Query 007871
Match_columns 586
No_of_seqs 569 out of 3364
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 12:33:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.1E-41 3.9E-46 356.5 37.7 472 55-539 63-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8.6E-39 2.9E-43 334.6 30.5 473 41-521 81-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 6.5E-27 2.2E-31 230.6 39.6 346 187-538 8-367 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 6E-27 2.1E-31 230.8 37.8 372 119-525 6-388 (388)
5 4g26_A Pentatricopeptide repea 100.0 3.5E-27 1.2E-31 236.1 23.2 184 273-457 27-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 2.1E-25 7.2E-30 223.2 22.6 200 289-489 7-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 4.2E-23 1.4E-27 211.4 31.1 388 147-540 6-479 (514)
8 3fp2_A TPR repeat-containing p 99.9 8E-23 2.7E-27 210.6 33.2 428 77-512 25-498 (537)
9 2gw1_A Mitochondrial precursor 99.9 5.1E-23 1.8E-27 210.8 31.2 433 77-517 6-490 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 1.2E-21 4.2E-26 197.0 33.4 303 210-519 27-372 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 1.9E-21 6.7E-26 195.5 33.3 358 145-528 24-443 (450)
12 3fp2_A TPR repeat-containing p 99.9 7.2E-21 2.4E-25 196.0 30.3 411 47-470 28-488 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 7.8E-20 2.7E-24 177.6 35.0 295 241-539 3-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 8.3E-19 2.8E-23 170.3 31.3 310 179-523 4-353 (359)
15 1xi4_A Clathrin heavy chain; a 99.9 1.6E-16 5.4E-21 168.5 49.2 479 13-533 843-1378(1630)
16 3hym_B Cell division cycle pro 99.8 1.4E-18 4.6E-23 166.7 26.5 285 239-526 20-321 (330)
17 2xm6_A Protein corresponding t 99.8 1.3E-17 4.4E-22 169.2 34.5 287 223-522 128-452 (490)
18 1fch_A Peroxisomal targeting s 99.8 5.9E-19 2E-23 172.2 23.5 277 253-535 37-355 (368)
19 3hym_B Cell division cycle pro 99.8 3.7E-18 1.3E-22 163.6 27.1 264 270-538 20-298 (330)
20 1xi4_A Clathrin heavy chain; a 99.8 1.5E-15 5E-20 161.3 47.7 407 76-524 984-1415(1630)
21 1b89_A Protein (clathrin heavy 99.8 3.6E-18 1.2E-22 162.7 24.5 285 57-367 15-307 (449)
22 2xm6_A Protein corresponding t 99.8 2.7E-16 9.3E-21 159.4 38.0 353 146-541 38-434 (490)
23 1b89_A Protein (clathrin heavy 99.8 1.7E-18 5.9E-23 164.9 20.2 286 159-470 15-308 (449)
24 2ooe_A Cleavage stimulation fa 99.8 2.8E-16 9.7E-21 161.0 38.0 404 111-540 12-493 (530)
25 3mkr_A Coatomer subunit epsilo 99.8 8.1E-17 2.8E-21 150.5 29.6 270 250-533 8-288 (291)
26 4eqf_A PEX5-related protein; a 99.8 4.9E-18 1.7E-22 165.5 21.0 261 271-535 64-352 (365)
27 3cv0_A Peroxisome targeting si 99.8 2.3E-17 7.7E-22 157.9 21.0 257 275-536 24-312 (327)
28 2ooe_A Cleavage stimulation fa 99.8 2.8E-15 9.6E-20 153.6 35.0 408 73-508 9-495 (530)
29 1fch_A Peroxisomal targeting s 99.8 7.1E-17 2.4E-21 157.3 21.4 255 245-504 68-358 (368)
30 3mkr_A Coatomer subunit epsilo 99.7 1.7E-16 5.9E-21 148.2 23.0 246 279-539 6-264 (291)
31 4g1t_A Interferon-induced prot 99.7 1.1E-15 3.8E-20 154.4 29.3 357 177-547 50-467 (472)
32 4eqf_A PEX5-related protein; a 99.7 2.2E-16 7.6E-21 153.7 23.0 232 306-540 64-311 (365)
33 3cv0_A Peroxisome targeting si 99.7 2.1E-16 7.2E-21 151.2 17.9 261 242-507 22-317 (327)
34 4g1t_A Interferon-induced prot 99.7 2.9E-15 9.8E-20 151.4 24.3 379 110-517 49-471 (472)
35 3uq3_A Heat shock protein STI1 99.7 3.4E-15 1.2E-19 137.3 22.3 216 311-539 9-236 (258)
36 2pl2_A Hypothetical conserved 99.7 1.9E-15 6.4E-20 134.9 19.1 194 339-537 2-212 (217)
37 3uq3_A Heat shock protein STI1 99.7 2.8E-15 9.5E-20 137.9 18.5 234 273-519 6-256 (258)
38 3u4t_A TPR repeat-containing p 99.6 1.9E-14 6.4E-19 133.6 20.8 244 277-524 8-269 (272)
39 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.1E-14 7.3E-19 133.4 20.7 241 284-533 17-269 (275)
40 3e4b_A ALGK; tetratricopeptide 99.6 6.8E-15 2.3E-19 146.7 15.9 374 117-539 8-421 (452)
41 3spa_A Mtrpol, DNA-directed RN 99.6 6.6E-16 2.2E-20 159.0 7.5 125 240-364 126-258 (1134)
42 1ouv_A Conserved hypothetical 99.6 5.8E-13 2E-17 123.6 26.6 225 271-541 5-253 (273)
43 3spa_A Mtrpol, DNA-directed RN 99.6 5.1E-16 1.7E-20 159.8 6.1 130 43-174 126-263 (1134)
44 2h6f_A Protein farnesyltransfe 99.6 1.4E-13 4.9E-18 132.8 22.3 246 272-523 97-366 (382)
45 1ouv_A Conserved hypothetical 99.6 9.7E-13 3.3E-17 122.1 26.8 232 239-510 4-256 (273)
46 3e4b_A ALGK; tetratricopeptide 99.6 1.2E-13 4.2E-18 137.7 22.0 301 227-542 55-390 (452)
47 2pl2_A Hypothetical conserved 99.6 1.4E-13 4.8E-18 122.7 19.9 193 272-470 5-211 (217)
48 2q7f_A YRRB protein; TPR, prot 99.6 6.5E-14 2.2E-18 127.4 17.5 141 374-517 92-234 (243)
49 2q7f_A YRRB protein; TPR, prot 99.6 6.4E-14 2.2E-18 127.5 17.4 196 341-539 22-222 (243)
50 2ho1_A Type 4 fimbrial biogene 99.6 8E-13 2.7E-17 121.0 24.9 167 345-513 74-246 (252)
51 2ho1_A Type 4 fimbrial biogene 99.6 2.8E-13 9.4E-18 124.1 21.4 197 342-540 37-239 (252)
52 2vq2_A PILW, putative fimbrial 99.6 4.4E-13 1.5E-17 120.2 22.2 195 342-538 8-210 (225)
53 3u4t_A TPR repeat-containing p 99.6 3.5E-13 1.2E-17 124.9 20.6 227 309-539 5-250 (272)
54 3vtx_A MAMA; tetratricopeptide 99.6 5.2E-13 1.8E-17 115.7 20.3 165 372-540 4-171 (184)
55 2vq2_A PILW, putative fimbrial 99.5 1.3E-12 4.3E-17 117.2 23.4 204 310-516 11-222 (225)
56 4a1s_A PINS, partner of inscut 99.5 7.4E-14 2.5E-18 138.2 16.2 263 276-539 52-372 (411)
57 3sf4_A G-protein-signaling mod 99.5 3.8E-13 1.3E-17 132.7 20.7 270 240-509 8-340 (406)
58 2h6f_A Protein farnesyltransfe 99.5 5E-13 1.7E-17 129.0 20.4 225 308-538 98-347 (382)
59 3ro2_A PINS homolog, G-protein 99.5 5.3E-13 1.8E-17 127.7 19.8 263 277-540 10-333 (338)
60 4abn_A Tetratricopeptide repea 99.5 1.7E-13 5.7E-18 137.6 16.1 192 340-535 100-317 (474)
61 3sf4_A G-protein-signaling mod 99.5 8.9E-14 3.1E-18 137.2 12.3 263 273-536 10-333 (406)
62 1xnf_A Lipoprotein NLPI; TPR, 99.5 9.8E-13 3.4E-17 122.1 17.1 218 318-540 16-245 (275)
63 3ulq_A Response regulator aspa 99.5 1.2E-12 4.1E-17 128.1 17.4 226 313-539 109-368 (383)
64 4e6h_A MRNA 3'-END-processing 99.5 1.5E-10 5E-15 119.4 33.5 219 289-511 326-576 (679)
65 3vtx_A MAMA; tetratricopeptide 99.4 4.8E-12 1.6E-16 109.5 17.6 167 341-510 4-175 (184)
66 4a1s_A PINS, partner of inscut 99.4 1.1E-12 3.8E-17 129.6 15.0 264 244-507 51-374 (411)
67 4gyw_A UDP-N-acetylglucosamine 99.4 2.8E-12 9.6E-17 133.8 17.5 163 372-538 8-173 (723)
68 4i17_A Hypothetical protein; T 99.4 7E-12 2.4E-16 112.7 18.0 187 342-539 7-209 (228)
69 3nf1_A KLC 1, kinesin light ch 99.4 8E-13 2.7E-17 125.1 12.3 236 272-538 27-306 (311)
70 3ro2_A PINS homolog, G-protein 99.4 2.9E-12 9.9E-17 122.6 15.5 262 247-508 11-335 (338)
71 3as5_A MAMA; tetratricopeptide 99.4 1.2E-11 4.3E-16 106.8 17.8 161 376-539 11-173 (186)
72 2ond_A Cleavage stimulation fa 99.4 9.5E-11 3.2E-15 110.6 24.7 219 289-511 33-276 (308)
73 3ulq_A Response regulator aspa 99.4 5.2E-11 1.8E-15 116.4 22.8 229 278-506 109-369 (383)
74 1hz4_A MALT regulatory protein 99.4 5.6E-10 1.9E-14 108.5 28.7 262 278-539 20-322 (373)
75 2ond_A Cleavage stimulation fa 99.4 5.7E-11 2E-15 112.1 20.8 214 324-542 33-273 (308)
76 4abn_A Tetratricopeptide repea 99.3 3.1E-11 1.1E-15 121.0 19.2 177 358-539 84-287 (474)
77 4e6h_A MRNA 3'-END-processing 99.3 3.1E-09 1.1E-13 109.6 33.5 428 92-542 47-573 (679)
78 3q15_A PSP28, response regulat 99.3 4.8E-11 1.7E-15 116.3 18.8 223 315-538 109-364 (378)
79 4i17_A Hypothetical protein; T 99.3 1.1E-10 3.6E-15 104.9 19.6 206 304-520 4-224 (228)
80 3as5_A MAMA; tetratricopeptide 99.3 1.5E-10 5.3E-15 99.8 19.3 167 343-512 9-180 (186)
81 3q15_A PSP28, response regulat 99.3 1.7E-09 5.8E-14 105.3 25.3 225 281-505 110-365 (378)
82 3nf1_A KLC 1, kinesin light ch 99.2 4.5E-11 1.5E-15 113.0 12.4 238 240-508 26-310 (311)
83 3edt_B KLC 2, kinesin light ch 99.2 1.2E-10 4.2E-15 108.1 14.3 224 284-538 13-280 (283)
84 1qqe_A Vesicular transport pro 99.2 2.2E-10 7.7E-15 107.0 14.7 186 351-536 46-266 (292)
85 3qky_A Outer membrane assembly 99.2 1.6E-09 5.6E-14 99.4 20.3 181 342-539 15-224 (261)
86 1qqe_A Vesicular transport pro 99.2 7E-10 2.4E-14 103.6 16.8 174 344-520 79-284 (292)
87 4gyw_A UDP-N-acetylglucosamine 99.2 2.7E-10 9.1E-15 118.9 14.9 163 341-507 8-176 (723)
88 1hz4_A MALT regulatory protein 99.2 2.9E-09 1E-13 103.4 21.5 258 249-507 22-324 (373)
89 3mv2_B Coatomer subunit epsilo 99.2 8.5E-09 2.9E-13 94.2 22.2 245 248-514 20-291 (310)
90 3mv2_B Coatomer subunit epsilo 99.1 4.3E-09 1.5E-13 96.2 20.2 174 361-539 85-282 (310)
91 2fo7_A Synthetic consensus TPR 99.1 1.1E-09 3.9E-14 88.6 14.9 127 411-539 4-132 (136)
92 4ga2_A E3 SUMO-protein ligase 99.1 2E-10 6.7E-15 95.3 9.9 140 382-525 6-149 (150)
93 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.3E-09 7.9E-14 95.8 17.6 181 343-542 5-216 (225)
94 3qky_A Outer membrane assembly 99.1 1.4E-09 4.7E-14 99.9 16.3 204 304-528 12-250 (261)
95 4ga2_A E3 SUMO-protein ligase 99.1 1E-10 3.6E-15 97.0 7.7 124 414-539 3-129 (150)
96 3rjv_A Putative SEL1 repeat pr 99.1 1.3E-08 4.4E-13 89.8 20.0 163 371-542 16-200 (212)
97 3qou_A Protein YBBN; thioredox 99.1 3.6E-09 1.2E-13 98.4 16.8 176 358-538 102-283 (287)
98 2pzi_A Probable serine/threoni 99.1 7.1E-10 2.4E-14 116.4 12.2 145 374-522 434-580 (681)
99 2fo7_A Synthetic consensus TPR 99.0 8.7E-09 3E-13 83.3 16.0 132 375-509 3-136 (136)
100 3edt_B KLC 2, kinesin light ch 99.0 2E-08 6.9E-13 93.0 19.0 203 272-505 43-281 (283)
101 2vsy_A XCC0866; transferase, g 99.0 6.1E-09 2.1E-13 107.4 16.4 160 355-517 2-169 (568)
102 3gyz_A Chaperone protein IPGC; 99.0 4.7E-09 1.6E-13 86.5 11.9 98 443-540 35-134 (151)
103 2r5s_A Uncharacterized protein 99.0 5.3E-09 1.8E-13 89.3 12.6 155 380-538 13-172 (176)
104 4gco_A Protein STI-1; structur 99.0 1.1E-08 3.6E-13 81.7 13.2 93 446-538 15-109 (126)
105 2vgx_A Chaperone SYCD; alterna 99.0 2.8E-09 9.7E-14 87.9 10.0 97 443-539 20-118 (148)
106 4gco_A Protein STI-1; structur 98.9 8.5E-09 2.9E-13 82.3 11.7 115 404-520 8-125 (126)
107 2ifu_A Gamma-SNAP; membrane fu 98.9 1.4E-08 4.7E-13 95.5 15.1 218 285-531 4-253 (307)
108 3urz_A Uncharacterized protein 98.9 1.7E-08 6E-13 88.7 14.2 128 377-509 58-190 (208)
109 2pzi_A Probable serine/threoni 98.9 4.2E-09 1.5E-13 110.5 11.5 153 384-540 402-564 (681)
110 3qou_A Protein YBBN; thioredox 98.9 4.2E-08 1.4E-12 91.1 16.6 135 405-541 114-250 (287)
111 3u3w_A Transcriptional activat 98.9 3.6E-07 1.2E-11 85.2 22.6 161 378-538 80-265 (293)
112 3urz_A Uncharacterized protein 98.9 3.6E-08 1.2E-12 86.7 14.7 156 379-539 10-186 (208)
113 2vsy_A XCC0866; transferase, g 98.9 3.7E-08 1.3E-12 101.5 16.9 147 320-470 2-154 (568)
114 2qfc_A PLCR protein; TPR, HTH, 98.9 9E-08 3.1E-12 89.3 18.0 163 375-538 77-265 (293)
115 2yhc_A BAMD, UPF0169 lipoprote 98.9 5.3E-08 1.8E-12 86.8 15.5 185 306-511 3-219 (225)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.9 7.5E-08 2.6E-12 85.0 16.2 131 374-510 7-155 (213)
117 2xcb_A PCRH, regulatory protei 98.8 1.8E-08 6.3E-13 82.4 11.0 97 443-539 17-115 (142)
118 2r5s_A Uncharacterized protein 98.8 4E-08 1.4E-12 83.8 13.5 156 345-504 9-172 (176)
119 2ifu_A Gamma-SNAP; membrane fu 98.8 1.7E-08 5.6E-13 95.0 11.9 196 320-537 4-222 (307)
120 1a17_A Serine/threonine protei 98.8 5.3E-08 1.8E-12 82.0 14.0 127 410-538 15-145 (166)
121 2e2e_A Formate-dependent nitri 98.8 3.3E-08 1.1E-12 84.5 12.5 119 419-539 21-144 (177)
122 3dra_A Protein farnesyltransfe 98.8 1E-06 3.5E-11 81.4 23.2 219 286-537 47-285 (306)
123 3upv_A Heat shock protein STI1 98.8 5.2E-08 1.8E-12 77.8 12.1 119 444-582 4-124 (126)
124 2uy1_A Cleavage stimulation fa 98.8 2.2E-06 7.6E-11 85.7 26.4 367 89-504 6-412 (493)
125 2lni_A Stress-induced-phosphop 98.8 6.6E-08 2.2E-12 77.9 12.7 116 408-525 16-133 (133)
126 2vyi_A SGTA protein; chaperone 98.8 7.3E-08 2.5E-12 77.2 12.8 117 409-527 13-131 (131)
127 3rjv_A Putative SEL1 repeat pr 98.8 3.4E-07 1.2E-11 80.6 17.6 174 326-507 5-199 (212)
128 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.1E-07 1.1E-11 81.0 17.5 129 344-475 8-153 (213)
129 3dra_A Protein farnesyltransfe 98.8 5.6E-06 1.9E-10 76.5 26.1 233 250-518 41-301 (306)
130 1na0_A Designed protein CTPR3; 98.8 1.3E-07 4.4E-12 75.0 13.5 115 408-524 9-125 (125)
131 2c2l_A CHIP, carboxy terminus 98.7 3E-08 1E-12 91.8 9.1 189 342-539 4-199 (281)
132 1p5q_A FKBP52, FK506-binding p 98.7 1.3E-07 4.4E-12 90.0 13.8 126 410-537 149-292 (336)
133 3sz7_A HSC70 cochaperone (SGT) 98.7 1.7E-07 5.9E-12 78.7 11.9 109 407-517 10-120 (164)
134 3u3w_A Transcriptional activat 98.7 3.2E-06 1.1E-10 78.7 21.4 158 348-505 81-266 (293)
135 2vgx_A Chaperone SYCD; alterna 98.7 1.1E-07 3.8E-12 78.3 10.0 116 396-515 10-128 (148)
136 4f3v_A ESX-1 secretion system 98.7 3.1E-07 1.1E-11 82.8 13.4 123 414-539 108-237 (282)
137 2lni_A Stress-induced-phosphop 98.6 5E-07 1.7E-11 72.5 13.3 99 441-539 13-113 (133)
138 2kck_A TPR repeat; tetratricop 98.6 1.9E-07 6.6E-12 72.3 10.2 100 443-542 5-109 (112)
139 1elw_A TPR1-domain of HOP; HOP 98.6 6.6E-07 2.3E-11 70.0 13.0 92 447-538 7-100 (118)
140 3gyz_A Chaperone protein IPGC; 98.6 5.7E-07 1.9E-11 73.9 12.8 105 404-510 31-138 (151)
141 2hr2_A Hypothetical protein; a 98.6 4.4E-08 1.5E-12 79.6 5.9 63 477-539 58-131 (159)
142 1elw_A TPR1-domain of HOP; HOP 98.6 6.3E-07 2.2E-11 70.1 12.7 110 409-520 5-116 (118)
143 1hxi_A PEX5, peroxisome target 98.6 1.8E-07 6.1E-12 73.9 9.3 95 446-540 19-115 (121)
144 2fbn_A 70 kDa peptidylprolyl i 98.6 3.2E-07 1.1E-11 79.9 11.9 96 445-540 89-187 (198)
145 3q49_B STIP1 homology and U bo 98.6 4.5E-07 1.6E-11 73.4 12.0 98 442-539 7-106 (137)
146 2e2e_A Formate-dependent nitri 98.6 2.5E-07 8.7E-12 78.8 10.7 128 384-514 21-153 (177)
147 3upv_A Heat shock protein STI1 98.6 4.4E-07 1.5E-11 72.3 11.3 111 409-521 5-123 (126)
148 2dba_A Smooth muscle cell asso 98.6 1.3E-06 4.3E-11 71.7 14.2 95 444-538 28-127 (148)
149 4gcn_A Protein STI-1; structur 98.6 2.6E-07 8.9E-12 73.7 9.6 94 445-538 9-111 (127)
150 3gw4_A Uncharacterized protein 98.6 7.7E-07 2.6E-11 77.6 13.6 129 410-538 28-175 (203)
151 2qfc_A PLCR protein; TPR, HTH, 98.6 1.7E-06 5.7E-11 80.6 16.6 162 344-505 77-266 (293)
152 4f3v_A ESX-1 secretion system 98.6 7.8E-07 2.7E-11 80.2 13.5 136 377-517 106-248 (282)
153 3rkv_A Putative peptidylprolyl 98.6 4.5E-07 1.6E-11 76.0 11.3 63 476-538 63-125 (162)
154 1na0_A Designed protein CTPR3; 98.6 1.3E-06 4.5E-11 69.0 13.5 96 444-539 9-106 (125)
155 2xcb_A PCRH, regulatory protei 98.6 4.2E-07 1.4E-11 74.2 10.6 107 409-517 19-127 (142)
156 2vyi_A SGTA protein; chaperone 98.6 9.5E-07 3.2E-11 70.5 12.7 98 442-539 10-109 (131)
157 3sz7_A HSC70 cochaperone (SGT) 98.5 7.7E-07 2.6E-11 74.7 12.2 94 374-470 12-105 (164)
158 3gw4_A Uncharacterized protein 98.5 7.1E-07 2.4E-11 77.8 11.8 152 354-505 4-176 (203)
159 2fbn_A 70 kDa peptidylprolyl i 98.5 2.1E-07 7.1E-12 81.1 8.1 118 420-539 16-151 (198)
160 2uy1_A Cleavage stimulation fa 98.5 9.1E-05 3.1E-09 74.0 28.1 313 210-536 16-380 (493)
161 1a17_A Serine/threonine protei 98.5 2E-06 7E-11 72.0 13.7 128 374-504 14-145 (166)
162 3q49_B STIP1 homology and U bo 98.5 1.2E-06 3.9E-11 70.9 11.2 113 406-520 7-126 (137)
163 2dba_A Smooth muscle cell asso 98.5 2.3E-06 7.9E-11 70.1 13.1 112 407-521 27-144 (148)
164 3q7a_A Farnesyltransferase alp 98.4 0.00019 6.6E-09 67.0 26.1 175 280-459 62-257 (349)
165 2xev_A YBGF; tetratricopeptide 98.4 1.8E-06 6.3E-11 68.8 10.9 61 478-538 41-104 (129)
166 1elr_A TPR2A-domain of HOP; HO 98.4 2.7E-06 9.1E-11 67.9 11.9 94 445-538 5-107 (131)
167 3q7a_A Farnesyltransferase alp 98.4 5E-05 1.7E-09 70.9 21.2 214 321-538 68-330 (349)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 1.8E-06 6.1E-11 85.8 12.3 96 444-539 317-415 (457)
169 1wao_1 Serine/threonine protei 98.4 8.6E-07 2.9E-11 88.5 10.0 119 415-535 13-135 (477)
170 1elr_A TPR2A-domain of HOP; HO 98.4 4E-06 1.4E-10 66.8 11.8 110 410-522 6-124 (131)
171 2kck_A TPR repeat; tetratricop 98.4 2.8E-06 9.7E-11 65.5 10.4 100 409-510 7-111 (112)
172 2xev_A YBGF; tetratricopeptide 98.3 7.7E-06 2.6E-10 65.1 12.9 105 413-519 7-119 (129)
173 4gcn_A Protein STI-1; structur 98.3 6.6E-06 2.3E-10 65.4 12.2 95 411-507 11-114 (127)
174 1hxi_A PEX5, peroxisome target 98.3 2.3E-06 7.9E-11 67.4 9.3 98 411-510 20-119 (121)
175 1p5q_A FKBP52, FK506-binding p 98.3 5.1E-06 1.7E-10 78.9 12.7 128 373-504 147-293 (336)
176 2if4_A ATFKBP42; FKBP-like, al 98.3 1.8E-06 6E-11 82.1 9.4 149 373-541 179-330 (338)
177 3ro3_A PINS homolog, G-protein 98.3 5.7E-06 2E-10 68.8 11.6 128 411-538 12-157 (164)
178 3rkv_A Putative peptidylprolyl 98.3 2.2E-06 7.6E-11 71.7 8.9 79 443-521 62-143 (162)
179 3k9i_A BH0479 protein; putativ 98.3 6.7E-07 2.3E-11 70.1 5.2 61 478-538 29-89 (117)
180 2c2l_A CHIP, carboxy terminus 98.3 4.9E-06 1.7E-10 76.8 11.9 171 407-583 3-182 (281)
181 3dss_A Geranylgeranyl transfer 98.3 0.00021 7.1E-09 66.4 22.3 191 323-518 90-317 (331)
182 4b4t_Q 26S proteasome regulato 98.3 1E-05 3.4E-10 80.1 14.3 162 376-537 58-243 (434)
183 3dss_A Geranylgeranyl transfer 98.2 0.00033 1.1E-08 65.1 23.0 178 358-538 90-303 (331)
184 1ihg_A Cyclophilin 40; ppiase 98.2 5.7E-06 2E-10 79.5 11.6 89 443-531 272-362 (370)
185 1wao_1 Serine/threonine protei 98.2 1.6E-05 5.5E-10 79.3 15.1 116 350-468 14-134 (477)
186 1ihg_A Cyclophilin 40; ppiase 98.2 9E-06 3.1E-10 78.1 11.7 112 409-539 224-336 (370)
187 3k9i_A BH0479 protein; putativ 98.2 1.7E-06 5.6E-11 67.8 5.5 93 421-514 3-99 (117)
188 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 2E-05 6.7E-10 78.3 14.4 64 476-539 317-380 (457)
189 3n71_A Histone lysine methyltr 98.2 5.2E-06 1.8E-10 82.3 9.9 129 418-546 319-471 (490)
190 2if4_A ATFKBP42; FKBP-like, al 98.2 5.9E-06 2E-10 78.5 10.0 151 342-511 179-334 (338)
191 1dce_A Protein (RAB geranylger 98.1 0.0001 3.5E-09 74.9 18.3 168 358-528 45-244 (567)
192 3ro3_A PINS homolog, G-protein 98.1 1.5E-05 5.2E-10 66.1 10.4 132 375-506 11-159 (164)
193 2hr2_A Hypothetical protein; a 98.1 7.3E-06 2.5E-10 66.5 7.8 107 413-519 16-145 (159)
194 4b4t_Q 26S proteasome regulato 98.1 5.5E-05 1.9E-09 74.7 15.7 159 380-538 11-203 (434)
195 3ma5_A Tetratricopeptide repea 98.1 1.7E-05 5.7E-10 59.9 9.1 66 474-539 5-70 (100)
196 2l6j_A TPR repeat-containing p 98.1 8.6E-06 3E-10 62.8 7.4 93 443-535 3-103 (111)
197 1na3_A Designed protein CTPR2; 98.0 2.4E-05 8.3E-10 57.5 8.8 82 443-524 8-91 (91)
198 3n71_A Histone lysine methyltr 98.0 3.4E-05 1.2E-09 76.4 10.8 114 452-583 317-448 (490)
199 2kat_A Uncharacterized protein 97.9 5E-05 1.7E-09 58.9 9.4 64 475-538 18-81 (115)
200 1klx_A Cysteine rich protein B 97.9 0.00016 5.5E-09 58.2 12.2 90 450-541 31-128 (138)
201 3bee_A Putative YFRE protein; 97.8 0.00011 3.9E-09 54.0 9.4 70 473-542 3-75 (93)
202 2l6j_A TPR repeat-containing p 97.8 8.2E-05 2.8E-09 57.1 8.4 66 475-540 3-68 (111)
203 1zu2_A Mitochondrial import re 97.8 1.7E-05 6E-10 64.2 4.4 96 421-540 15-121 (158)
204 3qww_A SET and MYND domain-con 97.8 3.3E-05 1.1E-09 75.2 7.1 105 456-578 310-432 (433)
205 1na3_A Designed protein CTPR2; 97.8 0.0002 6.9E-09 52.4 10.1 65 475-539 8-72 (91)
206 1dce_A Protein (RAB geranylger 97.8 0.00042 1.4E-08 70.4 15.1 152 386-541 42-223 (567)
207 3qwp_A SET and MYND domain-con 97.7 8.3E-05 2.8E-09 72.6 8.6 116 451-584 294-427 (429)
208 2kat_A Uncharacterized protein 97.7 0.00018 6.3E-09 55.6 9.0 80 427-508 4-85 (115)
209 1klx_A Cysteine rich protein B 97.7 0.00087 3E-08 53.8 13.2 113 386-507 8-128 (138)
210 1zu2_A Mitochondrial import re 97.7 4.2E-05 1.4E-09 61.9 5.1 126 384-540 13-148 (158)
211 2kc7_A BFR218_protein; tetratr 97.5 0.00053 1.8E-08 51.2 8.9 64 450-513 6-72 (99)
212 1wy6_A Hypothetical protein ST 97.4 0.023 8E-07 43.5 16.5 141 383-542 17-157 (172)
213 3ma5_A Tetratricopeptide repea 97.3 0.00075 2.6E-08 50.5 7.4 66 442-507 5-72 (100)
214 2kc7_A BFR218_protein; tetratr 97.2 0.0022 7.6E-08 47.6 9.0 54 415-470 7-61 (99)
215 3qww_A SET and MYND domain-con 97.1 0.0017 5.9E-08 63.1 9.7 95 420-514 310-425 (433)
216 1pc2_A Mitochondria fission pr 97.1 0.004 1.4E-07 49.7 9.9 92 422-515 12-110 (152)
217 3ly7_A Transcriptional activat 97.1 0.016 5.4E-07 54.1 15.3 138 371-510 192-344 (372)
218 3qwp_A SET and MYND domain-con 97.0 0.0033 1.1E-07 61.3 10.7 101 415-515 294-415 (429)
219 1qsa_A Protein (soluble lytic 96.9 0.49 1.7E-05 48.1 32.9 114 387-504 228-347 (618)
220 3ly7_A Transcriptional activat 96.8 0.0071 2.4E-07 56.4 10.8 136 404-542 190-342 (372)
221 3lvg_A Clathrin heavy chain 1; 96.8 2E-05 6.9E-10 74.6 -6.6 259 112-394 54-325 (624)
222 1pc2_A Mitochondria fission pr 96.8 0.0054 1.8E-07 49.0 8.2 76 392-470 17-97 (152)
223 3mkq_A Coatomer beta'-subunit; 96.8 0.13 4.6E-06 55.0 22.1 150 189-366 610-760 (814)
224 2v5f_A Prolyl 4-hydroxylase su 96.8 0.0096 3.3E-07 44.7 9.3 71 447-517 8-87 (104)
225 3lvg_A Clathrin heavy chain 1; 96.7 0.0011 3.6E-08 63.2 4.2 233 43-292 53-324 (624)
226 3mkq_A Coatomer beta'-subunit; 96.7 0.086 3E-06 56.4 19.8 130 311-470 633-762 (814)
227 3u64_A Protein TP_0956; tetrat 96.6 0.008 2.8E-07 53.6 8.5 86 461-546 180-276 (301)
228 2v5f_A Prolyl 4-hydroxylase su 96.4 0.015 5.2E-07 43.6 8.2 65 475-539 4-75 (104)
229 3bee_A Putative YFRE protein; 96.4 0.028 9.6E-07 41.0 9.3 70 441-510 3-77 (93)
230 3mkq_B Coatomer subunit alpha; 96.1 0.42 1.4E-05 39.2 15.8 102 352-471 15-116 (177)
231 1nzn_A CGI-135 protein, fissio 95.8 0.039 1.3E-06 42.3 7.6 92 422-515 15-113 (126)
232 1nzn_A CGI-135 protein, fissio 95.5 0.13 4.3E-06 39.5 9.7 63 406-470 33-100 (126)
233 4gns_B Protein CSD3, chitin bi 95.0 0.094 3.2E-06 54.3 9.9 55 482-536 343-397 (754)
234 4h7y_A Dual specificity protei 95.0 0.23 7.8E-06 39.1 9.6 35 407-443 12-52 (161)
235 3mkq_B Coatomer subunit alpha; 95.0 1.3 4.3E-05 36.4 17.4 129 316-471 14-142 (177)
236 3u64_A Protein TP_0956; tetrat 94.9 2 6.7E-05 38.5 17.6 113 355-470 134-266 (301)
237 3ltm_A Alpha-REP4; protein eng 94.8 1.7 5.7E-05 37.2 19.8 151 147-299 33-183 (211)
238 1y8m_A FIS1; mitochondria, unk 94.7 0.49 1.7E-05 36.9 10.9 74 441-514 36-115 (144)
239 4h7y_A Dual specificity protei 94.2 0.47 1.6E-05 37.4 9.7 37 370-407 10-52 (161)
240 3o48_A Mitochondria fission 1 94.1 0.27 9.2E-06 37.9 8.1 35 477-511 79-113 (134)
241 4ady_A RPN2, 26S proteasome re 93.8 8 0.00027 41.1 29.8 296 182-485 343-670 (963)
242 2ff4_A Probable regulatory pro 93.3 0.19 6.7E-06 48.0 7.8 69 479-547 174-247 (388)
243 3ltj_A Alpharep-4; protein eng 93.2 3.3 0.00011 34.9 21.0 140 146-286 27-166 (201)
244 1wy6_A Hypothetical protein ST 93.1 2.3 8E-05 32.8 13.8 140 282-440 17-156 (172)
245 1qsa_A Protein (soluble lytic 93.1 8.5 0.00029 39.1 32.8 303 221-546 165-486 (618)
246 3ffl_A Anaphase-promoting comp 92.9 0.5 1.7E-05 38.0 8.3 30 444-473 122-151 (167)
247 3ltj_A Alpharep-4; protein eng 92.9 3.7 0.00013 34.5 16.9 82 174-256 86-167 (201)
248 3ffl_A Anaphase-promoting comp 92.2 0.79 2.7E-05 36.9 8.5 123 402-536 12-148 (167)
249 1y8m_A FIS1; mitochondria, unk 91.8 2.5 8.6E-05 33.0 10.6 67 473-539 36-106 (144)
250 3ltm_A Alpha-REP4; protein eng 91.7 5.6 0.00019 33.7 20.4 154 164-322 19-172 (211)
251 3txn_A 26S proteasome regulato 91.2 10 0.00035 35.9 16.5 23 414-436 105-127 (394)
252 3o48_A Mitochondria fission 1 90.8 1.7 5.7E-05 33.5 8.6 45 494-538 61-106 (134)
253 3lpz_A GET4 (YOR164C homolog); 90.6 10 0.00035 34.8 23.4 166 345-538 38-215 (336)
254 1v54_E Cytochrome C oxidase po 90.0 1.8 6E-05 31.3 7.5 63 388-452 25-87 (109)
255 2wpv_A GET4, UPF0363 protein Y 89.6 12 0.00041 34.0 19.6 168 243-436 35-216 (312)
256 2wpv_A GET4, UPF0363 protein Y 88.7 14 0.00047 33.6 21.8 169 345-539 36-217 (312)
257 2ff4_A Probable regulatory pro 88.4 3.7 0.00013 39.1 11.3 72 377-449 175-250 (388)
258 4gns_B Protein CSD3, chitin bi 88.2 3.6 0.00012 42.7 11.6 52 418-471 347-398 (754)
259 4ady_A RPN2, 26S proteasome re 87.4 33 0.0011 36.5 30.7 114 352-470 500-620 (963)
260 1v54_E Cytochrome C oxidase po 87.2 4.1 0.00014 29.5 7.8 49 469-517 38-86 (109)
261 1oyz_A Hypothetical protein YI 87.1 16 0.00054 32.5 19.7 19 175-193 139-157 (280)
262 4b4t_P 26S proteasome regulato 86.8 24 0.0008 34.2 18.3 244 285-541 29-308 (445)
263 3lpz_A GET4 (YOR164C homolog); 86.3 20 0.00068 32.8 21.3 167 244-436 38-215 (336)
264 4fhn_B Nucleoporin NUP120; pro 85.3 13 0.00045 41.2 15.1 59 479-537 902-965 (1139)
265 3esl_A Checkpoint serine/threo 84.6 9.5 0.00033 31.8 10.1 52 492-543 95-148 (202)
266 1zbp_A Hypothetical protein VP 84.1 2.5 8.6E-05 37.2 6.8 56 454-509 7-64 (273)
267 2y69_E Cytochrome C oxidase su 83.6 6.9 0.00024 30.0 8.0 62 389-452 69-130 (152)
268 4b4t_P 26S proteasome regulato 83.1 35 0.0012 33.0 21.4 195 254-468 29-262 (445)
269 2uwj_G Type III export protein 80.0 14 0.00049 26.5 9.4 79 321-403 20-98 (115)
270 1zbp_A Hypothetical protein VP 79.8 28 0.00097 30.6 11.8 53 383-436 7-59 (273)
271 2y69_E Cytochrome C oxidase su 79.8 11 0.00036 29.1 7.8 51 467-517 79-129 (152)
272 2p58_C Putative type III secre 79.4 15 0.00052 26.5 10.1 79 321-403 21-99 (116)
273 4a1g_A Mitotic checkpoint seri 79.4 18 0.00061 28.7 9.6 49 495-543 84-134 (152)
274 4fhn_B Nucleoporin NUP120; pro 78.2 86 0.0029 34.7 18.3 82 309-390 901-988 (1139)
275 4b4t_R RPN7, 26S proteasome re 77.1 27 0.00094 33.5 12.4 93 344-436 133-236 (429)
276 4b4t_R RPN7, 26S proteasome re 74.9 6.5 0.00022 38.0 7.3 96 410-505 133-237 (429)
277 2uwj_G Type III export protein 74.7 21 0.00072 25.7 9.5 76 126-205 20-95 (115)
278 2p58_C Putative type III secre 73.9 22 0.00077 25.6 10.1 76 126-205 21-96 (116)
279 2wvi_A Mitotic checkpoint seri 73.4 28 0.00095 28.0 9.3 49 495-543 79-129 (164)
280 1oyz_A Hypothetical protein YI 61.9 84 0.0029 27.6 23.1 47 240-286 36-82 (280)
281 3kea_A K1L; tropism, ANK repea 61.9 35 0.0012 30.4 9.1 110 55-173 38-152 (285)
282 3bqo_A Telomeric repeat-bindin 56.1 63 0.0022 26.7 8.2 71 460-530 94-171 (211)
283 1wdy_A 2-5A-dependent ribonucl 55.5 83 0.0028 27.4 10.5 46 321-366 193-240 (285)
284 3esl_A Checkpoint serine/threo 53.5 98 0.0033 25.8 10.0 57 386-443 92-149 (202)
285 1n11_A Ankyrin; clathrin, BAND 53.1 1.4E+02 0.0049 28.2 12.4 17 156-172 119-135 (437)
286 3mv2_A Coatomer subunit alpha; 52.8 1E+02 0.0035 27.9 9.9 60 467-540 196-257 (325)
287 1wdy_A 2-5A-dependent ribonucl 52.6 71 0.0024 27.9 9.5 81 248-329 152-238 (285)
288 2nsz_A Programmed cell death p 49.2 86 0.0029 23.9 8.6 66 244-309 10-80 (129)
289 4b4t_S RPN3, 26S proteasome re 48.6 47 0.0016 32.5 7.6 62 409-470 232-296 (523)
290 3kea_A K1L; tropism, ANK repea 46.1 68 0.0023 28.5 8.2 18 154-171 66-83 (285)
291 4gq2_M Nucleoporin NUP120; bet 45.8 1.8E+02 0.0061 31.4 12.5 46 478-523 899-949 (950)
292 2ion_A PDCD4, programmed cell 45.7 77 0.0026 25.1 7.3 66 244-309 12-82 (152)
293 2r9g_A AAA ATPase, central reg 45.4 1.2E+02 0.0042 25.1 8.4 62 277-339 16-85 (204)
294 2nsz_A Programmed cell death p 45.3 90 0.0031 23.8 7.5 65 345-409 10-79 (129)
295 1k1a_A B-cell lymphoma 3-encod 43.7 1.5E+02 0.005 25.0 11.0 25 87-111 16-40 (241)
296 2fu4_A Ferric uptake regulatio 42.6 78 0.0027 21.5 6.4 61 101-162 6-67 (83)
297 1n11_A Ankyrin; clathrin, BAND 40.8 2.4E+02 0.0081 26.6 12.0 200 20-237 22-236 (437)
298 4aez_C MAD3, mitotic spindle c 40.7 97 0.0033 26.3 7.4 31 476-506 150-180 (223)
299 3eu9_A Huntingtin-interacting 39.7 1.7E+02 0.0057 24.5 10.2 13 60-72 20-32 (240)
300 4b4t_S RPN3, 26S proteasome re 39.2 72 0.0024 31.3 7.3 68 444-511 231-305 (523)
301 2d2s_A Exocyst complex compone 38.3 86 0.0029 27.0 7.0 85 83-170 24-114 (235)
302 3eu9_A Huntingtin-interacting 38.1 1.8E+02 0.006 24.3 9.6 77 88-172 17-98 (240)
303 1k1a_A B-cell lymphoma 3-encod 37.9 1.8E+02 0.0062 24.4 10.8 82 18-102 15-101 (241)
304 1ya0_A SMG-7 transcript varian 36.0 1.1E+02 0.0036 30.1 8.1 44 490-533 166-209 (497)
305 3bge_A Predicted ATPase; struc 35.9 1.2E+02 0.004 25.2 6.9 46 277-322 9-57 (201)
306 2ion_A PDCD4, programmed cell 35.7 86 0.0029 24.8 6.1 65 345-409 12-81 (152)
307 2d2s_A Exocyst complex compone 35.6 1.1E+02 0.0038 26.3 7.3 28 441-468 88-115 (235)
308 3ygs_P Procaspase 9; apoptosis 34.6 1.2E+02 0.0042 21.6 6.3 64 30-97 25-88 (97)
309 1te4_A Conserved protein MTH18 34.3 59 0.002 24.6 5.0 18 239-256 85-102 (131)
310 3ctd_A Putative ATPase, AAA fa 34.1 1.5E+02 0.005 24.9 7.3 66 274-339 34-107 (213)
311 3txn_A 26S proteasome regulato 34.0 3E+02 0.01 25.8 25.1 89 441-542 253-346 (394)
312 3bu8_A Telomeric repeat-bindin 32.4 1.5E+02 0.0051 24.9 7.0 20 451-470 121-140 (235)
313 2qx5_A Nucleoporin NIC96; mRNA 31.8 4.3E+02 0.015 26.9 15.2 20 455-474 549-568 (661)
314 4a1g_A Mitotic checkpoint seri 31.6 1.9E+02 0.0065 22.8 9.6 54 390-444 82-136 (152)
315 3ljn_A Hypothetical protein; a 31.3 1.6E+02 0.0054 27.0 8.5 85 55-145 27-114 (364)
316 2fe3_A Peroxide operon regulat 29.4 1.4E+02 0.0046 23.3 6.4 59 399-459 13-71 (145)
317 3b7b_A Euchromatic histone-lys 29.3 2.1E+02 0.0071 24.0 8.4 15 222-236 120-134 (237)
318 1te4_A Conserved protein MTH18 29.3 1.6E+02 0.0055 22.0 6.8 50 110-163 54-103 (131)
319 2crb_A Nuclear receptor bindin 28.3 67 0.0023 22.7 3.6 25 512-536 17-41 (97)
320 2xig_A Ferric uptake regulatio 26.5 2.2E+02 0.0075 22.2 7.1 62 101-163 16-77 (150)
321 2o03_A Probable zinc uptake re 26.4 80 0.0027 24.1 4.4 48 13-62 14-61 (131)
322 3aji_A 26S proteasome non-ATPa 26.4 2.7E+02 0.0091 23.1 8.5 12 60-71 17-28 (231)
323 2xig_A Ferric uptake regulatio 26.3 1.9E+02 0.0066 22.6 6.8 37 422-459 40-76 (150)
324 1wgl_A TOLL-interacting protei 25.7 60 0.0021 20.7 2.9 13 60-72 37-49 (59)
325 2wvi_A Mitotic checkpoint seri 25.5 2.6E+02 0.0089 22.4 9.7 54 391-445 78-132 (164)
326 1mzb_A Ferric uptake regulatio 25.4 1.9E+02 0.0065 22.1 6.5 61 102-163 8-69 (136)
327 2w57_A Ferric uptake regulatio 25.1 2.1E+02 0.0072 22.3 6.8 62 101-163 6-68 (150)
328 3hra_A Ankyrin repeat family p 24.9 2.5E+02 0.0084 22.6 7.8 44 55-100 46-92 (201)
329 3hra_A Ankyrin repeat family p 24.3 2.2E+02 0.0077 22.9 7.4 17 157-173 12-28 (201)
330 3ygs_P Procaspase 9; apoptosis 24.3 98 0.0034 22.1 4.2 37 356-392 51-87 (97)
331 4ets_A Ferric uptake regulatio 24.1 1.9E+02 0.0065 23.0 6.4 69 94-163 14-85 (162)
332 3i5p_A Nucleoporin NUP170; hel 23.9 5.3E+02 0.018 25.4 14.5 68 473-540 175-247 (525)
333 3ljn_A Hypothetical protein; a 23.1 1.8E+02 0.0061 26.7 7.1 141 21-172 29-195 (364)
334 3bu8_A Telomeric repeat-bindin 22.5 95 0.0032 26.1 4.2 47 482-528 120-166 (235)
335 2fe3_A Peroxide operon regulat 22.5 2.2E+02 0.0075 22.0 6.4 60 297-357 12-71 (145)
336 3b7b_A Euchromatic histone-lys 22.4 3.4E+02 0.011 22.6 8.5 138 21-173 20-167 (237)
337 4ets_A Ferric uptake regulatio 22.4 1.6E+02 0.0053 23.5 5.6 61 399-460 24-85 (162)
338 3jxi_A Vanilloid receptor-rela 22.1 1.9E+02 0.0063 24.8 6.7 52 87-138 12-72 (260)
339 3l6a_A Eukaryotic translation 22.0 3.2E+02 0.011 25.3 8.3 25 246-270 17-41 (364)
340 4g8k_A 2-5A-dependent ribonucl 21.7 4.3E+02 0.015 23.6 13.0 15 352-366 246-260 (337)
341 2cfu_A SDSA1; SDS-hydrolase, l 20.9 2E+02 0.0069 29.4 7.3 63 460-525 436-498 (658)
342 3twr_A Tankyrase-2; ankyrin re 20.9 2.9E+02 0.01 21.3 7.5 12 60-71 19-30 (165)
343 2zu6_B Programmed cell death p 20.8 3.2E+02 0.011 24.6 7.9 92 245-336 170-270 (307)
344 3mkr_B Coatomer subunit alpha; 20.7 3.8E+02 0.013 24.3 8.0 61 466-540 186-248 (320)
345 2rfa_A Transient receptor pote 20.4 3.1E+02 0.011 22.7 7.7 24 315-338 159-182 (232)
346 3mwm_A ZUR, putative metal upt 20.1 75 0.0026 24.6 3.1 47 12-60 16-62 (139)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-41 Score=356.48 Aligned_cols=472 Identities=10% Similarity=-0.015 Sum_probs=395.2
Q ss_pred ccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHH
Q 007871 55 TSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134 (586)
Q Consensus 55 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 134 (586)
+... |.+..+...+..++.++...|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|...|++++|..+
T Consensus 63 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 63 TSTD-GSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccc-CccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 4456 7788888888888888999999999999999999999999999985 467888999999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCC-------------------ChhhHHHHHHHHHhCCChh
Q 007871 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK-------------------DLVSWNLVLRGFVECGEMG 195 (586)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~l~~~~~~~g~~~ 195 (586)
++.+.. .+++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 998865 3688999999999999999999999999965444 3789999999999999999
Q ss_pred HHHHHHhhCC--CCChh-HHHHHHHHHhhccCCHHHHHHHHH-----hCCCC----ChhHHHHHHHHHHhcCCHHHHHHH
Q 007871 196 KAREVFDEMP--QKDAI-SWSIMIDGYRKKKGDISSARILFE-----HMPIK----DLISWNSMIDGYAKIGDLVAAQQL 263 (586)
Q Consensus 196 ~A~~~~~~~~--~~~~~-~~~~ll~~~~~~~g~~~~a~~~~~-----~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~ 263 (586)
+|+.+|+++. .|+.. .+..+...+ ...+.. ...... .+... ...+|+.++..|.+.|++++|.++
T Consensus 218 ~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 218 RAKECYKEALMVDAKCYEAFDQLVSNH-LLTADE--EWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHTT-CSCHHH--HHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhhHHHHHHHHhh-cccchh--HHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 9999999998 55543 333333333 222222 222222 22222 334566678889999999999999
Q ss_pred HhhCCC--CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCc
Q 007871 264 FNEMPE--RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341 (586)
Q Consensus 264 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 341 (586)
|+++.+ ++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++...|+.++|..+++.+.+.. +.+
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 999988 889999999999999999999999999999875 4577889999999999999999999999998764 557
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007871 342 MIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418 (586)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 418 (586)
..++..++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++...+ +.+..++..++.+|
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 8899999999999999999999999875 3568899999999999999999999999999853 44778999999999
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhc
Q 007871 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-------PMKPN--LALWGTLLLACRNH 489 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~ 489 (586)
.+.|++++|.++|+++.+ ..+.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|...
T Consensus 452 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYA--LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHTCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 999999999999999998 34568899999999999999999999999987 34676 78999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 490 QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 490 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
|++++|+..++++.+.+|+++.+|..++.+|.+.|++++|.++++++.+.
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.6e-39 Score=334.64 Aligned_cols=473 Identities=8% Similarity=0.005 Sum_probs=402.0
Q ss_pred CCChhhHhHHHHHhccCCCCChHHHHHHHhcc--CCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHH
Q 007871 41 ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI--YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFV 118 (586)
Q Consensus 41 ~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 118 (586)
.+++..++.++. .+.+. |++++|..+|+++ ..|+..++..++.+|.+.|++++|..+|+.+... .++..+++.+
T Consensus 81 ~~~~~~~~~~~~-~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWRH-DALMQ-QQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHHH-HHHHT-TCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHc-cCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 367888999999 89999 9999999999998 4578889999999999999999999999998653 6788899999
Q ss_pred HHHHhccCCchHHHHHHHHHHHh---------------CCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCC---Chhh
Q 007871 119 LKACGVLMGLVEGTEIHGEVVKM---------------GFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK---DLVS 180 (586)
Q Consensus 119 l~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~ 180 (586)
+.++.+.|++++|.++|+++... |.+++..+|+.++.+|.+.|++++|.+.|+++... +..+
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 99999999999999999853211 22446889999999999999999999999988642 4555
Q ss_pred HHHHHHHHHhCCChhHHHHH---HhhCCC----CChhHHHHHHHHHhhccCCHHHHHHHHHhCCC--CChhHHHHHHHHH
Q 007871 181 WNLVLRGFVECGEMGKAREV---FDEMPQ----KDAISWSIMIDGYRKKKGDISSARILFEHMPI--KDLISWNSMIDGY 251 (586)
Q Consensus 181 ~~~l~~~~~~~g~~~~A~~~---~~~~~~----~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~ 251 (586)
+..+...+...+..+.+... +..+.. .....|+.++..+ .+.|++++|.++|+.+.. ++..+++.++..|
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKT-SHEDELRRAEDYLSSINGLEKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTT-TTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHH-cCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 66665555444332222211 222221 1223445556667 889999999999999986 7999999999999
Q ss_pred HhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHH
Q 007871 252 AKIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328 (586)
Q Consensus 252 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 328 (586)
.+.|++++|.++|+++.+ .+..+|+.++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|..
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999999863 467889999999999999999999999999763 6678899999999999999999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 007871 329 IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405 (586)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 405 (586)
+|+.+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|.++|+++.+. .+
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~ 472 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-FQ 472 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC
Confidence 999998864 4467899999999999999999999999875 357889999999999999999999999999985 34
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhh---CCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHH
Q 007871 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC---GIEPK--LEHYSCLVDLLSRAGELEQALNIVESM-PM-KPNLAL 478 (586)
Q Consensus 406 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~ 478 (586)
.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++ .. +.+..+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 578899999999999999999999999998732 55676 789999999999999999999999987 22 347899
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 521 (586)
|..+..+|...|++++|...++++.+.+|+++..+..++.+|.
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=6.5e-27 Score=230.58 Aligned_cols=346 Identities=11% Similarity=0.037 Sum_probs=198.2
Q ss_pred HHHhCCChhHHHHHHhhCC--CCChhHHHHHHHHHhhccCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCHHHHH
Q 007871 187 GFVECGEMGKAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHMP---IKDLISWNSMIDGYAKIGDLVAAQ 261 (586)
Q Consensus 187 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 261 (586)
.+.+.|++++|+..++.+. .|+......++..++...|++++|...++... +.+..+|..+...+.+.|++++|.
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 3444455555555554443 33333333333322245555555555544333 334555666666666666666666
Q ss_pred HHHhhCCC--C-ChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCC
Q 007871 262 QLFNEMPE--R-NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338 (586)
Q Consensus 262 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 338 (586)
..|+++.+ | +..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...|+.+.+..
T Consensus 88 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 165 (388)
T 1w3b_A 88 EHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 66665542 2 33456666666666666666666666666542 2233344455555566666666666666665553
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 007871 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGV 414 (586)
Q Consensus 339 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l 414 (586)
+.+..++..+..++...|++++|...|+++. ..+...|..+...+...|++++|+..+++.... .| +..++..+
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 243 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNL 243 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHH
Confidence 2334556666666666666666666666554 223455666666666666666666666666552 33 34556666
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCh
Q 007871 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM--PMKPNLALWGTLLLACRNHQNV 492 (586)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~ 492 (586)
..++...|++++|...++++.+ ..+.+..++..++.++.+.|++++|.+.++++ ..+++..++..+...+...|++
T Consensus 244 ~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 244 ACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH
Confidence 6666666666666666666665 23334556666666666666666666666655 1233556666666666666666
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 493 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
++|+..++++.+..|+++.++..++.+|.+.|++++|...++++.+
T Consensus 322 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666666666666666666666666666666666666666654
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=6e-27 Score=230.79 Aligned_cols=372 Identities=10% Similarity=0.021 Sum_probs=283.5
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC---CCChhhHHHHHHHHHhCCChh
Q 007871 119 LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE---IKDLVSWNLVLRGFVECGEMG 195 (586)
Q Consensus 119 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 195 (586)
...+...|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++... +.+..+|..+...+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 344556777777777777776643 2234455566666667777777766665432 234556666666666666666
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-Ch
Q 007871 196 KAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE--R-NV 272 (586)
Q Consensus 196 ~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~ 272 (586)
+|+..|+++.. ..+.+..+|..+..++.+.|++++|.+.|+++.+ | +.
T Consensus 85 ~A~~~~~~al~-----------------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 135 (388)
T 1w3b_A 85 EAIEHYRHALR-----------------------------LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY 135 (388)
T ss_dssp HHHHHHHHHHH-----------------------------HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHH-----------------------------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 66666655430 0122444566666667777777777777766653 3 34
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007871 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352 (586)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 352 (586)
..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+.+.+.+ +.+...+..+..++
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 213 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVL 213 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 556677777788888888888888887753 4456777788888888888888888888887765 34566778888888
Q ss_pred HhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 007871 353 MKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR 429 (586)
Q Consensus 353 ~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 429 (586)
...|++++|...+++.. ..+..++..+...|...|++++|+..|+++.+.+ +.+..++..+..++...|++++|..
T Consensus 214 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 292 (388)
T 1w3b_A 214 KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAED 292 (388)
T ss_dssp HTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888665 3457788899999999999999999999999842 3356789999999999999999999
Q ss_pred HHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007871 430 IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 507 (586)
.++++.+ ..+.+..++..++.++...|++++|.+.++++ ...| +...+..+...+...|++++|...++++.+..|
T Consensus 293 ~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 293 CYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999998 35678899999999999999999999999987 3344 678899999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCC
Q 007871 508 DDCGLYVLLSNIYADAGM 525 (586)
Q Consensus 508 ~~~~~~~~l~~~~~~~g~ 525 (586)
.++.++..++.++...|+
T Consensus 371 ~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 371 TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHhHHHHHHHccC
Confidence 999999999999888764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=3.5e-27 Score=236.07 Aligned_cols=184 Identities=16% Similarity=0.148 Sum_probs=169.2
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---------hhHHHHHHHHHHHcCCCCchh
Q 007871 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA---------LDLGKWIHVFMKRSRITMDMI 343 (586)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 343 (586)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|..+|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999987654 578999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 007871 344 VQTALIDMYMKCGSLDEARRIFYSMT----KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419 (586)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 419 (586)
+|++++.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999886 48999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc
Q 007871 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA 457 (586)
Q Consensus 420 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 457 (586)
+.|++++|.+++++|.+ .+..|+..||+.++..+...
T Consensus 187 ~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999998 59999999999999888753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=2.1e-25 Score=223.22 Aligned_cols=200 Identities=12% Similarity=0.110 Sum_probs=172.7
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC---------H
Q 007871 289 KEALYLFREMLCQGVRPDV-ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS---------L 358 (586)
Q Consensus 289 ~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 358 (586)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|..+|++|.+.|++||..+|++|+.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777766554 45888999999999999999999999999999999999999999987664 7
Q ss_pred HHHHHHHhccC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 007871 359 DEARRIFYSMT----KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434 (586)
Q Consensus 359 ~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 434 (586)
+.|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999987 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 007871 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM---PMKPNLALWGTLLLACRNH 489 (586)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~ 489 (586)
.+ .|+.||..+|+.|+.+|++.|+.++|.+++++| +..|+..||+.++..|...
T Consensus 167 ~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99 599999999999999999999999999999999 5789999999999988753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.2e-23 Score=211.44 Aligned_cols=388 Identities=10% Similarity=-0.037 Sum_probs=311.0
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCC--CCChhhHHHHHHHHHhCCChhHHHHHHhhCC--CC-ChhHHHHHHHHHhh
Q 007871 147 VFVVNGLIGMYSKCGHMGCARSVFEGSE--IKDLVSWNLVLRGFVECGEMGKAREVFDEMP--QK-DAISWSIMIDGYRK 221 (586)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~ 221 (586)
...+..+...+.+.|++++|...|+++. .|+..+|..+..++.+.|++++|+..++++. .| +...+..+...+ .
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN-E 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH-H
Confidence 4567778889999999999999998775 3688899999999999999999999999987 44 456777777777 8
Q ss_pred ccCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCHHHHHHHH----------------------------------
Q 007871 222 KKGDISSARILFEHMP---IKDLISWNSMIDGYAKIGDLVAAQQLF---------------------------------- 264 (586)
Q Consensus 222 ~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~---------------------------------- 264 (586)
..|++++|...|+.+. +++......++..+........+.+.+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999998775 223333444444333322222222211
Q ss_pred ----hhCCC---------C-ChhHHHHHHHHHHh---CCCchHHHHHHHHHHH-----CCC--------CCCHHHHHHHH
Q 007871 265 ----NEMPE---------R-NVFSWSIMIDGYAQ---HGNPKEALYLFREMLC-----QGV--------RPDVISVMGAI 314 (586)
Q Consensus 265 ----~~~~~---------~-~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~-----~g~--------~~~~~~~~~l~ 314 (586)
..... | +...+......+.. .|++++|...|+++.+ ... +.+...+..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 11110 1 13444444554554 8999999999999988 311 22345677888
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHH
Q 007871 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEE 391 (586)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 391 (586)
..+...|++++|...++.+.+.... ...+..+..+|...|++++|...++.+.+ .+...+..+...+...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8899999999999999999888644 88888999999999999999999998763 467789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 007871 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM- 470 (586)
Q Consensus 392 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 470 (586)
|...++++.... +.+...+..+...+...|++++|...++.+.+. .+.+...+..++.+|...|++++|...++++
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999852 335678889999999999999999999999883 4557788999999999999999999999887
Q ss_pred ---CCCCC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 471 ---PMKPN----LALWGTLLLACRN---HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 471 ---~~~p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
+..++ ...+..+...+.. .|++++|...++++.+..|.++.++..++.+|.+.|++++|...++++.+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 22222 4488888999999 9999999999999999999999999999999999999999999999998753
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=8e-23 Score=210.60 Aligned_cols=428 Identities=11% Similarity=-0.036 Sum_probs=229.8
Q ss_pred cchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007871 77 TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGM 156 (586)
Q Consensus 77 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 156 (586)
...|..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++...|++++|.+.++++.+.. +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567788888999999999999999998864 3366788888888999999999999999988865 3456788888888
Q ss_pred HHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCC--C----ChhHHHHHHHHHhhccCCHHHHH
Q 007871 157 YSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ--K----DAISWSIMIDGYRKKKGDISSAR 230 (586)
Q Consensus 157 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~ll~~~~~~~g~~~~a~ 230 (586)
+...|++++|...|+.+ ..++......+..+...+....|...++.+.. | ........+..+ ....+.+.+.
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 180 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASF-FGIFDSHLEV 180 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHH-HHTSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHH-HHhcChHHHH
Confidence 99999999998888633 22222233334455556666777777777751 1 111112222223 3344455555
Q ss_pred HHHHhCCCCChh---HHHHHHHHHHhc--------CCHHHHHHHHhhCCC--CC--------hhHHHHHHHHHHhCCCch
Q 007871 231 ILFEHMPIKDLI---SWNSMIDGYAKI--------GDLVAAQQLFNEMPE--RN--------VFSWSIMIDGYAQHGNPK 289 (586)
Q Consensus 231 ~~~~~~~~~~~~---~~~~l~~~~~~~--------g~~~~A~~~~~~~~~--~~--------~~~~~~l~~~~~~~~~~~ 289 (586)
..+......+.. ....+...+... |++++|..+|+++.+ |+ ..++..+...+...|+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 555444433222 233333222221 355666666665543 22 123444455555666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 007871 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369 (586)
Q Consensus 290 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (586)
+|...++++.+. .|+...+..+...+...|+++.|...++.+.+.. +.+..++..+..+|...|++++|...++++.
T Consensus 261 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 261 DAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 666666666654 3345555555566666666666666666655543 2234455555555555555555555555443
Q ss_pred ---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCC----
Q 007871 370 ---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP---- 442 (586)
Q Consensus 370 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---- 442 (586)
..+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++.+.+.....+
T Consensus 338 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK-FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 123344555555555555555555555555542 122234445555555555555555555555444110000
Q ss_pred ChHHHHHHHHHHhhc----------CCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 443 KLEHYSCLVDLLSRA----------GELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
....+..+..++... |++++|...++++ . .+.+...+..+...+...|++++|...++++.+..|.++
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 111122333444444 5555555555444 1 112344444444445555555555555555555554444
Q ss_pred ch
Q 007871 511 GL 512 (586)
Q Consensus 511 ~~ 512 (586)
..
T Consensus 497 ~~ 498 (537)
T 3fp2_A 497 EK 498 (537)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.1e-23 Score=210.77 Aligned_cols=433 Identities=11% Similarity=-0.032 Sum_probs=324.9
Q ss_pred cchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007871 77 TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGM 156 (586)
Q Consensus 77 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 156 (586)
...|..+...+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|...++.+.+.. +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3467778888999999999999999998864 688899999999999999999999999999865 3456788899999
Q ss_pred HHhcCChhHHHHHhccCCC---CChhhHHHHHHHHHhCCChhHHHHHHhhCC----CCChhHHHHH---HHHHhhccCCH
Q 007871 157 YSKCGHMGCARSVFEGSEI---KDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIM---IDGYRKKKGDI 226 (586)
Q Consensus 157 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l---l~~~~~~~g~~ 226 (586)
|...|++++|...|+++.. .+......++..+........+...+..+. .|+...+..- .... ......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ-ENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc-cCCchh
Confidence 9999999999999876542 234444445544444433333333332211 0111000000 0000 111111
Q ss_pred HHHHHHHHhCC----------CCChhHHHHHHHHHHh---cCCHHHHHHHHhhCCC----------------C-ChhHHH
Q 007871 227 SSARILFEHMP----------IKDLISWNSMIDGYAK---IGDLVAAQQLFNEMPE----------------R-NVFSWS 276 (586)
Q Consensus 227 ~~a~~~~~~~~----------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~ 276 (586)
..+...+.... +.+...+......+.. .|++++|...|+++.+ | +..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 11111222111 1234555555555554 8999999999887654 1 346788
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 007871 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356 (586)
Q Consensus 277 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 356 (586)
.+...+...|++++|...++++.+.. |+...+..+..++...|++++|...++.+.+.. +.+..++..+..+|...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 88899999999999999999999875 337788889999999999999999999998875 446678889999999999
Q ss_pred CHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 007871 357 SLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433 (586)
Q Consensus 357 ~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (586)
++++|...++.+. ..+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++.
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999875 346778899999999999999999999999884 233567888999999999999999999999
Q ss_pred hHHhhCCCCC----hHHHHHHHHHHhh---cCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 434 MKRHCGIEPK----LEHYSCLVDLLSR---AGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 434 ~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
+.......++ ...+..++.++.. .|++++|.+.++++ . .+.+...+..+...+...|++++|...++++.+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8873222222 3489999999999 99999999999987 2 234678888999999999999999999999999
Q ss_pred cCCCCcchHHHHH
Q 007871 505 LKADDCGLYVLLS 517 (586)
Q Consensus 505 ~~p~~~~~~~~l~ 517 (586)
..|.++..+..+.
T Consensus 478 ~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 478 LARTMEEKLQAIT 490 (514)
T ss_dssp HCSSHHHHHHHHH
T ss_pred hccccHHHHHHHH
Confidence 9999988877663
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.2e-21 Score=196.95 Aligned_cols=303 Identities=13% Similarity=0.039 Sum_probs=162.8
Q ss_pred hHHHHHHHHHhhccCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHH
Q 007871 210 ISWSIMIDGYRKKKGDISSARILFEHMP---IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYA 283 (586)
Q Consensus 210 ~~~~~ll~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 283 (586)
..+..+...+ .+.|++++|...|+.+. +.+..++..+..++...|++++|...|+++.+ .+..++..+..++.
T Consensus 27 ~~~~~~~~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 27 EKHLELGKKL-LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 3444455555 56666666666666543 23555666666666666666666666666543 23455666666666
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCH---HHHHHHHHH------------HhccCChhHHHHHHHHHHHcCCCCchhHHHHH
Q 007871 284 QHGNPKEALYLFREMLCQGVRPDV---ISVMGAISA------------CAQVGALDLGKWIHVFMKRSRITMDMIVQTAL 348 (586)
Q Consensus 284 ~~~~~~~A~~~~~~m~~~g~~~~~---~~~~~l~~~------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 348 (586)
..|++++|...|+++.+.. +.+. ..+..+... +...|++++|...++.+.+.. +.+..++..+
T Consensus 106 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 183 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELR 183 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 6666666666666666542 2222 334433222 455556666666665555543 2344455555
Q ss_pred HHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHH----------
Q 007871 349 IDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGV---------- 414 (586)
Q Consensus 349 ~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l---------- 414 (586)
+.+|...|++++|.+.|+.+. ..+..+|..++..|...|++++|+..|+++.. ..|+. ..+..+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~ 261 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLI 261 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHH
Confidence 555556666666655555544 23455555555555566666666666655554 22322 222222
Q ss_pred --HHHhhccCCHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 007871 415 --LIACSHSGLATEGYRIFQSMKRHCGIEPK----LEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLAC 486 (586)
Q Consensus 415 --~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 486 (586)
...|...|++++|..+++.+.+. .+.+ ...+..++.++.+.|++++|...++++ ...| +...|..+..+|
T Consensus 262 ~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 262 ESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 44555555555555555555552 1111 234555555555555555555555554 2222 455555555555
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 007871 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519 (586)
Q Consensus 487 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 519 (586)
...|++++|...++++++..|.++.++..++.+
T Consensus 340 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 555555555555555555555555555555443
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.9e-21 Score=195.46 Aligned_cols=358 Identities=10% Similarity=-0.027 Sum_probs=227.5
Q ss_pred CchhHHHHHHHHHHhcCChhHHHHHhccCC---CCChhhHHHHHHHHHhCCChhHHHHHHhhCC--CC-ChhHHHHHHHH
Q 007871 145 CDVFVVNGLIGMYSKCGHMGCARSVFEGSE---IKDLVSWNLVLRGFVECGEMGKAREVFDEMP--QK-DAISWSIMIDG 218 (586)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~ll~~ 218 (586)
.+...+..+...+.+.|++++|..+|+++. +.+..+|..+..++...|++++|+..|+++. .| +...+..+...
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 345566777777777777777777776543 2356667777777777777777777776665 22 23334444444
Q ss_pred HhhccCCHHHHHHHHHhCCCC---Ch---hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHH
Q 007871 219 YRKKKGDISSARILFEHMPIK---DL---ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292 (586)
Q Consensus 219 ~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 292 (586)
+ ...|++++|...|+.+... +. ..+..++..+... .+..+...+...|++++|+
T Consensus 104 ~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 104 L-LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp H-HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHHH
T ss_pred H-HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHHH
Confidence 4 5555555555555544321 22 3333332221100 1112233466677777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--
Q 007871 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK-- 370 (586)
Q Consensus 293 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 370 (586)
..|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+.+..
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777776653 4456666667777777777777777777766553 34556667777777777777777777776642
Q ss_pred C-CHhHHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHhhccCCHHHHHHHHH
Q 007871 371 K-NVISYNVM------------IAGLGMNGFGEEALKCFAQMETEGIPKD-----DLIFLGVLIACSHSGLATEGYRIFQ 432 (586)
Q Consensus 371 ~-~~~~~~~l------------~~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (586)
| +...+..+ ...+...|++++|...|+++.. ..|+ ...+..+..++.+.|++++|...++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2 33333333 7778888999999999998887 3454 3467778888888999999999999
Q ss_pred HhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH------------HHhcC-----ChH
Q 007871 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLA------------CRNHQ-----NVT 493 (586)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~------------~~~~~-----~~~ 493 (586)
.+.+ ..+.+...+..++.+|...|++++|...++++ ...| +...+..+..+ |...| +.+
T Consensus 320 ~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ 397 (450)
T 2y4t_A 320 EVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397 (450)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT
T ss_pred HHHH--hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH
Confidence 8877 24557788888999999999999999998877 4455 45555555522 33333 667
Q ss_pred HHHHHHHH-HHhcCCCCcc----------hHHHHHHHHHhcCCchH
Q 007871 494 LAEVVVEG-LVELKADDCG----------LYVLLSNIYADAGMWEH 528 (586)
Q Consensus 494 ~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 528 (586)
++.+.+++ +.+..|++.. .+..+..+|...|+.+.
T Consensus 398 ~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 398 EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 78888886 6666676432 44555666666665544
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=7.2e-21 Score=195.99 Aligned_cols=411 Identities=11% Similarity=-0.003 Sum_probs=295.9
Q ss_pred HhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHh
Q 007871 47 LSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123 (586)
Q Consensus 47 ~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 123 (586)
+..+-. .+.+. |++++|.+.|+++ .+.+..+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..++.
T Consensus 28 ~~~~g~-~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 28 LKNRGN-HFFTA-KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHH-HHHHT-TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHh-ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 344444 56666 8888888888776 44566777788888888888888888888877753 224566777777778
Q ss_pred ccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCC------ChhhHHHHHHHHHhCCChhHH
Q 007871 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK------DLVSWNLVLRGFVECGEMGKA 197 (586)
Q Consensus 124 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A 197 (586)
..|++++|...++.+ . ..|+.. ...+..+...+....|...++++... ........+..+....+.+.+
T Consensus 105 ~~g~~~~A~~~~~~~-~--~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-S--LNGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHH-h--cCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 888888888877522 2 122211 22233444455556677666655431 111223445556666677777
Q ss_pred HHHHhhCCCCChh---HHHHHHHHHhhc--------cCCHHHHHHHHHhCCCC---C-------hhHHHHHHHHHHhcCC
Q 007871 198 REVFDEMPQKDAI---SWSIMIDGYRKK--------KGDISSARILFEHMPIK---D-------LISWNSMIDGYAKIGD 256 (586)
Q Consensus 198 ~~~~~~~~~~~~~---~~~~ll~~~~~~--------~g~~~~a~~~~~~~~~~---~-------~~~~~~l~~~~~~~g~ 256 (586)
...+......+.. ....+...+ .. .|++++|..+++.+... + ..++..+...+...|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLY-SATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHH-TCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhccccccHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 7666666533222 222222222 22 24778888888777632 2 2346777788899999
Q ss_pred HHHHHHHHhhCCC--CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 007871 257 LVAAQQLFNEMPE--RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334 (586)
Q Consensus 257 ~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 334 (586)
+++|...|++..+ |+...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus 259 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 259 LLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999874 667888899999999999999999999999864 5567889999999999999999999999998
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCC
Q 007871 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG-----IPK 406 (586)
Q Consensus 335 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-----~~p 406 (586)
+.. +.+...+..+..+|...|++++|...++.+. ..+...+..+...+...|++++|...|+++.+.. ...
T Consensus 338 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 338 SLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 875 3456788889999999999999999999876 3466789999999999999999999999987632 111
Q ss_pred CHHHHHHHHHHhhcc----------CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 407 DDLIFLGVLIACSHS----------GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 407 ~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
....+.....++... |++++|...++++.+ ..+.+...+..++.+|...|++++|.+.|++.
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE--LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 122344555667777 999999999999988 34567889999999999999999999999987
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=7.8e-20 Score=177.60 Aligned_cols=295 Identities=11% Similarity=0.042 Sum_probs=217.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007871 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISAC 317 (586)
Q Consensus 241 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 317 (586)
+..+..+...+...|++++|...|+++.+ .+..++..+..++...|++++|...++++.+.. +.+...+..+..++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 34555566666666666666666666543 345566666666667777777777777666552 33455666666666
Q ss_pred hccCChhHHHHHHHHHHHcCCC--CchhHHHHH------------HHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHH
Q 007871 318 AQVGALDLGKWIHVFMKRSRIT--MDMIVQTAL------------IDMYMKCGSLDEARRIFYSMT---KKNVISYNVMI 380 (586)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~ 380 (586)
...|++++|...++.+.+.... .+...+..+ ...+...|++++|.+.++.+. ..+...+..+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 6777777777777666655320 123333333 577888899999999988775 34677888888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHH------------
Q 007871 381 AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS------------ 448 (586)
Q Consensus 381 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------------ 448 (586)
..+...|++++|...++++... .+.+..++..+...+...|++++|...++.+.+. .+.+...+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHH
Confidence 8999999999999999998875 3446678888888999999999999999998873 333444333
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007871 449 CLVDLLSRAGELEQALNIVESM-PMKPN-L----ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522 (586)
Q Consensus 449 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 522 (586)
.++..+.+.|++++|...++++ ...|+ . ..+..+...+...|++++|+..++++.+.+|.++.++..++.+|..
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3367788999999999999887 22333 3 2344567778999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhC
Q 007871 523 AGMWEHALRIRKMMRKR 539 (586)
Q Consensus 523 ~g~~~~A~~~~~~m~~~ 539 (586)
.|++++|.+.++++.+.
T Consensus 319 ~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 99999999999999763
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=8.3e-19 Score=170.31 Aligned_cols=310 Identities=12% Similarity=0.017 Sum_probs=220.3
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 007871 179 VSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLV 258 (586)
Q Consensus 179 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 258 (586)
..+..+...+...|++++|+..|+++.. ..+.+..++..+...+...|+++
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~-----------------------------~~p~~~~~~~~~a~~~~~~~~~~ 54 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVD-----------------------------GDPDNYIAYYRRATVFLAMGKSK 54 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------HCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------------------------hCcccHHHHHHHHHHHHHccCHH
Confidence 4455555666666666666666655440 01223445555555566666666
Q ss_pred HHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCC---CCHHHHHHH------------HHHHhcc
Q 007871 259 AAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR---PDVISVMGA------------ISACAQV 320 (586)
Q Consensus 259 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~---~~~~~~~~l------------~~~~~~~ 320 (586)
+|...|+++.+ .+...|..+...+...|++++|...++++.+.. + .+...+..+ ...+...
T Consensus 55 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 55 AALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDG 133 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 66666665542 244566666666666677777777776666542 1 122233222 4667778
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHH
Q 007871 321 GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFA 397 (586)
Q Consensus 321 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 397 (586)
|++++|...++.+.+.. +.+...+..+..++...|++++|...++.+.+ .+...+..+...+...|++++|...++
T Consensus 134 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888888887765 34567777888888888888888888887653 466788888888889999999999998
Q ss_pred HHHHCCCCCC-HHHHH------------HHHHHhhccCCHHHHHHHHHHhHHhhCCCCCh----HHHHHHHHHHhhcCCH
Q 007871 398 QMETEGIPKD-DLIFL------------GVLIACSHSGLATEGYRIFQSMKRHCGIEPKL----EHYSCLVDLLSRAGEL 460 (586)
Q Consensus 398 ~m~~~g~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~ 460 (586)
+..+. .|+ ...+. .+...+...|++++|...++.+.+. .+.+. ..+..++.++...|++
T Consensus 213 ~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 213 ECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCH
Confidence 88873 343 33332 2356688899999999999999883 23333 3355688999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 007871 461 EQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA 523 (586)
Q Consensus 461 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 523 (586)
++|.+.+++. ...| +...+..+...+...|++++|...++++.+.+|.++.++..+..++...
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999999987 2234 7888999999999999999999999999999999999999888776543
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=1.6e-16 Score=168.52 Aligned_cols=479 Identities=13% Similarity=0.085 Sum_probs=338.8
Q ss_pred hhHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHH------------HHhccCCCCc---
Q 007871 13 NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAER------------LFNQIYQPNT--- 77 (586)
Q Consensus 13 ~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~------------~~~~~~~~~~--- 77 (586)
..|+.......++.-..-.++..+..| ..++.++|++.. .|....++++.-+. .-++- .|..
T Consensus 843 ~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalak-iyid~n~npe~fL~~n~~yd~~~vgkyce~r-Dp~la~i 919 (1630)
T 1xi4_A 843 DELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAK-IYIDSNNNPERFLRENPYYDSRVVGKYCEKR-DPHLACV 919 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHH-HHhccCCCHHHHhhccCcccHHHHHHHHHhc-CcchHHH
Confidence 344444444445555555577777777 688999999999 89876345555322 22211 1111
Q ss_pred -----chHHHHHHHHhcCCCchh-HHHHHH-----------------------HhHhCC--CCCCcccHHHHHHHHhccC
Q 007871 78 -----YMHNTMIRGYTQSSNPQK-ALSFYV-----------------------NMKRKG--LLVDNYTYPFVLKACGVLM 126 (586)
Q Consensus 78 -----~~~~~ll~~~~~~~~~~~-A~~~~~-----------------------~m~~~~--~~~~~~~~~~ll~~~~~~~ 126 (586)
..-.-|++.+.+++-++. |.-+++ ...... -..++.--....+++...|
T Consensus 920 ay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~ag 999 (1630)
T 1xi4_A 920 AYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTAD 999 (1630)
T ss_pred HhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCC
Confidence 112234444433333321 111111 111100 1223333455667777888
Q ss_pred CchHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhC
Q 007871 127 GLVEGTEIHGEVVKMG--FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM 204 (586)
Q Consensus 127 ~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 204 (586)
.+.++.+++++..-.+ +..+....+.|+.+..+. +..+..++.++...-+ ...+...+...|.+++|..+|++.
T Consensus 1000 lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa 1075 (1630)
T 1xi4_A 1000 LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKF 1075 (1630)
T ss_pred CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 8888888888887432 112345566677777666 5677777776665333 455788889999999999999997
Q ss_pred CCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHh
Q 007871 205 PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQ 284 (586)
Q Consensus 205 ~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 284 (586)
..+ ....+.++ ...+++++|.++.++. .++.+|..+..++...|++++|.+.|.+. .|...|..++.++.+
T Consensus 1076 ~~~-~~A~~VLi----e~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~ 1146 (1630)
T 1xi4_A 1076 DVN-TSAVQVLI----EHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANT 1146 (1630)
T ss_pred CCH-HHHHHHHH----HHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHH
Confidence 522 22223333 3568999999999977 45788999999999999999999999775 677788889999999
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007871 285 HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364 (586)
Q Consensus 285 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 364 (586)
.|++++|.+.|...++.. +++...+.++.+|++.++++....+. + .++...+..+...|...|++++|..+
T Consensus 1147 lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~ 1217 (1630)
T 1xi4_A 1147 SGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLL 1217 (1630)
T ss_pred cCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999888764 33333445888999999888644443 1 34556677899999999999999999
Q ss_pred HhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCCh
Q 007871 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444 (586)
Q Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 444 (586)
|..+ ..|..+...|.+.|++++|.+.+++. .+..+|..+..+|...|++..|...... +..++
T Consensus 1218 Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~ 1280 (1630)
T 1xi4_A 1218 YNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHA 1280 (1630)
T ss_pred HHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCH
Confidence 9985 58999999999999999999999876 3568899999999999999999886553 33456
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh--cCChHHHHHHHHHHHhcCC-----CCcchHHH
Q 007871 445 EHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRN--HQNVTLAEVVVEGLVELKA-----DDCGLYVL 515 (586)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~p-----~~~~~~~~ 515 (586)
..+..++..|.+.|.+++|+.+++.. +..| +...|..+...+.+ -++..++.++|..-....| .++..|..
T Consensus 1281 deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~e 1360 (1630)
T 1xi4_A 1281 DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 1360 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHH
Confidence 67789999999999999999999876 3333 45566556655554 4566777777776666555 67888999
Q ss_pred HHHHHHhcCCchHHHHHH
Q 007871 516 LSNIYADAGMWEHALRIR 533 (586)
Q Consensus 516 l~~~~~~~g~~~~A~~~~ 533 (586)
+...|.+.|+|+.|...+
T Consensus 1361 lv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1361 LVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHHHhcccHHHHHHHH
Confidence 999999999999998543
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.4e-18 Score=166.72 Aligned_cols=285 Identities=12% Similarity=0.052 Sum_probs=215.2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007871 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315 (586)
Q Consensus 239 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 315 (586)
.+...+..++..+...|++++|.++|+++.+ .+...+..++.++...|++++|...++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3556667777777777888888888877753 344556667777788888888888888887753 445667777777
Q ss_pred HHhccC-ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHH
Q 007871 316 ACAQVG-ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEE 391 (586)
Q Consensus 316 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 391 (586)
.+...| ++++|...++.+.+.. +.+...+..+..++...|++++|...++.+.+ .+...+..+...|...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 788888 7888888888887765 33556777888888888888888888887652 345667778888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhC-------CCCChHHHHHHHHHHhhcCCHHHHH
Q 007871 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG-------IEPKLEHYSCLVDLLSRAGELEQAL 464 (586)
Q Consensus 392 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~ 464 (586)
|...+++..+. .+.+...+..+...+...|++++|...++++.+... .+.+..++..++.+|...|++++|.
T Consensus 178 A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHh-CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 88888888774 244567788888888888888888888888876311 1344678888888888888988888
Q ss_pred HHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH-HhcCCc
Q 007871 465 NIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY-ADAGMW 526 (586)
Q Consensus 465 ~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 526 (586)
..+++. . .+.+...+..+...+...|++++|...++++.+..|+++..+..++.++ ...|+.
T Consensus 257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 888876 2 2235677888888888888999999999988888888888888888887 455543
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=1.3e-17 Score=169.17 Aligned_cols=287 Identities=13% Similarity=0.030 Sum_probs=220.5
Q ss_pred cCCHHHHHHHHHhCCC-CChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHh----CCCchHHH
Q 007871 223 KGDISSARILFEHMPI-KDLISWNSMIDGYAK----IGDLVAAQQLFNEMPE-RNVFSWSIMIDGYAQ----HGNPKEAL 292 (586)
Q Consensus 223 ~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~ 292 (586)
.+++++|...|+.... .++..+..+...|.. .+++++|.+.|++..+ .+...+..+...|.. .+++++|.
T Consensus 128 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 207 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISA 207 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 4455555555554432 255566666666666 6778888888877654 567777788888877 78899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHH
Q 007871 293 YLFREMLCQGVRPDVISVMGAISACAQ----VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK----CGSLDEARRI 364 (586)
Q Consensus 293 ~~~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~ 364 (586)
..|++..+.| +...+..+...+.. .++.++|...++...+.+ +...+..+..+|.. .++.++|.+.
T Consensus 208 ~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 208 QWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 9999888765 45566666666664 778889999998887765 45566677777777 7899999999
Q ss_pred HhccCC-CCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC---CHHHHHHHHHHhH
Q 007871 365 FYSMTK-KNVISYNVMIAGLGMN-----GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG---LATEGYRIFQSMK 435 (586)
Q Consensus 365 ~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~ 435 (586)
|+...+ .+...+..+...|... +++++|+.+|++..+.| +...+..+...|...| ++++|.++|++..
T Consensus 282 ~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 282 YRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 988764 4667778888888877 89999999999998865 4566777777776656 8899999999998
Q ss_pred HhhCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCC
Q 007871 436 RHCGIEPKLEHYSCLVDLLSR----AGELEQALNIVESMPMKPNLALWGTLLLACRN----HQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 436 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 507 (586)
+. .++..+..+...|.. .+++++|.+.|++.....++..+..+...|.. .+++++|..+|+++.+.+|
T Consensus 359 ~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 359 AK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 82 467788889999988 89999999999987444577888888888887 8999999999999999984
Q ss_pred C---CcchHHHHHHHHHh
Q 007871 508 D---DCGLYVLLSNIYAD 522 (586)
Q Consensus 508 ~---~~~~~~~l~~~~~~ 522 (586)
+ ++.....++.++..
T Consensus 435 ~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 435 NLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CHHHHHHHHHHHTTSCHH
T ss_pred CCcCCHHHHHHHHhcCHh
Confidence 4 77777777766554
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=5.9e-19 Score=172.16 Aligned_cols=277 Identities=11% Similarity=-0.027 Sum_probs=205.8
Q ss_pred hcCCHHHHHH-HHhhCCC--C-----ChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChh
Q 007871 253 KIGDLVAAQQ-LFNEMPE--R-----NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324 (586)
Q Consensus 253 ~~g~~~~A~~-~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~ 324 (586)
-.|++++|.. .|++... | +...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3456666666 6665442 1 23456666777777777777777777777653 445666667777777777777
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CHhHHHH---------------HHHHHHhc
Q 007871 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--K-NVISYNV---------------MIAGLGMN 386 (586)
Q Consensus 325 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~---------------l~~~~~~~ 386 (586)
+|...++.+.+.. +.+..++..+..+|...|++++|.+.++.+.. | +...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 7777777776664 33556677777777777777777777776542 1 1111110 23333488
Q ss_pred CChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHH
Q 007871 387 GFGEEALKCFAQMETEGIPK---DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463 (586)
Q Consensus 387 ~~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 463 (586)
|++++|...++++... .| +..++..+...+...|++++|...++++.. ..+.+..++..++.+|...|++++|
T Consensus 195 ~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 195 SLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999884 44 478899999999999999999999999988 3455788999999999999999999
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-----------cchHHHHHHHHHhcCCchHHH
Q 007871 464 LNIVESM-PMK-PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD-----------CGLYVLLSNIYADAGMWEHAL 530 (586)
Q Consensus 464 ~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~ 530 (586)
...++++ ... .+...+..+...+...|++++|...++++.+..|.+ +.+|..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999987 233 467889999999999999999999999999998887 789999999999999999999
Q ss_pred HHHHH
Q 007871 531 RIRKM 535 (586)
Q Consensus 531 ~~~~~ 535 (586)
.++++
T Consensus 351 ~~~~~ 355 (368)
T 1fch_A 351 AADAR 355 (368)
T ss_dssp HHHTT
T ss_pred HhHHH
Confidence 88764
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=3.7e-18 Score=163.64 Aligned_cols=264 Identities=11% Similarity=0.005 Sum_probs=230.3
Q ss_pred CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 007871 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349 (586)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (586)
.+...+..+...+...|++++|..+|+++.+.. +.+...+..++.++...|++++|...++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 456677788889999999999999999999874 4455666778888899999999999999998875 44677888899
Q ss_pred HHHHhcC-CHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHH
Q 007871 350 DMYMKCG-SLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425 (586)
Q Consensus 350 ~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 425 (586)
..+...| ++++|...|+.+.+ .+...|..+...+...|++++|+..++++.... +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998763 456789999999999999999999999998852 334567777899999999999
Q ss_pred HHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCChHH
Q 007871 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP-----------MKPNLALWGTLLLACRNHQNVTL 494 (586)
Q Consensus 426 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~p~~~~~~~l~~~~~~~~~~~~ 494 (586)
+|...++++.+ ..+.+...+..++..|...|++++|...++++- .+.....+..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999988 456678899999999999999999999998761 03346788899999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 495 AEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 495 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
|+..++++.+..|.++.++..++.+|.+.|++++|.+.++++.+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999988765
No 20
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=1.5e-15 Score=161.27 Aligned_cols=407 Identities=11% Similarity=0.098 Sum_probs=275.3
Q ss_pred CcchHHHHHHHHhcCCCchhHHHHHHHhHhCCC--CCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHH
Q 007871 76 NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGL--LVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGL 153 (586)
Q Consensus 76 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 153 (586)
++.--....++|...|.+.+|+++|++..-.+. .-+....+.++.+..+. +.....+....... .....+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHH
Confidence 334446677888888999999999988874321 12334555566655555 55555555554432 113346
Q ss_pred HHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHH
Q 007871 154 IGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILF 233 (586)
Q Consensus 154 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~ 233 (586)
...+...|.+++|..+|++.... ..+.+.++. ..|++++|.+++++.. +..+|..+..++ ...|++++|+..|
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~-~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAq-l~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVN-TSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQ-LQKGMVKEAIDSY 1128 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCH-HHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHH-HhCCCHHHHHHHH
Confidence 77778888888888888886522 222222322 6778888888888763 356677777787 8888888888888
Q ss_pred HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 007871 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE--RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311 (586)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~ 311 (586)
.+. .|...|..++.++.+.|++++|.+.+....+ ++....+.++.+|++.+++++...+ ++ .++...+.
T Consensus 1129 iKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~ 1199 (1630)
T 1xi4_A 1129 IKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQ 1199 (1630)
T ss_pred Hhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHH
Confidence 664 6777788888888888888888888876553 3333344578888888887753333 22 34556677
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHH
Q 007871 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391 (586)
Q Consensus 312 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 391 (586)
.+...|...|++++|..+|..+ ..|..++.+|.+.|++++|.+.+++. .+..+|.....+|...|++..
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHH
Confidence 7888888888888888888874 36788888888888888888888876 456778888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc--CCHHHHHHHHHh
Q 007871 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA--GELEQALNIVES 469 (586)
Q Consensus 392 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 469 (586)
|...... +..++..+..++..|...|.+++|+.+++.... --+.....|..+..+|.+- ++..++.+.|..
T Consensus 1269 A~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1269 AQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7776553 334556667788888888888888888877655 1233455666666666543 455566665543
Q ss_pred -CCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHh------------cCCCCcchHHHHHHHHHhcC
Q 007871 470 -MPMKP------NLALWGTLLLACRNHQNVTLAEVVVEGLVE------------LKADDCGLYVLLSNIYADAG 524 (586)
Q Consensus 470 -~~~~p------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~~p~~~~~~~~l~~~~~~~g 524 (586)
+.++| +...|..+...|.+.|+++.|....-+-.. ..+.|+..|+..+..|...+
T Consensus 1342 rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1342 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 33322 456677777788888888888733322211 14667777777777777666
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=3.6e-18 Score=162.72 Aligned_cols=285 Identities=13% Similarity=0.095 Sum_probs=126.9
Q ss_pred CCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHH
Q 007871 57 PNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHG 136 (586)
Q Consensus 57 ~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 136 (586)
+. |++++|.+++++++.|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++
T Consensus 15 ~~-~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HI-GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hc-cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 55 88999999999996664 8999999999999999999999652 577799999999999999999999888
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHH
Q 007871 137 EVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMI 216 (586)
Q Consensus 137 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll 216 (586)
..++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|..+|..+ ..|..+.
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA 155 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 155 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence 77773 45678899999999999999999988864 66679999999999999999999999987 4778888
Q ss_pred HHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHH
Q 007871 217 DGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296 (586)
Q Consensus 217 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 296 (586)
..+ .+.|+++.|.+.++++ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|.+++|..+++
T Consensus 156 ~~L-~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 156 STL-VHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HHH-HTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHH-HHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 888 8999999999999888 488899999999999999999988777655 344445568888999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcc--CChhHHHHHHHHHHHcCCCC------chhHHHHHHHHHHhcCCHHHHHHHHhc
Q 007871 297 EMLCQGVRPDVISVMGAISACAQV--GALDLGKWIHVFMKRSRITM------DMIVQTALIDMYMKCGSLDEARRIFYS 367 (586)
Q Consensus 297 ~m~~~g~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 367 (586)
...... +.....|+-+..++++- +++.+..+.|. .+.+++| +...|..++..|...++++.|....-.
T Consensus 232 ~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 232 AALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp HHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 887654 45566666666555543 33333333332 1112222 345666777777777777777665443
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=2.7e-16 Score=159.37 Aligned_cols=353 Identities=14% Similarity=0.013 Sum_probs=274.3
Q ss_pred chhHHHHHHHHHHh----cCChhHHHHHhccCCC-CChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHh
Q 007871 146 DVFVVNGLIGMYSK----CGHMGCARSVFEGSEI-KDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR 220 (586)
Q Consensus 146 ~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~ 220 (586)
+...+..|...|.. .+++++|...|++..+ .++.++..+...|... .
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g---------------------------~- 89 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNG---------------------------E- 89 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---------------------------S-
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC---------------------------C-
Confidence 45555555555655 5666666666654332 2444455555555440 0
Q ss_pred hccCCHHHHHHHHHhCCC-CChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHh----CCCchH
Q 007871 221 KKKGDISSARILFEHMPI-KDLISWNSMIDGYAK----IGDLVAAQQLFNEMPE-RNVFSWSIMIDGYAQ----HGNPKE 290 (586)
Q Consensus 221 ~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~ 290 (586)
...++.++|...|++... .++..+..|...|.. .+++++|...|++..+ .+...+..+...|.. .+++++
T Consensus 90 g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 169 (490)
T 2xm6_A 90 GVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVM 169 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 004445555555444432 356667777778887 7899999999998765 467788888888887 789999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHH
Q 007871 291 ALYLFREMLCQGVRPDVISVMGAISACAQ----VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK----CGSLDEAR 362 (586)
Q Consensus 291 A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 362 (586)
|+..|++..+.| +...+..+...+.. .++.++|...|+...+.+ +...+..+...|.. .+++++|.
T Consensus 170 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 170 AREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999999875 56777778888876 899999999999998876 55677778888886 78999999
Q ss_pred HHHhccCC-CCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc-----CCHHHHHHHHH
Q 007871 363 RIFYSMTK-KNVISYNVMIAGLGM----NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS-----GLATEGYRIFQ 432 (586)
Q Consensus 363 ~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~ 432 (586)
..|+...+ .+...+..+...|.. .+++++|+.+|++..+.| +...+..+...|... +++++|..+++
T Consensus 244 ~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 244 VLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 99998764 566778888888887 899999999999998764 456777777777776 89999999999
Q ss_pred HhHHhhCCCCChHHHHHHHHHHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 007871 433 SMKRHCGIEPKLEHYSCLVDLLSRAG---ELEQALNIVESMPMKPNLALWGTLLLACRN----HQNVTLAEVVVEGLVEL 505 (586)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 505 (586)
+..+. .+...+..+...|...| ++++|++.|++.....++..+..+...|.. .+++++|..+|+++.+.
T Consensus 321 ~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 321 KSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 99883 35567888888888766 889999999988544678888999999888 89999999999999886
Q ss_pred CCCCcchHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 007871 506 KADDCGLYVLLSNIYAD----AGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 506 ~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 541 (586)
+ ++.++..++.+|.. .+++++|...|++..+.+.
T Consensus 397 ~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 397 G--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred C--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 4 68899999999998 8999999999999988774
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1.7e-18 Score=164.87 Aligned_cols=286 Identities=12% Similarity=0.057 Sum_probs=100.3
Q ss_pred hcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCC
Q 007871 159 KCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI 238 (586)
Q Consensus 159 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~ 238 (586)
+.|++++|.+.++++..+ .+|..++.++.+.|++++|++.|.+. +|..+|..++..+ ...|++++|+..++...+
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~a-e~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAA-NTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHH
Confidence 445555566666555333 25556666666666666666665442 3444555555555 556666666665544432
Q ss_pred --CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007871 239 --KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISA 316 (586)
Q Consensus 239 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 316 (586)
+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|..++.+
T Consensus 90 ~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~ 157 (449)
T 1b89_A 90 KARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAST 157 (449)
T ss_dssp -------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHHHHHHH
T ss_pred hCccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHH
Confidence 234556666666666666666665554 255556666666666666666666666654 246666666
Q ss_pred HhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 007871 317 CAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF 396 (586)
Q Consensus 317 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 396 (586)
+.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++|+.++
T Consensus 158 L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lL 230 (449)
T 1b89_A 158 LVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITML 230 (449)
T ss_dssp HHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHH
Confidence 66666666666666655 255666666666666666666655555443 33333445666667777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCC------ChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 397 AQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP------KLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 397 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
+...... +-....|+.+...|++- ++++..+.++.-.++.+++| +...|..++-.|...++++.|....-+-
T Consensus 231 e~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 231 EAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 6665432 22334555555555443 22222222222222233443 3456666777777777777666655443
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=2.8e-16 Score=160.96 Aligned_cols=404 Identities=12% Similarity=0.054 Sum_probs=253.6
Q ss_pred CcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC--CChhhHHHHHHHH
Q 007871 111 DNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI--KDLVSWNLVLRGF 188 (586)
Q Consensus 111 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~ 188 (586)
+...|..++.. ...|+++.|..+++.+.+. .+.+...|..++..+.+.|++++|..+|++... |+...|...+...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 45566666663 5567777777777777663 234555677777777777777777777766543 3455555555322
Q ss_pred -HhCCChhHHHH----HHhhCC-----C-CChhHHHHHHHHHhhc---------cCCHHHHHHHHHhCCC-CCh---hHH
Q 007871 189 -VECGEMGKARE----VFDEMP-----Q-KDAISWSIMIDGYRKK---------KGDISSARILFEHMPI-KDL---ISW 244 (586)
Q Consensus 189 -~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~ll~~~~~~---------~g~~~~a~~~~~~~~~-~~~---~~~ 244 (586)
...|+.+.|.+ +|+... . ++...|...+... .. .|+++.|..+|++... |.. ..|
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFL-KGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH-HHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH-hcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 23455555443 343322 1 1223333333322 11 3444444444444332 110 111
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHH------HCC---CCCCH--------
Q 007871 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML------CQG---VRPDV-------- 307 (586)
Q Consensus 245 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~------~~g---~~~~~-------- 307 (586)
..........|. ..+.. ++. ...+++..|..++.+.. +.. ++|+.
T Consensus 169 ~~~~~~e~~~~~-~~~~~---------------~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKK---------------MIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHHHHHCH-HHHHH---------------HHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHHhhch-hHHHH---------------HHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 111110000000 00000 000 12345666666665532 111 24431
Q ss_pred HHHHHHHHHHhc----cCCh----hHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHH
Q 007871 308 ISVMGAISACAQ----VGAL----DLGKWIHVFMKRSRITMDMIVQTALIDMYMK-------CGSLD-------EARRIF 365 (586)
Q Consensus 308 ~~~~~l~~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~ 365 (586)
..|...+..... .++. ..+...|+.+.... +.+...|..++..+.+ .|+++ +|..+|
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 334433332221 1232 36777888887763 4567778888887775 68876 899999
Q ss_pred hccCC---C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhC
Q 007871 366 YSMTK---K-NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD-D-LIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439 (586)
Q Consensus 366 ~~~~~---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 439 (586)
++..+ | +...|..++..+.+.|++++|..+|+++.+ ..|+ . ..|..++..+.+.|++++|..+|++..+.
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-- 385 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-- 385 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 98763 3 577899999999999999999999999998 4564 3 47888888888899999999999999872
Q ss_pred CCCChHHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc----h
Q 007871 440 IEPKLEHYSCLVDL-LSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG----L 512 (586)
Q Consensus 440 ~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~ 512 (586)
.+.+...+...+.. +...|+.++|..+|++. ...| ++..|..++..+...|+.++|..+|++++...|.++. +
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 33344444433332 34689999999999977 2334 6788999999999999999999999999998877665 7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 513 YVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 513 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
|...+......|+.+.+..+++++.+.-
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8888888889999999999999987643
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=8.1e-17 Score=150.46 Aligned_cols=270 Identities=11% Similarity=0.017 Sum_probs=204.3
Q ss_pred HHHhcCCHHHHHHHHhhCCCCC----hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhH
Q 007871 250 GYAKIGDLVAAQQLFNEMPERN----VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325 (586)
Q Consensus 250 ~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~ 325 (586)
-....|+++.|+..++.....+ ......+..+|...|+++.|+..++. .-+|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3455677777777766655422 22344556777777777777766544 135566677777777777777888
Q ss_pred HHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 007871 326 GKWIHVFMKRSRI-TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGI 404 (586)
Q Consensus 326 a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 404 (586)
|...++.+...+. +.+...+..+..++...|++++|.+.++. ..+...+..++..+.+.|++++|.+.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 8888887777654 33455667777889999999999999988 567888999999999999999999999999984
Q ss_pred CCCHHHH---HHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 007871 405 PKDDLIF---LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALW 479 (586)
Q Consensus 405 ~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 479 (586)
.|+.... ..++..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|.+.++++ ...| ++.++
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4654311 12334445669999999999999993 6778899999999999999999999999987 3344 78889
Q ss_pred HHHHHHHHhcCChHH-HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 007871 480 GTLLLACRNHQNVTL-AEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 480 ~~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 533 (586)
..++..+...|+.++ +.++++++.+.+|+++.+.. ...+.+.++++..-|
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 999999999999876 67899999999999996654 456666666665544
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=4.9e-18 Score=165.49 Aligned_cols=261 Identities=11% Similarity=-0.047 Sum_probs=204.4
Q ss_pred ChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007871 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350 (586)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 350 (586)
+...+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|...|+.+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34457777778888888888888888887764 4566777788888888888888888888877764 345667778888
Q ss_pred HHHhcCCHHHHHHHHhccCC--CC-----------HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 007871 351 MYMKCGSLDEARRIFYSMTK--KN-----------VISYNVMIAGLGMNGFGEEALKCFAQMETEGIP-KDDLIFLGVLI 416 (586)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~~--~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~ 416 (586)
+|...|++++|...|+++.+ |+ ...+..+...+...|++++|...++++...... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 88888888888888877653 11 223345578889999999999999999885211 15788999999
Q ss_pred HhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 007871 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTL 494 (586)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 494 (586)
.+...|++++|...++++.+ ..+.+..++..++.+|...|++++|.+.++++ ...| +...+..+..+|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999988 35567889999999999999999999999987 3334 58889999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCCchHHHHHHHH
Q 007871 495 AEVVVEGLVELKAD------------DCGLYVLLSNIYADAGMWEHALRIRKM 535 (586)
Q Consensus 495 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 535 (586)
|...++++.+..|. +..+|..++.++...|+.+.+....++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998876 467899999999999999988877654
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=2.3e-17 Score=157.93 Aligned_cols=257 Identities=9% Similarity=-0.071 Sum_probs=177.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 007871 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354 (586)
Q Consensus 275 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 354 (586)
+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+..+|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3334444444555555555555544432 2233444444444455555555555555444442 2233444445555555
Q ss_pred cCCHHHHHHHHhccCC--C-CHhHHHH-------------H-HH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007871 355 CGSLDEARRIFYSMTK--K-NVISYNV-------------M-IA-GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416 (586)
Q Consensus 355 ~g~~~~a~~~~~~~~~--~-~~~~~~~-------------l-~~-~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 416 (586)
.|++++|.+.++.+.+ | +...+.. + .. .+...|++++|...++++.... +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 5555555555544431 1 1111111 1 22 3677889999999999998852 446788899999
Q ss_pred HhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHH
Q 007871 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PM-KPNLALWGTLLLACRNHQNVTL 494 (586)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~ 494 (586)
.+...|++++|...++++.+ ..+.+...+..++.+|...|++++|...++++ .. +.+...+..+...+...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999988 34567888999999999999999999999887 22 3467888999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 495 AEVVVEGLVELKAD------------DCGLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 495 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
|...++++.+..|. ++..+..++.++.+.|++++|..++++.
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999998 7889999999999999999999988654
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=2.8e-15 Score=153.55 Aligned_cols=408 Identities=12% Similarity=0.081 Sum_probs=288.7
Q ss_pred CCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHH
Q 007871 73 YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNG 152 (586)
Q Consensus 73 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 152 (586)
.+-+...|..++.. .+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|..+|+..++.. |++..|..
T Consensus 9 ~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~ 84 (530)
T 2ooe_A 9 NPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC 84 (530)
T ss_dssp CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence 34577789999984 78899999999999999862 3356678899999999999999999999999854 67778877
Q ss_pred HHHHH-HhcCChhHHHH----HhccCC------CCChhhHHHHHHHHHh---------CCChhHHHHHHhhCC-CCCh--
Q 007871 153 LIGMY-SKCGHMGCARS----VFEGSE------IKDLVSWNLVLRGFVE---------CGEMGKAREVFDEMP-QKDA-- 209 (586)
Q Consensus 153 li~~~-~~~g~~~~a~~----~~~~~~------~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~-~~~~-- 209 (586)
++... ...|+.+.|.+ +|++.. ..+...|...+..... .|+++.|..+|++.. .|..
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 77533 45677777665 555431 2356778888776655 689999999999987 4432
Q ss_pred -hHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh-------CC------CCC----
Q 007871 210 -ISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNE-------MP------ERN---- 271 (586)
Q Consensus 210 -~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~------~~~---- 271 (586)
..|....... ...|. ..+..++.. +.+++..|..++.. +. .|+
T Consensus 165 ~~~~~~~~~~e-~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 165 EQLWRDYNKYE-EGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHH-HHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHHH-Hhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 2222211111 11111 111111111 12334444433332 11 122
Q ss_pred ----hhHHHHHHHHHHhC----CCc----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------cCChh-------H
Q 007871 272 ----VFSWSIMIDGYAQH----GNP----KEALYLFREMLCQGVRPDVISVMGAISACAQ-------VGALD-------L 325 (586)
Q Consensus 272 ----~~~~~~l~~~~~~~----~~~----~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~-------~~~~~-------~ 325 (586)
...|...+...... ++. +++..+|++++... +-+...|......+.. .|+++ +
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 304 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence 24555555433322 233 37788899888762 4567777777777664 68887 8
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CH-hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007871 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--K-NV-ISYNVMIAGLGMNGFGEEALKCFAQMET 401 (586)
Q Consensus 326 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 401 (586)
|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|+.++|..+|++..+
T Consensus 305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 899999988633345678888999999999999999999998763 4 33 4788888888999999999999999987
Q ss_pred CCCCCC-HHHHHHHHHH-hhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-
Q 007871 402 EGIPKD-DLIFLGVLIA-CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM----PMKP- 474 (586)
Q Consensus 402 ~g~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p- 474 (586)
. .|+ ...+...... +...|++++|..+|+...+. .+.+...|..++..+.+.|+.++|..+|++. +..|
T Consensus 385 ~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 385 D--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp C--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred c--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 4 333 3333332222 33589999999999999884 3557889999999999999999999999987 2233
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007871 475 -NLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508 (586)
Q Consensus 475 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 508 (586)
....|...+......|+.+.+..+++++.+..|.
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 2458888888888999999999999999998874
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=7.1e-17 Score=157.35 Aligned_cols=255 Identities=14% Similarity=0.074 Sum_probs=148.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007871 245 NSMIDGYAKIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321 (586)
Q Consensus 245 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 321 (586)
..+...+.+.|++++|...|+++.+ .+..+|..+..++...|++++|...|+++.+.. +.+..++..+..++...|
T Consensus 68 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 146 (368)
T 1fch_A 68 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 146 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 3333344444444444444443321 223344444444444444444444444444432 223344444444444444
Q ss_pred ChhHHHHHHHHHHHcCCCCchhH---------------HHHHHHHHHhcCCHHHHHHHHhccCC--C---CHhHHHHHHH
Q 007871 322 ALDLGKWIHVFMKRSRITMDMIV---------------QTALIDMYMKCGSLDEARRIFYSMTK--K---NVISYNVMIA 381 (586)
Q Consensus 322 ~~~~a~~~~~~~~~~~~~~~~~~---------------~~~l~~~~~~~g~~~~a~~~~~~~~~--~---~~~~~~~l~~ 381 (586)
++++|...++.+.+......... +..+...+ ..|++++|...|+.+.+ | +...+..+..
T Consensus 147 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~ 225 (368)
T 1fch_A 147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 225 (368)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHH
Confidence 44444444444444321111110 01122233 66777777777776652 2 4667777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHH
Q 007871 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461 (586)
Q Consensus 382 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 461 (586)
.|...|++++|+..++++... .+.+...+..+...+...|++++|...++++.+ ..+.+...+..++.+|.+.|+++
T Consensus 226 ~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 226 LFNLSGEYDKAVDCFTAALSV-RPNDYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHH
Confidence 788888888888888877764 233456777777788888888888888888777 23456677778888888888888
Q ss_pred HHHHHHHhC-CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 462 QALNIVESM-PMKP------------NLALWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 462 ~A~~~~~~~-~~~p------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
+|...++++ ...| ....|..+..++...|++++|..++++.++
T Consensus 303 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 888887766 1111 257778888888888888888887776554
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=1.7e-16 Score=148.23 Aligned_cols=246 Identities=10% Similarity=-0.011 Sum_probs=201.5
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 007871 279 IDGYAQHGNPKEALYLFREMLCQGVRPDV--ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356 (586)
Q Consensus 279 ~~~~~~~~~~~~A~~~~~~m~~~g~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 356 (586)
+.-....|+++.|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+...+..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34556789999999998876443 4443 3556678899999999999876644 23567778888999999999
Q ss_pred CHHHHHHHHhccC----CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 007871 357 SLDEARRIFYSMT----KK-NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431 (586)
Q Consensus 357 ~~~~a~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (586)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 566777888999999999999999987 467788999999999999999999999
Q ss_pred HHhHHhhCCCCChH-H--HHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007871 432 QSMKRHCGIEPKLE-H--YSCLVDLLSRAGELEQALNIVESM--PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506 (586)
Q Consensus 432 ~~~~~~~~~~~~~~-~--~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 506 (586)
+.+.+. .|+.. . ...++..+...|++++|..+|+++ ..++++..++.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999883 24432 1 122334455669999999999988 234578899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchH-HHHHHHHHHhC
Q 007871 507 ADDCGLYVLLSNIYADAGMWEH-ALRIRKMMRKR 539 (586)
Q Consensus 507 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~ 539 (586)
|+++.++..++.++...|++++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999987 57899988764
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.1e-15 Score=154.36 Aligned_cols=357 Identities=10% Similarity=-0.067 Sum_probs=208.0
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHhhCC-----------CC-ChhHHHHHHHHHhhccCCHHHHHHHHHhCC-------
Q 007871 177 DLVSWNLVLRGFVECGEMGKAREVFDEMP-----------QK-DAISWSIMIDGYRKKKGDISSARILFEHMP------- 237 (586)
Q Consensus 177 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~-~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~------- 237 (586)
....||.+...+...|++++|++.|++.. .| ...+|..+...+ ...|++++|...+++..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y-~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVY-YHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHhHhcc
Confidence 35678999999999999999999987754 12 234566666667 77888888877766543
Q ss_pred C----CChhHHHHHHHHHHhc--CCHHHHHHHHhhCCC--C-ChhHHHHHHHH---HHhCCCchHHHHHHHHHHHCCCCC
Q 007871 238 I----KDLISWNSMIDGYAKI--GDLVAAQQLFNEMPE--R-NVFSWSIMIDG---YAQHGNPKEALYLFREMLCQGVRP 305 (586)
Q Consensus 238 ~----~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~A~~~~~~m~~~g~~~ 305 (586)
. ....++..+..++... +++++|...|++..+ | ++..+..+..+ +...++.++|++.+++..+.. +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 1 1334555555555443 457788888877653 3 34444444433 344566777777777777653 33
Q ss_pred CHHHHHHHHHHHh----ccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHH
Q 007871 306 DVISVMGAISACA----QVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNV 378 (586)
Q Consensus 306 ~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ 378 (586)
+...+..+...+. ..++.++|...++...... +.+..++..+...|...|++++|...+++..+ .+..++..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 4445544444433 3356677777777776664 34556677777778888888888887776652 34556666
Q ss_pred HHHHHHhc-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhC
Q 007871 379 MIAGLGMN-------------------GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439 (586)
Q Consensus 379 l~~~~~~~-------------------~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 439 (586)
+...|... +.++.|...+++..... +.+..++..+...+...|++++|...|++..+. .
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~ 364 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-E 364 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-C
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-C
Confidence 66665432 22455666666666531 222345666777777777777777777777662 2
Q ss_pred CCCCh--HHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHH
Q 007871 440 IEPKL--EHYSCLVDL-LSRAGELEQALNIVESM-PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515 (586)
Q Consensus 440 ~~~~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 515 (586)
..+.. ..+..+... +...|++++|++.+++. ...|+...... ....+..++++.++.+|.++.++..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 22211 122233322 33567777777777665 34444322221 2234456667777788999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCCccCCCe
Q 007871 516 LSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547 (586)
Q Consensus 516 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 547 (586)
++.+|...|++++|++.|++..+.+.......
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp HHHHHHHHHHCC--------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 99999999999999999999988765543333
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=2.2e-16 Score=153.68 Aligned_cols=232 Identities=10% Similarity=-0.011 Sum_probs=195.2
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHH
Q 007871 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAG 382 (586)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~ 382 (586)
+...+..+...+.+.|++++|...|+.+.+.. +.+..++..+..+|...|++++|...|+++. ..+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457788889999999999999999999876 4567889999999999999999999999876 3467899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHH
Q 007871 383 LGMNGFGEEALKCFAQMETEGIPKDD-----------LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451 (586)
Q Consensus 383 ~~~~~~~~~A~~~~~~m~~~g~~p~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 451 (586)
|...|++++|+..++++.+. .|+. ..+..+...+...|++++|..+++++.+.....++..++..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999873 3432 2233457788999999999999999998422212688999999
Q ss_pred HHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH
Q 007871 452 DLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529 (586)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 529 (586)
.+|...|++++|.+.++++ . .+.+...|..+..+|...|++++|+..++++++..|.++.++..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 2 2346889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 007871 530 LRIRKMMRKRK 540 (586)
Q Consensus 530 ~~~~~~m~~~~ 540 (586)
...++++.+..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999997643
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=2.1e-16 Score=151.16 Aligned_cols=261 Identities=10% Similarity=-0.006 Sum_probs=186.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007871 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACA 318 (586)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 318 (586)
..+..+...+...|++++|...|+++.+ .+..++..+..++...|++++|...++++.+.. +.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 3455666667777777777777776643 345666677777777777777777777777653 445666777777777
Q ss_pred ccCChhHHHHHHHHHHHcCCCCchhHHHHH--------------HH-HHHhcCCHHHHHHHHhccC---CCCHhHHHHHH
Q 007871 319 QVGALDLGKWIHVFMKRSRITMDMIVQTAL--------------ID-MYMKCGSLDEARRIFYSMT---KKNVISYNVMI 380 (586)
Q Consensus 319 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~ 380 (586)
..|++++|...++.+.+.... +...+..+ .. .+...|++++|...++++. ..+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 777777777777777665422 22222222 22 3667778888888887765 24667788888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCH
Q 007871 381 AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460 (586)
Q Consensus 381 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 460 (586)
..+...|++++|...++++... .+.+...+..+...+...|++++|...++++.+ ..+.+...+..++.+|...|++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL-RPDDAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhccH
Confidence 8888888999999888888774 234567788888888888999999999988877 2455677888888889999999
Q ss_pred HHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007871 461 EQALNIVESM-PMKP-------------NLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 461 ~~A~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 507 (586)
++|.+.++++ ...| +...+..+..++...|++++|..+++++++..|
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 9998888776 1222 366778888888899999999888887666433
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=2.9e-15 Score=151.36 Aligned_cols=379 Identities=8% Similarity=-0.073 Sum_probs=202.2
Q ss_pred CCcccHHHHHHHHhccCCchHHHHHHHHHHHh-----C--CCC-chhHHHHHHHHHHhcCChhHHHHHhccCC-------
Q 007871 110 VDNYTYPFVLKACGVLMGLVEGTEIHGEVVKM-----G--FLC-DVFVVNGLIGMYSKCGHMGCARSVFEGSE------- 174 (586)
Q Consensus 110 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~------- 174 (586)
.....|+.+..++...|++++|.+.+++..+. + ..| ...+|+.+..+|...|++++|...+++..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34557888888888899999999988887653 1 122 34567788888888888888887775432
Q ss_pred C----CChhhHHHHHHHHHhC--CChhHHHHHHhhCC--CCChhH-HHHHHHHH--hhccCCHHHHHHHHHhCC---CCC
Q 007871 175 I----KDLVSWNLVLRGFVEC--GEMGKAREVFDEMP--QKDAIS-WSIMIDGY--RKKKGDISSARILFEHMP---IKD 240 (586)
Q Consensus 175 ~----~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~--~~~~~~-~~~ll~~~--~~~~g~~~~a~~~~~~~~---~~~ 240 (586)
. ....++.....++... +++++|+..|++.. .|+... +..+...+ ....++.++|++.+++.. +.+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 1 1234555555555443 45777888877766 444332 22222221 134455566666655443 334
Q ss_pred hhHHHHHHHHHHh----cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 007871 241 LISWNSMIDGYAK----IGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313 (586)
Q Consensus 241 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l 313 (586)
..++..+...+.. .|++++|.+.+++... .+..++..+...+...|++++|...+++..+.. +-+..++..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 4555544444433 3445566666655432 344556666666666666666666666666542 2233444444
Q ss_pred HHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChH
Q 007871 314 ISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGE 390 (586)
Q Consensus 314 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 390 (586)
..++...+... .... ...........+.++.|...++... ..+...+..+...|...|+++
T Consensus 288 g~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 288 GCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 33332111000 0000 0000000111223566777776654 345667888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHH-HhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 007871 391 EALKCFAQMETEGIPKDDL--IFLGVLI-ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467 (586)
Q Consensus 391 ~A~~~~~~m~~~g~~p~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 467 (586)
+|+..|++..+....|... .+..+.. .....|++++|+..|++..+ +.|+........ ..+..++
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~ 419 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHH
Confidence 9999999998853332221 2233332 24578999999999999877 344433222222 2233333
Q ss_pred HhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 468 ESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 468 ~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
++. . .+.++.+|..+...+...|++++|++.|+++++.+|.+|.+...++
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 332 1 2346778999999999999999999999999999999887776554
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.4e-15 Score=137.30 Aligned_cols=216 Identities=9% Similarity=-0.041 Sum_probs=155.5
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C----C----HhHHHHHH
Q 007871 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--K----N----VISYNVMI 380 (586)
Q Consensus 311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~----~----~~~~~~l~ 380 (586)
..+...+...|++++|...++.+.+.. .+...+..+..+|...|++++|...++...+ | + ...+..+.
T Consensus 9 ~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 9 KAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 333344444444444444444444443 3344444455555555555555555544431 1 1 45677777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCH
Q 007871 381 AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460 (586)
Q Consensus 381 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 460 (586)
..+...|++++|...+++... ..|+.. .+...|++++|...++.+.. ..+.+...+..++..+...|++
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCH
Confidence 888888888888888888877 455533 35556788899999988877 3445677888889999999999
Q ss_pred HHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 461 EQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 461 ~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
++|...++++ . .+.+...+..+...+...|++++|+..++++++..|.++..+..++.+|...|++++|...+++..+
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999877 2 2346788888888899999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 007871 539 R 539 (586)
Q Consensus 539 ~ 539 (586)
.
T Consensus 236 ~ 236 (258)
T 3uq3_A 236 K 236 (258)
T ss_dssp H
T ss_pred h
Confidence 4
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=1.9e-15 Score=134.87 Aligned_cols=194 Identities=13% Similarity=-0.024 Sum_probs=156.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 007871 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGV 414 (586)
Q Consensus 339 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l 414 (586)
+++...+..+...+...|++++|...|+...+ .+...+..+...+.+.|++++|+..+++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45666777888888899999999999987653 46678888899999999999999999999884 45 45788888
Q ss_pred HHHhhcc-----------CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 007871 415 LIACSHS-----------GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM--PMKPNLALWGT 481 (586)
Q Consensus 415 ~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 481 (586)
..++... |++++|...+++..+ ..|.+...+..++.+|...|++++|+..|++. .. .++..+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHH
Confidence 8888888 999999999999988 34557888999999999999999999999887 23 78889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
+..++...|++++|+..++++++.+|+++.++..++.++...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988753
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.8e-15 Score=137.93 Aligned_cols=234 Identities=10% Similarity=-0.051 Sum_probs=184.6
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCC--c----hhHHH
Q 007871 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM--D----MIVQT 346 (586)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~ 346 (586)
..|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...++.+.+..... + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456667777778888888888888877765 666777777778888888888888887776653211 1 46777
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCC
Q 007871 347 ALIDMYMKCGSLDEARRIFYSMTK--KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD-DLIFLGVLIACSHSGL 423 (586)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 423 (586)
.+..+|...|++++|...|+++.+ |+. ..+...|++++|...++++... .|+ ...+..+...+...|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcC
Confidence 888888888888888888887763 342 3466678889999999998883 444 4678888888999999
Q ss_pred HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007871 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PM-KPNLALWGTLLLACRNHQNVTLAEVVVEG 501 (586)
Q Consensus 424 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 501 (586)
+++|...++++.+ ..+.+..++..++.+|...|++++|...++++ .. +.+...+..+...+...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999988 34567888999999999999999999999887 22 34678888899999999999999999999
Q ss_pred HHhcC------CCCcchHHHHHHH
Q 007871 502 LVELK------ADDCGLYVLLSNI 519 (586)
Q Consensus 502 ~~~~~------p~~~~~~~~l~~~ 519 (586)
+.+.. |.+..++..+..+
T Consensus 233 a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 233 ARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHhChhhcCCCchHHHHHHHHHh
Confidence 99988 8877777766543
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=1.9e-14 Score=133.60 Aligned_cols=244 Identities=10% Similarity=-0.055 Sum_probs=142.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHh
Q 007871 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD--MIVQTALIDMYMK 354 (586)
Q Consensus 277 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 354 (586)
.....+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.+..++ ...+..+..+|..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 34445555555566666655555542 22233445555555555666666665555555221111 1235556666666
Q ss_pred cCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 007871 355 CGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431 (586)
Q Consensus 355 ~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (586)
.|++++|.+.|+... ..+...+..+...|...|++++|+..+++..+. .+.+...+..+...+...+++++|...+
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666554 234456666666666666666666666666553 2223445555552333344777777777
Q ss_pred HHhHHhhCCCCChHHHHHHHHHHhhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHHhcCChHHHHHH
Q 007871 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGE---LEQALNIVESM----PMKPN------LALWGTLLLACRNHQNVTLAEVV 498 (586)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~~~~~~~~a~~~ 498 (586)
+++.+ ..+.+...+..++.++...|+ +++|...++++ ...|+ ...+..+...|...|++++|...
T Consensus 166 ~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 166 VKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77766 233445666666777766666 55566665554 11132 24667778888899999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcC
Q 007871 499 VEGLVELKADDCGLYVLLSNIYADAG 524 (586)
Q Consensus 499 ~~~~~~~~p~~~~~~~~l~~~~~~~g 524 (586)
++++.+.+|+++.++..+..+....+
T Consensus 244 ~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 244 WKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99999999999998888877665544
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=2.1e-14 Score=133.43 Aligned_cols=241 Identities=9% Similarity=-0.087 Sum_probs=185.9
Q ss_pred hCCCchHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 007871 284 QHGNPKEALYLFREMLCQGVR---PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360 (586)
Q Consensus 284 ~~~~~~~A~~~~~~m~~~g~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 360 (586)
..|++++|+..++++.+.... .+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 456788888888888875321 234567777778888888888888888887775 3466778888888889999999
Q ss_pred HHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHh
Q 007871 361 ARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRH 437 (586)
Q Consensus 361 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 437 (586)
|...|+++.+ .+...+..+...|...|++++|...++++.+ ..|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9998887763 4677888999999999999999999999988 4555554455555567779999999999888873
Q ss_pred hCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc
Q 007871 438 CGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP-MKPN-----LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511 (586)
Q Consensus 438 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 511 (586)
.+++...+. ++..+...++.++|.+.+++.- ..|. ...+..+...+...|++++|...++++.+.+|.+..
T Consensus 174 --~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 445555444 7777888889999999998773 2232 577888888999999999999999999999988765
Q ss_pred hHHHHHHHHHhcCCchHHHHHH
Q 007871 512 LYVLLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 512 ~~~~l~~~~~~~g~~~~A~~~~ 533 (586)
.+ +.++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 66788889999988776
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=6.8e-15 Score=146.75 Aligned_cols=374 Identities=8% Similarity=-0.078 Sum_probs=198.9
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh---hHHHHHhccCCCCChhhHHHHHHHHHhCC-
Q 007871 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHM---GCARSVFEGSEIKDLVSWNLVLRGFVECG- 192 (586)
Q Consensus 117 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~g- 192 (586)
.+...+.+.|++++|.++|++..+.| +...+..|...|...|+. ++|...|++..+.++.++..+...+...|
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 35566678899999999999998876 344555566666777777 88888888877667777777777565555
Q ss_pred ----ChhHHHHHHhhCCCC-ChhHHHHHHHHHhhccCCHH---HHHHHHHhCC-CCChhHHHHHHHHHHhcCC----HHH
Q 007871 193 ----EMGKAREVFDEMPQK-DAISWSIMIDGYRKKKGDIS---SARILFEHMP-IKDLISWNSMIDGYAKIGD----LVA 259 (586)
Q Consensus 193 ----~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~~g~~~---~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~----~~~ 259 (586)
++++|+..|++...+ +...+..+...+ ...+..+ .+.+.+.... ..++.....+...|...+. .+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y-~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGNTLIPLAMLY-LQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHH-HHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHH
Confidence 667777777766522 222333333333 2222211 1222222211 1133334444444444432 222
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---ChhHHHHHHHHHHHc
Q 007871 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG---ALDLGKWIHVFMKRS 336 (586)
Q Consensus 260 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 336 (586)
+..++......++. .+..+...+...| +.++|...|+...+.
T Consensus 164 a~~~~~~a~~~~~~-----------------------------------a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~ 208 (452)
T 3e4b_A 164 VERICKAALNTTDI-----------------------------------CYVELATVYQKKQQPEQQAELLKQMEAGVSR 208 (452)
T ss_dssp HHHHHHHHTTTCTT-----------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHH-----------------------------------HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC
Confidence 22233333333333 4444444444455 555555555555555
Q ss_pred CCCCchhHHHHHHHHHHhc----CCHHHHHHHHhccCCCCHhHHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCHH
Q 007871 337 RITMDMIVQTALIDMYMKC----GSLDEARRIFYSMTKKNVISYNVMIAG-L--GMNGFGEEALKCFAQMETEGIPKDDL 409 (586)
Q Consensus 337 ~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~m~~~g~~p~~~ 409 (586)
| +++...+..+..+|... +++++|...|+.....++..+..+... + ...+++++|+.+|++..+.| +..
T Consensus 209 g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~ 284 (452)
T 3e4b_A 209 G-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPR 284 (452)
T ss_dssp T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHH
T ss_pred C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 4 22333333444444333 566667776666553345556666555 3 45778888888888887765 556
Q ss_pred HHHHHHHHhhccC-----CHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHH
Q 007871 410 IFLGVLIACSHSG-----LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR----AGELEQALNIVESMPMKPNLALWG 480 (586)
Q Consensus 410 ~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~ 480 (586)
.+..+...|. .| ++++|..+|++.. +-+...+..|...|.. ..++++|...|++.....++....
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~ 358 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADF 358 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHH
Confidence 6666666665 44 8888888888764 3466777777777765 348888888888774344455555
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 481 TLLLACRN----HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 481 ~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.+...|.. ..|..+|..+|+++.+.++.........+......++..+|..+.++..+.
T Consensus 359 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 359 AIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 66666553 458889999999988877554433333332233445666777777776543
No 41
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=6.6e-16 Score=158.97 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=111.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 007871 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMP-------ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312 (586)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ 312 (586)
-..+|+++|++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34689999999999999999999997753 48999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCh-hHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007871 313 AISACAQVGAL-DLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364 (586)
Q Consensus 313 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 364 (586)
+|.++++.|+. +.|..++++|.+.|+.||..+|++++....+.+-++.+.++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 99999999985 78999999999999999999999998877665444443333
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=5.8e-13 Score=123.57 Aligned_cols=225 Identities=9% Similarity=-0.121 Sum_probs=127.7
Q ss_pred ChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHHHcCCCCchhHHH
Q 007871 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ----VGALDLGKWIHVFMKRSRITMDMIVQT 346 (586)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 346 (586)
+..++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...|+...+.+ +..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~--- 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN--- 75 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH---
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH---
Confidence 4455566666666666666666666666652 233444455555555 555555555555555443 333
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc--
Q 007871 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM----NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH-- 420 (586)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-- 420 (586)
.+..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 76 ----------------------------a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 76 ----------------------------GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp ----------------------------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred ----------------------------HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 44444444444 555555555555555543 44455555555555
Q ss_pred --cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 007871 421 --SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR----AGELEQALNIVESMPMKPNLALWGTLLLACRN----HQ 490 (586)
Q Consensus 421 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~ 490 (586)
.+++++|...+++..+. + +...+..+...|.. .+++++|.+.+++.....+...+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 56666666666665551 2 34455555555555 56666666666554222344555555556666 66
Q ss_pred ChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 007871 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYAD----AGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 491 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 541 (586)
++++|+.+++++.+.+| +..+..++.+|.. .|++++|...+++..+.|.
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 66666666666666544 5556666666666 6666666666666665543
No 43
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=5.1e-16 Score=159.78 Aligned_cols=130 Identities=12% Similarity=0.061 Sum_probs=117.2
Q ss_pred ChhhHhHHHHHhccCCCCChHHHHHHHhcc-------CCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccH
Q 007871 43 EPFTLSQLLMSLTSPNTLNMDQAERLFNQI-------YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTY 115 (586)
Q Consensus 43 ~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 115 (586)
-..+|+.+|. .|++. |++++|.++|++| ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 126 ~~~TynaLId-glcK~-G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 126 QQQRLLAFFK-CCLLT-DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHH-HHHHH-TCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHH-HHHhC-CCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3457999999 99999 9999999999775 4799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCc-hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC
Q 007871 116 PFVLKACGVLMGL-VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174 (586)
Q Consensus 116 ~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 174 (586)
+++|.++++.|+. +.|.++|++|.+.|+.||..+|+.++..+.+.+-++.+.++.....
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence 9999999999985 7899999999999999999999999988888776666666654443
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.59 E-value=1.4e-13 Score=132.84 Aligned_cols=246 Identities=10% Similarity=0.006 Sum_probs=186.6
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-hhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007871 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA-LDLGKWIHVFMKRSRITMDMIVQTALID 350 (586)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 350 (586)
...|..+...+...|++++|+..++++++.. +-+...|..+..++...|+ +++|...++.+++.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3556677777777888888888888877753 4456667777777777775 888888888777765 335667777777
Q ss_pred HHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhc-cCCHH
Q 007871 351 MYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSH-SGLAT 425 (586)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~-~g~~~ 425 (586)
++...|++++|+..|+++. ..+...|..+..++...|++++|+..++++++. .| +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 8888888888888887766 346678888888888889999999999988884 44 55778888888877 56556
Q ss_pred HH-----HHHHHHhHHhhCCCCChHHHHHHHHHHhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-------
Q 007871 426 EG-----YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG--ELEQALNIVESMPMKP-NLALWGTLLLACRNHQ------- 490 (586)
Q Consensus 426 ~A-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~------- 490 (586)
+| +..+++... -.+.+...|..+..++...| ++++|++.+.++...| +...+..++..|...|
T Consensus 253 eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 66 477888877 34456778888888888888 6888888888774444 5667777877777763
Q ss_pred -C-hHHHHHHHHHH-HhcCCCCcchHHHHHHHHHhc
Q 007871 491 -N-VTLAEVVVEGL-VELKADDCGLYVLLSNIYADA 523 (586)
Q Consensus 491 -~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 523 (586)
+ +++|+.+++++ .+.+|.....|..++..+...
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 899999999999888776543
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=9.7e-13 Score=122.06 Aligned_cols=232 Identities=10% Similarity=-0.119 Sum_probs=168.0
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-ChhHHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 007871 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQ----HGNPKEALYLFREMLCQGVRPDVISVMGA 313 (586)
Q Consensus 239 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~~~~~~~~~l 313 (586)
.++.++..+...+...|++++|...|++..++ +..++..+...+.. .+++++|+..|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 46788899999999999999999999988764 56788889999999 999999999999999876 66777778
Q ss_pred HHHHhc----cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCCh
Q 007871 314 ISACAQ----VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFG 389 (586)
Q Consensus 314 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 389 (586)
...+.. .+++++|...++...+.+ +...+..+...|... ....+++
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~---------------------------~~~~~~~ 130 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG---------------------------KVVTRDF 130 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC---------------------------SSSCCCH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC---------------------------CCcccCH
Confidence 888877 888888888888776654 334444444444430 0005566
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh----cCCHH
Q 007871 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSH----SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR----AGELE 461 (586)
Q Consensus 390 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 461 (586)
++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+. .+...+..+..+|.. .++++
T Consensus 131 ~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~ 203 (273)
T 1ouv_A 131 KKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFK 203 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred HHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 66666666666543 44555556666655 67777777777777662 245666677777777 77888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCc
Q 007871 462 QALNIVESMPMKPNLALWGTLLLACRN----HQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 462 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
+|.+.+++.....+...+..+...+.. .+++++|..+++++.+.+|+++
T Consensus 204 ~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 204 EALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 888877766322336666777777777 8888888888888888877654
No 46
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.58 E-value=1.2e-13 Score=137.67 Aligned_cols=301 Identities=10% Similarity=-0.029 Sum_probs=203.3
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHhhCCC-CChhHHHHHHHHHHhCCCch---HHHHHHHH
Q 007871 227 SSARILFEHMPIKDLISWNSMIDGYAKIG-----DLVAAQQLFNEMPE-RNVFSWSIMIDGYAQHGNPK---EALYLFRE 297 (586)
Q Consensus 227 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~---~A~~~~~~ 297 (586)
++|...|+.....++..+..+...+...+ +.++|...|++..+ .+...+..|...|...+... .+...+..
T Consensus 55 ~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~ 134 (452)
T 3e4b_A 55 KQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQ 134 (452)
T ss_dssp ----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 55555555554444555555555444444 56677777766654 23446666777776655433 45555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhccCC---C
Q 007871 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG---SLDEARRIFYSMTK---K 371 (586)
Q Consensus 298 m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~---~ 371 (586)
....|. ......+...+...+.++.+......+.+.-...++..+..+..+|...| +.++|.+.|+...+ +
T Consensus 135 a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~ 211 (452)
T 3e4b_A 135 WQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV 211 (452)
T ss_dssp HHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH
Confidence 555553 33455566667777755555544333333322334447888999999999 89999999987763 3
Q ss_pred CHhHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-h--hccCCHHHHHHHHHHhHHhhCCCCCh
Q 007871 372 NVISYNVMIAGLGMN----GFGEEALKCFAQMETEGIPKDDLIFLGVLIA-C--SHSGLATEGYRIFQSMKRHCGIEPKL 444 (586)
Q Consensus 372 ~~~~~~~l~~~~~~~----~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~ 444 (586)
+...+..+...|... +++++|+.+|++.. .| +...+..+... + ...+++++|..+|++..+. | +.
T Consensus 212 ~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~ 283 (452)
T 3e4b_A 212 TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QP 283 (452)
T ss_dssp CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CH
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CH
Confidence 444446777777654 79999999999987 33 34555566655 3 5689999999999999873 4 67
Q ss_pred HHHHHHHHHHhhcC-----CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCcchHHH
Q 007871 445 EHYSCLVDLLSRAG-----ELEQALNIVESMPMKPNLALWGTLLLACRN----HQNVTLAEVVVEGLVELKADDCGLYVL 515 (586)
Q Consensus 445 ~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~ 515 (586)
..+..|..+|. .| ++++|.+.|++.. ..++.....+...|.. ..++++|..+|+++.+. .++.....
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~ 359 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFA 359 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHH
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHH
Confidence 78888888887 55 9999999999998 6688888888877766 44999999999998874 56778899
Q ss_pred HHHHHHh----cCCchHHHHHHHHHHhCCCc
Q 007871 516 LSNIYAD----AGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 516 l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 542 (586)
|+.+|.. ..+.++|..+|++..+.|..
T Consensus 360 Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 360 IAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 9998875 45899999999999888764
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=1.4e-13 Score=122.67 Aligned_cols=193 Identities=12% Similarity=-0.013 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007871 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351 (586)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (586)
...+..+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|...++...+.. +.+...+..+..+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3444455555555555555555555555442 3344445555555555555555555555555543 2234444455555
Q ss_pred HHhc-----------CCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007871 352 YMKC-----------GSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417 (586)
Q Consensus 352 ~~~~-----------g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 417 (586)
+... |++++|...|++..+ .+...+..+...+...|++++|+..|++..+.. .+...+..+..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 5554 566666666655441 244555566666666666666666666666644 555566666666
Q ss_pred hhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
+...|++++|...++++.+ ..|.+...+..++.++...|++++|.+.+++.
T Consensus 161 ~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666665 23445556666666666666666666666554
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=6.5e-14 Score=127.43 Aligned_cols=141 Identities=12% Similarity=0.015 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 007871 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453 (586)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (586)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+ ..+.+...+..++.+
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVE--LNENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccHHHHHHHHHH
Confidence 334444444444445555555554444421 22334444444455555555555555555544 122334444455555
Q ss_pred HhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 454 LSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 454 ~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
+...|++++|...++++ . .+.+...+..+...+...|++++|...++++.+..|+++..+..++
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 55555555555555443 1 1123444445555555555555555555555555555555444443
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=6.4e-14 Score=127.50 Aligned_cols=196 Identities=13% Similarity=0.056 Sum_probs=155.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007871 341 DMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417 (586)
Q Consensus 341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 417 (586)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++... .+.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL-DSSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcchHHHHHHHHH
Confidence 445666777778888888888888887753 46678888899999999999999999999885 24466888899999
Q ss_pred hhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHH
Q 007871 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLA 495 (586)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a 495 (586)
+...|++++|...++++.+ ..+.+...+..++.++...|++++|...++++ . .+.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALR--AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999988 34567888999999999999999999999987 2 234678888899999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 496 EVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 496 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+..++++.+..|.++.++..++.+|...|++++|...++++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999774
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=8e-13 Score=120.96 Aligned_cols=167 Identities=13% Similarity=-0.007 Sum_probs=82.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhc
Q 007871 345 QTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD-DLIFLGVLIACSH 420 (586)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~ 420 (586)
+..+..+|...|++++|.+.++++. ..+...+..+...|...|++++|..+++++...+..|+ ...+..+...+..
T Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 153 (252)
T 2ho1_A 74 HAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ 153 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH
Confidence 3333334444444444444443332 12334444445555555555555555555544222332 2345555555555
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHH
Q 007871 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMK-PNLALWGTLLLACRNHQNVTLAEVV 498 (586)
Q Consensus 421 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~ 498 (586)
.|++++|...++++.+. .+.+...+..++.+|...|++++|...++++ ... .+...+..+...+...|++++|...
T Consensus 154 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 231 (252)
T 2ho1_A 154 MKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASY 231 (252)
T ss_dssp TTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 56666666666555552 2334455555555555555555555555544 112 2344445555555555666666666
Q ss_pred HHHHHhcCCCCcchH
Q 007871 499 VEGLVELKADDCGLY 513 (586)
Q Consensus 499 ~~~~~~~~p~~~~~~ 513 (586)
++++.+..|.++...
T Consensus 232 ~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 232 GLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHCTTSHHHH
T ss_pred HHHHHHHCCCCHHHH
Confidence 666655555555433
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=2.8e-13 Score=124.08 Aligned_cols=197 Identities=8% Similarity=-0.050 Sum_probs=169.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007871 342 MIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418 (586)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 418 (586)
...+..+...+...|++++|...|+++. ..+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 3456667777888888888888887765 3467788999999999999999999999998852 34677889999999
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHH
Q 007871 419 SHSGLATEGYRIFQSMKRHCGIEP-KLEHYSCLVDLLSRAGELEQALNIVESM-PM-KPNLALWGTLLLACRNHQNVTLA 495 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a 495 (586)
...|++++|..+++++.. .+..| +...+..++.+|...|++++|.+.++++ .. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999877 23444 5678889999999999999999999887 22 33678888999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 496 EVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 496 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
...++++.+..|.++..+..++.++...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999997753
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=4.4e-13 Score=120.23 Aligned_cols=195 Identities=13% Similarity=-0.001 Sum_probs=130.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007871 342 MIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418 (586)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 418 (586)
...+..+...+...|++++|.+.++.+. ..+...+..+...+...|++++|...++++... .+.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI-KPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCChHHHHHHHHHH
Confidence 3445555566666666666666665544 234556666666677777777777777776663 233456666677777
Q ss_pred hcc-CCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 007871 419 SHS-GLATEGYRIFQSMKRHCGIEP-KLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTL 494 (586)
Q Consensus 419 ~~~-g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 494 (586)
... |++++|...++++.+ .+..| +...+..++.++...|++++|...++++ ...| +...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 777 777777777777766 22223 3566667777777777777777777665 2223 46667777777777777777
Q ss_pred HHHHHHHHHhcCC-CCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 495 AEVVVEGLVELKA-DDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 495 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
|...++++.+..| .++..+..++..+...|+.++|..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7777777777777 7777777777777777777777777777654
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=3.5e-13 Score=124.94 Aligned_cols=227 Identities=10% Similarity=-0.053 Sum_probs=187.1
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC----HhHHHHHHHH
Q 007871 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--KN----VISYNVMIAG 382 (586)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~ 382 (586)
.+......+...|++++|...++.+.+.. +.+...+..+..+|...|++++|...++.+.+ ++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 44556778899999999999999998875 33555788889999999999999999987764 22 2358889999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHH
Q 007871 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462 (586)
Q Consensus 383 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 462 (586)
+...|++++|+..+++..+.. +.+...+..+...+...|++++|...+++..+ ..+.+...+..++..+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998842 33557899999999999999999999999988 345577888888834445569999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcC---CCC-----cchHHHHHHHHHhcCCchHH
Q 007871 463 ALNIVESM-PMKP-NLALWGTLLLACRNHQN---VTLAEVVVEGLVELK---ADD-----CGLYVLLSNIYADAGMWEHA 529 (586)
Q Consensus 463 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A 529 (586)
|.+.++++ ...| +...+..+...+...|+ +++|...++++.+.. |+. ..++..++.+|...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999987 3334 57777888888888888 889999999999875 432 25788899999999999999
Q ss_pred HHHHHHHHhC
Q 007871 530 LRIRKMMRKR 539 (586)
Q Consensus 530 ~~~~~~m~~~ 539 (586)
.+.++++.+.
T Consensus 241 ~~~~~~al~~ 250 (272)
T 3u4t_A 241 DAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999874
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=5.2e-13 Score=115.66 Aligned_cols=165 Identities=13% Similarity=0.083 Sum_probs=142.8
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHH
Q 007871 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450 (586)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 450 (586)
+...|..+...|...|++++|+..|++..+. .| +...+..+..++...|++++|...+..... ..+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHH
Confidence 4567888888999999999999999998884 44 557888888899999999999999999888 345567788888
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 007871 451 VDLLSRAGELEQALNIVESM-PM-KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528 (586)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 528 (586)
+..+...++++.|.+.+.+. .. +.+...+..+...+...|++++|+..|+++++.+|.++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 89999999999999998876 22 34678888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 007871 529 ALRIRKMMRKRK 540 (586)
Q Consensus 529 A~~~~~~m~~~~ 540 (586)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999988753
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=1.3e-12 Score=117.20 Aligned_cols=204 Identities=11% Similarity=-0.087 Sum_probs=139.2
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhc
Q 007871 310 VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMN 386 (586)
Q Consensus 310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~ 386 (586)
+..+...+...|++++|...++.+.+.. +.+...+..+..+|...|++++|.+.++.+. ..+...+..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 3333444444444444444444444332 2233444555555555555555555555443 23455667777777888
Q ss_pred -CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHH
Q 007871 387 -GFGEEALKCFAQMETEGIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL 464 (586)
Q Consensus 387 -~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 464 (586)
|++++|...++++...+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..++.++...|++++|.
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHH
Confidence 888888888888877433444 467777888888889999999999888872 3456778888889999999999999
Q ss_pred HHHHhC-C-CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHH
Q 007871 465 NIVESM-P-MK-PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLL 516 (586)
Q Consensus 465 ~~~~~~-~-~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 516 (586)
.+++++ . .+ .+...+..+...+...|+.+.+..+++.+.+..|+++.....+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 988876 2 22 4566677777778889999999999999998999988766544
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=7.4e-14 Score=138.15 Aligned_cols=263 Identities=12% Similarity=-0.044 Sum_probs=174.8
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChhHHHHHHHHHHHc----C-CCCchhHHH
Q 007871 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDV----ISVMGAISACAQVGALDLGKWIHVFMKRS----R-ITMDMIVQT 346 (586)
Q Consensus 276 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~ 346 (586)
..+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...++...+. + .+....++.
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 344455566666666666666666542 1222 24555555666666666666666555433 1 112234556
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC---------CCHhHHHHHHHHHHhcCC-----------------hHHHHHHHHHHH
Q 007871 347 ALIDMYMKCGSLDEARRIFYSMTK---------KNVISYNVMIAGLGMNGF-----------------GEEALKCFAQME 400 (586)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~m~ 400 (586)
.+...|...|++++|...+++..+ .....+..+...|...|+ +++|+..+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 666677777777777776665542 123356667777777787 788877777654
Q ss_pred HC----CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 007871 401 TE----GIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK----LEHYSCLVDLLSRAGELEQALNIVESMP 471 (586)
Q Consensus 401 ~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 471 (586)
.. +..+. ..++..+...+...|++++|...+++..+...-.++ ..++..++.+|...|++++|...+++.-
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 41 11121 246777788888899999999988887762111112 2377788889999999999999887661
Q ss_pred ----CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 472 ----MKP----NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD------CGLYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 472 ----~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
... ....+..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|..++++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 111 24567778888999999999999999998864332 4478889999999999999999999886
Q ss_pred hC
Q 007871 538 KR 539 (586)
Q Consensus 538 ~~ 539 (586)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=3.8e-13 Score=132.71 Aligned_cols=270 Identities=12% Similarity=-0.019 Sum_probs=131.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C----hhHHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCC-CH
Q 007871 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPE--R-N----VFSWSIMIDGYAQHGNPKEALYLFREMLCQ----GVRP-DV 307 (586)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~~-~~ 307 (586)
....+......+...|++++|...|++..+ | + ...+..+...+...|++++|...++++... +-.| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344455566666667777777776666543 2 2 234556666666667777777666665432 1111 12
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHcCCC-C----chhHHHHHHHHHHhcCC--------------------HHHHH
Q 007871 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRIT-M----DMIVQTALIDMYMKCGS--------------------LDEAR 362 (586)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~--------------------~~~a~ 362 (586)
.++..+...+...|++++|...++...+.... + ...++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 34455555566666666666666555433100 0 12244555555555555 55555
Q ss_pred HHHhccCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHhhccCCHHHHH
Q 007871 363 RIFYSMTK-----K----NVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKD----DLIFLGVLIACSHSGLATEGY 428 (586)
Q Consensus 363 ~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~----~~~~~~l~~~~~~~g~~~~A~ 428 (586)
..+++..+ + ....+..+...|...|++++|...+++..... -.++ ..++..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 55544321 1 11234445555555555555555555544310 0111 124444455555555555555
Q ss_pred HHHHHhHHhhCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChHHHH
Q 007871 429 RIFQSMKRHCGIEPK----LEHYSCLVDLLSRAGELEQALNIVESMP----MKPN----LALWGTLLLACRNHQNVTLAE 496 (586)
Q Consensus 429 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~a~ 496 (586)
..+++......-.++ ..++..++.+|...|++++|...+++.- ..++ ..++..+...+...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 555554431100011 2344455555555555555555554430 0111 233444444455555555555
Q ss_pred HHHHHHHhcCCCC
Q 007871 497 VVVEGLVELKADD 509 (586)
Q Consensus 497 ~~~~~~~~~~p~~ 509 (586)
..++++.+..+..
T Consensus 328 ~~~~~al~~~~~~ 340 (406)
T 3sf4_A 328 HFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 5555555544444
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.53 E-value=5e-13 Score=129.00 Aligned_cols=225 Identities=11% Similarity=0.012 Sum_probs=193.4
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhccCC---CCHhHHHHHHHHH
Q 007871 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS-LDEARRIFYSMTK---KNVISYNVMIAGL 383 (586)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~l~~~~ 383 (586)
..|..+...+...|++++|...++.+++.. +.+...|..+..++...|+ +++|+..|+++.. .+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456777778889999999999999999886 4467788999999999997 9999999998873 4778999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh-cCCHH
Q 007871 384 GMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR-AGELE 461 (586)
Q Consensus 384 ~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 461 (586)
...|++++|+..|++++.. .| +...|..+..++...|++++|+..++++++ -.+.+...|+.++.+|.. .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999984 44 567899999999999999999999999998 345678999999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC--------
Q 007871 462 QA-----LNIVESM-PMKP-NLALWGTLLLACRNHQ--NVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG-------- 524 (586)
Q Consensus 462 ~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 524 (586)
+| ++.+++. ...| +...|..+...+...| ++++|+..++++ +.+|+++.++..++++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4677665 3345 6788888888888888 699999999998 888999999999999999975
Q ss_pred -CchHHHHHHHHH-Hh
Q 007871 525 -MWEHALRIRKMM-RK 538 (586)
Q Consensus 525 -~~~~A~~~~~~m-~~ 538 (586)
.+++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999998 55
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=5.3e-13 Score=127.75 Aligned_cols=263 Identities=12% Similarity=-0.034 Sum_probs=178.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChhHHHHHHHHHHHc----CCC-CchhHHHH
Q 007871 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPD----VISVMGAISACAQVGALDLGKWIHVFMKRS----RIT-MDMIVQTA 347 (586)
Q Consensus 277 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 347 (586)
.....+...|++++|...|+++.+.. +.+ ...+..+...+...|+++.|...++...+. +.. ....++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 34455566666666666666666542 122 234555556666666666666666554332 111 12345666
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHHHHHHH
Q 007871 348 LIDMYMKCGSLDEARRIFYSMTK-----KN----VISYNVMIAGLGMNGF--------------------GEEALKCFAQ 398 (586)
Q Consensus 348 l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~ 398 (586)
+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 67777777777777777766542 12 2366677777777787 7888887776
Q ss_pred HHHC----CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 007871 399 METE----GIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP----KLEHYSCLVDLLSRAGELEQALNIVES 469 (586)
Q Consensus 399 m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 469 (586)
.... +..|. ...+..+...+...|++++|...+++..+.....+ ...++..++.+|...|++++|...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5431 11121 24677778888899999999999988775211111 134778889999999999999999887
Q ss_pred CC----CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCCchHHHHHHHH
Q 007871 470 MP----MKPN----LALWGTLLLACRNHQNVTLAEVVVEGLVELKADD------CGLYVLLSNIYADAGMWEHALRIRKM 535 (586)
Q Consensus 470 ~~----~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 535 (586)
.. ..++ ...+..+...+...|++++|...++++.+..+.. ..++..++.+|.+.|++++|..++++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 61 1122 4566778888999999999999999998875432 44788899999999999999999999
Q ss_pred HHhCC
Q 007871 536 MRKRK 540 (586)
Q Consensus 536 m~~~~ 540 (586)
..+..
T Consensus 329 a~~~~ 333 (338)
T 3ro2_A 329 HLEIS 333 (338)
T ss_dssp HHHC-
T ss_pred HHHHH
Confidence 87653
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.52 E-value=1.7e-13 Score=137.61 Aligned_cols=192 Identities=10% Similarity=-0.067 Sum_probs=160.6
Q ss_pred CchhHHHHHHHHHHhcCCH-HHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007871 340 MDMIVQTALIDMYMKCGSL-DEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415 (586)
Q Consensus 340 ~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 415 (586)
.+...+..+..+|...|++ ++|.+.|++.. ..+...|..+...|...|++++|...|++..+ ..|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 3455566666666666776 77777666654 23567788888888889999999999999888 567778888888
Q ss_pred HHhhcc---------CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc--------CCHHHHHHHHHhC-CCCC---
Q 007871 416 IACSHS---------GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA--------GELEQALNIVESM-PMKP--- 474 (586)
Q Consensus 416 ~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p--- 474 (586)
.++... |++++|...++++.+ -.+.+...|..++.+|... |++++|++.|++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 999998 999999999999988 3456788899999999998 9999999999887 3344
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 007871 475 -NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535 (586)
Q Consensus 475 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 535 (586)
+...|..+..++...|++++|+..|+++.+.+|+++.++..++.++...|++++|.+.+++
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7888999999999999999999999999999999999999999999999999999976543
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=8.9e-14 Score=137.22 Aligned_cols=263 Identities=12% Similarity=-0.018 Sum_probs=130.9
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChhHHHHHHHHHHHc----CCCC-chh
Q 007871 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD----VISVMGAISACAQVGALDLGKWIHVFMKRS----RITM-DMI 343 (586)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 343 (586)
..+......+...|++++|...|+++.+.+ +.+ ...+..+...+...|+++.|...++.+.+. +..| ...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 334444555556666666666666655542 112 134445555555666666666655554322 1111 133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHHH
Q 007871 344 VQTALIDMYMKCGSLDEARRIFYSMTK-----KN----VISYNVMIAGLGMNGF--------------------GEEALK 394 (586)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~ 394 (586)
++..+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 455555556666666666655554432 11 2245555555555565 555555
Q ss_pred HHHHHHHC----CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhhcCCHHHHHH
Q 007871 395 CFAQMETE----GIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK----LEHYSCLVDLLSRAGELEQALN 465 (586)
Q Consensus 395 ~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 465 (586)
.+++.... +..|. ..++..+...+...|++++|...+++..+...-.++ ..++..++.+|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 55544321 11111 124555555555666666666666555441111111 2245555566666666666666
Q ss_pred HHHhCC----CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCCchHHHH
Q 007871 466 IVESMP----MKPN----LALWGTLLLACRNHQNVTLAEVVVEGLVELKADD------CGLYVLLSNIYADAGMWEHALR 531 (586)
Q Consensus 466 ~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 531 (586)
.+++.- ..++ ..++..+...+...|++++|...++++.+..+.. +.++..++.+|...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 555440 0111 3344455555556666666666666655543222 3355555666666666666665
Q ss_pred HHHHH
Q 007871 532 IRKMM 536 (586)
Q Consensus 532 ~~~~m 536 (586)
.+++.
T Consensus 329 ~~~~a 333 (406)
T 3sf4_A 329 FAEKH 333 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 62
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.48 E-value=9.8e-13 Score=122.07 Aligned_cols=218 Identities=13% Similarity=0.006 Sum_probs=177.4
Q ss_pred hccCChhHHHHHHHHHHHcCCC---CchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHH
Q 007871 318 AQVGALDLGKWIHVFMKRSRIT---MDMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEE 391 (586)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 391 (586)
...|++++|...++.+.+.... .+..++..+..++...|++++|...|+++. ..+...|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 4557899999999999887432 245678889999999999999999999876 3467899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 007871 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM- 470 (586)
Q Consensus 392 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 470 (586)
|...++++.+.. +.+...+..+..++...|++++|...++++.+. .|+..........+...|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999842 335678999999999999999999999999883 344334444555667789999999999765
Q ss_pred C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 471 P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD----DCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 471 ~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
. .+++...+ .++..+...++.++|...++++.+..|. ++..+..++.+|.+.|++++|...++++.+..
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 2 22333333 4666678888999999999999887664 47889999999999999999999999998754
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=1.2e-12 Score=128.07 Aligned_cols=226 Identities=8% Similarity=-0.040 Sum_probs=151.7
Q ss_pred HHHHHhccCChhHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC-----HhHHH
Q 007871 313 AISACAQVGALDLGKWIHVFMKRS----RITM-DMIVQTALIDMYMKCGSLDEARRIFYSMTK-----KN-----VISYN 377 (586)
Q Consensus 313 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-----~~~~~ 377 (586)
....+...|++++|...++...+. +-++ ...++..+..+|...|++++|...+.+..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334455666777777766666543 1111 234566677777777777777776665541 11 24667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHhhccCCHHHHHHHHHHhHHh---hCC-CCChHHHH
Q 007871 378 VMIAGLGMNGFGEEALKCFAQMETEGI-PKDD----LIFLGVLIACSHSGLATEGYRIFQSMKRH---CGI-EPKLEHYS 448 (586)
Q Consensus 378 ~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~-~~~~~~~~ 448 (586)
.+...|...|++++|+..+++...... .++. .++..+..+|...|++++|...+++..+- .+. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777788888888888888877664210 1111 36777888888888888888888887661 123 33456788
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC----C--CC-CHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCcchHHHHHH
Q 007871 449 CLVDLLSRAGELEQALNIVESMP----M--KP-NLALWGTLLLACRNHQN---VTLAEVVVEGLVELKADDCGLYVLLSN 518 (586)
Q Consensus 449 ~l~~~~~~~g~~~~A~~~~~~~~----~--~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 518 (586)
.++.+|...|++++|.+.+++.- . .| ....+..+...+...|+ +++|+.++++. ...|....++..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 88888889999999888887761 1 12 12234556666778888 77777777766 233555667888999
Q ss_pred HHHhcCCchHHHHHHHHHHhC
Q 007871 519 IYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 519 ~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+|...|++++|..++++..+.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999988653
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.46 E-value=1.5e-10 Score=119.36 Aligned_cols=219 Identities=11% Similarity=0.006 Sum_probs=161.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHH-HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 007871 289 KEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK-WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367 (586)
Q Consensus 289 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 367 (586)
+.+..+|++++.. ++-....|...+.-+...|+.+.|. .+|+..... ++.+...+...+....+.|+++.|.++|+.
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455677777765 3446667777777777778888886 888888764 345566667777777888888888888877
Q ss_pred cCC-------------CC------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-c
Q 007871 368 MTK-------------KN------------VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH-S 421 (586)
Q Consensus 368 ~~~-------------~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~ 421 (586)
+.. |+ ...|...+....+.|+.+.|..+|.+..+.-..+....|...+..-.+ .
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 653 21 236777788888889999999999999885111223344333322223 3
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCChHHHH
Q 007871 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP-MKP----NLALWGTLLLACRNHQNVTLAE 496 (586)
Q Consensus 422 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~~a~ 496 (586)
++++.|..+|+...+. .+.+...+...++.....|+.+.|..+|++.- ..| ....|...+..-...|+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5699999999999994 55567778888888889999999999999873 223 3467888888888999999999
Q ss_pred HHHHHHHhcCCCCcc
Q 007871 497 VVVEGLVELKADDCG 511 (586)
Q Consensus 497 ~~~~~~~~~~p~~~~ 511 (586)
.+.+++.+..|+++.
T Consensus 562 ~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 562 TLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHSTTCCH
T ss_pred HHHHHHHHhCCCCcH
Confidence 999999999998763
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=4.8e-12 Score=109.53 Aligned_cols=167 Identities=14% Similarity=0.058 Sum_probs=140.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007871 341 DMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417 (586)
Q Consensus 341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 417 (586)
++.+|..+...|...|++++|.+.|++.. +.+..++..+...|...|++++|+..+.+.... .+.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-DTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CchhHHHHHHHHHH
Confidence 56678888888888888888888888776 346778888889999999999999999988874 23455677777888
Q ss_pred hhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 007871 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLA 495 (586)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 495 (586)
+...++++.|...+.+... ..+.+...+..++.+|...|++++|++.|++. ...| +...+..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8899999999999999888 35567888999999999999999999999887 3334 678899999999999999999
Q ss_pred HHHHHHHHhcCCCCc
Q 007871 496 EVVVEGLVELKADDC 510 (586)
Q Consensus 496 ~~~~~~~~~~~p~~~ 510 (586)
+..|+++++.+|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999998764
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=1.1e-12 Score=129.64 Aligned_cols=264 Identities=11% Similarity=-0.042 Sum_probs=172.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--C-Ch----hHHHHHHHHHHhCCCchHHHHHHHHHHHC----CC-CCCHHHHH
Q 007871 244 WNSMIDGYAKIGDLVAAQQLFNEMPE--R-NV----FSWSIMIDGYAQHGNPKEALYLFREMLCQ----GV-RPDVISVM 311 (586)
Q Consensus 244 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~-~~~~~~~~ 311 (586)
+..+...+...|++++|...|++..+ | +. ..|..+...+...|++++|...+++..+. +. +.....+.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 33444555566666666666655542 2 11 34555666666666666666666665532 11 11234455
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHc----C-CCCchhHHHHHHHHHHhcCC-----------------HHHHHHHHhccC
Q 007871 312 GAISACAQVGALDLGKWIHVFMKRS----R-ITMDMIVQTALIDMYMKCGS-----------------LDEARRIFYSMT 369 (586)
Q Consensus 312 ~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~~~ 369 (586)
.+...+...|++++|...++.+.+. + .+....++..+...|...|+ +++|.+.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 5666666667777776666655433 1 11123456666777777777 777777766543
Q ss_pred C-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007871 370 K-----K----NVISYNVMIAGLGMNGFGEEALKCFAQMETEGI-PKD----DLIFLGVLIACSHSGLATEGYRIFQSMK 435 (586)
Q Consensus 370 ~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 435 (586)
+ . ....+..+...|...|++++|+..+++...... .++ ..++..+...+...|++++|...+++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 2 1 234677788888899999999998888765210 112 1367788888999999999999998877
Q ss_pred HhhCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007871 436 RHCGIEP----KLEHYSCLVDLLSRAGELEQALNIVESMP----MKP----NLALWGTLLLACRNHQNVTLAEVVVEGLV 503 (586)
Q Consensus 436 ~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 503 (586)
....-.. ...++..++.+|...|++++|.+.+++.. ..+ ....+..+...+...|++++|...++++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6211111 24677888999999999999999998761 111 24467778888999999999999999998
Q ss_pred hcCC
Q 007871 504 ELKA 507 (586)
Q Consensus 504 ~~~p 507 (586)
++.+
T Consensus 371 ~~~~ 374 (411)
T 4a1s_A 371 QLAX 374 (411)
T ss_dssp HHCC
T ss_pred HHHh
Confidence 8654
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.42 E-value=2.8e-12 Score=133.76 Aligned_cols=163 Identities=15% Similarity=0.104 Sum_probs=142.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHH
Q 007871 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450 (586)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 450 (586)
+..+|+.+...|...|++++|++.|++.++ +.|+ ...+..+..+|.+.|++++|+..|++..+ -.+.+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 356788888899999999999999999888 4554 57888899999999999999999999888 234567889999
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 007871 451 VDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528 (586)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 528 (586)
+.+|...|++++|++.|++. ...| +...+..+..++...|++++|+..|+++++++|+++.++..++.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999887 3444 678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 007871 529 ALRIRKMMRK 538 (586)
Q Consensus 529 A~~~~~~m~~ 538 (586)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888754
No 68
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.42 E-value=7e-12 Score=112.74 Aligned_cols=187 Identities=10% Similarity=-0.061 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccC---C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 007871 342 MIVQTALIDMYMKCGSLDEARRIFYSMT---K-KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLI 416 (586)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~ 416 (586)
+..+......+...|++++|...|+... . ++...+..+..++...|++++|+..+++... ..|+. ..+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 3444455555555555555555555443 1 3444444455555555555555555555554 23332 34555555
Q ss_pred HhhccCCHHHHHHHHHHhHHhhCCCCCh-------HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 007871 417 ACSHSGLATEGYRIFQSMKRHCGIEPKL-------EHYSCLVDLLSRAGELEQALNIVESM-PMKPN---LALWGTLLLA 485 (586)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~ 485 (586)
++...|++++|...+++..+. .+.+. ..|..++..+...|++++|++.++++ ...|+ ...+..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 555555555555555555541 22223 33444455555555555555555444 22333 2333333333
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+.. .+...++++....+.++..+... .....|.+++|...+++..+.
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 322 22333444444444443333222 223334458999999988773
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=8e-13 Score=125.09 Aligned_cols=236 Identities=11% Similarity=0.002 Sum_probs=129.6
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHc------CC
Q 007871 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQ-------GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS------RI 338 (586)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 338 (586)
..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++.+.+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456677777788888888888888777752 12233445566666677777777777776665443 11
Q ss_pred -CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHH
Q 007871 339 -TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE------GIPKD-DLI 410 (586)
Q Consensus 339 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~ 410 (586)
+....++..+...|...|++++|...+ +++.+. +..|. ...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~-------------------------------~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLC-------------------------------KRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHH-------------------------------HHHHHHHHHHHCTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHH-------------------------------HHHHHHHHHhcCCCChHHHHH
Confidence 112234444555555555555555544 443331 11121 234
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhh-----C-CCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC----------CCC
Q 007871 411 FLGVLIACSHSGLATEGYRIFQSMKRHC-----G-IEPKLEHYSCLVDLLSRAGELEQALNIVESMP----------MKP 474 (586)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p 474 (586)
+..+...+...|++++|..+++++.... + .+....++..++.+|...|++++|.+.++++. ..+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 5555556666666666666666655410 1 11123455566666666666666666665541 011
Q ss_pred -------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 475 -------NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 475 -------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
....+......+...+.+.++...++.+....|..+.++..++.+|.+.|++++|..++++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1112222333345566777778888888888888888999999999999999999999988765
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.41 E-value=2.9e-12 Score=122.56 Aligned_cols=262 Identities=13% Similarity=-0.011 Sum_probs=164.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC--C-C----hhHHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCC-CHHHHHHHH
Q 007871 247 MIDGYAKIGDLVAAQQLFNEMPE--R-N----VFSWSIMIDGYAQHGNPKEALYLFREMLCQ----GVRP-DVISVMGAI 314 (586)
Q Consensus 247 l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~ 314 (586)
....+...|++++|...|++..+ | + ...+..+...+...|++++|...+++.... +..| ....+..+.
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 34445555666666555555432 2 1 234555556666666666666666655432 1111 133455555
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCC-Cc----hhHHHHHHHHHHhcCC--------------------HHHHHHHHhccC
Q 007871 315 SACAQVGALDLGKWIHVFMKRSRIT-MD----MIVQTALIDMYMKCGS--------------------LDEARRIFYSMT 369 (586)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~ 369 (586)
..+...|++++|...++...+.... ++ ..++..+...|...|+ +++|.+.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 5666666666666666555433110 11 2355566666666777 777766665543
Q ss_pred C-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007871 370 K-----K----NVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKD----DLIFLGVLIACSHSGLATEGYRIFQSMK 435 (586)
Q Consensus 370 ~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 435 (586)
+ + ....+..+...+...|++++|...+++..... -.++ ..++..+...+...|++++|...+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 1 13466777788888899999988888876421 0111 2367778888889999999999998876
Q ss_pred HhhCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007871 436 RHCGIEPK----LEHYSCLVDLLSRAGELEQALNIVESMP----MKP----NLALWGTLLLACRNHQNVTLAEVVVEGLV 503 (586)
Q Consensus 436 ~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 503 (586)
....-..+ ..++..++.+|...|++++|...+++.- ..+ ...++..+...+...|++++|...++++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 52111111 5577788899999999999999988761 111 24466778888999999999999999999
Q ss_pred hcCCC
Q 007871 504 ELKAD 508 (586)
Q Consensus 504 ~~~p~ 508 (586)
+..+.
T Consensus 331 ~~~~~ 335 (338)
T 3ro2_A 331 EISRE 335 (338)
T ss_dssp HC---
T ss_pred HHHHh
Confidence 87653
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.40 E-value=1.2e-11 Score=106.79 Aligned_cols=161 Identities=15% Similarity=0.056 Sum_probs=109.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh
Q 007871 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455 (586)
Q Consensus 376 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (586)
+..+...+...|++++|...++++... .+.+...+..+...+...|++++|...++++.+. .+.+...+..++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 444455555556666666665555442 1234455566666666666666666666666652 3345566666677777
Q ss_pred hcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 007871 456 RAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 456 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 533 (586)
..|++++|.+.++++ . .+.+...+..+...+...|++++|...++++.+..|.++.++..++.++...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777777665 1 22356667777777888888888888888888888888888888888888888888888888
Q ss_pred HHHHhC
Q 007871 534 KMMRKR 539 (586)
Q Consensus 534 ~~m~~~ 539 (586)
+++.+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 887654
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=9.5e-11 Score=110.59 Aligned_cols=219 Identities=12% Similarity=0.081 Sum_probs=134.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCCh-------hHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 007871 289 KEALYLFREMLCQGVRPDVISVMGAISACA-------QVGAL-------DLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354 (586)
Q Consensus 289 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 354 (586)
++|...|++++... +.+...|..++..+. ..|+. ++|..+|+...+.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666777776642 345555555555543 23554 6677777766663113344566666666777
Q ss_pred cCCHHHHHHHHhccCC--C-CHh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-hccCCHHHHHH
Q 007871 355 CGSLDEARRIFYSMTK--K-NVI-SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC-SHSGLATEGYR 429 (586)
Q Consensus 355 ~g~~~~a~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~~A~~ 429 (586)
.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.+ +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777766553 2 233 66777777777777777777777776632 22333333332221 12577777777
Q ss_pred HHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007871 430 IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP----MKP--NLALWGTLLLACRNHQNVTLAEVVVEGLV 503 (586)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 503 (586)
+|++..+. .+.+...|..++..+.+.|++++|..+|++.- ..| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777662 34456677777777777777777777777662 233 35566666666677777777777777777
Q ss_pred hcCCCCcc
Q 007871 504 ELKADDCG 511 (586)
Q Consensus 504 ~~~p~~~~ 511 (586)
+..|+++.
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 77776543
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=5.2e-11 Score=116.38 Aligned_cols=229 Identities=8% Similarity=-0.039 Sum_probs=159.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCC------CchhHHH
Q 007871 278 MIDGYAQHGNPKEALYLFREMLCQ----GVRP-DVISVMGAISACAQVGALDLGKWIHVFMKRSRIT------MDMIVQT 346 (586)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 346 (586)
....+...|++++|...+++..+. +-.+ ...++..+...+...|+++.|...+....+.... ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344455666666666666666542 1111 2234555666666666666666666655443111 1134566
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHH
Q 007871 347 ALIDMYMKCGSLDEARRIFYSMTK-----KN----VISYNVMIAGLGMNGFGEEALKCFAQMETE----GIPK-DDLIFL 412 (586)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~ 412 (586)
.+..+|...|++++|...+++..+ ++ ..++..+...|...|++++|+..+++.... +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777788888888888887776652 11 236777888899999999999999887762 3323 346788
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHHhh---CCCCChHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 007871 413 GVLIACSHSGLATEGYRIFQSMKRHC---GIEPKLEHYSCLVDLLSRAGE---LEQALNIVESMPMKPN-LALWGTLLLA 485 (586)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~ 485 (586)
.+..++...|++++|...+++...-. +.+.....+..+...|...|+ +++|+.++++....|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 89999999999999999999877621 222223446778889999999 8999999999865543 4466778888
Q ss_pred HHhcCChHHHHHHHHHHHhcC
Q 007871 486 CRNHQNVTLAEVVVEGLVELK 506 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~ 506 (586)
|...|++++|...++++.+..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998754
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=5.6e-10 Score=108.55 Aligned_cols=262 Identities=14% Similarity=-0.022 Sum_probs=163.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCChhHHHHHHHHHHHcCCC-Cc----hhHHHHH
Q 007871 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVI----SVMGAISACAQVGALDLGKWIHVFMKRSRIT-MD----MIVQTAL 348 (586)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 348 (586)
....+...|++++|...+++........+.. .+..+...+...|+++.|...++...+.... .+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344556677777777777766543212221 3344455566677777777776665443111 11 1234556
Q ss_pred HHHHHhcCCHHHHHHHHhccCC----------C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--CHHHHHH
Q 007871 349 IDMYMKCGSLDEARRIFYSMTK----------K-NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP--K--DDLIFLG 413 (586)
Q Consensus 349 ~~~~~~~g~~~~a~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~--p--~~~~~~~ 413 (586)
...+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 6677777888777777765541 1 1234556677778888888888888877653211 1 2345667
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHH-----HHHHHHhhcCCHHHHHHHHHhCC-CCCC-----HHHHHHH
Q 007871 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS-----CLVDLLSRAGELEQALNIVESMP-MKPN-----LALWGTL 482 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l 482 (586)
+...+...|++++|...+++.............+. ..+..+...|++++|...+++.. ..|. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 77778888888888888888765211111111111 23344778888999888888773 1121 2345566
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCC------CcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 483 LLACRNHQNVTLAEVVVEGLVELKAD------DCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 483 ~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
...+...|++++|...++++.+..+. ...++..++.++...|++++|...+++....
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 67788889999999888888775422 1236667788888899999998888887653
No 75
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=5.7e-11 Score=112.10 Aligned_cols=214 Identities=10% Similarity=0.020 Sum_probs=173.0
Q ss_pred hHHHHHHHHHHHcCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHhccCC---C-CHhHHHHHHHHHHh
Q 007871 324 DLGKWIHVFMKRSRITMDMIVQTALIDMYM-------KCGSL-------DEARRIFYSMTK---K-NVISYNVMIAGLGM 385 (586)
Q Consensus 324 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~a~~~~~~~~~---~-~~~~~~~l~~~~~~ 385 (586)
++|...|+.+.+.. +.++..|..++..+. ..|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888887764 456677777777765 35775 899999997654 3 55689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh-hcCCHHH
Q 007871 386 NGFGEEALKCFAQMETEGIPKD-DL-IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS-RAGELEQ 462 (586)
Q Consensus 386 ~~~~~~A~~~~~~m~~~g~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 462 (586)
.|++++|..+|++..+ ..|+ .. .|..++..+.+.|++++|..+|++..+ ..+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 5564 33 788899999999999999999999988 33455666655444432 3799999
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCC-CcchHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 463 ALNIVESM-PM-KPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL---KAD-DCGLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 463 A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
|..+|++. .. +.+...|..++..+...|++++|..+|+++++. .|. +..+|..++..+.+.|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 22 236788999999999999999999999999996 443 6678999999999999999999999999
Q ss_pred HhCCCc
Q 007871 537 RKRKIK 542 (586)
Q Consensus 537 ~~~~~~ 542 (586)
.+....
T Consensus 268 ~~~~p~ 273 (308)
T 2ond_A 268 FTAFRE 273 (308)
T ss_dssp HHHTTT
T ss_pred HHHccc
Confidence 876543
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.35 E-value=3.1e-11 Score=121.03 Aligned_cols=177 Identities=9% Similarity=-0.067 Sum_probs=155.4
Q ss_pred HHHHHHHHhccC---CCCHhHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHH
Q 007871 358 LDEARRIFYSMT---KKNVISYNVMIAGLGMNGFG-EEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQ 432 (586)
Q Consensus 358 ~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (586)
++++...++... ..+...+..+...+...|++ ++|+..|++..+. .| +...+..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666665543 34678899999999999999 9999999999884 44 46899999999999999999999999
Q ss_pred HhHHhhCCCCChHHHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CChH
Q 007871 433 SMKRHCGIEPKLEHYSCLVDLLSRA---------GELEQALNIVESM-PMKP-NLALWGTLLLACRNH--------QNVT 493 (586)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------~~~~ 493 (586)
++.+ ..|+...+..++.+|... |++++|++.+++. ...| +...|..+..+|... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9987 347788999999999999 9999999999987 3334 688899999999888 9999
Q ss_pred HHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 494 LAEVVVEGLVELKA---DDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 494 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+|+..|+++++.+| .++.++..++.+|...|++++|.+.+++..+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999999999774
No 77
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.34 E-value=3.1e-09 Score=109.59 Aligned_cols=428 Identities=9% Similarity=0.023 Sum_probs=268.0
Q ss_pred CchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---hhHHHH
Q 007871 92 NPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH---MGCARS 168 (586)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~ 168 (586)
...+.+..|++.+..+ +-|..+|..++..+...+.++.+..+++.+... ++.....|...+..-.+.|+ ++.+.+
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455566666666554 347788889998888888899999999998875 45667788888888888888 888988
Q ss_pred HhccCCC-----CChhhHHHHHHHHHhCCCh--------hHHHHHHhhCC------CCC-hhHHHHHHHHHhh-------
Q 007871 169 VFEGSEI-----KDLVSWNLVLRGFVECGEM--------GKAREVFDEMP------QKD-AISWSIMIDGYRK------- 221 (586)
Q Consensus 169 ~~~~~~~-----~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~------~~~-~~~~~~ll~~~~~------- 221 (586)
+|++... +++..|...+....+.++. +....+|+... .++ ...|...+... .
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~-~~~~~~~~ 203 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFL-EHWKPVNK 203 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH-HTCCCCSH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHH-HhccccCc
Confidence 8886543 5677777777665554443 22335555432 122 23444444332 1
Q ss_pred --ccCCHHHHHHHHHhCCC-C--C-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHH
Q 007871 222 --KKGDISSARILFEHMPI-K--D-LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295 (586)
Q Consensus 222 --~~g~~~~a~~~~~~~~~-~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 295 (586)
..++++.+..+|++... | + ..+|......-...+. ..+.+++ .- ...+++.|...+
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~---------------~e--~~~~y~~Ar~~~ 265 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHI---------------GE--LSAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHH---------------HH--HHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHH---------------HH--hhHHHHHHHHHH
Confidence 12234555555555542 1 0 1122211111000000 0011110 00 011233344444
Q ss_pred HHHHH--CCC----C-----------C-----CH---HHHHHHHHHHhccC-------ChhHHHHHHHHHHHcCCCCchh
Q 007871 296 REMLC--QGV----R-----------P-----DV---ISVMGAISACAQVG-------ALDLGKWIHVFMKRSRITMDMI 343 (586)
Q Consensus 296 ~~m~~--~g~----~-----------~-----~~---~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~ 343 (586)
.++.. .++ + | +. ..|...+.---..+ ..+.+..+|++++..- +....
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~ 344 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPE 344 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHH
T ss_pred HHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHH
Confidence 43321 111 0 1 11 22333332222211 1234566788877663 45677
Q ss_pred HHHHHHHHHHhcCCHHHHH-HHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---------CCCC---
Q 007871 344 VQTALIDMYMKCGSLDEAR-RIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEG---------IPKD--- 407 (586)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~-~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g---------~~p~--- 407 (586)
+|-..+..+...|+.++|. .+|+.... .+...|...+....+.|++++|..+|+++.... -.|+
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 8888888888889988896 99887763 456667788888899999999999999988631 0142
Q ss_pred ---------HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC-CHHHHHHHHHhC--CCCCC
Q 007871 408 ---------DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG-ELEQALNIVESM--PMKPN 475 (586)
Q Consensus 408 ---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~p~ 475 (586)
...|...+....+.|+.+.|..+|.++.+. ........|...+..-.+.| +.+.|.++|+.. ..+.+
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 235777777777889999999999999883 12223445554444444544 589999999877 22335
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKAD---DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 476 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
...|...+......|+.+.|..+|++++...|+ ...+|...+..-.+.|+.+.+..+.+++.+.-..
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 667778888888899999999999999998873 5577888888889999999999999999876543
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=4.8e-11 Score=116.32 Aligned_cols=223 Identities=11% Similarity=-0.025 Sum_probs=149.7
Q ss_pred HHHhccCChhHHHHHHHHHHHcCC--C---CchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC-----HhHHHHH
Q 007871 315 SACAQVGALDLGKWIHVFMKRSRI--T---MDMIVQTALIDMYMKCGSLDEARRIFYSMTK-----KN-----VISYNVM 379 (586)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-----~~~~~~l 379 (586)
..+...|++++|...++.+.+... . ....++..+..+|...|+++.|...+++..+ ++ ..+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 344566777777777776654311 1 1234566677777777777777776665541 11 3456777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHh---hCCCCChHHHHHHH
Q 007871 380 IAGLGMNGFGEEALKCFAQMETE----GIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRH---CGIEPKLEHYSCLV 451 (586)
Q Consensus 380 ~~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~l~ 451 (586)
...|...|++++|+..+++.... |..+ ...++..+..+|...|++++|...+++...- .+.+....++..++
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 78888888888888888776552 1111 1246777888888889999998888887661 12333467788888
Q ss_pred HHHhhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 007871 452 DLLSRAGELEQALNIVESM----PM--KPN-LALWGTLLLACRNHQN---VTLAEVVVEGLVELKADDCGLYVLLSNIYA 521 (586)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 521 (586)
.+|.+.|++++|.+.+++. .. .|. ...+..+...+...++ +.+|+..+++. ...|.....+..++.+|.
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHH
Confidence 8899999999998888765 11 222 3344555555677777 77777777762 222445567778999999
Q ss_pred hcCCchHHHHHHHHHHh
Q 007871 522 DAGMWEHALRIRKMMRK 538 (586)
Q Consensus 522 ~~g~~~~A~~~~~~m~~ 538 (586)
..|++++|..++++..+
T Consensus 348 ~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999888754
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=1.1e-10 Score=104.94 Aligned_cols=206 Identities=9% Similarity=-0.024 Sum_probs=163.1
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHH
Q 007871 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMI 380 (586)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~ 380 (586)
+.|+..+......+...|++++|...|+...+...+++...+..+..++...|++++|...+++..+ .+...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3466788888999999999999999999999987546777777799999999999999999998763 3567889999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCC--ChHHHHHH
Q 007871 381 AGLGMNGFGEEALKCFAQMETEGIPKD-D-------LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP--KLEHYSCL 450 (586)
Q Consensus 381 ~~~~~~~~~~~A~~~~~~m~~~g~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l 450 (586)
..|...|++++|+..+++..+. .|+ . ..|..+...+...|++++|...++++.+ ..+. +...+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHH
Confidence 9999999999999999999884 443 4 4577788888999999999999999987 2333 46788888
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 451 VDLLSRAGELEQALNIVESMP--MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+.+|...|+. +++++. ...+...+.... ....+.+++|+..++++.+++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 8888776653 222221 122344444333 34456799999999999999999998888777654
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=1.5e-10 Score=99.81 Aligned_cols=167 Identities=8% Similarity=-0.046 Sum_probs=144.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 007871 343 IVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419 (586)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 419 (586)
..+..+...+...|++++|...++.+.+ .+...+..+...+...|++++|...++++.+. .+.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHH
Confidence 4566778888899999999999998874 46778888999999999999999999999885 2446678888999999
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHH
Q 007871 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEV 497 (586)
Q Consensus 420 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~ 497 (586)
..|++++|...++++.. ..+.+...+..++.++...|++++|.++++++ . .+.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAE--ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHh--cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999988 35567888999999999999999999999887 2 23467888899999999999999999
Q ss_pred HHHHHHhcCCCCcch
Q 007871 498 VVEGLVELKADDCGL 512 (586)
Q Consensus 498 ~~~~~~~~~p~~~~~ 512 (586)
.++++.+..|.++..
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 999999998887654
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.26 E-value=1.7e-09 Score=105.30 Aligned_cols=225 Identities=11% Similarity=0.032 Sum_probs=142.6
Q ss_pred HHHhCCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCChhHHHHHHHHHHHcCC-----C-CchhHHHHHH
Q 007871 281 GYAQHGNPKEALYLFREMLCQGV-RPD----VISVMGAISACAQVGALDLGKWIHVFMKRSRI-----T-MDMIVQTALI 349 (586)
Q Consensus 281 ~~~~~~~~~~A~~~~~~m~~~g~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~~l~ 349 (586)
.+...|++++|+..|+++.+... .++ ..++..+...+...|+++.|...+....+... . ....+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34445555555555555443210 011 22344444455555555555555544433210 0 0133455666
Q ss_pred HHHHhcCCHHHHHHHHhccCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 007871 350 DMYMKCGSLDEARRIFYSMTK-----KN----VISYNVMIAGLGMNGFGEEALKCFAQMETE----GIPKDDLIFLGVLI 416 (586)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~l~~ 416 (586)
.+|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..+++.... +.+....++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 666677777777666665442 11 235667777888888888888888877651 22233567888888
Q ss_pred HhhccCCHHHHHHHHHHhHHhhC---CCCChHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 007871 417 ACSHSGLATEGYRIFQSMKRHCG---IEPKLEHYSCLVDLLSRAGE---LEQALNIVESMPMKPN-LALWGTLLLACRNH 489 (586)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~ 489 (586)
++...|++++|...+++..+... .+.....+..+...|...|+ +++|+.++++....|+ ...+..+...|...
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHC
Confidence 99999999999999998877322 22234456667777888888 8899999998754443 34556777789999
Q ss_pred CChHHHHHHHHHHHhc
Q 007871 490 QNVTLAEVVVEGLVEL 505 (586)
Q Consensus 490 ~~~~~a~~~~~~~~~~ 505 (586)
|++++|...++++.+.
T Consensus 350 g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 350 CHFEQAAAFYRKVLKA 365 (378)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988764
No 82
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.24 E-value=4.5e-11 Score=112.96 Aligned_cols=238 Identities=11% Similarity=0.015 Sum_probs=143.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------C---ChhHHHHHHHHHHhCCCchHHHHHHHHHHHC------C
Q 007871 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPE--------R---NVFSWSIMIDGYAQHGNPKEALYLFREMLCQ------G 302 (586)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g 302 (586)
+..++..+...+...|++++|...|+++.+ . ...++..+...+...|++++|...++++... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 455677788888888888888888887754 1 2356778888999999999999999988764 2
Q ss_pred C-CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcC------CCC-chhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHh
Q 007871 303 V-RPDVISVMGAISACAQVGALDLGKWIHVFMKRSR------ITM-DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374 (586)
Q Consensus 303 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 374 (586)
- +.....+..+...+...|++++|...++.+.+.. ..| ....+..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la------------------------- 160 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA------------------------- 160 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------------------------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH-------------------------
Confidence 2 2245577888889999999999999998876541 111 122334444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhh------CCC
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMETE------GIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHC------GIE 441 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~ 441 (586)
..+...|++++|+.+++++... +..|. ..++..+..++...|++++|...++++.+.. ...
T Consensus 161 ------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 161 ------LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp ------HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ------HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4444455555555555544432 11222 2355566666666677777776666665410 011
Q ss_pred C-C------hHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007871 442 P-K------LEHYSCLVDLLSRAGELEQALNIVESMP-MKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508 (586)
Q Consensus 442 ~-~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 508 (586)
+ . ...+..+...+...+.+.+|...+.... ..| ...++..+...|...|++++|..++++++++.|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 1 1122222333344455555555565553 223 4567788888899999999999999999887664
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=1.2e-10 Score=108.11 Aligned_cols=224 Identities=10% Similarity=-0.006 Sum_probs=114.7
Q ss_pred hCCCchHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHc------CC-CCchhHHHHHH
Q 007871 284 QHGNPKEALYLFREMLCQ-------GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS------RI-TMDMIVQTALI 349 (586)
Q Consensus 284 ~~~~~~~A~~~~~~m~~~-------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~ 349 (586)
..|++++|+..+++..+. ..+....++..+...+...|++++|...++.+.+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666665541 11223445566666666777777777666665443 11 11223444455
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHhhccC
Q 007871 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE------GIPK-DDLIFLGVLIACSHSG 422 (586)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~~~l~~~~~~~g 422 (586)
.+|...|++++|.+.+ ++.... ...| ...++..+...+...|
T Consensus 93 ~~~~~~g~~~~A~~~~-------------------------------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 141 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLC-------------------------------KRALEIREKVLGKFHPDVAKQLNNLALLCQNQG 141 (283)
T ss_dssp HHHHTTTCHHHHHHHH-------------------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhccHHHHHHHH-------------------------------HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC
Confidence 5555555555555554 443321 0012 1235555566666666
Q ss_pred CHHHHHHHHHHhHHhh-----C-CCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC----------CCC-CHHHHHHHHHH
Q 007871 423 LATEGYRIFQSMKRHC-----G-IEPKLEHYSCLVDLLSRAGELEQALNIVESMP----------MKP-NLALWGTLLLA 485 (586)
Q Consensus 423 ~~~~A~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p-~~~~~~~l~~~ 485 (586)
++++|..+++++.+.. . .+....++..++.+|...|++++|..+++++- ..+ ....+..+...
T Consensus 142 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (283)
T 3edt_B 142 KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEER 221 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 6666666666655410 0 11234456666666666666666666665541 111 12222222222
Q ss_pred HHhc------CChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 486 CRNH------QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 486 ~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
.... ..+..+...++......|..+.++..++.+|...|++++|..++++..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 222 EESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2222 2233344444443334455667788888889999999999998888765
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.20 E-value=2.2e-10 Score=107.01 Aligned_cols=186 Identities=9% Similarity=-0.013 Sum_probs=119.3
Q ss_pred HHHhcCCHHHHHHHHhccCC-------C--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 007871 351 MYMKCGSLDEARRIFYSMTK-------K--NVISYNVMIAGLGMNGFGEEALKCFAQMETE----GIPKD-DLIFLGVLI 416 (586)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~ 416 (586)
.|...|++++|.+.|.+... + ...+|+.+...|...|++++|+..+++.... |-.+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666666554431 1 1346677777777777887777777776542 11111 246777888
Q ss_pred Hhhcc-CCHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CH-----HHHHHH
Q 007871 417 ACSHS-GLATEGYRIFQSMKRHCGIEPK----LEHYSCLVDLLSRAGELEQALNIVESM-PMKP---NL-----ALWGTL 482 (586)
Q Consensus 417 ~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~-----~~~~~l 482 (586)
+|... |++++|...|++..+-..-..+ ..++..++..|...|++++|+..+++. ...| .. ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 9999999998888762110111 356788889999999999999998876 1222 21 256677
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCcch-----HHHHHHHHH--hcCCchHHHHHHHHH
Q 007871 483 LLACRNHQNVTLAEVVVEGLVELKADDCGL-----YVLLSNIYA--DAGMWEHALRIRKMM 536 (586)
Q Consensus 483 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~m 536 (586)
..++...|++++|+..++++++++|..... +..++.++. ..+++++|+..|+++
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 777888999999999999999988876543 344555554 446677777777544
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.20 E-value=1.6e-09 Score=99.36 Aligned_cols=181 Identities=9% Similarity=-0.067 Sum_probs=105.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-C---HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-HHHHHH
Q 007871 342 MIVQTALIDMYMKCGSLDEARRIFYSMTK--K-N---VISYNVMIAGLGMNGFGEEALKCFAQMETEGI-PKD-DLIFLG 413 (586)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~-~~~~~~ 413 (586)
...+..+...+.+.|++++|...|+.+.+ | + ...+..+..+|...|++++|+..|++...... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 33444455555555666666665555542 2 2 34455555555555566666655555555210 111 234444
Q ss_pred HHHHhhc--------cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007871 414 VLIACSH--------SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485 (586)
Q Consensus 414 l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 485 (586)
+..++.. .|++++|...|+++.+. .+.+......+.......+.. ...+..+...
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~~ 157 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKL---------------ARKQYEAARL 157 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 4455554 55555555555555552 222222222211111110000 0113556777
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhc----------CCchHHHHHHHHHHhC
Q 007871 486 CRNHQNVTLAEVVVEGLVELKADDC---GLYVLLSNIYADA----------GMWEHALRIRKMMRKR 539 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~ 539 (586)
+...|++++|+..|+++++..|+++ ..+..++.+|... |++++|...++++.+.
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 8999999999999999999998854 5788999999877 8999999999999774
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.17 E-value=7e-10 Score=103.61 Aligned_cols=174 Identities=10% Similarity=0.022 Sum_probs=112.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC-----CC----HhHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCC---C---
Q 007871 344 VQTALIDMYMKCGSLDEARRIFYSMTK-----KN----VISYNVMIAGLGMN-GFGEEALKCFAQMETEGIPK---D--- 407 (586)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~g~~p---~--- 407 (586)
+++.+..+|...|++++|...+++..+ .+ ..+++.+...|... |++++|+..|++..+. .| +
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence 344444444445555554444443331 11 23566777888885 8888888888887662 22 1
Q ss_pred -HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCC-CCh-----HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH--
Q 007871 408 -DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE-PKL-----EHYSCLVDLLSRAGELEQALNIVESM-PMKPNLA-- 477 (586)
Q Consensus 408 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-- 477 (586)
..++..+...+...|++++|...|++.... ... +.. ..+..++.++...|++++|...+++. ...|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 246788888899999999999999998873 221 121 25777888899999999999999887 3344321
Q ss_pred ----HHHHHHHHHH--hcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 478 ----LWGTLLLACR--NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 478 ----~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
.+..++.++. ..+++++|+..|+++..++|.....+..+-..+
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 2344555554 456788999999888888877655555544433
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.17 E-value=2.7e-10 Score=118.94 Aligned_cols=163 Identities=13% Similarity=0.094 Sum_probs=132.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 007871 341 DMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD-DLIFLGVLI 416 (586)
Q Consensus 341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~ 416 (586)
+...++.+..+|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|+..|++.++ +.|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 455777788888888888888888887652 4567888888888899999999999998888 4554 578888888
Q ss_pred HhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 007871 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTL 494 (586)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 494 (586)
++...|++++|++.|++..+ -.+.+...+..++.+|...|++++|++.|++. ...| +...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999998887 23456788889999999999999999999877 3445 57788888888999999999
Q ss_pred HHHHHHHHHhcCC
Q 007871 495 AEVVVEGLVELKA 507 (586)
Q Consensus 495 a~~~~~~~~~~~p 507 (586)
|.+.+++++++.|
T Consensus 164 A~~~~~kal~l~~ 176 (723)
T 4gyw_A 164 YDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh
Confidence 9999998887543
No 88
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.16 E-value=2.9e-09 Score=103.45 Aligned_cols=258 Identities=12% Similarity=-0.002 Sum_probs=152.8
Q ss_pred HHHHhcCCHHHHHHHHhhCCC----CCh----hHHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCCH----HHHHHHHH
Q 007871 249 DGYAKIGDLVAAQQLFNEMPE----RNV----FSWSIMIDGYAQHGNPKEALYLFREMLCQGV-RPDV----ISVMGAIS 315 (586)
Q Consensus 249 ~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~~~~----~~~~~l~~ 315 (586)
..+...|++++|...+++... .+. .+++.+...+...|++++|...+++...... .++. .++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 344455666666655554321 111 1344555566666777777776666554210 0111 22344555
Q ss_pred HHhccCChhHHHHHHHHHHHc----CCC--C-chhHHHHHHHHHHhcCCHHHHHHHHhccCC--C------CHhHHHHHH
Q 007871 316 ACAQVGALDLGKWIHVFMKRS----RIT--M-DMIVQTALIDMYMKCGSLDEARRIFYSMTK--K------NVISYNVMI 380 (586)
Q Consensus 316 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~------~~~~~~~l~ 380 (586)
.+...|++++|...++...+. +.. | ....+..+...+...|++++|...+++... + ....+..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 666677777777776665433 211 2 223455566777777787777777765431 1 124566677
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHhhccCCHHHHHHHHHHhHHhhCCCC---ChHHHHHHH
Q 007871 381 AGLGMNGFGEEALKCFAQMETEGIPKD--DLIFL----GVLIACSHSGLATEGYRIFQSMKRHCGIEP---KLEHYSCLV 451 (586)
Q Consensus 381 ~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~ 451 (586)
..+...|++++|...+++.......++ ..... ..+..+...|++++|...++..... ...+ ....+..+.
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHH
Confidence 778888888888888887765311111 11111 2233466788888888888887652 2111 122456777
Q ss_pred HHHhhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007871 452 DLLSRAGELEQALNIVESMP-------MKPNL-ALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 507 (586)
.++...|++++|...+++.. ..++. ..+..+..++...|+.++|...++++.+..+
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 88888899998888887651 11122 2455566668888999999999998887643
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.15 E-value=8.5e-09 Score=94.25 Aligned_cols=245 Identities=11% Similarity=0.014 Sum_probs=153.7
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCC-hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHH
Q 007871 248 IDGYAKIGDLVAAQQLFNEMPERN-VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326 (586)
Q Consensus 248 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a 326 (586)
++-..-.|.+..++.-...+...+ ...-..+.+++...|++... ..-.|....+..+...+ ..+ +
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----H
Confidence 344556788888887666654322 22333345777777777642 11234443444333333 222 5
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007871 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK-----KNVISYNVMIAGLGMNGFGEEALKCFAQMET 401 (586)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 401 (586)
...++...+.+ .++...+..+..++...|++++|++++..... .+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666554 34445555777888888888888888887643 2455677778888888888888888888877
Q ss_pred CCCCC-----CHHHHHHHHHHh--hccC--CHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 007871 402 EGIPK-----DDLIFLGVLIAC--SHSG--LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472 (586)
Q Consensus 402 ~g~~p-----~~~~~~~l~~~~--~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 472 (586)
..| +..+...++.++ ...| ++.+|..+|+++... .|+..+...+..++.+.|++++|.+.++.+..
T Consensus 165 --~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 --AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp --HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred --cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466 355666666552 2233 788888888887652 34422223334477888888888888875421
Q ss_pred -----------CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHH
Q 007871 473 -----------KP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYV 514 (586)
Q Consensus 473 -----------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 514 (586)
.| ++.++..++......|+ +|.++++++.+..|++|.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 13 45555455555555565 778888888888888875543
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.15 E-value=4.3e-09 Score=96.21 Aligned_cols=174 Identities=10% Similarity=0.024 Sum_probs=91.0
Q ss_pred HHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 361 ARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 361 a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
|...|++.. .++..++..+..++...|++++|++++.+.+..|-.+ +...+...+..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 445555443 2334444455556666666666666666654433212 234555556666666666666666666655
Q ss_pred hhCCCC-----ChHHHHHHHHH--HhhcC--CHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-
Q 007871 437 HCGIEP-----KLEHYSCLVDL--LSRAG--ELEQALNIVESMPM-KPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL- 505 (586)
Q Consensus 437 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 505 (586)
. .| +..+...|+.+ ....| ++.+|..+|+++.. .|+..+...++.++...|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 1 33 23333444433 22223 66666666666522 233223333333556666666666666655554
Q ss_pred ---------CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 506 ---------KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 506 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+|+++.++..++.+....|+ +|.++++++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 35566666555555555555 556666666554
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=1.1e-09 Score=88.58 Aligned_cols=127 Identities=15% Similarity=0.139 Sum_probs=87.3
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 007871 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRN 488 (586)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~ 488 (586)
+..+...+...|++++|..+++.+.+. .+.+...+..++..+...|++++|..+++++ . .+.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 444555555566666666666666552 2334555666666666666666666666655 1 22345666667777778
Q ss_pred cCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 489 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.|++++|...++++.+..|.++..+..++.++...|++++|...++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 888888888888888888888888888888888888888888888887654
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.13 E-value=2e-10 Score=95.29 Aligned_cols=140 Identities=10% Similarity=-0.039 Sum_probs=76.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCH
Q 007871 382 GLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460 (586)
Q Consensus 382 ~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 460 (586)
.+...|++++|+..+++... ..|+. ..+..+...|...|++++|.+.|++..+ -.+.+..+|..++.+|...|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCch
Confidence 34445556666666655443 22322 2344555556666666666666666655 2333555666666666666666
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH-HHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 007871 461 EQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEV-VVEGLVELKADDCGLYVLLSNIYADAGM 525 (586)
Q Consensus 461 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 525 (586)
++|+..|++. ...| +...+..+...+...|++++|.. +++++++++|.++.+|...+.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 6666666554 2233 45555555555666666554433 3456666666666666666655555553
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.13 E-value=2.3e-09 Score=95.81 Aligned_cols=181 Identities=12% Similarity=0.011 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC--CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHH
Q 007871 343 IVQTALIDMYMKCGSLDEARRIFYSMTK--KN----VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD----LIFL 412 (586)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~ 412 (586)
..+..+...+...|++++|...|+.+.+ |+ ...+..+..+|.+.|++++|+..|+++.+. .|+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444556666777777777777776652 22 235666667777777777777777777663 2322 2344
Q ss_pred HHHHHhhc------------------cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 007871 413 GVLIACSH------------------SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474 (586)
Q Consensus 413 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 474 (586)
.+..++.. .|++++|...|+++.+ ..|.+...+........-.+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l~~~~~~~~------------- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRLVFLKDRLA------------- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHHHHHHHHHH-------------
Confidence 44444432 3455666666666555 22223322222111100000000
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC---GLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 475 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
.....+...+...|++++|+..|+++++..|+++ .++..++.+|.+.|++++|.+.++++...+..
T Consensus 148 --~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 148 --KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 0112455668899999999999999999999986 57899999999999999999999999876554
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.13 E-value=1.4e-09 Score=99.88 Aligned_cols=204 Identities=12% Similarity=-0.042 Sum_probs=145.3
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhccCC--C----CHhH
Q 007871 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD--MIVQTALIDMYMKCGSLDEARRIFYSMTK--K----NVIS 375 (586)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~----~~~~ 375 (586)
+.+...+......+...|++++|...|+.+.+...... ...+..+..+|...|++++|...|+.+.+ | ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 44667777888889999999999999999988753221 56788899999999999999999998863 3 2346
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHH
Q 007871 376 YNVMIAGLGM--------NGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446 (586)
Q Consensus 376 ~~~l~~~~~~--------~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 446 (586)
+..+..++.. .|++++|+..|++.... .|+. .... +...+..+... ....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~--------------a~~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDD--------------ATQKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHH--------------HHHHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHH--------------HHHHHHHHHHH-----HHHH
Confidence 7778888888 99999999999999884 4443 2221 11111111110 1123
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhcCCCCcc
Q 007871 447 YSCLVDLLSRAGELEQALNIVESM-PMKP----NLALWGTLLLACRNH----------QNVTLAEVVVEGLVELKADDCG 511 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~ 511 (586)
+..++.+|...|++++|+..|+++ ...| ....+..+..++... |++++|+..++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 556778888888888888888776 2223 245666677777655 8999999999999999999874
Q ss_pred h---HHHHHHHHHhcCCchH
Q 007871 512 L---YVLLSNIYADAGMWEH 528 (586)
Q Consensus 512 ~---~~~l~~~~~~~g~~~~ 528 (586)
. ...+..++.+.|++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 4 4445555555555443
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.12 E-value=1e-10 Score=96.95 Aligned_cols=124 Identities=12% Similarity=-0.003 Sum_probs=94.6
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 007871 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQN 491 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 491 (586)
|...+...|++++|+..++.... ..+.+...+..++.+|...|++++|++.|++. ...| +...|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 44566777888888888887755 22234455667888888999999999988877 3344 67888888888888999
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH-HHHHHhC
Q 007871 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI-RKMMRKR 539 (586)
Q Consensus 492 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 539 (586)
+++|+..|+++++++|.++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988776654 5776654
No 96
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.08 E-value=1.3e-08 Score=89.84 Aligned_cols=163 Identities=9% Similarity=-0.015 Sum_probs=130.6
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC----CHHHHHHHHHHhHHhhCCCCChHH
Q 007871 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG----LATEGYRIFQSMKRHCGIEPKLEH 446 (586)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~ 446 (586)
.++..+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|..+|++..+. -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 466677777777778888888888888888765 56677777777777 6 899999999988762 35677
Q ss_pred HHHHHHHHhh----cCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCcchHH
Q 007871 447 YSCLVDLLSR----AGELEQALNIVESMPMKPN----LALWGTLLLACRN----HQNVTLAEVVVEGLVELKADDCGLYV 514 (586)
Q Consensus 447 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 514 (586)
+..|...|.. .+++++|+++|++.....+ +..+..+...|.. .+++++|+.+|+++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 8888888877 8899999999988743333 7788888888887 78999999999999988 67778899
Q ss_pred HHHHHHHhc-C-----CchHHHHHHHHHHhCCCc
Q 007871 515 LLSNIYADA-G-----MWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 515 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~~ 542 (586)
.|+.+|... | ++++|..++++..+.|..
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 999998765 3 899999999998887653
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.07 E-value=3.6e-09 Score=98.38 Aligned_cols=176 Identities=9% Similarity=-0.046 Sum_probs=141.0
Q ss_pred HHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 358 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
.+.....+......+...+..+...+...|++++|...|++.... .| +...+..+...+...|++++|...++++..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 344555555555556667778888899999999999999999884 44 557888899999999999999999999876
Q ss_pred hhCCCCChHH-HHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--cc
Q 007871 437 HCGIEPKLEH-YSCLVDLLSRAGELEQALNIVESM-PMK-PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD--CG 511 (586)
Q Consensus 437 ~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~ 511 (586)
. .|+... .......+...++.++|...+++. ... .+...+..+...+...|++++|+..++++++.+|.+ ..
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 2 344433 333334467778888888888776 233 468888999999999999999999999999999998 88
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 512 LYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 512 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
.+..++.+|...|+.++|...|++...
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999999999887643
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.05 E-value=7.1e-10 Score=116.35 Aligned_cols=145 Identities=9% Similarity=-0.065 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 007871 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453 (586)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (586)
..+..+...+...|++++|+..|++..+. -+.+...+..+..++...|++++|...|+++.+ -.+.+...+..++.+
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~ 510 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAER-VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD--TFPGELAPKLALAAT 510 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHH
Confidence 34444444444444444444444444442 111233444444444444444444444444444 122233444444444
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007871 454 LSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522 (586)
Q Consensus 454 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 522 (586)
|...|++++ ++.|+++ ...| +...+..+..++...|++++|+..|+++.+.+|.++.++..++.++..
T Consensus 511 ~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 511 AELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 444444444 4444443 1122 334444444444444444444444444444444444444444444433
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=8.7e-09 Score=83.25 Aligned_cols=132 Identities=14% Similarity=0.111 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (586)
.|..+...+...|++++|..+++++...+ +.+...+..+...+...|++++|..+++++... .+.+...+..++.++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46667778888888888888888887742 345667778888888889999999999988872 345677788888899
Q ss_pred hhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007871 455 SRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509 (586)
Q Consensus 455 ~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 509 (586)
...|++++|.+.++++ . .+.+...+..+...+...|++++|...++++.+.+|.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999988876 2 23367778888888999999999999999998887753
No 100
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.01 E-value=2e-08 Score=92.97 Aligned_cols=203 Identities=9% Similarity=-0.031 Sum_probs=118.0
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcC-----C-
Q 007871 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQ------GV-RPDVISVMGAISACAQVGALDLGKWIHVFMKRSR-----I- 338 (586)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~- 338 (586)
..++..+...+...|++++|+..++++.+. +- +....++..+...+...|++++|...+..+.+.. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 456777888888888888888888887754 22 2234567788888899999999998888765541 0
Q ss_pred -CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHH
Q 007871 339 -TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE------GIPKD-DLI 410 (586)
Q Consensus 339 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~ 410 (586)
+....++..+..+|... |++++|...+++.... +..|+ ..+
T Consensus 123 ~~~~~~~~~~la~~~~~~-------------------------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQ-------------------------------GKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp CHHHHHHHHHHHHHHHTT-------------------------------TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHc-------------------------------CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 11223344444444444 4445554444444332 11222 245
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhh------C-CCCChHHHHHHHHHHhhcC------CHHHHHHHHHhCCC-CC-C
Q 007871 411 FLGVLIACSHSGLATEGYRIFQSMKRHC------G-IEPKLEHYSCLVDLLSRAG------ELEQALNIVESMPM-KP-N 475 (586)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~-~p-~ 475 (586)
+..+..++...|++++|..+++++.+.. . .......+..+...+...+ .+..+...++.... .| .
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 6666677777777777777777766520 1 1122333444443333322 34444444554432 23 3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007871 476 LALWGTLLLACRNHQNVTLAEVVVEGLVEL 505 (586)
Q Consensus 476 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 505 (586)
...+..+...|...|++++|..+++++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456777888899999999999999988764
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=6.1e-09 Score=107.38 Aligned_cols=160 Identities=11% Similarity=0.004 Sum_probs=125.4
Q ss_pred cCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 007871 355 CGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431 (586)
Q Consensus 355 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (586)
.|++++|.+.+++..+ .+...+..+...+...|++++|...+++..+. .+.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-HPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-STTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998774 35778999999999999999999999999884 2335678899999999999999999999
Q ss_pred HHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHHhcC
Q 007871 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNH---QNVTLAEVVVEGLVELK 506 (586)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 506 (586)
++..+ ..+.+...+..++.+|...|++++|.+.+++. ...| +...+..+...+... |++++|...++++++.+
T Consensus 81 ~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99988 34557889999999999999999999999887 3334 678888888899999 99999999999999999
Q ss_pred CCCcchHHHHH
Q 007871 507 ADDCGLYVLLS 517 (586)
Q Consensus 507 p~~~~~~~~l~ 517 (586)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99998888776
No 102
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.98 E-value=4.7e-09 Score=86.46 Aligned_cols=98 Identities=9% Similarity=-0.038 Sum_probs=88.0
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+...+..++..+.+.|++++|+..|++. ...| ++..|..+..++...|++++|+..|+++++++|+++..+..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 4567888889999999999999999887 3344 7888999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhCC
Q 007871 521 ADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 521 ~~~g~~~~A~~~~~~m~~~~ 540 (586)
...|++++|...|++..+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999998753
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.97 E-value=5.3e-09 Score=89.34 Aligned_cols=155 Identities=12% Similarity=0.055 Sum_probs=92.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH-HhhcC
Q 007871 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL-LSRAG 458 (586)
Q Consensus 380 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g 458 (586)
...+...|++++|+..|++..+. -+.+...+..+..++...|++++|...++.+... .|+...+..+... +...+
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDE-LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHH-HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhhc
Confidence 33444455555555555544431 1112344455555555555555555555555441 1122222221111 11112
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCCchHHHHHHH
Q 007871 459 ELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD--CGLYVLLSNIYADAGMWEHALRIRK 534 (586)
Q Consensus 459 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 534 (586)
...+|...+++. ...| +...+..+...+...|++++|+..++++++.+|.. +..+..++.++...|+.++|...|+
T Consensus 89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 222345555554 2334 57778888888889999999999999999998865 5588999999999999999999988
Q ss_pred HHHh
Q 007871 535 MMRK 538 (586)
Q Consensus 535 ~m~~ 538 (586)
+...
T Consensus 169 ~al~ 172 (176)
T 2r5s_A 169 RQLY 172 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.97 E-value=1.1e-08 Score=81.73 Aligned_cols=93 Identities=12% Similarity=0.067 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 007871 446 HYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA 523 (586)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 523 (586)
.+...+..|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.++.+|..++.+|...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3444555555555555555555544 1222 4455555555555555555555555555555555555555555555555
Q ss_pred CCchHHHHHHHHHHh
Q 007871 524 GMWEHALRIRKMMRK 538 (586)
Q Consensus 524 g~~~~A~~~~~~m~~ 538 (586)
|++++|.+.|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
No 105
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.96 E-value=2.8e-09 Score=87.91 Aligned_cols=97 Identities=11% Similarity=0.002 Sum_probs=79.7
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PMK-PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+...+..++..+...|++++|+..|++. ... .+...|..+..++...|++++|+..|+++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 5566777788888888888888888876 223 36777888888888889999999999999988899888888899999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007871 521 ADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 521 ~~~g~~~~A~~~~~~m~~~ 539 (586)
...|++++|...|++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999888888664
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.94 E-value=8.5e-09 Score=82.28 Aligned_cols=115 Identities=10% Similarity=-0.018 Sum_probs=97.5
Q ss_pred CCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHH
Q 007871 404 IPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMK-PNLALWG 480 (586)
Q Consensus 404 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~ 480 (586)
+.|+. ..+......|.+.|++++|++.|++..+ -.+.+...|..++.+|.+.|++++|++.+++. ... .+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34443 4677788889999999999999999888 34567889999999999999999999999887 333 4688899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 481 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
.+..++...|++++|+..|+++++++|.++.++..+..++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999998887653
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.94 E-value=1.4e-08 Score=95.54 Aligned_cols=218 Identities=12% Similarity=-0.024 Sum_probs=146.1
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 007871 285 HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ-VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363 (586)
Q Consensus 285 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 363 (586)
.|++++|.+++++..+.. +.. +.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456677777777666531 110 111 45666666665543 345666777777777
Q ss_pred HHhccCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHhhccCCHHHHHH
Q 007871 364 IFYSMTK-----KN----VISYNVMIAGLGMNGFGEEALKCFAQMETEG---IPKD--DLIFLGVLIACSHSGLATEGYR 429 (586)
Q Consensus 364 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g---~~p~--~~~~~~l~~~~~~~g~~~~A~~ 429 (586)
.|.+..+ .+ ...|+.+...|...|++++|+..|++....- -.+. ..++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7665542 11 3467778888889999999999998876521 1121 2467788888888 99999999
Q ss_pred HHHHhHHhh---CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChHHHHH
Q 007871 430 IFQSMKRHC---GIEP-KLEHYSCLVDLLSRAGELEQALNIVESMP----MKPN----LALWGTLLLACRNHQNVTLAEV 497 (586)
Q Consensus 430 ~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~a~~ 497 (586)
.+++...-. +..+ ...++..++.+|...|++++|++.+++.- ..++ ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999887621 1111 14678889999999999999999998761 1122 2355566667778899999999
Q ss_pred HHHHHHhcCCCCcch-----HHHHHHHHHhcCCchHHHH
Q 007871 498 VVEGLVELKADDCGL-----YVLLSNIYADAGMWEHALR 531 (586)
Q Consensus 498 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 531 (586)
.++++. ..|..... ...++.++ ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 88875543 33445544 5677666555
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.92 E-value=1.7e-08 Score=88.74 Aligned_cols=128 Identities=8% Similarity=-0.029 Sum_probs=97.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh
Q 007871 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455 (586)
Q Consensus 377 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (586)
..+...|...|++++|+..|++..+. .| +...+..+..++...|++++|...|+++.+ -.|.+...+..++.+|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHH
Confidence 33788889999999999999998884 44 567888899999999999999999999988 34557888888988887
Q ss_pred hcCC--HHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007871 456 RAGE--LEQALNIVESMPMKPNLA--LWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509 (586)
Q Consensus 456 ~~g~--~~~A~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 509 (586)
..|+ .+.+...++... .|++. .+.....++...|++++|+..|++++++.|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6654 445566666653 34433 34445556777899999999999999999874
No 109
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.91 E-value=4.2e-09 Score=110.48 Aligned_cols=153 Identities=10% Similarity=-0.017 Sum_probs=134.8
Q ss_pred HhcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh
Q 007871 384 GMNGFGEEALKCFAQME--------TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455 (586)
Q Consensus 384 ~~~~~~~~A~~~~~~m~--------~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (586)
...|++++|++.+++.. +. .+.+...+..+..++...|++++|...++++.+ ..+.+...+..++.+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHH
Confidence 77899999999999988 42 233457888899999999999999999999988 34557889999999999
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 007871 456 RAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 456 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 533 (586)
..|++++|++.|++. ...| +...+..+..++...|++++ +..|+++++.+|.++.++..++.+|.+.|++++|.+.|
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999987 3344 67888899999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q 007871 534 KMMRKRK 540 (586)
Q Consensus 534 ~~m~~~~ 540 (586)
++..+..
T Consensus 558 ~~al~l~ 564 (681)
T 2pzi_A 558 DEVPPTS 564 (681)
T ss_dssp HTSCTTS
T ss_pred HhhcccC
Confidence 8876543
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=4.2e-08 Score=91.14 Aligned_cols=135 Identities=13% Similarity=0.084 Sum_probs=115.0
Q ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHH
Q 007871 405 PKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP-MKPNLALWGTLL 483 (586)
Q Consensus 405 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~ 483 (586)
+.+...+..+...+...|++++|...++++.+ ..+.+...+..++.+|...|++++|...++++. ..|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 33446777888889999999999999999988 355678899999999999999999999999983 456655444333
Q ss_pred HH-HHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007871 484 LA-CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 484 ~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 541 (586)
.. +...++.+.|+..++++.+.+|+++..+..++.+|...|++++|...++++.+...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 33 77888899999999999999999999999999999999999999999999988543
No 111
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.88 E-value=3.6e-07 Score=85.21 Aligned_cols=161 Identities=8% Similarity=-0.101 Sum_probs=121.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC----hHHHH
Q 007871 378 VMIAGLGMNGFGEEALKCFAQMETEG-IPKDDL----IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK----LEHYS 448 (586)
Q Consensus 378 ~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ 448 (586)
..+..+...|++++|..++++..... ..|+.. .+..+...+...|++++|...++++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888899999999999887732 122211 2334666777888999999999998872111222 23688
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC-------CC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------cchH
Q 007871 449 CLVDLLSRAGELEQALNIVESMP-------MK-P-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD------CGLY 513 (586)
Q Consensus 449 ~l~~~~~~~g~~~~A~~~~~~~~-------~~-p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 513 (586)
.++.+|...|++++|..+++++- .. + ...++..+...|...|++++|+..++++++..+.. +.++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999988762 11 1 23467788888999999999999999999865332 5689
Q ss_pred HHHHHHHHhcCC-chHHHHHHHHHHh
Q 007871 514 VLLSNIYADAGM-WEHALRIRKMMRK 538 (586)
Q Consensus 514 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 538 (586)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988754
No 112
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.88 E-value=3.6e-08 Score=86.68 Aligned_cols=156 Identities=13% Similarity=0.037 Sum_probs=115.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHhhccCCHHHHHHHHHHhHHhhCCC
Q 007871 379 MIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLG----------------VLIACSHSGLATEGYRIFQSMKRHCGIE 441 (586)
Q Consensus 379 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 441 (586)
....+...|++++|+..|++... ..|+. ..+.. +..++...|++++|...+++..+ -.|
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p 85 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAP 85 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCC
Confidence 34455667777777777777666 34433 34555 88899999999999999999998 345
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 442 PKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQ--NVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 442 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
.+...+..++.+|...|++++|+..|++. ...| +...+..+...+...| +...+...++++....|. ...+..++
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHH
Confidence 67899999999999999999999999987 3344 6788888888876554 345566666666543222 23566678
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 007871 518 NIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 518 ~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.++...|++++|...|++..+.
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 8889999999999999999764
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.88 E-value=3.7e-08 Score=101.51 Aligned_cols=147 Identities=13% Similarity=-0.014 Sum_probs=96.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHH
Q 007871 320 VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCF 396 (586)
Q Consensus 320 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~ 396 (586)
.|++++|...++...+.. +.+...+..+...|...|++++|.+.+++..+ .+...+..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467777888887776654 33566777788888888888888888877653 35667777888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc---CCHHHHHHHHHhC
Q 007871 397 AQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA---GELEQALNIVESM 470 (586)
Q Consensus 397 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 470 (586)
++..+.. +.+...+..+..++...|++++|.+.+++..+. .+.+...+..++.++... |++++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8877742 334567777888888888888888888887772 344667777788888888 8888888887766
No 114
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.87 E-value=9e-08 Score=89.32 Aligned_cols=163 Identities=9% Similarity=-0.083 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCC--CCC--h
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD------LIFLGVLIACSHSGLATEGYRIFQSMKRHCGI--EPK--L 444 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~--~ 444 (586)
.+...+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|...+++....... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4445667788889999999999887774222 22 12344556677888999999999988752111 111 4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------C
Q 007871 445 EHYSCLVDLLSRAGELEQALNIVESMP----MKPN-----LALWGTLLLACRNHQNVTLAEVVVEGLVELKAD------D 509 (586)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~ 509 (586)
.+++.++..|...|++++|..+++++- ..|+ ..++..+...|...|++++|+..++++++..+. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 578889999999999999999988761 1122 257888888999999999999999999886422 1
Q ss_pred cchHHHHHHHHHhcCCchHH-HHHHHHHHh
Q 007871 510 CGLYVLLSNIYADAGMWEHA-LRIRKMMRK 538 (586)
Q Consensus 510 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 538 (586)
..++..++.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788999999999999999 777887654
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.87 E-value=5.3e-08 Score=86.84 Aligned_cols=185 Identities=13% Similarity=-0.020 Sum_probs=131.4
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCH----hHHH
Q 007871 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD--MIVQTALIDMYMKCGSLDEARRIFYSMTK--KNV----ISYN 377 (586)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~ 377 (586)
+...+......+...|++++|...|+.+.+...... ...+..+..+|.+.|++++|...|+.+.+ |+. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344566677788999999999999999988753222 35677889999999999999999998763 322 2455
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhHHhh
Q 007871 378 VMIAGLGM------------------NGFGEEALKCFAQMETEGIPKDDL-IFLGVLIACSHSGLATEGYRIFQSMKRHC 438 (586)
Q Consensus 378 ~l~~~~~~------------------~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 438 (586)
.+..++.. .|++++|+..|+++++. .|+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 55555554 57899999999999884 45432 2211110 001111111
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc
Q 007871 439 GIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPN----LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511 (586)
Q Consensus 439 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 511 (586)
.....++..|.+.|++++|+..|+++ ...|+ ...+..+..++.+.|++++|+..++.+....|.+..
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12235678899999999999999887 22343 256778888899999999999999999988887654
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.86 E-value=7.5e-08 Score=84.99 Aligned_cols=131 Identities=11% Similarity=-0.034 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 007871 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453 (586)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (586)
..+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...+++.... .+.+...+..++.+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 34556677778888888888888766 3567788888888888888888888888888772 35567788888888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-----------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 454 LSRAGELEQALNIVESM-PMKP-----------------NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 454 ~~~~g~~~~A~~~~~~~-~~~p-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
|...|++++|.+.+++. ...| ....+..+..++...|++++|...++++.+..|.+.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 88888888888888776 1112 226677777778888888888888888888888763
No 117
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.85 E-value=1.8e-08 Score=82.43 Aligned_cols=97 Identities=12% Similarity=-0.042 Sum_probs=80.1
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+...+..++..+...|++++|...|++. ...| +...|..+..++...|++++|+..|+++++.+|.++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4456667778888888888888888876 2233 6777888888888899999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007871 521 ADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 521 ~~~g~~~~A~~~~~~m~~~ 539 (586)
...|++++|...+++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999888764
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.85 E-value=4e-08 Score=83.80 Aligned_cols=156 Identities=10% Similarity=-0.034 Sum_probs=113.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhc
Q 007871 345 QTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA-CSH 420 (586)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~ 420 (586)
+..+...+...|++++|...|+...+ .+...+..+...+...|++++|+..+++.... .|++.....+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 44566677788889999998888873 46677888888888899999999988887663 3444333222211 122
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChHHHH
Q 007871 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPN---LALWGTLLLACRNHQNVTLAE 496 (586)
Q Consensus 421 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a~ 496 (586)
.+....|...+++..+ ..+.+...+..++.++...|++++|...++++ ...|+ ...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2233346788888877 34456788888999999999999999998876 44443 557888888899999999999
Q ss_pred HHHHHHHh
Q 007871 497 VVVEGLVE 504 (586)
Q Consensus 497 ~~~~~~~~ 504 (586)
..|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887754
No 119
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.84 E-value=1.7e-08 Score=95.02 Aligned_cols=196 Identities=9% Similarity=-0.048 Sum_probs=148.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 007871 320 VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399 (586)
Q Consensus 320 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 399 (586)
.|++++|..+++...+.... . .+...++++.|...|.. ....|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 56778888888877654221 1 01115788888888765 356788899999999999987
Q ss_pred HHC----CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhh---CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 400 ETE----GIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHC---GIEP-KLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 400 ~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
... |-.+. ..+|..+..+|...|++++|...+++...-. +.+. ...++..+..+|.. |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 652 21111 2478888899999999999999999877621 1111 24678889999988 9999999999876
Q ss_pred C----C--CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 471 P----M--KP--NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC------GLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 471 ~----~--~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
- . .+ ...++..+...+...|++++|+..++++++..|.+. ..+..++.++...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 1 11 146778888899999999999999999999865543 36777888899999999999999998
Q ss_pred H
Q 007871 537 R 537 (586)
Q Consensus 537 ~ 537 (586)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.84 E-value=5.3e-08 Score=81.99 Aligned_cols=127 Identities=10% Similarity=-0.052 Sum_probs=101.4
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PM-KPNLALWGTLLLACR 487 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~ 487 (586)
.+..+...+...|++++|...++...+ ..+.+...+..++.++...|++++|.+.+++. .. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456666677778888888888888777 23456777888888888888888888888776 22 336778888888899
Q ss_pred hcCChHHHHHHHHHHHhcCCCCcchHHHHHHH--HHhcCCchHHHHHHHHHHh
Q 007871 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNI--YADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 488 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 538 (586)
..|++++|...++++.+..|.++..+..+..+ +.+.|++++|...+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999998888555444 8889999999999887643
No 121
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.84 E-value=3.3e-08 Score=84.48 Aligned_cols=119 Identities=10% Similarity=0.139 Sum_probs=81.2
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHhcCCh--H
Q 007871 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMK-PNLALWGTLLLA-CRNHQNV--T 493 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~-~~~~~~~--~ 493 (586)
...|++++|...++...+ ..+.+...+..++.+|...|++++|...+++. ... .+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 445666777777777666 23445667777777777777777777777665 122 255666666666 6677777 8
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 494 LAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 494 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+|+..++++++.+|.++..+..++.+|...|++++|...++++.+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888888888888888888888888888888888888877664
No 122
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.83 E-value=1e-06 Score=81.44 Aligned_cols=219 Identities=11% Similarity=0.005 Sum_probs=101.3
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--ChhHHHHHHHHHHHcCCCCchhHHHHHHHHH----HhcCCHH
Q 007871 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG--ALDLGKWIHVFMKRSRITMDMIVQTALIDMY----MKCGSLD 359 (586)
Q Consensus 286 ~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~ 359 (586)
...++|+.+++.++..+ +-+...++.--.++...+ +++++...++.+.....+ +..+++.-..++ ...+
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~--- 121 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN--- 121 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc---
Confidence 33457777777777653 333444555555555555 666666666666665422 222333222222 2220
Q ss_pred HHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHH--HHHHHHHHhHHh
Q 007871 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT--EGYRIFQSMKRH 437 (586)
Q Consensus 360 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~ 437 (586)
..+++++++.+++++.+. -+-+...|+.-.-++...|.++ ++++.++++.+
T Consensus 122 -------------------------~~~~~~~EL~~~~~~l~~-~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~- 174 (306)
T 3dra_A 122 -------------------------NDFDPYREFDILEAMLSS-DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID- 174 (306)
T ss_dssp -------------------------TCCCTHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-
T ss_pred -------------------------ccCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH-
Confidence 003444444444444442 1223334443333333444444 44444444444
Q ss_pred hCCCCChHHHHHHHHHHhhcCC------HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcC--
Q 007871 438 CGIEPKLEHYSCLVDLLSRAGE------LEQALNIVESM-PMK-PNLALWGTLLLACRNHQNV-TLAEVVVEGLVELK-- 506 (586)
Q Consensus 438 ~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~-- 506 (586)
..+-|...|+.-..++.+.|+ ++++++.++++ ... -|...|+.+...+...|+. +.+..+++++.+.+
T Consensus 175 -~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 253 (306)
T 3dra_A 175 -TDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKD 253 (306)
T ss_dssp -HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT
T ss_pred -hCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC
Confidence 123344444444444433333 44444444433 112 2444554444444444442 22334444444443
Q ss_pred -CCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 507 -ADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 507 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
|.++.++..++.+|.+.|+.++|.++++.+.
T Consensus 254 ~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 254 QVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp EESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 4455555555555555555555555555554
No 123
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.81 E-value=5.2e-08 Score=77.79 Aligned_cols=119 Identities=9% Similarity=-0.002 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 007871 444 LEHYSCLVDLLSRAGELEQALNIVESM-PMK-PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521 (586)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 521 (586)
...+..++..+.+.|++++|+..|++. ... .+...|..+..++...|++++|+..++++++.+|.++..+..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 445667777888888888888888776 223 367788888888889999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCCCccCCCeeEEEECCeEeEEecCCCCCCChhHHHHHHHHHHHH
Q 007871 522 DAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKT 582 (586)
Q Consensus 522 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 582 (586)
..|++++|...+++..+.... ....|...++...|.++..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~--------------------~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAE--------------------VNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH--------------------HHTTTTHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcc--------------------cCCchhHHHHHHHHHHHHHh
Confidence 999999999999888764311 01237777777777776654
No 124
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.80 E-value=2.2e-06 Score=85.69 Aligned_cols=367 Identities=11% Similarity=0.004 Sum_probs=208.3
Q ss_pred cCC-CchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-hhHH
Q 007871 89 QSS-NPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH-MGCA 166 (586)
Q Consensus 89 ~~~-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a 166 (586)
+.| +...|..+|+.+... -|. ++++.+..+|+..+.. .|++..|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377788888877664 232 8899999999988873 4788888888888777664 2344
Q ss_pred HHHhccCC------CCChhhHHHHHHHHH----hCCChhHHHHHHhhCC-CCChhHHHHHHHHHh--hccCCHHHHHHHH
Q 007871 167 RSVFEGSE------IKDLVSWNLVLRGFV----ECGEMGKAREVFDEMP-QKDAISWSIMIDGYR--KKKGDISSARILF 233 (586)
Q Consensus 167 ~~~~~~~~------~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~-~~~~~~~~~ll~~~~--~~~g~~~~a~~~~ 233 (586)
..+|+... ..+...|...+..+. ..|+.+.+..+|++.. .|.. ....+...|. ....+...+..++
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~-~~~~lw~~Y~~fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMG-SLSELWKDFENFELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCT-THHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhh-hHHHHHHHHHHHHHHhccccHHHHH
Confidence 44554322 235566777666543 2356777777877776 2211 1112211110 1111122222222
Q ss_pred HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhCC--C-----chHHHHHHHHHHHCC
Q 007871 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE----RNVFSWSIMIDGYAQHG--N-----PKEALYLFREMLCQG 302 (586)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~--~-----~~~A~~~~~~m~~~g 302 (586)
.+.. +.+..|..+++.+.. .+...|...+.--...+ - .+.+..+|++++...
T Consensus 147 ~~~~-----------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~ 209 (493)
T 2uy1_A 147 GDTL-----------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF 209 (493)
T ss_dssp HHHH-----------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHh-----------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC
Confidence 2110 112222222222211 13345555444432221 1 245677888887753
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH-HHHHHhccC------------
Q 007871 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE-ARRIFYSMT------------ 369 (586)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~------------ 369 (586)
+.+...|...+.-+...|+++.|..+++..... +.+...+.. |+...+.++ ...+.+...
T Consensus 210 -p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 210 -YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcc
Confidence 555667777777777888899999999888887 333333322 222111111 111221110
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh-ccCCHHHHHHHHHHhHHhhCCCCChHHHH
Q 007871 370 KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS-HSGLATEGYRIFQSMKRHCGIEPKLEHYS 448 (586)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 448 (586)
......|...+....+.++.+.|..+|++. .. ...+...|......-. ..++.+.|..+|+...+. .+.++..+.
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~--~~~~~~~~~ 358 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK--HPDSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CCCCHHHHH
Confidence 011245666666666778889999999888 32 1234444433222212 234688999999998884 333455666
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 449 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
..++.....|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.+
T Consensus 359 ~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 359 EFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67777788899999999999883 3567787777777788998888888888775
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.80 E-value=6.6e-08 Score=77.85 Aligned_cols=116 Identities=12% Similarity=0.002 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 007871 408 DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLA 485 (586)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 485 (586)
...+..+...+...|++++|...+++..+ ..+.+...+..++.+|...|++++|.+.+++. . .+.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34566666667777777777777777666 23445666777777777777777777777665 2 22356777778888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 007871 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM 525 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 525 (586)
+...|++++|+..++++.+.+|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888999999999999999999888888888888887764
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.80 E-value=7.3e-08 Score=77.23 Aligned_cols=117 Identities=10% Similarity=-0.061 Sum_probs=95.2
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PM-KPNLALWGTLLLAC 486 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~ 486 (586)
..+..+...+...|++++|...++++... .+.+...+..++.++...|++++|.+.+++. .. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45666777777888888888888888772 3456777888888888888888888888776 22 23577888888889
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 007871 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWE 527 (586)
Q Consensus 487 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 527 (586)
...|++++|...++++.+..|.++..+..++.++.+.|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999888763
No 127
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.78 E-value=3.4e-07 Score=80.64 Aligned_cols=174 Identities=8% Similarity=-0.113 Sum_probs=116.7
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-CCHhHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 007871 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK-KNVISYNVMIAGLGMNG----FGEEALKCFAQME 400 (586)
Q Consensus 326 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~A~~~~~~m~ 400 (586)
|...|+...+.| ++..+..+...|...+++++|...|++..+ .++..+..+...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444455554443 445555566666666667777666666553 355566666666666 5 7888888888877
Q ss_pred HCCCCCCHHHHHHHHHHhhc----cCCHHHHHHHHHHhHHhhCCC-CChHHHHHHHHHHhh----cCCHHHHHHHHHhCC
Q 007871 401 TEGIPKDDLIFLGVLIACSH----SGLATEGYRIFQSMKRHCGIE-PKLEHYSCLVDLLSR----AGELEQALNIVESMP 471 (586)
Q Consensus 401 ~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 471 (586)
+.| +...+..|...|.. .+++++|..+|++..+. +.. .++..+..|..+|.. .+++++|...|++..
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 654 55667777777766 77888888888887662 211 126777788888877 778888888888773
Q ss_pred -CCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhcCC
Q 007871 472 -MKPNLALWGTLLLACRNH-Q-----NVTLAEVVVEGLVELKA 507 (586)
Q Consensus 472 -~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~p 507 (586)
..++...+..+...|... | ++++|..+|+++.+.+.
T Consensus 157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 224555666676666542 3 88999999998887753
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.78 E-value=3.1e-07 Score=80.96 Aligned_cols=129 Identities=9% Similarity=-0.053 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCC
Q 007871 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423 (586)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 423 (586)
.+..+...+...|++++|...|++...++...+..+...|...|++++|+..+++..... +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345566777788888888888888877777888888888888888888888888877742 3455677778888888888
Q ss_pred HHHHHHHHHHhHHhhCCCCCh----------------HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 007871 424 ATEGYRIFQSMKRHCGIEPKL----------------EHYSCLVDLLSRAGELEQALNIVESM-PMKPN 475 (586)
Q Consensus 424 ~~~A~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 475 (586)
+++|...++.+.+. .+.+. ..+..++.+|...|++++|.+.+++. ...|+
T Consensus 87 ~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 88888888888772 22222 67777888888888888888888776 44454
No 129
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.78 E-value=5.6e-06 Score=76.47 Aligned_cols=233 Identities=9% Similarity=-0.067 Sum_probs=160.5
Q ss_pred HHHhcCC-HHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCC--CchHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hc
Q 007871 250 GYAKIGD-LVAAQQLFNEMPE--R-NVFSWSIMIDGYAQHG--NPKEALYLFREMLCQGVRPDVISVMGAISAC----AQ 319 (586)
Q Consensus 250 ~~~~~g~-~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~----~~ 319 (586)
+..+.|. .++|++.++.+.. | +..+|+.-..++...| ++++++..++.+.... +-+...|+.--..+ ..
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHh
Confidence 3344454 4789999999875 3 4567888888888888 9999999999999864 33334444333333 23
Q ss_pred c---CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChH--HHHH
Q 007871 320 V---GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE--EALK 394 (586)
Q Consensus 320 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~ 394 (586)
. ++++++..+++.+.+.. ..+..+|+.-.-.+.+.|.++ ++++
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~--------------------------------pkny~aW~~R~~vl~~l~~~~~~~EL~ 167 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSD--------------------------------PKNHHVWSYRKWLVDTFDLHNDAKELS 167 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHhC--------------------------------CCCHHHHHHHHHHHHHhcccChHHHHH
Confidence 3 45555555555555443 123344444444444555555 7777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhccCC------HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHH-HHHHH
Q 007871 395 CFAQMETEGIPKDDLIFLGVLIACSHSGL------ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ-ALNIV 467 (586)
Q Consensus 395 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~ 467 (586)
.++++.+.. .-|...|+.-...+...|. ++++++.++.++. ..+-|...|+.+...+.+.|+..+ +.++.
T Consensus 168 ~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 168 FVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFS 244 (306)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHH
Confidence 888887742 3355666666666666665 8888999888888 456688888888888888887544 55566
Q ss_pred HhCC-C----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCcchHHHHHH
Q 007871 468 ESMP-M----KPNLALWGTLLLACRNHQNVTLAEVVVEGLVE-LKADDCGLYVLLSN 518 (586)
Q Consensus 468 ~~~~-~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~ 518 (586)
.+.- . ..++..+..+...+.+.|+.++|.++++.+.+ .+|.....|...+.
T Consensus 245 ~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 245 LQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 6652 1 34778888888889999999999999999997 78998888876654
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.78 E-value=1.3e-07 Score=75.00 Aligned_cols=115 Identities=16% Similarity=0.113 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 007871 408 DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLA 485 (586)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 485 (586)
...+..+...+...|++++|...++++.+. .+.+...+..++.++...|++++|..+++++ . .+.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345666777777778888888888877762 3445677777888888888888888888766 1 23466777888888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 007871 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 524 (586)
+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 889999999999999999999999988888888876654
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=3e-08 Score=91.80 Aligned_cols=189 Identities=10% Similarity=-0.109 Sum_probs=120.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007871 342 MIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418 (586)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 418 (586)
...+..+...+...|++++|...|+... ..+...|..+...|...|++++|+..+++..+. .+.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-DGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 3455566666777777777777777654 235667777777788888888888888877763 123456777777788
Q ss_pred hccCCHHHHHHHHHHhHHhhCC---CCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 007871 419 SHSGLATEGYRIFQSMKRHCGI---EPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLA 495 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 495 (586)
...|++++|...|++..+...- ......+..+ ...+...+.. .......++......+. .+ ..|++++|
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l~-~l-~~~~~~~A 154 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYLT-RL-IAAERERE 154 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHHH-HH-HHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHHH-HH-HHHHHHHH
Confidence 8888888888888877652100 0011111111 1122212211 22222333444333332 22 26899999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhc-CCchHHHHHHHHHHhC
Q 007871 496 EVVVEGLVELKADDCGLYVLLSNIYADA-GMWEHALRIRKMMRKR 539 (586)
Q Consensus 496 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 539 (586)
++.++++.+.+|.+......+...+.+. +++++|.++|.++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999888888888777776 7789999999888653
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.72 E-value=1.3e-07 Score=89.97 Aligned_cols=126 Identities=10% Similarity=-0.024 Sum_probs=97.5
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC---------------hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK---------------LEHYSCLVDLLSRAGELEQALNIVESM-PMK 473 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 473 (586)
.+..+...+...|++++|...|++.... .+.+ ...|..++.+|.+.|++++|+..++++ ...
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4444455555555555555555555541 1111 467888999999999999999999877 233
Q ss_pred -CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH-HHHHHHHH
Q 007871 474 -PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA-LRIRKMMR 537 (586)
Q Consensus 474 -p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 537 (586)
.+...+..+..++...|++++|+..|+++++++|.++.++..++.++.+.|++++| ...++.|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888889999999999999999999999999999999999999999999999998 45666664
No 133
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.68 E-value=1.7e-07 Score=78.74 Aligned_cols=109 Identities=14% Similarity=0.008 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 007871 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLL 484 (586)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 484 (586)
+...+..+...+...|++++|...|++..+ ..+.+...+..++.+|...|++++|+..+++. ...| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345677788888888999999999988887 24457788888888888889999998888876 2334 5778888888
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 485 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
++...|++++|+..|+++++++|.++..+...+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 888888999999999998888888888665544
No 134
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.67 E-value=3.2e-06 Score=78.71 Aligned_cols=158 Identities=13% Similarity=-0.004 Sum_probs=119.8
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCC---CH------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 007871 348 LIDMYMKCGSLDEARRIFYSMTKK---NV------ISYNVMIAGLGMNGFGEEALKCFAQMETEGIP-KD----DLIFLG 413 (586)
Q Consensus 348 l~~~~~~~g~~~~a~~~~~~~~~~---~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 413 (586)
.+..+...|++++|...++...+. +. ..+..+...+...|++++|+..+++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466778899999999999876531 11 12334666777888999999999999873222 22 236889
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhh----CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 007871 414 VLIACSHSGLATEGYRIFQSMKRHC----GIEP-KLEHYSCLVDLLSRAGELEQALNIVESM-------PMKPN-LALWG 480 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 480 (586)
+..+|...|++++|...++++.+.. +..+ ...++..++.+|.+.|++++|.+++++. ...+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999988521 1122 2347888999999999999999998876 12222 67888
Q ss_pred HHHHHHHhcC-ChHHHHHHHHHHHhc
Q 007871 481 TLLLACRNHQ-NVTLAEVVVEGLVEL 505 (586)
Q Consensus 481 ~l~~~~~~~~-~~~~a~~~~~~~~~~ 505 (586)
.+..++...| ++++|...++++.+.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8888999999 469999999998874
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.67 E-value=1.1e-07 Score=78.27 Aligned_cols=116 Identities=15% Similarity=0.020 Sum_probs=91.2
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 007871 396 FAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMK 473 (586)
Q Consensus 396 ~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 473 (586)
++++.. ..|+. ..+..+...+...|++++|...|+.+.. ..+.+...|..++.+|...|++++|+..|++. ...
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 444443 34433 4667777788889999999999998887 34557888888999999999999999999877 233
Q ss_pred C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHH
Q 007871 474 P-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515 (586)
Q Consensus 474 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 515 (586)
| ++..+..+..++...|++++|+..|+++++..|.++.....
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 3 66778888888999999999999999999999988876443
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.66 E-value=3.1e-07 Score=82.83 Aligned_cols=123 Identities=11% Similarity=-0.014 Sum_probs=72.4
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhc
Q 007871 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL----ALWGTLLLACRNH 489 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~ 489 (586)
+...+...|++++|.++|+.+.. + .|+......+...+.+.|++++|+..|+.....|+. ..+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~--~-~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPV--A-GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCC--T-TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh--c-CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 44455666677777766666654 1 232224445555666677777777777655333322 2455555666677
Q ss_pred CChHHHHHHHHHHHhcC--CC-CcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 490 QNVTLAEVVVEGLVELK--AD-DCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 490 ~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
|++++|+..|+++.... |. .+......+.++.+.|+.++|...|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 77777777777666432 32 3345666666677777777777777766654
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.65 E-value=5e-07 Score=72.51 Aligned_cols=99 Identities=11% Similarity=0.024 Sum_probs=89.8
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 007871 441 EPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSN 518 (586)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 518 (586)
+.+...+..++..+...|++++|...+++. ...| +...+..+...+...|++++|+..++++.+..|.++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 445678889999999999999999999987 3444 78888899999999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHhC
Q 007871 519 IYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 519 ~~~~~g~~~~A~~~~~~m~~~ 539 (586)
++...|++++|...+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 138
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.63 E-value=1.9e-07 Score=72.34 Aligned_cols=100 Identities=13% Similarity=0.045 Sum_probs=81.2
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CcchHHHHHH
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD--DCGLYVLLSN 518 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 518 (586)
+...+..++..+...|++++|...+++. . .+.+...+..+...+...|++++|+..++++.+..|. ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4456667777888888888888888766 2 2335677788888888899999999999999999998 8899999999
Q ss_pred HHHhc-CCchHHHHHHHHHHhCCCc
Q 007871 519 IYADA-GMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 519 ~~~~~-g~~~~A~~~~~~m~~~~~~ 542 (586)
++... |++++|.+.+++..+....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999 9999999999988776543
No 139
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.62 E-value=6.6e-07 Score=69.96 Aligned_cols=92 Identities=17% Similarity=0.010 Sum_probs=43.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 007871 447 YSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 524 (586)
+..++..+...|++++|...+++. . .+.+...+..+...+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 334444444444444444444443 1 11234444444444445555555555555555555555555555555555555
Q ss_pred CchHHHHHHHHHHh
Q 007871 525 MWEHALRIRKMMRK 538 (586)
Q Consensus 525 ~~~~A~~~~~~m~~ 538 (586)
++++|...+++..+
T Consensus 87 ~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 87 RFEEAKRTYEEGLK 100 (118)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555554443
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.61 E-value=5.7e-07 Score=73.88 Aligned_cols=105 Identities=11% Similarity=-0.011 Sum_probs=87.4
Q ss_pred CCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 007871 404 IPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWG 480 (586)
Q Consensus 404 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 480 (586)
+.|+. ..+..+...+...|++++|...|+++.. -.|.+...|..++.+|...|++++|++.|++. ...| ++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 34443 4677788888999999999999999988 34567888999999999999999999999887 3334 577888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 481 TLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 481 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
.+..++...|++++|+..|++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 899999999999999999999999988765
No 141
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.61 E-value=4.4e-08 Score=79.59 Aligned_cols=63 Identities=13% Similarity=-0.015 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCCcchH----HHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 477 ALWGTLLLACRNHQNVTLAEVVVEGLVEL-------KADDCGLY----VLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 477 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
..|..+..++.+.|++++|+..+++++++ +|+++..| +..+.++...|++++|+..|++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 37888888888999999999999999998 99999999 99999999999999999999998763
No 142
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.61 E-value=6.3e-07 Score=70.07 Aligned_cols=110 Identities=13% Similarity=-0.021 Sum_probs=83.8
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLAC 486 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 486 (586)
..+..+...+...|++++|...++.... ..+.+...+..++.++...|++++|...+++. ...| +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4556666677777888888888877776 23446677777888888888888888887766 2223 577778888888
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 487 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
...|++++|...++++.+.+|.++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 8999999999999999999999888887776654
No 143
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.61 E-value=1.8e-07 Score=73.92 Aligned_cols=95 Identities=15% Similarity=0.072 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 007871 446 HYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA 523 (586)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 523 (586)
.+..++..+.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|.++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3556778888999999999999887 3334 7888888888899999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 007871 524 GMWEHALRIRKMMRKRK 540 (586)
Q Consensus 524 g~~~~A~~~~~~m~~~~ 540 (586)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987643
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.61 E-value=3.2e-07 Score=79.85 Aligned_cols=96 Identities=9% Similarity=-0.070 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007871 445 EHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522 (586)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 522 (586)
..+..++.+|...|++++|+..+++. . .+.+...+..+..++...|++++|+..|+++++.+|.++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56777888888889999998888876 2 234677888888899999999999999999999999999999999999999
Q ss_pred cCCchHHH-HHHHHHHhCC
Q 007871 523 AGMWEHAL-RIRKMMRKRK 540 (586)
Q Consensus 523 ~g~~~~A~-~~~~~m~~~~ 540 (586)
.|+..++. ..+..|...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 88888777 5566554443
No 145
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.61 E-value=4.5e-07 Score=73.38 Aligned_cols=98 Identities=10% Similarity=0.002 Sum_probs=79.1
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 007871 442 PKLEHYSCLVDLLSRAGELEQALNIVESM-PM-KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519 (586)
Q Consensus 442 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 519 (586)
.+...+..++..+...|++++|...|++. .. +.+...+..+..++...|++++|+..++++++.+|.++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45667777778888888888888887765 22 23567778888888888888899999999988888888889999999
Q ss_pred HHhcCCchHHHHHHHHHHhC
Q 007871 520 YADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 520 ~~~~g~~~~A~~~~~~m~~~ 539 (586)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999888888764
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.60 E-value=2.5e-07 Score=78.84 Aligned_cols=128 Identities=9% Similarity=0.046 Sum_probs=101.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH-HhhcCCH--
Q 007871 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL-LSRAGEL-- 460 (586)
Q Consensus 384 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 460 (586)
...|++++|+..+++.... .+.+...+..+..+|...|++++|...++++.+. .+.+...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH-CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 4567888899999888774 2446678888899999999999999999998883 34567788888888 7789998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHH
Q 007871 461 EQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYV 514 (586)
Q Consensus 461 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 514 (586)
++|...++++ ...| +...+..+...+...|++++|...++++.+..|.++....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 9999999877 2334 5778888888899999999999999999999999876543
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.59 E-value=4.4e-07 Score=72.28 Aligned_cols=111 Identities=8% Similarity=-0.073 Sum_probs=85.7
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLAC 486 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 486 (586)
..+..+...+...|++++|...|++..+ -.+.+...+..++.+|...|++++|+..+++. ...| +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4566666777788888888888888777 24556778888888888888888888888776 2333 577788888888
Q ss_pred HhcCChHHHHHHHHHHHhcC------CCCcchHHHHHHHHH
Q 007871 487 RNHQNVTLAEVVVEGLVELK------ADDCGLYVLLSNIYA 521 (586)
Q Consensus 487 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 521 (586)
...|++++|+..++++.+.+ |.++.++..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 89999999999999999988 888777777766543
No 148
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=1.3e-06 Score=71.69 Aligned_cols=95 Identities=14% Similarity=0.057 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 007871 444 LEHYSCLVDLLSRAGELEQALNIVESM-PMKPN----LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSN 518 (586)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 518 (586)
...+..++..+...|++++|.+.+++. ...|+ ...+..+...+...|++++|+..++++.+..|.++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 344444555555555555555555544 23343 3444445555555555555555555555555555555555555
Q ss_pred HHHhcCCchHHHHHHHHHHh
Q 007871 519 IYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 519 ~~~~~g~~~~A~~~~~~m~~ 538 (586)
+|...|++++|...+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555666666555555544
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.58 E-value=2.6e-07 Score=73.71 Aligned_cols=94 Identities=11% Similarity=0.059 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc-------hHHH
Q 007871 445 EHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG-------LYVL 515 (586)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~ 515 (586)
..+..++..+.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..++++++++|.+.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34566777777788888888777765 2333 5677777777788888888888888888887766543 5666
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 007871 516 LSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 516 l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
++.++...|++++|++.|++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77778888888888888887755
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.58 E-value=7.7e-07 Score=77.63 Aligned_cols=129 Identities=13% Similarity=0.002 Sum_probs=60.7
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhh---CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCC-C----H
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRHC---GIEP-KLEHYSCLVDLLSRAGELEQALNIVESMP----MKP-N----L 476 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p-~----~ 476 (586)
.+..+...+...|++++|...+++..... +.++ ...++..++..|...|++++|.+.+++.- ..+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 34444444444444444444444443310 1111 12344445555555555555555544330 011 1 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCc----chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELK--ADDC----GLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 477 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
..+..+...+...|++++|+..++++.+.. ..++ .++..++.++...|++++|.+.+++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 234444555556666666666666655432 1111 2245566666666666666666665543
No 151
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.57 E-value=1.7e-06 Score=80.61 Aligned_cols=162 Identities=11% Similarity=-0.053 Sum_probs=117.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC---CCH------hHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HH
Q 007871 344 VQTALIDMYMKCGSLDEARRIFYSMTK---KNV------ISYNVMIAGLGMNGFGEEALKCFAQMETEG---IPKD--DL 409 (586)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g---~~p~--~~ 409 (586)
.+...+..+...|++++|.+.+....+ ... ..+..+...+...|++++|+..+++..... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344566777888899998888875431 111 223445566778889999999999887532 1122 34
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhCC-------CCC-CH
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK-----LEHYSCLVDLLSRAGELEQALNIVESMP-------MKP-NL 476 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p-~~ 476 (586)
+++.+...|...|++++|...++++.+.....|+ ..++..++.+|...|++++|.+++++.- ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999998731111122 2588889999999999999999988761 111 25
Q ss_pred HHHHHHHHHHHhcCChHHH-HHHHHHHHhc
Q 007871 477 ALWGTLLLACRNHQNVTLA-EVVVEGLVEL 505 (586)
Q Consensus 477 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 505 (586)
.++..+...+...|++++| ...++++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888889999999999 8888888764
No 152
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.57 E-value=7.8e-07 Score=80.22 Aligned_cols=136 Identities=12% Similarity=-0.025 Sum_probs=86.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC--hHHHHHHHHHH
Q 007871 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK--LEHYSCLVDLL 454 (586)
Q Consensus 377 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 454 (586)
-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 33455566666777777666665552 344334444445667777777777777655431 1 111 23566677778
Q ss_pred hhcCCHHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 455 SRAGELEQALNIVESMPMK---P--NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 455 ~~~g~~~~A~~~~~~~~~~---p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
...|++++|+..|++.... | ..........++.+.|+.++|...|+++...+|. +.++..|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 8888888888888776211 3 2345566666778888888888888888888887 66555553
No 153
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.57 E-value=4.5e-07 Score=75.95 Aligned_cols=63 Identities=11% Similarity=0.057 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 476 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
...|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 356666777777788888888888888888888888888888888888888888888877765
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.57 E-value=1.3e-06 Score=68.96 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 007871 444 LEHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521 (586)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 521 (586)
...+..++..+...|++++|.+.++++ . .+.+...+..+...+...|++++|+.+++++.+..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999887 2 23467888889999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhC
Q 007871 522 DAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 522 ~~g~~~~A~~~~~~m~~~ 539 (586)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.56 E-value=4.2e-07 Score=74.23 Aligned_cols=107 Identities=15% Similarity=-0.052 Sum_probs=83.7
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLAC 486 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 486 (586)
..+..+...+...|++++|...|+.+.. ..+.+...|..++.+|...|++++|+..|++. ...| ++..+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3555666677888888888888888877 34557778888888888888888888888876 2233 567777888889
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 487 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
...|++++|+..|+++++..|.++.......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 9999999999999999999998887665544
No 156
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.56 E-value=9.5e-07 Score=70.52 Aligned_cols=98 Identities=11% Similarity=-0.011 Sum_probs=88.1
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 007871 442 PKLEHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519 (586)
Q Consensus 442 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 519 (586)
.+...+..++..+...|++++|...+++. . .+.+...+..+...+...|++++|+..++++.+..|.++..+..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34567888899999999999999999987 2 234678888899999999999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHhC
Q 007871 520 YADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 520 ~~~~g~~~~A~~~~~~m~~~ 539 (586)
+...|++++|...+++..+.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999998774
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.55 E-value=7.7e-07 Score=74.71 Aligned_cols=94 Identities=12% Similarity=-0.077 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 007871 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453 (586)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (586)
..+..+...+...|++++|+..|++..... +.+...+..+..+|...|++++|...+++..+ -.+.+...|..++.+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 344445555555555555555555555421 22344555555555555555555555555555 123344555555555
Q ss_pred HhhcCCHHHHHHHHHhC
Q 007871 454 LSRAGELEQALNIVESM 470 (586)
Q Consensus 454 ~~~~g~~~~A~~~~~~~ 470 (586)
|...|++++|...|++.
T Consensus 89 ~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHH
Confidence 55555555555555544
No 158
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.52 E-value=7.1e-07 Score=77.85 Aligned_cols=152 Identities=12% Similarity=0.013 Sum_probs=95.4
Q ss_pred hcCCHHHHHH---HHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHhhccCCHH
Q 007871 354 KCGSLDEARR---IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET----EGIPK-DDLIFLGVLIACSHSGLAT 425 (586)
Q Consensus 354 ~~g~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~g~~p-~~~~~~~l~~~~~~~g~~~ 425 (586)
..|++++|.+ .+..-.......+..+...+...|++++|...+++... .|..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 44332223445666667777777777777777776654 12222 1245666777777888888
Q ss_pred HHHHHHHHhHHhhCCCC-----ChHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCh
Q 007871 426 EGYRIFQSMKRHCGIEP-----KLEHYSCLVDLLSRAGELEQALNIVESMP----MKPN----LALWGTLLLACRNHQNV 492 (586)
Q Consensus 426 ~A~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~ 492 (586)
+|...+++......-.+ ....+..++.++...|++++|...+++.- ..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888877665211111 23456777788888888888888877651 1122 23346667778888888
Q ss_pred HHHHHHHHHHHhc
Q 007871 493 TLAEVVVEGLVEL 505 (586)
Q Consensus 493 ~~a~~~~~~~~~~ 505 (586)
++|...++++.+.
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888764
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.52 E-value=2.1e-07 Score=81.10 Aligned_cols=118 Identities=8% Similarity=-0.048 Sum_probs=84.8
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHH
Q 007871 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-N----------------LALWGT 481 (586)
Q Consensus 420 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~ 481 (586)
..|+++.+.+.|+.... ........+..++..+...|++++|+..|++. ...| + ...+..
T Consensus 16 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDE--EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp ------CCCSGGGCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHH--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 34445555444443222 11123345666677777777777777777665 1111 1 267888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+..++...|++++|+..++++++.+|.++.++..++.+|...|++++|...+++..+.
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999999999999999999998763
No 160
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.51 E-value=9.1e-05 Score=74.01 Aligned_cols=313 Identities=11% Similarity=-0.065 Sum_probs=170.5
Q ss_pred hHHHHHHHHHhhccCCHHHHHHHHHhCCC--CChhHHHHHHHHHHhcCC-HHHHHHHHhhCC------CCChhHHHHHHH
Q 007871 210 ISWSIMIDGYRKKKGDISSARILFEHMPI--KDLISWNSMIDGYAKIGD-LVAAQQLFNEMP------ERNVFSWSIMID 280 (586)
Q Consensus 210 ~~~~~ll~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~------~~~~~~~~~l~~ 280 (586)
..|...+..+ - .|+++.+..+|++... |++..|...+....+.++ .+....+|+... ..+...|...+.
T Consensus 16 ~vyer~l~~~-P-~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 16 AIMEHARRLY-M-SKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHH-H-TTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHC-C-CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 3455556555 3 3889999999988874 688888888888777764 344455555533 135677777776
Q ss_pred HHHh----CCCchHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHhccC--------------ChhHHHHHHHHHHHcCCCC
Q 007871 281 GYAQ----HGNPKEALYLFREMLCQGVRPD-V-ISVMGAISACAQVG--------------ALDLGKWIHVFMKRSRITM 340 (586)
Q Consensus 281 ~~~~----~~~~~~A~~~~~~m~~~g~~~~-~-~~~~~l~~~~~~~~--------------~~~~a~~~~~~~~~~~~~~ 340 (586)
.+.. .++.+.+..+|+..+.. ++. . ..|..... +.... .+..|..+++.+...-...
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFEN-FELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHH-HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHH-HHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 5542 35678899999999873 322 2 22222221 11111 1223344444333211011
Q ss_pred chhHHHHHHHHHHhc--CC-----HHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 007871 341 DMIVQTALIDMYMKC--GS-----LDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410 (586)
Q Consensus 341 ~~~~~~~l~~~~~~~--g~-----~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 410 (586)
+...|...+..-... |- .+.+..+|+.+.. .....|...+..+.+.|+.++|..++++.... |....
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~ 247 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMF 247 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSH
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHH
Confidence 233454444432221 10 2345567766552 45677888888888899999999999999886 44322
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhh---C-----C---CCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHHH
Q 007871 411 FLGVLIACSHSGLATEGYRIFQSMKRHC---G-----I---EPKLEHYSCLVDLLSRAGELEQALNIVESMPMK-PNLAL 478 (586)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-----~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~ 478 (586)
+......+...++ +++.+.... . . .....+|...+..+.+.|..+.|..+|+++..+ .+...
T Consensus 248 l~~~y~~~~e~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v 321 (493)
T 2uy1_A 248 LSLYYGLVMDEEA------VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHV 321 (493)
T ss_dssp HHHHHHHHTTCTH------HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHhhcchhH------HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHH
Confidence 2111111111111 122222110 0 0 001234555566666667777777777776211 13333
Q ss_pred HHHHHHHH-HhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 479 WGTLLLAC-RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 479 ~~~l~~~~-~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
|......- ...++.+.|..+|+.+.+..|.++..+...++...+.|+.+.|+.+++++
T Consensus 322 ~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 322 FIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43222221 12335777777777777776776666666666666667777776666664
No 161
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.50 E-value=2e-06 Score=72.04 Aligned_cols=128 Identities=12% Similarity=-0.048 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 007871 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453 (586)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (586)
..+..+...+...|++++|...|++.... .+.+...+..+..++...|++++|...+++..+ ..+.+...+..++.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHH
Confidence 34566677777888888888888887774 233567777788888888888888888888877 245567778888888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH--HHHHHhcCChHHHHHHHHHHHh
Q 007871 454 LSRAGELEQALNIVESM-PMKP-NLALWGTL--LLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 454 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
+...|++++|.+.++++ ...| +...+..+ ...+...|++++|...+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888776 2223 44444333 3336677888888888877655
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.48 E-value=1.2e-06 Score=70.92 Aligned_cols=113 Identities=9% Similarity=-0.143 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 007871 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLL 483 (586)
Q Consensus 406 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 483 (586)
.+...+..+...+...|++++|...|+.... ..+.+...+..++.+|...|++++|...+++. ...| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3556777777788888888888888888777 23456777888888888888888888888776 2233 577788888
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCC-----CcchHHHHHHHH
Q 007871 484 LACRNHQNVTLAEVVVEGLVELKAD-----DCGLYVLLSNIY 520 (586)
Q Consensus 484 ~~~~~~~~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~ 520 (586)
.++...|++++|+..++++.+..|. +..+...+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999888877 555555555443
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=2.3e-06 Score=70.08 Aligned_cols=112 Identities=8% Similarity=-0.077 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 007871 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK----LEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWG 480 (586)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 480 (586)
+...+..+...+...|++++|...|++..+ ..|+ ...+..++.+|...|++++|...+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 345566666666667777777777776655 2233 566667777777777777777777665 2223 567777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 007871 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521 (586)
Q Consensus 481 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 521 (586)
.+..++...|++++|...++++.+.+|.++.++..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 78888888899999999999999999998888877766543
No 164
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.43 E-value=0.00019 Score=66.98 Aligned_cols=175 Identities=8% Similarity=-0.086 Sum_probs=109.0
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-C-
Q 007871 280 DGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG-ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC-G- 356 (586)
Q Consensus 280 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 356 (586)
....+.+..++|++++++++..+ +-+...++.--.++...+ .++++..+++.+..... -+..+++.-..++.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCC
Confidence 33444555667888888888763 334445555555555566 47778888877776653 3455555555555554 5
Q ss_pred CHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCC--
Q 007871 357 SLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGE--------EALKCFAQMETEGIPKDDLIFLGVLIACSHSGL-- 423 (586)
Q Consensus 357 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-- 423 (586)
++++++++++.+.+ .+..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+...+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 67777777777764 34455555444444444444 7777888777742 3455667777666666665
Q ss_pred -----HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCC
Q 007871 424 -----ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459 (586)
Q Consensus 424 -----~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (586)
++++++.+++++. ..+-|...|+.+-..+.+.|+
T Consensus 219 ~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCC
Confidence 5777777777776 345566777666666666554
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.42 E-value=1.8e-06 Score=68.85 Aligned_cols=61 Identities=18% Similarity=0.032 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADD---CGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 478 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
.+..+..++...|++++|+..++++.+..|++ +.++..++.+|...|++++|...++++.+
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555 44455555555555555555555555544
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.42 E-value=2.7e-06 Score=67.87 Aligned_cols=94 Identities=11% Similarity=0.104 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-------cchHHH
Q 007871 445 EHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD-------CGLYVL 515 (586)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~ 515 (586)
..+..++..+...|++++|...+++. . .+.+...+..+...+...|++++|...++++.+..|.+ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45666777777777777777777765 1 23356777777778888888888888888888887766 778888
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 007871 516 LSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 516 l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
++.+|...|++++|...++++.+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999988876
No 167
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.40 E-value=5e-05 Score=70.88 Aligned_cols=214 Identities=11% Similarity=0.007 Sum_probs=155.5
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhccCC---CCHhHHHHHHHHHHhc-C-ChHHHHH
Q 007871 321 GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG-SLDEARRIFYSMTK---KNVISYNVMIAGLGMN-G-FGEEALK 394 (586)
Q Consensus 321 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~-~-~~~~A~~ 394 (586)
+..++|..++..++..+ +-+..+++.--.++...| .+++++.+++.+.. .+..+|+.-...+... + ++++++.
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 44567888888888876 335556676666677778 59999999998873 4667787776666665 6 8899999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhccCCHH--------HHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCC-------
Q 007871 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLAT--------EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE------- 459 (586)
Q Consensus 395 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------- 459 (586)
+++++.+. -+-|...|+.-.-++...|.++ ++++.++++.+ ..+-|...|+....++.+.++
T Consensus 147 ~~~k~L~~-dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLP-DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSS-CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccccchHH
Confidence 99999984 2445667766665555555555 89999999988 356688889988888888876
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh--------------------HHHHHHHHHHHhcC------CCCcc
Q 007871 460 LEQALNIVESM-PMKP-NLALWGTLLLACRNHQNV--------------------TLAEVVVEGLVELK------ADDCG 511 (586)
Q Consensus 460 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~~~~ 511 (586)
++++++.++++ ...| |...|+.+-..+.+.|+. .........+.... +.++.
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 68888888776 3344 788888877777766653 33444444443332 56778
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 512 LYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 512 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
++..++++|...|+.++|.++++.+.+
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 889999999999999999999999864
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.40 E-value=1.8e-06 Score=85.84 Aligned_cols=96 Identities=16% Similarity=0.019 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 007871 444 LEHYSCLVDLLSRAGELEQALNIVESM-PM-KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521 (586)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 521 (586)
...|..+..+|.+.|++++|+..++++ .. +.+...+..+..+|...|++++|+..|+++++++|.+..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467888899999999999999999877 22 3468888899999999999999999999999999999999999999999
Q ss_pred hcCCchHHHH-HHHHHHhC
Q 007871 522 DAGMWEHALR-IRKMMRKR 539 (586)
Q Consensus 522 ~~g~~~~A~~-~~~~m~~~ 539 (586)
+.|++++|.. .+++|..+
T Consensus 397 ~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999998864 56666443
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.40 E-value=8.6e-07 Score=88.53 Aligned_cols=119 Identities=9% Similarity=-0.058 Sum_probs=96.5
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 007871 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNV 492 (586)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 492 (586)
...+...|++++|.+.+++..+ ..+.+...+..++.+|.+.|++++|++.+++. ...| +...+..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3456678889999999988888 24456788888999999999999999998877 3344 678888888999999999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHH--HHhcCCchHHHHHHHH
Q 007871 493 TLAEVVVEGLVELKADDCGLYVLLSNI--YADAGMWEHALRIRKM 535 (586)
Q Consensus 493 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 535 (586)
++|+..++++.+.+|.++..+..++.+ +.+.|++++|.+.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999888 8899999999999873
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.37 E-value=4e-06 Score=66.81 Aligned_cols=110 Identities=4% Similarity=-0.094 Sum_probs=71.8
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCC----HHHHH
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP-----MKPN----LALWG 480 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~ 480 (586)
.+..+...+...|++++|...++..... .+.+...+..++.+|...|++++|...+++.- ..++ ...+.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4555555666666666666666666652 34455666666666677777777776666551 1122 55667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007871 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522 (586)
Q Consensus 481 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 522 (586)
.+...+...|++++|...++++.+..| ++.....+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 777778888888888888888888877 56666666655443
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.36 E-value=2.8e-06 Score=65.52 Aligned_cols=100 Identities=13% Similarity=0.014 Sum_probs=71.2
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP---NLALWGTLLL 484 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~ 484 (586)
..+..+...+...|++++|...++++.+ ..+.+...+..++.++...|++++|.+.+++. ...| +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3455566667777777777777777766 23445667777777777778888887777765 2223 4677777777
Q ss_pred HHHhc-CChHHHHHHHHHHHhcCCCCc
Q 007871 485 ACRNH-QNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 485 ~~~~~-~~~~~a~~~~~~~~~~~p~~~ 510 (586)
.+... |++++|+..++++.+..|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 78888 888888888888888877664
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.35 E-value=7.7e-06 Score=65.11 Aligned_cols=105 Identities=11% Similarity=0.038 Sum_probs=75.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHHhhCCCCCh---HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C---HHHHHHHHH
Q 007871 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKL---EHYSCLVDLLSRAGELEQALNIVESM-PMKP-N---LALWGTLLL 484 (586)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~---~~~~~~l~~ 484 (586)
.+...+...|++++|...|+.+.+. .+.+. ..+..++.++...|++++|...+++. ...| + ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 4455666777888888888877763 23333 46777788888888888888888766 2223 2 566777788
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 007871 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519 (586)
Q Consensus 485 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 519 (586)
++...|++++|...++++.+..|+++........+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 88899999999999999999988887666555443
No 173
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=6.6e-06 Score=65.41 Aligned_cols=95 Identities=6% Similarity=-0.039 Sum_probs=51.7
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C----CCCC----HHHHHH
Q 007871 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-P----MKPN----LALWGT 481 (586)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----~~p~----~~~~~~ 481 (586)
+..+...+.+.|++++|+..|++..+ -.|.+...|..++.+|...|++++|++.+++. . ..++ ..++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34444555555555555555555554 12334455555555555555555555555443 0 0111 134555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCC
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p 507 (586)
+..++...|++++|+..|+++++..|
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 66667777777777777777777655
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.34 E-value=2.3e-06 Score=67.39 Aligned_cols=98 Identities=11% Similarity=0.060 Sum_probs=67.2
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 007871 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRN 488 (586)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 488 (586)
+..+...+...|++++|...++++.+ ..+.+...+..++.++...|++++|+..+++. ...| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34455566777778888888777777 34456777777778888888888888877766 2334 56677777777888
Q ss_pred cCChHHHHHHHHHHHhcCCCCc
Q 007871 489 HQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 489 ~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
.|++++|+..++++++.+|.++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888877654
No 175
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.31 E-value=5.1e-06 Score=78.90 Aligned_cols=128 Identities=9% Similarity=-0.067 Sum_probs=87.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD----------------DLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
...+..+...|.+.|++++|+..|++.... .|+ ...+..+..+|.+.|++++|...++++.+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666777777777777776663 333 36677777777888888888888888777
Q ss_pred hhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 007871 437 HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLA-EVVVEGLVE 504 (586)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 504 (586)
-.+.+...+..++.+|...|++++|...|+++ ...| +...+..+..++...|++++| ...++++..
T Consensus 225 --~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 --LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23456777778888888888888888888776 2333 566677777777777777777 345555543
No 176
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.30 E-value=1.8e-06 Score=82.11 Aligned_cols=149 Identities=12% Similarity=-0.018 Sum_probs=79.6
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 007871 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452 (586)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 452 (586)
...+..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 34566667777778888888888888776 3454331 223344444332211 136788888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHH-HHhcCCchHH
Q 007871 453 LLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI-YADAGMWEHA 529 (586)
Q Consensus 453 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A 529 (586)
+|.+.|++++|+..+++. ...| +...+..+..+|...|++++|+..|+++++++|.++.++..+..+ ....+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988876 2334 678888888889999999999999999999999999998888877 4455677788
Q ss_pred HHHHHHHHhCCC
Q 007871 530 LRIRKMMRKRKI 541 (586)
Q Consensus 530 ~~~~~~m~~~~~ 541 (586)
...|++|.....
T Consensus 319 ~~~~~~~l~~~p 330 (338)
T 2if4_A 319 KEMYKGIFKGKD 330 (338)
T ss_dssp ------------
T ss_pred HHHHHHhhCCCC
Confidence 888888865443
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.30 E-value=5.7e-06 Score=68.76 Aligned_cols=128 Identities=13% Similarity=-0.041 Sum_probs=75.9
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHH
Q 007871 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK----LEHYSCLVDLLSRAGELEQALNIVESMP----MKPN----LAL 478 (586)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~ 478 (586)
+..+...+...|++++|...+++......-.++ ..++..++..+...|++++|.+.+++.. ..++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444444455555555555444431100011 1345556666666666666666665540 0111 344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC------CCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVELKA------DDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
+..+...+...|++++|...++++.+..+ .....+..++.++...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55666667788888888888888776531 1245677888899999999999999888765
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.30 E-value=2.2e-06 Score=71.65 Aligned_cols=79 Identities=11% Similarity=0.002 Sum_probs=65.2
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc-chHHHHHHH
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC-GLYVLLSNI 519 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 519 (586)
+...|..++.+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++++++|.++ .+...+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4567888999999999999999998877 3334 678888999999999999999999999999999998 556555544
Q ss_pred HH
Q 007871 520 YA 521 (586)
Q Consensus 520 ~~ 521 (586)
..
T Consensus 142 ~~ 143 (162)
T 3rkv_A 142 TE 143 (162)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.29 E-value=6.7e-07 Score=70.10 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 478 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
.+..+..++...|++++|+..++++++.+|+++.++..++.+|...|++++|...+++..+
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555555555555555555555555554433
No 180
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.29 E-value=4.9e-06 Score=76.77 Aligned_cols=171 Identities=8% Similarity=-0.107 Sum_probs=117.6
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 007871 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLL 484 (586)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 484 (586)
+...+..+...+...|++++|...|+...+ ..+.+...+..++.+|.+.|++++|...+++. ...| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456788888899999999999999999988 34557888999999999999999999999886 4445 6778888888
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCeeEEE-------ECCeEe
Q 007871 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE-------IDGNIK 557 (586)
Q Consensus 485 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~-------~~~~~~ 557 (586)
++...|++++|+..++++.+.+|+++..+...++...+.++ +.. +........+.++.....+ ....+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~ 156 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK---KKR-WNSIEERRIHQESELHSYLTRLIAAERERELE 156 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHH---HHH-HHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHH---HHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998876555544444433222 222 2223333333332211000 011222
Q ss_pred EEecCCCCCCChhHHHHHHHHHHHHH
Q 007871 558 EFVSGEIFDVQSEELELVIQSFVKTT 583 (586)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 583 (586)
.+-.....+|....+...+..++...
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~ 182 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKH 182 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHH
T ss_pred HHHhhhccccchhhhhhHHHHHHHHH
Confidence 23333356788888887777766554
No 181
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.28 E-value=0.00021 Score=66.40 Aligned_cols=191 Identities=8% Similarity=-0.058 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCC-hHHHHHHH
Q 007871 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG--SLDEARRIFYSMTK---KNVISYNVMIAGLGMNGF-GEEALKCF 396 (586)
Q Consensus 323 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~A~~~~ 396 (586)
++++..+++.+.... +-+..+|+.-..++.+.| .+++++.+++.+.+ .|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 345555555555543 224444444444444444 35566666655542 344555555445555555 36666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhcc--------------CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc-----
Q 007871 397 AQMETEGIPKDDLIFLGVLIACSHS--------------GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA----- 457 (586)
Q Consensus 397 ~~m~~~g~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 457 (586)
+++++.. +-|...|+.....+... +.++++++.+..... -.|-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccc
Confidence 6666532 22334444443333222 335566666666655 2344555554443333333
Q ss_pred ------CCHHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 007871 458 ------GELEQALNIVESM-PMKPNLALWGTLLLA-----CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSN 518 (586)
Q Consensus 458 ------g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 518 (586)
+.++++++.++++ ...|+. .|..+..+ ....+..++...++.++.+++|....-|..+..
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 2344555555444 223332 22211111 112345555666666666666665555555443
No 182
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.26 E-value=1e-05 Score=80.07 Aligned_cols=162 Identities=6% Similarity=-0.102 Sum_probs=94.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHhhccCCHHHHHHHHHHhHHh---hCCCC-ChHH
Q 007871 376 YNVMIAGLGMNGFGEEALKCFAQMETE-GIPKDD----LIFLGVLIACSHSGLATEGYRIFQSMKRH---CGIEP-KLEH 446 (586)
Q Consensus 376 ~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~-~~~~ 446 (586)
+..++..|...|++++|.+.+..+... +..++. .+.+.+...+...|+++.|..++...... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 445566666666666666666655431 011111 12233333445567777777777665431 11112 2456
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCC----cc
Q 007871 447 YSCLVDLLSRAGELEQALNIVESM-------PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELK---ADD----CG 511 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~ 511 (586)
+..++..|...|++++|..++++. ..++ ....+..++..|...|++++|..+++++.... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667777777777777777777654 1122 24456666777777788888888777776643 222 23
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 512 LYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 512 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
.+..++..+...|++++|...+.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45556666777778887777666653
No 183
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.25 E-value=0.00033 Score=65.09 Aligned_cols=178 Identities=10% Similarity=0.008 Sum_probs=133.2
Q ss_pred HHHHHHHHhccC---CCCHhHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCC-HHHHHHHH
Q 007871 358 LDEARRIFYSMT---KKNVISYNVMIAGLGMNG--FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL-ATEGYRIF 431 (586)
Q Consensus 358 ~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~A~~~~ 431 (586)
+++++.+++.+. ..+..+|+.-...+...| .+++++.+++++.+.. +-|...|+.-.-++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 566777777665 357778887777777777 4899999999999852 4466777777777777787 68999999
Q ss_pred HHhHHhhCCCCChHHHHHHHHHHhhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc------
Q 007871 432 QSMKRHCGIEPKLEHYSCLVDLLSRA--------------GELEQALNIVESM-PMKP-NLALWGTLLLACRNH------ 489 (586)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------ 489 (586)
..++. ..+.|...|+.....+.+. +.++++++.+++. ...| |...|+.+-..+...
T Consensus 169 ~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 99998 3566788888877776655 4578888888876 2334 788887666665554
Q ss_pred -----CChHHHHHHHHHHHhcCCCCcchHHHHHHHH---HhcCCchHHHHHHHHHHh
Q 007871 490 -----QNVTLAEVVVEGLVELKADDCGLYVLLSNIY---ADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 490 -----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~ 538 (586)
+.++++++.++++.+..|++..++..++... ...|..+++...+.++.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4578999999999999999976655554332 246778889999998876
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.25 E-value=5.7e-06 Score=79.47 Aligned_cols=89 Identities=9% Similarity=0.015 Sum_probs=79.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+..+|..++.+|.+.|++++|++.++++ ...| +...+..+..++...|++++|+..++++.+++|.++.++..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4578888999999999999999999887 4445 6788889999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHH
Q 007871 521 ADAGMWEHALR 531 (586)
Q Consensus 521 ~~~g~~~~A~~ 531 (586)
...++.+++..
T Consensus 352 ~~~~~~~~a~k 362 (370)
T 1ihg_A 352 QKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887765
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.24 E-value=1.6e-05 Score=79.32 Aligned_cols=116 Identities=12% Similarity=0.013 Sum_probs=63.0
Q ss_pred HHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHH
Q 007871 350 DMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426 (586)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 426 (586)
..+.+.|++++|.+.|++.. ..+...|..+..+|.+.|++++|+..+++..+. -+.+...+..+..+|...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-DKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 34455666666666666554 234556666666666666666666666666663 12234556666666666666666
Q ss_pred HHHHHHHhHHhhCCCCChHHHHHHHHH--HhhcCCHHHHHHHHH
Q 007871 427 GYRIFQSMKRHCGIEPKLEHYSCLVDL--LSRAGELEQALNIVE 468 (586)
Q Consensus 427 A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 468 (586)
|.+.++++.+. .+.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666666552 22233344444444 555666666666665
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.19 E-value=9e-06 Score=78.11 Aligned_cols=112 Identities=10% Similarity=-0.049 Sum_probs=81.6
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP-NLALWGTLLLACR 487 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 487 (586)
..+..+...+.+.|++++|...|+++.+.. +.. ......+++. ...| +...|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 345666666667777777777777665510 000 0000111110 0122 4567888888999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 488 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
..|++++|+..++++++.+|.++.++..++.+|...|++++|...+++..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998763
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.19 E-value=1.7e-06 Score=67.83 Aligned_cols=93 Identities=16% Similarity=0.130 Sum_probs=62.0
Q ss_pred cCCHHHHHHHHHHhHHhhC--CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 007871 421 SGLATEGYRIFQSMKRHCG--IEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAE 496 (586)
Q Consensus 421 ~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 496 (586)
.|++++|+..|++..+. + .+.+...+..++.+|...|++++|+..+++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46666777777776651 2 2334566777777777777777777777766 2223 5667777777788888888888
Q ss_pred HHHHHHHhcCCCCcchHH
Q 007871 497 VVVEGLVELKADDCGLYV 514 (586)
Q Consensus 497 ~~~~~~~~~~p~~~~~~~ 514 (586)
..++++++..|.++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 888888888888776543
No 188
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.19 E-value=2e-05 Score=78.34 Aligned_cols=64 Identities=13% Similarity=-0.042 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 476 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
...|..+..++.+.|++++|+..++++++++|.++.++..++.+|...|++++|...|++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5678888999999999999999999999999999999999999999999999999999999874
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.18 E-value=5.2e-06 Score=82.29 Aligned_cols=129 Identities=11% Similarity=0.014 Sum_probs=94.4
Q ss_pred hhccCCHHHHHHHHHHhHHhh--CCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 007871 418 CSHSGLATEGYRIFQSMKRHC--GIEP----KLEHYSCLVDLLSRAGELEQALNIVESM---------PMKPN-LALWGT 481 (586)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 481 (586)
+..+|++++|+.++++..+.. -+.+ ...+++.|+.+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456777888877777765521 1112 2467788888888888888888887765 23343 456788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh-----cCCCCcch---HHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCC
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVE-----LKADDCGL---YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 546 (586)
|...|...|++++|+.+++++++ .+|++|.+ ...+..++...|++++|...|.++++......+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~ 471 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPM 471 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 88889999999999999999987 46777654 5567888999999999999999998765444443
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.18 E-value=5.9e-06 Score=78.48 Aligned_cols=151 Identities=10% Similarity=0.005 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 007871 342 MIVQTALIDMYMKCGSLDEARRIFYSMTK--KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419 (586)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 419 (586)
...+..+...+.+.|++++|...|++... |+... +...|+.+++...+. ...+..+..+|.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 34567788888999999999999988663 33221 223334444433221 136788888999
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCChHHHH
Q 007871 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPN-LALWGTLLLA-CRNHQNVTLAE 496 (586)
Q Consensus 420 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~-~~~~~~~~~a~ 496 (586)
+.|++++|...+++..+ ..+.+...+..++.+|...|++++|...|++. ...|+ ...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 34567889999999999999999999999988 44553 4444444444 34556788889
Q ss_pred HHHHHHHhcCCCCcc
Q 007871 497 VVVEGLVELKADDCG 511 (586)
Q Consensus 497 ~~~~~~~~~~p~~~~ 511 (586)
..|.++....|.++.
T Consensus 320 ~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 320 EMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------
T ss_pred HHHHHhhCCCCCCCC
Confidence 999999998887653
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.12 E-value=0.0001 Score=74.92 Aligned_cols=168 Identities=9% Similarity=-0.032 Sum_probs=131.2
Q ss_pred HHHHHHHHhccCC---CCHhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC--
Q 007871 358 LDEARRIFYSMTK---KNVISYNVMIAGLGMNGF----------GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG-- 422 (586)
Q Consensus 358 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-- 422 (586)
.++|.+.++.+.. .+..+|+.-...+...|+ +++++..++++.+. -+-+..+|..-.-++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-NPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcccc
Confidence 4566676666652 344566665555555555 88999999999884 2345577887777788888
Q ss_pred CHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----------
Q 007871 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG-ELEQALNIVESM-PMKP-NLALWGTLLLACRNH---------- 489 (586)
Q Consensus 423 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---------- 489 (586)
+++++++.++++.+ ..+-+...|+.-..++.+.| .++++++.++++ ...| +...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 77999999999998 35668888888888888888 899999999888 4444 788888777776552
Q ss_pred ----CChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 007871 490 ----QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528 (586)
Q Consensus 490 ----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 528 (586)
+.++++++.+++++..+|.+..+|..+..++.+.|++++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988665
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.12 E-value=1.5e-05 Score=66.11 Aligned_cols=132 Identities=11% Similarity=-0.047 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCC----ChH
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGI-PKDD----LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP----KLE 445 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~ 445 (586)
++..+...+...|++++|+..+++...... .++. .++..+...+...|++++|...+++......-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344455555566666666666655543100 0111 3555666666777777777777776654211111 134
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007871 446 HYSCLVDLLSRAGELEQALNIVESM-------PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506 (586)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 506 (586)
.+..++.++...|++++|.+.+++. ...+ ....+..+...+...|++++|...++++.+..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5666777777778887777777655 1111 13455666777888888888888888887653
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.12 E-value=7.3e-06 Score=66.55 Aligned_cols=107 Identities=14% Similarity=0.035 Sum_probs=73.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHHhhCCCC-----C-----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-------CC
Q 007871 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEP-----K-----LEHYSCLVDLLSRAGELEQALNIVESM-PM-------KP 474 (586)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p 474 (586)
.....+...|++++|...|++..+-....| + ...|..+..++.+.|++++|+..+++. .. .|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 334444555555555555555554110000 1 227777777778888887777777655 23 66
Q ss_pred C-HHHH----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 007871 475 N-LALW----GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519 (586)
Q Consensus 475 ~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 519 (586)
+ ...| .....++...|++++|+..|++++++.|.+..+...+..+
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 4 5677 8888999999999999999999999999998877666543
No 194
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=5.5e-05 Score=74.73 Aligned_cols=159 Identities=9% Similarity=-0.025 Sum_probs=118.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC
Q 007871 380 IAGLGMNGFGEEALKCFAQMETEGIPKD----------------DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443 (586)
Q Consensus 380 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 443 (586)
...+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+.+..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3445677888888888888876422111 124778899999999999999999998773332222
Q ss_pred h----HHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----
Q 007871 444 L----EHYSCLVDLLSRAGELEQALNIVESM-------PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELK----- 506 (586)
Q Consensus 444 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 506 (586)
. .+.+.+...+...|++++|.++++.. ...+ -..++..+...+...|++++|..+++++....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 23445556667789999999988765 2233 35677888888999999999999999988742
Q ss_pred -CCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 507 -ADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 507 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
|....++..++.+|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 23345788899999999999999999998764
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.09 E-value=1.7e-05 Score=59.91 Aligned_cols=66 Identities=21% Similarity=0.169 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 474 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.+...+..+...+...|++++|+..|+++++.+|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 367778888888999999999999999999999999999999999999999999999999988654
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.07 E-value=8.6e-06 Score=62.75 Aligned_cols=93 Identities=12% Similarity=0.033 Sum_probs=74.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------cchHH
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PMK-PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD------CGLYV 514 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 514 (586)
+...+..++..+...|++++|++.+++. ... .+...+..+..++...|++++|+..++++++.+|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777888888888888888888776 223 367788888888999999999999999999999998 77888
Q ss_pred HHHHHHHhcCCchHHHHHHHH
Q 007871 515 LLSNIYADAGMWEHALRIRKM 535 (586)
Q Consensus 515 ~l~~~~~~~g~~~~A~~~~~~ 535 (586)
.++.++...|++++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888887777655543
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.03 E-value=2.4e-05 Score=57.55 Aligned_cols=82 Identities=17% Similarity=0.188 Sum_probs=63.8
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PM-KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+...+..++..+...|++++|...+++. .. +.+...+..+..++...|++++|+..++++.+.+|.++..+..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456667777788888888888887766 22 235677778888888889999999999999999999888888888887
Q ss_pred HhcC
Q 007871 521 ADAG 524 (586)
Q Consensus 521 ~~~g 524 (586)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.96 E-value=3.4e-05 Score=76.42 Aligned_cols=114 Identities=11% Similarity=-0.026 Sum_probs=89.3
Q ss_pred HHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCc---chH
Q 007871 452 DLLSRAGELEQALNIVESM---------PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVEL-----KADDC---GLY 513 (586)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~~ 513 (586)
..+..+|++++|+.++++. +..|+ ..+++.+...|...|++++|+.+++++++. +|++| ..+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466889999999988765 12333 467888999999999999999999999873 56665 458
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCeeEEEECCeEeEEecCCCCCCChhHHHHHHHHHHHHH
Q 007871 514 VLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTT 583 (586)
Q Consensus 514 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 583 (586)
+.|+.+|..+|++++|..++++..+-... ..| ..||.++++...|.+.+..+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~-----------------~lG-~~Hp~~~~~~~~l~~~~~e~ 448 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLV-----------------THG-PSHPITKDLEAMRMQTEMEL 448 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTC-TTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----------------HhC-CCChHHHHHHHHHHHHHHHH
Confidence 88999999999999999999998653221 122 34999999999888887544
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.94 E-value=5e-05 Score=58.93 Aligned_cols=64 Identities=14% Similarity=0.041 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 475 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
+...+..+...+...|++++|+..++++++.+|.++..+..++.+|...|++++|...+++..+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666777777777777777777777777777777777777777777777777777777655
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.91 E-value=0.00016 Score=58.16 Aligned_cols=90 Identities=9% Similarity=-0.099 Sum_probs=49.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh---
Q 007871 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN----HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD--- 522 (586)
Q Consensus 450 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 522 (586)
|...|...+..++|.+.|++.....++.....+...|.. .+++++|..+|+++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444444455555444222344444455555544 55666666666666554 355566666666666
Q ss_pred -cCCchHHHHHHHHHHhCCC
Q 007871 523 -AGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 523 -~g~~~~A~~~~~~m~~~~~ 541 (586)
.+++++|..++++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 6666666666666666554
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.85 E-value=0.00011 Score=54.01 Aligned_cols=70 Identities=7% Similarity=-0.014 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 473 KPNLALWGTLLLACRNHQN---VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 473 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
++++..+..+..++...++ .++|..+++++++.+|+++..+..++..+.+.|++++|+.+|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3577788888888654444 799999999999999999999999999999999999999999999886443
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=8.2e-05 Score=57.07 Aligned_cols=66 Identities=8% Similarity=-0.058 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 475 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
+...+..+...+...|++++|+..++++++..|.++.++..++.+|...|++++|...+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456778888889999999999999999999999999999999999999999999999999998753
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.79 E-value=1.7e-05 Score=64.17 Aligned_cols=96 Identities=7% Similarity=-0.013 Sum_probs=66.1
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007871 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVE 500 (586)
Q Consensus 421 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 500 (586)
.+.+++|.+.++...+ -.+.+...|..+..++...++++.+.+.++ .+++|+..|+
T Consensus 15 ~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~----------------------~~~eAi~~le 70 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQ----------------------MIQEAITKFE 70 (158)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHH----------------------HHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHh----------------------HHHHHHHHHH
Confidence 3455566666666555 233455555555555555554443322221 3679999999
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcC-----------CchHHHHHHHHHHhCC
Q 007871 501 GLVELKADDCGLYVLLSNIYADAG-----------MWEHALRIRKMMRKRK 540 (586)
Q Consensus 501 ~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~~ 540 (586)
++++++|+++.+|+.++.+|...| ++++|.+.|++..+..
T Consensus 71 ~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 71 EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 999999999999999999998875 8999999999988743
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.78 E-value=3.3e-05 Score=75.24 Aligned_cols=105 Identities=13% Similarity=0.028 Sum_probs=78.3
Q ss_pred hcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCCc---chHHHHH
Q 007871 456 RAGELEQALNIVESM---------PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVE-----LKADDC---GLYVLLS 517 (586)
Q Consensus 456 ~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~ 517 (586)
..|++++|+.++++. +..|+ ..+++.+..+|...|++++|+.+++++++ .+|++| ..++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356777777777654 12232 46678888889999999999999999887 356655 4588899
Q ss_pred HHHHhcCCchHHHHHHHHHHhCCCccCCCeeEEEECCeEeEEecCCCCCCChhHHHHHHHH
Q 007871 518 NIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQS 578 (586)
Q Consensus 518 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (586)
.+|..+|++++|..++++..+-... ..| ..||.+++++..|.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~-----------------~lG-~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEV-----------------AHG-KDHPYISEIKQEIES 432 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTC-TTCHHHHHHHHHHHC
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHH-----------------HcC-CCChHHHHHHHHHhc
Confidence 9999999999999999998663221 122 348999998888764
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.78 E-value=0.0002 Score=52.42 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 475 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+...+..+...+...|++++|+..++++++..|.++..+..++.++...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35667778888999999999999999999999999999999999999999999999999998764
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.76 E-value=0.00042 Score=70.44 Aligned_cols=152 Identities=11% Similarity=0.058 Sum_probs=125.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCC----------HHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 007871 386 NGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGL----------ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454 (586)
Q Consensus 386 ~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (586)
....++|++.++++.. ..|+. ..|+.-..++...|+ ++++...++.+.+ ..+-+..+|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 3445788999999998 56654 566666666666666 8999999999998 4566888999888889
Q ss_pred hhcC--CHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc------
Q 007871 455 SRAG--ELEQALNIVESM-P-MKPNLALWGTLLLACRNHQ-NVTLAEVVVEGLVELKADDCGLYVLLSNIYADA------ 523 (586)
Q Consensus 455 ~~~g--~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 523 (586)
.+.| +++++++.++++ . ...+...|+.-...+...| .++++++.++++++.+|.|..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999 779999999988 2 3347889988888888888 899999999999999999999999999998874
Q ss_pred --------CCchHHHHHHHHHHhCCC
Q 007871 524 --------GMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 524 --------g~~~~A~~~~~~m~~~~~ 541 (586)
+++++|.+++++......
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred cccccccHHHHHHHHHHHHHHHhhCC
Confidence 567889888888876443
No 207
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.70 E-value=8.3e-05 Score=72.55 Aligned_cols=116 Identities=15% Similarity=0.120 Sum_probs=87.2
Q ss_pred HHHHhhcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCc---ch
Q 007871 451 VDLLSRAGELEQALNIVESM---------PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVEL-----KADDC---GL 512 (586)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~ 512 (586)
+..+.+.|++++|+.++++. +..| ...+++.++.+|...|++++|+.+++++++. +|++| ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455778888888888755 1112 2456788888899999999999999998873 45555 45
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCeeEEEECCeEeEEecCCCCCCChhHHHHHHHHHHHHHh
Q 007871 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTI 584 (586)
Q Consensus 513 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 584 (586)
++.|+.+|..+|++++|..++++..+--.. ..| ..||.+++++..|.+..-.++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~-----------------~lG-~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV-----------------THG-REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTC-TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-----------------hcC-CCChHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999998663211 122 349999999999998876654
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.69 E-value=0.00018 Score=55.62 Aligned_cols=80 Identities=10% Similarity=-0.006 Sum_probs=50.2
Q ss_pred HHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMK-PNLALWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 427 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
|...+++..+ ..+.+...+..++.+|...|++++|+..+++. ... .+...|..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555554 23445566666666677777777777766655 222 3456666677777777777777777777777
Q ss_pred cCCC
Q 007871 505 LKAD 508 (586)
Q Consensus 505 ~~p~ 508 (586)
..|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 6653
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.69 E-value=0.00087 Score=53.79 Aligned_cols=113 Identities=9% Similarity=-0.072 Sum_probs=93.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh----cCCHH
Q 007871 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR----AGELE 461 (586)
Q Consensus 386 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 461 (586)
.+++++|+.+|++..+.| .|... +...|...+.+++|.++|++..+. -+...+..|...|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 346789999999999887 34433 777788888899999999999883 467788889999988 88999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCC
Q 007871 462 QALNIVESMPMKPNLALWGTLLLACRN----HQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 462 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 507 (586)
+|.+.|++....-++..+..+...|.. .+++++|..+++++.+.+.
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999988545678888888888888 8999999999999988753
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.68 E-value=4.2e-05 Score=61.92 Aligned_cols=126 Identities=15% Similarity=0.008 Sum_probs=88.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCH----------HHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 007871 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA----------TEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453 (586)
Q Consensus 384 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (586)
.+.+.+++|.+.+++..+. -+.+...|..+..++...+++ ++|+..|++.++ -.+.+...|..++.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l-~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS-NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHH
Confidence 4667889999999999984 234667888888888888765 588888888877 234466778888888
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 007871 454 LSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 454 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 533 (586)
|...|.+ .|+.. ...|++++|+..|+++++++|++......+- ..++|.++.
T Consensus 90 y~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~el~ 141 (158)
T 1zu2_A 90 YTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQLH 141 (158)
T ss_dssp HHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHHHH
T ss_pred HHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHhcc
Confidence 8777654 34331 1237899999999999999999875544433 234555555
Q ss_pred HHHHhCC
Q 007871 534 KMMRKRK 540 (586)
Q Consensus 534 ~~m~~~~ 540 (586)
-.+...+
T Consensus 142 ~~~~~~~ 148 (158)
T 1zu2_A 142 AEAYKQG 148 (158)
T ss_dssp HHHHHSS
T ss_pred Ccccccc
Confidence 5555443
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.50 E-value=0.00053 Score=51.16 Aligned_cols=64 Identities=22% Similarity=0.233 Sum_probs=43.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchH
Q 007871 450 LVDLLSRAGELEQALNIVESM-PMKP-NLA-LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLY 513 (586)
Q Consensus 450 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 513 (586)
.+..+...|++++|.+.+++. ...| +.. .+..+..++...|++++|+..|+++++.+|.++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455666777777777777765 2233 455 666666777777777777777777777777777665
No 212
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.44 E-value=0.023 Score=43.48 Aligned_cols=141 Identities=9% Similarity=0.026 Sum_probs=103.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHH
Q 007871 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462 (586)
Q Consensus 383 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 462 (586)
+.-.|..++..++..+... ..+..-+++++--....-+=+-..++++.+-+-+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 4556788888888887766 334556666666555555555566666665442111 24566666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 463 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
....+-.+. .+....+..+..+...|.-+.-.+++..+..-++.+|.+...++.+|.+.|+..+|.+++.+.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666653 355667778888999999999999999987778899999999999999999999999999999999985
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.28 E-value=0.00075 Score=50.55 Aligned_cols=66 Identities=12% Similarity=0.020 Sum_probs=40.6
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007871 442 PKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 442 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 507 (586)
.+...+..++.+|...|++++|+..|++. ...| +...|..+..+|...|++++|+..+++++++.|
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 34555666666666666666666666655 2222 445566666666677777777777776666543
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.18 E-value=0.0022 Score=47.64 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=31.2
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhhCCCCChH-HHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLE-HYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
...+...|++++|...++++.+ ..+.+.. .+..++.+|...|++++|.+.|++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445556666666666666655 2233445 5566666666666666666666554
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.11 E-value=0.0017 Score=63.14 Aligned_cols=95 Identities=15% Similarity=0.066 Sum_probs=64.9
Q ss_pred ccCCHHHHHHHHHHhHHhh--CCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 007871 420 HSGLATEGYRIFQSMKRHC--GIEP----KLEHYSCLVDLLSRAGELEQALNIVESM---------PMKPN-LALWGTLL 483 (586)
Q Consensus 420 ~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~ 483 (586)
..|++++|..++++..+.. -+.| ...+++.|+.+|...|++++|+.++++. +..|+ ..+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3466777777777655421 1122 2356777888888888888888877765 23343 45677888
Q ss_pred HHHHhcCChHHHHHHHHHHHh-----cCCCCcchHH
Q 007871 484 LACRNHQNVTLAEVVVEGLVE-----LKADDCGLYV 514 (586)
Q Consensus 484 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~ 514 (586)
..|...|++++|+.+++++++ .+|++|.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 889999999999999998887 3677775443
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.09 E-value=0.004 Score=49.74 Aligned_cols=92 Identities=15% Similarity=0.041 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChHH
Q 007871 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG---ELEQALNIVESM-PMK-P--NLALWGTLLLACRNHQNVTL 494 (586)
Q Consensus 422 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~ 494 (586)
+....+.+-|.+... .-+++..+.-.+..++.+.+ +.++++.++++. ... | +...+..+..++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 345566667766655 23467778788888888877 566888888766 222 4 35666677777888888888
Q ss_pred HHHHHHHHHhcCCCCcchHHH
Q 007871 495 AEVVVEGLVELKADDCGLYVL 515 (586)
Q Consensus 495 a~~~~~~~~~~~p~~~~~~~~ 515 (586)
|.++++.+++.+|+|..+...
T Consensus 90 A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHH
Confidence 888888888888887765544
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.08 E-value=0.016 Score=54.07 Aligned_cols=138 Identities=5% Similarity=-0.115 Sum_probs=64.8
Q ss_pred CCHhHHHHHHHHH--HhcC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhc---cC-----CHHHHHHHHHHhHH
Q 007871 371 KNVISYNVMIAGL--GMNG---FGEEALKCFAQMETEGIPKDD-LIFLGVLIACSH---SG-----LATEGYRIFQSMKR 436 (586)
Q Consensus 371 ~~~~~~~~l~~~~--~~~~---~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~---~g-----~~~~A~~~~~~~~~ 436 (586)
.+...|...+.+. ...+ ...+|..+|++.++ ..|+. ..+..+..+|.. .+ ........+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 3555666655553 3333 34678888888887 56653 344444433320 00 00000011111100
Q ss_pred hhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 437 HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
....+.+..+|..+...+...|++++|...++++ ...|+...|..+...+.-.|++++|...++++..++|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 0012334455555555455555555555555554 2234444444444445555555555555555555555443
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.02 E-value=0.0033 Score=61.27 Aligned_cols=101 Identities=12% Similarity=-0.035 Sum_probs=71.7
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhh--CCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHH
Q 007871 415 LIACSHSGLATEGYRIFQSMKRHC--GIEP----KLEHYSCLVDLLSRAGELEQALNIVESM---------PMKPN-LAL 478 (586)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~ 478 (586)
+..+..+|++++|..++++..+.. -+.| ...+++.++.+|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556778888888887776521 1222 2457778888888888888888887765 23343 456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCCcchHHH
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVE-----LKADDCGLYVL 515 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~ 515 (586)
++.+...|...|++++|+.+++++++ .+|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 77888889999999999999999887 46887765443
No 219
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.87 E-value=0.49 Score=48.08 Aligned_cols=114 Identities=9% Similarity=-0.057 Sum_probs=66.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHH
Q 007871 387 GFGEEALKCFAQMETEGIPKDDL----IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462 (586)
Q Consensus 387 ~~~~~A~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 462 (586)
.+.+.|...|......+ ..+.. ....+.......+...++...+..... ...+.......+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHH
Confidence 36788888887776432 22322 222333334445534555556655433 22333344455555567788888
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 463 ALNIVESMPMKP--NLALWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 463 A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
|...|+.++..+ ...-..-+..++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888885432 233334455566777888888888888764
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.85 E-value=0.0071 Score=56.42 Aligned_cols=136 Identities=10% Similarity=0.048 Sum_probs=94.7
Q ss_pred CCCCHHHHHHHHHHh--hcc---CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh---cC-C-------HHHHHHHH
Q 007871 404 IPKDDLIFLGVLIAC--SHS---GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR---AG-E-------LEQALNIV 467 (586)
Q Consensus 404 ~~p~~~~~~~l~~~~--~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g-~-------~~~A~~~~ 467 (586)
.+.+...|...+++. ... .+..+|..+|+++.+ ..|-....+..+..+|.- .+ . ...+....
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 455666777776654 333 345789999999988 234455666655555531 11 1 11222222
Q ss_pred HhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 468 ESMP-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 468 ~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
..+. .+.++..+..+...+...|++++|...++++++++| +...|..++.++.-.|++++|.+.|++....+..
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 2232 345778888887777778999999999999999996 5667788999999999999999999998876543
No 221
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.79 E-value=2e-05 Score=74.65 Aligned_cols=259 Identities=10% Similarity=0.020 Sum_probs=143.7
Q ss_pred cccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC--CChhhHHHHHHHHH
Q 007871 112 NYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI--KDLVSWNLVLRGFV 189 (586)
Q Consensus 112 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~ 189 (586)
+..|..|..+....+.+.+|.+-| ++ .-|+..|..+|....+.|.+++-...++-..+ +++..=+.|+-+|+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy---Ik---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY---IK---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALA 127 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS---CC---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHH---Hh---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 345666666666666555554322 11 23455566666666666666666666644332 24445556666666
Q ss_pred hCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007871 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269 (586)
Q Consensus 190 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 269 (586)
+.++..+-.+++. .||......+.+.| ...|.++.|+-+|..+.. |..|...+.+.|+++.|.+.-.+ .
T Consensus 128 k~~rL~elEefl~---~~N~A~iq~VGDrc-f~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK--A 196 (624)
T 3lvg_A 128 KTNRLAELEEFIN---GPNNAHIQQVGDRC-YDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK--A 196 (624)
T ss_dssp TSCSSSTTTSTTS---CCSSSCTHHHHHHH-HHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT--C
T ss_pred hhCcHHHHHHHHc---CCCcccHHHHHHHH-HHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh--c
Confidence 6666554333322 45555555555555 556666666555554431 22222333344444444322111 1
Q ss_pred CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 007871 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349 (586)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (586)
.++.+|-.+-.+|...+.+..|.-.--.++- .|| ....++..|...|-+++...+++.-... -+....+|+-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHH
Confidence 4667888888888888887776554433331 121 1233555677778888777777765532 134566777777
Q ss_pred HHHHhcCCHHHHHHHHhccCC----C-------CHhHHHHHHHHHHhcCChHHHHH
Q 007871 350 DMYMKCGSLDEARRIFYSMTK----K-------NVISYNVMIAGLGMNGFGEEALK 394 (586)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~A~~ 394 (586)
-.|++- +.++..+.++..-. | ....|.-++-.|.+..++|.|..
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 777765 34455544443221 2 34467778888888888887653
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.79 E-value=0.0054 Score=49.02 Aligned_cols=76 Identities=17% Similarity=0.103 Sum_probs=33.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccC---CHHHHHHHHHHhHHhhCCCC--ChHHHHHHHHHHhhcCCHHHHHHH
Q 007871 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSG---LATEGYRIFQSMKRHCGIEP--KLEHYSCLVDLLSRAGELEQALNI 466 (586)
Q Consensus 392 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 466 (586)
+.+-|.+....|. ++..+...+..++.+.+ +.+++..+++...+. . .| ....+-.+.-+|.+.|++++|.++
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 3333443333332 44444444444444444 334555555555442 1 12 233344444445555555555555
Q ss_pred HHhC
Q 007871 467 VESM 470 (586)
Q Consensus 467 ~~~~ 470 (586)
++.+
T Consensus 94 ~~~l 97 (152)
T 1pc2_A 94 VRGL 97 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.78 E-value=0.13 Score=54.95 Aligned_cols=150 Identities=15% Similarity=0.090 Sum_probs=78.7
Q ss_pred HhCCChhHHHH-HHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007871 189 VECGEMGKARE-VFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267 (586)
Q Consensus 189 ~~~g~~~~A~~-~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 267 (586)
...+++++|.+ ++..+. +......++..+ .+.|..+.|.++.+. .. .-.......|+++.|.++.+.+
T Consensus 610 ~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l-~~~~~~~~a~~~~~~-----~~---~~f~~~l~~~~~~~A~~~~~~~ 678 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE--GKDSLTKIARFL-EGQEYYEEALNISPD-----QD---QKFELALKVGQLTLARDLLTDE 678 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC--CHHHHHHHHHHH-HHTTCHHHHHHHCCC-----HH---HHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHhcCC--chHHHHHHHHHH-HhCCChHHheecCCC-----cc---hheehhhhcCCHHHHHHHHHhh
Confidence 34555665555 432221 011123333333 555666665554421 11 1123345667777777776665
Q ss_pred CCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHH
Q 007871 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA 347 (586)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 347 (586)
. +...|..+...+.+.++++.|...|..+.. |..+...+...++.+....+.+.....|- ++.
T Consensus 679 ~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~ 741 (814)
T 3mkq_A 679 S--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNL 741 (814)
T ss_dssp C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHH
T ss_pred C--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHH
Confidence 3 446777777777778888887777776542 23334444445555555544444444331 233
Q ss_pred HHHHHHhcCCHHHHHHHHh
Q 007871 348 LIDMYMKCGSLDEARRIFY 366 (586)
Q Consensus 348 l~~~~~~~g~~~~a~~~~~ 366 (586)
...+|.+.|++++|.+++.
T Consensus 742 A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 742 AFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3344555666666665554
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.77 E-value=0.0096 Score=44.73 Aligned_cols=71 Identities=13% Similarity=0.047 Sum_probs=49.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 447 YSCLVDLLSRAGELEQALNIVESM-----P----MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
.-.++..+...|+++.|...++.+ . ..+....+..+..++.+.|+++.|..+++++.+..|+++.+...+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 334555555555555555555443 0 1234677788888899999999999999999999999987766654
No 225
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.72 E-value=0.0011 Score=63.25 Aligned_cols=233 Identities=13% Similarity=0.094 Sum_probs=128.4
Q ss_pred ChhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 007871 43 EPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122 (586)
Q Consensus 43 ~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 122 (586)
.+.+|..+-. +..+. |...+|++-|= ...|+..|..++.+..+.|.+++-+.++...++..- ++..=+.|+-+|
T Consensus 53 ~p~VWs~Lgk-AqL~~-~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAK-AQLQK-GMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHH-HTTTS-SSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHH
T ss_pred CccHHHHHHH-HHHcc-CchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHH
Confidence 3445555555 55555 66666655442 233445566777777777777777777765554422 333334667777
Q ss_pred hccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC------------------------CCCh
Q 007871 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE------------------------IKDL 178 (586)
Q Consensus 123 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~------------------------~~~~ 178 (586)
++.++..+.++.+. .|+..-.....+-|...|.++.|.-+|..+. ..++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 77766655443321 2455555555566666666666665554332 1255
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHhhCC-CCChhHHHHHHHHHhhccCCHHHHHHHHHhCCC---CChhHHHHHHHHHHhc
Q 007871 179 VSWNLVLRGFVECGEMGKAREVFDEMP-QKDAISWSIMIDGYRKKKGDISSARILFEHMPI---KDLISWNSMIDGYAKI 254 (586)
Q Consensus 179 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 254 (586)
.+|-.+-.+|+..+++.-|.-.--.+. .+|. ...++..| ...|.+++-+.+++.... .....|+-|.-.|++-
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvhade--L~elv~~Y-E~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYY-QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC--CSGGGSSS-STTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcccHHH--HHHHHHHH-HhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Confidence 677777777877777665544322222 2211 01123334 566777777777766552 2455566666666654
Q ss_pred CCHHHHHHHHhhCCC----C-------ChhHHHHHHHHHHhCCCchHHH
Q 007871 255 GDLVAAQQLFNEMPE----R-------NVFSWSIMIDGYAQHGNPKEAL 292 (586)
Q Consensus 255 g~~~~A~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~A~ 292 (586)
+.++..+.++.... | ....|.-++-.|.+-.+++.|.
T Consensus 277 -~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 277 -KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp -CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 34444444443322 2 3345666666666666666554
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.70 E-value=0.086 Score=56.43 Aligned_cols=130 Identities=10% Similarity=0.050 Sum_probs=77.2
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChH
Q 007871 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390 (586)
Q Consensus 311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 390 (586)
..++..+...|..+.|.++.+. . ..-+......|+++.|.++.+.+ .+...|..+...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHH
Confidence 4555555666666666655421 1 11133445678888888887665 35678888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 391 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
.|.+.|.++.. |..+...+...|+.+...++-+..... | -++....+|.+.|++++|++++.++
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 88888887644 334444444466666555444444331 1 1233334455566666666665554
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.56 E-value=0.008 Score=53.63 Aligned_cols=86 Identities=10% Similarity=0.013 Sum_probs=64.7
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCC-cchHHHHHHHHHhc-CCchHH
Q 007871 461 EQALNIVESM-PMKPN---LALWGTLLLACRN-----HQNVTLAEVVVEGLVELKADD-CGLYVLLSNIYADA-GMWEHA 529 (586)
Q Consensus 461 ~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A 529 (586)
..|...+++. ...|+ ...|..+...|.. -|+.++|+++|+++++++|+. +..+...++.++.. |++++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4455555544 34454 4566666666766 489999999999999999975 99999999998884 899999
Q ss_pred HHHHHHHHhCCCccCCC
Q 007871 530 LRIRKMMRKRKIKKETG 546 (586)
Q Consensus 530 ~~~~~~m~~~~~~~~~~ 546 (586)
.+++++........+|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 99999998877664343
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.39 E-value=0.015 Score=43.61 Aligned_cols=65 Identities=15% Similarity=0.042 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-------CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELK-------ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 475 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+..-...+...+...|++..|..+++.+.+.. +..+.++..++.+|.+.|+++.|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455677888999999999999999999853 345678999999999999999999999999763
No 229
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.39 E-value=0.028 Score=41.02 Aligned_cols=70 Identities=10% Similarity=-0.027 Sum_probs=48.5
Q ss_pred CCChHHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 441 EPKLEHYSCLVDLLSRAGE---LEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
+.++..+..++.++...++ .++|..++++. ...| ++.....+...+...|++++|+..|+++.+.+|+++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 4566667777777654444 57777777766 3334 566666667777888888888888888888887743
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.42 Score=39.19 Aligned_cols=102 Identities=11% Similarity=0.079 Sum_probs=53.7
Q ss_pred HHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 007871 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431 (586)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (586)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+.-.++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34556666666665554 3455666666666666666666666665433 233333344455555444433
Q ss_pred HHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 007871 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471 (586)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 471 (586)
+....+ | -++.-..++.-.|+++++.++|.+.+
T Consensus 84 ~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 84 NIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 333321 1 12333344555666666666666554
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.75 E-value=0.039 Score=42.31 Aligned_cols=92 Identities=16% Similarity=0.034 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChHH
Q 007871 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ---ALNIVESM-PMK-P--NLALWGTLLLACRNHQNVTL 494 (586)
Q Consensus 422 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~ 494 (586)
.....+.+-|...... +. ++..+--.+..++.+..+..+ ++.+++.. ... | .......+..++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3444555555555442 33 666666677777777776655 67777665 222 3 23445556666777888888
Q ss_pred HHHHHHHHHhcCCCCcchHHH
Q 007871 495 AEVVVEGLVELKADDCGLYVL 515 (586)
Q Consensus 495 a~~~~~~~~~~~p~~~~~~~~ 515 (586)
|.++++.+++..|.|..+...
T Consensus 93 A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 888888888888877655443
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.52 E-value=0.13 Score=39.48 Aligned_cols=63 Identities=13% Similarity=0.058 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHhhccCCHHH---HHHHHHHhHHhhCCCC--ChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 406 KDDLIFLGVLIACSHSGLATE---GYRIFQSMKRHCGIEP--KLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 406 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
|+..+-..+..++.+..+... ++.+++.+.+. ..| .....-.|.-++.+.|++++|.++++.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~l 100 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL 100 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444444444444444444333 44555544441 111 2233333444555555555555555544
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.00 E-value=0.094 Score=54.26 Aligned_cols=55 Identities=22% Similarity=0.069 Sum_probs=51.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
-...|...|+++.|+.+.+++....|.+..+|..|+.+|...|+|+.|+-.++-+
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445778999999999999999999999999999999999999999999999887
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.98 E-value=0.23 Score=39.12 Aligned_cols=35 Identities=9% Similarity=0.202 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHhhccCCH------HHHHHHHHHhHHhhCCCCC
Q 007871 407 DDLIFLGVLIACSHSGLA------TEGYRIFQSMKRHCGIEPK 443 (586)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~ 443 (586)
|..+|-..+....+.|++ ++..++|++... .++|+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~ 52 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPD 52 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGG
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCcc
Confidence 455666666666666666 666677776666 45554
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.96 E-value=1.3 Score=36.38 Aligned_cols=129 Identities=17% Similarity=0.089 Sum_probs=83.8
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 007871 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395 (586)
Q Consensus 316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 395 (586)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|...|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHH
Confidence 344567777777776654 3566788888888888888888888887764 34444556667777776666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 007871 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471 (586)
Q Consensus 396 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 471 (586)
-+.....| -++....++...|+++++.+++.+.-+ .|... -.....|..+.|.++.++++
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r----~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS----LPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC----HHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC----hHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 55555544 145555566778999999888866532 22211 11223566777777777763
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.92 E-value=2 Score=38.48 Aligned_cols=113 Identities=9% Similarity=-0.040 Sum_probs=60.2
Q ss_pred cCCHHHHHHHHhccCCCCHh--HHHHHHHH-HHhc--CC------hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhc
Q 007871 355 CGSLDEARRIFYSMTKKNVI--SYNVMIAG-LGMN--GF------GEEALKCFAQMETEGIPKD---DLIFLGVLIACSH 420 (586)
Q Consensus 355 ~g~~~~a~~~~~~~~~~~~~--~~~~l~~~-~~~~--~~------~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~ 420 (586)
.++..+..+.+....+.++. .|..++.+ +... |+ ...|...+++.++ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 34444555555555544433 34444432 2221 22 3455666666666 5565 3456666666655
Q ss_pred -----cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc-CCHHHHHHHHHhC
Q 007871 421 -----SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA-GELEQALNIVESM 470 (586)
Q Consensus 421 -----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 470 (586)
-|+.++|.+.|++..+- +-.-+..++..+.+.++.. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~L-nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRY-CSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHH-CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 36777777777776661 2111355555566666653 6666666666654
No 237
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=94.83 E-value=1.7 Score=37.17 Aligned_cols=151 Identities=11% Similarity=0.126 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCH
Q 007871 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDI 226 (586)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~ 226 (586)
..+....+..+.+.|+.+..-.+.+.+..++...-...+.++...|..+....+.+.+..++...-...+.++ ...|+.
T Consensus 33 ~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL-~~~~~~ 111 (211)
T 3ltm_A 33 YYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVAL-GQIGDE 111 (211)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHH-HHHCCG
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHH-HHhCcH
Confidence 3333333344444443333333333333344444444444444444433333333333344444333444444 344443
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHH
Q 007871 227 SSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299 (586)
Q Consensus 227 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 299 (586)
+....+.+.+..++..+....+.++.+.|..+....+...+.+++...-...+.++...+. ..+...+..+.
T Consensus 112 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 112 RAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 3333333333344544444455555555543333333333334444444444444444443 33333444443
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.73 E-value=0.49 Score=36.92 Aligned_cols=74 Identities=11% Similarity=0.109 Sum_probs=48.5
Q ss_pred CCChHHHHHHHHHHhhcCCHH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHH
Q 007871 441 EPKLEHYSCLVDLLSRAGELE---QALNIVESM-PMKP--NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYV 514 (586)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 514 (586)
.|+..+--.+..++.+..+.+ +++.+++.. ...| ...+...+..++.+.|++++|.++.+.+++.+|.|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 566666666777777766543 456666655 2223 3455555666677888888888888888888887765543
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.20 E-value=0.47 Score=37.39 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=27.8
Q ss_pred CCCHhHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCC
Q 007871 370 KKNVISYNVMIAGLGMNGFG------EEALKCFAQMETEGIPKD 407 (586)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~m~~~g~~p~ 407 (586)
..|..+|-..+...-+.|++ ++..++|++.... ++|+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~ 52 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPD 52 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcc
Confidence 45777888888877777888 7778888877774 6665
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.10 E-value=0.27 Score=37.86 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc
Q 007871 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511 (586)
Q Consensus 477 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 511 (586)
.++..+..++.+.|++++|.++.+.+++..|.|..
T Consensus 79 d~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 79 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 33334444444555555555555555555555443
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.84 E-value=8 Score=41.07 Aligned_cols=296 Identities=11% Similarity=0.089 Sum_probs=149.5
Q ss_pred HHHHHHHHhCCChhHH-HHHHh-hCC-CCChhHHHHHHH-HHhhccCCHHHHHHHHHhCCC----CChh--HHHHHHHHH
Q 007871 182 NLVLRGFVECGEMGKA-REVFD-EMP-QKDAISWSIMID-GYRKKKGDISSARILFEHMPI----KDLI--SWNSMIDGY 251 (586)
Q Consensus 182 ~~l~~~~~~~g~~~~A-~~~~~-~~~-~~~~~~~~~ll~-~~~~~~g~~~~a~~~~~~~~~----~~~~--~~~~l~~~~ 251 (586)
..+..+++..|--.+. +.... ++. ..+..-+.+... +. ...|+.+++..+++.... .+.. .-..+.-+.
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGl-Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGl 421 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGV-IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGL 421 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHH-HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhh-hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHH
Confidence 4556777777754433 21111 111 222222222222 22 467888888888887765 2222 233344445
Q ss_pred HhcCCHHHHHHHHhhCCC-CC----------hhHHHHHHHHHHhCCC-chHHHHHHHHHHHCCCCCCHHHHH--HHHHHH
Q 007871 252 AKIGDLVAAQQLFNEMPE-RN----------VFSWSIMIDGYAQHGN-PKEALYLFREMLCQGVRPDVISVM--GAISAC 317 (586)
Q Consensus 252 ~~~g~~~~A~~~~~~~~~-~~----------~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~g~~~~~~~~~--~l~~~~ 317 (586)
...|...++..++..... ++ +..-..+.-+++..|. -+++.+.+..+.... .+...... .+...+
T Consensus 422 i~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~ 500 (963)
T 4ady_A 422 IYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCM 500 (963)
T ss_dssp HTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhh
Confidence 566665566666555432 22 1112223333333332 246666666666532 11111122 222334
Q ss_pred hccCChhHHHHHHHHHHHcCCCCchhHHHHHHH--HHHhcCCHHHHHHHHhccCC-CCHh-HHH---HHHHHHHhcCChH
Q 007871 318 AQVGALDLGKWIHVFMKRSRITMDMIVQTALID--MYMKCGSLDEARRIFYSMTK-KNVI-SYN---VMIAGLGMNGFGE 390 (586)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~-~~~~-~~~---~l~~~~~~~~~~~ 390 (586)
...|+.+....++..+.+.. +..+...++. ++...|+.+.+..+++.+.. .+.. -|. ++.-+|+-.|+..
T Consensus 501 vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH
T ss_pred cccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH
Confidence 56677777777777766542 2233333333 33356776666666665542 3332 222 3445677788877
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCH-HHHHHHHHh
Q 007871 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL-EQALNIVES 469 (586)
Q Consensus 391 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 469 (586)
...++++.+... ...+......+.-++...|+.+.+.++++.+.. ...|....-..+.-+....|.. .+++..+..
T Consensus 578 aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 578 AVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 777788888763 122222222333344445666666777766655 2345444444444444444443 577778887
Q ss_pred CCCCCCHHHHHHHHHH
Q 007871 470 MPMKPNLALWGTLLLA 485 (586)
Q Consensus 470 ~~~~p~~~~~~~l~~~ 485 (586)
+...++..+-...+.+
T Consensus 655 L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 655 LTKDPVDFVRQAAMIA 670 (963)
T ss_dssp HHTCSSHHHHHHHHHH
T ss_pred HccCCCHHHHHHHHHH
Confidence 7555666555444444
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.32 E-value=0.19 Score=48.02 Aligned_cols=69 Identities=13% Similarity=-0.036 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh-----CCCccCCCe
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK-----RKIKKETGR 547 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~ 547 (586)
...++..+...|++.++...++.+...+|-+...+..++.+|.+.|+..+|.+.|+++.+ .|+.|.+.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344566677889999999999999999999999999999999999999999998888743 488777654
No 243
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=93.25 E-value=3.3 Score=34.86 Aligned_cols=140 Identities=12% Similarity=0.134 Sum_probs=58.6
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCC
Q 007871 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGD 225 (586)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~ 225 (586)
|..+....+..+.+.|+.+....+.+.+..++...-...+.++...|..+..-.+.+.+..++...-...+.++ ...++
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL-~~~~~ 105 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVAL-GQIGD 105 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHH-HHHCC
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHH-HHhCc
Confidence 33333333444444444333333333333444444444445555555443333333333344444444444444 44444
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCC
Q 007871 226 ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286 (586)
Q Consensus 226 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 286 (586)
.+....+.+.+..++..+....+.++.+.++.+....+...+..++...-...+.++...|
T Consensus 106 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 106 ERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3333333344444454444444555554444333333333333344433333344444333
No 244
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.13 E-value=2.3 Score=32.76 Aligned_cols=140 Identities=11% Similarity=-0.006 Sum_probs=76.3
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 007871 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361 (586)
Q Consensus 282 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 361 (586)
+.-.|..++..++..+.... .+..-++.++.-....-+-+...+.++.+-+. .|.. .+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHH
Confidence 34466777777777776653 24445555555444444444444444443221 1211 22333333
Q ss_pred HHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCC
Q 007871 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGI 440 (586)
Q Consensus 362 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 440 (586)
...+-.+.. +.......+..+...|+-|.-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++-++ |+
T Consensus 81 i~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 81 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 333332221 2233444556666777777777777775432 5667777777777777777777777777776663 54
No 245
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.06 E-value=8.5 Score=39.05 Aligned_cols=303 Identities=11% Similarity=-0.062 Sum_probs=155.3
Q ss_pred hccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh---HHHHHHHHHHhCCCchHHHHHHHH
Q 007871 221 KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVF---SWSIMIDGYAQHGNPKEALYLFRE 297 (586)
Q Consensus 221 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~ 297 (586)
...|+...|..+...+..........++..+..-.. +........ ++.. .+...+.-+.+ .+++.|...+..
T Consensus 165 l~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~---~~~~~~~~~-~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~ 239 (618)
T 1qsa_A 165 MKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNT---VLTFARTTG-ATDFTRQMAAVAFASVAR-QDAENARLMIPS 239 (618)
T ss_dssp HHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGG---HHHHHHHSC-CCHHHHHHHHHHHHHHHH-HCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHh---HHHHHhccC-CChhhHHHHHHHHHHHHh-cCHHHHHHHHHh
Confidence 345666666666666532222233334433333222 233333222 2211 12222233333 478999999988
Q ss_pred HHHCCCCCCHHHHHHH----HHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-
Q 007871 298 MLCQGVRPDVISVMGA----ISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN- 372 (586)
Q Consensus 298 m~~~g~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~- 372 (586)
..+.+ ..+......+ .......+...++...+....... .+.....-.+....+.|+++.|...|..+....
T Consensus 240 ~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~ 316 (618)
T 1qsa_A 240 LAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK 316 (618)
T ss_dssp HHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG
T ss_pred hhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc
Confidence 87543 2233332222 223334443455566665544432 333334445555567899999999999998532
Q ss_pred --HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCC-Ch-----
Q 007871 373 --VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP-KL----- 444 (586)
Q Consensus 373 --~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~----- 444 (586)
.....=+..++...|+.++|..+|+.+... . +|..++.+ .+.|..-. ... ....+ ..
T Consensus 317 ~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~---~fYg~lAa-~~Lg~~~~-------~~~-~~~~~~~~~~~~~ 381 (618)
T 1qsa_A 317 EKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMVAA-QRIGEEYE-------LKI-DKAPQNVDSALTQ 381 (618)
T ss_dssp GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHHHH-HHTTCCCC-------CCC-CCCCSCCCCHHHH
T ss_pred ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---ChHHHHHH-HHcCCCCC-------CCC-CCCChhHHhhhcc
Confidence 222333556777889999999999998752 2 23333321 12221100 000 00001 00
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---CCcchHHHHHHHHH
Q 007871 445 EHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA---DDCGLYVLLSNIYA 521 (586)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~ 521 (586)
..-..-+..+...|....|...+.......+......+.......|.++.++....+....+. .-|..|...+.-+.
T Consensus 382 ~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a 461 (618)
T 1qsa_A 382 GPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYT 461 (618)
T ss_dssp SHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHH
T ss_pred ChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHH
Confidence 011123456778899999988777663334444444555556677888887766654333220 12334555665666
Q ss_pred hcCCchHHHHHHHHHHhCCCccCCC
Q 007871 522 DAGMWEHALRIRKMMRKRKIKKETG 546 (586)
Q Consensus 522 ~~g~~~~A~~~~~~m~~~~~~~~~~ 546 (586)
+.-.++.++-.--...+.+..|...
T Consensus 462 ~~~gv~~~ll~Ai~~~ES~f~p~a~ 486 (618)
T 1qsa_A 462 SGKEIPQSYAMAIARQESAWNPKVK 486 (618)
T ss_dssp TTSSSCHHHHHHHHHHHHTTCTTCB
T ss_pred HHcCCCHHHHHHHHHHhCCCCCCCc
Confidence 6656665554433445666665543
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.94 E-value=0.5 Score=38.03 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 007871 444 LEHYSCLVDLLSRAGELEQALNIVESMPMK 473 (586)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 473 (586)
.+.--.+..+|.+.|++++|+.+++.++.+
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 344445667777777777777777776543
No 247
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=92.92 E-value=3.7 Score=34.54 Aligned_cols=82 Identities=13% Similarity=0.081 Sum_probs=36.5
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 007871 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAK 253 (586)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 253 (586)
..++...-...+.++.+.|..+....+...+..++...-...+.++ ...++.+....+.+.+..++..+....+.++.+
T Consensus 86 ~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL-~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 86 KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFAL-GEIGDERAVEPLIKALKDEDGWVRQSAADALGE 164 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHH-HHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHH-HHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3344444444444444444443333333333344444434444444 444443333333344444555555555555555
Q ss_pred cCC
Q 007871 254 IGD 256 (586)
Q Consensus 254 ~g~ 256 (586)
.|.
T Consensus 165 ~~~ 167 (201)
T 3ltj_A 165 IGG 167 (201)
T ss_dssp HCS
T ss_pred hCc
Confidence 554
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.17 E-value=0.79 Score=36.92 Aligned_cols=123 Identities=11% Similarity=0.022 Sum_probs=63.5
Q ss_pred CCCCCCHHH--HHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCCh-------HHHHHHHHHHhhcCCHHHHHHHHHhC--
Q 007871 402 EGIPKDDLI--FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL-------EHYSCLVDLLSRAGELEQALNIVESM-- 470 (586)
Q Consensus 402 ~g~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-- 470 (586)
.|+.|.... +..-+..+...|.++.|+-+.+.+..-.+..|+. .++..+++++...|++..|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 455565543 3334556677788888887777765532233331 34556677777778887777777664
Q ss_pred --CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 471 --PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 471 --~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
+.-+ +......+. . ...... -.. .+.+..+.+.++.+|.+.|++++|+.+++.+
T Consensus 92 ~~k~l~k~~s~~~~~~-~---~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG-N---SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC-------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCcccccc-c---cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1001 000000000 0 000000 000 1234467788999999999999999998765
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.77 E-value=2.5 Score=32.99 Aligned_cols=67 Identities=7% Similarity=-0.014 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 473 KPNLALWGTLLLACRNHQ---NVTLAEVVVEGLVELKAD-DCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 473 ~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.|+..+--.+.+++.++. +..+++.+++.+...+|. .....+.|+-++.+.|+|++|+++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 355555555555555544 334556666666665553 3445555666666666666666666666553
No 250
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=91.67 E-value=5.6 Score=33.74 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=89.1
Q ss_pred hHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhH
Q 007871 164 GCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243 (586)
Q Consensus 164 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~ 243 (586)
+....+.+.+..++...-...+..+.+.|..+..-.+.+.+..+|...-...+.++ ...++.+....+.+.+..++..+
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL-~~~~~~~~~~~L~~~l~~~~~~v 97 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADAL-GQIGDERAVEPLIKALKDEDGWV 97 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHH-HHHCCGGGHHHHHHHTTCSSHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHH-HhhCCHHHHHHHHHHHcCCCHHH
Confidence 33344444455566666666677777777755555555555566665555556666 56666555555555566667777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 007871 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322 (586)
Q Consensus 244 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~ 322 (586)
....+.++.+.|+.+....+...+..++...-...+.++...|+.+ +...+..+.+ .++...-...+.++.+.+.
T Consensus 98 r~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 98 RQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 7777777777776555555555555566655555566665555533 3444444432 3455555555555555554
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.21 E-value=10 Score=35.87 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=10.9
Q ss_pred HHHHhhccCCHHHHHHHHHHhHH
Q 007871 414 VLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
++..|...|++.+|.+++..+.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444444555555444444444
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.83 E-value=1.7 Score=33.50 Aligned_cols=45 Identities=11% Similarity=0.043 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 494 LAEVVVEGLVELKAD-DCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 494 ~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
+++.+++.+.+.+|. ....+..|+-++.+.|+|++|+++.+.+.+
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344444444444432 233444444445555555555554444443
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.56 E-value=10 Score=34.75 Aligned_cols=166 Identities=16% Similarity=0.082 Sum_probs=101.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHhhc
Q 007871 345 QTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC----FAQMETEGIPKDDLIFLGVLIACSH 420 (586)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~l~~~~~~ 420 (586)
|.++..=|.+.+++++|.+++.. -...+.+.|+...|.++ ++-..+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44555667888999999888643 23445666776555443 4556667888888888888777655
Q ss_pred cCC--HHHHHHHHHHhHH---hhCC--CCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 007871 421 SGL--ATEGYRIFQSMKR---HCGI--EPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT 493 (586)
Q Consensus 421 ~g~--~~~A~~~~~~~~~---~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 493 (586)
... ... ..+.+++++ +.|- .-++.....++..|.+.+++.+|...|= ....+.+..+..++.-+...+.
T Consensus 107 ~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~-- 182 (336)
T 3lpz_A 107 FQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE-- 182 (336)
T ss_dssp SCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC--
T ss_pred CCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC--
Confidence 432 221 223333222 1232 2367888889999999999999998884 3334444566555544333332
Q ss_pred HHHHHHHHHHhcCCCCcchHHH-HHHHHHhcCCchHHHHHHHHHHh
Q 007871 494 LAEVVVEGLVELKADDCGLYVL-LSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 494 ~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
|.....|.. .+--|.-.|+...|..+++...+
T Consensus 183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222222222 23347788899999988877664
No 254
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.97 E-value=1.8 Score=31.31 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 007871 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452 (586)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 452 (586)
+.=+..+-++.+....+.|++......+.+|.+.+++..|.++++.++.+++.. ..+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 344566677777777899999999999999999999999999999998865444 456766654
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.57 E-value=12 Score=34.03 Aligned_cols=168 Identities=13% Similarity=0.029 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHH----HHHHHHCCCCCCHHHHHHHHHHHh
Q 007871 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL----FREMLCQGVRPDVISVMGAISACA 318 (586)
Q Consensus 243 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~m~~~g~~~~~~~~~~l~~~~~ 318 (586)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|.++ ++-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345567778888888888876433 23445666776655554 555566788899888888888776
Q ss_pred ccCChh-HHHHHHHHH----HHcCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhc---CC
Q 007871 319 QVGALD-LGKWIHVFM----KRSRI--TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN---GF 388 (586)
Q Consensus 319 ~~~~~~-~a~~~~~~~----~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 388 (586)
.-...+ .-..+.+.+ .+.|- .-++.....+...|.+.|++.+|...|-.-...+...+..++.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 543222 123333333 33332 236678888899999999999988877522222344444444333332 33
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
..++--.+ ...+--|.-.|+...|..+++...+
T Consensus 184 ~~e~dlf~---------------~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTVAEFF---------------SRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHH---------------HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cchHHHHH---------------HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 22221111 1112234456788888888887655
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.71 E-value=14 Score=33.62 Aligned_cols=169 Identities=9% Similarity=-0.002 Sum_probs=100.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHhhc
Q 007871 345 QTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK----CFAQMETEGIPKDDLIFLGVLIACSH 420 (586)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~m~~~g~~p~~~~~~~l~~~~~~ 420 (586)
|.++..=|.+.+++++|.+++.. -...+.+.|+...|.. +++-..+.+.+++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44555667778888888888643 2344566777666554 45556667888888888888777654
Q ss_pred cCCHH-HHHHHHHHhHH---hhCC--CCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC
Q 007871 421 SGLAT-EGYRIFQSMKR---HCGI--EPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH---QN 491 (586)
Q Consensus 421 ~g~~~-~A~~~~~~~~~---~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---~~ 491 (586)
-...+ .=.++++.+++ +.+- .-++.....++..|.+.|++.+|...|=-. ...+...+..++.-+... |.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~-~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG-THDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCccHHHHHHHHHHHHHhcCCCC
Confidence 22111 11233333322 1222 236788889999999999999998877632 112344554444443333 33
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 492 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
..++--++- ..+--|.-.|+...|..+++...+.
T Consensus 184 ~~e~dlf~~--------------RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTVAEFFS--------------RLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHH--------------HHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred cchHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 333222211 1222466788999999998877543
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.40 E-value=3.7 Score=39.09 Aligned_cols=72 Identities=13% Similarity=0.160 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH----hhCCCCChHHHHH
Q 007871 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR----HCGIEPKLEHYSC 449 (586)
Q Consensus 377 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~ 449 (586)
..++..+...|++++++..+..+... .+-+...+..++.++...|+..+|.+.|+.+.+ +.|+.|+..+-..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34556667778888888777777663 244666788888888888888888887777544 3577777765433
No 258
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.24 E-value=3.6 Score=42.70 Aligned_cols=52 Identities=19% Similarity=0.147 Sum_probs=38.1
Q ss_pred hhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 007871 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471 (586)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 471 (586)
|...|+++.|+++-++... -.|.+-.+|..|..+|...|+++.|+-.++.++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4567778888887777766 344566778888888888888888887777764
No 259
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.37 E-value=33 Score=36.51 Aligned_cols=114 Identities=11% Similarity=0.082 Sum_probs=54.4
Q ss_pred HHhcCCHHHHHHHHhccCC-CCHhH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HH---HHHHHHhhccCCH
Q 007871 352 YMKCGSLDEARRIFYSMTK-KNVIS--YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL-IF---LGVLIACSHSGLA 424 (586)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~-~~~~~--~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~---~~l~~~~~~~g~~ 424 (586)
+.-.|+.+....++..+.+ .+... .-.+.-++...|+.+.+..+++.+... .++. -| ..+.-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCH
Confidence 3344555555555544321 12122 222223344566666666666666552 2222 12 2334456667776
Q ss_pred HHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 425 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
....+++..+.. ....+......+.-++...|+.+.+..+++.+
T Consensus 577 ~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L 620 (963)
T 4ady_A 577 SAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620 (963)
T ss_dssp HHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred HHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 666667766665 22233333333333444455555555555443
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.20 E-value=4.1 Score=29.46 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=40.0
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 469 SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 469 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
.+..-|++......+.+|.+.+|+..|.++++-+...-.+...+|..++
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3456699999999999999999999999999988877655566677665
No 261
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=87.11 E-value=16 Score=32.55 Aligned_cols=19 Identities=5% Similarity=-0.188 Sum_probs=7.9
Q ss_pred CCChhhHHHHHHHHHhCCC
Q 007871 175 IKDLVSWNLVLRGFVECGE 193 (586)
Q Consensus 175 ~~~~~~~~~l~~~~~~~g~ 193 (586)
.++...-...+.++...|.
T Consensus 139 d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVIND 157 (280)
T ss_dssp CSCHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 3444444444444444444
No 262
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.83 E-value=24 Score=34.22 Aligned_cols=244 Identities=11% Similarity=0.058 Sum_probs=141.4
Q ss_pred CCCchHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHH----HHHHhc
Q 007871 285 HGNPKEALYLFREMLCQ-----GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI----DMYMKC 355 (586)
Q Consensus 285 ~~~~~~A~~~~~~m~~~-----g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~ 355 (586)
.|+++.|++.+-.+.+. +..........++..|...++++.....+..+.+..-.... ....++ ......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~-ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL-SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH-HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHhcC
Confidence 37889999888777642 34456677888999999999999888877666544322222 122233 222222
Q ss_pred CC--HHHHHHHHhccCC---C-------CHhHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCCH---HHHHHHHHHh
Q 007871 356 GS--LDEARRIFYSMTK---K-------NVISYNVMIAGLGMNGFGEEALKCFAQMET--EGIPKDD---LIFLGVLIAC 418 (586)
Q Consensus 356 g~--~~~a~~~~~~~~~---~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~--~g~~p~~---~~~~~l~~~~ 418 (586)
.. .+.-..+.+.+.. . .......|...|...|++.+|..++..+.. .|..+.. ..+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 32 2233344443331 1 112345677888899999999999998764 2322221 3566667788
Q ss_pred hccCCHHHHHHHHHHhHHh-hCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 007871 419 SHSGLATEGYRIFQSMKRH-CGIEPK----LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT 493 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~-~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 493 (586)
...+++.+|..++.++... ....++ ...+...+..+...+++.+|...|.++ ...+...++..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~------------~~~~~~~~d~~ 255 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI------------YQTDAIKSDEA 255 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH------------HHHHHHHSCHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------------HhcccccCCHH
Confidence 8899999999988887531 112222 245666777888888888887776554 33444555555
Q ss_pred HHHHHHHHHHh---cCCCCcchHHHHHHHHHhcC--CchHHHHHHHHHHhCCC
Q 007871 494 LAEVVVEGLVE---LKADDCGLYVLLSNIYADAG--MWEHALRIRKMMRKRKI 541 (586)
Q Consensus 494 ~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~~~ 541 (586)
.....+..++- +.|.++.--..+...+.... ....-..+.+......+
T Consensus 256 ~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L 308 (445)
T 4b4t_P 256 KWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNEL 308 (445)
T ss_dssp HHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchH
Confidence 44444444333 34555544444544444322 12222334444445444
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.26 E-value=20 Score=32.85 Aligned_cols=167 Identities=13% Similarity=0.049 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHH----HHHHHHCCCCCCHHHHHHHHHHHhc
Q 007871 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL----FREMLCQGVRPDVISVMGAISACAQ 319 (586)
Q Consensus 244 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~m~~~g~~~~~~~~~~l~~~~~~ 319 (586)
|.++..-|.+.+++++|.+++.. -...+.+.|+...+.++ ++-..+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44566778888888888876433 23445566766554444 3555667888888888888887766
Q ss_pred cCChh-HHHHHHHHH----HHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHH
Q 007871 320 VGALD-LGKWIHVFM----KRSR--ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392 (586)
Q Consensus 320 ~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 392 (586)
...-+ .-..+.+.+ .+.| ..-++.....+...|.+.+++.+|..-|-.-.++.+..+..++.-+...+...++
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH
Confidence 55322 112233333 3333 2346677788889999999999998887432223335554444433333322211
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 393 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
-- .. ...+--|.-.++...|..+++...+
T Consensus 187 dl--------------fi-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 PL--------------YC-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HH--------------HH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HH--------------HH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 11 11 1222234556788888777666554
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.32 E-value=13 Score=41.17 Aligned_cols=59 Identities=14% Similarity=-0.082 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCcc----hHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVELKA-DDCG----LYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
|..++..+.+.+.++.+.++.+.+++..+ ++.. .|..+...+...|+|++|...+-.+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 34444445555555555555555554332 2211 34445555555555555555554443
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.56 E-value=9.5 Score=31.84 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 007871 492 VTLAEVVVEGLVELK--ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543 (586)
Q Consensus 492 ~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 543 (586)
...+..+|..+...+ ...+..|...+..+...|++.+|.++|+.-++.+.+|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 334444444444322 3334444444444455555555555554444444433
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.11 E-value=2.5 Score=37.16 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=30.9
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007871 454 LSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509 (586)
Q Consensus 454 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 509 (586)
+.+.|++++|++.+..- +..| |...-..++..+|-.|++++|..-++.+.+++|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 44556666665554432 3333 44455555555666666666666666666666553
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.56 E-value=6.9 Score=30.05 Aligned_cols=62 Identities=19% Similarity=0.219 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 007871 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452 (586)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 452 (586)
.=+..+-++.+....+.|++......+.+|.+.+|+..|.++++-++.+++.. ..+|..++.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~--~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc--hhhHHHHHH
Confidence 34556666777777899999999999999999999999999999998865443 556776665
No 268
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.15 E-value=35 Score=33.02 Aligned_cols=195 Identities=11% Similarity=-0.000 Sum_probs=117.2
Q ss_pred cCCHHHHHHHHhhCCC---------CChhHHHHHHHHHHhCCCchHHHHHHHHHHHC-CCCCCHHHHHHHHHHH----hc
Q 007871 254 IGDLVAAQQLFNEMPE---------RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ-GVRPDVISVMGAISAC----AQ 319 (586)
Q Consensus 254 ~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~~~~~~~~~l~~~~----~~ 319 (586)
.|+++.|.+.+-.+.+ ........++..|...|+++...+.+.-+.+. |..+.. ...++..+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhc
Confidence 3678888877755532 23456778889999999999988877766543 433322 23344333 23
Q ss_pred cCChhHHHHHHHHHHHc------C-CCC---chhHHHHHHHHHHhcCCHHHHHHHHhccCC----C-----CHhHHHHHH
Q 007871 320 VGALDLGKWIHVFMKRS------R-ITM---DMIVQTALIDMYMKCGSLDEARRIFYSMTK----K-----NVISYNVMI 380 (586)
Q Consensus 320 ~~~~~~a~~~~~~~~~~------~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-----~~~~~~~l~ 380 (586)
....+.... ....+. | +-. .......|...|...|++.+|..++..+.. . -+..+..-+
T Consensus 107 ~~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 107 SKSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp HCTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred CCchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 333332111 111111 1 111 223456788999999999999999988751 1 134566678
Q ss_pred HHHHhcCChHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 007871 381 AGLGMNGFGEEALKCFAQMET----EGIPKDD--LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454 (586)
Q Consensus 381 ~~~~~~~~~~~A~~~~~~m~~----~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (586)
+.|...+++.+|..++++... ....|+. ..+...+..+...+++.+|.+. |..+...+
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~----------------y~e~~~~~ 248 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY----------------LQEIYQTD 248 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH----------------HHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH----------------HHHHHhcc
Confidence 889999999999999988642 2222222 2344555556666777666443 44455666
Q ss_pred hhcCCHHHHHHHHH
Q 007871 455 SRAGELEQALNIVE 468 (586)
Q Consensus 455 ~~~g~~~~A~~~~~ 468 (586)
...++.......+.
T Consensus 249 ~~~~d~~~~~~~L~ 262 (445)
T 4b4t_P 249 AIKSDEAKWKPVLS 262 (445)
T ss_dssp HHHSCHHHHHHHHH
T ss_pred cccCCHHHHHHHHH
Confidence 66676655544443
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.04 E-value=14 Score=26.53 Aligned_cols=79 Identities=13% Similarity=0.059 Sum_probs=55.4
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007871 321 GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME 400 (586)
Q Consensus 321 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 400 (586)
...++|..|-+.+...+. ...+-..-+..+.+.|++++|..+.+...-||...|-+|... +.|-.+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 345666666666666553 222222334556788999999999998888999988777543 6788888888887777
Q ss_pred HCC
Q 007871 401 TEG 403 (586)
Q Consensus 401 ~~g 403 (586)
..|
T Consensus 96 ~sg 98 (115)
T 2uwj_G 96 GSS 98 (115)
T ss_dssp TCS
T ss_pred hCC
Confidence 765
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.82 E-value=28 Score=30.60 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=25.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 383 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
..+.|+.++++.....-++. -+-|...-..++.-+|-.|++++|.+-++.+.+
T Consensus 7 ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34445555555555444442 122333344444455555555555555554444
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.82 E-value=11 Score=29.05 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=41.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 467 VESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 467 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
+-.+..-|++......+.+|.+.+|+..|.++++-+...-.+...+|..++
T Consensus 79 l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 79 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 334456799999999999999999999999999998887655566777665
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.45 E-value=15 Score=26.46 Aligned_cols=79 Identities=10% Similarity=0.065 Sum_probs=55.1
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007871 321 GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME 400 (586)
Q Consensus 321 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 400 (586)
...++|..|-+.+...+. ...+-..-+..+.+.|++++|..+.+...-||...|-+|... +.|-.+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 345666666666666553 222222334556788999999999999988999988877553 5677788887777777
Q ss_pred HCC
Q 007871 401 TEG 403 (586)
Q Consensus 401 ~~g 403 (586)
..|
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 665
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=79.44 E-value=18 Score=28.70 Aligned_cols=49 Identities=14% Similarity=0.095 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcC--CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 007871 495 AEVVVEGLVELK--ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543 (586)
Q Consensus 495 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 543 (586)
+..+|..+...+ ...+..|...+..+...|++.+|.++|+.-++.+.+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 677777777644 5566778888888888888888888888887777665
No 274
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.25 E-value=86 Score=34.73 Aligned_cols=82 Identities=11% Similarity=0.021 Sum_probs=44.0
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHcCCCCch----hHHHHHHHHHHhcCCHHHHHHHHhccCCC--CHhHHHHHHHH
Q 007871 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDM----IVQTALIDMYMKCGSLDEARRIFYSMTKK--NVISYNVMIAG 382 (586)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~ 382 (586)
-|..++..+.+.+.++.+.++-....+...+.+. ..|..++..+...|++++|...+-.+... -......|+..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~ 980 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQ 980 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3555666666666666666665555443222111 24556666666777777776666554321 22344555555
Q ss_pred HHhcCChH
Q 007871 383 LGMNGFGE 390 (586)
Q Consensus 383 ~~~~~~~~ 390 (586)
++..|..+
T Consensus 981 lce~~~~~ 988 (1139)
T 4fhn_B 981 LTKQGKIN 988 (1139)
T ss_dssp HHHHCCHH
T ss_pred HHhCCChh
Confidence 55555443
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.05 E-value=27 Score=33.55 Aligned_cols=93 Identities=10% Similarity=-0.059 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHHH--HH
Q 007871 344 VQTALIDMYMKCGSLDEARRIFYSMTK------KNVISYNVMIAGLGMNGFGEEALKCFAQMET---EGIPKDDLI--FL 412 (586)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~---~g~~p~~~~--~~ 412 (586)
+...+...|.+.|+++.|.+.|.++.. .-...+-..+..+...+++..+...+.+... .+..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 344566666666766666666666542 1234455556666666666666666665543 222222211 11
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHH
Q 007871 413 GVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
.-+..+...+++..|.+.|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 112223445666666666655554
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.92 E-value=6.5 Score=37.97 Aligned_cols=96 Identities=7% Similarity=0.003 Sum_probs=54.5
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhh-CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCCHHHHHH---
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRHC-GIEPKLEHYSCLVDLLSRAGELEQALNIVESMP----MKPNLALWGT--- 481 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~--- 481 (586)
+...+...|.+.|+++.|.+.+.++...+ +...-...+..+++.+...+++..+...++++. ..++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45566677777777777777777776632 122234566666777777777777777766651 1122221111
Q ss_pred -HHHHHHhcCChHHHHHHHHHHHhc
Q 007871 482 -LLLACRNHQNVTLAEVVVEGLVEL 505 (586)
Q Consensus 482 -l~~~~~~~~~~~~a~~~~~~~~~~ 505 (586)
.+..+...+++..|-..|-.+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 111234556677776666655443
No 277
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.73 E-value=21 Score=25.69 Aligned_cols=76 Identities=14% Similarity=0.034 Sum_probs=53.2
Q ss_pred CCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC
Q 007871 126 MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205 (586)
Q Consensus 126 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 205 (586)
...++|..|-+.+...|. ...+-..-+..+.+.|++++|..+.+...-||...|-++.. .+.|..+++...+..+.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456788888888877653 33333344556778899999999998888888888876643 46677777776665554
No 278
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.89 E-value=22 Score=25.60 Aligned_cols=76 Identities=13% Similarity=-0.007 Sum_probs=51.6
Q ss_pred CCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC
Q 007871 126 MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205 (586)
Q Consensus 126 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 205 (586)
...++|..|-+.+...|. ...+-..-+..+.+.|++++|..+.+...-||...|-++.. .+.|..+++...+..+.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356788888888777553 33333344556778888888888888888888888766643 45666666666665554
No 279
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=73.40 E-value=28 Score=28.00 Aligned_cols=49 Identities=12% Similarity=0.028 Sum_probs=27.6
Q ss_pred HHHHHHHHHhc--CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 007871 495 AEVVVEGLVEL--KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543 (586)
Q Consensus 495 a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 543 (586)
+..+|..+... +...+..|...+..+...|++.+|.++|+.-++.+.+|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 44455555543 24445555666666666666666666666666555544
No 280
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=61.88 E-value=84 Score=27.65 Aligned_cols=47 Identities=13% Similarity=-0.071 Sum_probs=17.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCC
Q 007871 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286 (586)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 286 (586)
+..+....+.++.+.|..+....+...+..++...-...+.++...|
T Consensus 36 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 36 NSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 33333333444444443322222333333344433333334444433
No 281
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=61.88 E-value=35 Score=30.38 Aligned_cols=110 Identities=8% Similarity=-0.098 Sum_probs=50.0
Q ss_pred ccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCccc--HHHHHHHHhccCCchHHH
Q 007871 55 TSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYT--YPFVLKACGVLMGLVEGT 132 (586)
Q Consensus 55 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~ 132 (586)
.+.. |+.+-+..+++.-..++...-.+.+...+..|+.+-+ +.+.+.|..++... -.+.+...+..|+.+-
T Consensus 38 A~~~-g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~-- 110 (285)
T 3kea_A 38 AIAD-NNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAVDSGNMQT-- 110 (285)
T ss_dssp HHHT-TCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH--
T ss_pred HHHc-CCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHH--
Confidence 3445 7777777777665332222112334444555665433 33334554444321 1122333334455443
Q ss_pred HHHHHHHHhCCCCchhH---HHHHHHHHHhcCChhHHHHHhccC
Q 007871 133 EIHGEVVKMGFLCDVFV---VNGLIGMYSKCGHMGCARSVFEGS 173 (586)
Q Consensus 133 ~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~~ 173 (586)
++.+.+.|..++... +...+...+..|+.+-+..+++..
T Consensus 111 --v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g 152 (285)
T 3kea_A 111 --VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI 152 (285)
T ss_dssp --HHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred --HHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 333444454443321 133444455566666555555543
No 282
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=56.08 E-value=63 Score=26.69 Aligned_cols=71 Identities=20% Similarity=0.140 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCCCCCH--HHH-----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 007871 460 LEQALNIVESMPMKPNL--ALW-----GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530 (586)
Q Consensus 460 ~~~A~~~~~~~~~~p~~--~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 530 (586)
++.|+.+++.+...-+. ... ...+..|.+.|.+++|.+++++....++.+......|..+-.+...+..-.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~l 171 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFF 171 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHH
Confidence 45677777777433221 111 123345888888888888888887777777767777766655555544443
No 283
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=55.50 E-value=83 Score=27.43 Aligned_cols=46 Identities=7% Similarity=-0.040 Sum_probs=20.8
Q ss_pred CChhHHHHHHHHHHHcCCCCchhH--HHHHHHHHHhcCCHHHHHHHHh
Q 007871 321 GALDLGKWIHVFMKRSRITMDMIV--QTALIDMYMKCGSLDEARRIFY 366 (586)
Q Consensus 321 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~ 366 (586)
++......+.+.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 333344455555555554443211 1122333445566655555555
No 284
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=53.53 E-value=98 Score=25.82 Aligned_cols=57 Identities=14% Similarity=0.090 Sum_probs=38.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC
Q 007871 386 NGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443 (586)
Q Consensus 386 ~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 443 (586)
.+...++..+|..|...|+-... .-|......+...|++.+|.++|+.-++. +-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 34456777888888777665543 45666666677778888888888877773 55553
No 285
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=53.06 E-value=1.4e+02 Score=28.23 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=8.6
Q ss_pred HHHhcCChhHHHHHhcc
Q 007871 156 MYSKCGHMGCARSVFEG 172 (586)
Q Consensus 156 ~~~~~g~~~~a~~~~~~ 172 (586)
..+..|+.+.+..+++.
T Consensus 119 ~A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 119 IAAREGHVETVLALLEK 135 (437)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHhC
Confidence 34445555555555543
No 286
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=52.77 E-value=1e+02 Score=27.92 Aligned_cols=60 Identities=12% Similarity=0.091 Sum_probs=42.6
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 467 VESMPMKPN--LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 467 ~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
|...+.+|. ..+....+..+.+.+++..|..+.+++++++|... ..++|.+++....+.+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 444455552 34566777778999999999999999999998522 3355777777766543
No 287
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=52.64 E-value=71 Score=27.91 Aligned_cols=81 Identities=14% Similarity=0.141 Sum_probs=38.4
Q ss_pred HHHHHhcCCHHHHHHHHhhCC-C---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccC
Q 007871 248 IDGYAKIGDLVAAQQLFNEMP-E---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS--VMGAISACAQVG 321 (586)
Q Consensus 248 ~~~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~--~~~l~~~~~~~~ 321 (586)
+...+..|+.+-+..+++... . .+..-.+.+.. .+..++......+++.+.+.|..++... -.+.+...+..|
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 230 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 230 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence 334455677766666665522 1 22222222222 2345555555667777777776554321 112233334455
Q ss_pred ChhHHHHH
Q 007871 322 ALDLGKWI 329 (586)
Q Consensus 322 ~~~~a~~~ 329 (586)
+.+-+..+
T Consensus 231 ~~~~v~~L 238 (285)
T 1wdy_A 231 HLGLVQRL 238 (285)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 55444333
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=49.17 E-value=86 Score=23.91 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCh---hHHHHHHHHHHhCCC--chHHHHHHHHHHHCCCCCCHHH
Q 007871 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNV---FSWSIMIDGYAQHGN--PKEALYLFREMLCQGVRPDVIS 309 (586)
Q Consensus 244 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~g~~~~~~~ 309 (586)
...++.-|...|+.++|.+.++++..|.- .+...+..++-+.++ .+.+..++..+.+.|+-+....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 45567777888888888888888876532 233444445554432 4567788888887776554443
No 289
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.56 E-value=47 Score=32.52 Aligned_cols=62 Identities=6% Similarity=0.000 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCCh---HHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL---EHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
..++.+++.|...+.++.|..+..+..--....++. .-+-.+++.+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 457777777777777777777777653200001111 11223456667777777777776654
No 290
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=46.12 E-value=68 Score=28.46 Aligned_cols=18 Identities=0% Similarity=-0.079 Sum_probs=8.2
Q ss_pred HHHHHhcCChhHHHHHhc
Q 007871 154 IGMYSKCGHMGCARSVFE 171 (586)
Q Consensus 154 i~~~~~~g~~~~a~~~~~ 171 (586)
+...+..|+.+-+..+++
T Consensus 66 L~~A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 66 LHQAATLEDTKIVKILLF 83 (285)
T ss_dssp HHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 333444455544444444
No 291
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=45.79 E-value=1.8e+02 Score=31.41 Aligned_cols=46 Identities=13% Similarity=-0.166 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCcc----hHHHHHHHHHhc
Q 007871 478 LWGTLLLACRNHQNVTLAEVVVEGLVELK-ADDCG----LYVLLSNIYADA 523 (586)
Q Consensus 478 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~----~~~~l~~~~~~~ 523 (586)
-|..++..+.+.+-++-+..+.+.+++.- ++++. .|..+..+.+..
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 45556666777777777777777777643 44443 344444444443
No 292
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=45.69 E-value=77 Score=25.05 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHhCCC--chHHHHHHHHHHHCCCCCCHHH
Q 007871 244 WNSMIDGYAKIGDLVAAQQLFNEMPERN---VFSWSIMIDGYAQHGN--PKEALYLFREMLCQGVRPDVIS 309 (586)
Q Consensus 244 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~g~~~~~~~ 309 (586)
...++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4566777788888888888888887653 2233444445544332 4567778888877776554443
No 293
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=45.41 E-value=1.2e+02 Score=25.13 Aligned_cols=62 Identities=10% Similarity=0.065 Sum_probs=41.5
Q ss_pred HHHHHHH---hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh-----hHHHHHHHHHHHcCCC
Q 007871 277 IMIDGYA---QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL-----DLGKWIHVFMKRSRIT 339 (586)
Q Consensus 277 ~l~~~~~---~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~ 339 (586)
.+|+++. +..|++.|+-.+-+|++.| .|....-..++.+....|.- ..|...++.....|.+
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3455553 5689999999999999999 77766666677676666543 2344445555555643
No 294
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=45.30 E-value=90 Score=23.79 Aligned_cols=65 Identities=15% Similarity=0.207 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCH---hHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHH
Q 007871 345 QTALIDMYMKCGSLDEARRIFYSMTKKNV---ISYNVMIAGLGMNGF--GEEALKCFAQMETEGIPKDDL 409 (586)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~ 409 (586)
...++.=|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 34567777788888888888888876522 233344444444432 355677777777776555443
No 295
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=43.69 E-value=1.5e+02 Score=25.00 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=12.5
Q ss_pred HhcCCCchhHHHHHHHhHhCCCCCC
Q 007871 87 YTQSSNPQKALSFYVNMKRKGLLVD 111 (586)
Q Consensus 87 ~~~~~~~~~A~~~~~~m~~~~~~~~ 111 (586)
.+..|+.+.+..+++.+.+.|..++
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 3445555555555555544444333
No 296
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=42.61 E-value=78 Score=21.53 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=40.7
Q ss_pred HHhHhCCCCCCcccHHHHHHHHhccC-CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 007871 101 VNMKRKGLLVDNYTYPFVLKACGVLM-GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162 (586)
Q Consensus 101 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 162 (586)
+.+.+.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34566777766544 45666666654 567788888888877666666666666777766664
No 297
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=40.85 E-value=2.4e+02 Score=26.64 Aligned_cols=200 Identities=9% Similarity=-0.015 Sum_probs=97.4
Q ss_pred HHccCchHHHHHHHHHHHcCCCCChhhH--hHHHHHhccCCCCChHHHHHHHhccCCCC---cchHHHHHHHHhcCCCch
Q 007871 20 QISKTTTHILQILAQLTTNDLITEPFTL--SQLLMSLTSPNTLNMDQAERLFNQIYQPN---TYMHNTMIRGYTQSSNPQ 94 (586)
Q Consensus 20 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~ 94 (586)
...|..+ +.+.+++.|..|+.... ...+. ..+.. |+.+-+.-+++.-..++ ...++. +...+..|+.+
T Consensus 22 a~~g~~~----~v~~Ll~~g~~~~~~~~~~~t~L~-~A~~~-g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~ 94 (437)
T 1n11_A 22 SFMGHLP----IVKNLLQRGASPNVSNVKVETPLH-MAARA-GHTEVAKYLLQNKAKVNAKAKDDQTP-LHCAARIGHTN 94 (437)
T ss_dssp HHHTCHH----HHHHHHHTTCCSCCSSSCCCCHHH-HHHHH-TCHHHHHHHHHHTCCSSCCCTTSCCH-HHHHHHHTCHH
T ss_pred HHCCCHH----HHHHHHHcCCCCCCCCCCCCCHHH-HHHHc-CCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHCCCHH
Confidence 3445554 55556666765553321 22333 34455 88988888887653322 222333 33334556554
Q ss_pred hHHHHHHHhHhCCCCCCccc--HHHHHHHHhccCCchHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCChhHHHHHh
Q 007871 95 KALSFYVNMKRKGLLVDNYT--YPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVF--VVNGLIGMYSKCGHMGCARSVF 170 (586)
Q Consensus 95 ~A~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~ 170 (586)
+++.+.+.|..|+... -...+...+..|+.+.+..+ .+.+..++.. .-...+...+..|+.+-+..++
T Consensus 95 ----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 166 (437)
T 1n11_A 95 ----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL----LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL 166 (437)
T ss_dssp ----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH----HHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH----HhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 3444444555444321 12234444566666555444 4444333211 1112345556778888777777
Q ss_pred ccCCCCC---hhhHHHHHHHHHhCCChhHHHHHHhhCCCC---ChhHHHHHHHHHhhccCCHHHHHHHHHhCC
Q 007871 171 EGSEIKD---LVSWNLVLRGFVECGEMGKAREVFDEMPQK---DAISWSIMIDGYRKKKGDISSARILFEHMP 237 (586)
Q Consensus 171 ~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~ 237 (586)
+.-..++ ....+ .+...+..|+.+-+..+++.-..+ +......+.. . ...|+.+-+..+++...
T Consensus 167 ~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A-~~~~~~~~~~~Ll~~g~ 236 (437)
T 1n11_A 167 ERDAHPNAAGKNGLT-PLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI-A-AKQNQVEVARSLLQYGG 236 (437)
T ss_dssp HTTCCTTCCCSSCCC-HHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHH-H-HHTTCHHHHHHHHHTTC
T ss_pred hCCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHH-H-HHcCCHHHHHHHHHcCC
Confidence 6544321 11112 233445566666555555543322 2222222222 2 45667776666666543
No 298
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=40.68 E-value=97 Score=26.32 Aligned_cols=31 Identities=10% Similarity=-0.025 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007871 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELK 506 (586)
Q Consensus 476 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 506 (586)
+..|......+...|++.+|..+|+..++..
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4444455555555555555555555555543
No 299
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=39.73 E-value=1.7e+02 Score=24.51 Aligned_cols=13 Identities=8% Similarity=-0.038 Sum_probs=6.6
Q ss_pred CChHHHHHHHhcc
Q 007871 60 LNMDQAERLFNQI 72 (586)
Q Consensus 60 ~~~~~A~~~~~~~ 72 (586)
|+.+....+++.-
T Consensus 20 g~~~~~~~Ll~~g 32 (240)
T 3eu9_A 20 GIYERCRELVEAG 32 (240)
T ss_dssp TCHHHHHHHHHTT
T ss_pred CChHHHHHHHHcC
Confidence 5555555555443
No 300
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.22 E-value=72 Score=31.28 Aligned_cols=68 Identities=9% Similarity=0.049 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC----CH--HHH-HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc
Q 007871 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKP----NL--ALW-GTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511 (586)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p----~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 511 (586)
...++.+++.|...+.++.|..++.+...+. +. ..| ..++..+.-.++|.+|.+.+..+...-|.+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 4567788888999999999999998874331 11 122 23344467788999999999888887776653
No 301
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.26 E-value=86 Score=27.02 Aligned_cols=85 Identities=8% Similarity=-0.035 Sum_probs=42.8
Q ss_pred HHHHHhcCCCchhHHHHHHHhHhC--CCCC----CcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007871 83 MIRGYTQSSNPQKALSFYVNMKRK--GLLV----DNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGM 156 (586)
Q Consensus 83 ll~~~~~~~~~~~A~~~~~~m~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 156 (586)
-++.+....++++|.+++++..+. +.++ ........+..-...+.-.-+..+.+++ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 367788888889888888876542 1221 1112222222222222222333333333 21 3344445555566
Q ss_pred HHhcCChhHHHHHh
Q 007871 157 YSKCGHMGCARSVF 170 (586)
Q Consensus 157 ~~~~g~~~~a~~~~ 170 (586)
+.+.|+.+.|.++|
T Consensus 101 L~rLg~~~~A~~lf 114 (235)
T 2d2s_A 101 MIKLGLPEQALDLF 114 (235)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHCCChhHHHHHH
Confidence 66667766666665
No 302
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=38.15 E-value=1.8e+02 Score=24.34 Aligned_cols=77 Identities=12% Similarity=0.076 Sum_probs=33.7
Q ss_pred hcCCCchhHHHHHHHhHhCCCCCCccc--HHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhH---HHHHHHHHHhcCC
Q 007871 88 TQSSNPQKALSFYVNMKRKGLLVDNYT--YPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV---VNGLIGMYSKCGH 162 (586)
Q Consensus 88 ~~~~~~~~A~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~ 162 (586)
++.|+.+.. +.+.+.|..++... -...+...+..|+.+ +++.+.+.|..++... -...+...+..|+
T Consensus 17 ~~~g~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~ 88 (240)
T 3eu9_A 17 TQYGIYERC----RELVEAGYDVRQPDKENVTLLHWAAINNRID----LVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 88 (240)
T ss_dssp HHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred HHcCChHHH----HHHHHcCCCcCCCCCCCCCHHHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCCChhHHHHHcCC
Confidence 455554443 33344554443321 122344445556554 3344444554332111 1223444455666
Q ss_pred hhHHHHHhcc
Q 007871 163 MGCARSVFEG 172 (586)
Q Consensus 163 ~~~a~~~~~~ 172 (586)
.+-+..+++.
T Consensus 89 ~~~v~~Ll~~ 98 (240)
T 3eu9_A 89 LSMVVQLMKY 98 (240)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 6666555554
No 303
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=37.93 E-value=1.8e+02 Score=24.39 Aligned_cols=82 Identities=6% Similarity=-0.015 Sum_probs=38.3
Q ss_pred HHHHccCchHHHHHHHHHHHcCCCCChhhH--hHHHHHhccCCCCChHHHHHHHhccCCCCc---chHHHHHHHHhcCCC
Q 007871 18 LLQISKTTTHILQILAQLTTNDLITEPFTL--SQLLMSLTSPNTLNMDQAERLFNQIYQPNT---YMHNTMIRGYTQSSN 92 (586)
Q Consensus 18 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~ 92 (586)
.....|+.+....+++.+.+.+..++.... ...+. ..+.. |+.+-+.-+++.-..++. .-++. +...+..|+
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~-~A~~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~ 91 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLH-LAVIT-TLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHRS 91 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHH-HHHHT-TCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHH-HHHHc-CCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcCC
Confidence 334456666666666666655544332211 12233 23345 677766666665433222 12222 333344555
Q ss_pred chhHHHHHHH
Q 007871 93 PQKALSFYVN 102 (586)
Q Consensus 93 ~~~A~~~~~~ 102 (586)
.+-+..+++.
T Consensus 92 ~~~~~~Ll~~ 101 (241)
T 1k1a_A 92 PTCLRALLDS 101 (241)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 5444444443
No 304
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=36.03 E-value=1.1e+02 Score=30.08 Aligned_cols=44 Identities=14% Similarity=0.072 Sum_probs=23.7
Q ss_pred CChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 007871 490 QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 490 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 533 (586)
..++.|..+|.++..+.|.+...|+.|+-+....|+.-+|.-+|
T Consensus 166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y 209 (497)
T 1ya0_A 166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYY 209 (497)
T ss_dssp TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHH
Confidence 34455555555555555555555555555555555554444333
No 305
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=35.94 E-value=1.2e+02 Score=25.19 Aligned_cols=46 Identities=24% Similarity=0.339 Sum_probs=34.2
Q ss_pred HHHHHHH---hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 007871 277 IMIDGYA---QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322 (586)
Q Consensus 277 ~l~~~~~---~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~ 322 (586)
.+|+++. +..|++.|+-.+-+|++.|-.|....-..++.+....|.
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3455554 568999999999999999987777776667766655553
No 306
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=35.75 E-value=86 Score=24.80 Aligned_cols=65 Identities=15% Similarity=0.207 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCH---hHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHH
Q 007871 345 QTALIDMYMKCGSLDEARRIFYSMTKKNV---ISYNVMIAGLGMNGF--GEEALKCFAQMETEGIPKDDL 409 (586)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~ 409 (586)
...++.=|...|+.++|...++++..|.. .....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 34567777788888888888888876522 233344444444322 345677777777766555443
No 307
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.57 E-value=1.1e+02 Score=26.28 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=17.8
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 007871 441 EPKLEHYSCLVDLLSRAGELEQALNIVE 468 (586)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 468 (586)
.++.......+..+.+.|+.++|.++|=
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFL 115 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHH
Confidence 3444455556667777777777777664
No 308
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=34.60 E-value=1.2e+02 Score=21.59 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=42.2
Q ss_pred HHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCCchhHH
Q 007871 30 QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKAL 97 (586)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~ 97 (586)
.+++.+.+.|+- +..-... |. ..... ...+.|.++++.+++....+|..++.++...|+..-|.
T Consensus 25 ~vld~L~~~~vl-t~~~~e~-I~-~~~~~-t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIED-IQ-RAGSG-SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHH-HH-TSTTC-CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHH-HH-hccCC-ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 477788887743 2222222 33 22122 46889999999888888889999999987767655443
No 309
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=34.32 E-value=59 Score=24.62 Aligned_cols=18 Identities=11% Similarity=0.134 Sum_probs=7.3
Q ss_pred CChhHHHHHHHHHHhcCC
Q 007871 239 KDLISWNSMIDGYAKIGD 256 (586)
Q Consensus 239 ~~~~~~~~l~~~~~~~g~ 256 (586)
++..+....+.++.+.|+
T Consensus 85 ~~~~VR~~A~~aL~~~~~ 102 (131)
T 1te4_A 85 DSGFVRSGAARSLEQIGG 102 (131)
T ss_dssp CCTHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 333444444444444443
No 310
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=34.09 E-value=1.5e+02 Score=24.91 Aligned_cols=66 Identities=21% Similarity=0.298 Sum_probs=44.2
Q ss_pred HHHHHHHHHH---hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh-----hHHHHHHHHHHHcCCC
Q 007871 274 SWSIMIDGYA---QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL-----DLGKWIHVFMKRSRIT 339 (586)
Q Consensus 274 ~~~~l~~~~~---~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~ 339 (586)
.+..+|+++. +..|++.|+-++-+|++.|-.|....-..++.+....|.- ..|...++.....|.+
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3344556654 5689999999999999999888777777777776655542 2344445555555543
No 311
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=33.96 E-value=3e+02 Score=25.84 Aligned_cols=89 Identities=7% Similarity=-0.034 Sum_probs=49.0
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHH---HHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHH
Q 007871 441 EPKLEHYSCLVDLLSRAGELEQALNIVESMP--MKPNLALWG---TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515 (586)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 515 (586)
.|....+..++.+| ..+++.+...+++... ...|+.... .+..... +..+.++ ..|-..-.+..
T Consensus 253 ~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i--~~pYsrIsl~~ 321 (394)
T 3txn_A 253 GRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRI--IEPYSRVQVAH 321 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHH--HTTCSEEEHHH
T ss_pred CccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHH--hHhhceeeHHH
Confidence 35555555666654 5677877777777653 233443211 1111100 1111111 23555566777
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 516 LSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 516 l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
++..+.- ..+++...+-+|...|.-
T Consensus 322 iA~~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 322 VAESIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHHHHTC--CHHHHHHHHHHHHHTTSS
T ss_pred HHHHHCc--CHHHHHHHHHHHHHCCCe
Confidence 7766543 678999999999887753
No 312
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=32.39 E-value=1.5e+02 Score=24.94 Aligned_cols=20 Identities=25% Similarity=0.301 Sum_probs=13.1
Q ss_pred HHHHhhcCCHHHHHHHHHhC
Q 007871 451 VDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~ 470 (586)
+-.|.+.|.+++|.+++++.
T Consensus 121 V~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHH
Confidence 34556677777777777665
No 313
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=31.82 E-value=4.3e+02 Score=26.93 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=14.9
Q ss_pred hhcCCHHHHHHHHHhCCCCC
Q 007871 455 SRAGELEQALNIVESMPMKP 474 (586)
Q Consensus 455 ~~~g~~~~A~~~~~~~~~~p 474 (586)
...|+++.|++.+++.++-|
T Consensus 549 ~~~g~~~~AL~~i~~L~llP 568 (661)
T 2qx5_A 549 YFNKQWQETLSQMELLDLLP 568 (661)
T ss_dssp HHTTCHHHHHHHHHHTSCSC
T ss_pred HHcCCHHHHHHHHHhCCCCC
Confidence 56788888888888776555
No 314
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=31.63 E-value=1.9e+02 Score=22.80 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCCh
Q 007871 390 EEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444 (586)
Q Consensus 390 ~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 444 (586)
+++..+|..|...|+-... .-|......+...|++.+|.++|+.-++. +-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccHH
Confidence 3477788888877765544 45666666677788888888888887773 555643
No 315
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.32 E-value=1.6e+02 Score=27.03 Aligned_cols=85 Identities=7% Similarity=-0.051 Sum_probs=40.2
Q ss_pred ccCCCCChHHHHHHHhccCCCC---cchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHH
Q 007871 55 TSPNTLNMDQAERLFNQIYQPN---TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131 (586)
Q Consensus 55 ~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 131 (586)
.+.. |+.+.+..+++.-..++ ..-++.|.. .+..|+.+ +.+.+.+.|..++...-...+...+..|+.+-+
T Consensus 27 Aa~~-g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~-A~~~g~~~----~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v 100 (364)
T 3ljn_A 27 AARK-GQTDEVRRLIETGVSPTIQNRFGCTALHL-ACKFGCVD----TAKYLASVGEVHSLWHGQKPIHLAVMANKTDLV 100 (364)
T ss_dssp HHHH-TCHHHHHHHHHTTCCTTCCCTTCCCHHHH-HHHHCCHH----HHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHH
T ss_pred HHHc-CCHHHHHHHHHcCCCccccCCCCCcHHHH-HHHcCCHH----HHHHHHHCCCCccccCCCCHHHHHHHcCCHHHH
Confidence 3445 77777777776643322 222333333 33444443 333334444434432222334444556666666
Q ss_pred HHHHHHHHHhCCCC
Q 007871 132 TEIHGEVVKMGFLC 145 (586)
Q Consensus 132 ~~~~~~~~~~~~~~ 145 (586)
..+++.....|..+
T Consensus 101 ~~Ll~~~~~~~~~~ 114 (364)
T 3ljn_A 101 VALVEGAKERGQMP 114 (364)
T ss_dssp HHHHHHHHHHTCCH
T ss_pred HHHHHhccccCCCH
Confidence 66666554445443
No 316
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.37 E-value=1.4e+02 Score=23.27 Aligned_cols=59 Identities=8% Similarity=0.057 Sum_probs=28.2
Q ss_pred HHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCC
Q 007871 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459 (586)
Q Consensus 399 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (586)
+.+.|+++++.-.. ++..+...+..-.|.++++.+.++ +...+..|....++.+...|-
T Consensus 13 l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCC
Confidence 44555555543221 222222334444566666666553 434455555555555555554
No 317
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=29.34 E-value=2.1e+02 Score=23.96 Aligned_cols=15 Identities=7% Similarity=0.197 Sum_probs=7.1
Q ss_pred ccCCHHHHHHHHHhC
Q 007871 222 KKGDISSARILFEHM 236 (586)
Q Consensus 222 ~~g~~~~a~~~~~~~ 236 (586)
..|+.+-...+++..
T Consensus 120 ~~~~~~~~~~Ll~~g 134 (237)
T 3b7b_A 120 EYKHVDLVKLLLSKG 134 (237)
T ss_dssp HTTCHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHCC
Confidence 344555555554443
No 318
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=29.30 E-value=1.6e+02 Score=22.03 Aligned_cols=50 Identities=12% Similarity=-0.057 Sum_probs=23.4
Q ss_pred CCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 007871 110 VDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHM 163 (586)
Q Consensus 110 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 163 (586)
++...-...+.+++..++......+.. +.+ .++..+....+.++.+.|+.
T Consensus 54 ~~~~vR~~A~~aL~~~~~~~a~~~L~~-~L~---d~~~~VR~~A~~aL~~~~~~ 103 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNFQDERAVEPLIK-LLE---DDSGFVRSGAARSLEQIGGE 103 (131)
T ss_dssp SCHHHHHHHHHHHGGGCSHHHHHHHHH-HHH---HCCTHHHHHHHHHHHHHCSH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH-HHc---CCCHHHHHHHHHHHHHhCcH
Confidence 344444455555555555333222222 222 24555555555555555543
No 319
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=28.33 E-value=67 Score=22.66 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=15.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 512 LYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 512 ~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
.+...++.+.+.|+|++|++..++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 3445566677777777776555544
No 320
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.49 E-value=2.2e+02 Score=22.24 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=40.5
Q ss_pred HHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 007871 101 VNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHM 163 (586)
Q Consensus 101 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 163 (586)
+.+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 16 ~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 44667777755543 345566666667888999999998887666666655566777776643
No 321
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.45 E-value=80 Score=24.06 Aligned_cols=48 Identities=10% Similarity=0.015 Sum_probs=37.1
Q ss_pred hhHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCCh
Q 007871 13 NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNM 62 (586)
Q Consensus 13 ~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 62 (586)
..++.+|...+.+-.|.++++.+.+.+...+..|....|. .+... |-+
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~-~L~e~-Glv 61 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQ-SMASS-GLV 61 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHH-HHHTT-TSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHH-HHHHC-CCE
Confidence 4456677766778889999999998887778888888888 77777 643
No 322
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=26.42 E-value=2.7e+02 Score=23.11 Aligned_cols=12 Identities=8% Similarity=0.047 Sum_probs=7.3
Q ss_pred CChHHHHHHHhc
Q 007871 60 LNMDQAERLFNQ 71 (586)
Q Consensus 60 ~~~~~A~~~~~~ 71 (586)
|+.+....+++.
T Consensus 17 g~~~~v~~ll~~ 28 (231)
T 3aji_A 17 GKLDELKERILA 28 (231)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 666666666654
No 323
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.31 E-value=1.9e+02 Score=22.56 Aligned_cols=37 Identities=11% Similarity=0.190 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCC
Q 007871 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459 (586)
Q Consensus 422 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (586)
+..-.|.++++.+.++ +...+..|....++.+...|-
T Consensus 40 ~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 40 GTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp SSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCc
Confidence 3344555555555553 334444444444555555553
No 324
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=25.71 E-value=60 Score=20.72 Aligned_cols=13 Identities=31% Similarity=0.120 Sum_probs=6.8
Q ss_pred CChHHHHHHHhcc
Q 007871 60 LNMDQAERLFNQI 72 (586)
Q Consensus 60 ~~~~~A~~~~~~~ 72 (586)
|+.+.|.+.+-.|
T Consensus 37 gdvd~aI~~LL~m 49 (59)
T 1wgl_A 37 GNKDAAINSLLQM 49 (59)
T ss_dssp TCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcC
Confidence 4555555555444
No 325
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=25.50 E-value=2.6e+02 Score=22.37 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChH
Q 007871 391 EALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445 (586)
Q Consensus 391 ~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 445 (586)
.+..+|..|...|+-... ..|......+...|++.+|.++|+.-++. +-.|-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHH
Confidence 366678888877765544 45666666677778888888888887773 6666443
No 326
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=25.36 E-value=1.9e+02 Score=22.06 Aligned_cols=61 Identities=11% Similarity=0.170 Sum_probs=39.7
Q ss_pred HhHhCCCCCCcccHHHHHHHHhccC-CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 007871 102 NMKRKGLLVDNYTYPFVLKACGVLM-GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHM 163 (586)
Q Consensus 102 ~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 163 (586)
.+.+.|++++..- ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4566777766543 34555665555 6778899999988877666666655556666666643
No 327
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=25.08 E-value=2.1e+02 Score=22.33 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=42.6
Q ss_pred HHhHhCCCCCCcccHHHHHHHHhccC-CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 007871 101 VNMKRKGLLVDNYTYPFVLKACGVLM-GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHM 163 (586)
Q Consensus 101 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 163 (586)
+.+.+.|++++..- ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 44667787766544 34556666665 6778999999998877666666666666777777644
No 328
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.93 E-value=2.5e+02 Score=22.63 Aligned_cols=44 Identities=9% Similarity=0.046 Sum_probs=21.9
Q ss_pred ccCCCCChHHHHHHHhccCCCC---cchHHHHHHHHhcCCCchhHHHHH
Q 007871 55 TSPNTLNMDQAERLFNQIYQPN---TYMHNTMIRGYTQSSNPQKALSFY 100 (586)
Q Consensus 55 ~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~A~~~~ 100 (586)
.+.. |+.+-+.-+++....++ ...++.|. ..+..|+.+-+..++
T Consensus 46 A~~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~l~-~A~~~~~~~~~~~Ll 92 (201)
T 3hra_A 46 AVHN-NDIEIAKALIDRGADINLQNSISDSPYL-YAGAQGRTEILAYML 92 (201)
T ss_dssp HHHH-TCHHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHcCCCCCCCCCCCCCHHH-HHHHcCCHHHHHHHH
Confidence 3345 77777777777653332 22233333 334455554444444
No 329
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.35 E-value=2.2e+02 Score=22.90 Aligned_cols=17 Identities=0% Similarity=0.073 Sum_probs=10.1
Q ss_pred HHhcCChhHHHHHhccC
Q 007871 157 YSKCGHMGCARSVFEGS 173 (586)
Q Consensus 157 ~~~~g~~~~a~~~~~~~ 173 (586)
.+..|+.+....++..-
T Consensus 12 A~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 12 AANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHHTTCHHHHHHHHTCT
T ss_pred HHHhccHHHHHHHHHcC
Confidence 34566666666666543
No 330
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.26 E-value=98 Score=22.11 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=26.6
Q ss_pred CCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHH
Q 007871 356 GSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392 (586)
Q Consensus 356 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 392 (586)
...+.|.+++..+...+..+|..++.++...|+.+-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 3567788888877777777888888777666665444
No 331
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=24.10 E-value=1.9e+02 Score=23.02 Aligned_cols=69 Identities=10% Similarity=0.073 Sum_probs=46.6
Q ss_pred hhHHHHHHH-hHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHh--CCCCchhHHHHHHHHHHhcCCh
Q 007871 94 QKALSFYVN-MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKM--GFLCDVFVVNGLIGMYSKCGHM 163 (586)
Q Consensus 94 ~~A~~~~~~-m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~ 163 (586)
+.+++-+.. +.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 445544443 45678876553 356677777777888999999999887 6666666555556677777643
No 332
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=23.89 E-value=5.3e+02 Score=25.36 Aligned_cols=68 Identities=6% Similarity=-0.072 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHH----HHHHHH-hcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 473 KPNLALWGTLLLACRNHQNVTLAEV----VVEGLV-ELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 473 ~p~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
.+|......+...+...|-.++-++ .++..+ +..|++......|-..|.+.|++-+|.+++..+...+
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 3455555556666667665544322 111111 2346677777788888999999999999998887764
No 333
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.10 E-value=1.8e+02 Score=26.70 Aligned_cols=141 Identities=12% Similarity=-0.002 Sum_probs=71.5
Q ss_pred HccCchHHHHHHHHHHHcCCCCChhhH--hHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCCchhHHH
Q 007871 21 ISKTTTHILQILAQLTTNDLITEPFTL--SQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALS 98 (586)
Q Consensus 21 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~ 98 (586)
..|..+ +.+.+++.|..++.... ...|. ..+.. |+.+-+.-+++.-..++...-...+...+..|+.+-+..
T Consensus 29 ~~g~~~----~v~~Ll~~g~~~~~~d~~g~t~L~-~A~~~-g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~ 102 (364)
T 3ljn_A 29 RKGQTD----EVRRLIETGVSPTIQNRFGCTALH-LACKF-GCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVA 102 (364)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCCCTTCCCHHH-HHHHH-CCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHH
T ss_pred HcCCHH----HHHHHHHcCCCccccCCCCCcHHH-HHHHc-CCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHH
Confidence 335554 45556666665543221 12333 34455 889888888887754443222233444456777777766
Q ss_pred HHHHhHhCCCCCCc--------------------ccHHHHHHHHhccC--CchHHHHHHHHHHHhCCCCchhH--HHHHH
Q 007871 99 FYVNMKRKGLLVDN--------------------YTYPFVLKACGVLM--GLVEGTEIHGEVVKMGFLCDVFV--VNGLI 154 (586)
Q Consensus 99 ~~~~m~~~~~~~~~--------------------~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~--~~~li 154 (586)
+++.....|..++. .-.+. +...+..| +. ++++.+.+.|..++... -...+
T Consensus 103 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~----~~v~~Ll~~ga~~~~~d~~g~t~L 177 (364)
T 3ljn_A 103 LVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTA-LHWCVGLGPEYL----EMIKILVQLGASPTAKDKADETPL 177 (364)
T ss_dssp HHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCH-HHHHHHSCGGGH----HHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred HHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCH-HHHHHHcCCchH----HHHHHHHHcCCCCcccCCCCCCHH
Confidence 66664443433322 11222 33333444 33 34444555565544322 12233
Q ss_pred HHHHhcCChhHHHHHhcc
Q 007871 155 GMYSKCGHMGCARSVFEG 172 (586)
Q Consensus 155 ~~~~~~g~~~~a~~~~~~ 172 (586)
...+..|+.+-+..+++.
T Consensus 178 ~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 178 MRAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhc
Confidence 444566777766666654
No 334
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.52 E-value=95 Score=26.09 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=33.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 528 (586)
.+..|.+.|.+++|.+++++....+|.+......|..+-.+...+..
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~ 166 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHP 166 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccH
Confidence 44569999999999999999988665555555556555544444433
No 335
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.47 E-value=2.2e+02 Score=22.04 Aligned_cols=60 Identities=12% Similarity=0.009 Sum_probs=34.4
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 007871 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357 (586)
Q Consensus 297 ~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 357 (586)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 34556666665433 3344444445556677777777666655566555555666665554
No 336
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.41 E-value=3.4e+02 Score=22.56 Aligned_cols=138 Identities=9% Similarity=-0.039 Sum_probs=62.1
Q ss_pred HccCchHHHHHHHHHHHcCCCCChhhH--hHHHHHhccCCCCChHHHHHHHhccCCC---CcchHHHHHHHHhcCCCchh
Q 007871 21 ISKTTTHILQILAQLTTNDLITEPFTL--SQLLMSLTSPNTLNMDQAERLFNQIYQP---NTYMHNTMIRGYTQSSNPQK 95 (586)
Q Consensus 21 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~ 95 (586)
..|+.+ +.+.+++.|..++.... ...+. ..+.. |+.+-+.-+++....+ +....+.| ...+..|+.+
T Consensus 20 ~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~- 91 (237)
T 3b7b_A 20 EAGHVD----ICHMLVQAGANIDTCSEDQRTPLM-EAAEN-NHLEAVKYLIKAGALVDPKDAEGSTCL-HLAAKKGHYE- 91 (237)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCCCTTCCCHHH-HHHHT-TCHHHHHHHHTTTCCCCCCCTTSCCHH-HHHHHTTCHH-
T ss_pred HcCcHH----HHHHHHHcCCCcCccCCCCCCHHH-HHHHh-CCHHHHHHHHhCCCCCCCCCCCCCcHH-HHHHHcCCHH-
Confidence 445544 55556666655443211 12233 34455 7888877777765322 22222333 3333455543
Q ss_pred HHHHHHHhHhCC-CCCCccc--HHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCChhHHHHHh
Q 007871 96 ALSFYVNMKRKG-LLVDNYT--YPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFV--VNGLIGMYSKCGHMGCARSVF 170 (586)
Q Consensus 96 A~~~~~~m~~~~-~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~ 170 (586)
+++.+.+.| ..++... -...+...+..|+.+ +++.+.+.|..++... -...+...+..|+.+-+.-++
T Consensus 92 ---~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 164 (237)
T 3b7b_A 92 ---VVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL 164 (237)
T ss_dssp ---HHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHH
T ss_pred ---HHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 344444444 2222211 112233333445543 4445555665443321 112334445556666666665
Q ss_pred ccC
Q 007871 171 EGS 173 (586)
Q Consensus 171 ~~~ 173 (586)
+.-
T Consensus 165 ~~g 167 (237)
T 3b7b_A 165 AAK 167 (237)
T ss_dssp TTT
T ss_pred HcC
Confidence 543
No 337
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.40 E-value=1.6e+02 Score=23.53 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=31.7
Q ss_pred HHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhh-CCCCChHHHHHHHHHHhhcCCH
Q 007871 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC-GIEPKLEHYSCLVDLLSRAGEL 460 (586)
Q Consensus 399 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 460 (586)
+.+.|++++..- ..++..+...+..-.|.++++.+.++. +...+..|...-++.+...|-.
T Consensus 24 L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 24 LRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344566665532 223344444455566677777666520 2334555555555666666643
No 338
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.06 E-value=1.9e+02 Score=24.81 Aligned_cols=52 Identities=6% Similarity=-0.162 Sum_probs=26.0
Q ss_pred HhcCCCchhHHHHHHHhHhCCCCCCccc-------HHHHHHHHh--ccCCchHHHHHHHHH
Q 007871 87 YTQSSNPQKALSFYVNMKRKGLLVDNYT-------YPFVLKACG--VLMGLVEGTEIHGEV 138 (586)
Q Consensus 87 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~ 138 (586)
.++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3455666666666666655554444322 122332221 456666555555543
No 339
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=22.03 E-value=3.2e+02 Score=25.33 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=12.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC
Q 007871 246 SMIDGYAKIGDLVAAQQLFNEMPER 270 (586)
Q Consensus 246 ~l~~~~~~~g~~~~A~~~~~~~~~~ 270 (586)
.++.-|...|+.++|...++++..|
T Consensus 17 ~ii~EY~~~~D~~Ea~~~l~eL~~p 41 (364)
T 3l6a_A 17 TVVTEYLNSGNANEAVNGVREMRAP 41 (364)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCc
Confidence 3444455555555555555555444
No 340
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=21.74 E-value=4.3e+02 Score=23.58 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=7.7
Q ss_pred HHhcCCHHHHHHHHh
Q 007871 352 YMKCGSLDEARRIFY 366 (586)
Q Consensus 352 ~~~~g~~~~a~~~~~ 366 (586)
.+..|..+.+..++.
T Consensus 246 a~~~~~~~~v~~Ll~ 260 (337)
T 4g8k_A 246 AVEKKHLGLVQRLLE 260 (337)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhhhhHHHHHHHH
Confidence 344555555555544
No 341
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=20.90 E-value=2e+02 Score=29.36 Aligned_cols=63 Identities=19% Similarity=0.052 Sum_probs=46.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 007871 460 LEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM 525 (586)
Q Consensus 460 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 525 (586)
.+.|.++++-|+ ...............|++..|.++.+.++..+|+|..+...++.+|.+.|.
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 345666666664 222333344456688999999999999999999999998888888877764
No 342
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=20.88 E-value=2.9e+02 Score=21.27 Aligned_cols=12 Identities=8% Similarity=0.232 Sum_probs=8.0
Q ss_pred CChHHHHHHHhc
Q 007871 60 LNMDQAERLFNQ 71 (586)
Q Consensus 60 ~~~~~A~~~~~~ 71 (586)
|+.+....+++.
T Consensus 19 g~~~~v~~ll~~ 30 (165)
T 3twr_A 19 GDVETVKKLCTV 30 (165)
T ss_dssp TCHHHHHHHCCT
T ss_pred CCHHHHHHHHHc
Confidence 677777776654
No 343
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.83 E-value=3.2e+02 Score=24.56 Aligned_cols=92 Identities=12% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhCCCc--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007871 245 NSMIDGYAKIGDLVAAQQLFNEMPER---NVFSWSIMIDGYAQHGNP--KEALYLFREMLCQGVRPDVISVMGAISACAQ 319 (586)
Q Consensus 245 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~--~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 319 (586)
..++.-|...|+.++|.+.++++..| ...+...+..++-+.++. +.+..++..+.+.|+-+.......+...+..
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl~~ 249 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNE 249 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHh
Q ss_pred cCChh----HHHHHHHHHHHc
Q 007871 320 VGALD----LGKWIHVFMKRS 336 (586)
Q Consensus 320 ~~~~~----~a~~~~~~~~~~ 336 (586)
..+.. .|..++..+...
T Consensus 250 l~Dl~lDiP~A~~~la~~v~~ 270 (307)
T 2zu6_B 250 IPDINLDVPHSYSVLERFVEE 270 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHH
T ss_pred ccHhhcccccHHHHHHHHHHH
No 344
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=20.67 E-value=3.8e+02 Score=24.26 Aligned_cols=61 Identities=16% Similarity=0.140 Sum_probs=42.0
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 466 IVESMPMKPN--LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 466 ~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
+|...+..|. ..+....+....+.+++..|-.+.++++++.|... ..++|.+++....+.+
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 3444455552 34566677778999999999999999999987522 2245677777666543
No 345
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=20.39 E-value=3.1e+02 Score=22.69 Aligned_cols=24 Identities=0% Similarity=-0.267 Sum_probs=12.9
Q ss_pred HHHhccCChhHHHHHHHHHHHcCC
Q 007871 315 SACAQVGALDLGKWIHVFMKRSRI 338 (586)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~ 338 (586)
...+..|+.+.+..+++.+.+.|.
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC
Confidence 334455555555555555555554
No 346
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.05 E-value=75 Score=24.58 Aligned_cols=47 Identities=11% Similarity=-0.024 Sum_probs=0.0
Q ss_pred chhHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCC
Q 007871 12 KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTL 60 (586)
Q Consensus 12 ~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 60 (586)
+..++.+|...+.+-.|.++++.+.+.+...+..|....|. .+... |
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~-~L~e~-G 62 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQ-SLADA-G 62 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHH-HHHHT-T
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHC-C
Done!