHHHHHHh
Q 007871 537 RKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQS-EELELVIQSFVKTTI 584 (586)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 584 (586)
.+..+.++.++-. ..|+......-.+ .++...|+=..++++
T Consensus 174 le~Di~NNSAWN~-------Ryfvi~~~~~~~~~~~le~El~yt~~~I~ 215 (318)
T KOG0530|consen 174 LEEDIRNNSAWNQ-------RYFVITNTKGVISKAELERELNYTKDKIL 215 (318)
T ss_pred HHHhhhccchhhe-------eeEEEEeccCCccHHHHHHHHHHHHHHHH
Confidence 9999988776532 2455444334444 777777777766654
No 417
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=53.36 E-value=60 Score=33.05 Aligned_cols=133 Identities=14% Similarity=0.023 Sum_probs=86.4
Q ss_pred CCCHHHHHHHHHHhhcc--CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh-hcCCHHHHHHHHHhC-CCCC--CHHH
Q 007871 405 PKDDLIFLGVLIACSHS--GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS-RAGELEQALNIVESM-PMKP--NLAL 478 (586)
Q Consensus 405 ~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~-~~~p--~~~~ 478 (586)
-|+..+...++.-.... ...+-+-.++-.|.. ...|--.+.| +...|. ..|+...|...+... ..+| ....
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 35555555444433221 223334444444433 2333222222 233344 468999999988776 3334 2233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
...+.....+.|-...|-.++.+.+.+.-..|-++..++++|....+.+.|++.++...+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 45566666777788889999999999988888899999999999999999999999887654
No 418
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=53.32 E-value=2.5e+02 Score=28.28 Aligned_cols=241 Identities=11% Similarity=0.013 Sum_probs=134.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------ChhHHHHHHHHHHHcC-CC-CchhHHHHHHHHHHhcCCH-H
Q 007871 289 KEALYLFREMLCQGVRPDVISVMGAISACAQVG------ALDLGKWIHVFMKRSR-IT-MDMIVQTALIDMYMKCGSL-D 359 (586)
Q Consensus 289 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~-~ 359 (586)
+....+|++..+. .|+...+...|..|...- .......+++...+.+ .. .....|..+.-.++....- +
T Consensus 299 s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~ 376 (568)
T KOG2396|consen 299 SRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE 376 (568)
T ss_pred HHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH
Confidence 3444677776653 456666666666664332 3334445555544433 22 2344566666555555443 3
Q ss_pred HHHHHHhccCCCCHhHHHHHHHHHHhc-CChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHhhccCC-HHH--HHHHHHHh
Q 007871 360 EARRIFYSMTKKNVISYNVMIAGLGMN-GFGEEA-LKCFAQMETEGIPKDDLIFLGVLIACSHSGL-ATE--GYRIFQSM 434 (586)
Q Consensus 360 ~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A-~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~--A~~~~~~~ 434 (586)
-|..+..+....+...|..-+....+. .++.-. ..++......-..+-...+.... .|+ .+. -..++...
T Consensus 377 ~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 377 VAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred HHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 344444455556666666555554422 122211 11222333221222223333332 122 111 11233333
Q ss_pred HHhhCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHhcCCCC
Q 007871 435 KRHCGIEPKL-EHYSCLVDLLSRAGELEQALNIVESMP-M-KPNLALWGTLLLAC--RNHQNVTLAEVVVEGLVELKADD 509 (586)
Q Consensus 435 ~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~p~~ 509 (586)
.+ ...|+. ..-+.+++.+...|-..+|..++.... . +|+...+..++..- ...-+...+..+|+.+...-..+
T Consensus 452 ~s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d 529 (568)
T KOG2396|consen 452 LS--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGAD 529 (568)
T ss_pred HH--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCC
Confidence 33 233443 444567888889999999999998873 2 34677777776652 23345788889999988866688
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 510 CGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 510 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
+..|......-...|+.+.+-.++.+..+
T Consensus 530 ~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 530 SDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 88888887777788988888887777543
No 419
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=53.25 E-value=3.4e+02 Score=29.65 Aligned_cols=216 Identities=14% Similarity=0.028 Sum_probs=116.7
Q ss_pred hccCChhHHHHHHHHHHHcCCCCchh-------HHHHH-HHHHHhcCCHHHHHHHHhccCC--------CCHhHHHHHHH
Q 007871 318 AQVGALDLGKWIHVFMKRSRITMDMI-------VQTAL-IDMYMKCGSLDEARRIFYSMTK--------KNVISYNVMIA 381 (586)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~ 381 (586)
....++++|..+..++...-..|+.. .++.+ .......|+.+.|.++-+.... +.+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45667888888777765442222211 22222 2233456888888877665442 45667788888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHH--HHhhccCC--HHHHHHHHHHhHHhhCCCC-----ChHHHHH
Q 007871 382 GLGMNGFGEEALKCFAQMETEGIPKDDL---IFLGVL--IACSHSGL--ATEGYRIFQSMKRHCGIEP-----KLEHYSC 449 (586)
Q Consensus 382 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~l~--~~~~~~g~--~~~A~~~~~~~~~~~~~~~-----~~~~~~~ 449 (586)
+..-.|++++|..+..+..+.--.-+.. .+..+. ..+..+|. +.+....+........... -..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999988887665531122222 222222 23556673 3333444444433211111 1234444
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHhcCCCC--cchHHH---
Q 007871 450 LVDLLSRAGELEQALNIVESM-------PMKPNLALW--GTLLLACRNHQNVTLAEVVVEGLVELKADD--CGLYVL--- 515 (586)
Q Consensus 450 l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~--- 515 (586)
+..++.+ ++.+..-.... ...|-.... ..++......|+.++|...+.++......+ ...|..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4555544 33333322211 112222222 256677888999999999999988864222 222221
Q ss_pred H--HHHHHhcCCchHHHHHHHHH
Q 007871 516 L--SNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 516 l--~~~~~~~g~~~~A~~~~~~m 536 (586)
+ ......+|+.++|...+.+-
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHhc
Confidence 1 22245678888888777663
No 420
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=52.42 E-value=2.3e+02 Score=27.51 Aligned_cols=175 Identities=10% Similarity=0.078 Sum_probs=101.9
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHH--HHHHHHCCCCCCHHHHHHHHH
Q 007871 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC--FAQMETEGIPKDDLIFLGVLI 416 (586)
Q Consensus 339 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~--~~~m~~~g~~p~~~~~~~l~~ 416 (586)
..+..++..++..|...++|+.--+.+. ....+.|+...|+.. .+-|.-..-.||..+-..++.
T Consensus 49 ~s~~kv~~~i~~lc~~~~~w~~Lne~i~--------------~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~ 114 (439)
T KOG1498|consen 49 ASNTKVLEEIMKLCFSAKDWDLLNEQIR--------------LLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIE 114 (439)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHH--------------HHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHH
Confidence 3344555666667777777665444332 222345666665542 222222223455555444444
Q ss_pred HhhccCCHHHHHHHHHHhHHhhCCCC---ChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC--------CHHHHHHHHHH
Q 007871 417 ACSHSGLATEGYRIFQSMKRHCGIEP---KLEHYSCLVDLLSRAGELEQALNIVESMPMKP--------NLALWGTLLLA 485 (586)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--------~~~~~~~l~~~ 485 (586)
.+ +...+ ..+-. -...-..|.+.+..+|+.++|..++.+.+... -......-++.
T Consensus 115 tL-------------r~Vte-gkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrK 180 (439)
T KOG1498|consen 115 TL-------------RTVTE-GKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRL 180 (439)
T ss_pred HH-------------HHhhc-CceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHH
Confidence 32 11111 01111 12233457788889999999999988874221 11222334566
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCc-------chHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007871 486 CRNHQNVTLAEVVVEGLVELKADDC-------GLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 541 (586)
|...+||-.|.-+-+++....-+.+ ..|..++......+.|=.+.+.|+..-+.|-
T Consensus 181 OG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~ 243 (439)
T KOG1498|consen 181 CLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGN 243 (439)
T ss_pred HHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccc
Confidence 8889999999888888776532222 2477777777888889999999998876653
No 421
>PRK10941 hypothetical protein; Provisional
Probab=52.37 E-value=1.9e+02 Score=26.66 Aligned_cols=74 Identities=12% Similarity=0.072 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHH
Q 007871 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451 (586)
Q Consensus 376 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 451 (586)
.+.+-.+|.+.++++.|+.+.+.+.. +.|+. .-+.--.-.|.+.|.+..|..=++...+++.-.|+.......+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 34444556666666666666666665 34432 2333334445566666666665555555433344444433333
No 422
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=51.53 E-value=30 Score=34.10 Aligned_cols=103 Identities=12% Similarity=0.035 Sum_probs=72.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC
Q 007871 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFL-GVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458 (586)
Q Consensus 380 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (586)
+..+...+.++.|..++.+.++ +.||-..|. .-..++.+.+++..|+.=...+++. -+-....|..=+.++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHH
Confidence 4556778899999999999999 788765443 3347888999999998888777772 2223344444455566667
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 007871 459 ELEQALNIVESM-PMKPNLALWGTLLLAC 486 (586)
Q Consensus 459 ~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 486 (586)
.+.+|...|+.. ...|+..-....+.-|
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 788888888777 4667766666665554
No 423
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.77 E-value=2.5e+02 Score=27.38 Aligned_cols=158 Identities=9% Similarity=-0.033 Sum_probs=79.0
Q ss_pred hcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh---hccCCHHHHHHH
Q 007871 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC---SHSGLATEGYRI 430 (586)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~---~~~g~~~~A~~~ 430 (586)
..++.+.-..+++. -.-.+.++-.+...+..+|+.+.|.+++++..-.- ..++......+ ...|.
T Consensus 22 ~~~Dp~~l~~ll~~-~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~~~~g~------- 89 (360)
T PF04910_consen 22 QSHDPNALINLLQK-NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSNLTSGN------- 89 (360)
T ss_pred HccCHHHHHHHHHH-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccCc-------
Confidence 34455555555522 12255566666777778888888777777654210 00000000000 00000
Q ss_pred HHHhHHhhCCCCChHHHHHH---HHHHhhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHH-HHhcCChHHHHHHHHHHH
Q 007871 431 FQSMKRHCGIEPKLEHYSCL---VDLLSRAGELEQALNIVESM-PMKP--NLALWGTLLLA-CRNHQNVTLAEVVVEGLV 503 (586)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~ 503 (586)
..-.+...-|...|.++ +..+.+.|-+..|.++.+-+ ...| |+......|.. ..+.++++--+.+.+...
T Consensus 90 ---~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 90 ---CRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred ---cccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 00001222344444443 45667778888888777655 3333 34444444444 346677777777777655
Q ss_pred hcCC-----CCcchHHHHHHHHHhcCCc
Q 007871 504 ELKA-----DDCGLYVLLSNIYADAGMW 526 (586)
Q Consensus 504 ~~~p-----~~~~~~~~l~~~~~~~g~~ 526 (586)
.... .-|..-...+-++...++-
T Consensus 167 ~~~~~~~~~~lPn~a~S~aLA~~~l~~~ 194 (360)
T PF04910_consen 167 AKCYRNWLSLLPNFAFSIALAYFRLEKE 194 (360)
T ss_pred hhhhhhhhhhCccHHHHHHHHHHHhcCc
Confidence 4211 1234555555566666666
No 424
>PHA02875 ankyrin repeat protein; Provisional
Probab=50.31 E-value=2.7e+02 Score=27.65 Aligned_cols=134 Identities=10% Similarity=0.021 Sum_probs=64.6
Q ss_pred HHHHHHHHcCCCCChhh--HhHHHHHhccCCCCChHHHHHHHhccCCCCcc--hHHHHHHHHhcCCCchhHHHHHHHhHh
Q 007871 30 QILAQLTTNDLITEPFT--LSQLLMSLTSPNTLNMDQAERLFNQIYQPNTY--MHNTMIRGYTQSSNPQKALSFYVNMKR 105 (586)
Q Consensus 30 ~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~A~~~~~~m~~ 105 (586)
++.+.+++.|..|+... -...+. ..+.. |+.+-+.-+++....|+.. .....+...+..|+.+.+..+++
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~-~A~~~-~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~---- 89 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIK-LAMKF-RDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD---- 89 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHH-HHHHc-CCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----
Confidence 35566666776665533 223344 44556 7777777666655333322 11223444456677665544443
Q ss_pred CCCCCCcc---cHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCChhHHHHHhccC
Q 007871 106 KGLLVDNY---TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV--VNGLIGMYSKCGHMGCARSVFEGS 173 (586)
Q Consensus 106 ~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~ 173 (586)
.|...+.. .-.+.+...+..|+. ++++.+.+.|..|+... -...+...+..|+.+-+..+++..
T Consensus 90 ~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g 158 (413)
T PHA02875 90 LGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK 158 (413)
T ss_pred cCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 33211110 011223333444544 34555556666554332 123344555667766666666543
No 425
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=50.18 E-value=1.6e+02 Score=25.14 Aligned_cols=47 Identities=19% Similarity=0.206 Sum_probs=29.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 007871 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530 (586)
Q Consensus 483 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 530 (586)
+..|.+.|.+++|.+++++..+ +|++......|..+-.+...+...+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~l 164 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVL 164 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHH
Confidence 3457788888888888888777 6666666555554444444444333
No 426
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=48.86 E-value=45 Score=19.84 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=23.2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 511 GLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 511 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
.+|..|+.+-...++|++|.+=|++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678889999999999999888887654
No 427
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=48.69 E-value=38 Score=31.35 Aligned_cols=80 Identities=10% Similarity=0.105 Sum_probs=54.9
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH-HHHHhcCChHHHHHHHHHHHhcCCCCcchHHH
Q 007871 439 GIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLL-LACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515 (586)
Q Consensus 439 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 515 (586)
....|+..|...+.-..+.|.+.+...++.+. ...| ++..|-..- .-+...++++.+..++.+.+..+|++|.+|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 34456666666665555666666666666655 2334 566664422 22667889999999999999999999998876
Q ss_pred HHH
Q 007871 516 LSN 518 (586)
Q Consensus 516 l~~ 518 (586)
..+
T Consensus 182 yfr 184 (435)
T COG5191 182 YFR 184 (435)
T ss_pred HHH
Confidence 543
No 428
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.58 E-value=79 Score=27.38 Aligned_cols=53 Identities=13% Similarity=0.006 Sum_probs=38.6
Q ss_pred hhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
....++.+......+.+.+-....|++..|..++.++...|+.++|.....++
T Consensus 118 ~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 118 ARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33556666555555555554456788888888888888888888888888777
No 429
>PRK13342 recombination factor protein RarA; Reviewed
Probab=48.54 E-value=2.9e+02 Score=27.54 Aligned_cols=96 Identities=14% Similarity=-0.018 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCCHhHHHHHH
Q 007871 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM---TKKNVISYNVMI 380 (586)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~ 380 (586)
..+......++..+ .|+...+..+++.+...+...+. +...+++... ...+...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~----------------~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSITL----------------ELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCH----------------HHHHHHHhhhhhccCCCccHHHHHH
Confidence 44555555454433 67777777777765443211121 2222222211 112222333444
Q ss_pred HHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007871 381 AGLGM---NGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417 (586)
Q Consensus 381 ~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 417 (586)
.++.+ .++++.|+.++.+|.+.|..|....-..+..+
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44443 47889999999999998877765443333333
No 430
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=48.44 E-value=29 Score=30.55 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=26.5
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007871 456 RAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509 (586)
Q Consensus 456 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 509 (586)
..|+.+.|.+++.+. ...| ....|-.+.....+.|+++.|.+.|++..+++|++
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344455555555444 1112 33444444444555555555555555555555443
No 431
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.51 E-value=57 Score=20.58 Aligned_cols=31 Identities=10% Similarity=0.093 Sum_probs=17.4
Q ss_pred ccCCchHHHHHHHHHHHhCCCCchhHHHHHH
Q 007871 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLI 154 (586)
Q Consensus 124 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 154 (586)
+.|-+.++..+++.|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555666666666666555555555444
No 432
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=47.23 E-value=1.4e+02 Score=23.45 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=13.1
Q ss_pred HHHHHhcCCchHHHHHHHHH
Q 007871 517 SNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 517 ~~~~~~~g~~~~A~~~~~~m 536 (586)
+.++...|+.++|...|+..
T Consensus 107 a~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 107 AVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHH
Confidence 44577778888887777653
No 433
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.19 E-value=1.3e+02 Score=32.45 Aligned_cols=174 Identities=16% Similarity=0.085 Sum_probs=100.9
Q ss_pred CChHHHHHHHhccCCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHH
Q 007871 60 LNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVV 139 (586)
Q Consensus 60 ~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 139 (586)
.++++...+.+...-+. .++|..+.+.|.++-|+.+.+.= .+- +..+...|+++.|.+....+
T Consensus 607 k~ydeVl~lI~ns~LvG----qaiIaYLqKkgypeiAL~FVkD~---------~tR---F~LaLe~gnle~ale~akkl- 669 (1202)
T KOG0292|consen 607 KKYDEVLHLIKNSNLVG----QAIIAYLQKKGYPEIALHFVKDE---------RTR---FELALECGNLEVALEAAKKL- 669 (1202)
T ss_pred hhhHHHHHHHHhcCccc----HHHHHHHHhcCCcceeeeeecCc---------chh---eeeehhcCCHHHHHHHHHhc-
Confidence 46777777766443222 35566667778777777665422 111 12233457777776654332
Q ss_pred HhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHH
Q 007871 140 KMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY 219 (586)
Q Consensus 140 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~ 219 (586)
.|..+|..|.....+.|+.+-|+..|++... |+.|--.|.-.|+.++-.++.+.....+..+-......|
T Consensus 670 -----dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn-----fekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qnalY 739 (1202)
T KOG0292|consen 670 -----DDKDVWERLGEEALRQGNHQIAEMCYQRTKN-----FEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQNALY 739 (1202)
T ss_pred -----CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh-----hhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3566888888888888888888888876543 444445556667776666655554433332222222223
Q ss_pred hhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007871 220 RKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP 268 (586)
Q Consensus 220 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 268 (586)
.|++++-..+++..-..+..-.. ....|.-++|.++.++..
T Consensus 740 ---l~dv~ervkIl~n~g~~~laylt-----a~~~G~~~~ae~l~ee~~ 780 (1202)
T KOG0292|consen 740 ---LGDVKERVKILENGGQLPLAYLT-----AAAHGLEDQAEKLGEELE 780 (1202)
T ss_pred ---hccHHHHHHHHHhcCcccHHHHH-----HhhcCcHHHHHHHHHhhc
Confidence 57777777777766543322222 123566677777777665
No 434
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=47.13 E-value=1.3e+02 Score=25.71 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=20.5
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007871 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485 (586)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 485 (586)
+-.|.+.|.+++|.+++++.-..|+......-+..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~ 152 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLM 152 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 34566777777777777776434544444433333
No 435
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=47.00 E-value=39 Score=31.33 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 007871 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312 (586)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ 312 (586)
.-|+..|..-.+.||+++|+.++++..+.|+.--..+|..
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 3466888888888999999999999988887655555543
No 436
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=46.93 E-value=1.3e+02 Score=27.35 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=11.4
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHH
Q 007871 497 VVVEGLVELKADDCGLYVLLSNIYA 521 (586)
Q Consensus 497 ~~~~~~~~~~p~~~~~~~~l~~~~~ 521 (586)
.+..+.+...|+|..+|+-|...+.
T Consensus 208 ~yt~~~I~~vP~NeSaWnYL~G~l~ 232 (318)
T KOG0530|consen 208 NYTKDKILLVPNNESAWNYLKGLLE 232 (318)
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHH
Confidence 3334444444555555555444433
No 437
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.68 E-value=4.9e+02 Score=29.60 Aligned_cols=120 Identities=12% Similarity=0.014 Sum_probs=54.9
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHH
Q 007871 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK----LEHYSCLVDLLSRAGELEQALNIVESMPMK-PNLALWGTLLLA 485 (586)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~ 485 (586)
|..+++.+-..+..+.+.++-..+++ ..+++ .-+++.+.+-....|.+-+|.+.+-+.+.. ....+...++..
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe--~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlviv 1063 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIE--NLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 44455555555666666666555555 23332 223444555555566666665554443211 112334444444
Q ss_pred HHhcCCh------------HHHHH-HHHHHHhcCCCCcchHHHHHHH-HHhcCCchHHHHH
Q 007871 486 CRNHQNV------------TLAEV-VVEGLVELKADDCGLYVLLSNI-YADAGMWEHALRI 532 (586)
Q Consensus 486 ~~~~~~~------------~~a~~-~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~ 532 (586)
+...|.+ ++.+. +++..-+..|-...-|+.+..+ +...++|.+|-.+
T Consensus 1064 Lfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1064 LFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 4444433 22233 3333333334433334444333 4556666665543
No 438
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.66 E-value=52 Score=23.33 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=27.4
Q ss_pred hhHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHh
Q 007871 13 NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLS 48 (586)
Q Consensus 13 ~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 48 (586)
...+..|..|...++|.++++.+.+.| ..++.-.+
T Consensus 35 PtV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~ 69 (98)
T COG4003 35 PTVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAK 69 (98)
T ss_pred chHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 457788999999999999999999988 44444443
No 439
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.55 E-value=26 Score=27.94 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=24.8
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007871 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISA 316 (586)
Q Consensus 282 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 316 (586)
..+.|.-..|..+|++|++.|-+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 33456677899999999999999985 5555544
No 440
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=46.34 E-value=2.5e+02 Score=26.26 Aligned_cols=42 Identities=5% Similarity=-0.024 Sum_probs=18.7
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC
Q 007871 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174 (586)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 174 (586)
++++.+.+.++.|.-..+.=+.-.+...=.+.....+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 344444444444444444433333444444444444444443
No 441
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.26 E-value=2.5e+02 Score=29.35 Aligned_cols=84 Identities=10% Similarity=0.033 Sum_probs=59.8
Q ss_pred hhcCCHHHHHHHHHh-CCCCC-C------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 007871 455 SRAGELEQALNIVES-MPMKP-N------LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMW 526 (586)
Q Consensus 455 ~~~g~~~~A~~~~~~-~~~~p-~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 526 (586)
.+..++..+.+.|.. +..-| | ......+--+|....+.|+|.++++++.+.+|.++-.......+....|.-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 355677777776653 22111 1 233445555677888889999999999888888888888888888888888
Q ss_pred hHHHHHHHHHHh
Q 007871 527 EHALRIRKMMRK 538 (586)
Q Consensus 527 ~~A~~~~~~m~~ 538 (586)
++|+........
T Consensus 445 e~AL~~~~~~~s 456 (872)
T KOG4814|consen 445 EEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHHh
Confidence 888888776653
No 442
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=46.20 E-value=77 Score=28.83 Aligned_cols=19 Identities=5% Similarity=0.064 Sum_probs=9.0
Q ss_pred HHhhccCCHHHHHHHHHHh
Q 007871 416 IACSHSGLATEGYRIFQSM 434 (586)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~~ 434 (586)
.-|...|++++|.++|+.+
T Consensus 186 ~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 3344444455444444444
No 443
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.81 E-value=76 Score=20.02 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=21.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007871 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416 (586)
Q Consensus 384 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 416 (586)
.+.|-.+++..++++|.+.|+..++..+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777777777666665553
No 444
>PHA02875 ankyrin repeat protein; Provisional
Probab=45.77 E-value=3.1e+02 Score=27.15 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHCCC
Q 007871 390 EEALKCFAQMETEGI 404 (586)
Q Consensus 390 ~~A~~~~~~m~~~g~ 404 (586)
+++.+-++.|....+
T Consensus 297 ~~C~~ei~~mk~~~i 311 (413)
T PHA02875 297 EKCIIELRRIKSEKI 311 (413)
T ss_pred HHHHHHHHHHHhhcc
Confidence 345556666666433
No 445
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.55 E-value=1.2e+02 Score=23.26 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHH
Q 007871 274 SWSIMIDGYAQHGNPKEALYLFREMLC 300 (586)
Q Consensus 274 ~~~~l~~~~~~~~~~~~A~~~~~~m~~ 300 (586)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777788888888888888887766
No 446
>PHA03100 ankyrin repeat protein; Provisional
Probab=45.02 E-value=3.5e+02 Score=27.48 Aligned_cols=131 Identities=9% Similarity=0.034 Sum_probs=58.6
Q ss_pred HHHHHHhCCCCchhH--HHHHHHHHHhcC--ChhHHHHHhccCCCC---ChhhHHHHHHHHHhCCChhHHHHHHhhCCCC
Q 007871 135 HGEVVKMGFLCDVFV--VNGLIGMYSKCG--HMGCARSVFEGSEIK---DLVSWNLVLRGFVECGEMGKAREVFDEMPQK 207 (586)
Q Consensus 135 ~~~~~~~~~~~~~~~--~~~li~~~~~~g--~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 207 (586)
++.+.+.|..++... -...+..++..| +.+-+.-+++..... +..-+ +.+...+..|+.+-+..+++.-..+
T Consensus 124 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~-tpL~~A~~~~~~~iv~~Ll~~ga~~ 202 (480)
T PHA03100 124 VEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGY-TPLHIAVEKGNIDVIKFLLDNGADI 202 (480)
T ss_pred HHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCC-CHHHHHHHhCCHHHHHHHHHcCCCc
Confidence 334444554443221 123444555556 555555555543322 21111 2233445556665555555543322
Q ss_pred Chh--------HHHHHHHHHhhccCC--HHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007871 208 DAI--------SWSIMIDGYRKKKGD--ISSARILFEHMPIK---DLISWNSMIDGYAKIGDLVAAQQLFNEMP 268 (586)
Q Consensus 208 ~~~--------~~~~ll~~~~~~~g~--~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 268 (586)
+.. .+.+.+... +..|+ .+-...+++..... |..-.+. +...+..|+.+-+..+++.-.
T Consensus 203 ~~~~~~~~~~~~~~t~l~~a-~~~~~~~~~iv~~Ll~~g~din~~d~~g~Tp-L~~A~~~~~~~iv~~Ll~~ga 274 (480)
T PHA03100 203 NAGDIETLLFTIFETPLHIA-ACYNEITLEVVNYLLSYGVPINIKDVYGFTP-LHYAVYNNNPEFVKYLLDLGA 274 (480)
T ss_pred cCCCCCCCcHHHHHhHHHHH-HHhCcCcHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHHcCC
Confidence 211 112333333 44566 66666666664432 2222222 333455666666655555443
No 447
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.00 E-value=34 Score=27.25 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=22.0
Q ss_pred cCCCchhHHHHHHHhHhCCCCCCcccHHHHHHH
Q 007871 89 QSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121 (586)
Q Consensus 89 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 121 (586)
..|.-..|-.+|+.|++.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345667788888888888877765 5666654
No 448
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=44.31 E-value=1.5e+02 Score=29.13 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=11.4
Q ss_pred HHHHHhhcCCHHHHHHHHHhC
Q 007871 450 LVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 450 l~~~~~~~g~~~~A~~~~~~~ 470 (586)
|++..+-.|++..|+++++.+
T Consensus 128 LlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred HHHHHHhccCHHHHHHHhhcc
Confidence 344455555555555555554
No 449
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=43.90 E-value=78 Score=22.99 Aligned_cols=63 Identities=11% Similarity=0.158 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCCchhH
Q 007871 28 ILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKA 96 (586)
Q Consensus 28 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 96 (586)
...+++.+++.|+-.+ .-... +.+.. -+.+.|.++++.++.....+|.....++-..|...-|
T Consensus 18 ~~~v~~~L~~~~Vlt~-~~~e~----I~~~~-tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVFTP-DMIEE----IQAAG-SRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCCCH-HHHHH----HHcCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 4568888888884322 21222 22333 5788899999988888889999999988877755443
No 450
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.76 E-value=1.2e+02 Score=24.95 Aligned_cols=63 Identities=17% Similarity=0.125 Sum_probs=42.8
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 007871 98 SFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCG 161 (586)
Q Consensus 98 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 161 (586)
++.+.+.+.|++++..- ..++..+...++.-.|.++++++.+.+...+..|.-.-+..+...|
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34555667777766543 4567777777777889999999998876666555444456666655
No 451
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=43.72 E-value=1.6e+02 Score=23.32 Aligned_cols=42 Identities=21% Similarity=0.364 Sum_probs=22.6
Q ss_pred HHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHH
Q 007871 426 EGYRIFQSMKRHCGIEP-KLEHYSCLVDLLSRAGELEQALNIVE 468 (586)
Q Consensus 426 ~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 468 (586)
.+..+|..|..+ ++-. -...|...+..+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555566666553 4433 23445555566666666666666654
No 452
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.41 E-value=48 Score=22.32 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=10.1
Q ss_pred HHHHHhhccCCHHHHHHHHHHhH
Q 007871 413 GVLIACSHSGLATEGYRIFQSMK 435 (586)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~~~ 435 (586)
.++.++...|++++|.++++.+.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444444444444444443
No 453
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=43.38 E-value=2.7e+02 Score=25.63 Aligned_cols=159 Identities=16% Similarity=0.090 Sum_probs=74.5
Q ss_pred hcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHhhccCCHH-HHH
Q 007871 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK----CFAQMETEGIPKDDLIFLGVLIACSHSGLAT-EGY 428 (586)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~-~A~ 428 (586)
+.+++++|.+++..- ...+.+.|+...|.+ +++-..+.+.+++......++..+...+.-+ +-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 345666776665432 233445555544433 3333334556666655555554443322111 111
Q ss_pred HHHHHhHH--hhCCC--CChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 429 RIFQSMKR--HCGIE--PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 429 ~~~~~~~~--~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
++.+.+.+ +.+-. -++.....++..|.+.|++.+|...|=... .|+...+..++......|
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~-------------- 135 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKG-------------- 135 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHT--------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhc--------------
Confidence 22222211 01222 267788889999999999998887775542 122222212222222222
Q ss_pred cCCCCcchHHH-HHHHHHhcCCchHHHHHHHHHHhC
Q 007871 505 LKADDCGLYVL-LSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 505 ~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.|.....+.. .+--|.-.|+...|...++...+.
T Consensus 136 -~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 136 -YPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -SS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred -CCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2333333333 233477889999999988887665
No 454
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=43.32 E-value=5.3e+02 Score=29.09 Aligned_cols=48 Identities=10% Similarity=0.066 Sum_probs=28.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 007871 381 AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434 (586)
Q Consensus 381 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 434 (586)
-+-..+.|+.+=+-.++++.+ ++|+..-|. |+ ...+++++|++.+.++
T Consensus 880 VAq~SQkDPKEYLPfL~~L~~--l~~~~rry~--ID--~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 880 VAQQSQKDPKEYLPFLQELQK--LPPLYRRYK--ID--DHLKRYEKALRHLSAC 927 (928)
T ss_pred HHHHhccChHHHHHHHHHHHh--CChhheeee--Hh--hhhCCHHHHHHHHHhh
Confidence 334456677777777777776 444332111 11 3457888888876653
No 455
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.76 E-value=88 Score=23.41 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=20.5
Q ss_pred HHHHHHHHhcC-CCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 007871 496 EVVVEGLVELK-ADDCGLYVLLSNIYADAGMWEHALRIRKM 535 (586)
Q Consensus 496 ~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 535 (586)
++.++++...+ +..|.....|+-.|.+.|+-+.|.+-|+.
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 33444444433 44455555555556666666555555543
No 456
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=42.52 E-value=1.4e+02 Score=22.05 Aligned_cols=52 Identities=21% Similarity=0.004 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCCc
Q 007871 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD--DCGLYVLLSNIYADAGMW 526 (586)
Q Consensus 475 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~ 526 (586)
|......+...+...|+++.|+..+-.+++.++. +......++.++.-.|.-
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 4455556666677777777777777777766543 355566666666666653
No 457
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=41.86 E-value=1.6e+02 Score=22.60 Aligned_cols=77 Identities=13% Similarity=0.032 Sum_probs=45.9
Q ss_pred CCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC
Q 007871 126 MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205 (586)
Q Consensus 126 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 205 (586)
...++|..|.+.+...+- ....+...-+..+.+.|++++|...=.....||...|-++. -.+.|-.+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHH
Confidence 356788888888877653 23333344455677888888885555555566776665543 346677777777776665
No 458
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=41.83 E-value=3.4e+02 Score=31.08 Aligned_cols=121 Identities=16% Similarity=0.127 Sum_probs=83.5
Q ss_pred HhhccCCHHHHHH------HHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--------C-CCC-CHHHHH
Q 007871 417 ACSHSGLATEGYR------IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM--------P-MKP-NLALWG 480 (586)
Q Consensus 417 ~~~~~g~~~~A~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~p-~~~~~~ 480 (586)
.+...|.+.++.+ ++...... -.++....|..+...+.+.|+.++|+..-.+. + ..| +...|.
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~-~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGV-LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhh-cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 3445566666666 55543331 23445678889999999999999999987655 1 223 334455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc--------CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 481 TLLLACRNHQNVTLAEVVVEGLVEL--------KADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 481 ~l~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
.+...+...+....|...+.++..+ .|+...+...+..++...++++.|.++++.+.+
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5555566666888888888777763 355555667777777888999999999999977
No 459
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=40.96 E-value=43 Score=22.56 Aligned_cols=30 Identities=23% Similarity=0.200 Sum_probs=19.4
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007871 372 NVISYNVMIAGLGMNGFGEEALKCFAQMET 401 (586)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 401 (586)
|..-.-..+.+|...|++++|.++++++..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444567777788888888877777654
No 460
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.68 E-value=58 Score=30.21 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 413 (586)
-|+..|..-.+.||+++|+.++++.+..|..--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 356788888888999999999999888887655555543
No 461
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.61 E-value=3.2e+02 Score=25.78 Aligned_cols=93 Identities=14% Similarity=0.174 Sum_probs=47.1
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCC-----C----HHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCcchHHH--
Q 007871 449 CLVDLLSRAGELEQALNIVESMPMKP-----N----LALWGTLLLACRNHQNVTLAEVVVEGLVEL--KADDCGLYVL-- 515 (586)
Q Consensus 449 ~l~~~~~~~g~~~~A~~~~~~~~~~p-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~-- 515 (586)
.|...|.+.++|..|-+.+..++... | ..++-.+...|.+.++..+|+.+..+..=+ +..|+.....
T Consensus 108 ~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~k 187 (399)
T KOG1497|consen 108 HLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYK 187 (399)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHH
Confidence 35566666677777666666553211 1 123334455566666666666666655432 1233333222
Q ss_pred --HHHHHHhcCCchHHHHHHHHHHhCCC
Q 007871 516 --LSNIYADAGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 516 --l~~~~~~~g~~~~A~~~~~~m~~~~~ 541 (586)
.++++-..|++-+|..-|.++....+
T Consensus 188 vc~ARvlD~krkFlEAAqrYyels~~ki 215 (399)
T KOG1497|consen 188 VCYARVLDYKRKFLEAAQRYYELSQRKI 215 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23344445555565555555544444
No 462
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.03 E-value=3e+02 Score=25.29 Aligned_cols=122 Identities=16% Similarity=0.102 Sum_probs=53.9
Q ss_pred HCCCCCCHHHHHHHHHHHhccCChh-HHHHHHHHHHH---cC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCH
Q 007871 300 CQGVRPDVISVMGAISACAQVGALD-LGKWIHVFMKR---SR--ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNV 373 (586)
Q Consensus 300 ~~g~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 373 (586)
+.+.+++......++..+...+.-+ .-..+.+.+++ .+ ..-++.....+...|.+.|++.+|+..|-.-..++.
T Consensus 42 ~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~ 121 (260)
T PF04190_consen 42 KSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSA 121 (260)
T ss_dssp HTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHH
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhH
Confidence 3455555555555555444332211 12222222222 11 123566777888888888888888877754433333
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
..+..++......|...++-- -....+--|.-.++...|...++...+
T Consensus 122 ~~~~~ll~~~~~~~~~~e~dl---------------fi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 122 FAYVMLLEEWSTKGYPSEADL---------------FIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHHHHTSS--HHH---------------HHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchhH---------------HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 332222222222222222211 112222234556777777777766655
No 463
>PRK13342 recombination factor protein RarA; Reviewed
Probab=39.74 E-value=4e+02 Score=26.59 Aligned_cols=47 Identities=28% Similarity=0.376 Sum_probs=31.4
Q ss_pred HHHHHHHHHh---CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007871 275 WSIMIDGYAQ---HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321 (586)
Q Consensus 275 ~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 321 (586)
+..+++++.+ .++++.|+.++..|.+.|..|....-..+..++...|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 4445555544 4788899999999998887777665555555544443
No 464
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=39.36 E-value=4.4e+02 Score=27.06 Aligned_cols=24 Identities=33% Similarity=0.747 Sum_probs=17.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccC
Q 007871 346 TALIDMYMKCGSLDEARRIFYSMT 369 (586)
Q Consensus 346 ~~l~~~~~~~g~~~~a~~~~~~~~ 369 (586)
..++.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 346667778888888888887776
No 465
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.87 E-value=5.8e+02 Score=28.27 Aligned_cols=38 Identities=11% Similarity=0.099 Sum_probs=22.9
Q ss_pred HhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 007871 317 CAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354 (586)
Q Consensus 317 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 354 (586)
+......+.+..+++.+....-.++....+.++..|+.
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 34445556666677776655555566666666666653
No 466
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=37.85 E-value=2.7e+02 Score=24.09 Aligned_cols=54 Identities=19% Similarity=0.383 Sum_probs=41.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-----------CC----CcchHHHHHHHHHhcCCchHHHHHHH
Q 007871 481 TLLLACRNHQNVTLAEVVVEGLVELK-----------AD----DCGLYVLLSNIYADAGMWEHALRIRK 534 (586)
Q Consensus 481 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----------p~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 534 (586)
.++..|.+.-+|.++.++++.+.++. |. .-.+.+..+.++.+.|..+.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 45566777888889999888887742 22 23456778888999999999999886
No 467
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=37.25 E-value=53 Score=30.47 Aligned_cols=70 Identities=4% Similarity=-0.021 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHH-HHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL-LSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 473 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
..|+..|...+..-.+.|-+.+...++.++....|.|...|.. -..-|...++++.++.++.+..+.+-+
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3578888888877778889999999999999999999999877 444578889999999888776665544
No 468
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.14 E-value=1.7e+02 Score=21.62 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=13.2
Q ss_pred HHHhhccCCHHHHHHHHHHhHH
Q 007871 415 LIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
.......|++++|...+++..+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3344556666666666666655
No 469
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=37.13 E-value=3.8e+02 Score=25.59 Aligned_cols=106 Identities=11% Similarity=-0.001 Sum_probs=0.0
Q ss_pred HHHhHHhhCCCCChHHHHHHHHHHhhcCC------------HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHH
Q 007871 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGE------------LEQALNIVESM--PMKPNLALWGTLLLACRNHQNVTLAE 496 (586)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~ 496 (586)
+++..+ ..|-|..+|-.++..=-..-. .+.-+.+++++ ..+.+...+..++..+.+..+.++..
T Consensus 8 l~~~v~--~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 8 LNRRVR--ENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHH--hCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHh---cCCchHHHHHHHHHHh
Q 007871 497 VVVEGLVELKADDCGLYVLLSNIYAD---AGMWEHALRIRKMMRK 538 (586)
Q Consensus 497 ~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~ 538 (586)
+.+++++..+|.++..|...++.... ...+++...+|.+..+
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
No 470
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.84 E-value=3.2e+02 Score=24.72 Aligned_cols=74 Identities=12% Similarity=0.015 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 007871 446 HYSCLVDLLSRAGELEQALNIVESM-PMK-PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519 (586)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 519 (586)
.+..+..++...|++-++++.-.++ ... .+...|..-..+.+..=+.++|..-|.++++++|.-..+...=..+
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~ 307 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRL 307 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHH
Confidence 4555667778888888888877776 223 3666666666666666788899999999999988765555443333
No 471
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.79 E-value=4.2e+02 Score=26.03 Aligned_cols=63 Identities=11% Similarity=0.003 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChhHHHHHHHHHHHc
Q 007871 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD---VISVMGAISACAQVGALDLGKWIHVFMKRS 336 (586)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 336 (586)
..+.-+...|...|+++.|++.|.+.+.- +... ...|..++..-.-.|++..+..+-.+....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 45667788899999999999999886542 1222 233444455555566776666665555443
No 472
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.75 E-value=1.9e+02 Score=23.66 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=16.5
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC
Q 007871 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (586)
...++.-.|.++++.+.+. +...+..|...-++.+...|
T Consensus 31 ~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 31 LEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCC
Confidence 3333334455555555442 33333333333344444444
No 473
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=36.24 E-value=2.2e+02 Score=22.63 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcC--CCCcchHHHHHHHHHhcCCchHHHHHHH
Q 007871 495 AEVVVEGLVELK--ADDCGLYVLLSNIYADAGMWEHALRIRK 534 (586)
Q Consensus 495 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 534 (586)
...+|..+...+ ...+..|...+..+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556677666643 5566677788888888888888888875
No 474
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.73 E-value=1.7e+02 Score=26.54 Aligned_cols=48 Identities=13% Similarity=-0.113 Sum_probs=23.0
Q ss_pred HHhcCChHHHHHHHHHHHhcC------CCCcchHHHHHHHHHhcCCchHHHHHH
Q 007871 486 CRNHQNVTLAEVVVEGLVELK------ADDCGLYVLLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~ 533 (586)
|...|++++|.++|+.+...- .....+...+..++.+.|+.++...+-
T Consensus 188 y~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 188 YFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 445555555555555553321 112223444555566666666555543
No 475
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=34.99 E-value=74 Score=24.39 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=29.4
Q ss_pred hHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHH
Q 007871 14 PLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLM 52 (586)
Q Consensus 14 ~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 52 (586)
..+..|..|...++|.++.+.|.+.| ..++...+.|-.
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~ 103 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRS 103 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56788999999999999999999988 555555554443
No 476
>PRK09857 putative transposase; Provisional
Probab=34.86 E-value=2.7e+02 Score=26.12 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccC
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 544 (586)
+..++......++.++..++++.+.+..|........+++-+.+.|.-+++.+..++|...|+...
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 334444445567777777777777776676666777888888888888889999999999888644
No 477
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.72 E-value=6.6e+02 Score=27.66 Aligned_cols=131 Identities=14% Similarity=0.130 Sum_probs=90.2
Q ss_pred HHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHH
Q 007871 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430 (586)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 430 (586)
.....|+++.|++.-..+. +...|..|...-..+|+.+-|+..|++... |..|--.|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 3456789999888876654 566899999999999999999999987655 34444456677888877766
Q ss_pred HHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007871 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505 (586)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 505 (586)
...+.. ..|... ....-.-.|+.++-.+++...+.-|- .|. .-..+|.-+.|+++.++....
T Consensus 721 ~~iae~----r~D~~~---~~qnalYl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 721 MKIAEI----RNDATG---QFQNALYLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHh----hhhhHH---HHHHHHHhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhccc
Confidence 655544 223222 11222357889998999988864431 111 134678888999999888773
No 478
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=34.67 E-value=70 Score=24.78 Aligned_cols=49 Identities=14% Similarity=0.024 Sum_probs=37.7
Q ss_pred hhHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChH
Q 007871 13 NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMD 63 (586)
Q Consensus 13 ~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 63 (586)
..++.++.....+-.|.++++.+.+.+...+..|....|. .+... |-+.
T Consensus 4 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~-~L~~~-Gli~ 52 (116)
T cd07153 4 LAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLE-LLEEA-GLVR 52 (116)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHH-HHHhC-CCEE
Confidence 4456677777778889999999998887788888888888 67777 6443
No 479
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=34.14 E-value=1.7e+02 Score=29.04 Aligned_cols=44 Identities=14% Similarity=0.173 Sum_probs=29.4
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 467 VESMPMKPN--LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 467 ~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
|...+.+|. ..++...+..+.+.+++..|-.+.+++++++|...
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 344444442 34556677778899999999999999999987653
No 480
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=33.88 E-value=2.9e+02 Score=27.84 Aligned_cols=137 Identities=9% Similarity=-0.029 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChH---H--------HH
Q 007871 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE---H--------YS 448 (586)
Q Consensus 380 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~--------~~ 448 (586)
+.+|.+..+...+..-.+..... -.-++.....--.-+.-.|++.+|.+++... ++.-... | +|
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~-a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~s----ni~~~~g~~~T~q~~~cif~N 287 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNI-AQDSSMALLLKSQLEYAHGNHPKAMKLLLVS----NIHKEAGGTITPQLSSCIFNN 287 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhh-cCCCcHHHHHHHHHHHHhcchHHHHHHHHhc----ccccccCccccchhhhheeec
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC--------------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007871 449 CLVDLLSRAGELEQALNIVESM--------------------PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508 (586)
Q Consensus 449 ~l~~~~~~~g~~~~A~~~~~~~--------------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 508 (586)
.|+-+..+.|.+.-+..+|.+. ...............+...|+.-.|.+.|.++......
T Consensus 288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Q ss_pred CcchHHHHHHHHH
Q 007871 509 DCGLYVLLSNIYA 521 (586)
Q Consensus 509 ~~~~~~~l~~~~~ 521 (586)
+|..|..++.+|.
T Consensus 368 nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 368 NPRLWLRLAECCI 380 (696)
T ss_pred CcHHHHHHHHHHH
No 481
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=33.42 E-value=4.1e+02 Score=24.85 Aligned_cols=58 Identities=14% Similarity=0.085 Sum_probs=33.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 447 YSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
++.....|..+|.+.+|.++.++. ...| +...+..++..+...||--.+.+.++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 444455666666666666666655 2333 445555666666666666666555555543
No 482
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=33.29 E-value=57 Score=25.58 Aligned_cols=49 Identities=16% Similarity=0.073 Sum_probs=37.7
Q ss_pred chhHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCCh
Q 007871 12 KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNM 62 (586)
Q Consensus 12 ~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 62 (586)
+..++.++...+.+-+|.++++.+.+.+...+..|....|. .+... |-+
T Consensus 10 R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~-~L~e~-Gli 58 (120)
T PF01475_consen 10 RLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLD-LLEEA-GLI 58 (120)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHH-HHHHT-TSE
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHH-HHHHC-CeE
Confidence 45677788888889999999999999988888888888887 67666 543
No 483
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=33.13 E-value=1.3e+02 Score=22.15 Aligned_cols=59 Identities=14% Similarity=0.264 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCC
Q 007871 28 ILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSN 92 (586)
Q Consensus 28 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 92 (586)
...+++.+++.|+-.+.. +..+ .+.. -+.+.+.++++.++.....+|..+..++-..+.
T Consensus 22 ~~~v~~~L~~~gvlt~~~-~~~I----~~~~-t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 22 LDELLIHLLQKDILTDSM-AESI----MAKP-TSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHHcCCCCHHH-HHHH----HcCC-CcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 456888888888533332 2222 2233 568899999998888888999999998866554
No 484
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=32.74 E-value=4.3e+02 Score=24.89 Aligned_cols=78 Identities=9% Similarity=0.002 Sum_probs=48.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH----------hcCCHHHH
Q 007871 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM----------KCGSLDEA 361 (586)
Q Consensus 292 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~a 361 (586)
.++++.+...++.|.-..|..+.-.+.+.=.+..+..+|+.+...... |..|+..|+ -.|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 456777777788888888777777777777777888888777654322 444444433 23555555
Q ss_pred HHHHhccCCCCHh
Q 007871 362 RRIFYSMTKKNVI 374 (586)
Q Consensus 362 ~~~~~~~~~~~~~ 374 (586)
.++++.-...|+.
T Consensus 338 mkLLQ~yp~tdi~ 350 (370)
T KOG4567|consen 338 MKLLQNYPTTDIS 350 (370)
T ss_pred HHHHhcCCCCCHH
Confidence 5555554444433
No 485
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=32.48 E-value=4.5e+02 Score=25.10 Aligned_cols=118 Identities=12% Similarity=0.089 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh------ccCCHHHHHHHHHHhHHhhCCCCChH-HHHHHHHHHhhcCCHH
Q 007871 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACS------HSGLATEGYRIFQSMKRHCGIEPKLE-HYSCLVDLLSRAGELE 461 (586)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 461 (586)
.+++..++++....+. |.+......|.++- ..-+|.....+|+.+.. +.|++. +.|.- -+.....-.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRA-VAla~~~Gp~ 346 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRA-VALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHH-HHHHHhhhHH
Confidence 4677788888777654 88887777777653 23467777777777765 334332 23322 2333444456
Q ss_pred HHHHHHHhCCCCCCH---HHHHHH-HHHHHhcCChHHHHHHHHHHHhcCCCCcc
Q 007871 462 QALNIVESMPMKPNL---ALWGTL-LLACRNHQNVTLAEVVVEGLVELKADDCG 511 (586)
Q Consensus 462 ~A~~~~~~~~~~p~~---~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 511 (586)
.++.+++-....|.. ..|..+ ...+.+.|..++|...|++++.+.++...
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 666666666444322 222222 33377889999999999998888766543
No 486
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=32.37 E-value=2.2e+02 Score=27.19 Aligned_cols=62 Identities=16% Similarity=0.144 Sum_probs=37.9
Q ss_pred CHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc-chHHHHHHHH
Q 007871 459 ELEQALNIVESM-PMKPN----LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC-GLYVLLSNIY 520 (586)
Q Consensus 459 ~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 520 (586)
-.++...+++.+ ..-|+ ...|-.++......|.++.++.+|++++..+.... .....+++++
T Consensus 118 p~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 118 PKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 445677777754 22244 35566777777778888888888888887764432 2333344443
No 487
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.09 E-value=1.9e+02 Score=24.42 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=30.8
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCH
Q 007871 400 ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460 (586)
Q Consensus 400 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 460 (586)
...|++++..-. .++..+...++.-.|.++++.+.+. +...+..|...-++.+...|-.
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCE
Confidence 345555555322 2222333334455666777777663 5555555555555666666654
No 488
>PRK14700 recombination factor protein RarA; Provisional
Probab=31.89 E-value=4.4e+02 Score=24.77 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHH---hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChh-----HHHHHHHHHHHcCC
Q 007871 272 VFSWSIMIDGYA---QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD-----LGKWIHVFMKRSRI 338 (586)
Q Consensus 272 ~~~~~~l~~~~~---~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~-----~a~~~~~~~~~~~~ 338 (586)
...+..+++++. +..|++.|+-++..|++.|-.|....-..++.+....|.-+ .|...++.....|.
T Consensus 123 gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 123 GKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred cchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 334444566665 45789999999999999998888777777777776666432 33444444444554
No 489
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=31.83 E-value=3.8e+02 Score=24.10 Aligned_cols=127 Identities=17% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 007871 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSL 358 (586)
Q Consensus 279 ~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 358 (586)
+..|.+.-++..|....++.. .+..-...+--|.+..+..--..+.+-....+++-+..-...++ +...|+.
T Consensus 137 MEiyS~ttRFalaCN~s~KIi------EPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDM 208 (333)
T KOG0991|consen 137 MEIYSNTTRFALACNQSEKII------EPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDM 208 (333)
T ss_pred HHHHcccchhhhhhcchhhhh------hhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchH
Q ss_pred HHHHHHHhccC----------------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007871 359 DEARRIFYSMT----------------KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414 (586)
Q Consensus 359 ~~a~~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 414 (586)
.+|+..++.-. +|.+.....++..+... ++++|.+++.++.+.|+.|....-+.+
T Consensus 209 RQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~-~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 209 RQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLKR-NIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred HHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHhc-cHHHHHHHHHHHHHcCCCHHHHHHHHH
No 490
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=31.83 E-value=1.1e+02 Score=22.15 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=10.6
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHH
Q 007871 257 LVAAQQLFNEMPERNVFSWSIMIDGYA 283 (586)
Q Consensus 257 ~~~A~~~~~~~~~~~~~~~~~l~~~~~ 283 (586)
.+++.++++.+......+|.....++.
T Consensus 46 ~~q~~~LLd~L~~RG~~AF~~F~~aL~ 72 (84)
T cd08326 46 RDQARQLLIDLETRGKQAFPAFLSALR 72 (84)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 333344444443333333333333333
No 491
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.24 E-value=1.9e+02 Score=24.42 Aligned_cols=60 Identities=8% Similarity=0.063 Sum_probs=37.1
Q ss_pred hHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 007871 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHM 163 (586)
Q Consensus 103 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 163 (586)
+...|++++..-. .++..+...++.-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 4456666555433 45555555566777888888888877666665544456666666643
No 492
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=30.46 E-value=2e+02 Score=20.46 Aligned_cols=17 Identities=6% Similarity=0.079 Sum_probs=6.5
Q ss_pred CChhHHHHHHHHHHhCC
Q 007871 270 RNVFSWSIMIDGYAQHG 286 (586)
Q Consensus 270 ~~~~~~~~l~~~~~~~~ 286 (586)
+|..+-...+.++.+.|
T Consensus 43 ~~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 43 EDPMVRRAAARALGRIG 59 (88)
T ss_dssp SSHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 33333333333333333
No 493
>PRK09462 fur ferric uptake regulator; Provisional
Probab=30.40 E-value=2.5e+02 Score=22.96 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 007871 98 SFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCG 161 (586)
Q Consensus 98 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 161 (586)
.+-+.+.+.|++++..-...+=......+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 3 ~~~~~l~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 3 DNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred hHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 494
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=30.06 E-value=47 Score=22.49 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=25.4
Q ss_pred ccccccCchhHHHHHHHccCchHHHHHHHHHHHcCCCCCh
Q 007871 5 AAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEP 44 (586)
Q Consensus 5 ~~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~ 44 (586)
++.++.++..|...+.. ..+...++++.|.++|+.|.+
T Consensus 26 E~~np~lR~~l~~~~~~--~~~~~~~l~~~m~~kGwY~~~ 63 (64)
T PF07875_consen 26 ECANPELRQILQQILNE--CQQMQYELFNYMNQKGWYQPP 63 (64)
T ss_pred HHCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCcCCC
Confidence 34455555666666555 345668899999999987754
No 495
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=30.05 E-value=83 Score=32.93 Aligned_cols=26 Identities=4% Similarity=-0.074 Sum_probs=18.0
Q ss_pred cchHHHHHHHHhcCCCchhHHHHHHHh
Q 007871 77 TYMHNTMIRGYTQSSNPQKALSFYVNM 103 (586)
Q Consensus 77 ~~~~~~ll~~~~~~~~~~~A~~~~~~m 103 (586)
..-|+ .+..+.-.|.++.|.++++..
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 44565 677788889999999998544
No 496
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=29.34 E-value=5.6e+02 Score=25.20 Aligned_cols=55 Identities=5% Similarity=-0.151 Sum_probs=34.1
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCChhHHHHHHHHHHHc
Q 007871 281 GYAQHGNPKEALYLFREMLCQGVRPDVI--SVMGAISACA--QVGALDLGKWIHVFMKRS 336 (586)
Q Consensus 281 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 336 (586)
.+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++.+|...++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344677888888888888776 555444 3444444543 344566777777765544
No 497
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.99 E-value=6.4e+02 Score=25.74 Aligned_cols=123 Identities=8% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 007871 227 SSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306 (586)
Q Consensus 227 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~ 306 (586)
+.|...+-.....|.......+..+.....-.--.+...++..........-+.-....++++.|+.++.+|...|..|.
T Consensus 198 ~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~~~~~i~~li~si~~~d~~~Al~~l~~ll~~Gedp~ 277 (472)
T PRK14962 198 REALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYE 277 (472)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHH
Q ss_pred HHHHHHHHHHHhccCChh------HHHHHHHHHHHcCCCCchhHHHHHH
Q 007871 307 VISVMGAISACAQVGALD------LGKWIHVFMKRSRITMDMIVQTALI 349 (586)
Q Consensus 307 ~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (586)
...-..+..+....|.-+ .+...++...+.|.+........++
T Consensus 278 ~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e~~~~l~~~~ 326 (472)
T PRK14962 278 VLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAEEKRLVCKLG 326 (472)
T ss_pred HHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcchHHHHHHHH
No 498
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=28.56 E-value=5.7e+02 Score=25.07 Aligned_cols=53 Identities=6% Similarity=-0.231 Sum_probs=29.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHh--hccCCHHHHHHHHHH
Q 007871 381 AGLGMNGFGEEALKCFAQMETEGIPKDDLI----FLGVLIAC--SHSGLATEGYRIFQS 433 (586)
Q Consensus 381 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~----~~~l~~~~--~~~g~~~~A~~~~~~ 433 (586)
..+.+.+++..|.++|+++.....+|.... +..+..+| ...-++++|.+.++.
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 345667777777777777777644444433 22233333 234455666666653
No 499
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=28.43 E-value=1.5e+02 Score=21.32 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=4.7
Q ss_pred CChHHHHHHHh
Q 007871 60 LNMDQAERLFN 70 (586)
Q Consensus 60 ~~~~~A~~~~~ 70 (586)
|+++-...+++
T Consensus 8 ~~~~~~~~ll~ 18 (89)
T PF12796_consen 8 GNLEILKFLLE 18 (89)
T ss_dssp TTHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 44444444444
No 500
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=28.13 E-value=2.5e+02 Score=22.44 Aligned_cols=38 Identities=18% Similarity=0.085 Sum_probs=28.6
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007871 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522 (586)
Q Consensus 485 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 522 (586)
.+...-+.+.|+.+|+++++..|++..+...++..+-.
T Consensus 85 ~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 85 SWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 34555677999999999999999999988888877654
Done!