BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007872
(586 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|D Chain D, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|F Chain F, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|H Chain H, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|J Chain J, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|L Chain L, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|N Chain N, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|P Chain P, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
Length = 589
Score = 601 bits (1549), Expect = e-172, Method: Compositional matrix adjust.
Identities = 298/584 (51%), Positives = 405/584 (69%), Gaps = 13/584 (2%)
Query: 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDE 60
MPTVSV RD LF ALG++YT EEF++LCF FG+ELD++T+EK II KE+ + +D
Sbjct: 1 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDV 60
Query: 61 EVIYKIEVPANRYDLLCLEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQ-MHVKPETSSI 119
V+YKI+VPANRYDLLCLEG+ + L+VF ++ + P Y V D +Q + + ET+ I
Sbjct: 61 -VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVY--KRVMPDGKIQKLIITEETAKI 117
Query: 120 RPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALP 179
RP+ V AVLR+I F + Y+SFI+LQ+KLHQNICR+R LVAIGTHDLDTL GPFTY A
Sbjct: 118 RPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKR 177
Query: 180 PSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPII 239
PS I F PL +T+++TA ELM YK+D LK YLHIIEN PLYPV+YD N VLS+PPII
Sbjct: 178 PSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPII 237
Query: 240 NGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSY 299
NG HS IT+ T+N+FIECT TD TKAKIVL+ +VT+FSEYC+ ++ VE EVV+ +G+S+
Sbjct: 238 NGDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSH 297
Query: 300 VYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPT 359
+P+L+ V IN +G+ E + LL RM L +E GN I + +PPT
Sbjct: 298 TFPELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGN---QIEIEIPPT 354
Query: 360 RSDVLHPCDVMEDVAIAYGYNNIPKRKPAS---VKPLALNEFSDLMRLEIAMNGFTEVLT 416
R+D++H CD++ED AIAYGYNNI P + LN+ ++L+R ++A GFTE LT
Sbjct: 355 RADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALT 414
Query: 417 WILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKI 475
+ LCS ++I+ L + AV + NP+T++F+V RTTL+PG+LKTI N+ P P+K+
Sbjct: 415 FALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKL 474
Query: 476 YEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTG 535
+E+ D+V+ D DVGA R L A+Y N GFE+IH L+DRIM+++ P P D G
Sbjct: 475 FEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVP--PGEDKGG 532
Query: 536 YYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVMSSFEQSL 579
Y I+ S+ P F PGR A I +G+ VG G++HP+V++ FE ++
Sbjct: 533 YVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTM 576
>pdb|2CXI|A Chain A, Crystal Structure Of An N-Terminal Fragment Of The
Phenylalanyl-Trna Synthetase Beta-Subunit From
Pyrococcus Horikoshii
pdb|2CXI|B Chain B, Crystal Structure Of An N-Terminal Fragment Of The
Phenylalanyl-Trna Synthetase Beta-Subunit From
Pyrococcus Horikoshii
pdb|2CXI|C Chain C, Crystal Structure Of An N-Terminal Fragment Of The
Phenylalanyl-Trna Synthetase Beta-Subunit From
Pyrococcus Horikoshii
Length = 348
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 127/381 (33%), Positives = 186/381 (48%), Gaps = 37/381 (9%)
Query: 2 PTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEE 61
P V + L +G+S++ EE+EDL ELDDV E +
Sbjct: 2 PKFDVSKSDLERLIGRSFSIEEWEDLVLYAKCELDDVWEENG-----------------K 44
Query: 62 VIYKIEVP-ANRYDLLCLEGIAQALR-VFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSI 119
V +K++ NR DL EG+A+ ++ ++ +PKY + K S + ++V + I
Sbjct: 45 VYFKLDSKDTNRPDLWSAEGVARQIKWALGIEKGLPKYEV----KKSNVTVYVDEKLKDI 100
Query: 120 RPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALP 179
RPY V A++ + DE S + I LQ+K+ RRR VAIG D D ++ P Y+A
Sbjct: 101 RPYGVYAIVEGLRLDEDSLSQXIQLQEKIALTFGRRRREVAIGIFDFDKIKPPIYYKAAE 160
Query: 180 PSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPII 239
+ F PL + T +E++E ++ K ++Y H+I++ YP+L D VLS PPII
Sbjct: 161 KTE-KFAPLGYKEEXTLEEILEKHE---KGREYGHLIKDKQFYPLLIDSEGNVLSXPPII 216
Query: 240 NGAHSA-ITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRS 298
N + +T TKNVFI+ T L K + LN VT +E R ++ V VVY D
Sbjct: 217 NSEFTGRVTTDTKNVFIDVTGWKLEKVXLALNVXVTALAE---RGGKIRSVRVVYKDFEI 273
Query: 299 YVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPP 358
PDL+ EV L YI G+ L E+ LL + E S + P
Sbjct: 274 ET-PDLTPKEFEVELDYIRKLSGLELNDGEIKELLEKXXYEVEISRG-----RAKLKYPA 327
Query: 359 TRSDVLHPCDVMEDVAIAYGY 379
R D+ H D++EDV IAYGY
Sbjct: 328 FRDDIXHARDILEDVLIAYGY 348
>pdb|3PCO|B Chain B, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
pdb|3PCO|D Chain D, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
Length = 795
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/391 (22%), Positives = 171/391 (43%), Gaps = 41/391 (10%)
Query: 224 VLYDQNRTVLSLPPIINGAHSAITLKTKNVFIEC------TATDLTKAKIVLNTMVTIFS 277
V+ D N+ L++ I G HS + +T+NV +EC + T + + +
Sbjct: 303 VIADHNKA-LAMGGIFGGEHSGVNDETQNVLLECAFFSPLSITGRARRHGLHTDASHRYE 361
Query: 278 EYCKRKYQVEPVE------VVYADGRSYVYPDLS-------AYNMEVSLSYINHTIGVSL 324
Q + +E + G + D++ + + S ++ IG +
Sbjct: 362 RGVDPALQHKAMERATRLLIDICGGEAGPVIDITNEATLPKRATITLRRSKLDRLIGHHI 421
Query: 325 EAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPK 384
E+VT +L R+ G ++W + P R D+ D++E+VA YGYNNIP
Sbjct: 422 ADEQVTDILRRLGCEV---TEGKDEWQ--AVAPSWRFDMEIEEDLVEEVARVYGYNNIPD 476
Query: 385 RKPASVKPLALNEFSD--LMRLEIAMN--GFTEVLTWILCSSKEISTMLNRQTDESTAVV 440
+ + + +D L R++ +N G+ EV+T+ K + M++ + ++
Sbjct: 477 EPVQASLIMGTHREADLSLKRVKTLLNDKGYQEVITYSFVDPK-VQQMIHPGVE--ALLL 533
Query: 441 GNPRTSDFEVVRTTLMPGILKTIGHNKDHPK-PIKIYEVGDVVLLDEKKDVGASCRRRLA 499
+P + + +R +L G+L T+ +N++ + ++I+E G + D + +G LA
Sbjct: 534 PSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESGLRFVPDTQAPLGIRQDLMLA 593
Query: 500 ALYCGAN--SGFELIHCLVDRIMEVIGTPFVPVGDDTGYY----IQRSDEPEFLPGRQAS 553
+ CG + L VD ++ G V D TG + P PG+ A+
Sbjct: 594 GVICGNRYEEHWNLAKETVD-FYDLKGD-LESVLDLTGKLNEVEFRAEANPALHPGQSAA 651
Query: 554 ITHKGKHVGTFGIVHPEVMSSFEQSLKNISY 584
I KG+ +G G+VHPE+ + + + + +
Sbjct: 652 IYLKGERIGFVGVVHPELERKLDLNGRTLVF 682
>pdb|2RHQ|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 795
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/383 (21%), Positives = 158/383 (41%), Gaps = 66/383 (17%)
Query: 233 LSLPPIINGAHSAITLKTKNVFIECTATD-----LTKAKIVLNTMVT------IFSEY-- 279
++L ++ G S +T +T NV IE D T ++ L + + I +E+
Sbjct: 315 IALAGVMGGDFSEVTEQTTNVVIEGAIFDPVSIRHTSRRLNLRSEASSRFEKGIATEFVD 374
Query: 280 ------CKRKYQVEPVEVVY-----ADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEE 328
C ++ EV+ D S+V P ++++ +N TIG +L +E
Sbjct: 375 EAVDRACYLLQELASGEVLQDRVSSGDLGSFVTP------IDITAEKVNKTIGFNLSNDE 428
Query: 329 VTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPA 388
+ S+ QL E + G + V VP R D+ D++E+VA YGY+ IP P
Sbjct: 429 IQSIFR--QLGFETTLKGET---LTVNVPSRRKDITIKEDLIEEVARIYGYDEIPSSLPV 483
Query: 389 SVKPLALNEFSD------LMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGN 442
+ E +D ++ + G + +T+ L S ++ T +
Sbjct: 484 -FGEVTSGELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQE--RPTISLLM 540
Query: 443 PRTSDFEVVRTTLMPGILKTIGHN-KDHPKPIKIYEVGDVVLLDEKKDV--------GAS 493
P + +R +L+P +++ +N K +++YE+G V + + ++ G
Sbjct: 541 PMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGEGELPDEVEYLSGIL 600
Query: 494 CRRRLAALYCGANS--GFELIHCLVDRIMEVIGTPF-VPVGDDTGYYIQRSDEPEFLPGR 550
+ + G F + +VDR+ E + F G G + PGR
Sbjct: 601 TGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKLNLEFSYKAGKIEGLH----------PGR 650
Query: 551 QASITHKGKHVGTFGIVHPEVMS 573
A ++ +G+ +G G +HP+V +
Sbjct: 651 TAIVSLEGQDIGFIGELHPQVAA 673
>pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|D Chain D, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 800
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 84/383 (21%), Positives = 156/383 (40%), Gaps = 66/383 (17%)
Query: 233 LSLPPIINGAHSAITLKTKNVFIECTATD-----LTKAKIVLNTMVT------IFSEY-- 279
++L ++ G S +T +T NV IE D T ++ L + + I +E+
Sbjct: 319 IALAGVMGGDFSEVTEQTTNVVIEGAIFDPVSIRHTSRRLNLRSEASSRFEKGIATEFVD 378
Query: 280 ------CKRKYQVEPVEVVY-----ADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEE 328
C ++ EV+ D S+V P ++++ +N TIG +L +E
Sbjct: 379 EAVDRACYLLQELASGEVLQDRVSSGDLGSFVTP------IDITAEKVNKTIGFNLSNDE 432
Query: 329 VTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPA 388
+ S+ QL E + G + V VP R D+ D++E+VA YGY+ IP P
Sbjct: 433 IQSIFR--QLGFETTLKGET---LTVNVPSRRKDITIKEDLIEEVARIYGYDEIPSSLPV 487
Query: 389 SVKPLALNEFSD------LMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGN 442
+ E +D ++ + G + +T+ L S ++ T +
Sbjct: 488 -FGEVTSGELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQE--RPTISLLM 544
Query: 443 PRTSDFEVVRTTLMPGILKTIGHN-KDHPKPIKIYEVGDVVLLDEKKDV--------GAS 493
P + +R +L+P +++ +N K +++YE+G V + + ++ G
Sbjct: 545 PMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGEGELPDEVEYLSGIL 604
Query: 494 CRRRLAALYCGANS--GFELIHCLVDRIMEVIGTPF-VPVGDDTGYYIQRSDEPEFLPGR 550
+ + G F + +VDR+ E + F G G + PGR
Sbjct: 605 TGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKLNLEFSYKAGKIEGLH----------PGR 654
Query: 551 QASITHKGKHVGTFGIVHPEVMS 573
A ++ G +G G +HP+V +
Sbjct: 655 TAIVSLGGAGIGFIGELHPQVAA 677
>pdb|1PYS|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
pdb|1B7Y|B Chain B, Phenylalanyl Trna Synthetase Complexed With
Phenylalaninyl-Adenylate
pdb|1EIY|B Chain B, The Crystal Structure Of Phenylalanyl-Trna Synthetase From
Thermus Thermophilus Complexed With Cognate Trnaphe
pdb|1B70|B Chain B, Phenylalanyl Trna Synthetase Complexed With Phenylalanine
pdb|1JJC|B Chain B, Crystal Structure At 2.6a Resolution Of Phenylalanyl-trna
Synthetase Complexed With Phenylalanyl-adenylate In The
Presence Of Manganese
pdb|2AKW|B Chain B, Crystal Structure Of T.thermophilus Phenylalanyl-trna
Synthetase Complexed With P-cl-phenylalanine
pdb|2ALY|B Chain B, Crystal Structure Of T.Thermophilus Phenylalanyl-Trna
Synthetase Complexed With
5'-O-[n-(L-Tyrosyl)sulphamoyl]adenosine
pdb|2AMC|B Chain B, Crystal Structure Of Phenylalanyl-Trna Synthetase
Complexed With L- Tyrosine
pdb|3HFZ|B Chain B, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With M-Tyrosine
pdb|3TEH|B Chain B, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With L-Dopa
Length = 785
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 110/281 (39%), Gaps = 45/281 (16%)
Query: 315 YINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVA 374
Y N +G S E ++L R+ E V P R D+ D++E+VA
Sbjct: 410 YANRLLGTSYPEAEQIAILKRLGCRVEGEGP-----TYRVTPPSHRLDLRLEEDLVEEVA 464
Query: 375 IAYGYNNIPKRKPASVKPLALNE-----FSDLMRLEIAMNG--FTEVLTWILCSSKEIST 427
GY IP PA P N + RL ++G F EV T+ ++
Sbjct: 465 RIQGYETIPLALPAFF-PAPDNRGVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARR 523
Query: 428 MLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK--IYEVGDVVLLD 485
+ D ++ NP + +RT L PG+++ + N D +P + ++EVG V
Sbjct: 524 F---RLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRV--FR 578
Query: 486 EKKDVGASCRRRLAALYCGAN----------SGFELIHCLVDRIMEVIGTPFVPVGDDTG 535
E+++ LA L G SG+ L+ ++ + +G F
Sbjct: 579 EREET------HLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARLGLAF-------- 624
Query: 536 YYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVMSSFE 576
++ P PG + +G+ VG G +HPE+ E
Sbjct: 625 -RVEAQAFPFLHPGVSGRVLVEGEEVGFLGALHPEIAQELE 664
>pdb|2IY5|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
Complexed With Trna And A Phenylalanyl-Adenylate Analog
Length = 785
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 67/281 (23%), Positives = 110/281 (39%), Gaps = 45/281 (16%)
Query: 315 YINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVA 374
Y N +G S E ++L R+ E V P R D+ D++E+VA
Sbjct: 410 YANRLLGTSYPEAEQIAILKRLGCRVEGEGP-----TYRVTPPSHRLDLRLEEDLVEEVA 464
Query: 375 IAYGYNNIPKRKPASVKPLALNE-----FSDLMRLEIAMNG--FTEVLTWILCSSKEIST 427
GY IP PA P N + RL ++G F EV T+ ++
Sbjct: 465 RIEGYETIPLALPAFF-PAPDNRAVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARR 523
Query: 428 MLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK--IYEVGDVVLLD 485
+ D ++ NP + +RT L PG+++ + N D +P + ++EVG V
Sbjct: 524 F---RLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRV--FR 578
Query: 486 EKKDVGASCRRRLAALYCGAN----------SGFELIHCLVDRIMEVIGTPFVPVGDDTG 535
E+++ LA L G SG+ L+ ++ + +G F
Sbjct: 579 EREET------HLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARLGLAF-------- 624
Query: 536 YYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVMSSFE 576
++ P PG + +G+ VG G +HPE+ E
Sbjct: 625 -RVEAEAFPFLHPGVSGRVLVEGEEVGFLGALHPEIAQELE 664
>pdb|3ICA|A Chain A, The Crystal Structure Of The Beta Subunit Of A
Phenylalanyl-Trna Synthetase From Porphyromonas
Gingivalis W83
pdb|3ICA|B Chain B, The Crystal Structure Of The Beta Subunit Of A
Phenylalanyl-Trna Synthetase From Porphyromonas
Gingivalis W83
Length = 213
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 67/178 (37%), Gaps = 12/178 (6%)
Query: 410 GFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHN-KD 468
GF E+L L + L E + NP + + R TL+ G L+T+ HN +
Sbjct: 21 GFNEILNNSLTAGSYYEG-LKSHPREXAVELXNPLSQELNCXRQTLLFGGLETLSHNLRR 79
Query: 469 HPKPIKIYEVGDVVLL------DEKKDVGASCRRRLAALYCGANSGFELIH----CLVDR 518
+ ++E G DE + RL CG H V
Sbjct: 80 KHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFE 139
Query: 519 IMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVMSSFE 576
+ V+ VG +TG Y ++ + + T GK +GTFG V E++ FE
Sbjct: 140 LKAVVEQVLCRVGIETGAYTLKTADNDLYASAXEVKTRSGKLLGTFGTVSTELIKRFE 197
>pdb|3IG2|A Chain A, The Crystal Structure Of A Putative Phenylalanyl-Trna
Synthetase (Phers) Beta Chain Domain From Bacteroides
Fragilis To 2.1a
pdb|3IG2|B Chain B, The Crystal Structure Of A Putative Phenylalanyl-Trna
Synthetase (Phers) Beta Chain Domain From Bacteroides
Fragilis To 2.1a
pdb|3IG2|C Chain C, The Crystal Structure Of A Putative Phenylalanyl-Trna
Synthetase (Phers) Beta Chain Domain From Bacteroides
Fragilis To 2.1a
pdb|3IG2|D Chain D, The Crystal Structure Of A Putative Phenylalanyl-Trna
Synthetase (Phers) Beta Chain Domain From Bacteroides
Fragilis To 2.1a
Length = 213
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTL 455
N+ +L+ ++ GF E+L L + + + + ++ NP ++D R TL
Sbjct: 7 NKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVXLL-NPLSADLNCXRQTL 65
Query: 456 MPGILKTIGHNKDHPKP-IKIYEVGDVVLLDEKK 488
+ G L++I HN + +K +E G+ D +K
Sbjct: 66 LFGGLESIAHNANRKNADLKFFEFGNCYHFDAEK 99
>pdb|2R6R|1 Chain 1, Aquifex Aeolicus Ftsz
pdb|2R75|1 Chain 1, Aquifex Aeolicus Ftsz With 8-Morpholino-Gtp
Length = 338
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 423 KEISTMLNRQTDESTAVVGNPRT--SDFEVVRTTLMPGILKTIGHNK---DHPKPIKIYE 477
KE+ ++L++ T++V P DF VRTTL G L IG + D I + +
Sbjct: 180 KEVDSVLSKAVRGITSIVVTPAVINVDFADVRTTLEEGGLSIIGMGEGRGDEKADIAVEK 239
Query: 478 VGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRI 519
LL+ GA RR L ++ + ++++ +++RI
Sbjct: 240 AVTSPLLEGNTIEGA--RRLLVTIWTSEDIPYDIVDEVMERI 279
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,451,150
Number of Sequences: 62578
Number of extensions: 740496
Number of successful extensions: 1772
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1744
Number of HSP's gapped (non-prelim): 21
length of query: 586
length of database: 14,973,337
effective HSP length: 104
effective length of query: 482
effective length of database: 8,465,225
effective search space: 4080238450
effective search space used: 4080238450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)