Query 007872
Match_columns 586
No_of_seqs 237 out of 1605
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 16:28:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007872.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007872hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02265 probable phenylalanyl 100.0 4E-136 8E-141 1141.7 61.0 581 1-584 1-589 (597)
2 KOG2472 Phenylalanyl-tRNA synt 100.0 2E-127 4E-132 992.4 34.2 564 1-583 1-569 (578)
3 TIGR00471 pheT_arch phenylalan 100.0 1E-115 3E-120 970.5 57.2 538 1-584 1-543 (551)
4 PRK09616 pheT phenylalanyl-tRN 100.0 2E-112 4E-117 946.4 57.9 536 1-584 1-541 (552)
5 CHL00192 syfB phenylalanyl-tRN 100.0 6.2E-97 1E-101 839.7 45.7 511 6-583 3-586 (704)
6 PRK00629 pheT phenylalanyl-tRN 100.0 7.4E-91 1.6E-95 802.1 46.0 466 60-584 153-676 (791)
7 TIGR00472 pheT_bact phenylalan 100.0 1.2E-90 2.7E-95 801.6 46.0 481 60-584 155-684 (798)
8 COG0072 PheT Phenylalanyl-tRNA 100.0 1.3E-86 2.8E-91 747.7 37.2 479 60-584 12-539 (650)
9 cd00769 PheRS_beta_core Phenyl 100.0 1.3E-37 2.8E-42 304.1 19.4 176 396-584 3-191 (198)
10 cd00496 PheRS_alpha_core Pheny 100.0 1.1E-32 2.3E-37 273.2 19.6 178 393-584 1-192 (218)
11 TIGR02367 PylS pyrrolysyl-tRNA 100.0 3.2E-30 6.9E-35 271.2 19.2 195 372-584 208-419 (453)
12 TIGR00468 pheS phenylalanyl-tR 100.0 3.5E-29 7.6E-34 258.1 21.2 184 391-584 70-261 (294)
13 PF01409 tRNA-synt_2d: tRNA sy 100.0 2.6E-28 5.6E-33 244.8 16.6 185 391-584 15-216 (247)
14 PRK06253 O-phosphoseryl-tRNA s 99.9 3.6E-24 7.7E-29 229.0 17.8 180 391-584 45-321 (529)
15 PRK09537 pylS pyrolysyl-tRNA s 99.9 2.4E-23 5.3E-28 220.3 18.2 176 391-584 202-383 (417)
16 cd00768 class_II_aaRS-like_cor 99.9 1.5E-22 3.3E-27 198.0 15.6 171 396-578 3-188 (211)
17 TIGR00470 sepS O-phosphoseryl- 99.9 8.8E-22 1.9E-26 206.9 17.5 185 391-584 45-320 (533)
18 PRK04172 pheS phenylalanyl-tRN 99.9 1.2E-20 2.5E-25 208.0 19.9 184 391-584 231-457 (489)
19 PF03483 B3_4: B3/4 domain; I 99.9 7.7E-22 1.7E-26 188.7 9.1 135 119-281 1-174 (174)
20 PRK00488 pheS phenylalanyl-tRN 99.8 7.5E-20 1.6E-24 189.1 21.1 176 391-581 106-302 (339)
21 PF03484 B5: tRNA synthetase B 99.8 1.5E-20 3.2E-25 152.6 7.5 70 306-379 1-70 (70)
22 smart00874 B5 tRNA synthetase 99.8 2.6E-19 5.5E-24 145.8 8.5 70 307-379 2-71 (71)
23 smart00873 B3_4 B3/4 domain. T 99.6 2.8E-15 6.1E-20 143.1 10.4 143 120-280 1-173 (174)
24 PLN02788 phenylalanine-tRNA sy 99.6 5E-14 1.1E-18 149.3 20.5 187 379-584 47-267 (402)
25 COG0016 PheS Phenylalanyl-tRNA 99.6 5.5E-14 1.2E-18 144.9 19.5 202 371-582 85-301 (335)
26 PLN02853 Probable phenylalanyl 99.6 6.2E-14 1.3E-18 151.0 20.0 186 391-584 219-452 (492)
27 PTZ00326 phenylalanyl-tRNA syn 99.6 1.4E-13 3E-18 149.0 19.8 186 391-584 227-467 (494)
28 COG0072 PheT Phenylalanyl-tRNA 99.4 3.2E-14 6.9E-19 161.5 -1.6 216 1-255 1-220 (650)
29 TIGR00469 pheS_mito phenylalan 99.1 2.6E-09 5.7E-14 114.5 17.7 186 391-581 40-312 (460)
30 COG2024 Phenylalanyl-tRNA synt 99.0 5.4E-10 1.2E-14 114.3 8.0 185 391-584 45-328 (536)
31 COG3382 Solo B3/4 domain (OB-f 98.7 1.5E-07 3.3E-12 91.9 11.3 120 139-282 82-218 (229)
32 KOG2784 Phenylalanyl-tRNA synt 98.6 2.7E-07 5.9E-12 94.5 10.7 185 387-583 206-440 (483)
33 smart00874 B5 tRNA synthetase 98.5 4.9E-07 1.1E-11 73.4 7.6 70 1-90 1-70 (71)
34 PF03484 B5: tRNA synthetase B 97.8 6.3E-05 1.4E-09 60.9 7.1 67 3-90 3-69 (70)
35 PF00587 tRNA-synt_2b: tRNA sy 97.7 0.00018 3.9E-09 68.7 9.9 130 396-526 3-145 (173)
36 PRK00037 hisS histidyl-tRNA sy 97.6 0.00037 8E-09 75.8 12.0 133 391-526 17-154 (412)
37 cd00773 HisRS-like_core Class 97.6 0.0011 2.5E-08 67.5 14.2 130 395-526 5-138 (261)
38 TIGR00442 hisS histidyl-tRNA s 97.4 0.0025 5.4E-08 69.0 14.3 135 391-526 13-153 (397)
39 PRK12421 ATP phosphoribosyltra 97.4 0.0027 6E-08 68.7 14.2 131 394-526 23-157 (392)
40 PF13393 tRNA-synt_His: Histid 97.3 0.0038 8.1E-08 65.2 13.8 129 395-526 13-145 (311)
41 cd00670 Gly_His_Pro_Ser_Thr_tR 97.3 0.0027 5.9E-08 63.2 11.8 131 395-526 5-149 (235)
42 CHL00201 syh histidine-tRNA sy 97.1 0.0079 1.7E-07 66.0 14.2 131 395-526 21-158 (430)
43 PRK12292 hisZ ATP phosphoribos 97.0 0.0095 2.1E-07 64.5 13.5 131 395-526 20-154 (391)
44 PLN02530 histidine-tRNA ligase 96.9 0.007 1.5E-07 67.4 12.2 129 394-526 86-220 (487)
45 TIGR00443 hisZ_biosyn_reg ATP 96.9 0.015 3.2E-07 61.1 13.2 128 395-526 11-143 (314)
46 PRK12420 histidyl-tRNA synthet 96.8 0.014 3E-07 63.9 13.0 131 394-526 20-155 (423)
47 PRK12293 hisZ ATP phosphoribos 96.7 0.015 3.3E-07 60.1 11.5 120 394-526 21-142 (281)
48 cd00779 ProRS_core_prok Prolyl 96.7 0.028 6.2E-07 57.2 13.3 133 394-527 33-176 (255)
49 PRK12295 hisZ ATP phosphoribos 96.5 0.053 1.1E-06 58.3 14.6 127 394-526 6-136 (373)
50 cd00771 ThrRS_core Threonyl-tR 96.4 0.075 1.6E-06 55.4 14.7 131 394-527 32-174 (298)
51 PRK09194 prolyl-tRNA synthetas 96.3 0.085 1.8E-06 60.0 15.4 132 394-527 49-192 (565)
52 cd00772 ProRS_core Prolyl-tRNA 96.2 0.11 2.4E-06 53.1 14.5 134 393-527 33-183 (264)
53 TIGR00409 proS_fam_II prolyl-t 96.1 0.067 1.5E-06 60.7 13.4 130 394-527 49-192 (568)
54 PRK12305 thrS threonyl-tRNA sy 96.1 0.039 8.4E-07 62.8 11.7 132 393-526 207-350 (575)
55 cd00770 SerRS_core Seryl-tRNA 96.1 0.038 8.2E-07 57.6 10.3 130 394-527 54-197 (297)
56 PRK00413 thrS threonyl-tRNA sy 96.0 0.054 1.2E-06 62.4 12.4 131 394-526 272-414 (638)
57 PLN02972 Histidyl-tRNA synthet 96.0 0.097 2.1E-06 60.6 14.1 126 395-526 344-474 (763)
58 TIGR00418 thrS threonyl-tRNA s 95.9 0.086 1.9E-06 59.9 12.9 132 394-527 202-345 (563)
59 COG0124 HisS Histidyl-tRNA syn 95.8 0.1 2.3E-06 56.8 12.5 132 395-527 21-158 (429)
60 PLN02908 threonyl-tRNA synthet 95.8 0.061 1.3E-06 62.5 11.4 185 314-526 263-464 (686)
61 cd00778 ProRS_core_arch_euk Pr 95.7 0.11 2.3E-06 53.2 11.5 156 370-526 6-182 (261)
62 PRK12444 threonyl-tRNA synthet 95.4 0.11 2.3E-06 60.1 11.6 184 315-526 217-417 (639)
63 PRK14799 thrS threonyl-tRNA sy 95.4 0.079 1.7E-06 59.7 10.1 145 315-488 110-265 (545)
64 PRK12325 prolyl-tRNA synthetas 95.4 0.069 1.5E-06 58.8 9.5 134 392-527 47-192 (439)
65 cd00669 Asp_Lys_Asn_RS_core As 95.1 0.26 5.7E-06 50.6 12.0 114 395-523 4-118 (269)
66 PRK00960 seryl-tRNA synthetase 95.0 0.15 3.3E-06 56.8 10.7 146 396-550 227-412 (517)
67 TIGR00471 pheT_arch phenylalan 94.9 0.069 1.5E-06 60.4 8.0 70 2-93 278-347 (551)
68 PRK09616 pheT phenylalanyl-tRN 94.4 0.11 2.3E-06 58.9 7.8 71 2-94 275-345 (552)
69 PLN02678 seryl-tRNA synthetase 94.4 0.35 7.5E-06 53.2 11.4 128 394-527 176-323 (448)
70 PRK00629 pheT phenylalanyl-tRN 94.3 0.1 2.2E-06 61.7 7.8 72 2-94 401-472 (791)
71 TIGR00415 serS_MJ seryl-tRNA s 94.2 0.62 1.3E-05 51.6 12.9 145 398-551 229-413 (520)
72 PLN02265 probable phenylalanyl 93.7 0.14 3E-06 58.5 7.1 72 3-93 311-382 (597)
73 cd00774 GlyRS-like_core Glycyl 93.5 0.26 5.7E-06 50.1 8.1 126 392-527 32-169 (254)
74 PF00152 tRNA-synt_2: tRNA syn 93.1 0.78 1.7E-05 48.5 11.1 111 396-521 26-141 (335)
75 TIGR00414 serS seryl-tRNA synt 93.0 0.94 2E-05 49.6 11.8 129 395-527 176-318 (418)
76 TIGR00472 pheT_bact phenylalan 93.0 0.22 4.8E-06 58.9 7.5 70 2-93 406-475 (798)
77 PRK12294 hisZ ATP phosphoribos 92.5 1.1 2.4E-05 46.0 10.9 119 394-524 9-130 (272)
78 CHL00192 syfB phenylalanyl-tRN 92.4 0.34 7.4E-06 56.5 7.9 73 2-94 303-384 (704)
79 PRK09350 poxB regulator PoxA; 92.3 0.52 1.1E-05 49.3 8.4 111 395-520 8-124 (306)
80 PRK06462 asparagine synthetase 92.0 0.98 2.1E-05 47.9 10.2 116 396-522 34-153 (335)
81 PLN02837 threonine-tRNA ligase 91.9 0.95 2.1E-05 52.0 10.6 136 391-527 246-392 (614)
82 PRK05431 seryl-tRNA synthetase 91.9 1.5 3.2E-05 48.1 11.7 129 395-527 173-316 (425)
83 PRK08661 prolyl-tRNA synthetas 91.9 2 4.3E-05 47.9 12.8 134 392-526 44-193 (477)
84 cd00777 AspRS_core Asp tRNA sy 91.6 1.8 3.9E-05 44.8 11.3 112 395-521 4-116 (280)
85 PTZ00417 lysine-tRNA ligase; P 91.3 1.1 2.4E-05 50.9 10.0 112 396-523 257-370 (585)
86 cd00775 LysRS_core Lys_tRNA sy 90.6 1.9 4.1E-05 45.7 10.5 110 396-522 12-124 (329)
87 smart00873 B3_4 B3/4 domain. T 90.0 0.16 3.5E-06 48.0 1.8 80 159-254 50-142 (174)
88 PRK03991 threonyl-tRNA synthet 89.7 1.3 2.8E-05 50.8 9.0 131 394-526 229-372 (613)
89 PRK00484 lysS lysyl-tRNA synth 89.5 2.4 5.1E-05 47.4 10.7 110 396-523 176-289 (491)
90 TIGR00499 lysS_bact lysyl-tRNA 89.5 1.5 3.2E-05 49.1 8.9 110 396-523 176-289 (496)
91 TIGR00462 genX lysyl-tRNA synt 89.1 1.1 2.5E-05 46.8 7.4 111 395-521 4-120 (304)
92 PRK12445 lysyl-tRNA synthetase 88.8 2.2 4.7E-05 47.9 9.7 110 396-523 188-301 (505)
93 TIGR00408 proS_fam_I prolyl-tR 88.8 1.5 3.3E-05 48.8 8.4 134 394-527 40-189 (472)
94 PTZ00385 lysyl-tRNA synthetase 88.8 3.2 6.9E-05 47.8 11.1 112 396-523 237-350 (659)
95 PF11734 TilS_C: TilS substrat 88.6 1.6 3.5E-05 35.5 6.5 69 176-255 4-72 (74)
96 PRK03932 asnC asparaginyl-tRNA 87.7 4.2 9.2E-05 44.9 11.1 112 395-522 136-256 (450)
97 PLN02502 lysyl-tRNA synthetase 86.2 3.3 7.2E-05 46.9 9.3 112 396-523 233-346 (553)
98 PRK12820 bifunctional aspartyl 85.8 6.2 0.00014 45.9 11.3 112 395-521 159-271 (706)
99 cd00776 AsxRS_core Asx tRNA sy 85.1 5.3 0.00011 42.1 9.7 110 395-521 27-138 (322)
100 TIGR00459 aspS_bact aspartyl-t 83.5 11 0.00024 42.9 11.9 112 395-521 141-253 (583)
101 PLN02850 aspartate-tRNA ligase 83.1 5.2 0.00011 45.2 9.1 108 396-521 229-340 (530)
102 PTZ00401 aspartyl-tRNA synthet 82.5 6.6 0.00014 44.5 9.6 110 396-521 217-328 (550)
103 PRK04173 glycyl-tRNA synthetas 81.5 14 0.00031 40.8 11.7 81 447-527 158-248 (456)
104 PLN02320 seryl-tRNA synthetase 81.4 7.9 0.00017 43.2 9.5 127 396-527 237-379 (502)
105 TIGR00458 aspS_arch aspartyl-t 81.3 12 0.00025 41.2 10.8 107 396-521 137-247 (428)
106 KOG1936 Histidyl-tRNA syntheta 81.0 12 0.00026 40.5 10.2 156 364-526 28-209 (518)
107 PRK05159 aspC aspartyl-tRNA sy 80.8 12 0.00025 41.3 10.7 108 396-520 140-250 (437)
108 COG1190 LysU Lysyl-tRNA synthe 79.9 2.4 5.2E-05 46.7 4.8 114 396-524 184-298 (502)
109 PRK00476 aspS aspartyl-tRNA sy 79.0 18 0.0004 41.4 11.7 112 395-521 144-256 (588)
110 TIGR00457 asnS asparaginyl-tRN 78.9 13 0.00027 41.3 10.1 110 396-521 140-258 (453)
111 PRK02983 lysS lysyl-tRNA synth 77.9 8.1 0.00018 47.4 8.9 110 397-523 775-887 (1094)
112 PLN02903 aminoacyl-tRNA ligase 76.5 22 0.00048 41.1 11.4 112 395-521 206-319 (652)
113 COG0441 ThrS Threonyl-tRNA syn 66.1 17 0.00037 41.5 7.4 95 391-487 219-316 (589)
114 KOG0556 Aspartyl-tRNA syntheta 64.1 19 0.00041 38.8 6.8 77 396-487 232-309 (533)
115 COG3705 HisZ ATP phosphoribosy 63.8 27 0.0006 37.7 8.1 128 394-526 19-151 (390)
116 PF09840 DUF2067: Uncharacteri 63.7 58 0.0012 31.7 9.6 101 247-378 30-130 (190)
117 PLN02221 asparaginyl-tRNA synt 62.9 59 0.0013 37.2 10.9 28 396-423 175-202 (572)
118 PF13592 HTH_33: Winged helix- 61.3 7.5 0.00016 30.2 2.5 28 314-341 12-39 (60)
119 PTZ00425 asparagine-tRNA ligas 54.4 1.3E+02 0.0027 34.6 11.6 29 395-423 218-246 (586)
120 PLN02603 asparaginyl-tRNA synt 54.4 1.1E+02 0.0024 34.9 11.2 28 395-422 229-256 (565)
121 COG0172 SerS Seryl-tRNA synthe 52.3 1.4E+02 0.0031 32.7 11.2 125 394-527 172-319 (429)
122 KOG2472 Phenylalanyl-tRNA synt 49.5 28 0.0006 38.6 5.2 65 5-90 310-374 (578)
123 COG0017 AsnS Aspartyl/asparagi 45.2 78 0.0017 34.8 7.9 76 395-487 137-214 (435)
124 PLN02532 asparagine-tRNA synth 44.2 1.4E+02 0.0031 34.5 10.1 29 395-423 238-266 (633)
125 TIGR00268 conserved hypothetic 41.6 44 0.00095 33.8 5.1 90 322-414 142-242 (252)
126 COG0442 ProS Prolyl-tRNA synth 36.4 4.6E+02 0.0099 29.6 12.3 169 394-578 49-240 (500)
127 KOG2509 Seryl-tRNA synthetase 30.5 2.7E+02 0.0057 30.6 8.9 155 370-527 154-332 (455)
128 KOG2324 Prolyl-tRNA synthetase 30.2 2.5E+02 0.0054 30.1 8.4 121 391-528 51-199 (457)
129 COG2269 Truncated, possibly in 28.8 1.5E+02 0.0032 30.9 6.3 84 394-486 18-103 (322)
130 PRK10660 tilS tRNA(Ile)-lysidi 22.8 2.2E+02 0.0048 31.4 7.0 78 164-253 350-427 (436)
No 1
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=100.00 E-value=3.6e-136 Score=1141.68 Aligned_cols=581 Identities=77% Similarity=1.228 Sum_probs=520.8
Q ss_pred CCeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhhHHHhhhccccc---cCCCCCCceEEEEecCCCcccccC
Q 007872 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDE---EGDENDEEVIYKIEVPANRYDLLC 77 (586)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~---~~~~~~~d~i~~ieit~NR~Dlls 77 (586)
||||+|++++|++++|+++|++||+++||+||+|+|++++|+++.++|+|.++ ++.++++|++++||+|||||||||
T Consensus 1 MP~i~~~~~~l~~~~g~~~~~~~~~~~~~~~g~e~d~~~~e~~~~~~~~~~~~~~~~~~~~~~d~i~eieitpNR~Dlls 80 (597)
T PLN02265 1 MPTVSVGRDRLFAALGRTYTQEEFDELCFEFGIELDDVTTEKAIIRKEKHLDEEEDGGADDDEEVIYKIDVPANRYDLLC 80 (597)
T ss_pred CCEEEEcHHHHHHHhCCCCCHHHHHHHHHHhCceeccccccccccccccccccccccccccCCceEEEEEeCCCcHHHhh
Confidence 99999999999999999999999999999999999999877777778777765 235668999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCceeccCCCCCCcceEEEeecCCCCCCeEEEEEEeccccCCCCccCHHHHHHHHHhcCCCCCc
Q 007872 78 LEGIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRT 157 (586)
Q Consensus 78 ~~GiARel~a~~g~~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~~s~~~lq~kL~~~~~r~r~ 157 (586)
++||||+|++++|....|.|.+.........++.|+.++.+.||||+|+++|||++++++|+||+|||+|||++++|+|+
T Consensus 81 ~~GiARel~a~~g~~~~p~~~~~~~~~~~~~~v~V~~~~~~~rp~~~~~vi~~v~~~~~~~~Sp~~lQerL~~~g~R~r~ 160 (597)
T PLN02265 81 LEGLARALRVFLGTEPIPTYRLAEISKGSILKMHVKPETSLIRPFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRT 160 (597)
T ss_pred HHHHHHHHHHHhCCCCCCccccccCCCCcceEEEEcccccccCceEEEEEEeCcccCccccCCHHHHHHHHHHhcCCcce
Confidence 99999999999996447767653221122345666556678999999999999999999999999999999999999988
Q ss_pred EEEeeehhhcccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCcceEEEeCCCCeeeecC
Q 007872 158 LVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPP 237 (586)
Q Consensus 158 ~VdIgn~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~VI~D~~~~~lslag 237 (586)
+|||||||+|+|++||.|+++++++++|+||+++++|+++||+++++++++|++|+|||++++.||||+|++|.|+||||
T Consensus 161 ~VdIgn~DldkI~g~i~yr~~~~~~~~f~~Ld~~~e~~~~eil~~~~~~~~L~~Y~~ii~~~~~~~vI~D~~~~vlslag 240 (597)
T PLN02265 161 LVAIGTHDLDTLQGPFTYEALPPEDINFVPLKQTKSFRADELMEFYKSDMKLKKFLHIIENSPVFPVIYDSNRTVLSLPP 240 (597)
T ss_pred EEEEeeccHHHcCCCeEEEEcCCCceEEEECCCCCccCHHHHhhhcccCcccccccccccCCCCceEEEeCCCCEEEeCC
Confidence 99999999999999999999999878999999999999999999999999999999999999999999999986799999
Q ss_pred cccCCcceeccCCceEEEEecccChhhHHHHHHHHHHHHHHhhcCCceeeeEEEEeeCCceeeecCCCceEEEeehhHHh
Q 007872 238 IINGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYIN 317 (586)
Q Consensus 238 Iigg~~s~It~~T~nI~iE~a~~D~~~~~~~l~~~~~~~~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~ 317 (586)
||||++|+||++|||||||||++|++++..||++++++|+++|+++|+++++.+++.+|..+.+|.+.++.+.++.++|+
T Consensus 241 Iing~~S~It~~TknIfIE~a~~D~~~~~~al~~~~~ll~e~~~~~~~i~~v~v~~~~~~~~~~p~~~~~~i~~~~~~i~ 320 (597)
T PLN02265 241 IINGAHSAITLDTKNVFIECTATDLTKAKIVLNTMVTMFSEYCARKFEVEPVEVVYPDGKSTVYPDLSVRTMEVDLSYIN 320 (597)
T ss_pred eeCCCccEecCCCcEEEEEEeccCHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEccCCceEeccCCcCceEEeeHHHHH
Confidence 99999999999999999999999999999999999999999999888999988887656667789888899999999999
Q ss_pred hhcCCcCCHHHHHHHHHhcCCeEEEcC-CCCCcceEEEEcCCCCcccCCcchhHhHHHHhhCcCCCCCCCCCCC---CCC
Q 007872 318 HTIGVSLEAEEVTSLLNRMQLHAERSA-SGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPL 393 (586)
Q Consensus 318 ~~lG~~l~~~~i~~~L~~Lg~~~~~~~-~~~~~~~l~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~ 393 (586)
++||++|+.++|+++|++|||++...+ ++ +. |.|+||+||+||+|++||||||||+|||||||+++|... ..+
T Consensus 321 ~~lG~~l~~~ei~~iL~~l~~~~~~~~~~~-~~--~~V~vP~~R~DI~~~~DiiEEVar~yGydni~~~~P~~~~~g~~~ 397 (597)
T PLN02265 321 SSIGVSLDAEEVASLLNKMQLQAEQSSDDG-CT--IRVSVPPTRSDILHPCDVAEDVAIAYGYNNIPKRKPKSMTVGKQQ 397 (597)
T ss_pred HHhCCCCCHHHHHHHHHHCCCCeEecccCC-Cc--eEEEcCCccccccchhhhhhhhHheeccccCCccCCCcccCCCCC
Confidence 999999999999999999999996522 11 35 999999999999999999999999999999999988643 678
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP 472 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~ 472 (586)
+.+++.+++|+.|+++||+|++||+|+|+++++.+|+...++..+| |+||+|+|+++||+||+||||+++++|+|++.|
T Consensus 398 ~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~~~~p 477 (597)
T PLN02265 398 PLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPKP 477 (597)
T ss_pred HHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcCCccCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhhcCCCC
Confidence 8999999999999999999999999999988778776543222579 999999999999999999999999999999889
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceE
Q 007872 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQA 552 (586)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A 552 (586)
+|+||||+||.++.+.++++++.+++|++++|..++|+++||+|+++|..+|++.........|++++..++.|||||||
T Consensus 478 ~klFEiG~V~~~~~~~~~~~~e~~~la~~~~g~~~~f~~ikg~le~ll~~l~i~~~~~~~~~~~~~~~~~~~~f~pgr~A 557 (597)
T PLN02265 478 IKLFEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEVLGIPFVEIGDNNGYYVEPSNEPEYFPGRQA 557 (597)
T ss_pred eeEEEeEeEEecCCcccCCcchhhEEEEEEECCCCCHhhHHHHHHHHHHHcCCcccccccCceEEEeecCCccccCCceE
Confidence 99999999998875444666899999999999999999999999999999998510000000277788888999999999
Q ss_pred EEEECCEEEEEEEEeCHHHHHHCCCCcccccc
Q 007872 553 SITHKGKHVGTFGIVHPEVMSSFEQSLKNISY 584 (586)
Q Consensus 553 ~I~~~g~~iG~~GelhP~vl~~~~l~~pv~~~ 584 (586)
+|+++|+.||+||+|||+|+++|+|++||+++
T Consensus 558 ~I~~~g~~iG~iGelhP~vl~~f~l~~pv~~~ 589 (597)
T PLN02265 558 SIIYKGKHVGTFGIVHPEVLNNFDIPDPCSFL 589 (597)
T ss_pred EEEECCeEEEEEEEECHHHHHHCCCCCceEEE
Confidence 99999999999999999999999999998764
No 2
>KOG2472 consensus Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-127 Score=992.37 Aligned_cols=564 Identities=57% Similarity=0.972 Sum_probs=533.1
Q ss_pred CCeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhhHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHH
Q 007872 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEG 80 (586)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~G 80 (586)
||||+|.++.|++++|++||++||+++||.||+|+|+++.++++..++++...++. .++.+.+++++++||+|++|++|
T Consensus 1 MpTI~v~k~~l~~~LGk~yt~~ef~elcfeFgleldeit~e~a~~~ke~~~~~~~g-ane~~~ykidipANrydllC~eg 79 (578)
T KOG2472|consen 1 MPTISVKKDHLFRALGKSYTDREFDELCFEFGLELDEITTEKAFAMKEQGSLVEAG-SNEEVRYKIDIPANRYDLLCLEG 79 (578)
T ss_pred CCceEecHHHHHHHhccccchhhhhhhhhhhccccccchhHHHhhhhhhcchhhcc-CCcceeeehhcccccccccchHH
Confidence 99999999999999999999999999999999999999999999999988877655 77889999999999999999999
Q ss_pred HHHHHHHHcCCCCCCceeccCCCCCCcceEEEeecCCCCCCeEEEEEEeccccC-CCCccCHHHHHHHHHhcCCCCCcEE
Q 007872 81 IAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFD-EASYNSFIDLQDKLHQNICRRRTLV 159 (586)
Q Consensus 81 iARel~a~~g~~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~-~~~~~s~~~lq~kL~~~~~r~r~~V 159 (586)
++++++.|......|.|+..........++.|++++.++|||++|+|+|||+++ +.+|+|+++||+|||+++||+|.+|
T Consensus 80 l~qalrvf~~~~~~p~yk~~~~s~t~~~k~~v~~~t~qIRP~~v~aVir~v~l~~~dsy~sFIdlQdKLHqnicrnRtLv 159 (578)
T KOG2472|consen 80 LAQALRVFPRETEFPSYKLQDFSSTKRQKLIVKPETSQIRPFAVCAVIRNVSLDPPDSYKSFIDLQDKLHQNICRNRTLV 159 (578)
T ss_pred HHHHHHhccccCCCCcceeeccccccceEEEEcccccccchHHHHHHHhcCccCchhhhHhHHhHHHHHHHHHHhhcccc
Confidence 999999998888889998875433334689999999999999999999999999 7789999999999999999999999
Q ss_pred EeeehhhcccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCcceEEEeCCCCeeeecCcc
Q 007872 160 AIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPII 239 (586)
Q Consensus 160 dIgn~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~VI~D~~~~~lslagIi 239 (586)
+||+||||++.+||.|.+..|++|+|+||++++++++.+++++|..+.++++|+|||++++.||||.|++|.++|+||||
T Consensus 160 AiGTHDLDt~qgPf~Y~Al~peei~f~PLNqtre~~~~eL~~~y~~d~~l~rYlhII~~sPvypvi~Ds~~~V~SlPPIi 239 (578)
T KOG2472|consen 160 AIGTHDLDTIQGPFEYEALPPEEIKFKPLNQTREVTASELMSFYKRDMHLKRYLHIIENSPVYPVIYDSKGVVCSLPPII 239 (578)
T ss_pred ccccccchhccCCeeeeeeChhhcCcccchhhhccccccccccccCccchhhhehhhcCCCccceeeCCCCceEecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeccCCceEEEEecccChhhHHHHHHHHHHHHHHhhcCCceeeeEEEEeeCCceeeecCCCceEEEeehhHHhhh
Q 007872 240 NGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHT 319 (586)
Q Consensus 240 gg~~s~It~~T~nI~iE~a~~D~~~~~~~l~~~~~~~~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~~~ 319 (586)
||++|+||.+|+|||||+|++|..++..+++.++++|+++|..++++++|+|++++|....+|.+..+...++.++||..
T Consensus 240 Nsd~Skitl~TknIfievTaTd~~ka~ivl~~~v~lfS~~c~~~ftiepveIv~~~G~~~l~P~l~~r~~~~~~~~in~~ 319 (578)
T KOG2472|consen 240 NSDHSKITLNTKNIFIEVTATDFTKAKIVLNTIVTLFSQQCFLKFTIEPVEIVCGEGGSILYPQLANRSMTMSIQAINFA 319 (578)
T ss_pred CcccceeeeccceEEEEeeeccchhhhcccceeeehhhhhhccCccccceEEEcCCCcEEECccccCcceeeehhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999988888899999999999999999999
Q ss_pred cCCcCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCcchhHhHHHHhhCcCCCCCCCCCCC---CCChHH
Q 007872 320 IGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALN 396 (586)
Q Consensus 320 lG~~l~~~~i~~~L~~Lg~~~~~~~~~~~~~~l~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~~~~ 396 (586)
+|++++.++++.+|+||.++++..++ +. ++|.||+.|+||+|.|||+||+|++||||||+.++|.++ ++.|.+
T Consensus 320 ~g~~l~~~~~~~~l~RM~L~a~v~~~--~~--l~v~iPptraDIlHaCDI~ED~aIAyGyNNi~~~lP~~~~~~~~~plN 395 (578)
T KOG2472|consen 320 IGLNLTIEEQAYYLTRMYLKAKVIGN--GN--LEVKIPPTRADILHACDIVEDAAIAYGYNNIQMTLPASNTIAKPFPLN 395 (578)
T ss_pred hccCCCHHHHHHHHhhhheeeEecCC--Cc--eEEecCCchhhhhhhhhhhhHHHHHhccccccccCcchhcccCccchH
Confidence 99999999999999999999987654 35 999999999999999999999999999999999999875 899999
Q ss_pred HHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCCeeE
Q 007872 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKI 475 (586)
Q Consensus 397 ~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~~l 475 (586)
++.+.+|..++.+||+|++||+|||.++ + ..++..+| |.||+|.||+++|||||||||++++.|.+++.|+|+
T Consensus 396 kl~d~lR~e~a~ag~~E~l~~~LcS~de-----~-~~d~~~AV~l~NPkt~efqv~RtsLlPGllKTv~~N~~~~lP~kl 469 (578)
T KOG2472|consen 396 KLTDILRIEVAAAGFTEALTFTLCSRDE-----N-VIDGDKAVHLGNPKTLEFQVVRTSLLPGLLKTVASNRKMPLPIKL 469 (578)
T ss_pred HHHHHHHHHHHHhhhhhheeeeeecccc-----C-CcccccceEecCCCceeeeeehhhhchHHHHHHHhccCCCCceeE
Confidence 9999999999999999999999999997 2 33446789 999999999999999999999999999999999999
Q ss_pred EEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEE
Q 007872 476 YEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASIT 555 (586)
Q Consensus 476 FEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~ 555 (586)
|||++|+..|.+.+.|++|+||||++++|..++|+.++|+|+.+|+.-++.. .|+++..+.+ |+|||||.|+
T Consensus 470 FEisDvv~~D~~~e~ga~N~R~l~A~y~g~~~gfE~i~Glld~~l~~~~~~~-------~Y~i~~~~~~-yfpgr~A~v~ 541 (578)
T KOG2472|consen 470 FEISDVVFKDSSTEVGARNERHLAAVYCGKTSGFEIIHGLLDQLLNVPPIRD-------SYYIEADEDP-YFPGRCAKVI 541 (578)
T ss_pred EEeeeEEEecccccccccchheeeeeecCCCccHHHHHHHHHHHhcCCcccc-------ceEEecCcCC-cCCCcceEEE
Confidence 9999999999999999999999999999999999999999997776655542 3888887777 9999999999
Q ss_pred ECCEEEEEEEEeCHHHHHHCCCCccccc
Q 007872 556 HKGKHVGTFGIVHPEVMSSFEQSLKNIS 583 (586)
Q Consensus 556 ~~g~~iG~~GelhP~vl~~~~l~~pv~~ 583 (586)
+.|+.||.+|.+||+|+.+|++++|+-+
T Consensus 542 ~~g~~iG~~GvlhPev~~~F~l~~~~s~ 569 (578)
T KOG2472|consen 542 VEGKVIGKIGVLHPEVLTKFELTYPCSA 569 (578)
T ss_pred EcCceeeeecccCHHHHhhcCCCCccce
Confidence 9999999999999999999999999754
No 3
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=100.00 E-value=1.4e-115 Score=970.54 Aligned_cols=538 Identities=37% Similarity=0.620 Sum_probs=466.1
Q ss_pred CCeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhhHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHH
Q 007872 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEG 80 (586)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~G 80 (586)
||||++++++|++++ ...+.++|.+.|++.|+|+|+++++ ..++|||+|||||||||++|
T Consensus 1 Mp~i~~~~~~l~~~l-~~~~~~~l~~~l~~~~~eve~~~~~-------------------~~i~eieiTpNR~D~lS~~G 60 (551)
T TIGR00471 1 MPTVTVYKDDLEDLL-IGTDRDEILEELPMMGDEIEGFDEE-------------------SPEIKVEFNPNRPDLLSVEG 60 (551)
T ss_pred CCEEEEcHHHHHHHh-cCCCHHHHHHHhcccccccccccCC-------------------cceEEEEcCCCCchhhhHHH
Confidence 999999999999998 7778899999999999999876432 14799999999999999999
Q ss_pred HHHHHHHHcCC-CCCCceeccCCCCCCcceEEEeecCCCCCCeEEEEEEeccccCCCCccCHHHHHHHHHhcCCCCCcEE
Q 007872 81 IAQALRVFNKQ-QEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLV 159 (586)
Q Consensus 81 iARel~a~~g~-~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~~s~~~lq~kL~~~~~r~r~~V 159 (586)
|||||+|++|. ...|.+... .....+.|+..+.+.||||+|++++||++++++++||+|||+|||++++|++|.+
T Consensus 61 iARel~a~~~~~~~~p~~~~~----~~~~~v~v~~~~~~~cp~y~~~vi~gv~~~~~~~~Sp~wlq~rL~~~g~R~in~l 136 (551)
T TIGR00471 61 LARSLRGYLGIEKGLKSYDSK----KGDVKLTVDESVLQIRPFITGAVVKGIILNDKVLESLIELQEKLHWNIGRNRRKV 136 (551)
T ss_pred HHHHHHHHhCCCCCCcceecC----CCceEEEECCcccccCCeEEEEEEeCCccChhHHhhHHHHHHHHHHhhCccccee
Confidence 99999999996 455544311 1223444443223689999999999999998888899999999999999988889
Q ss_pred EeeehhhcccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCcceEEEeCCCCeeeecCcc
Q 007872 160 AIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPII 239 (586)
Q Consensus 160 dIgn~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~VI~D~~~~~lslagIi 239 (586)
+|+.||+|+|++|+.|++..+++++|+||+++++++.+++++ +|+++.+|++|+++.+.+|||+|++++|+||||||
T Consensus 137 ~ihafD~dki~~~i~vr~~a~~ge~f~~Ld~~~~L~~~~~~~---~~~~~~~y~~l~~~~~~~~vI~D~~~~~lslaGIm 213 (551)
T TIGR00471 137 AIGIHDLDKVEFPFHYKAVSPNGIKFVPLNSDQEMTPDEILE---EHPKGIRYAHIIEDSDKFPLILDSKDDVLSMPPII 213 (551)
T ss_pred eEEeccHHhCCCCeEEEEECCCCCEEEECCCCCccCHHHHHh---hCcccchhhhhhcCCCceeEEEeCCCCEEeeCCcc
Confidence 999999999999999997777778999999999999999888 89999999999999999999999966799999999
Q ss_pred cCCcceeccCCceEEEEecccChhhHHHHHHHHHHHHHHhhcCCceeeeEEEEeeCCceeeecCCCceEEEeehhHHhhh
Q 007872 240 NGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHT 319 (586)
Q Consensus 240 gg~~s~It~~T~nI~iE~a~~D~~~~~~~l~~~~~~~~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~~~ 319 (586)
||++|+|+++||||||||||+|+..+..|+++++++++++|++.. ....+... +....+|...+++|.++.++|+++
T Consensus 214 gg~~s~V~~~T~nIllE~Ag~D~~~~~~al~~a~~li~~~~~g~~--~~~~v~~~-~~~~~~p~~~~~~i~~~~~~i~~~ 290 (551)
T TIGR00471 214 NSELTKLTVNTRNLLIDVTGTDKTAVEITLNIACTMFADRGDGRI--TVVEVERP-DEHLGQPNLAPRFMEVSVEYINSL 290 (551)
T ss_pred CCCceEecCCCceEEEEEecCCHHHHHHHHHHHHHHHHHhCCCce--eEEEEEEC-CCcccCCCCccceEEecHHHHHHH
Confidence 999999999999999999999999999999999999999987543 33223221 112234556778999999999999
Q ss_pred cCCcCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCcchhHhHHHHhhCcCCCCCCCCCCC---CCChHH
Q 007872 320 IGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALN 396 (586)
Q Consensus 320 lG~~l~~~~i~~~L~~Lg~~~~~~~~~~~~~~l~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~~~~ 396 (586)
||++|+.++|.++|++|||++...+ +. |.|+||+||.||+|++||||||||+|||||||+++|... ..++.+
T Consensus 291 lG~~l~~~ei~~iL~~Lg~~v~~~~---~~--~~v~vP~~R~DI~~~~DliEEIaR~yGyd~I~~~~p~~~~~~~~~~~~ 365 (551)
T TIGR00471 291 LGLNLSADEIAHSLKKMRLDAVQSD---EK--LKVVIPAYRVDILHEVDIIEDVAIGYGYNNFPPELPLINTIGRLKPLN 365 (551)
T ss_pred hCCCCCHHHHHHHHHHhCCCeEecC---Cc--EEEEcCCCccccCchhHHHHHHHHHhCcccCCccCCCccccCCcChHH
Confidence 9999999999999999999996433 24 999999999999999999999999999999999887532 667788
Q ss_pred HHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCCeeE
Q 007872 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKI 475 (586)
Q Consensus 397 ~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~~l 475 (586)
++.+++|+.|+++||+|++||+|+|++++++.++... .+.| |.||+|+|+++||+||+||||+++++|+++..++++
T Consensus 366 ~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~~--~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~~~~~~~~l 443 (551)
T TIGR00471 366 KVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIED--NNDVKVANPKTLEYTIVRTSLLPGLLETLSENKHHELPQKI 443 (551)
T ss_pred HHHHHHHHHHHhCCceeeccceEccHHHHHHHhccCC--CCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcccCCCCeeE
Confidence 9999999999999999999999999987655554332 2468 999999999999999999999999999966668999
Q ss_pred EEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEE
Q 007872 476 YEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASIT 555 (586)
Q Consensus 476 FEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~ 555 (586)
||||+||.++.+.+.+.++.++++++++|...+|+++||+|+++|..+|++ +++.+..++.|||||+|.|+
T Consensus 444 FEiG~Vf~~~~~~~~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~~l~i~---------~~~~~~~~~~~hpgrsa~I~ 514 (551)
T TIGR00471 444 FEIGDVVVKDDKSETRSRVVTKLAVGITHSEANFNEIKSIVAALARELGIE---------YEIEESEHPSFIPGRGAKIV 514 (551)
T ss_pred EEEEEEEEcCCccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHcCCc---------eEEeecCCCccCCCceEEEE
Confidence 999999976532122222337999999998899999999999999999986 67778788899999999999
Q ss_pred ECCEEEEEEEEeCHHHHHHCCCCcccccc
Q 007872 556 HKGKHVGTFGIVHPEVMSSFEQSLKNISY 584 (586)
Q Consensus 556 ~~g~~iG~~GelhP~vl~~~~l~~pv~~~ 584 (586)
++|+.||++|+|||+++++|+|+.||+.+
T Consensus 515 ~~g~~iG~iG~ihP~v~~~~~i~~~v~~~ 543 (551)
T TIGR00471 515 FEGKAIGHFGEIHPEVLTNFELEFPVSAF 543 (551)
T ss_pred ECCcEEEEEEEECHHHHHhCCCCCceEEE
Confidence 99999999999999999999999998763
No 4
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=100.00 E-value=2e-112 Score=946.40 Aligned_cols=536 Identities=38% Similarity=0.656 Sum_probs=469.2
Q ss_pred CCeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhhHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHH
Q 007872 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEG 80 (586)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~G 80 (586)
||||++++++|++++|.++++++|.++|+.+|+|+|+. +|+++|||+|||||||||++|
T Consensus 1 mp~~~~~~~~l~~~~~~~~~~~~l~~~l~~~G~e~~~~---------------------~D~ileieiTpNR~D~ls~~G 59 (552)
T PRK09616 1 MPVIRVNKDDLERLIGIDLEDDELEDLLPMLKCEVEEI---------------------EDDEIKIEFNPDRPDLLSVEG 59 (552)
T ss_pred CCEEEEcHHHHHHHHCCCCCHHHHHHHHHHcCCccccC---------------------CCceEEEEcCCCchhhhhHHH
Confidence 99999999999999999999999999999999999842 366999999999999999999
Q ss_pred HHHHHHHHcCCC-CCCceeccCCCCCCcceEEEeecCCCCCCeEEEEEEeccccCCCCccCHHHHHHHHHhcCCCCCcEE
Q 007872 81 IAQALRVFNKQQ-EIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLV 159 (586)
Q Consensus 81 iARel~a~~g~~-~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~~s~~~lq~kL~~~~~r~r~~V 159 (586)
|||||+|++|.. ..|.+.... ...++.|+....+.||||+|++++||+++++++++|+|||+|||+++|++|+.+
T Consensus 60 iARelaa~~~~~~~~p~~~~~~----~~~~v~v~~~~~~~cp~y~~~~i~~v~v~~s~~~~P~wlq~rL~~~~Gq~r~~~ 135 (552)
T PRK09616 60 LARALRGFLGIETGLPKYEVKD----SDVKVEVDEEVPEIRPYIAGAVVRGVKLDDEALKSLIQLQEKLHWTIGRKRKKV 135 (552)
T ss_pred HHHHHHHHhCCCCCCCceeecC----CceEEEECCCccccCCeEEEEEEECCccCHHHHHhHHHHHHHHHHHhccccccc
Confidence 999999999963 566554321 123344432223799999999999999998778889999999999999889999
Q ss_pred EeeehhhcccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCcceEEEeCCCCeeeecCcc
Q 007872 160 AIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPII 239 (586)
Q Consensus 160 dIgn~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~VI~D~~~~~lslagIi 239 (586)
.||.||+|+|.+|+.|+..++++ .|+||++++++++++|+. +|.++++|++|+.+.+.++||+|++|+++|+||||
T Consensus 136 pi~~~Dldki~~~i~~r~a~~~e-~f~~L~~~~~~~~~e~~~---~~~~~~~y~~L~~~~~~~~vI~D~~~~~lsl~gi~ 211 (552)
T PRK09616 136 AIGIHDLDKIKPPIYYKAVDPDE-KFVPLGFDEEMTLREILE---KHPKGKEYGHLLKDFDRYPLIVDSEGNVLSFPPII 211 (552)
T ss_pred eeEeecHHHCCCCeEEEEeCCCC-eEeeCCCCceeCHHHHHh---hCcccceehhhccCCCCcceEEcCCCCEEecCCcc
Confidence 99999999999999999988876 699999988899999976 89999999999987777899999998799999999
Q ss_pred cCCcceeccCCceEEEEecccChhhHHHHHHHHHHHHHHhhcCCceeeeEEEEeeCCceeeecCCCceEEEeehhHHhhh
Q 007872 240 NGAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHT 319 (586)
Q Consensus 240 gg~~s~It~~T~nI~iE~a~~D~~~~~~~l~~~~~~~~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~~~ 319 (586)
||++|+|+++|||||||+||+|++.+..|+++++.++.++| + ++..+...++ +....+|...++.|.++.++|+++
T Consensus 212 ~~~~s~vt~~Tkni~lE~ag~d~~~~~~al~~~~~ll~~~~-g--~v~~~~~~~~-~~~~~~~~~~~~~i~l~~~~i~~~ 287 (552)
T PRK09616 212 NSELTRVTEGTRNLFIDVTGTDLEAVLLALNIIATALAERG-G--TIESVKVIYP-DGELTTPDLTPRTREVSVEYINKL 287 (552)
T ss_pred CCCceEEcCCCcEEEEEeccCCHHHHHHHHHHHHHHHHHhC-C--EEEEEEEEeC-CCCEeCCCCCceEEEecHHHHHHH
Confidence 99999999999999999999999999999999999999986 2 4555444332 222224546778999999999999
Q ss_pred cCCcCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCcchhHhHHHHhhCcCCCCCCCCCCC---CCChHH
Q 007872 320 IGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALN 396 (586)
Q Consensus 320 lG~~l~~~~i~~~L~~Lg~~~~~~~~~~~~~~l~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~~~~ 396 (586)
||.+++.++|.++|++|||++...+ +. |.|+||+||.||++++||||||||+|||||||+++|... ..++.+
T Consensus 288 lG~~i~~~~i~~iL~~Lgf~~~~~~---~~--~~v~vP~~R~DI~~~~DliEEiaR~yGyd~i~~~~p~~~~~~~~~~~~ 362 (552)
T PRK09616 288 LGIDLSAEEIIELLERMRYDAEIGD---DK--VKVTVPPYRVDILHEVDVIEDVAIAYGYNNLEPELPKVFTIGRLHPIE 362 (552)
T ss_pred hCCCCCHHHHHHHHHHcCCCcEecC---Ce--EEEEeCCCcccccccchHHHHHHHHhCcccCCccCCCCccCCCCChHH
Confidence 9999999999999999999996543 35 999999999999999999999999999999999988622 667788
Q ss_pred HHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCCeeE
Q 007872 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKI 475 (586)
Q Consensus 397 ~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~~l 475 (586)
++.+++|+.|+++||+|++||+|+|+++++..++...+ ...+ |.||+|+|+++||+||+||||+++++|+++..++++
T Consensus 363 ~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~-~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~~~~~~~~l 441 (552)
T PRK09616 363 KLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPE-EDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNKHREYPQKI 441 (552)
T ss_pred HHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCC-CCeEEEcCCCccchheEeccchHHHHHHHHhccCCCCCeeE
Confidence 99999999999999999999999999875666654321 1468 999999999999999999999999999966668999
Q ss_pred EEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEE
Q 007872 476 YEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASIT 555 (586)
Q Consensus 476 FEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~ 555 (586)
||+|+||.++....+...+.++++++++|...+|+++||+|++++..+|++ +++.+..++.|||||||.|+
T Consensus 442 FEiG~Vf~~~~~~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~lgi~---------~~~~~~~~~~~hPg~sa~I~ 512 (552)
T PRK09616 442 FEIGDVVLIDESTETGTRTERKLAAAIAHSEASFTEIKSVVQALLRELGIE---------YEVEESEHPSFIPGRCADIL 512 (552)
T ss_pred EEeeEEEecCCccccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHHcCCe---------EEEecCCCCcccCCceEEEE
Confidence 999999987543223446788999999999999999999999999999986 67778778889999999999
Q ss_pred ECCEEEEEEEEeCHHHHHHCCCCcccccc
Q 007872 556 HKGKHVGTFGIVHPEVMSSFEQSLKNISY 584 (586)
Q Consensus 556 ~~g~~iG~~GelhP~vl~~~~l~~pv~~~ 584 (586)
++|+.||++|+|||+++++|+|+.||+.+
T Consensus 513 ~~g~~iG~iG~lhP~v~~~~~i~~~v~~~ 541 (552)
T PRK09616 513 VNGKKIGVIGEIHPEVLENFGIEVPVVAF 541 (552)
T ss_pred ECCEEEEEEEEECHHHHHhcCCCCceEEE
Confidence 99999999999999999999999998764
No 5
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=100.00 E-value=6.2e-97 Score=839.66 Aligned_cols=511 Identities=18% Similarity=0.292 Sum_probs=427.7
Q ss_pred echHHHHHHhCCC-CCHHHHHHHhhhcCCcccccchhhHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHHHHH
Q 007872 6 VGRDRLFAALGKS-YTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIAQA 84 (586)
Q Consensus 6 ~~~~~l~~~~g~~-~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiARe 84 (586)
++..||.+.+-.+ .+.+.|.+.|++.|+.++.++++. -+..+|+++||++|||||||||++|||||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------------~~~~~D~iiei~iTpNR~D~lS~~GiARE 69 (704)
T CHL00192 3 ISLKWLKELINLENIDLDTLINKLTLAGFEVEDILSVK-------------IGGESDIILDISSTANRSDVLSIQGLSRE 69 (704)
T ss_pred ccHHHHHHhcCcccCCHHHHHhhccCCCccccceeeec-------------cCCCCCEEEEEeCCCChHHHHHhHHHHHH
Confidence 6788999999988 999999999999999999987541 22468999999999999999999999999
Q ss_pred HHHHcCCC--CCCceeccCCCCCCcceEEEeecCC--CCCCeEEEEEEeccccCCCCccCHHHHHHHHHhcCCC-CCcEE
Q 007872 85 LRVFNKQQ--EIPKYTLSDVSKDSMLQMHVKPETS--SIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICR-RRTLV 159 (586)
Q Consensus 85 l~a~~g~~--~~p~~~~~~~~~~~~~~i~V~~~~~--~~rp~~~~~vi~~v~~~~~~~~s~~~lq~kL~~~~~r-~r~~V 159 (586)
|||++|.. ..| .. ..........+.|+++.. +.||+|+|++++||++. +||.|||+||.+++.| +|++|
T Consensus 70 laA~~~~~~~~~p-~~-~~~~~~~~~~~~v~i~~~~~~~c~~y~~~~i~~v~v~----~SP~Wl~~rL~~~Gir~iNniV 143 (704)
T CHL00192 70 ISALFNSDPIKLK-YY-NPSISWFDKLKNLISNDSSKLNCSMFIAVIIENIEIK----DSPKWLQNRLSSSGFKSLNNLT 143 (704)
T ss_pred HHHHhCCCcccCC-Cc-ccCccccCCceeEEEecCCccCCCcEEEEEEeCCCCC----CChHHHHHHHHHcCCcCccHHH
Confidence 99999843 344 11 111101012244444434 68999999999999997 4899999999999998 59999
Q ss_pred EeeehhhcccCCC---eEEEecCC----Cce--EEEeCCCcccCChhHHHhhhccccccccccccccCCCcceEEEeCCC
Q 007872 160 AIGTHDLDTLQGP---FTYEALPP----SHI--NFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNR 230 (586)
Q Consensus 160 dIgn~Dld~i~~p---~~y~~~~~----~~i--~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~VI~D~~~ 230 (586)
|||||.|..++|| |+++++.+ ++| .++... .++.+.+||+++++|.+ ..+||+|+++
T Consensus 144 DiTNyVmle~GqPlHafD~dki~g~~~~~~i~~~Vr~a~-----~ge~~~~Ld~~e~~L~~---------~~LvI~d~~k 209 (704)
T CHL00192 144 DIQNYIMLETGQPIEIYDLDKIYSKNTTSSLALSSKFAL-----QKSSFIASNSKNIELEN---------NILVVQANNV 209 (704)
T ss_pred HHHHHHHHHhCCCchhhhHHhhcCCCccCcceeEEEEcC-----CCCEEEeeCCCEEEcCC---------CCEEEEeCCc
Confidence 9999999999999 77888876 446 788776 45678899999999974 5699999985
Q ss_pred CeeeecCcccCCcceeccCCceEEEEec--------------------------ccChhhHHHHHHHHHHHHHHhhcCCc
Q 007872 231 TVLSLPPIINGAHSAITLKTKNVFIECT--------------------------ATDLTKAKIVLNTMVTIFSEYCKRKY 284 (586)
Q Consensus 231 ~~lslagIigg~~s~It~~T~nI~iE~a--------------------------~~D~~~~~~~l~~~~~~~~~~~~~~~ 284 (586)
|+||||||||++|+|+++||||||||| |+|+..+..|+++++.++.++|++.
T Consensus 210 -~lalAGVmGg~~S~V~~~T~nIlLEsA~F~p~~Irktsr~l~l~TdaS~RfERgvdp~~~~~al~ra~~Li~e~~gg~- 287 (704)
T CHL00192 210 -IISIAGIISNEEIICDKNTKSILIEASIFDAAVIRKSSRKLGLRTDRSIRYEKSLKNDNLLEAYYRLVSLLRILNPKL- 287 (704)
T ss_pred -eeeecceecCCcceecCCccEEEEEEEEeCHHHHHHHHHHhCCcchHHhhhhcCCCHHHHHHHHHHHHHHHHHHcCCC-
Confidence 999999999999999999999999999 4566678889999999999987641
Q ss_pred eeeeEEEEeeCCceeeec-CCCceEEEeehhHHhhhcCC-----c---CCHHHHHHHHHhcCCeEEEcCCCCCcceEEEE
Q 007872 285 QVEPVEVVYADGRSYVYP-DLSAYNMEVSLSYINHTIGV-----S---LEAEEVTSLLNRMQLHAERSASGNNQWNINVL 355 (586)
Q Consensus 285 ~i~~v~v~~~~g~~~~~p-~~~~~~i~l~~~~i~~~lG~-----~---l~~~~i~~~L~~Lg~~~~~~~~~~~~~~l~V~ 355 (586)
++.. +..+ ++ ...++.|.++.++|+++||. + ++.++|.++|++|||++...+++ +. |.|+
T Consensus 288 ~~~~-------~~~~-~~~~~~~~~I~l~~~~i~~iLG~~~~~~~~~~i~~~ei~~iL~~Lgf~v~~~~~~-~~--~~V~ 356 (704)
T CHL00192 288 KCKF-------HFIY-KKIKNSSRRIKLSYKKIKDILGPIKINTNTRYLSPKEITNALKRLNFKITYDSLK-LN--WEVL 356 (704)
T ss_pred EEcc-------ceec-CCCCCCCeeEEeCHHHHHHhcCCCcccCccccCCHHHHHHHHHHCCCEEEecCCC-ce--EEEE
Confidence 1211 1111 22 23568999999999999998 8 99999999999999998643121 14 9999
Q ss_pred cCCCCc-ccCCcchhHhHHHHhhCcCCCCCCCCCCC---CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCC
Q 007872 356 VPPTRS-DVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNR 431 (586)
Q Consensus 356 vP~~R~-DI~~~~DliEEIar~yGydni~~~~p~~~---~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~ 431 (586)
||+||+ ||.+++||||||||+|||||||+++|... ..++.+++.+++|+.|+++||+|++||+|++++. +
T Consensus 357 vP~~R~~DI~~~~DliEEIaRiyGYdnI~~~~p~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Evitysf~s~~~----~-- 430 (704)
T CHL00192 357 IPSYRKDDIVREIDVIEEIARIYGFNNFLSKLPNIKFIGRLDIDYNTRDKIRSYLRNLGLTELIHYSLVKQES----F-- 430 (704)
T ss_pred cCCCCchhcCchhHHHHHHHHhcCcccCcccccccccCCCCCHHHHHHHHHHHHHHhCCCceEecccccChhh----c--
Confidence 999998 99999999999999999999999888532 6677889999999999999999999999999964 1
Q ss_pred CCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCC-CeeEEEeCcEeecCCCcccccccccEEEEEEcCC----
Q 007872 432 QTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPK-PIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGA---- 505 (586)
Q Consensus 432 ~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~-~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~---- 505 (586)
. .+.+ |+||+|+|+++||+||+||||+++++|++|+. ++++||+|+||.++.+ ...+.++++++++|.
T Consensus 431 ~---~~~i~l~NPiS~e~s~lR~SLlpgLL~~~~~N~~r~~~~~rlFEiG~Vf~~~~~---~~~e~~~la~~~~g~~~~~ 504 (704)
T CHL00192 431 S---KNEIKLKNPLIKDYSTLRSSLLPGLIEAVQENLKQGNSTLEGFEIGHVFNLDSS---SIIEETELAGGIFGGIDIR 504 (704)
T ss_pred C---CCcEEEeCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEeeeeEcCCCc---cccccceEEEEEECCCcCc
Confidence 1 2468 99999999999999999999999999999885 6999999999976432 125677899888884
Q ss_pred --------CCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEe----cCCCCccCCceEEEEE-CCEEEEEEEEeCHHHH
Q 007872 506 --------NSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQR----SDEPEFLPGRQASITH-KGKHVGTFGIVHPEVM 572 (586)
Q Consensus 506 --------~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~----~~~~~f~pgr~A~I~~-~g~~iG~~GelhP~vl 572 (586)
..+|+++||+|+++|..+|++ +.+.+ ..+++|||||||.|++ +|+.||++|+|||+++
T Consensus 505 ~~w~~~~~~~dF~d~Kg~le~ll~~l~i~---------~~~~~~~~~~~~~~~hPgrsA~I~~~~g~~iG~iG~lhP~v~ 575 (704)
T CHL00192 505 SSWSEKAQSLNWFEAKGIIENFFQKLNLP---------IYWKKYSDLDEKINFHPYCTSEIFLSNGQKIGIFGQLHPLLA 575 (704)
T ss_pred cccCCCCCccCHHHHHHHHHHHHHHCCCc---------EEEEeccccccCcCCCCCcEEEEEEECCcEEEEEEEECHHHH
Confidence 348999999999999999986 55665 3568899999999999 7899999999999999
Q ss_pred HHCCCCccccc
Q 007872 573 SSFEQSLKNIS 583 (586)
Q Consensus 573 ~~~~l~~pv~~ 583 (586)
++|+|+.|++.
T Consensus 576 ~~~~l~~~v~~ 586 (704)
T CHL00192 576 NKLNLNTEIYL 586 (704)
T ss_pred HHcCCCCCeEE
Confidence 99999999765
No 6
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=100.00 E-value=7.4e-91 Score=802.07 Aligned_cols=466 Identities=24% Similarity=0.387 Sum_probs=383.4
Q ss_pred CceEEEEecCCCcccccCHHHHHHHHHHHcCC-CCCCceeccCCCCCCcceEEEeecCCCCCCeEEEEEEeccc-cCCCC
Q 007872 60 EEVIYKIEVPANRYDLLCLEGIAQALRVFNKQ-QEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDIS-FDEAS 137 (586)
Q Consensus 60 ~d~i~~ieit~NR~Dlls~~GiARel~a~~g~-~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~-~~~~~ 137 (586)
+|+++||++|||||||||++||||||||++|. ...|.+...... ....+.|.++..+.||+|++++++||+ +.
T Consensus 153 ~D~iiei~iTpNR~D~lS~~GiARElaa~~~~~~~~p~~~~~~~~--~~~~~~v~i~~~~~c~~y~~~~i~~v~~~~--- 227 (791)
T PRK00629 153 DDTVIEISLTPNRADCLSVRGIARELAALLGLPLKLPEIEPVPAT--IDDKLPVEIEDPDLCPRYAGRVIKGVKNIA--- 227 (791)
T ss_pred CCeEEEEecCCChHHHHHhHHHHHHHHHhhCCCCCCccccccccc--cCCceEEEecCCCCCccEEEEEEECCCCCC---
Confidence 69999999999999999999999999999986 455653221111 111355555556789999999999999 54
Q ss_pred ccCHHHHHHHHHhcCCC-CCcEEEeeeh------------hhcccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhc
Q 007872 138 YNSFIDLQDKLHQNICR-RRTLVAIGTH------------DLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYK 204 (586)
Q Consensus 138 ~~s~~~lq~kL~~~~~r-~r~~VdIgn~------------Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~ 204 (586)
+||+|||+||++++.| +|++|||+|| |+|++.+++.++...++ .+|++|+ +
T Consensus 228 -~sp~wlq~rL~~~g~~~in~ivDi~Nyv~l~~G~pi~ayD~dki~~~i~vr~~~~~-e~~~~l~--------------~ 291 (791)
T PRK00629 228 -PSPLWLQERLRAAGIRPINNVVDITNYVMLELGQPLHAFDLDKIGGGIVVRRAKEG-EKLTTLD--------------G 291 (791)
T ss_pred -CCHHHHHHHHHhCCCCCcCHHHHHHHHHHHHhCCCceeeeHHHcCCceEEEECCCC-CEEEecC--------------C
Confidence 5999999999999887 5889999985 55555444545444432 3555554 4
Q ss_pred cccccccccccccCCCcceEEEeCCCCeeeecCcccCCcceeccCCceEEEEec--------------------------
Q 007872 205 SDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECT-------------------------- 258 (586)
Q Consensus 205 ~~~~l~~y~~i~~~~~~~~VI~D~~~~~lslagIigg~~s~It~~T~nI~iE~a-------------------------- 258 (586)
+++++. +.++||+|++ +|+|+||||||++|+|+++|||||||+|
T Consensus 292 ~~~~l~---------~~~lvi~d~~-~~lsl~gi~g~~~s~v~~~T~~illE~a~F~p~~Ir~t~r~l~l~t~as~RfeR 361 (791)
T PRK00629 292 KERTLD---------PEDLVIADDK-KPLALAGVMGGEDSEVTENTTNVLLESAYFDPVSIRKTARRLGLRTDASYRFER 361 (791)
T ss_pred ceecCC---------CCcEEEEeCC-CeEEEeeeecCccccccCCCcEEEEEEcccChHHHHHHHHHhCCCchhhhhecc
Confidence 455554 3469999997 5999999999999999999999999999
Q ss_pred ccChhhHHHHHHHHHHHHHHhhcCCceeeeEEEEeeCCceeeecCCCceEEEeehhHHhhhcCCcCCHHHHHHHHHhcCC
Q 007872 259 ATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQL 338 (586)
Q Consensus 259 ~~D~~~~~~~l~~~~~~~~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~~~lG~~l~~~~i~~~L~~Lg~ 338 (586)
|+||+.+..|++++++++.+++++ ++....+ ..+|...++.|.++.++|+++||++++.++|.++|++|||
T Consensus 362 Gvdp~~~~~al~~a~~ll~e~~~g--~i~~~~~-------~~~~~~~~~~I~~~~~~i~~ilG~~i~~~~i~~iL~~Lgf 432 (791)
T PRK00629 362 GVDPALTLLALERATALILELGGG--EVVEGVV-------DVYPLPKEPTITLRLERINRLLGTEISDEEIVDILKRLGF 432 (791)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCC--eEeeeeE-------ecCCCCCCeEEEecHHHHHHHhCCCCCHHHHHHHHHHCCC
Confidence 567777999999999999999643 3322211 1233323789999999999999999999999999999999
Q ss_pred eEEEcCCCCCcceEEEEcCCCCcccCCcchhHhHHHHhhCcCCCCCCCCCC-C---CCChHHHHHHHHHHHHHHCCceEE
Q 007872 339 HAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPAS-V---KPLALNEFSDLMRLEIAMNGFTEV 414 (586)
Q Consensus 339 ~~~~~~~~~~~~~l~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~-~---~~~~~~~~~~~lr~~l~~~Gf~Ev 414 (586)
++...++ +. |.|+||+||+||.+++||||||||+|||||||+++|.. . ..++.+++.+++|+.|+++||+|+
T Consensus 433 ~~~~~~~--~~--~~V~vPs~R~DI~~~~DliEEI~RiyGyd~i~~~~p~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev 508 (791)
T PRK00629 433 EVTEVDG--DG--LTVTVPSWRFDIEIEEDLVEEVARIYGYDNIPSTPPVAALTMGGLTEAQRLLRRLRRALAALGYQEV 508 (791)
T ss_pred EEEecCC--Ce--EEEECCCCccccCcccHHHHHHHHHhCcccCcCcCCCcccCCCCCCHHHHHHHHHHHHHHHCCCcEE
Confidence 9975431 24 99999999999999999999999999999999998862 2 667788899999999999999999
Q ss_pred ecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCC-CeeEEEeCcEeecCCCccccc
Q 007872 415 LTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPK-PIKIYEVGDVVLLDEKKDVGA 492 (586)
Q Consensus 415 ~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~-~~~lFEiG~V~~~~~~~~~g~ 492 (586)
+||+|++++++.. ++.. ...+ |+||+|+|+++||+||+||||+++++|++|+. ++++||+|+||..+. ...
T Consensus 509 ~tysf~~~~~~~~-~~~~---~~~i~l~NPis~e~~~lR~SLlp~LL~~~~~N~~~~~~~i~lFEiG~Vf~~~~---~~~ 581 (791)
T PRK00629 509 ITYSFVSPEDAKL-FGLN---PEPLLLLNPISEELSVMRTSLLPGLLEAVAYNLNRGNKDVALFEIGRVFLPDG---DLP 581 (791)
T ss_pred eccccCCHHHHHh-cCCC---CCeEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEeeeeeeCCCC---CCC
Confidence 9999999987653 4322 2468 99999999999999999999999999999875 699999999997642 234
Q ss_pred ccccEEEEEEcCCC----------CCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEe-cCCCCccCCceEEEEECCEEE
Q 007872 493 SCRRRLAALYCGAN----------SGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQR-SDEPEFLPGRQASITHKGKHV 561 (586)
Q Consensus 493 ~~~~~l~~~~~~~~----------~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~-~~~~~f~pgr~A~I~~~g~~i 561 (586)
.+.+++|++++|.. .+|+++||+|+++|..+|++. +++.+ ..++.|||||||.|+++|+.|
T Consensus 582 ~e~~~la~~~~g~~~~~~w~~~~~~df~~~Kg~le~ll~~l~~~~--------~~~~~~~~~~~~hPg~sA~I~~~g~~i 653 (791)
T PRK00629 582 REPEHLAGVLTGNRVEESWGGKRPVDFFDLKGDVEALLEALGLPE--------VEFVAEFEAAALHPGRSAEIYLDGKVI 653 (791)
T ss_pred cchhEEEEEEECCCccccccccCCCCHHHHHHHHHHHHHHcCCCc--------eeEeecCCCcCcCCceEEEEEECCEEE
Confidence 67889999999952 699999999999999999852 56666 677889999999999999999
Q ss_pred EEEEEeCHHHHHHCCCCcccccc
Q 007872 562 GTFGIVHPEVMSSFEQSLKNISY 584 (586)
Q Consensus 562 G~~GelhP~vl~~~~l~~pv~~~ 584 (586)
|++|+|||+++++|+|+.|++.+
T Consensus 654 G~iG~lhP~v~~~~~l~~~v~~~ 676 (791)
T PRK00629 654 GFIGELHPKVLKKLDLPGRTYVF 676 (791)
T ss_pred EEEEEECHHHHHHcCCCCCEEEE
Confidence 99999999999999999997653
No 7
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=100.00 E-value=1.2e-90 Score=801.63 Aligned_cols=481 Identities=24% Similarity=0.375 Sum_probs=379.7
Q ss_pred CceEEEEecCCCcccccCHHHHHHHHHHHcCC-CCCCceeccCCCCCCcceEEEeecCCCCCCeEEEEEEeccccCCCCc
Q 007872 60 EEVIYKIEVPANRYDLLCLEGIAQALRVFNKQ-QEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASY 138 (586)
Q Consensus 60 ~d~i~~ieit~NR~Dlls~~GiARel~a~~g~-~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~ 138 (586)
+|+++||++|||||||||++||||||||++|. ...|.+............+.|.++..+.||+|++++++||++++
T Consensus 155 ~D~i~ei~itpNR~D~lS~~GiARelaa~~~~~l~~~~~~~~~~~~~~~~~~~v~v~~~~~c~~y~~~~i~~v~~~~--- 231 (798)
T TIGR00472 155 DDDIIEVSITPNRGDCLSILGIARELAALFDLPLETPVPFEPETTETIDEGFKIEIEDPEVCPFYLGRVIKGVKVKP--- 231 (798)
T ss_pred CCeEEEEecCCChHHHHHhHHHHHHHHHhhCCCCCCccccccccccccCCceEEEecCCCCCccEEEEEEeCCCCCC---
Confidence 58999999999999999999999999999996 35454433211101112355555556789999999999999984
Q ss_pred cCHHHHHHHHHhcCCC-CCcEEEeeehhhcccCCC---eEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccc
Q 007872 139 NSFIDLQDKLHQNICR-RRTLVAIGTHDLDTLQGP---FTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLH 214 (586)
Q Consensus 139 ~s~~~lq~kL~~~~~r-~r~~VdIgn~Dld~i~~p---~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~ 214 (586)
||+|||+||++++.| .|++|||+||.+.+.++| |+++++.++.+.++... .++.+..|+++++.+.
T Consensus 232 -sp~wl~~~L~~~g~~~iN~ivDi~Nyv~l~~g~pih~yD~dki~~~~~~vr~~~-----~~e~~~~L~~~~~~l~---- 301 (798)
T TIGR00472 232 -SPLWLKERLRRSGIRPINNIVDITNYVMLELGQPLHAFDADKIEGSNIEVRSAK-----EGESFTTLDGKERELK---- 301 (798)
T ss_pred -ChHHHHHHHHHcCCCCccHHHHHHHHHHHHhCccceeeeHhHcCCCeEEEEEcC-----CCCEEEccCCeEEecC----
Confidence 899999999999888 599999999544444444 22222322111112111 1223333334455553
Q ss_pred cccCCCcceEEEeCCCCeeeecCcccCCcceeccCCceEEEEec--------------------------ccChhhHHHH
Q 007872 215 IIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECT--------------------------ATDLTKAKIV 268 (586)
Q Consensus 215 i~~~~~~~~VI~D~~~~~lslagIigg~~s~It~~T~nI~iE~a--------------------------~~D~~~~~~~ 268 (586)
+..+||+|++ +++|+||||||++|+|+++|||||||+| |+|++.+..|
T Consensus 302 -----~~~lvi~d~~-~~lsi~gi~~~~~s~i~~~T~~i~le~a~f~~~~ir~t~~~l~l~t~as~RferGvd~~~~~~a 375 (798)
T TIGR00472 302 -----KGDLVIADDK-KPLAIAGVMGGKESGVTDTTTNIFLESAYFNPERIRKTARRLGISTDSSYRFERGVDPELTELA 375 (798)
T ss_pred -----CCcEEEEECC-ceEEEeeeecCccccccCCccEEEEEEEeeCHHHHHHHHHHhCCCchhhhhhhcCCCHHHHHHH
Confidence 3459999999 5999999999999999999999999999 5566677999
Q ss_pred HHHHHHHHHHhhcCCceeeeEEEEeeCCceeeecCCCceEEEeehhHHhhhcCCcCCHHHHHHHHHhcCCeEEEcCCCCC
Q 007872 269 LNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNN 348 (586)
Q Consensus 269 l~~~~~~~~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~~~lG~~l~~~~i~~~L~~Lg~~~~~~~~~~~ 348 (586)
++++++++.++|++. +..+.+.. ..|...++.|.++.++|+++||++|+.++|.++|++|||++...+ +
T Consensus 376 l~~~~~ll~e~~~~~--~~~~~~~~------~~~~~~~~~i~~~~~~i~~~lG~~i~~~ei~~iL~~Lgf~~~~~~---~ 444 (798)
T TIGR00472 376 LDRALNLILEIFGGE--VISVVSDV------YKEKAKEKKISLRIKKLNKILGISLSDEEVRDILKRLGFKVEKQK---D 444 (798)
T ss_pred HHHHHHHHHHHhCCe--ecceeeec------cCCCCCCeEEEecHHHHHHHhCCccCHHHHHHHHHHCCCEEEecC---C
Confidence 999999999998652 32221211 135567789999999999999999999999999999999997543 2
Q ss_pred cceEEEEcCCCCcccCCcchhHhHHHHhhCcCCCCCCCCCCC---CCC-hHHHHHHHHHHHHHHCCceEEecccccChHH
Q 007872 349 QWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPL-ALNEFSDLMRLEIAMNGFTEVLTWILCSSKE 424 (586)
Q Consensus 349 ~~~l~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~-~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~ 424 (586)
. |.|+||+||+||++++||||||||+|||||||+++|... ... ..+...+++|+.|+++||+|++||+|+|+++
T Consensus 445 ~--~~V~vP~~R~DI~~~~DliEEI~R~yGydni~~~~p~~~~~~~~~~~~~~~~~~~r~~L~~~Gf~Ev~tysl~s~~~ 522 (798)
T TIGR00472 445 G--WEVTVPSYRHDITIEEDLIEEIARIYGYDNIPAEPLSVSSKLNKNNENYLLLRKLRTLLVGLGLNEVITYSLVSSEK 522 (798)
T ss_pred e--EEEECCCCccccccchhhHhhhhhhhCcccCCCCCCCcccCCCCCCHHHHHHHHHHHHHHHCCCcEEeccccCCHHH
Confidence 4 899999999999999999999999999999999988643 333 3444458999999999999999999999976
Q ss_pred HHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCC-CeeEEEeCcEeecCCCcccccccccEEEEEE
Q 007872 425 ISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPK-PIKIYEVGDVVLLDEKKDVGASCRRRLAALY 502 (586)
Q Consensus 425 ~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~-~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~ 502 (586)
... ++.+.+ ...+ |+||+|+|+++||+||+||||+++++|++++. ++++||+|+||..+.+ . .++.+++|+++
T Consensus 523 ~~~-~~~~~~-~~~i~l~NPis~e~s~lR~SLlpgLL~~~~~N~~~~~~~~~lFEiG~V~~~~~~--~-~~e~~~La~~~ 597 (798)
T TIGR00472 523 AEK-FNFPKL-ENLVEIKNPLSNERSVLRTSLLPSLLEVLAYNQNRKNKDVKIFEIGKVFAKDGL--G-VKEQLRLAILI 597 (798)
T ss_pred HHh-hcCCCC-CceEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEeeecccCCCCC--C-cchhhEEEEEE
Confidence 543 333321 1268 99999999999999999999999999999875 5999999999975432 1 56888999999
Q ss_pred cCCC-----------CCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEe-cCCCCccCCceEEEEECCEEEEEEEEeCHH
Q 007872 503 CGAN-----------SGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQR-SDEPEFLPGRQASITHKGKHVGTFGIVHPE 570 (586)
Q Consensus 503 ~~~~-----------~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~-~~~~~f~pgr~A~I~~~g~~iG~~GelhP~ 570 (586)
+|.. .+|+++||+|+++|..+|+... +.+.+ ..++.|||||||.|+++|+.||++|+|||+
T Consensus 598 ~g~~~~~~~~~~~~~~df~d~Kg~le~ll~~l~~~~~-------~~~~~~~~~~~~hpg~sA~I~~~~~~iG~iG~lhP~ 670 (798)
T TIGR00472 598 SGEKNPSSWNHKEEKVDFYDLKGDVESLLELLGLSDD-------VYFKNTAENEELHPGQSATIYLKGKKIGFIGELHPE 670 (798)
T ss_pred ECCCCcccccCCCCcCChHHHHHHHHHHHHHcCCCcc-------eEEeecCCCCCCCCCcEEEEEECCEEEEEEEEECHH
Confidence 9853 6899999999999999987521 33444 556789999999999999999999999999
Q ss_pred HHHHCCCCcccccc
Q 007872 571 VMSSFEQSLKNISY 584 (586)
Q Consensus 571 vl~~~~l~~pv~~~ 584 (586)
++++|+|+.|++.+
T Consensus 671 v~~~~~l~~~v~~~ 684 (798)
T TIGR00472 671 IAKKYDLKEPTFVA 684 (798)
T ss_pred HHHHcCCCCCeEEE
Confidence 99999999998753
No 8
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-86 Score=747.75 Aligned_cols=479 Identities=28% Similarity=0.440 Sum_probs=399.3
Q ss_pred CceEEEEecCCCcccccCHHHHHHHHHHHcCC-CCCCceeccCCCCCCcceEEEeecC-CCCCCeEEEEEEeccccCCCC
Q 007872 60 EEVIYKIEVPANRYDLLCLEGIAQALRVFNKQ-QEIPKYTLSDVSKDSMLQMHVKPET-SSIRPYVVCAVLRDISFDEAS 137 (586)
Q Consensus 60 ~d~i~~ieit~NR~Dlls~~GiARel~a~~g~-~~~p~~~~~~~~~~~~~~i~V~~~~-~~~rp~~~~~vi~~v~~~~~~ 137 (586)
+|.++++++||||+||+|+.|+|||+++.++. ...|.............++.+..+. +..||+|.+++++|+++..
T Consensus 12 ~d~i~e~~~tpnr~D~ls~~GiarE~aa~~~~~~~~~~~~d~~~~~~~~~~~~v~ie~~~~~~~~~~~~~i~~v~~~~-- 89 (650)
T COG0072 12 DDLIIEISITPNRADCLSMLGIARELAAEYDLKLEFPKIRDLESAEGLARKIFLEIEAGKYACPRYAGRVIKGVKVNA-- 89 (650)
T ss_pred ccceeeccCCCCHHHhhccccceeehhhhcCCcccccccccccccccccceeEeecccccccCCccceEEEECcccCC--
Confidence 46689999999999999999999999999875 3444432111111112257777766 5899999999999999653
Q ss_pred ccCHHHHHHHHHhcCCC-CCcEEEeeehhhcccCCC---eEEEecCCCceEEEeCCCcccCChhHHHhhhcccccccccc
Q 007872 138 YNSFIDLQDKLHQNICR-RRTLVAIGTHDLDTLQGP---FTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYL 213 (586)
Q Consensus 138 ~~s~~~lq~kL~~~~~r-~r~~VdIgn~Dld~i~~p---~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~ 213 (586)
.||.|+|.+|...+.| .+++||++||.+..+++| |++..... ++.++-... ++++..|++.++++..
T Consensus 90 -~sP~~~~~~l~~~gir~in~lVDitnyv~l~~Gqp~h~~d~~~~~~-~i~vr~a~~-----~e~~~~ld~~~~~l~~-- 160 (650)
T COG0072 90 -PSPLWLQARLRGVGIRPINNLVDITNYVHLELGQPRHAFDIGKIDG-KIPVRYAKE-----GETLVFLDGKERELLT-- 160 (650)
T ss_pred -CCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHhCCcchHhhhhhccC-ceEEEEccC-----CCceEecCCcceeeCC--
Confidence 5899999999998877 599999999888888888 66666655 466665443 3346666667777753
Q ss_pred ccccCCCcceEEEeCCCCeeeecCcccCCcceeccCCceEEEEec--------------------------ccChhhHHH
Q 007872 214 HIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECT--------------------------ATDLTKAKI 267 (586)
Q Consensus 214 ~i~~~~~~~~VI~D~~~~~lslagIigg~~s~It~~T~nI~iE~a--------------------------~~D~~~~~~ 267 (586)
...||+|.++ ++|+||||||++|+++++|+|+++|+| |+|+..+..
T Consensus 161 -------~~~vi~d~~~-~~alagv~g~~~s~~~~~t~d~~~E~a~f~Pi~i~~~~r~l~~~T~~~~r~~rGvD~~~v~~ 232 (650)
T COG0072 161 -------GDLVIADHEK-GLALAGVMGGADSEVDPNTTDVLLEVASFPPIIISKTSRRLGLDTEASFRFERGVDPELVEK 232 (650)
T ss_pred -------CCEEEEeCCC-ceeeeeeeeccccCCCccceeeeeeeEecChHHHHhhcccccCCcceeEEeecCCCHHHHHH
Confidence 4589999885 889999999999999999999999999 789999999
Q ss_pred HHHHHHHHHHHhhcCCceeeeEEEEeeCCceeeecCCCceEEEeehhHHhhhcCCcCCHHHHHHHHHhcCCeEEEcCCCC
Q 007872 268 VLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGN 347 (586)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~~~lG~~l~~~~i~~~L~~Lg~~~~~~~~~~ 347 (586)
|+++++++|+++|+ +++.++.+.+. ..... +++.+.++.++|+++||.+++.++++++|+||||.+...++
T Consensus 233 al~~~~~ll~e~~g--g~v~~~~~~~~--~~~~~---~~~~i~~~~~~i~~llG~~ls~eei~~iL~rLg~~~~~~~~-- 303 (650)
T COG0072 233 ALNRATTLLAEICG--GEVSSVVIVGG--DEKLT---PPRKIELRLERINRLLGLELSAEEIEKILKRLGFKVEVKGD-- 303 (650)
T ss_pred HHHHHHHHHHHhcC--CeeeeEEEecC--CcCCC---CCceEEecHHHHHHHhCCCCCHHHHHHHHHHcCCeeEecCC--
Confidence 99999999999996 46777766542 11111 27899999999999999999999999999999999987653
Q ss_pred CcceEEEEcCCCCcccCCcchhHhHHHHhhCcCCCCCCCCCCC---C--CChHHHHHHHHHHHHHHCCceEEecccccCh
Q 007872 348 NQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---K--PLALNEFSDLMRLEIAMNGFTEVLTWILCSS 422 (586)
Q Consensus 348 ~~~~l~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~--~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~ 422 (586)
. |.|+||+||+||+|++||||||||+||||||++++|... . .++.+++.+++|+.|+++||+|++||+|+|+
T Consensus 304 -~--~~V~vPs~R~DI~~e~DliEEv~r~yGy~ni~~~~p~~~~~~~~~~~~~~~~~r~vr~~l~~~G~~Evitysl~s~ 380 (650)
T COG0072 304 -G--LTVTVPSYRVDILIEADLIEEVARIYGYNNIPPELPSAFTIGRGGLTPLQKFRRKVRRALVGLGFQEVITYSLTSP 380 (650)
T ss_pred -c--EEEeCCCCcccccchhHHHHHHHHHhCcccCCCcCCcccccccCCCChHHHHHHHHHHHHHhCCcceEeeeccCCH
Confidence 4 899999999999999999999999999999999999755 3 6788899999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCC-eeEEEeCcEeecCCCcccccccccEEEE
Q 007872 423 KEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP-IKIYEVGDVVLLDEKKDVGASCRRRLAA 500 (586)
Q Consensus 423 ~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~-~~lFEiG~V~~~~~~~~~g~~~~~~l~~ 500 (586)
+.+..++.... +++ |+||+|+|+++||+|||||||+++++|+||++| +++||+|+||..+++.. ++..++++
T Consensus 381 e~~~~~~~~~~---~~~~l~NPiS~e~s~mR~sLlp~LL~~~~~N~~r~~~~~~iFEiG~v~~~~~~~~---~~~~~~~~ 454 (650)
T COG0072 381 EEAKLFGLEND---EALELANPISEEYSVLRTSLLPGLLEALSYNKNRKNPDVRIFEIGDVFVKDEEAE---RETRHLAG 454 (650)
T ss_pred HHHHHhccCCC---cceEecCCcchhHHHHHHHHHHHHHHHHHHhhccCCCCeeEEEeeeeEecCCccc---chhHHHHH
Confidence 99888775432 278 999999999999999999999999999999998 99999999999875432 22222333
Q ss_pred EEcC----------CCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEECCEEEEEEEEeCHH
Q 007872 501 LYCG----------ANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPE 570 (586)
Q Consensus 501 ~~~~----------~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g~~iG~~GelhP~ 570 (586)
+++| ..++|+++||+|+++|+.+|+. +++.+.++++|||||||.|+++++.||+||+|||+
T Consensus 455 l~~g~~~~~~w~~~~~v~f~d~Kg~ve~ll~~lg~~---------~~~~~~~~~~~hpgrsA~I~~~~~~iG~iGeiHP~ 525 (650)
T COG0072 455 LAAGLAGEESWQGKRPVDFYDAKGDLEALLEALGVE---------YEFEPAEHPAFHPGRSAAIYLNKEVIGFIGELHPE 525 (650)
T ss_pred HhhccccccccccCCCcCHHHHHHHHHHHHHHhCCc---------eEEEEccCCCccCCceEEEEECCEEEEEEeeeCHH
Confidence 3322 2688999999999999999987 89999998999999999999998899999999999
Q ss_pred HHHHCCCCcccccc
Q 007872 571 VMSSFEQSLKNISY 584 (586)
Q Consensus 571 vl~~~~l~~pv~~~ 584 (586)
++++|+|++|++++
T Consensus 526 vl~~~dl~~~~~~f 539 (650)
T COG0072 526 VLKEFDLPGPVYVF 539 (650)
T ss_pred HHHhcCCCCCeEEE
Confidence 99999999998653
No 9
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=100.00 E-value=1.3e-37 Score=304.05 Aligned_cols=176 Identities=30% Similarity=0.560 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCC-CCe
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHP-KPI 473 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~-~~~ 473 (586)
+.+.+++|+.|+++||+|++||+|+++++... +... ..+.| |.||+|+|+++||+||+||||+++++|++++ .++
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~-~~~~--~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~ 79 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEAEL-FDGG--LDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPL 79 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHHHh-ccCC--CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 56889999999999999999999999976543 3222 13578 9999999999999999999999999999988 579
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEcCCC-----------CCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecC
Q 007872 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGAN-----------SGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSD 542 (586)
Q Consensus 474 ~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~-----------~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~ 542 (586)
++||||+||.++.. .+.+.++++++++|.. .+|+++||+++.+|..+|+.. .|...+..
T Consensus 80 ~lFEiG~vf~~~~~---~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l~~~~-------~~~~~~~~ 149 (198)
T cd00769 80 RLFEIGRVFLKDED---GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRALGIIV-------EFELEELD 149 (198)
T ss_pred eEEEeEeEEecCCC---CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHcCCeE-------EEEecCCC
Confidence 99999999976531 3467889999999963 599999999999999999741 14433366
Q ss_pred CCCccCCceEEEEECCEEEEEEEEeCHHHHHHCCCCcccccc
Q 007872 543 EPEFLPGRQASITHKGKHVGTFGIVHPEVMSSFEQSLKNISY 584 (586)
Q Consensus 543 ~~~f~pgr~A~I~~~g~~iG~~GelhP~vl~~~~l~~pv~~~ 584 (586)
.++|||||||+|+++|+.+|++|+|||+++++|+|+.|++.+
T Consensus 150 ~~~~hpg~~a~I~~~g~~vG~~G~lhP~v~~~~~l~~~v~~~ 191 (198)
T cd00769 150 ADLFHPGRSAKIYVNGEVIGFIGELHPEVLKEFDLKEPVYAF 191 (198)
T ss_pred CCccCCCceEEEEECCEEEEEEEeeCHHHHHHcCCCCceEEE
Confidence 678999999999999999999999999999999999997653
No 10
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=100.00 E-value=1.1e-32 Score=273.18 Aligned_cols=178 Identities=17% Similarity=0.174 Sum_probs=149.6
Q ss_pred ChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCC-----CCce-eeCCccCCchhhcccchHHHHHHHHhc
Q 007872 393 LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDE-----STAV-VGNPRTSDFEVVRTTLMPGILKTIGHN 466 (586)
Q Consensus 393 ~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~-----~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N 466 (586)
++.+++.+++|+.|+++||+|++||+|++.+..++.++...+. .+.+ |.||+ +++||+||+||||+++++|
T Consensus 1 ~~~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~---~~~LR~sLlp~LL~~l~~N 77 (218)
T cd00496 1 HPLNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPA---RLLLRTHTSAVQARALAKL 77 (218)
T ss_pred ChHHHHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCc---eEEEeccCcHHHHHHHHhc
Confidence 4678899999999999999999999999996555555433210 0468 99999 9999999999999999999
Q ss_pred cCCCCCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCCCCCCCccEEEEecCCC
Q 007872 467 KDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIG--TPFVPVGDDTGYYIQRSDEP 544 (586)
Q Consensus 467 ~~~~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~lg--i~~~~~~~~~~~~~~~~~~~ 544 (586)
..++++||||+||.++........+.++++++.+|...+|+++||++++++..+| +.. +++.+...+
T Consensus 78 ---~~~~~lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l~~~~~~--------~~~~~~~~~ 146 (218)
T cd00496 78 ---KPPIRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKELFGPITK--------VRFRPSYFP 146 (218)
T ss_pred ---CCCeeEEEEcCeEECCCCCCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCce--------eEecCCcCC
Confidence 5579999999999876422122337889999999988899999999999999998 441 556666678
Q ss_pred CccCCceEEEEECC----EEEEEEEEeCHHHHHHCCC--Ccccccc
Q 007872 545 EFLPGRQASITHKG----KHVGTFGIVHPEVMSSFEQ--SLKNISY 584 (586)
Q Consensus 545 ~f~pgr~A~I~~~g----~~iG~~GelhP~vl~~~~l--~~pv~~~ 584 (586)
.+|||++|.|+++| +.||++|+|||+++++||| +.|++++
T Consensus 147 ~~hp~~sa~i~~~g~~~~~~iG~~G~lhP~vl~~~~i~~~~~v~~~ 192 (218)
T cd00496 147 FTEPSFEVDVYCPGCLGWLEILGCGMVRPEVLENAGIDEEYSGFAF 192 (218)
T ss_pred CCCCcEEEEEEeCCCCCeEEEEecccccHHHHHHCCCCCCceEEEE
Confidence 89999999999999 8999999999999999999 9887753
No 11
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.97 E-value=3.2e-30 Score=271.23 Aligned_cols=195 Identities=13% Similarity=0.164 Sum_probs=171.2
Q ss_pred HHHHhhCcCCCCCCCC--------CCC---CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-
Q 007872 372 DVAIAYGYNNIPKRKP--------ASV---KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV- 439 (586)
Q Consensus 372 EIar~yGydni~~~~p--------~~~---~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v- 439 (586)
+|+|+||||+|++++| ... +.++.+++.+.+|+.|.++||+|++|++|++.+ .++.|+... ..
T Consensus 208 ~v~~~~gf~~~ep~lP~~~~~~~~~~~TiG~~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE-~~E~m~~~~----g~e 282 (453)
T TIGR02367 208 SLNMAKPFRELEPELLSRRKKDFQQIYAEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAE-YIERMGIDN----DTE 282 (453)
T ss_pred hhHHhccccccCcccCcccccccccccccCcccHHHHHHHHHHHHHHHCCCEEEECCeecchH-HHHhhcCcc----CCc
Confidence 3599999999999999 333 889999999999999999999999999999654 567776532 25
Q ss_pred eeCCc--cCCchhhcccchHHHHHHHHhccC-CCCCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHH
Q 007872 440 VGNPR--TSDFEVVRTTLMPGILKTIGHNKD-HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLV 516 (586)
Q Consensus 440 l~NP~--s~e~~~lR~sLlpgLL~~l~~N~~-~~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~l 516 (586)
+.||+ +.++.+||++|+|+|++.++.|.+ ...|+|+||||+||+.+..+.++.++.+++++.++|...+|.++++++
T Consensus 283 I~n~Iyk~ee~lvLRPdLTPsLaR~La~N~~~l~~PqKIFEIGkVFR~E~~~~thlREF~QL~~eIaG~~atfaDlealL 362 (453)
T TIGR02367 283 LSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLEAII 362 (453)
T ss_pred ccccceEecCceEecccCHHHHHHHHHHhhhhccCCeeEEEEcCeEecCCCCCCCcCeEEEEEEEEECCCCCHHHHHHHH
Confidence 78888 788999999999999999998765 567999999999998877666778899999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEECCEEE--EEEEEeCHHHHHHCCCCcccccc
Q 007872 517 DRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGKHV--GTFGIVHPEVMSSFEQSLKNISY 584 (586)
Q Consensus 517 e~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g~~i--G~~GelhP~vl~~~~l~~pv~~~ 584 (586)
..+|+.||++ |.+. .++.|++||+|+|+.++..+ |+||++|| +++|||.+||++|
T Consensus 363 ~e~Lr~LGId---------feit--E~s~FI~GR~A~I~~G~~Ev~~GvfGEihp--L~~fGIe~PVvAf 419 (453)
T TIGR02367 363 KDFLDHLEID---------FEIV--GDSCMVYGDTLDIMHGDLELSSAVVGPIPL--DREWGIDKPWIGA 419 (453)
T ss_pred HHHHHHCCCc---------eEEe--CCCceEecceeeeecCCEEEeeEEEeeccc--ccccCCCCccEEE
Confidence 9999999997 7775 45889999999999666655 99999997 9999999999987
No 12
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=99.97 E-value=3.5e-29 Score=258.12 Aligned_cols=184 Identities=20% Similarity=0.177 Sum_probs=154.2
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCC-ccCCchhhcccchHHHHHHHHhccC
Q 007872 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNP-RTSDFEVVRTTLMPGILKTIGHNKD 468 (586)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP-~s~e~~~lR~sLlpgLL~~l~~N~~ 468 (586)
..++.+++.+++|+.|+++||+|++||+|+++..+++.++.+.+ ..+. +.++ ...|+++|||||+|+||+++++|++
T Consensus 70 ~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~-hpar~~~d~~~l~d~~vLRtsl~p~ll~~l~~N~~ 148 (294)
T TIGR00468 70 SLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQD-HPARDMQDTFYIKDRLLLRTHTTAVQLRTMEENEK 148 (294)
T ss_pred CcCHHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCC-CcchhhccceeecCCcceecccHHHHHHHHHhcCC
Confidence 78899999999999999999999999999999777887765531 1111 2121 1128999999999999999999988
Q ss_pred CCCCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccC
Q 007872 469 HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLP 548 (586)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~p 548 (586)
.|+|+||+|+||+++..+.++..+.+++++++.+...+|+++||+|++++..++++. .+.++++..|.+||
T Consensus 149 --~pirlFEiGrVfr~d~~d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~l~~~~-------~~~~~~~~~p~~~P 219 (294)
T TIGR00468 149 --PPIRIFSPGRVFRNDTVDATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKKMFGET-------EIRFRPSYFPFTEP 219 (294)
T ss_pred --CCceEEEecceEEcCCCCCccCChhhEEEEEEECCCCCHHHHHHHHHHHHHHhCCCc-------ceeeccCCCCCCCC
Confidence 679999999999876432233448889999999988999999999999999999852 15677888888999
Q ss_pred CceEEEEE-CCE---EEEEEEEeCHHHHHHCCCCc--ccccc
Q 007872 549 GRQASITH-KGK---HVGTFGIVHPEVMSSFEQSL--KNISY 584 (586)
Q Consensus 549 gr~A~I~~-~g~---~iG~~GelhP~vl~~~~l~~--pv~~~ 584 (586)
|++|+|++ +|+ .||++|+|||+|++++||+. |+++|
T Consensus 220 s~e~~i~~~~g~~w~eiG~~G~vhP~Vl~~~gi~~~~~v~af 261 (294)
T TIGR00468 220 SAEIDVYCWEGKTWLEVLGAGMFRPEVLEPMGIDPTYPGFAW 261 (294)
T ss_pred CEEEEEEEeCCCccEEEEEeccCcHHHHHHCCCCCCCeEEEE
Confidence 99999999 788 89999999999999999999 87765
No 13
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=99.96 E-value=2.6e-28 Score=244.83 Aligned_cols=185 Identities=28% Similarity=0.377 Sum_probs=164.9
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCC-----CCce-eeCCcc--CCchhhcccchHHHHHH
Q 007872 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDE-----STAV-VGNPRT--SDFEVVRTTLMPGILKT 462 (586)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~-----~~~v-l~NP~s--~e~~~lR~sLlpgLL~~ 462 (586)
+.+|.+++.+++|++|+++||+|+.++.+++...+|+.|+.+.+. .+.+ ++||.+ ++..+|||++.|+++++
T Consensus 15 ~~hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~ 94 (247)
T PF01409_consen 15 RLHPITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRT 94 (247)
T ss_dssp BTSHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHH
Confidence 899999999999999999999999999999999999999987652 3457 999999 99999999999999999
Q ss_pred HHhccCCCCCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCCCCCCCccEEEEec
Q 007872 463 IGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI-GTPFVPVGDDTGYYIQRS 541 (586)
Q Consensus 463 l~~N~~~~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~l-gi~~~~~~~~~~~~~~~~ 541 (586)
+ |.+++.|+|+||+|+||+++..+.++..+.+++.++++++..+|.++||.|+.+++.+ |.+.. +.++++
T Consensus 95 l--~~~~~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lfG~~~~-------~r~~ps 165 (247)
T PF01409_consen 95 L--NKHRPPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELFGIDVK-------VRFRPS 165 (247)
T ss_dssp H--TTTSHSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHHTTTEE-------EEEEEC
T ss_pred H--HHhcCCCeEEEecCceEecCCcccccCccceeEeeEEEecccchhHHHHHHHHHHHHHhhcccc-------eEeecC
Confidence 9 7777789999999999999887778888999999999999999999999999999999 98621 788999
Q ss_pred CCCCccCCceEEEEE----C--CEEEEEEEEeCHHHHHHCCC--Ccccccc
Q 007872 542 DEPEFLPGRQASITH----K--GKHVGTFGIVHPEVMSSFEQ--SLKNISY 584 (586)
Q Consensus 542 ~~~~f~pgr~A~I~~----~--g~~iG~~GelhP~vl~~~~l--~~pv~~~ 584 (586)
..|.++||++++|++ + +..||.+|++||+|++++|+ ++|++||
T Consensus 166 ~fPftePs~e~~i~~~~~~~~~wiEvgg~G~vhP~Vl~~~gid~~~~~~A~ 216 (247)
T PF01409_consen 166 YFPFTEPSREADIYCGVCKGGGWIEVGGCGMVHPEVLENWGIDEEYPGFAF 216 (247)
T ss_dssp EETTEEEEEEEEEEEECTTTTCEEEEEEEEEE-HHHHHHTT--TTSEEEEE
T ss_pred CCCcccCCeEEEEEEeeccCCCceEEeecccccHhhhhccCcCccceEEEe
Confidence 999999999999999 3 34799999999999999999 8898886
No 14
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=99.92 E-value=3.6e-24 Score=229.00 Aligned_cols=180 Identities=16% Similarity=0.312 Sum_probs=143.7
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCC---------------CC----------------------
Q 007872 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNR---------------QT---------------------- 433 (586)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~---------------~~---------------------- 433 (586)
++||.+....+||+.-.++||.|++|...+.+.+.+..++. +.
T Consensus 45 ~~hp~~~ti~~lr~ayl~~gf~e~~np~iv~~~~~~~qfg~ea~avldr~fyl~glprp~vg~~~~~~~~i~~~~~~~~~ 124 (529)
T PRK06253 45 KPHPVYDTIERLREAYLRMGFEEMINPVIVDEQDIYKQFGPEAMAVLDRCFYLAGLPRPNVGISDEKIEQIEEILGRDLS 124 (529)
T ss_pred CCCcHHHHHHHHHHHHHhcChHhhcCceeecHHHHHHhhCHHHHHHHHHhhhhcCCCCCCCCcCHHHHHHHHHHhCCCCC
Confidence 89999999999999999999999999999999886654321 10
Q ss_pred -------------------CCCCce--eeC------------------------CccCCchhhcccchHHHHHHHHhccC
Q 007872 434 -------------------DESTAV--VGN------------------------PRTSDFEVVRTTLMPGILKTIGHNKD 468 (586)
Q Consensus 434 -------------------~~~~~v--l~N------------------------P~s~e~~~lR~sLlpgLL~~l~~N~~ 468 (586)
++++.+ |++ |.+ -+++||+||+||||+++++|++
T Consensus 125 ~~~~e~l~~~lh~ykkg~~~gddl~~e~~~~l~~~~~~~~~~l~~vfpe~k~l~p~~-~~svLRtSLlPGLL~tLs~Nl~ 203 (529)
T PRK06253 125 EEKIESLREVLHSYKKGEIDGDDLVLEISKALEVSDEMVLKILDEVFPEFKELKPES-SRLTLRSHMTSGWFITLSSLLE 203 (529)
T ss_pred hhHHHHHHHHHHHhhcCCCccchhHHHHHHhcCCChHHHHHHHHHhChHhhhcCCcc-ccCccccchHHHHHHHHHHHHh
Confidence 011111 111 222 2799999999999999999998
Q ss_pred CCC-CeeEEEeCcEeecCCCcccccccccEEEEEEcC------CCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEec
Q 007872 469 HPK-PIKIYEVGDVVLLDEKKDVGASCRRRLAALYCG------ANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRS 541 (586)
Q Consensus 469 ~~~-~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~------~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~ 541 (586)
++. |+++||+|+||.++.+ .+..+++.+.+| ...+|+++||+++.||..+|+.. +.+.+.
T Consensus 204 Rg~~piRLFEIGRVFr~d~~-----eE~t~La~llsGs~W~~~e~vDFfDlKGiLE~LL~~LGI~~--------i~f~ps 270 (529)
T PRK06253 204 KRPLPIKLFSIDRCFRREQR-----EDASRLMTYHSASCVIADEDVTVDDGKAVAEGLLSQFGFTK--------FKFRPD 270 (529)
T ss_pred CCCCCEEEEEEeeEEecCCc-----cchhheeEEEEccccccCCCCCHHHHHHHHHHHHHHcCCCe--------EEEeec
Confidence 764 7999999999976532 144566666555 35689999999999999999862 566666
Q ss_pred --CCCCccCCceEEEEE-----CC-EEEEEEEEeCHHHHHHCCCCcccccc
Q 007872 542 --DEPEFLPGRQASITH-----KG-KHVGTFGIVHPEVMSSFEQSLKNISY 584 (586)
Q Consensus 542 --~~~~f~pgr~A~I~~-----~g-~~iG~~GelhP~vl~~~~l~~pv~~~ 584 (586)
..++|||||+|+|++ +| +.||++|++||+++++|||+.|++++
T Consensus 271 e~~~p~fHPGRSAeI~v~hp~~dGwkeIG~fGELHP~VLk~fDI~~pV~aF 321 (529)
T PRK06253 271 EKRSKYYTPDTQTEVYAYHPKLDGWVEVATFGIYSPVALAEYGIDVPVMNL 321 (529)
T ss_pred ccCCCCcCCCeEEEEEEEeecCCCCEEEEEEEEECHHHHHHcCCCCceEEE
Confidence 557899999999999 88 78999999999999999999998764
No 15
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.91 E-value=2.4e-23 Score=220.29 Aligned_cols=176 Identities=16% Similarity=0.211 Sum_probs=151.2
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCc--cCCchhhcccchHHHHHHHHhcc
Q 007872 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPR--TSDFEVVRTTLMPGILKTIGHNK 467 (586)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~--s~e~~~lR~sLlpgLL~~l~~N~ 467 (586)
+.++..++.+.+|+.|.++||+|+.|++|++.+. ++.++...+ . +.+|+ ++++.+||++|+|+|++.++.|.
T Consensus 202 ~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~-~e~~g~~~g----~~i~~~my~ideel~LRpsLtPsLlr~la~n~ 276 (417)
T PRK09537 202 REDYLGKLERDITKFFVDRGFLEIKSPILIPAEY-IERMGIDND----TELSKQIFRVDKNFCLRPMLAPGLYNYLRKLD 276 (417)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHH-HHHhCCCCc----ccchhhheeeCCceEehhhhHHHHHHHHHhhh
Confidence 7889999999999999999999999999997764 666654321 2 44555 56789999999999999999886
Q ss_pred C-CCCCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCc
Q 007872 468 D-HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEF 546 (586)
Q Consensus 468 ~-~~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f 546 (586)
+ ...|+|+||+|+||+.+....++.++.+++++.+.|...+|++++++++.+|+.||++ |.+. .++.|
T Consensus 277 k~~~~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~~~f~dL~~lleeLL~~LGI~---------f~i~--s~~~f 345 (417)
T PRK09537 277 RILPDPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSGCTRENLENIIDDFLKHLGID---------YEII--GDNCM 345 (417)
T ss_pred hcccCCeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCchHHHHHHHHHHHHHHHCCCC---------cEEe--cCCcc
Confidence 5 4579999999999988765455667888999999999899999999999999999997 6665 45589
Q ss_pred cCCceEEEEECCEEE--EEEEEeCHHHHHHCCCCcccccc
Q 007872 547 LPGRQASITHKGKHV--GTFGIVHPEVMSSFEQSLKNISY 584 (586)
Q Consensus 547 ~pgr~A~I~~~g~~i--G~~GelhP~vl~~~~l~~pv~~~ 584 (586)
++||+|+|..+++.+ |+||++| |+++|||.+||++|
T Consensus 346 i~GR~adI~~g~~el~~G~fGEi~--VLe~fGI~~PVva~ 383 (417)
T PRK09537 346 VYGDTIDIMHGDLELSSAVVGPIP--LDREWGIDKPWIGA 383 (417)
T ss_pred eecCeEEEEeCCEEEeeEEEEEEe--hhhhcCCCCceEEE
Confidence 999999999998877 9999996 99999999999886
No 16
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.89 E-value=1.5e-22 Score=197.97 Aligned_cols=171 Identities=16% Similarity=0.192 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCCee
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~~ 474 (586)
+.+.+++|+.|+++||+|++||+|++.+.... .... ...+ +.||++.+..+||+|++|+++++++.|. +..|++
T Consensus 3 ~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~-~~~~~~ 77 (211)
T cd00768 3 SKIEQKLRRFMAELGFQEVETPIVEREPLLEK-AGHE---PKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHI-RKLPLR 77 (211)
T ss_pred HHHHHHHHHHHHHcCCEEeEcceecHHHHHHH-cCcc---HhheeeeecCCCCEEEECCCCcHHHHHHHHhhc-ccCCEE
Confidence 56889999999999999999999999866433 2221 2347 9999999999999999999999999999 667899
Q ss_pred EEEeCcEeecCCCcc--cccccccEEEEEEcCCCC----CHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecC-CCCc-
Q 007872 475 IYEVGDVVLLDEKKD--VGASCRRRLAALYCGANS----GFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSD-EPEF- 546 (586)
Q Consensus 475 lFEiG~V~~~~~~~~--~g~~~~~~l~~~~~~~~~----~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~-~~~f- 546 (586)
+||+|+||+.+.... ...++..++++.++|... +|+++|++++.++..+|++.. +.+.... .+.+
T Consensus 78 lfeig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~lg~~~~-------~~~~~~~~~~~~~ 150 (211)
T cd00768 78 LAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGIKLD-------IVFVEKTPGEFSP 150 (211)
T ss_pred EEEEcceeecCCCccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHcCCCcc-------eEEEecCchhhcc
Confidence 999999997754321 224677888888888654 699999999999999997311 4554333 3334
Q ss_pred -cCCceEEEEEC-----CEEEEEEEEeCHHHHHHCCCC
Q 007872 547 -LPGRQASITHK-----GKHVGTFGIVHPEVMSSFEQS 578 (586)
Q Consensus 547 -~pgr~A~I~~~-----g~~iG~~GelhP~vl~~~~l~ 578 (586)
|||++|+|.++ |+.||.+|++||.++++|+|.
T Consensus 151 ~~~g~~~~i~~~~~~~~~~eig~~g~~~~~~~~~~~l~ 188 (211)
T cd00768 151 GGAGPGFEIEVDHPEGRGLEIGSGGYRQDEQARAADLY 188 (211)
T ss_pred ccCCceEEEEEEccCCCeEEEeeceeecCchhHhhhhh
Confidence 99999999999 999999999999999999986
No 17
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=99.88 E-value=8.8e-22 Score=206.87 Aligned_cols=185 Identities=14% Similarity=0.278 Sum_probs=156.0
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCC---------------C--C--------------------
Q 007872 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNR---------------Q--T-------------------- 433 (586)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~---------------~--~-------------------- 433 (586)
++||.+....+||+.-.++||.|++|...+.+.+.+..++. + .
T Consensus 45 k~hpv~~ti~~lreayl~~gf~e~~np~iv~e~~v~kqfg~ea~avldrcfyl~glprp~vgis~~~~~~i~~~g~~~~~ 124 (533)
T TIGR00470 45 KPHPLMETIERLREAYLRMGFSEMVNPLIVDEMHIYKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKIEIIENLGIDIDD 124 (533)
T ss_pred CCCcHHHHHHHHHHHHHhcChHhhcCceeecHHHHHHhhCHHHHHHHHHhhhhcCCCCCCcCcCHHHHHHHHHhCCCCCh
Confidence 89999999999999999999999999999999886654321 1 0
Q ss_pred ------------------CCCCce--eeC------------------------CccCCchhhcccchHHHHHHHHh-ccC
Q 007872 434 ------------------DESTAV--VGN------------------------PRTSDFEVVRTTLMPGILKTIGH-NKD 468 (586)
Q Consensus 434 ------------------~~~~~v--l~N------------------------P~s~e~~~lR~sLlpgLL~~l~~-N~~ 468 (586)
++++.+ |+| |.|. ..+|||+++|+++.+++. |.+
T Consensus 125 ~~~e~lr~~lh~ykkg~idgddl~~eia~~l~~~d~~~~~ild~vfpefk~l~p~s~-~~lLRTHTTpgqirtL~~L~~~ 203 (533)
T TIGR00470 125 EKKERLREVFHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETVFPEFKDLKPEST-TLTLRSHMTSGWFITLSSIIDK 203 (533)
T ss_pred hHHHHHHHHHHHhhcCCCccchhHHHHHHhhCCchHHHHHHHHHhChhhhhcChHhh-CcccccCChhHHHHHHHHHhhc
Confidence 011111 222 3333 468999999999999997 777
Q ss_pred CCCCeeEEEeCcEeecCCC-cccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCC--CC
Q 007872 469 HPKPIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDE--PE 545 (586)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~~-~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~--~~ 545 (586)
+..|+|+|++|+||++++. +.++..+.+++.++++++..+|.++||+++.+++.+|... +.|+++++ ++
T Consensus 204 ~~~PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~LG~~~--------vRFRPsekrsky 275 (533)
T TIGR00470 204 RKLPLKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQFGFTK--------FRFRPDEKKSKY 275 (533)
T ss_pred CCCCeEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHhCCce--------EEeccCcCCCCC
Confidence 7789999999999999864 4488899999999999999999999999999999998742 78898865 88
Q ss_pred ccCCceEEEEECC------EEEEEEEEeCHHHHHHCCCCcccccc
Q 007872 546 FLPGRQASITHKG------KHVGTFGIVHPEVMSSFEQSLKNISY 584 (586)
Q Consensus 546 f~pgr~A~I~~~g------~~iG~~GelhP~vl~~~~l~~pv~~~ 584 (586)
|+|+++|+|.+.+ ..||.+|++||+||++|||+.|+++|
T Consensus 276 YFPFTEaEVdV~~~k~~gWiEIgG~GmVhPeVL~~~GId~PV~AF 320 (533)
T TIGR00470 276 YIPETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNIDVPVMNL 320 (533)
T ss_pred cCCCceEEEEEEccCCCceEEEEeccccCHHHHHHcCCCCceEEE
Confidence 9999999999855 68999999999999999999999886
No 18
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.86 E-value=1.2e-20 Score=208.04 Aligned_cols=184 Identities=18% Similarity=0.216 Sum_probs=155.7
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCC-----CCce-eeCCccC------------------
Q 007872 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDE-----STAV-VGNPRTS------------------ 446 (586)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~-----~~~v-l~NP~s~------------------ 446 (586)
..++..++.+.+|+++..+||+|+-+..+-+.-++|+.++.+.+. .+.. +.+|-..
T Consensus 231 ~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he~g~ 310 (489)
T PRK04172 231 KKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHEHGG 310 (489)
T ss_pred CCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHhccC
Confidence 889999999999999999999999998888887888888765431 2345 7665421
Q ss_pred ----------------CchhhcccchHHHHHHHHhccCCCCCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHH
Q 007872 447 ----------------DFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFE 510 (586)
Q Consensus 447 ----------------e~~~lR~sLlpgLL~~l~~N~~~~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~ 510 (586)
...+|||++.|++++.++.+ +..|+|+||||+||+.+..+.+..++.++++++++|...+|+
T Consensus 311 ~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~--~~~p~rlFeiGrVFR~e~~d~~~l~Ef~ql~~~i~G~~~~f~ 388 (489)
T PRK04172 311 DTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASR--PEPPQKYFSIGRVFRPDTIDATHLPEFYQLEGIVMGEDVSFR 388 (489)
T ss_pred CCCCccccCCcchhhhhccccccCChHHHHHHHHhc--CCCCeEEEEecceEcCCCCCcccCCchheEEEEEEeCCCCHH
Confidence 12489999999999999984 346899999999998754333445788899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEECC---EEEEEEEEeCHHHHHHCCCCcccccc
Q 007872 511 LIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKG---KHVGTFGIVHPEVMSSFEQSLKNISY 584 (586)
Q Consensus 511 ~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g---~~iG~~GelhP~vl~~~~l~~pv~~~ 584 (586)
+++|+++.++..+|+.. +.+++..+|.+||+++|.|+++| +.||++|++||+|+++|||+.||++|
T Consensus 389 elkg~l~~ll~~lGi~~--------~~~~~~~~p~~~P~~~~~i~~~g~~w~eiG~~G~l~Pevl~~~gi~~~v~~~ 457 (489)
T PRK04172 389 DLLGILKEFYKRLGFEE--------VKFRPAYFPFTEPSVEVEVYHEGLGWVELGGAGIFRPEVLEPLGIDVPVLAW 457 (489)
T ss_pred HHHHHHHHHHHHhCCce--------EEEcCCcCCCCCCeEEEEEEECCCCeEEEEeccccCHHHHHHCCCCCceEEE
Confidence 99999999999999852 77888888999999999999977 78999999999999999999998875
No 19
>PF03483 B3_4: B3/4 domain; InterPro: IPR005146 This entry represents the B3/B4 domain found in tRNA synthetase beta subunits as well as in some non-tRNA synthetase proteins. This domain has a 3-layer structure, and contains a beta-sandwich fold of unusual topology, and contains a putative tRNA-binding structural motif []. In Thermus thermophilus, both the catalytic alpha- and the non-catalytic beta-subunits comprise the characteristic fold of the class II active-site domains. The presence of an RNA-binding domain, similar to that of the U1A spliceosomal protein, in the beta-subunit of tRNA synthetase indicates structural relationships among different families of RNA-binding proteins. Aminoacyl-tRNA synthetases can catalyse editing reactions to correct errors produced during amino acid activation and tRNA esterification, in order to prevent the attachment of incorrect amino acids to tRNA. The B3/B4 domain of the beta subunit contains an editing site, which lies close to the active site on the alpha subunit []. Disruption of this site abolished tRNA editing, a process that is essential for faithful translation of the genetic code.; GO: 0003723 RNA binding, 0004826 phenylalanine-tRNA ligase activity; PDB: 3L4G_P 2CXI_B 3PCO_D 2AKW_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 1B70_B 2RHS_D ....
Probab=99.86 E-value=7.7e-22 Score=188.69 Aligned_cols=135 Identities=27% Similarity=0.340 Sum_probs=105.4
Q ss_pred CCCeEEEEEEeccccCCCCccCHHHHHHHHHhcCCC-CCcEEEeee------------hhhcccCCCeEEEecCCCceEE
Q 007872 119 IRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICR-RRTLVAIGT------------HDLDTLQGPFTYEALPPSHINF 185 (586)
Q Consensus 119 ~rp~~~~~vi~~v~~~~~~~~s~~~lq~kL~~~~~r-~r~~VdIgn------------~Dld~i~~p~~y~~~~~~~i~f 185 (586)
.||+|.+++++|++... +||.|||+||.+.+.+ .|++|||.| ||+|++.+|+.++...++ .+|
T Consensus 1 ~c~~~~~~~~~~i~~~~---~sp~~L~~rL~~~g~~~iN~lvDi~N~i~l~~g~pi~~~D~dki~~~i~~~~~~~~-e~~ 76 (174)
T PF03483_consen 1 ACRRYFSRVIKNINKNR---PSPEWLKRRLKKSGILPINNLVDIQNYISLETGQPIGAYDLDKIKGPITLRLAKGG-EKF 76 (174)
T ss_dssp CSSEEEEEEEESB-TTH---HH-HHHHHHHHHTT---HHHHHHHHHHHHHHHTTEEEEEEGGGTBSEEEEEEESTT-EEE
T ss_pred CcchhhEEEEECCCCCc---CCHHHHHHHHHhCCCcccccHHHHHHHHHHHhCCCCchhhHhHCCCCEEEEEecCC-ceE
Confidence 49999999999999664 5899999999998877 489999877 899999889988887765 489
Q ss_pred EeCCCcccCChhHHHhhhccccccccccccccCCCcceEEEeCCCCeeeecCcccCCcceeccCCceEEEEecccCh---
Q 007872 186 VPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECTATDL--- 262 (586)
Q Consensus 186 ~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~VI~D~~~~~lslagIigg~~s~It~~T~nI~iE~a~~D~--- 262 (586)
.|+++. +.++. +.+|||+|+++ ++|+||||||++|+|+++|||||||++++|+
T Consensus 77 ~~l~~~--------------~~~l~---------~~~~vi~D~~~-~i~~~gi~~~~~t~i~~~T~~ilie~~~~~~~~i 132 (174)
T PF03483_consen 77 TPLGGK--------------EVELD---------EGDLVICDDNG-IISIAGIIGSERTKITENTKNILIEVAGFDPKSI 132 (174)
T ss_dssp EBTTSE--------------EEEEC---------TTCEEEECTTC-EEEETTTEEBSTTC--TT--EEEEEEEES-HHHH
T ss_pred EECCCc--------------eeecc---------ceEEEEEECCC-CEeeccccCCccceeEcCCCeEEEEEeecCHHHH
Confidence 999752 33342 25699999997 8899999999999999999999999998655
Q ss_pred -----------------------hhHHHHHHHHHHHHHHhhc
Q 007872 263 -----------------------TKAKIVLNTMVTIFSEYCK 281 (586)
Q Consensus 263 -----------------------~~~~~~l~~~~~~~~~~~~ 281 (586)
..+..|+++++.+|.++|+
T Consensus 133 ~~~~~~~~l~t~~~~r~~k~~~~~~~~~a~~~~~~ll~~~~g 174 (174)
T PF03483_consen 133 RKSSKKLKLRTDASYRYEKGIDPNLLLNALNRATSLLLEICG 174 (174)
T ss_dssp HHHHHHTT---HHHHHHHH-S-TTCHHHHHHHHHHHHHHHST
T ss_pred HHHHHhcCcccHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 4577788888888888874
No 20
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=99.85 E-value=7.5e-20 Score=189.08 Aligned_cols=176 Identities=16% Similarity=0.184 Sum_probs=151.5
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCC-----CCce-eeCCccCCchhhcccchHHHHHHHH
Q 007872 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDE-----STAV-VGNPRTSDFEVVRTTLMPGILKTIG 464 (586)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~-----~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~ 464 (586)
+.||.+++.+.+|++|+++||+|+.++.+++...+|+.|+.+.+. .+.+ | +++.+|||++.|+++++++
T Consensus 106 ~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI-----~~~~lLRThTSp~qir~L~ 180 (339)
T PRK00488 106 SLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYI-----DDGLLLRTHTSPVQIRTME 180 (339)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEE-----cCCceeeccCcHHHHHHHH
Confidence 889999999999999999999999999999999999999987542 2457 7 5789999999999999998
Q ss_pred hccCCCCCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCCCCCCCccEEEEecCC
Q 007872 465 HNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI-GTPFVPVGDDTGYYIQRSDE 543 (586)
Q Consensus 465 ~N~~~~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~l-gi~~~~~~~~~~~~~~~~~~ 543 (586)
. +..|+|+||+|+||+.+..+.++....+++.+++.++..+|.++||.|+.+++.+ |-.. ...++|+..
T Consensus 181 ~---~~~Pirif~~G~VyR~D~~DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~fg~~~-------~~R~rpsyF 250 (339)
T PRK00488 181 K---QKPPIRIIAPGRVYRNDSDDATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFFGEDV-------KIRFRPSYF 250 (339)
T ss_pred h---cCCCeEEEEeeeEEEcCCCCcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHcCCCC-------eEEecCCCC
Confidence 6 4578999999999998865567778889999999999999999999999999988 5221 278888888
Q ss_pred CCccCCceEEEEEC-------------C-EEEEEEEEeCHHHHHHCCCCccc
Q 007872 544 PEFLPGRQASITHK-------------G-KHVGTFGIVHPEVMSSFEQSLKN 581 (586)
Q Consensus 544 ~~f~pgr~A~I~~~-------------g-~~iG~~GelhP~vl~~~~l~~pv 581 (586)
|.-.|+...+|.+. | -.||-.|.+||+||++.|++.+.
T Consensus 251 PFTePS~Evdv~~~~~~g~gc~~ck~~~WiEilG~Gmv~p~vl~~~gid~~~ 302 (339)
T PRK00488 251 PFTEPSAEVDVSCFKCGGKGCRVCKGTGWLEILGCGMVHPNVLRNVGIDPEE 302 (339)
T ss_pred CCCCCceEEEEEEeccCCCcccccCCCCceEEeccCccCHHHHHHcCCCccc
Confidence 88889887788763 2 36888999999999999997553
No 21
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=99.82 E-value=1.5e-20 Score=152.55 Aligned_cols=70 Identities=31% Similarity=0.615 Sum_probs=59.5
Q ss_pred ceEEEeehhHHhhhcCCcCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCcchhHhHHHHhhCc
Q 007872 306 AYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGY 379 (586)
Q Consensus 306 ~~~i~l~~~~i~~~lG~~l~~~~i~~~L~~Lg~~~~~~~~~~~~~~l~V~vP~~R~DI~~~~DliEEIar~yGy 379 (586)
+++|.++.++++++||++++.+++.++|++|||++...++ +. |.|+||+||.||+|++||+|||||+|||
T Consensus 1 p~~i~~~~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~--~~--~~v~vP~~R~Di~~~~DliEEiaR~yGY 70 (70)
T PF03484_consen 1 PKKITLSLDKINKLLGIDISPEEIIKILKRLGFKVEKIDG--DT--LEVTVPSYRFDIEHEEDLIEEIARIYGY 70 (70)
T ss_dssp -EEEEEEHHHHHHHHTS---HHHHHHHHHHTT-EEEE-CT--TE--EEEEEETTSTT-SSHHHHHHHHHHHHTG
T ss_pred CeEEEecHHHHHHHhCCCCCHHHHHHHHHHCCCEEEECCC--CE--EEEEcCCCcCCcCcccHHHHHHHHHhCC
Confidence 4789999999999999999999999999999999987433 35 9999999999999999999999999998
No 22
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=99.79 E-value=2.6e-19 Score=145.85 Aligned_cols=70 Identities=34% Similarity=0.597 Sum_probs=64.0
Q ss_pred eEEEeehhHHhhhcCCcCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCcchhHhHHHHhhCc
Q 007872 307 YNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGY 379 (586)
Q Consensus 307 ~~i~l~~~~i~~~lG~~l~~~~i~~~L~~Lg~~~~~~~~~~~~~~l~V~vP~~R~DI~~~~DliEEIar~yGy 379 (586)
++++++.+++++++|.+++.+++.++|++|||++...+++ +. +.|.+|+||+||+|++||||||||+|||
T Consensus 2 ~~i~~~~~~i~~llG~~i~~~ei~~~L~~lg~~~~~~~~~-~~--~~v~~P~~R~Di~~~~DliEei~r~~Gy 71 (71)
T smart00874 2 RTITLRRERINRLLGLDLSAEEIEEILKRLGFEVEVSGDD-DT--LEVTVPSYRFDILIEADLIEEVARIYGY 71 (71)
T ss_pred cEEEecHHHHHHHHCCCCCHHHHHHHHHHCCCeEEecCCC-Ce--EEEECCCCccccCcccHHHHHHHHHhCC
Confidence 5799999999999999999999999999999999764322 35 9999999999999999999999999998
No 23
>smart00873 B3_4 B3/4 domain. This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Probab=99.60 E-value=2.8e-15 Score=143.07 Aligned_cols=143 Identities=21% Similarity=0.312 Sum_probs=105.0
Q ss_pred CCeEEEEEEeccccCCCCccCHHHHHHHHHhcCCC-CCcEEEeeehhhcccCCCeE-EEe--cCCCceEEEeCCCcccCC
Q 007872 120 RPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICR-RRTLVAIGTHDLDTLQGPFT-YEA--LPPSHINFVPLKQTRDFT 195 (586)
Q Consensus 120 rp~~~~~vi~~v~~~~~~~~s~~~lq~kL~~~~~r-~r~~VdIgn~Dld~i~~p~~-y~~--~~~~~i~f~~L~~~~~~~ 195 (586)
||++.++++++++.. ++||+|||+|||+++++ .|.+||+.||++.+.+.|+. |++ +.++ +.+|...+ .
T Consensus 1 ~~~~~~~~~~~~~~~---~~s~~~l~~rL~~~~~~~~n~~vdi~n~~~l~~g~p~~~~D~d~i~~~---~l~l~~~~--~ 72 (174)
T smart00873 1 CPRYLGRVIRGVKNT---RPSPEWLQERLHRAGIRPINNVVDITNYVSLETGQPLHAFDLDKIKGK---DIPLRRAK--E 72 (174)
T ss_pred CCcEEEEEEECCCCC---CCCHHHHHHHHHHcCCCCcchhhhHHHHHHHHhCCCCeeEcHHHcCCC---eEEEEECC--C
Confidence 788999999998864 26899999999999887 58899999988888887732 443 2222 23333221 2
Q ss_pred hhHHHhhhccccccccccccccCCCcceEEEeCCCCeeeecCcccCCcceeccCCceEEEEec-----------------
Q 007872 196 ADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECT----------------- 258 (586)
Q Consensus 196 ~~el~~l~~~~~~l~~y~~i~~~~~~~~VI~D~~~~~lslagIigg~~s~It~~T~nI~iE~a----------------- 258 (586)
++++..+.+++..+.+ ..+|++|+++ +++++|+||+++++|+++|+++++|++
T Consensus 73 ~e~~~~l~~~~~~~~~---------~~~vi~d~~~-~~~i~g~~g~~~~~~~~~t~~i~~~~~~~~~~~i~~~~~~~~i~ 142 (174)
T smart00873 73 GETFETLDGKEYELDE---------GDLVIADDEG-PLALAGVMGGEESEVTENTTNIFLEPAIFSPRTIRITARTLNLF 142 (174)
T ss_pred CCEEEecCCcEEecCC---------CCEEEEeCCc-CEEEEEEecCCcceecCCCCEEEEEEEEeCcHHHHHHHHHcCCc
Confidence 3334444445554432 3489999886 899999999999999999999999998
Q ss_pred ---------ccChhhHHHHHHHHHHHHHHhh
Q 007872 259 ---------ATDLTKAKIVLNTMVTIFSEYC 280 (586)
Q Consensus 259 ---------~~D~~~~~~~l~~~~~~~~~~~ 280 (586)
|+|++.+..|++.++.+|.++|
T Consensus 143 ~~~~~~~~~g~~~~~~~~al~~l~~ll~~~~ 173 (174)
T smart00873 143 TDASGRFERGVDPELVELALDRAAALLLEIC 173 (174)
T ss_pred ceeeecccCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3566667777777777777764
No 24
>PLN02788 phenylalanine-tRNA synthetase
Probab=99.60 E-value=5e-14 Score=149.32 Aligned_cols=187 Identities=14% Similarity=0.108 Sum_probs=150.8
Q ss_pred cCCCCCCCCCC-----C--CCChHHHHHHHHHHHHHHC---CceEEec-ccccChHHHHHHcCCCCCC-----CCce-ee
Q 007872 379 YNNIPKRKPAS-----V--KPLALNEFSDLMRLEIAMN---GFTEVLT-WILCSSKEISTMLNRQTDE-----STAV-VG 441 (586)
Q Consensus 379 ydni~~~~p~~-----~--~~~~~~~~~~~lr~~l~~~---Gf~Ev~t-~sl~s~~~~~~~l~~~~~~-----~~~v-l~ 441 (586)
+.|+|+..-.. . ..||...+.+.+++++.++ ||.++-. ....+...||+.|+.+.+. .+.. |
T Consensus 47 ~~n~~~~i~~~~~~~l~~~~~HPl~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~- 125 (402)
T PLN02788 47 TNNVPDHIFSKIGMQLHRRPDHPLGILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYV- 125 (402)
T ss_pred cCCCChhHhccCCccCCCCCCChHHHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEe-
Confidence 56776544321 1 7899999999999999998 9999876 7788888899999877652 2345 6
Q ss_pred CCccCCchhhcccchHHHHHHHHhccCCCCCeeEEEeCcEeecCCCcccccccccEEEEEEcC------------CCCCH
Q 007872 442 NPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCG------------ANSGF 509 (586)
Q Consensus 442 NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~------------~~~~f 509 (586)
| +-.+|||.--+.-.+.++.+. + ++|-+|+||++|.-+.++....+++-++... ...+|
T Consensus 126 ~----~~~lLRTHTSa~q~~~l~~~~----~-~~~~~g~VyRrD~iD~tH~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~ 196 (402)
T PLN02788 126 D----AQTVLRCHTSAHQAELLRAGH----T-HFLVTGDVYRRDSIDATHYPVFHQMEGVRVFSPEEWEASGLDGTDLAA 196 (402)
T ss_pred c----CCccccCCCcHHHHHHHHhCC----C-cEEEEeeEeecCCCCcccCccceeEEEEEEecccccccccccccccCH
Confidence 3 357999999999999999642 2 8999999999987666777777777776553 23679
Q ss_pred HHHHHHHHHHHHHh-CCCCCCCCCCccEEEEecCCCCccCCceEEEEECCE---EEEEEEEeCHHHHHHCCCCc-ccccc
Q 007872 510 ELIHCLVDRIMEVI-GTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGK---HVGTFGIVHPEVMSSFEQSL-KNISY 584 (586)
Q Consensus 510 ~~ikg~le~ll~~l-gi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g~---~iG~~GelhP~vl~~~~l~~-pv~~~ 584 (586)
.++||.|+.++..+ |... +.+.++..|++|||++|+|+++|+ .+| +|++||+|++++|++. .+++|
T Consensus 197 ~dLKg~Le~l~~~lfg~~~--------~r~~~s~fPft~Ps~e~dI~~~g~WlEvlG-~G~vhP~Vl~~~gi~~~~g~Af 267 (402)
T PLN02788 197 EDLKKTLEGLARHLFGDVE--------MRWVDAYFPFTNPSFELEIFFKGEWLEVLG-CGVTEQEILKNNGRSDNVAWAF 267 (402)
T ss_pred HHHHHHHHHHHHHhcCCCc--------eEEecCCCCCCCCCeEEEEEECCEEEEEee-EEEEcHHHHHHcCCCCCcEEEE
Confidence 99999999999988 8742 677888889999999999999998 788 9999999999999988 45553
No 25
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=5.5e-14 Score=144.87 Aligned_cols=202 Identities=18% Similarity=0.156 Sum_probs=163.5
Q ss_pred hHHHHhhCcCCCCCCCCCCC----CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCC-----CCce-e
Q 007872 371 EDVAIAYGYNNIPKRKPASV----KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDE-----STAV-V 440 (586)
Q Consensus 371 EEIar~yGydni~~~~p~~~----~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~-----~~~v-l 440 (586)
.+..+-.=+..+..++|... +.||...+.+.+++++.++||+|+-..-.-+...+|+.|+.+.+. .+.. +
T Consensus 85 ~~~~~~l~~e~~dv~lp~~~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~ 164 (335)
T COG0016 85 AGLWERLAFEKIDVTLPGRRIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYL 164 (335)
T ss_pred HHHHHhhhccCCCcCCCCccCCCCCcChHHHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccccceEEE
Confidence 33334444555665666432 889999999999999999999999999888888899999887652 2345 6
Q ss_pred eCCccCCchhhcccchHHHHHHHHhccCCCCCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHH
Q 007872 441 GNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIM 520 (586)
Q Consensus 441 ~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll 520 (586)
.+ +.+..+|||.-.|--.++++.|... |+|+|-+|+||+.|..+.++..+.+++-+++.++..+|.++||.|+.++
T Consensus 165 ~~--~~~~~lLRTHTs~vq~R~l~~~~~~--P~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~ 240 (335)
T COG0016 165 KD--DREKLLLRTHTSPVQARTLAENAKI--PIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFADLKGTLEEFA 240 (335)
T ss_pred cC--CCCceeecccCcHhhHHHHHhCCCC--CceEecccceecCCCCCcccchheeeeEEEEEeCCccHHHHHHHHHHHH
Confidence 55 3336799999999999999887543 8999999999999877778888899999999999999999999999999
Q ss_pred HHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEECCE----EEEEEEEeCHHHHHHCC-CCcccc
Q 007872 521 EVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGK----HVGTFGIVHPEVMSSFE-QSLKNI 582 (586)
Q Consensus 521 ~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g~----~iG~~GelhP~vl~~~~-l~~pv~ 582 (586)
..++-... ...|+|+..|+-.|.--.+|++.+. .||-.|.+||+||++.| .+.++.
T Consensus 241 ~~~fg~~~------~vRfrpsyFPFTEPS~Evdv~~~~~~~WlEi~G~Gmv~P~VL~~~G~~~~~~~ 301 (335)
T COG0016 241 KKFFGEDV------KVRFRPSYFPFTEPSAEVDVYCPGCGGWLEILGCGMVHPNVLEAVGIDPEEYS 301 (335)
T ss_pred HHhcCCCc------ceEeecCCCCCCCCeEEEEEEEcCCCCEEEEecccccCHHHHHhcCCCCCcce
Confidence 99973211 1788998888888977788888643 68999999999999999 555666
No 26
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=99.59 E-value=6.2e-14 Score=150.97 Aligned_cols=186 Identities=15% Similarity=0.162 Sum_probs=155.6
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEe-cccccChHHHHHHcCCCCCC-----CCce-eeCCccC-----------------
Q 007872 391 KPLALNEFSDLMRLEIAMNGFTEVL-TWILCSSKEISTMLNRQTDE-----STAV-VGNPRTS----------------- 446 (586)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~-t~sl~s~~~~~~~l~~~~~~-----~~~v-l~NP~s~----------------- 446 (586)
..||..++.+.+|++|.++||.|+- .....+.-.||+.|+.+.+. .+.. |.+|...
T Consensus 219 ~~HPl~~~~~ei~~if~~mGF~e~~~g~~ves~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk~~He~ 298 (492)
T PLN02853 219 HLHPLLKVRQQFRKIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVKTVHES 298 (492)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEecCCCCeechhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHHHHHhc
Confidence 8999999999999999999999994 55556777799999877542 3467 8877543
Q ss_pred -----------------CchhhcccchHHHHHHHHhccCCC-CCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCC
Q 007872 447 -----------------DFEVVRTTLMPGILKTIGHNKDHP-KPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSG 508 (586)
Q Consensus 447 -----------------e~~~lR~sLlpgLL~~l~~N~~~~-~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~ 508 (586)
...+|||+-.+.-.+.++.+.+.+ .|+|+|-+|+||+++.-+.++..+.+++-+++.+...+
T Consensus 299 G~~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~iDatH~~eFhQ~EG~vvd~~~t 378 (492)
T PLN02853 299 GGYGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAVDRTHLAEFHQVEGLVCDRGLT 378 (492)
T ss_pred CCCCccccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCCCcccCccceeEEEEEEeCCCC
Confidence 358999999999999999765543 47999999999998876668888999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEEC--C--EEEEEEEEeCHHHHHHCCCCcc--cc
Q 007872 509 FELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHK--G--KHVGTFGIVHPEVMSSFEQSLK--NI 582 (586)
Q Consensus 509 f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~--g--~~iG~~GelhP~vl~~~~l~~p--v~ 582 (586)
|.+++|.++.++..+|... ..|+|+..|+-.|+-..+++.. | -.||-.|.+||+|++..|++.+ ++
T Consensus 379 ~~~L~g~l~~f~~~lg~~~--------~RfrP~yfPfTEPS~Ei~v~~~~~gkWiEi~g~Gm~rpevl~~~Gi~~~~~~~ 450 (492)
T PLN02853 379 LGDLIGVLEDFFSRLGMTK--------LRFKPAYNPYTEPSMEIFSYHEGLKKWVEVGNSGMFRPEMLLPMGLPEDVNVI 450 (492)
T ss_pred HHHHHHHHHHHHHHcCCce--------EEEecCCCCCCCCeEEEEEEecCCCCEEEEecCcCcCHHHHHhCCCCCcceEE
Confidence 9999999999999998742 7889988888888777777654 4 3789999999999999999544 67
Q ss_pred cc
Q 007872 583 SY 584 (586)
Q Consensus 583 ~~ 584 (586)
||
T Consensus 451 A~ 452 (492)
T PLN02853 451 AW 452 (492)
T ss_pred EE
Confidence 66
No 27
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=99.56 E-value=1.4e-13 Score=149.02 Aligned_cols=186 Identities=17% Similarity=0.152 Sum_probs=156.3
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEecc-cccChHHHHHHcCCCCCC-----CCce-eeCCccCC----------------
Q 007872 391 KPLALNEFSDLMRLEIAMNGFTEVLTW-ILCSSKEISTMLNRQTDE-----STAV-VGNPRTSD---------------- 447 (586)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~-sl~s~~~~~~~l~~~~~~-----~~~v-l~NP~s~e---------------- 447 (586)
..||..++.+.+|++|.++||+|+-+. ...+.-.||+.|+.+.+. .+.. |.+|...+
T Consensus 227 ~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~~~Vk~~H 306 (494)
T PTZ00326 227 NLHPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVERVKKVH 306 (494)
T ss_pred CCChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHHHHHHHHh
Confidence 899999999999999999999999765 566777799999877542 3467 88875442
Q ss_pred --------------------chhhcccchHHHHHHHHhccCC-----C-CCeeEEEeCcEeecCCCcccccccccEEEEE
Q 007872 448 --------------------FEVVRTTLMPGILKTIGHNKDH-----P-KPIKIYEVGDVVLLDEKKDVGASCRRRLAAL 501 (586)
Q Consensus 448 --------------------~~~lR~sLlpgLL~~l~~N~~~-----~-~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~ 501 (586)
..+|||...+...+.++.+.+. . .|+|+|-+|+||+.+..+.++..+.+++.++
T Consensus 307 e~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~DatH~~eFhQ~Eg~ 386 (494)
T PTZ00326 307 EVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLDATHLAEFHQVEGF 386 (494)
T ss_pred ccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCCCCCcCceeEEEEEE
Confidence 5799999999999999987542 2 3799999999999987667788899999999
Q ss_pred EcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEEC--C--EEEEEEEEeCHHHHHHCCC
Q 007872 502 YCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHK--G--KHVGTFGIVHPEVMSSFEQ 577 (586)
Q Consensus 502 ~~~~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~--g--~~iG~~GelhP~vl~~~~l 577 (586)
+.+...+|.+++|++..++..+|+.. ..|+|+..|+-.|+-...+++. | -.||-.|.+||+|++..|+
T Consensus 387 vi~~~~s~~~L~~~l~~f~~~lG~~~--------~RfrP~yfPfTEPS~Ev~v~~~~~gkWIEIgg~Gm~rpevL~~~Gi 458 (494)
T PTZ00326 387 VIDRNLTLGDLIGTIREFFRRIGITK--------LRFKPAFNPYTEPSMEIFGYHPGLKKWVEVGNSGIFRPEMLRPMGF 458 (494)
T ss_pred EEeCCCCHHHHHHHHHHHHHhcCCCc--------eEEecCCCCCCCCeeEEEEEecCCCcEEEEeCcCccCHHHHHhcCC
Confidence 99999999999999999999999842 7889988888889777777664 3 4799999999999999999
Q ss_pred Cc--ccccc
Q 007872 578 SL--KNISY 584 (586)
Q Consensus 578 ~~--pv~~~ 584 (586)
+. +++||
T Consensus 459 ~~~~~~~A~ 467 (494)
T PTZ00326 459 PEDVTVIAW 467 (494)
T ss_pred CCcceEEEE
Confidence 64 46766
No 28
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=3.2e-14 Score=161.46 Aligned_cols=216 Identities=24% Similarity=0.238 Sum_probs=174.5
Q ss_pred CCeEEechHHHHHHhC-CCCCHHHHHHHhhhcCCcccccchhhHHHhhhccccccCCCCCCceEEEEecCCCcccccCHH
Q 007872 1 MPTVSVGRDRLFAALG-KSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLE 79 (586)
Q Consensus 1 Mp~i~~~~~~l~~~~g-~~~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~ 79 (586)
||++...+..|...+- .++ .....+.|.++|++.|..... -.+++.++.| |++|..
T Consensus 1 ~g~~~~~~~~L~d~i~e~~~-tpnr~D~ls~~GiarE~aa~~---------------------~~~~~~~~~~-d~~~~~ 57 (650)
T COG0072 1 MPTIVREYLDLDDLIIEISI-TPNRADCLSMLGIARELAAEY---------------------DLKLEFPKIR-DLESAE 57 (650)
T ss_pred CCchhhhhhhhccceeeccC-CCCHHHhhccccceeehhhhc---------------------CCcccccccc-cccccc
Confidence 8999999999999973 333 357889999999999865432 3788888888 999999
Q ss_pred HHHHHHHHHcCCCCCCceeccCCCCCCcceEEEeecCCCCCCeEEEEEEeccccCCCCccCHHHHHHHHHhcCCCCCcEE
Q 007872 80 GIAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLV 159 (586)
Q Consensus 80 GiARel~a~~g~~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~~s~~~lq~kL~~~~~r~r~~V 159 (586)
|+|+ ..+++...- .+... .....+.+.......+|+.+.++++++.+. ++++++++|+++|+.+||++..+
T Consensus 58 ~~~~--~~~v~ie~~-~~~~~----~~~~~~i~~v~~~~~sP~~~~~~l~~~gir--~in~lVDitnyv~l~~Gqp~h~~ 128 (650)
T COG0072 58 GLAR--KIFLEIEAG-KYACP----RYAGRVIKGVKVNAPSPLWLQARLRGVGIR--PINNLVDITNYVHLELGQPRHAF 128 (650)
T ss_pred cccc--eeEeecccc-cccCC----ccceEEEECcccCCCCCHHHHHHHHhcCCC--cHHHHHHHHHHHHHHhCCcchHh
Confidence 9999 444444211 12221 123345555444578999999999999998 68899999999999999999999
Q ss_pred EeeehhhcccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccc--cccccccCCCcceEEEeCCCCeeeecC
Q 007872 160 AIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLK--KYLHIIENSPLYPVLYDQNRTVLSLPP 237 (586)
Q Consensus 160 dIgn~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~--~y~~i~~~~~~~~VI~D~~~~~lslag 237 (586)
|++.||. +.|+.|.+..+ ++.|.++++.+++++..+++ +|.++. .|.+.+.+++.++.+.|..+.+.+++|
T Consensus 129 d~~~~~~---~i~vr~a~~~e-~~~~ld~~~~~l~~~~~vi~---d~~~~~alagv~g~~~s~~~~~t~d~~~E~a~f~P 201 (650)
T COG0072 129 DIGKIDG---KIPVRYAKEGE-TLVFLDGKERELLTGDLVIA---DHEKGLALAGVMGGADSEVDPNTTDVLLEVASFPP 201 (650)
T ss_pred hhhhccC---ceEEEEccCCC-ceEecCCcceeeCCCCEEEE---eCCCceeeeeeeeccccCCCccceeeeeeeEecCh
Confidence 9999998 55677766654 46777777777888888887 778877 999999999999999999999999999
Q ss_pred cccCCcc-eeccCCceEEE
Q 007872 238 IINGAHS-AITLKTKNVFI 255 (586)
Q Consensus 238 Iigg~~s-~It~~T~nI~i 255 (586)
++++..| +++..|++.++
T Consensus 202 i~i~~~~r~l~~~T~~~~r 220 (650)
T COG0072 202 IIISKTSRRLGLDTEASFR 220 (650)
T ss_pred HHHHhhcccccCCcceeEE
Confidence 9999999 99999999885
No 29
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=99.10 E-value=2.6e-09 Score=114.50 Aligned_cols=186 Identities=15% Similarity=0.096 Sum_probs=137.1
Q ss_pred CCChHHHHHHHHHHHHHHC--------CceEEecc-cccChHHHHHHcCCCCCC-----CCce-eeCCccCCchhhcccc
Q 007872 391 KPLALNEFSDLMRLEIAMN--------GFTEVLTW-ILCSSKEISTMLNRQTDE-----STAV-VGNPRTSDFEVVRTTL 455 (586)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~--------Gf~Ev~t~-sl~s~~~~~~~l~~~~~~-----~~~v-l~NP~s~e~~~lR~sL 455 (586)
..||+..+.+.|.+.+.++ ||+=.-.+ ..++...+|+.|+.+.+. .+.. + | +-..|||.-
T Consensus 40 ~~HPl~~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi-~----~~~lLRTHT 114 (460)
T TIGR00469 40 EDHPLGIIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYI-N----EQHLLRAHT 114 (460)
T ss_pred CCCcHHHHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEe-c----CCceeCCCC
Confidence 7899999999999999998 87444431 368888899999877652 2345 6 3 457999999
Q ss_pred hHHHHHHHHhccCCCCCee--EEEeCcEeecCCCcccccccccEEEEEEcCC----------------------------
Q 007872 456 MPGILKTIGHNKDHPKPIK--IYEVGDVVLLDEKKDVGASCRRRLAALYCGA---------------------------- 505 (586)
Q Consensus 456 lpgLL~~l~~N~~~~~~~~--lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~---------------------------- 505 (586)
-+...++++.+.....|++ ++-.|+||++|.-+.++....+++-++....
T Consensus 115 Sa~q~~~~~~~~~~~~~~~~~~i~~G~VYRrD~iDatH~p~FHQ~EG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (460)
T TIGR00469 115 SAHELECFQGGLDDSDNIKSGFLISADVYRRDEIDKTHYPVFHQADGAAIRKRTKADLFEKEPGYIEKFEEDIRGTEADL 194 (460)
T ss_pred cHHHHHHHHhccccCCCcceeeEeecceeeCCCCccccCccceeeEEEEEeccccccccccccchhhhhhhhhhhccccc
Confidence 9999999998765434555 9999999999875444444444444322111
Q ss_pred ---C--CC-----------------H---------HHHHHHHHHHHHHh-CCCCC--------CCCCCccEEEEecCCCC
Q 007872 506 ---N--SG-----------------F---------ELIHCLVDRIMEVI-GTPFV--------PVGDDTGYYIQRSDEPE 545 (586)
Q Consensus 506 ---~--~~-----------------f---------~~ikg~le~ll~~l-gi~~~--------~~~~~~~~~~~~~~~~~ 545 (586)
. .+ | .++|+.|+.+++.+ |-+.. ...+.....++++..|+
T Consensus 195 ~~~~~~i~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~LK~~L~~~~~~lFg~~~~~~~~~~~~~~~~~~~~r~~ps~fPf 274 (460)
T TIGR00469 195 NKENVKIILDDDSIPLKENNPKQEYASDLAVDLCEHELKHSIEGITKDLFGKKISSMIKNKANNTPKELKVRWIDAYFPF 274 (460)
T ss_pred cccCcceeccCcccccccccchhhhccHHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccccCccceEEEEeccCCC
Confidence 0 01 4 78999999999866 53210 00111236788999999
Q ss_pred ccCCceEEEEECCE--EEEEEEEeCHHHHHHCCCCccc
Q 007872 546 FLPGRQASITHKGK--HVGTFGIVHPEVMSSFEQSLKN 581 (586)
Q Consensus 546 f~pgr~A~I~~~g~--~iG~~GelhP~vl~~~~l~~pv 581 (586)
.+|+..++|.++|+ .||.+|.+||+|+++.|++.++
T Consensus 275 tePs~evdi~~~g~WiEi~gcG~v~p~vl~~~g~~~~~ 312 (460)
T TIGR00469 275 TAPSWEIEIWFKDEWLELCGCGIIRHDILLRAGVHPSE 312 (460)
T ss_pred CCcceEEEEEECCeeEEEeeeccCcHHHHHHcCCCccc
Confidence 99999999999998 8999999999999999998774
No 30
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=5.4e-10 Score=114.32 Aligned_cols=185 Identities=15% Similarity=0.316 Sum_probs=146.2
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCC-----------------C--------------------
Q 007872 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQ-----------------T-------------------- 433 (586)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~-----------------~-------------------- 433 (586)
++||.+....+||+.-..+||.|++|...+.+++.++.++.. .
T Consensus 45 k~Hpl~~TIq~lReAYLr~GF~EmvNPlivde~evykQFGpEA~AVLDRCFYLagLPrPdVGlg~eki~~i~~i~~d~~d 124 (536)
T COG2024 45 KPHPLYETIQRLREAYLRMGFSEMVNPLIVDEEEVYKQFGPEALAVLDRCFYLAGLPRPDVGLGAEKIEQIEEIGIDEPD 124 (536)
T ss_pred CcCcHHHHHHHHHHHHHHhhHHHhcCccccCHHHHHHHhChHHHHHHHHHHHhcCCCCCCcCccHHHHHHHHHhcCCCch
Confidence 899999999999999999999999999999988765543221 0
Q ss_pred ------------------CCCCce--eeC------------------------CccCCchhhcccchHHHHHHHHhccCC
Q 007872 434 ------------------DESTAV--VGN------------------------PRTSDFEVVRTTLMPGILKTIGHNKDH 469 (586)
Q Consensus 434 ------------------~~~~~v--l~N------------------------P~s~e~~~lR~sLlpgLL~~l~~N~~~ 469 (586)
++++.+ |++ |.|. -.+||+++..|..-+++.=..+
T Consensus 125 e~~e~lrevlh~YKKG~idGDdLv~eIa~aL~v~d~~~~~vle~vFPEfk~Lkp~s~-tlTLRSHMTsGWFItLs~i~~r 203 (536)
T COG2024 125 EKVERLREVLHAYKKGEIDGDDLVHEIAEALEVDDGTGLRVLEEVFPEFKDLKPESS-TLTLRSHMTSGWFITLSEILKR 203 (536)
T ss_pred hhHHHHHHHHHHHhcCCCCcchhHHHHHHHhccCcchHHHHHHHhChHHhhcCCCCC-ceehhhhcccceeeeHHHHHhc
Confidence 011111 222 4432 4579999999999999887766
Q ss_pred C-CCeeEEEeCcEeecCCCcc-cccccccEEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecC--CCC
Q 007872 470 P-KPIKIYEVGDVVLLDEKKD-VGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSD--EPE 545 (586)
Q Consensus 470 ~-~~~~lFEiG~V~~~~~~~~-~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~--~~~ 545 (586)
. .|+++|.|-++|++.+.++ +........+|++.+...+..+.|.+.+.||+.+|+.. |.|+|.. ..+
T Consensus 204 ~~~PlklFSIDRCFRREQ~ED~shLmtYhSASCVvvde~vtvD~GKaVAEglL~qfGFe~--------F~FrpDEK~SKY 275 (536)
T COG2024 204 EDPPLKLFSIDRCFRREQREDASHLMTYHSASCVVVDEDVTVDDGKAVAEGLLRQFGFEK--------FRFRPDEKKSKY 275 (536)
T ss_pred cCCCceeeehhHHhhhhhhcchhhhhhhccceEEEEcCcccccccHHHHHHHHHHhCccc--------eeeccccccccc
Confidence 5 5799999999998865432 33445567788889999999999999999999999975 8888864 577
Q ss_pred ccCCceEEEEE-----C--------C-EEEEEEEEeCHHHHHHCCCCcccccc
Q 007872 546 FLPGRQASITH-----K--------G-KHVGTFGIVHPEVMSSFEQSLKNISY 584 (586)
Q Consensus 546 f~pgr~A~I~~-----~--------g-~~iG~~GelhP~vl~~~~l~~pv~~~ 584 (586)
|.||-+.+++. . | ..|..||.-+|-.|..|||++||++|
T Consensus 276 YvP~TQTEVyAyHPkL~gs~~kysdgWiEiATFGlYSP~ALaeY~Id~pVMNL 328 (536)
T COG2024 276 YVPGTQTEVYAYHPKLVGSIEKYSDGWIEIATFGLYSPIALAEYGIDYPVMNL 328 (536)
T ss_pred cCCCccceEEEecccccccccccCCCcEEEEeecccChHHHHHcCCCCceeec
Confidence 99999988875 1 2 26888999999999999999999986
No 31
>COG3382 Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]
Probab=98.67 E-value=1.5e-07 Score=91.89 Aligned_cols=120 Identities=17% Similarity=0.140 Sum_probs=99.2
Q ss_pred cCHHHHHHHHHhc--CCCCCcEEEeee------------hhhcccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhc
Q 007872 139 NSFIDLQDKLHQN--ICRRRTLVAIGT------------HDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYK 204 (586)
Q Consensus 139 ~s~~~lq~kL~~~--~~r~r~~VdIgn------------~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~ 204 (586)
.|-..|.+|.+.. +.++|++||++| ||.|++.||++.+...++ ..|.+|+...++.
T Consensus 82 ~S~EALlrRv~kg~~lp~InpvVD~yNa~Sl~y~vPig~~D~d~~~g~lrL~~a~gg-E~f~~lg~~~~~~--------- 151 (229)
T COG3382 82 PSAEALLRRVLKGNSLPRINPVVDIYNAASLKYAVPIGGYDADKIVGDLRLTLADGG-ETFDTLGAKNEPP--------- 151 (229)
T ss_pred CcHHHHHHHHHcCCCccccchhhhhhhHHHHhhcCCcccccHHHhCCCceEEeccCC-ceeecccCCCCCC---------
Confidence 3678999999864 678999999988 899999999888887766 4899997322221
Q ss_pred cccccccccccccCCCcceEEEeCCCCeeeecCcccCCcceeccCCceEEEEecccC---hhhHHHHHHHHHHHHHHhhc
Q 007872 205 SDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECTATD---LTKAKIVLNTMVTIFSEYCK 281 (586)
Q Consensus 205 ~~~~l~~y~~i~~~~~~~~VI~D~~~~~lslagIigg~~s~It~~T~nI~iE~a~~D---~~~~~~~l~~~~~~~~~~~~ 281 (586)
+ ++.+|.+|++|.++..=|.-.|..|.||++|||+|+=+.+.+ -+.+..|++.++.+|.++++
T Consensus 152 ----~----------~geiv~~Dd~G~~~r~~~~Rds~rT~vt~~Tk~~l~I~e~vp~~~~~~l~~a~~~l~~~l~~~~g 217 (229)
T COG3382 152 ----L----------EGEIVLVDDEGAFCRRWNWRDSVRTMVTESTKNVLLIAEGVPGVEVEDLVEALDSLADLLEKLLG 217 (229)
T ss_pred ----C----------CCcEEEEcCCCCeeeecccccceeeehhhccceEEEEEecCCCccHHHHHHHHHHHHHHHHHhcC
Confidence 1 234899999998899999999999999999999999999754 45678899999999999876
Q ss_pred C
Q 007872 282 R 282 (586)
Q Consensus 282 ~ 282 (586)
+
T Consensus 218 G 218 (229)
T COG3382 218 G 218 (229)
T ss_pred C
Confidence 4
No 32
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=2.7e-07 Score=94.46 Aligned_cols=185 Identities=17% Similarity=0.202 Sum_probs=137.8
Q ss_pred CCCCCCChHHHHHHHHHHHHHHCCceEEecccccChH-HHHHHcCCCC-----CCCCce-eeCCccCC------------
Q 007872 387 PASVKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSK-EISTMLNRQT-----DESTAV-VGNPRTSD------------ 447 (586)
Q Consensus 387 p~~~~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~-~~~~~l~~~~-----~~~~~v-l~NP~s~e------------ 447 (586)
|.....+|..+.+..+|.++..+||.|+-|..++... ++|+.+..+. |..+.. |.+|.+..
T Consensus 206 p~~G~lHPLmKvR~eFRqiF~emGFsEMptn~yVEssFWNFDALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~ 285 (483)
T KOG2784|consen 206 PSSGHLHPLMKVREEFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVKA 285 (483)
T ss_pred CCCCccchHHHHHHHHHHHHHHccccccccccchhhccccchhhcCcccCCccccccceEecChhhcccCCHHHHHHHHH
Confidence 3333899999999999999999999999999887543 2555554332 223567 99998764
Q ss_pred ----------------------chhhcccch---HHHHHHHHhccCCCCCeeEEEeCcEeecCCCcccccccccEEEEEE
Q 007872 448 ----------------------FEVVRTTLM---PGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALY 502 (586)
Q Consensus 448 ----------------------~~~lR~sLl---pgLL~~l~~N~~~~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~ 502 (586)
-.+|||.-. .-+|-.++. +--.|.|+|.|-+||+...=+.++..+.+++-+++
T Consensus 286 vH~~G~ygs~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk--~~f~p~K~FSIDrVFRNEtvDaTHLAEFHQVEGvi 363 (483)
T KOG2784|consen 286 VHEQGGYGSIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAK--KGFKPAKYFSIDRVFRNETVDATHLAEFHQVEGVI 363 (483)
T ss_pred HHhcCCcCCcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHh--CCCCcccccchhhhhhccccchHHHHHHhhhceee
Confidence 356787654 334444442 22247999999999986544446667888999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEE--CC----EEEEEEEEeCHHHHHHCC
Q 007872 503 CGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITH--KG----KHVGTFGIVHPEVMSSFE 576 (586)
Q Consensus 503 ~~~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~--~g----~~iG~~GelhP~vl~~~~ 576 (586)
++...+.-++-|++..++.++|+.. ..++|..+|+-+| +.+|+. .| ..+|--|..||+.+...|
T Consensus 364 ad~gltLgdLig~l~~ff~~lg~tn--------lrfKPaynpYtep--smeif~yh~gl~kwvEvgnSg~frPeml~pMG 433 (483)
T KOG2784|consen 364 ADKGLTLGDLIGILMEFFTKLGATN--------LRFKPAYNPYTEP--SMEIFSYHHGLFKWVEVGNSGMFRPEMLLPMG 433 (483)
T ss_pred ecCCCcHHHHHHHHHHHHhccCCcc--------ccccCCCCCCCCc--eeEEEEeccccceEEEEcCCCCCCHhHhhccC
Confidence 9999999999999999999999864 6778877777666 344443 33 268999999999999999
Q ss_pred CCccccc
Q 007872 577 QSLKNIS 583 (586)
Q Consensus 577 l~~pv~~ 583 (586)
|+..+..
T Consensus 434 Lp~Dv~v 440 (483)
T KOG2784|consen 434 LPMDVVV 440 (483)
T ss_pred CCcccee
Confidence 9887543
No 33
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=98.48 E-value=4.9e-07 Score=73.39 Aligned_cols=70 Identities=21% Similarity=0.386 Sum_probs=61.9
Q ss_pred CCeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhhHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHH
Q 007872 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEG 80 (586)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~G 80 (586)
+|+|+++.+++.+++|.+++.+++.++|..+|++++...+ +-.+++.+|++|+|+++-.=
T Consensus 1 ~~~i~~~~~~i~~llG~~i~~~ei~~~L~~lg~~~~~~~~--------------------~~~~~v~~P~~R~Di~~~~D 60 (71)
T smart00874 1 PRTITLRRERINRLLGLDLSAEEIEEILKRLGFEVEVSGD--------------------DDTLEVTVPSYRFDILIEAD 60 (71)
T ss_pred CcEEEecHHHHHHHHCCCCCHHHHHHHHHHCCCeEEecCC--------------------CCeEEEECCCCccccCcccH
Confidence 6899999999999999999999999999999999964211 11589999999999999999
Q ss_pred HHHHHHHHcC
Q 007872 81 IAQALRVFNK 90 (586)
Q Consensus 81 iARel~a~~g 90 (586)
++-|++-++|
T Consensus 61 liEei~r~~G 70 (71)
T smart00874 61 LIEEVARIYG 70 (71)
T ss_pred HHHHHHHHhC
Confidence 9999988776
No 34
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=97.83 E-value=6.3e-05 Score=60.94 Aligned_cols=67 Identities=16% Similarity=0.362 Sum_probs=56.0
Q ss_pred eEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhhHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHHH
Q 007872 3 TVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIA 82 (586)
Q Consensus 3 ~i~~~~~~l~~~~g~~~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiA 82 (586)
+|.++.+.+.+++|.+++.+++.+.|..+|+.++...++ .+.+.+|+.|+|+..-.=|+
T Consensus 3 ~i~~~~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~~---------------------~~~v~vP~~R~Di~~~~Dli 61 (70)
T PF03484_consen 3 KITLSLDKINKLLGIDISPEEIIKILKRLGFKVEKIDGD---------------------TLEVTVPSYRFDIEHEEDLI 61 (70)
T ss_dssp EEEEEHHHHHHHHTS---HHHHHHHHHHTT-EEEE-CTT---------------------EEEEEEETTSTT-SSHHHHH
T ss_pred EEEecHHHHHHHhCCCCCHHHHHHHHHHCCCEEEECCCC---------------------EEEEEcCCCcCCcCcccHHH
Confidence 689999999999999999999999999999999865432 79999999999999999999
Q ss_pred HHHHHHcC
Q 007872 83 QALRVFNK 90 (586)
Q Consensus 83 Rel~a~~g 90 (586)
-|++-++|
T Consensus 62 EEiaR~yG 69 (70)
T PF03484_consen 62 EEIARIYG 69 (70)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 99988776
No 35
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=97.74 E-value=0.00018 Score=68.69 Aligned_cols=130 Identities=22% Similarity=0.256 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHH-HCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCC---C
Q 007872 396 NEFSDLMRLEIA-MNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH---P 470 (586)
Q Consensus 396 ~~~~~~lr~~l~-~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~---~ 470 (586)
+++.+.+++.+. ..||+|+.+..|.+.+............+..+ +.+.-.++ -+||++.-|++....+..... .
T Consensus 3 ~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~~~-~~L~pt~~~~~~~~~~~~~~~~~~~ 81 (173)
T PF00587_consen 3 NALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRGDEE-YCLRPTSEPGIYSLFKNEIRSSYRD 81 (173)
T ss_dssp HHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETTTEE-EEE-SSSHHHHHHHHHHHEEBHGGG
T ss_pred HHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeeccccc-EEeccccccceeeeecceeeecccc
Confidence 578899999999 99999999999999876433211110013455 76655543 499999999999999887654 4
Q ss_pred CCeeEEEeCcEeecCCCcccc---cccccEEEEEEcCCC----CCHHHHHHHHHHHHHHhCC-C
Q 007872 471 KPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGAN----SGFELIHCLVDRIMEVIGT-P 526 (586)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~~~g---~~~~~~l~~~~~~~~----~~f~~ikg~le~ll~~lgi-~ 526 (586)
.|+++|++|.+|+.+.....| .++..+.-+.+.+.. ..+.++......+++.||+ +
T Consensus 82 LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~~ 145 (173)
T PF00587_consen 82 LPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKLGLEP 145 (173)
T ss_dssp SSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSGC
T ss_pred CCeEEeecccccccccccccccceeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHcCCce
Confidence 799999999999876322222 245555555544443 3588899999999999999 5
No 36
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=97.65 E-value=0.00037 Score=75.84 Aligned_cols=133 Identities=15% Similarity=0.198 Sum_probs=93.6
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCC--CCCCce-eeCCccCCchhhcccchHHHHHHHHhcc
Q 007872 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT--DESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNK 467 (586)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~--~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~ 467 (586)
.....+.+.+.+|+.+...||+|+.|..|...+......+... ..++.+ +.++ +.+.-+||+.+.|++.+.++.|.
T Consensus 17 ~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~-~g~~l~LRpd~T~~~ar~~~~~~ 95 (412)
T PRK00037 17 ESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDK-GGRSLTLRPEGTAPVVRAVIEHK 95 (412)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcC-CCCEEEecCCCcHHHHHHHHhCC
Confidence 3445667889999999999999999999977553212111110 013455 7776 56677999999999999999875
Q ss_pred CCCCCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCH--HHHHHHHHHHHHHhCCC
Q 007872 468 DHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGF--ELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 468 ~~~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f--~~ikg~le~ll~~lgi~ 526 (586)
+ .|+|+|++|+||+.+.......++..++.+=+.|..... .++-.++..+|+.+|++
T Consensus 96 ~--~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~~~~~d~E~i~~~~~~l~~lg~~ 154 (412)
T PRK00037 96 L--QPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEVIALAADILKALGLK 154 (412)
T ss_pred C--CCeEEEEEcCccccCCCCCCcccceEEcCeeeeCCCCcchhHHHHHHHHHHHHHcCCC
Confidence 5 789999999999866443334456666666555544322 34667777888899886
No 37
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=97.61 E-value=0.0011 Score=67.53 Aligned_cols=130 Identities=15% Similarity=0.184 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCC-CCC
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH-PKP 472 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~-~~~ 472 (586)
.+.+.+.+++.+...||.|+.+..|...+..... ......++.+ +..+ +.+.-+||+.+.|++.+.++.|... ..|
T Consensus 5 ~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~-~~~~~~~~~~~~~d~-~g~~l~LRpd~T~~iaR~~a~~~~~~~~p 82 (261)
T cd00773 5 RRYIEDTLREVFERYGYEEIDTPVFEYTELFLRK-SGDEVSKEMYRFKDK-GGRDLALRPDLTAPVARAVAENLLSLPLP 82 (261)
T ss_pred HHHHHHHHHHHHHHcCCEEeeccceeeHHHhccc-ccccccceEEEEECC-CCCEEEeCCCCcHHHHHHHHhcCccCCCC
Confidence 4678899999999999999999999887642211 1111123456 7665 3456799999999999999987653 578
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHH--HHHHHHHHHHHHhCCC
Q 007872 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFE--LIHCLVDRIMEVIGTP 526 (586)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~--~ikg~le~ll~~lgi~ 526 (586)
+|+|++|+||+.+.......++..++++=+.|...-.. ++-.++..+++.+|++
T Consensus 83 ~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~~~~~daE~i~l~~~~l~~lg~~ 138 (261)
T cd00773 83 LKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSDSPLADAEVIALAVEILEALGLK 138 (261)
T ss_pred eEEEEEcCEEecCCCCCCCccceEEeceeeeCCCChHHHHHHHHHHHHHHHHcCCC
Confidence 99999999998665433345666677765555543333 3557777788888875
No 38
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=97.40 E-value=0.0025 Score=69.05 Aligned_cols=135 Identities=17% Similarity=0.223 Sum_probs=94.6
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCC--CCCCce-eeCCccCCchhhcccchHHHHHHHHhcc
Q 007872 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT--DESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNK 467 (586)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~--~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~ 467 (586)
.....+++.+.+++.+...||.|+.+.+|...+......+... ..++.+ +..+ +.+.-+||+.+.+++.+.++.|.
T Consensus 13 ~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~-~g~~l~LRpD~T~~iaR~~~~~~ 91 (397)
T TIGR00442 13 EMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDK-GGRSLTLRPEGTAPVARAVIENK 91 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECC-CCCEEeecCCCcHHHHHHHHhcc
Confidence 3445667899999999999999999999987654222111110 012345 6655 45567899999999999998875
Q ss_pred C-CCCCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHH--HHHHHHHHHHHHhCCC
Q 007872 468 D-HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFE--LIHCLVDRIMEVIGTP 526 (586)
Q Consensus 468 ~-~~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~--~ikg~le~ll~~lgi~ 526 (586)
+ +..|.|+|.+|+||+.+.......++..++++=+.|...... ++-.++..+|..+|++
T Consensus 92 ~~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~~~~~d~E~i~l~~e~l~~lg~~ 153 (397)
T TIGR00442 92 LLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEIIALAAEILKELGIK 153 (397)
T ss_pred cccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 4 356899999999998664433345666677765566544333 5567778889999985
No 39
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.38 E-value=0.0027 Score=68.66 Aligned_cols=131 Identities=13% Similarity=0.107 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHH-cCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTM-LNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPK 471 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~-l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~ 471 (586)
..+.+.+++++.+...||.|+.|.+|-..+ .+.. .+... ....+ +.++.+.+.-.||+=+.+++.+.++.|.+...
T Consensus 23 ~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e-~~~~~~g~~~-~~~~y~f~D~~~g~~l~LRpD~T~~iaR~~a~~~~~~~ 100 (392)
T PRK12421 23 KIERLRRRLLDLFASRGYQLVMPPLIEYLE-SLLTGAGQDL-KLQTFKLIDQLSGRLMGVRADITPQVARIDAHLLNREG 100 (392)
T ss_pred HHHHHHHHHHHHHHHcCCEEeeCcchhhHH-HHhccCCccc-hhceEEEEcCCCCcEEEECCcCCHHHHHHHHhhcCCCC
Confidence 345678999999999999999999995544 2322 11111 12456 88876666678999999999999888765566
Q ss_pred CeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHH--HHHHHHHHHHHHhCCC
Q 007872 472 PIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFE--LIHCLVDRIMEVIGTP 526 (586)
Q Consensus 472 ~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~--~ikg~le~ll~~lgi~ 526 (586)
|+|+|-+|+||+.+.......++..++++=+.|...-.. ++-.++...|+.+|++
T Consensus 101 p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~lgi~ 157 (392)
T PRK12421 101 VARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNAGVP 157 (392)
T ss_pred ceEEEEeeeEEEcCCCcCCCcCccceeceEEeCCCCchhHHHHHHHHHHHHHHcCCC
Confidence 899999999997544322334667788776666533222 4556666788899986
No 40
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=97.30 E-value=0.0038 Score=65.24 Aligned_cols=129 Identities=16% Similarity=0.169 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCCe
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~ 473 (586)
.+.+.+++++.+...||.|+.+.+|...+......+. +.++.+ +..+ +.+.-.||+-+.+++.+.++.|.+...|.
T Consensus 13 ~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~--~~~~~~~~~D~-~G~~l~LR~D~T~~iaR~~a~~~~~~~~~ 89 (311)
T PF13393_consen 13 RERIESKLREVFERHGYEEIETPLLEYYELFLDKSGE--DSDNMYRFLDR-SGRVLALRPDLTVPIARYVARNLNLPRPK 89 (311)
T ss_dssp HHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSST--TGGCSEEEECT-TSSEEEE-SSSHHHHHHHHHHCCGSSSSE
T ss_pred HHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhcccc--chhhhEEEEec-CCcEeccCCCCcHHHHHHHHHhcCcCCCc
Confidence 4567899999999999999999999877653333221 224667 8887 88888999999999999999997656789
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEcCCCCCH--HHHHHHHHHHHH-HhCCC
Q 007872 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGF--ELIHCLVDRIME-VIGTP 526 (586)
Q Consensus 474 ~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f--~~ikg~le~ll~-~lgi~ 526 (586)
|+|.+|.||+.........++..++++=+.|...-. .++-.++..+|. .+++.
T Consensus 90 r~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~~~l~~~ 145 (311)
T PF13393_consen 90 RYYYIGPVFRYERPGKGRPREFYQCGFEIIGSSSLEADAEVIKLADEILDRELGLE 145 (311)
T ss_dssp EEEEEEEEEEEETTTTTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred eEEEEcceeeccccCCCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999876443334567778877666654222 145566666775 88875
No 41
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=97.26 E-value=0.0027 Score=63.25 Aligned_cols=131 Identities=12% Similarity=0.105 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcC-CCCCCCCce-eeCCcc---CCchhhcccchHHHHHHHHhccCC
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLN-RQTDESTAV-VGNPRT---SDFEVVRTTLMPGILKTIGHNKDH 469 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~-~~~~~~~~v-l~NP~s---~e~~~lR~sLlpgLL~~l~~N~~~ 469 (586)
.+.+.+.+++.+...||+|+.+..|...+.. .... .....++.. +..+-. .+.-+||+...+++....+.+...
T Consensus 5 ~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~~~ 83 (235)
T cd00670 5 WRALERFLDDRMAEYGYQEILFPFLAPTVLF-FKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEILS 83 (235)
T ss_pred HHHHHHHHHHHHHHcCCEEEECCeEcCHHHH-hhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccCcc
Confidence 4567889999999999999999999988753 3222 111112334 655431 345689999999999998887653
Q ss_pred --CCCeeEEEeCcEeecCCCccc---ccccccEEEEEEcCCC----CCHHHHHHHHHHHHHHhCCC
Q 007872 470 --PKPIKIYEVGDVVLLDEKKDV---GASCRRRLAALYCGAN----SGFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 470 --~~~~~lFEiG~V~~~~~~~~~---g~~~~~~l~~~~~~~~----~~f~~ikg~le~ll~~lgi~ 526 (586)
..|++++++|+||+.+..... ..++..+..+-+.|.. ..+.++..+...++..||++
T Consensus 84 ~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lgl~ 149 (235)
T cd00670 84 YRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGLP 149 (235)
T ss_pred chhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 569999999999987654311 2245555555454443 23678889999999999986
No 42
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=97.10 E-value=0.0079 Score=65.96 Aligned_cols=131 Identities=14% Similarity=0.140 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCC--CCCce-eeCCccCCchhhcccchHHHHHHHHhccC--C
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD--ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--H 469 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~--~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~--~ 469 (586)
.+.+.+.+++.+...||+|+.|.+|-..+......+...+ .++.. +..+ +.+.-.||+-+.|++.+..+.|.. +
T Consensus 21 ~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~-~g~~l~LRpd~T~~iaR~~~~~~~~~~ 99 (430)
T CHL00201 21 WQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDR-SNRDITLRPEGTAGIVRAFIENKMDYH 99 (430)
T ss_pred HHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcC-CCCEEEeCCCCcHHHHHHHHHcccccc
Confidence 4567889999999999999999999877642222121111 13445 6554 445568999999999999777654 2
Q ss_pred CCCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCH--HHHHHHHHHHHHHhCCC
Q 007872 470 PKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGF--ELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f--~~ikg~le~ll~~lgi~ 526 (586)
..|+|+|++|.||+.+.......++..++++=+-|...-. .++-.++...|..+|++
T Consensus 100 ~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~~lGl~ 158 (430)
T CHL00201 100 SNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSIDARADTEVIHLAMQIFNELQVK 158 (430)
T ss_pred CCCeEEEEEcceecCCCCcCCccceeEEeceEEECCCChhhHHHHHHHHHHHHHHcCCC
Confidence 4579999999999866543334466666666444443222 35667778888999986
No 43
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.99 E-value=0.0095 Score=64.50 Aligned_cols=131 Identities=13% Similarity=0.084 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCC-CCC
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH-PKP 472 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~-~~~ 472 (586)
.+.+.+++++.+...||.|+.|.+|-..+......+.. ..++.+ +..+.+...-.||+-+.+++.+.++.|.++ ..|
T Consensus 20 ~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~-~~~~~~~f~d~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~p 98 (391)
T PRK12292 20 IEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAI-LDLRTFKLVDQLSGRTLGLRPDMTAQIARIAATRLANRPGP 98 (391)
T ss_pred HHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCcc-chhhhEEEeecCCCCEEEECCCCcHHHHHHHHHhccCCCCC
Confidence 44678899999999999999999997654321111111 113455 666545566789999999999999987653 568
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCH--HHHHHHHHHHHHHhCCC
Q 007872 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGF--ELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f--~~ikg~le~ll~~lgi~ 526 (586)
+|+|.+|.||+.+.......++..++++=+-|...-. .++-.++..+|..+|++
T Consensus 99 ~r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~lgl~ 154 (391)
T PRK12292 99 LRLCYAGNVFRAQERGLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKALGLP 154 (391)
T ss_pred eEEEeeceeeecCCCcCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHcCCC
Confidence 9999999999866543334567777776555543322 25556777788888875
No 44
>PLN02530 histidine-tRNA ligase
Probab=96.94 E-value=0.007 Score=67.41 Aligned_cols=129 Identities=13% Similarity=0.112 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHH-cCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCC-C
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTM-LNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH-P 470 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~-l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~-~ 470 (586)
..+.+.+.+++.+...||+|+.|..|-..+. +.. .+.. ..++.+ +..+ +.+.=+||+-+.|++.+.++.|.+. .
T Consensus 86 ~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el-~~~~~g~~-~~~~~y~f~D~-~g~~l~LRpD~T~~iaR~~~~~~~~~~ 162 (487)
T PLN02530 86 LRNWLFDHFREVSRLFGFEEVDAPVLESEEL-YIRKAGEE-ITDQLYNFEDK-GGRRVALRPELTPSLARLVLQKGKSLS 162 (487)
T ss_pred HHHHHHHHHHHHHHHcCCEeccccccchHHH-hccccCcc-cccceEEEECC-CCCEEecCCCCcHHHHHHHHhcccccC
Confidence 3456789999999999999999999987553 322 1111 113455 6554 4455689999999999999988653 5
Q ss_pred CCeeEEEeCcEeecCCCcccccccccEEEEEEcCC---CCCHHHHHHHHHHHHHHhCCC
Q 007872 471 KPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGA---NSGFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~---~~~f~~ikg~le~ll~~lgi~ 526 (586)
.|+|+|.+|+||+.+.......++..++++=+-|. .++. |+-.++..+|..+|++
T Consensus 163 ~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEiiG~~~~~aDa-Evi~l~~~~l~~lgl~ 220 (487)
T PLN02530 163 LPLKWFAIGQCWRYERMTRGRRREHYQWNMDIIGVPGVEAEA-ELLAAIVTFFKRVGIT 220 (487)
T ss_pred CCeEEEEEcCEEcCcCCCCCCccceEEcCeeEeCCCCcchhH-HHHHHHHHHHHHcCCC
Confidence 78999999999976543333346666666544443 2344 4556666788899985
No 45
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=96.86 E-value=0.015 Score=61.11 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccC-CCCC
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD-HPKP 472 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~-~~~~ 472 (586)
.+.+.+.+++.+...||.|+.|.+|-..+......+ . ..++.+ +..+- .+.-+||+-+.+++.+.++.+.+ ...|
T Consensus 11 ~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~-~-~~~~~~~~~d~~-g~~l~LRpD~T~~iaR~~~~~~~~~~~p 87 (314)
T TIGR00443 11 KEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG-I-LNEDLFKLFDSL-GRVLGLRPDMTTPIARAVSTRLRDRPLP 87 (314)
T ss_pred HHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC-c-chhceEEEECCC-CCEEeecCcCcHHHHHHHHHhcccCCCC
Confidence 456788999999999999999999887654322211 1 123455 66653 45668999999999999888765 3468
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEcCCC---CCHHHHHHHHHHHHHHhCCC
Q 007872 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGAN---SGFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~---~~f~~ikg~le~ll~~lgi~ 526 (586)
+|+|.+|.||+.+.......++..++++=+-|.. ++. ++-.++..++..+|++
T Consensus 88 ~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~~~~ada-Evi~l~~~~l~~lg~~ 143 (314)
T TIGR00443 88 LRLCYAGNVFRTNESGAGRSREFTQAGVELIGAGGPAADA-EVIALLIEALKALGLK 143 (314)
T ss_pred eEEEEeceEeecCCCcCCCcccccccceEEeCCCCchhHH-HHHHHHHHHHHHcCCC
Confidence 9999999999876543334566667666444432 333 4556666777888875
No 46
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=96.81 E-value=0.014 Score=63.94 Aligned_cols=131 Identities=13% Similarity=0.043 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCC-CCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPK 471 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~-~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~ 471 (586)
..+.+.+++++.+...||.|+.|..|-..+......+...+ .++.+ +..+ +...=+||+-+.+++.+.++.|.+...
T Consensus 20 ~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~-~g~~l~LRpD~T~~iaR~va~~~~~~~ 98 (423)
T PRK12420 20 LRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQ-GKRDLALRYDLTIPFAKVVAMNPNIRL 98 (423)
T ss_pred HHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecC-CCceecccccccHHHHHHHHhCcCCCC
Confidence 34567889999999999999999999776532111111111 13455 7776 445568999999999999999865556
Q ss_pred CeeEEEeCcEeecCCCcccccccccEEEEEEcCC---CCCHHHHHHHHHHHHHHhCCC
Q 007872 472 PIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGA---NSGFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 472 ~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~---~~~f~~ikg~le~ll~~lgi~ 526 (586)
|+|+|.+|+||+.+.......++..++++=+-|. .++ .++-.++...|+.+|++
T Consensus 99 p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~~~~ad-aEvi~la~~~l~~lg~~ 155 (423)
T PRK12420 99 PFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAE-AELMSMAFELFRRLNLE 155 (423)
T ss_pred CeeEEEEcceECCCCCCCCccceeEECCeeeECCCCCccc-HHHHHHHHHHHHHCCCC
Confidence 8999999999986543323345666666644443 233 34556666788888875
No 47
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.69 E-value=0.015 Score=60.05 Aligned_cols=120 Identities=13% Similarity=0.165 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccC-CCC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD-HPK 471 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~-~~~ 471 (586)
..+.+++++++.+...||+|+.|.+|-.-+. +... ..++.+ +..+ +.+.-+||+=+.+++.+.++.|.+ ...
T Consensus 21 ~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~----~~~~-~~~~~y~~~D~-~g~~l~LRpD~T~~iaR~~a~~~~~~~~ 94 (281)
T PRK12293 21 LKREIENVASEILYENGFEEIVTPFFSYHQH----QSIA-DEKELIRFSDE-KNHQISLRADSTLDVVRIVTKRLGRSTE 94 (281)
T ss_pred HHHHHHHHHHHHHHHcCCeEeeccceeehhh----hccc-chhceEEEECC-CCCEEEECCcCCHHHHHHHHHhcccCCC
Confidence 3456788899999999999999999964332 2111 123455 7666 566779999999999999988764 456
Q ss_pred CeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHhCCC
Q 007872 472 PIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 472 ~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~lgi~ 526 (586)
|.|+|-+|+||+.. .++..++++=+-|... ..++-.++...|+.+|++
T Consensus 95 p~r~~Y~g~vfR~~------~rEf~Q~GvEliG~~~-~~Evi~la~~~l~~lgl~ 142 (281)
T PRK12293 95 HKKWFYIQPVFRYP------SNEIYQIGAELIGEED-LSEILNIAAEIFEELELE 142 (281)
T ss_pred ceeEEEeccEEecC------CCcccccCeEeeCCCC-HHHHHHHHHHHHHHcCCC
Confidence 89999999999743 1566677665556543 468888888899999986
No 48
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=96.67 E-value=0.028 Score=57.18 Aligned_cols=133 Identities=15% Similarity=0.172 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccC--CC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HP 470 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~--~~ 470 (586)
-.+++.+.+++.+...||+|+.+..|.+.+........+.-.++.. +.+.-.+ .-.||++.-+.+-..++.... +.
T Consensus 33 l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~~~~-~l~LrPt~e~~~t~~~~~~i~s~~~ 111 (255)
T cd00779 33 VLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRHGK-EFLLGPTHEEVITDLVANEIKSYKQ 111 (255)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecCCCC-eEEEecCCcHHHHHHHHhccccHhh
Confidence 3556788899999999999999999998775332211111113344 6543323 347899865555555554332 35
Q ss_pred CCeeEEEeCcEeecCCCcccc---cccccEEEEEEcCCC-----CCHHHHHHHHHHHHHHhCCCC
Q 007872 471 KPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGAN-----SGFELIHCLVDRIMEVIGTPF 527 (586)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~~~g---~~~~~~l~~~~~~~~-----~~f~~ikg~le~ll~~lgi~~ 527 (586)
.|+|+|++|.||+.+.....| .++..+..+-..+.. ..+.++..+...+++.||+++
T Consensus 112 LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~~~~~il~~Lgl~~ 176 (255)
T cd00779 112 LPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKMYQAYSRIFKRLGLPF 176 (255)
T ss_pred CCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHHHHHHHHHHHHcCCcE
Confidence 799999999999866322222 233333333222321 234577788899999999973
No 49
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=96.51 E-value=0.053 Score=58.35 Aligned_cols=127 Identities=11% Similarity=0.035 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP 472 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~ 472 (586)
....+.+++++.+...||.|+.|.+|-..+......+.. ..++.+ +..+ +...-+||+-+.+++.+..+.| +...|
T Consensus 6 ~~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~-~~~~~~~f~D~-~G~~l~LRpD~T~piaR~~~~~-~~~~p 82 (373)
T PRK12295 6 ASAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGED-IRRRIFVTSDE-NGEELCLRPDFTIPVCRRHIAT-AGGEP 82 (373)
T ss_pred hHHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCch-hhcceEEEECC-CCCEEeeCCCCcHHHHHHHHHc-CCCCC
Confidence 455788999999999999999999997765322211111 112345 6666 4456789999999999987776 44568
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEcCCCCC---HHHHHHHHHHHHHHhCCC
Q 007872 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSG---FELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~---f~~ikg~le~ll~~lgi~ 526 (586)
.|+|-+|+||+.+. ...++..++++=+-|...+ =.|+-.++...|..+|+.
T Consensus 83 ~R~~Y~g~VfR~~~---gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~lgl~ 136 (373)
T PRK12295 83 ARYAYLGEVFRQRR---DRASEFLQAGIESFGRADPAAADAEVLALALEALAALGPG 136 (373)
T ss_pred eEEEEEccEEECCC---CCCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHcCCC
Confidence 99999999998651 2356777777755564221 124556666678888875
No 50
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=96.41 E-value=0.075 Score=55.37 Aligned_cols=131 Identities=16% Similarity=0.168 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCC-CCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccC--C
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNR-QTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--H 469 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~-~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~--~ 469 (586)
-.+.+.+.+++.+...||+|+.|..|...+.... .+. +...++.. +.. ..+.-+||++-.|++....+.+.. +
T Consensus 32 l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~~~--~~~~l~LRP~~~~~~~~~~~~~~~s~~ 108 (298)
T cd00771 32 IRNELEDFLRELQRKRGYQEVETPIIYNKELWET-SGHWDHYRENMFPFEE--EDEEYGLKPMNCPGHCLIFKSKPRSYR 108 (298)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhh-CCCccccccCceEecc--CCceEEEcccCCHHHHHHHHhhccchh
Confidence 3456788899999999999999999999875332 221 11112344 521 223458999999999888877543 3
Q ss_pred CCCeeEEEeCcEeecCCCcc-cc---cccccEEEEE-EcCCCCC---HHHHHHHHHHHHHHhCCCC
Q 007872 470 PKPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAAL-YCGANSG---FELIHCLVDRIMEVIGTPF 527 (586)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~-~g---~~~~~~l~~~-~~~~~~~---f~~ikg~le~ll~~lgi~~ 527 (586)
..|+|++++|.||+.+.+.. .| .++..+..+- ++..... +.++-.++..+++.||+..
T Consensus 109 ~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~l~~~~~~l~~lgl~~ 174 (298)
T cd00771 109 DLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDFGFFD 174 (298)
T ss_pred hCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHHHHHHHHHHHHcCCCc
Confidence 57999999999998765432 11 2344343332 2222222 3457788888999998853
No 51
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=96.29 E-value=0.085 Score=59.97 Aligned_cols=132 Identities=16% Similarity=0.163 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCC-CCCce-eeCCccCCchhhcccchHHHHHHHHhccC--C
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--H 469 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~-~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~--~ 469 (586)
-.+++.+.+|+.|...||+|+.+..|...+. +..-+.... .++.. +.....+ .-+||++--+.+...++.... +
T Consensus 49 ~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l-~~~sg~~~~~~~emf~~~d~~~~-~l~LrPt~e~~~~~~~~~~~~s~~ 126 (565)
T PRK09194 49 VLRKIENIVREEMNKIGAQEVLMPALQPAEL-WQESGRWEEYGPELLRLKDRHGR-DFVLGPTHEEVITDLVRNEIKSYK 126 (565)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECcccCcHHH-HhhcCCccccchhceEEecCCCC-EEEECCCChHHHHHHHHhhhhhcc
Confidence 4567889999999999999999999988764 332221111 13445 6654433 347999776666666655543 3
Q ss_pred CCCeeEEEeCcEeecCCCcccc---cccccEEEEEEcCCC-----CCHHHHHHHHHHHHHHhCCCC
Q 007872 470 PKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGAN-----SGFELIHCLVDRIMEVIGTPF 527 (586)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~~g---~~~~~~l~~~~~~~~-----~~f~~ikg~le~ll~~lgi~~ 527 (586)
..|+|+|++|.+|+.+.....| .++..+..+-..+.. ..+.++......+|+.||+++
T Consensus 127 ~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~~ 192 (565)
T PRK09194 127 QLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRLGLDF 192 (565)
T ss_pred cCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 4699999999999865322222 355555444333431 235567777799999999974
No 52
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=96.22 E-value=0.11 Score=53.12 Aligned_cols=134 Identities=11% Similarity=0.067 Sum_probs=86.3
Q ss_pred ChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCC-C-CCce-eeCCcc---CCchhhcccchHHHHHHHHhc
Q 007872 393 LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-E-STAV-VGNPRT---SDFEVVRTTLMPGILKTIGHN 466 (586)
Q Consensus 393 ~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~-~-~~~v-l~NP~s---~e~~~lR~sLlpgLL~~l~~N 466 (586)
.-.+++.+.+++.+...||+|+.+..|.+.+.. ...+...+ . ++.. +...-. .+.-+||++.-+.+....+.+
T Consensus 33 ~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~-~~~g~~~~~~~~e~~~~~~~~~~~~~~~l~LrPt~e~~~~~~~~~~ 111 (264)
T cd00772 33 AILDKIENVLDKMFKEHGAQNALFPFFILASFL-EKEAEHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEIAAKF 111 (264)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEECCeeccHHHH-hhcCCcccccCccceEEEeCCCCccCceEEECCCCCHHHHHHHHhh
Confidence 346678899999999999999999999998753 33222111 1 1222 321111 133489999999999888777
Q ss_pred cC--CCCCeeEEEeCcEeecCCCcccc---cccccEEEEEEcC--C---CCCHHHHHHHHHHHHHHhC-CCC
Q 007872 467 KD--HPKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCG--A---NSGFELIHCLVDRIMEVIG-TPF 527 (586)
Q Consensus 467 ~~--~~~~~~lFEiG~V~~~~~~~~~g---~~~~~~l~~~~~~--~---~~~f~~ikg~le~ll~~lg-i~~ 527 (586)
+. +..|++++++|.+|+.+.....| .++....-+-..+ . ...+..+....+.++..|| +++
T Consensus 112 i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~~~i~~~l~~lp~ 183 (264)
T cd00772 112 IKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYAEIARDLAAIDF 183 (264)
T ss_pred hhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHHHHHHHhcCCccE
Confidence 64 35799999999999876432233 2333333322222 1 1235556677799999999 763
No 53
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=96.13 E-value=0.067 Score=60.66 Aligned_cols=130 Identities=15% Similarity=0.160 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCC-CCCce-eeCCccCCchhhccc----chHHHHHHHHhcc
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRTT----LMPGILKTIGHNK 467 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~-~~~~v-l~NP~s~e~~~lR~s----LlpgLL~~l~~N~ 467 (586)
-.+++.+.+|+.|...||+|+.+..|.+.+ .++.-++... +++.. +...... .=+||++ +.+-+-..+..
T Consensus 49 v~~~I~~~i~~~~~~~G~~ei~~P~l~~~e-l~~~sg~~~~~~~emf~~~dr~~~-~l~LrPT~Ee~~t~~~~~~i~s-- 124 (568)
T TIGR00409 49 VLKKVENIVREEMNKDGAIEVLLPALQPAE-LWQESGRWDTYGPELLRLKDRKGR-EFVLGPTHEEVITDLARNEIKS-- 124 (568)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccchHH-HHhhcCCCCccchhcEEEecCCCC-EEEEcCCCcHHHHHHHHHHHhh--
Confidence 456789999999999999999999999855 3433222111 23445 6654433 3489997 44322223332
Q ss_pred CCCCCeeEEEeCcEeecCCCcccc---cccccEEEEEEcCCC-----CCHHHHHHHHHHHHHHhCCCC
Q 007872 468 DHPKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGAN-----SGFELIHCLVDRIMEVIGTPF 527 (586)
Q Consensus 468 ~~~~~~~lFEiG~V~~~~~~~~~g---~~~~~~l~~~~~~~~-----~~f~~ikg~le~ll~~lgi~~ 527 (586)
.+..|+++|.+|.+|+.+.....| .++..+..+-..+.. ..+..+......+|+.||+++
T Consensus 125 yr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~LgL~~ 192 (568)
T TIGR00409 125 YKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRLGLDF 192 (568)
T ss_pred ccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 245799999999999765221222 345444443333332 234556677799999999974
No 54
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=96.13 E-value=0.039 Score=62.83 Aligned_cols=132 Identities=14% Similarity=0.081 Sum_probs=89.5
Q ss_pred ChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCC-CCCCCce-eeCCccCCchhhcccchHHHHHHHHhccC--
Q 007872 393 LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQ-TDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD-- 468 (586)
Q Consensus 393 ~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~-~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~-- 468 (586)
...+.+.+.+++.+...||+|+.|..|.+.+. +..-+.. ...++.. +... ..+.-+|||.-.|+.....+.+.+
T Consensus 207 ~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l-~~~sg~~~~~~~~my~~~d~-~~~~~~LRP~~~~~~~~~~~~~~~s~ 284 (575)
T PRK12305 207 IIRREIEDYLRKEHLKRGYEFVYTPHIGKSDL-WKTSGHLDNYKENMFPPMEI-DEEEYYLKPMNCPGHILIYKSRLRSY 284 (575)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccCCHHH-HhhcCCcccchhhccccccc-CCceEEEecCCCHHHHHHHhcccCCh
Confidence 34567889999999999999999999999875 3322211 1112333 4222 345568999999999888887764
Q ss_pred CCCCeeEEEeCcEeecCCCcc-cc---cccccEEEEEEcCC----CCCHHHHHHHHHHHHHHhCCC
Q 007872 469 HPKPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAALYCGA----NSGFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~~~~-~g---~~~~~~l~~~~~~~----~~~f~~ikg~le~ll~~lgi~ 526 (586)
+..|+|+|++|.||+.+.+.. .| .++..+..+=+-+. ...+.++..++..++..||++
T Consensus 285 ~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~~~~~~e~~e~i~l~~~~~~~lgl~ 350 (575)
T PRK12305 285 RDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQIEDEILKVLDFVLELLKDFGFK 350 (575)
T ss_pred hhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 246999999999998665421 12 24444444333222 123578888999999999987
No 55
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=96.06 E-value=0.038 Score=57.58 Aligned_cols=130 Identities=11% Similarity=0.078 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccC--CC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HP 470 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~--~~ 470 (586)
-.+++.+.+++.+...||+|+.+..|.+.+........+...++.. +.+ +.-+||++--+.+....+.... +.
T Consensus 54 l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~~----~~~~L~pt~e~~~~~l~~~~~~s~~~ 129 (297)
T cd00770 54 LERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVEG----EDLYLIATAEVPLAALHRDEILEEEE 129 (297)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEecC----CCEEEeecCCHHHHHHHhcccCCHhh
Confidence 3456888899999999999999999999876433222221123344 654 3458999999999877765433 34
Q ss_pred CCeeEEEeCcEeecCCCc----ccc---cccccEEEE-EEcCC---CCCHHHHHHHHHHHHHHhCCCC
Q 007872 471 KPIKIYEVGDVVLLDEKK----DVG---ASCRRRLAA-LYCGA---NSGFELIHCLVDRIMEVIGTPF 527 (586)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~----~~g---~~~~~~l~~-~~~~~---~~~f~~ikg~le~ll~~lgi~~ 527 (586)
.|+++|++|.+|+.+... ..| .++..+.-+ .++.. ...|.++....+.+++.||+++
T Consensus 130 LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~e~~~~~~~~~l~~~~~i~~~lgl~~ 197 (297)
T cd00770 130 LPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEESWEELEELISNAEEILQELGLPY 197 (297)
T ss_pred CCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECchHHHHHHHHHHHHHHHHHHHcCCcE
Confidence 699999999999755331 122 123222222 22322 2347788899999999999984
No 56
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=96.03 E-value=0.054 Score=62.45 Aligned_cols=131 Identities=12% Similarity=0.110 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCC-CCCce-eeCCccCCchhhcccchHHHHHHHHhccCC--
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH-- 469 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~-~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~-- 469 (586)
-.+.+.+.+++.+...||+|+.|..|.+.+. +...+.... .++.. +.. .+.+.-+|||...|+.....+.+.+.
T Consensus 272 ~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l-~~~~g~~~~~~~~my~~~d-~~~~~~~LRP~~~~~~~r~~~~~~~s~~ 349 (638)
T PRK00413 272 IRRELERYIRRKLRKAGYQEVKTPQILDREL-WETSGHWDHYRENMFPTTE-SDGEEYALKPMNCPGHVQIYKQGLRSYR 349 (638)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeCCHHH-HHhcCChhhhhhccceeec-CCCcEEEEecCCcHHHHHHHhCcCCChh
Confidence 4567889999999999999999999999875 332221110 12333 432 24455689999999999999888653
Q ss_pred CCCeeEEEeCcEeecCCCcc-cc---cccccEEEEEEcCCC----CCHHHHHHHHHHHHHHhCCC
Q 007872 470 PKPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAALYCGAN----SGFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~-~g---~~~~~~l~~~~~~~~----~~f~~ikg~le~ll~~lgi~ 526 (586)
..|+|+|++|.||+.+.+.. .| .++..+..+=+-|.. .++.++-.+...++..||++
T Consensus 350 ~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e~~eii~l~~~~~~~lg~~ 414 (638)
T PRK00413 350 DLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKKVIDLILDVYKDFGFE 414 (638)
T ss_pred hCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 46999999999998665421 12 245555554333332 24577888889999999995
No 57
>PLN02972 Histidyl-tRNA synthetase
Probab=96.03 E-value=0.097 Score=60.63 Aligned_cols=126 Identities=11% Similarity=0.080 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCCe
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~ 473 (586)
.+.+.+.+++.+...||.|+.|.+|-..+......+ .+.+..+ +..+ +.+.-.||+-+.+++.+.++.|.. .|+
T Consensus 344 re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~G--ed~k~mY~f~D~-gGr~LaLRPDlTvPiAR~vA~n~~--~p~ 418 (763)
T PLN02972 344 REKAFSIITSVFKRHGATALDTPVFELRETLMGKYG--EDSKLIYDLADQ-GGELCSLRYDLTVPFARYVAMNGI--TSF 418 (763)
T ss_pred HHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccC--cchhheEEEECC-CCCEEEeCCCChHHHHHHHHhCCC--Ccc
Confidence 456788899999999999999999975543211111 1113345 7665 344568999999999999998853 378
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEcCCC----CCHHHHHHHHHHHHHHhCCC
Q 007872 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGAN----SGFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 474 ~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~----~~f~~ikg~le~ll~~lgi~ 526 (586)
|.|.+|+||+.+.......++..++++=+.|.. ++. |+-.++..+|..+|+.
T Consensus 419 KrYyiG~VFR~e~pqkGR~REF~Q~G~EIIG~~~~~~aDA-EVI~La~E~L~~LGi~ 474 (763)
T PLN02972 419 KRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDF-EIIKVLTELLDELDIG 474 (763)
T ss_pred eEEEeccEEecCCCCCCCCccceEEeEEEEcCCCcchhhH-HHHHHHHHHHHhCCCC
Confidence 999999999876543334567778877666642 233 4556667788889985
No 58
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=95.86 E-value=0.086 Score=59.86 Aligned_cols=132 Identities=14% Similarity=0.144 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCC-CCCce-eeCCccCCchhhcccchHHHHHHHHhccCC--
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH-- 469 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~-~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~-- 469 (586)
-.+.+.+.+|+.+...||+|+.|..|.+.+. +..-+..+. .++.. +.. ...+.-+|||.-.|++....+.+...
T Consensus 202 ~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l-~~~sg~~~~~~~emy~~~d-~~~~~~~LrP~~~~~i~~~~~~~~~s~~ 279 (563)
T TIGR00418 202 IRNLLEDFVRQKQIKYGYMEVETPIMYDLEL-WEISGHWDNYKERMFPFTE-LDNREFMLKPMNCPGHFLIFKSSLRSYR 279 (563)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccCCHHH-HHhcCCcccchhhcceecc-CCCceEEEecCCCHHHHHHHhCcCCChH
Confidence 4567889999999999999999999997764 443221110 12233 332 23355689999999999999988753
Q ss_pred CCCeeEEEeCcEeecCCCcc-c---ccccccEEEEEEcCC----CCCHHHHHHHHHHHHHHhCCCC
Q 007872 470 PKPIKIYEVGDVVLLDEKKD-V---GASCRRRLAALYCGA----NSGFELIHCLVDRIMEVIGTPF 527 (586)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~-~---g~~~~~~l~~~~~~~----~~~f~~ikg~le~ll~~lgi~~ 527 (586)
..|+|+|++|.+|+.+.... . ..++..+..+-+.+. .+.|.++-.+...++..||++.
T Consensus 280 ~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~~~~~~~e~~~~i~~~~~~~~~lgl~~ 345 (563)
T TIGR00418 280 DLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYSDFGFSF 345 (563)
T ss_pred HCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 46999999999998764321 1 124444444433222 1235568888889999999873
No 59
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.79 E-value=0.1 Score=56.82 Aligned_cols=132 Identities=20% Similarity=0.220 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCC--CCCce-eeCCccCCchhhcccchHHHHHHHHhccC-CC
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD--ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD-HP 470 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~--~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~-~~ 470 (586)
.+.+.+.+|+.+...||.|+-|..|-.-+......+...| .++.. ...- ....-.||+-+.+++.+.+..|.. .+
T Consensus 21 ~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dk-ggr~laLRpe~Tapv~R~~~en~~~~~ 99 (429)
T COG0124 21 REYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDK-GGRSLALRPELTAPVARAVAENKLDLP 99 (429)
T ss_pred HHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeC-CCCEEEecccCcHHHHHHHHhcccccc
Confidence 4567899999999999999999999776542222221111 02222 4333 445568999999999999999966 45
Q ss_pred CCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCH--HHHHHHHHHHHHHhCCCC
Q 007872 471 KPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGF--ELIHCLVDRIMEVIGTPF 527 (586)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f--~~ikg~le~ll~~lgi~~ 527 (586)
.|+|+|-+|.||+-+..+....|+.+++.+=+.|...-+ .++-.++..+++.||+..
T Consensus 100 ~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~lGi~~ 158 (429)
T COG0124 100 KPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILEALGIGG 158 (429)
T ss_pred CCeeEEEecceecCCCCCCCCceeeEEcCeEEeCCCCcccCHHHHHHHHHHHHHcCCCc
Confidence 689999999999876654444577777777555553322 356678889999999973
No 60
>PLN02908 threonyl-tRNA synthetase
Probab=95.78 E-value=0.061 Score=62.48 Aligned_cols=185 Identities=14% Similarity=0.170 Sum_probs=110.6
Q ss_pred hHHhhhcCCcCC-HHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCcchhHhHHHHhhCcCCCCCCCCCCC--
Q 007872 314 SYINHTIGVSLE-AEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV-- 390 (586)
Q Consensus 314 ~~i~~~lG~~l~-~~~i~~~L~~Lg~~~~~~~~~~~~~~l~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~-- 390 (586)
+.+.|+-|+.++ .+++.+.|+.+. ++.. ..+ -++++..+.=-|....|...
T Consensus 263 ~~lqRi~G~sfp~~~~l~~~~~~~~-e~~~--------------rdH-----------~~lg~~~~lf~~~~~~~G~~~~ 316 (686)
T PLN02908 263 ESLQRVYGISFPDKKLLKEYKHRIE-EAKK--------------RDH-----------RLLGQKQELFFFHELSPGSCFF 316 (686)
T ss_pred hhhEEEeeeccCChHHHHHHHhhhh-hccc--------------cCH-----------HHHHHhcCCeeecCCCCcceEE
Confidence 467788888775 466777777654 1111 111 12333322222333333322
Q ss_pred ---CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhc
Q 007872 391 ---KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHN 466 (586)
Q Consensus 391 ---~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N 466 (586)
...-.+.+.+.+|+.+...||+|+.|..+.+.+........+...++.. + -+-.+.-.||++.-|++....+..
T Consensus 317 lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~--~~~~~~~~Lrp~~~~~~~~~~~~~ 394 (686)
T PLN02908 317 LPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVF--EIEKQEFGLKPMNCPGHCLMFAHR 394 (686)
T ss_pred echHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEE--ecCCeeEEEcCCCcHHHHHHHhcc
Confidence 3334567889999999999999999999999885433221111112223 4 133455689999999999888776
Q ss_pred cC--CCCCeeEEEeCcEeecCCCcc-cc---cccccEEEE-EEcCC---CCCHHHHHHHHHHHHHHhCCC
Q 007872 467 KD--HPKPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAA-LYCGA---NSGFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 467 ~~--~~~~~~lFEiG~V~~~~~~~~-~g---~~~~~~l~~-~~~~~---~~~f~~ikg~le~ll~~lgi~ 526 (586)
.+ +..|+|++++|.+|+.+.+.. .| .++..+.-+ +++.. ...+.++-..+..++..||++
T Consensus 395 ~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~~q~~~e~~~~l~~~~~v~~~lG~~ 464 (686)
T PLN02908 395 VRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDEVKGVLDFLDYVYEVFGFT 464 (686)
T ss_pred ccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 55 246999999999998765421 12 233333322 22322 233555666777788888886
No 61
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=95.67 E-value=0.11 Score=53.16 Aligned_cols=156 Identities=13% Similarity=0.042 Sum_probs=94.1
Q ss_pred HhHHHHhhCcCCCCCCCCCCC-----CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHH-HcCCCCCCCCce-eeC
Q 007872 370 MEDVAIAYGYNNIPKRKPASV-----KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEIST-MLNRQTDESTAV-VGN 442 (586)
Q Consensus 370 iEEIar~yGydni~~~~p~~~-----~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~-~l~~~~~~~~~v-l~N 442 (586)
-.++++-.|.-.+. ..+... ...-.+.+.+.+++.+...||+|+.+..+.+.+.... ....+.-.++.. +.+
T Consensus 6 ~~~l~~~~~~~d~~-~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~ 84 (261)
T cd00778 6 YTEVITKAELIDYG-PVKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTH 84 (261)
T ss_pred HHHHHHHhCCcccC-CCCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEe
Confidence 35666666664332 122222 3334567888899999999999999999998764211 111111112344 644
Q ss_pred Ccc---CCchhhcccchHHHHHHHHhccC--CCCCeeEEEeCcEeecCCCccccc---ccccEEEE--EEcCC---CCCH
Q 007872 443 PRT---SDFEVVRTTLMPGILKTIGHNKD--HPKPIKIYEVGDVVLLDEKKDVGA---SCRRRLAA--LYCGA---NSGF 509 (586)
Q Consensus 443 P~s---~e~~~lR~sLlpgLL~~l~~N~~--~~~~~~lFEiG~V~~~~~~~~~g~---~~~~~l~~--~~~~~---~~~f 509 (586)
--. .+.-+||++--|.+....+.... +..|++++++|.+|+.+.....|. ++....-+ +.+.. ...+
T Consensus 85 ~~~~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~ 164 (261)
T cd00778 85 GGLEELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEV 164 (261)
T ss_pred cCCcccCCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHH
Confidence 221 23458999977777766666543 347999999999998665432222 22222111 12221 2347
Q ss_pred HHHHHHHHHHHHHh-CCC
Q 007872 510 ELIHCLVDRIMEVI-GTP 526 (586)
Q Consensus 510 ~~ikg~le~ll~~l-gi~ 526 (586)
.++..+.+.++..| |++
T Consensus 165 ~~~~~~~~~i~~~llgl~ 182 (261)
T cd00778 165 LQILDLYKEFYEDLLAIP 182 (261)
T ss_pred HHHHHHHHHHHHHhCCCe
Confidence 77888899999998 998
No 62
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=95.43 E-value=0.11 Score=60.08 Aligned_cols=184 Identities=13% Similarity=0.157 Sum_probs=109.0
Q ss_pred HHhhhcCCcCC-HHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCcchhHhHHHHhhCcCCCCCCCCCCC---
Q 007872 315 YINHTIGVSLE-AEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV--- 390 (586)
Q Consensus 315 ~i~~~lG~~l~-~~~i~~~L~~Lg~~~~~~~~~~~~~~l~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~--- 390 (586)
.+.|+-|+.++ .++....|+.+. ++.. ..+| ++++.+|.=-++...+.+.
T Consensus 217 ~l~Ri~g~a~~~~~~l~~~~~~~~-~~~~--------------~dH~-----------~l~~~~~l~~~~~~~~G~~~~~ 270 (639)
T PRK12444 217 VLQRIYGVAFSSQKELEEYLHFVE-EAAK--------------RNHR-----------KLGKELELFMFSEEAPGMPFYL 270 (639)
T ss_pred ceEEEEEEecCCHHHHHHHHHHHH-Hhcc--------------CCHH-----------HHHHHcCCcccccccCcceEEe
Confidence 46677888764 567777777764 1111 0111 3344443222333333322
Q ss_pred --CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhcc
Q 007872 391 --KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNK 467 (586)
Q Consensus 391 --~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~ 467 (586)
...-.+.+.+.+++.+...||+|+.|..|.+.+. +..-+.....++.+ .. ....+.=+|||+--|++....+...
T Consensus 271 p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l-~~~sG~~~~~~~emy~~-d~~~~~~~LrP~~~~~~~~~~~~~~ 348 (639)
T PRK12444 271 PKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQEL-WERSGHWDHYKDNMYFS-EVDNKSFALKPMNCPGHMLMFKNKL 348 (639)
T ss_pred eCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHH-HhhcCChhhhhhhcCee-cCCCcEEEEccCCCHHHHHHHhCcc
Confidence 2334556889999999999999999999999875 33222111111122 21 2233444699999999999996665
Q ss_pred C--CCCCeeEEEeCcEeecCCCcc-cc---cccccEEEEE-EcCC---CCCHHHHHHHHHHHHHHhCCC
Q 007872 468 D--HPKPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAAL-YCGA---NSGFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 468 ~--~~~~~~lFEiG~V~~~~~~~~-~g---~~~~~~l~~~-~~~~---~~~f~~ikg~le~ll~~lgi~ 526 (586)
+ +..|+|+|++|.+|+.+.... .| .++..+..+- ++.. ...+.++-..+..++..||++
T Consensus 349 ~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~~~~e~~~~~~~~~~i~~~lgl~ 417 (639)
T PRK12444 349 HSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQIEDEIKSVMAQIDYVYKTFGFE 417 (639)
T ss_pred cChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4 246999999999998665321 12 2333333221 2221 122455778888899999986
No 63
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=95.40 E-value=0.079 Score=59.70 Aligned_cols=145 Identities=17% Similarity=0.165 Sum_probs=92.5
Q ss_pred HHhhhcCCcC-CHHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCcchhHhHHHHhhCcCCCCCC-CCCCC--
Q 007872 315 YINHTIGVSL-EAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKR-KPASV-- 390 (586)
Q Consensus 315 ~i~~~lG~~l-~~~~i~~~L~~Lg~~~~~~~~~~~~~~l~V~vP~~R~DI~~~~DliEEIar~yGydni~~~-~p~~~-- 390 (586)
.+.|+-|+.. +.++..+.|++|. ++..- +. -+|++-.+.=.|++. .|.+.
T Consensus 110 ~l~Riyg~~f~~~~~l~~~~~~~e-ea~~r----dH---------------------r~lg~~l~lf~~~~~~~~G~~~~ 163 (545)
T PRK14799 110 QYVRIRGVAFETEEQLKDYLTWLE-KAEET----DH---------------------RLIGEKLDLFSFHEEAGSGLVLF 163 (545)
T ss_pred eeEEEEEeecCCHHHHHHHHHHHH-hcccC----CH---------------------HHHHHHcCCcccccccCCcceEE
Confidence 4567778866 5688899999876 22211 12 234444443334322 23222
Q ss_pred ---CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCC-CCCCce-eeCCccCCchhhcccchHHHHHHHHh
Q 007872 391 ---KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DESTAV-VGNPRTSDFEVVRTTLMPGILKTIGH 465 (586)
Q Consensus 391 ---~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~-~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~ 465 (586)
...-.+.+.+.+|+.+...||+|+.|..+.+.+. +..-+... -.++.. + -+..+.-.||+..-|++....+.
T Consensus 164 lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL-~k~SGh~~~y~~~mf~~--~~~~e~~~LrPm~cp~~~~~~~~ 240 (545)
T PRK14799 164 HPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDI-WKISGHYTLYRDKLIVF--NMEGDEYGVKPMNCPAHILIYKS 240 (545)
T ss_pred cChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHH-Hhhccccccchhhccee--eccCceEEeccCCCHHHHHHHhc
Confidence 3334567889999999999999999999876654 33222110 011222 3 12235568999999999999988
Q ss_pred ccCC--CCCeeEEEeCcEeecCCCc
Q 007872 466 NKDH--PKPIKIYEVGDVVLLDEKK 488 (586)
Q Consensus 466 N~~~--~~~~~lFEiG~V~~~~~~~ 488 (586)
+.+. ..|+|+||+|.||+.+.+.
T Consensus 241 ~~~SyrdLPlR~~e~g~vfR~E~sg 265 (545)
T PRK14799 241 KPRTYRDLPIRFSEFGHVYRWEKKG 265 (545)
T ss_pred cccChhhCCHhhEEecceecCCCCC
Confidence 7662 5799999999999876553
No 64
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=95.39 E-value=0.069 Score=58.76 Aligned_cols=134 Identities=12% Similarity=0.068 Sum_probs=81.6
Q ss_pred CChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCC-CCCce-eeCCccCCchhhcccchHHHHHHHHhccC-
Q 007872 392 PLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD- 468 (586)
Q Consensus 392 ~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~-~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~- 468 (586)
..-.+++.+.+|+.+...||+|+.+..|.+.+.. ..-+.... .++.. +.... .+.-+||++--|......+...+
T Consensus 47 ~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~-~~sg~~~~~~~emf~~~d~~-~~~~~L~Pt~e~~~~~~~~~~~~s 124 (439)
T PRK12325 47 LKVLKKIENIVREEQNRAGAIEILMPTIQPADLW-RESGRYDAYGKEMLRIKDRH-DREMLYGPTNEEMITDIFRSYVKS 124 (439)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccccHHHH-hhcCCccccchhheEEecCC-CCEEEEcCCCcHHHHHHHHHHhhh
Confidence 3446678999999999999999999999987643 22122111 13344 54443 34456888554444444443332
Q ss_pred -CCCCeeEEEeCcEeecCCCcccc---cccccEE-EEEE-cC---CCCCHHHHHHHHHHHHHHhCCCC
Q 007872 469 -HPKPIKIYEVGDVVLLDEKKDVG---ASCRRRL-AALY-CG---ANSGFELIHCLVDRIMEVIGTPF 527 (586)
Q Consensus 469 -~~~~~~lFEiG~V~~~~~~~~~g---~~~~~~l-~~~~-~~---~~~~f~~ikg~le~ll~~lgi~~ 527 (586)
+..|+|++++|.+|+.+.....| .++..+- +..+ +. ....+.++......+++.||++.
T Consensus 125 yrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~~ 192 (439)
T PRK12325 125 YKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVAYLRTFARLGLKA 192 (439)
T ss_pred chhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCce
Confidence 34799999999999765332222 1222220 1111 11 12346778888889999999874
No 65
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=95.06 E-value=0.26 Score=50.60 Aligned_cols=114 Identities=11% Similarity=0.013 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCCe
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~ 473 (586)
...+.+.+|+.|...||.|+-|..+++..- + .+.+.. +..........||+|----+-..++.+. -
T Consensus 4 rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~--~------~~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~~-----~ 70 (269)
T cd00669 4 RSKIIKAIRDFMDDRGFLEVETPMLQKITG--G------AGARPFLVKYNALGLDYYLRISPQLFKKRLMVGGL-----D 70 (269)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEeccCC--c------cccceEEeeecCCCCcEEeecCHHHHHHHHHhcCC-----C
Confidence 356788999999999999999999986421 0 011233 4211113334677664444333344433 2
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHh
Q 007872 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (586)
Q Consensus 474 ~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~l 523 (586)
|+|+||.||+.+..+..+..+..++-+-.+. .++.++...++.++..+
T Consensus 71 ~vf~i~~~fR~e~~~~~hl~EF~~le~e~~~--~~~~dvm~~~e~lv~~i 118 (269)
T cd00669 71 RVFEINRNFRNEDLRARHQPEFTMMDLEMAF--ADYEDVIELTERLVRHL 118 (269)
T ss_pred cEEEEecceeCCCCCCCcccceeEEEEEEec--CCHHHHHHHHHHHHHHH
Confidence 8999999998875444555666777654343 37888888777766543
No 66
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=95.01 E-value=0.15 Score=56.78 Aligned_cols=146 Identities=18% Similarity=0.195 Sum_probs=84.9
Q ss_pred HHHHHHHHHH-HHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCC----------------------------cc
Q 007872 396 NEFSDLMRLE-IAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNP----------------------------RT 445 (586)
Q Consensus 396 ~~~~~~lr~~-l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP----------------------------~s 445 (586)
+.+.+.+++. ....||+|+.+..|.+.+........+.-..+.. +..| +.
T Consensus 227 ~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~~~~~L~ 306 (517)
T PRK00960 227 RAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEKLKEKLR 306 (517)
T ss_pred HHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhccccccccccccccccc
Confidence 3455566655 4556999999999998876443321111111222 4322 22
Q ss_pred CCchhhcccchHHHHHHHHhc-cC-CCCCeeEEE-eCcEeecCCCccccc---ccccEEEEEEcCC----CCCHHHHHHH
Q 007872 446 SDFEVVRTTLMPGILKTIGHN-KD-HPKPIKIYE-VGDVVLLDEKKDVGA---SCRRRLAALYCGA----NSGFELIHCL 515 (586)
Q Consensus 446 ~e~~~lR~sLlpgLL~~l~~N-~~-~~~~~~lFE-iG~V~~~~~~~~~g~---~~~~~l~~~~~~~----~~~f~~ikg~ 515 (586)
...-+|||+--|......+.= +. +.+|+|+|+ .|.||+.......|. ++..+.-+.+.+. ..-+..+...
T Consensus 307 ~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h~f~tpEqs~ee~e~ll~~ 386 (517)
T PRK00960 307 DPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIVWLGTPEQVEEIRDELLKY 386 (517)
T ss_pred cccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEEEEeCHHHHHHHHHHHHHH
Confidence 233489999999998777632 22 346999999 679998764322222 3333333333222 1235556677
Q ss_pred HHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCc
Q 007872 516 VDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGR 550 (586)
Q Consensus 516 le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr 550 (586)
.+.+++.||++ ++....++|+|..|+
T Consensus 387 ~e~i~~~LgLp---------~~r~v~~DPFf~~~~ 412 (517)
T PRK00960 387 AHILAEKLDLE---------YWREVGDDPFYLEGR 412 (517)
T ss_pred HHHHHHHcCCC---------ceEEecccccccccC
Confidence 78888999998 344445556666544
No 67
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=94.93 E-value=0.069 Score=60.44 Aligned_cols=70 Identities=17% Similarity=0.189 Sum_probs=61.6
Q ss_pred CeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhhHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHH
Q 007872 2 PTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGI 81 (586)
Q Consensus 2 p~i~~~~~~l~~~~g~~~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~Gi 81 (586)
++|+++.+++.+++|.+++.+|+.+.|..+|++++.. + | .+++.+|+-|+|+..-.=|
T Consensus 278 ~~i~~~~~~i~~~lG~~l~~~ei~~iL~~Lg~~v~~~-~--------------------~-~~~v~vP~~R~DI~~~~Dl 335 (551)
T TIGR00471 278 RFMEVSVEYINSLLGLNLSADEIAHSLKKMRLDAVQS-D--------------------E-KLKVVIPAYRVDILHEVDI 335 (551)
T ss_pred ceEEecHHHHHHHhCCCCCHHHHHHHHHHhCCCeEec-C--------------------C-cEEEEcCCCccccCchhHH
Confidence 4699999999999999999999999999999998421 1 1 3889999999999999999
Q ss_pred HHHHHHHcCCCC
Q 007872 82 AQALRVFNKQQE 93 (586)
Q Consensus 82 ARel~a~~g~~~ 93 (586)
+-|++-++|-..
T Consensus 336 iEEIaR~yGyd~ 347 (551)
T TIGR00471 336 IEDVAIGYGYNN 347 (551)
T ss_pred HHHHHHHhCccc
Confidence 999999998543
No 68
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=94.37 E-value=0.11 Score=58.95 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=61.9
Q ss_pred CeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhhHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHH
Q 007872 2 PTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGI 81 (586)
Q Consensus 2 p~i~~~~~~l~~~~g~~~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~Gi 81 (586)
++|.++.+.+.+++|.+++.+++.+.|..+|++++... + .+.|.+|+.|+|+..-.=|
T Consensus 275 ~~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~~~~~~---------------------~-~~~v~vP~~R~DI~~~~Dl 332 (552)
T PRK09616 275 RTREVSVEYINKLLGIDLSAEEIIELLERMRYDAEIGD---------------------D-KVKVTVPPYRVDILHEVDV 332 (552)
T ss_pred eEEEecHHHHHHHhCCCCCHHHHHHHHHHcCCCcEecC---------------------C-eEEEEeCCCcccccccchH
Confidence 36999999999999999999999999999999984221 1 4889999999999999999
Q ss_pred HHHHHHHcCCCCC
Q 007872 82 AQALRVFNKQQEI 94 (586)
Q Consensus 82 ARel~a~~g~~~~ 94 (586)
+-|++-++|-..+
T Consensus 333 iEEiaR~yGyd~i 345 (552)
T PRK09616 333 IEDVAIAYGYNNL 345 (552)
T ss_pred HHHHHHHhCcccC
Confidence 9999999985433
No 69
>PLN02678 seryl-tRNA synthetase
Probab=94.36 E-value=0.35 Score=53.17 Aligned_cols=128 Identities=11% Similarity=0.077 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhccc---chHHHHHHHHhccC-
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTT---LMPGILKTIGHNKD- 468 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~s---LlpgLL~~l~~N~~- 468 (586)
-...+.+-+++.+...||+|+.+..++..+........+...++.. +.+.- ++.-.+.|+ |.|... |..
T Consensus 176 L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~~-~~~yLi~TaE~~l~~~h~-----~~~~ 249 (448)
T PLN02678 176 LNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEG-DDKYLIATSEQPLCAYHR-----GDWI 249 (448)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCCC-CceeeecccccccChHHh-----cccC
Confidence 3456777788888899999999999999886554433322223344 64321 233344443 444442 222
Q ss_pred --CCCCeeEEEeCcEeecCCCc----cccc---ccccEEEE-EEcCCC-----CCHHHHHHHHHHHHHHhCCCC
Q 007872 469 --HPKPIKIYEVGDVVLLDEKK----DVGA---SCRRRLAA-LYCGAN-----SGFELIHCLVDRIMEVIGTPF 527 (586)
Q Consensus 469 --~~~~~~lFEiG~V~~~~~~~----~~g~---~~~~~l~~-~~~~~~-----~~f~~ikg~le~ll~~lgi~~ 527 (586)
+..|+|++++|.+|+.+.++ ..|. ++..++-. .++.+. ..|+++.+..+.++..||+++
T Consensus 250 s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~lpy 323 (448)
T PLN02678 250 DPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLGIPY 323 (448)
T ss_pred CHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHcCCCe
Confidence 23699999999999876542 1222 22222222 233332 247788899999999999984
No 70
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=94.33 E-value=0.1 Score=61.71 Aligned_cols=72 Identities=24% Similarity=0.383 Sum_probs=62.5
Q ss_pred CeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhhHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHH
Q 007872 2 PTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGI 81 (586)
Q Consensus 2 p~i~~~~~~l~~~~g~~~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~Gi 81 (586)
++|+++.+.+.+++|.+++.+++.+.|..+|++++...+ ..++|.+|+.|+|+..-.=|
T Consensus 401 ~~I~~~~~~i~~ilG~~i~~~~i~~iL~~Lgf~~~~~~~---------------------~~~~V~vPs~R~DI~~~~Dl 459 (791)
T PRK00629 401 PTITLRLERINRLLGTEISDEEIVDILKRLGFEVTEVDG---------------------DGLTVTVPSWRFDIEIEEDL 459 (791)
T ss_pred eEEEecHHHHHHHhCCCCCHHHHHHHHHHCCCEEEecCC---------------------CeEEEECCCCccccCcccHH
Confidence 369999999999999999999999999999999953210 14899999999999999999
Q ss_pred HHHHHHHcCCCCC
Q 007872 82 AQALRVFNKQQEI 94 (586)
Q Consensus 82 ARel~a~~g~~~~ 94 (586)
+-|++-++|-..+
T Consensus 460 iEEI~RiyGyd~i 472 (791)
T PRK00629 460 VEEVARIYGYDNI 472 (791)
T ss_pred HHHHHHHhCcccC
Confidence 9999999995433
No 71
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=94.25 E-value=0.62 Score=51.62 Aligned_cols=145 Identities=15% Similarity=0.142 Sum_probs=88.7
Q ss_pred HHHHHHHHH-HHCCceEEecccccChHHHHHHcCCCCCCCCce-eeC----------------------------CccCC
Q 007872 398 FSDLMRLEI-AMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGN----------------------------PRTSD 447 (586)
Q Consensus 398 ~~~~lr~~l-~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~N----------------------------P~s~e 447 (586)
+.+.+.+.+ ...||+|+....|++.+.....-..+.-..+.. +.. .+..+
T Consensus 229 L~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L~~~le~~ 308 (520)
T TIGR00415 229 LEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDKLKNGIKDP 308 (520)
T ss_pred HHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhccccccccccccccccccccccCC
Confidence 444444333 346999999999999886543321111111222 422 12333
Q ss_pred chhhcccchHHHHHHHHhccC--CCCCeeEEE-eCcEeecCCCccccc---ccccEEEEEEcCC----CCCHHHHHHHHH
Q 007872 448 FEVVRTTLMPGILKTIGHNKD--HPKPIKIYE-VGDVVLLDEKKDVGA---SCRRRLAALYCGA----NSGFELIHCLVD 517 (586)
Q Consensus 448 ~~~lR~sLlpgLL~~l~~N~~--~~~~~~lFE-iG~V~~~~~~~~~g~---~~~~~l~~~~~~~----~~~f~~ikg~le 517 (586)
.-+||++--..+....+.-.. +..|+++|. .|.||+.......|. ++..+.-++..+. ..-+..+....+
T Consensus 309 ~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~~~tpEea~e~~e~mle~~~ 388 (520)
T TIGR00415 309 GYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVWIAEPEETEEIRDKTLELAE 388 (520)
T ss_pred ceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEEEeCHHHHHHHHHHHHHHHH
Confidence 456999988888877775442 346999999 568998765322222 2333333333222 123556778888
Q ss_pred HHHHHhCCCCCCCCCCccEEEEecCCCCccCCce
Q 007872 518 RIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQ 551 (586)
Q Consensus 518 ~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~ 551 (586)
.+++.|+++ |+....++|+|..|++
T Consensus 389 ~~l~~L~Lp---------yrv~~adDPFf~~g~k 413 (520)
T TIGR00415 389 DAADELDLE---------WWTEVGDDPFYLEGRK 413 (520)
T ss_pred HHHHHcCCC---------eEEeecCCcccccccC
Confidence 999999998 7888778888887776
No 72
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=93.71 E-value=0.14 Score=58.52 Aligned_cols=72 Identities=18% Similarity=0.282 Sum_probs=61.3
Q ss_pred eEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhhHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHHH
Q 007872 3 TVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIA 82 (586)
Q Consensus 3 ~i~~~~~~l~~~~g~~~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiA 82 (586)
+|+++.+++.+++|.+++.+|+.++|..+|++++.... ++..+++.+|+.|.|++.-.=|+
T Consensus 311 ~i~~~~~~i~~~lG~~l~~~ei~~iL~~l~~~~~~~~~-------------------~~~~~~V~vP~~R~DI~~~~Dii 371 (597)
T PLN02265 311 TMEVDLSYINSSIGVSLDAEEVASLLNKMQLQAEQSSD-------------------DGCTIRVSVPPTRSDILHPCDVA 371 (597)
T ss_pred eEEeeHHHHHHHhCCCCCHHHHHHHHHHCCCCeEeccc-------------------CCCceEEEcCCccccccchhhhh
Confidence 58899999999999999999999999999999853210 01148899999999999999999
Q ss_pred HHHHHHcCCCC
Q 007872 83 QALRVFNKQQE 93 (586)
Q Consensus 83 Rel~a~~g~~~ 93 (586)
-|++..+|-..
T Consensus 372 EEVar~yGydn 382 (597)
T PLN02265 372 EDVAIAYGYNN 382 (597)
T ss_pred hhhHheecccc
Confidence 99999988533
No 73
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=93.53 E-value=0.26 Score=50.10 Aligned_cols=126 Identities=8% Similarity=0.029 Sum_probs=80.4
Q ss_pred CChHHHHHHHHHHHHHHCC--ceEEecccccChHHHHHHcCCCCCCCCceeeCCccCCchhhcccchHHHHHHHHhccC-
Q 007872 392 PLALNEFSDLMRLEIAMNG--FTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKD- 468 (586)
Q Consensus 392 ~~~~~~~~~~lr~~l~~~G--f~Ev~t~sl~s~~~~~~~l~~~~~~~~~vl~NP~s~e~~~lR~sLlpgLL~~l~~N~~- 468 (586)
..-.+++.+.+|+.+...| |+|+.|..+.+.. .+... .. -.+ ...+.-.||+.+.|+.+-.+++...
T Consensus 32 ~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~-mf~~~-~g-------~~d-~~~~~~~Lrp~~~~~~~~~~~~~~~~ 101 (254)
T cd00774 32 VELKNNIKSAWRKSFVLEEEDMLEIDSPIITPEL-MFKTS-IG-------PVE-SGGNLGYLRPETAQGIFVNFKNLLEF 101 (254)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHH-Hheee-ec-------ccC-CCCcccccCCcccchHHHHHHHHHHH
Confidence 3445678999999999885 9999999999884 22210 00 000 0123458999999877755544432
Q ss_pred --CCCCeeEEEeCcEeecCCCccc---ccccccEEEEEE-cCC---CCCHHHHHHHHHHHHHHhCCCC
Q 007872 469 --HPKPIKIYEVGDVVLLDEKKDV---GASCRRRLAALY-CGA---NSGFELIHCLVDRIMEVIGTPF 527 (586)
Q Consensus 469 --~~~~~~lFEiG~V~~~~~~~~~---g~~~~~~l~~~~-~~~---~~~f~~ikg~le~ll~~lgi~~ 527 (586)
+..|+++++||+||+.+.+... ..++..+..+-+ +.. ...|.........++..+|++.
T Consensus 102 ~~~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~~~~~~e~~~~v~~~~~~~l~~~G~~~ 169 (254)
T cd00774 102 NRRKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPKFAQSP 169 (254)
T ss_pred hCCCCCchhhhhchhhccccCcccceeeeccchhhheeeeECCCCchHHHHHHHHHHHHHHHHcCCCc
Confidence 3679999999999986543221 123433333322 222 2237778888888999999853
No 74
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=93.09 E-value=0.78 Score=48.55 Aligned_cols=111 Identities=14% Similarity=0.119 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-ee---CCccCCchhhcccchHHHHHHHHhccCCCC
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VG---NPRTSDFEVVRTTLMPGILKTIGHNKDHPK 471 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~---NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~ 471 (586)
..+.+.+|+.|...||.||-|..+++... .++.+.. +. +.-...-..|++|----+=..++...
T Consensus 26 s~i~~~ir~ff~~~~f~Ev~tP~l~~~~~--------~~~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g~---- 93 (335)
T PF00152_consen 26 SAILQAIREFFDKRGFIEVDTPILTSSTC--------EGGAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAGL---- 93 (335)
T ss_dssp HHHHHHHHHHHHHTT-EEE---SEESSSS--------SSSSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTTH----
T ss_pred HHHHHHHHHHHHhCCceEEcCceeecccc--------CccccccccccchhhhcccceecCcChHHHHhhhccccc----
Confidence 45778999999999999999999998642 1113344 54 22222334688876654444454433
Q ss_pred CeeEEEeCcEeecCCC-cccccccccEEEEEEcCCCCCHHHHHHHHHHHHH
Q 007872 472 PIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (586)
Q Consensus 472 ~~~lFEiG~V~~~~~~-~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~ 521 (586)
-|+||||.+|+.++. +..+..|..++-+=.++ +++.++-..++.++.
T Consensus 94 -~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~--~~~~~lm~~~e~li~ 141 (335)
T PF00152_consen 94 -ERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAF--ADYDDLMDLIEELIK 141 (335)
T ss_dssp -SEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEET--SSHHHHHHHHHHHHH
T ss_pred -hhhhheecceeccCcccccchhhhhhhhhcccc--CcHHHhHHHHHHHHH
Confidence 489999999997765 34444566666654443 466665555555443
No 75
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=93.01 E-value=0.94 Score=49.56 Aligned_cols=129 Identities=12% Similarity=0.118 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccC--CCC
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HPK 471 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~--~~~ 471 (586)
...+.+-+++.+...||+|+.+..|++.+........+...++.. |.+ +--+||++-=+.+....+.... +..
T Consensus 176 ~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~~----~~~~L~pTsE~~~~~~~~~~i~s~~~L 251 (418)
T TIGR00414 176 ERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLED----TDLYLIPTAEVPLTNLHRNEILEEEEL 251 (418)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEecC----CCEEEEeCCcHHHHHHHhCcCCChHhC
Confidence 456777789999999999999999999986444332222123344 653 2347888865556555444433 246
Q ss_pred CeeEEEeCcEeecCCCc----cccc---ccccEEEE-EEcCC---CCCHHHHHHHHHHHHHHhCCCC
Q 007872 472 PIKIYEVGDVVLLDEKK----DVGA---SCRRRLAA-LYCGA---NSGFELIHCLVDRIMEVIGTPF 527 (586)
Q Consensus 472 ~~~lFEiG~V~~~~~~~----~~g~---~~~~~l~~-~~~~~---~~~f~~ikg~le~ll~~lgi~~ 527 (586)
|+++|++|.+|+.+... ..|. ++..+.-+ +++.+ ...|..+....+.++..||+++
T Consensus 252 Plr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~Lglp~ 318 (418)
T TIGR00414 252 PIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEESAEELEEMTSDAEQILQELELPY 318 (418)
T ss_pred CeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCce
Confidence 99999999999765421 1121 23222222 22322 2347888899999999999984
No 76
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=93.01 E-value=0.22 Score=58.95 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=61.6
Q ss_pred CeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhhHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHH
Q 007872 2 PTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGI 81 (586)
Q Consensus 2 p~i~~~~~~l~~~~g~~~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~Gi 81 (586)
.+|.++.+.+.+++|.+++.+|+.+.|..+|++++... + .++|.+|+.|.|+..-.=|
T Consensus 406 ~~i~~~~~~i~~~lG~~i~~~ei~~iL~~Lgf~~~~~~---------------------~-~~~V~vP~~R~DI~~~~Dl 463 (798)
T TIGR00472 406 KKISLRIKKLNKILGISLSDEEVRDILKRLGFKVEKQK---------------------D-GWEVTVPSYRHDITIEEDL 463 (798)
T ss_pred eEEEecHHHHHHHhCCccCHHHHHHHHHHCCCEEEecC---------------------C-eEEEECCCCccccccchhh
Confidence 35899999999999999999999999999999995321 1 3889999999999999999
Q ss_pred HHHHHHHcCCCC
Q 007872 82 AQALRVFNKQQE 93 (586)
Q Consensus 82 ARel~a~~g~~~ 93 (586)
+-|++-++|-..
T Consensus 464 iEEI~R~yGydn 475 (798)
T TIGR00472 464 IEEIARIYGYDN 475 (798)
T ss_pred HhhhhhhhCccc
Confidence 999999998533
No 77
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=92.46 E-value=1.1 Score=46.02 Aligned_cols=119 Identities=9% Similarity=0.015 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP 472 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~ 472 (586)
...++++++++.+...||.|+.|.+|-.-+. +. ........... ...+.+-+.-+||+-+.|++.+.++.+. ..+
T Consensus 9 ~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~-~~-~~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~--~~~ 84 (272)
T PRK12294 9 ALKESETAFLKYFNKADYELVDFSVIEKLDW-KQ-LNHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYP--TAA 84 (272)
T ss_pred HHHHHHHHHHHHHHHcCCeEeeCCcchhHHh-hh-ccccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcC--CCC
Confidence 3456889999999999999999999965443 11 11100011223 3444677788999999999999987653 235
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEcC--CCCCHHHHHHHHHHHHHHhC
Q 007872 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCG--ANSGFELIHCLVDRIMEVIG 524 (586)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~--~~~~f~~ikg~le~ll~~lg 524 (586)
.|+|-+|+||+.+. +..++++=+.| ..++.+++.=.+ ..+..+|
T Consensus 85 ~Rl~Y~g~VfR~~~-------~~~Q~GvEliG~~~~a~~e~l~la~-~~l~~~g 130 (272)
T PRK12294 85 TKVAYAGLIIRNNE-------AAVQVGIENYAPSLANVQQSFKLFI-QFIQQQL 130 (272)
T ss_pred ceEEEeccEeccCC-------CcceeceEEECCCchhHHHHHHHHH-HHHHHhC
Confidence 79999999997542 23444443345 445566663333 3344454
No 78
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=92.44 E-value=0.34 Score=56.52 Aligned_cols=73 Identities=8% Similarity=0.181 Sum_probs=61.5
Q ss_pred CeEEechHHHHHHhCC-----C---CCHHHHHHHhhhcCCcccccchhhHHHhhhccccccCCCCCCceEEEEecCCCcc
Q 007872 2 PTVSVGRDRLFAALGK-----S---YTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRY 73 (586)
Q Consensus 2 p~i~~~~~~l~~~~g~-----~---~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~ 73 (586)
++|.++.+++.+++|. + ++.+++.+.|..+|++++... ++..+.|.+|+.|+
T Consensus 303 ~~I~l~~~~i~~iLG~~~~~~~~~~i~~~ei~~iL~~Lgf~v~~~~--------------------~~~~~~V~vP~~R~ 362 (704)
T CHL00192 303 RRIKLSYKKIKDILGPIKINTNTRYLSPKEITNALKRLNFKITYDS--------------------LKLNWEVLIPSYRK 362 (704)
T ss_pred eeEEeCHHHHHHhcCCCcccCccccCCHHHHHHHHHHCCCEEEecC--------------------CCceEEEEcCCCCc
Confidence 4699999999999998 7 999999999999999984210 11138899999998
Q ss_pred -cccCHHHHHHHHHHHcCCCCC
Q 007872 74 -DLLCLEGIAQALRVFNKQQEI 94 (586)
Q Consensus 74 -Dlls~~GiARel~a~~g~~~~ 94 (586)
|+..-.=|+-|++-++|-..+
T Consensus 363 ~DI~~~~DliEEIaRiyGYdnI 384 (704)
T CHL00192 363 DDIVREIDVIEEIARIYGFNNF 384 (704)
T ss_pred hhcCchhHHHHHHHHhcCcccC
Confidence 999999999999999985433
No 79
>PRK09350 poxB regulator PoxA; Provisional
Probab=92.31 E-value=0.52 Score=49.33 Aligned_cols=111 Identities=14% Similarity=0.028 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-e--eCCc--cCCchhhcccchHHHHH-HHHhccC
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-V--GNPR--TSDFEVVRTTLMPGILK-TIGHNKD 468 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l--~NP~--s~e~~~lR~sLlpgLL~-~l~~N~~ 468 (586)
...+.+.+|+.|...||.||.|..|..-.. ... ...++ + .-|- .....+||+|-=-. ++ .++..
T Consensus 8 r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~-~~~------~~~~f~~~y~~~~~~~~~~~~L~~SPe~~-~kr~la~~-- 77 (306)
T PRK09350 8 RAKIIAEIRRFFADRGVLEVETPILSQATV-TDI------HLVPFETRFVGPGASQGKTLWLMTSPEYH-MKRLLAAG-- 77 (306)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeEecccC-CCc------cCCceeeeeccccccCCcceEEecCHHHH-HHHHhhcc--
Confidence 346788999999999999999999974221 000 00111 1 1010 02234777653222 33 33322
Q ss_pred CCCCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHH
Q 007872 469 HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIM 520 (586)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll 520 (586)
. -|+|++|.||+.++.+..+..|..++-+=.++ .++.++-..++.++
T Consensus 78 --~-~rvf~i~~~FR~e~~~~~H~~EFt~lE~y~~~--~d~~dlm~~~E~li 124 (306)
T PRK09350 78 --S-GPIFQICKSFRNEEAGRYHNPEFTMLEWYRPH--YDMYRLMNEVDDLL 124 (306)
T ss_pred --c-cceEEecceeecCCCCCCCCcHHHhhhhhhhC--CCHHHHHHHHHHHH
Confidence 2 39999999998766533334444444431122 35555555555444
No 80
>PRK06462 asparagine synthetase A; Reviewed
Probab=92.04 E-value=0.98 Score=47.91 Aligned_cols=116 Identities=13% Similarity=0.084 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCc-eeeCCccCCchhhcccchHHHHHHHHhccCCCCCee
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTA-VVGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~-vl~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~~ 474 (586)
.++.+.+|+.|...||.||-|..+++..+ ..+....+ ... +.....-..-..|++|---- ++.+.... -|
T Consensus 34 s~i~~~iR~ff~~~~f~EV~TP~l~~~~~--~~~~~g~~-~~~~~~~~~~~~~~~yL~~Spql~-k~ll~~g~-----~r 104 (335)
T PRK06462 34 SSILRYTREFLDGRGFVEVLPPIISPSTD--PLMGLGSD-LPVKQISIDFYGVEYYLADSMILH-KQLALRML-----GK 104 (335)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEecCCC--CCCCcccc-CCccccccccCCCceeeccCHHHH-HHHHHhhc-----Cc
Confidence 45788999999999999999999986521 11100000 000 00000112334677774333 44444321 47
Q ss_pred EEEeCcEeecCCCcc---cccccccEEEEEEcCCCCCHHHHHHHHHHHHHH
Q 007872 475 IYEVGDVVLLDEKKD---VGASCRRRLAALYCGANSGFELIHCLVDRIMEV 522 (586)
Q Consensus 475 lFEiG~V~~~~~~~~---~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~ 522 (586)
+||||++|+.++... .+..|..++-+=.++ .++.++-..++.++..
T Consensus 105 VfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~--~d~~dlm~~~e~lv~~ 153 (335)
T PRK06462 105 IFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEG--ADLDEVMDLIEDLIKY 153 (335)
T ss_pred EEEEeccccCCCCCCCCCCCCCchheeeehhhc--CCHHHHHHHHHHHHHH
Confidence 999999998766533 444455666542233 4788877777766653
No 81
>PLN02837 threonine-tRNA ligase
Probab=91.95 E-value=0.95 Score=52.04 Aligned_cols=136 Identities=12% Similarity=0.077 Sum_probs=83.0
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccC-
Q 007872 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD- 468 (586)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~- 468 (586)
...-.+.+.+-+++.....||+|+.|..+.+.+........+...++.. +.+ +..+.=.|||+=.|......+.-.+
T Consensus 246 G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~-~~~~~y~l~p~~~p~~~~~~~~~~~S 324 (614)
T PLN02837 246 GAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMD-IEDELYQLRPMNCPYHILVYKRKLHS 324 (614)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccC-CCCceEEECCCCcHHHHHHHhCccCC
Confidence 3344567788889989899999999999999886433322221112333 321 2234447999999986655444332
Q ss_pred -CCCCeeEEEeCcEeecCCCc-cccc---ccccEEE-EEEcCC---CCCHHHHHHHHHHHHHHhCCCC
Q 007872 469 -HPKPIKIYEVGDVVLLDEKK-DVGA---SCRRRLA-ALYCGA---NSGFELIHCLVDRIMEVIGTPF 527 (586)
Q Consensus 469 -~~~~~~lFEiG~V~~~~~~~-~~g~---~~~~~l~-~~~~~~---~~~f~~ikg~le~ll~~lgi~~ 527 (586)
+..|++++|+|.||+...+. -.|. ++....- .+++.. ...|..+....+.++..||++.
T Consensus 325 yrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~f~~~~q~~~e~~~~l~~~~~~~~~lg~~~ 392 (614)
T PLN02837 325 YRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILKQFGFSK 392 (614)
T ss_pred hhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 34699999999999876531 1121 2211111 012222 2346777888888898999874
No 82
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=91.93 E-value=1.5 Score=48.14 Aligned_cols=129 Identities=12% Similarity=0.079 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHH-HCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccC--CC
Q 007872 395 LNEFSDLMRLEIA-MNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HP 470 (586)
Q Consensus 395 ~~~~~~~lr~~l~-~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~--~~ 470 (586)
.+.+.+-+++.+. ..||+|+.+..|++.+........+...++.. |.+ +.-+||++-=+.+....+.... +.
T Consensus 173 ~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~~----~~~~L~pTsE~~l~~l~~~~~~s~~d 248 (425)
T PRK05431 173 ERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIED----DDLYLIPTAEVPLTNLHRDEILDEEE 248 (425)
T ss_pred HHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEecC----CCEEEEeCCcHHHHHHHhcccCCHHh
Confidence 4456777778888 89999999999999886544332222223344 753 3347888887777655554433 24
Q ss_pred CCeeEEEeCcEeecCCCc----cccc---ccccEEEE-EEcCC---CCCHHHHHHHHHHHHHHhCCCC
Q 007872 471 KPIKIYEVGDVVLLDEKK----DVGA---SCRRRLAA-LYCGA---NSGFELIHCLVDRIMEVIGTPF 527 (586)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~----~~g~---~~~~~l~~-~~~~~---~~~f~~ikg~le~ll~~lgi~~ 527 (586)
.|++++++|.+|+.+... ..|. ++..+.-+ +++.. ...|..+....+.++..||+++
T Consensus 249 LPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~l~~~~~i~~~Lglpy 316 (425)
T PRK05431 249 LPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPEDSYAELEELTANAEEILQKLELPY 316 (425)
T ss_pred CCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECHHHHHHHHHHHHHHHHHHHHHcCCcE
Confidence 699999999999765432 1121 22222221 22322 2458889999999999999984
No 83
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=91.88 E-value=2 Score=47.88 Aligned_cols=134 Identities=9% Similarity=-0.009 Sum_probs=82.4
Q ss_pred CChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCC-CCCce-eeCCc---cCCchhhcccchHHHHHHHHhc
Q 007872 392 PLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPR---TSDFEVVRTTLMPGILKTIGHN 466 (586)
Q Consensus 392 ~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~-~~~~v-l~NP~---s~e~~~lR~sLlpgLL~~l~~N 466 (586)
..-.+.+.+.+++.+...||+|+.+..|.+.+.....-+.... .++.. +..-- ..+.-+||++.-+++....+.-
T Consensus 44 ~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~~ 123 (477)
T PRK08661 44 YAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKKW 123 (477)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHHhh
Confidence 3345678888999999999999999999988753221111100 12333 53311 1345689999988877766665
Q ss_pred cC--CCCCeeEEEeCcEeecCCCccccc---ccccEEEE--EEcCC---CCCHHHHHHHHHHHH-HHhCCC
Q 007872 467 KD--HPKPIKIYEVGDVVLLDEKKDVGA---SCRRRLAA--LYCGA---NSGFELIHCLVDRIM-EVIGTP 526 (586)
Q Consensus 467 ~~--~~~~~~lFEiG~V~~~~~~~~~g~---~~~~~l~~--~~~~~---~~~f~~ikg~le~ll-~~lgi~ 526 (586)
.+ +.+|++++++|.||+.+.. ..|. ++....-+ +.+.. ...+..+......++ +.||++
T Consensus 124 i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~~y~~i~~~~Lglp 193 (477)
T PRK08661 124 IQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEIYKEFFEDYLAIP 193 (477)
T ss_pred hcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 43 4579999999999986654 2221 11111100 01111 123566777888888 889987
No 84
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=91.64 E-value=1.8 Score=44.76 Aligned_cols=112 Identities=12% Similarity=0.046 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCceeeCCc-cCCchhhcccchHHHHHHHHhccCCCCCe
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPR-TSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~vl~NP~-s~e~~~lR~sLlpgLL~~l~~N~~~~~~~ 473 (586)
..++.+.+|+.|...||.||-|..|+.... . + .....+.... ..+.-.||+|----+=..++.- --
T Consensus 4 Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~--~--g----~~~f~~~~~~~~~~~~~L~~Spql~lk~ll~~g-----~~ 70 (280)
T cd00777 4 RSRVIKAIRNFLDEQGFVEIETPILTKSTP--E--G----ARDFLVPSRLHPGKFYALPQSPQLFKQLLMVSG-----FD 70 (280)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCeeecCCC--C--C----CCCceeccccCCCceeecccCHHHHHHHHHhcC-----cC
Confidence 356788999999999999999999985321 0 0 0111121111 1222237765432211122221 14
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHH
Q 007872 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (586)
Q Consensus 474 ~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~ 521 (586)
|+|+||.||+.+........+..++.+=.+. .++.++...++.++.
T Consensus 71 ~v~~i~~~fR~e~~~~~r~~Ef~~~e~e~~~--~~~~dlm~~~e~li~ 116 (280)
T cd00777 71 RYFQIARCFRDEDLRADRQPEFTQIDIEMSF--VDQEDIMSLIEGLLK 116 (280)
T ss_pred cEEEeccceeCCCCCCCccceeEEeEeeecc--CCHHHHHHHHHHHHH
Confidence 8999999998765433333445565543343 378888887777665
No 85
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=91.26 E-value=1.1 Score=50.93 Aligned_cols=112 Identities=15% Similarity=0.098 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce--eeCCccCCchhhcccchHHHHHHHHhccCCCCCe
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV--VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v--l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~ 473 (586)
.++.+.+|+.|...||.||-|..|++..- +. ...++ =.|.+..++ +||+|-=-- |+.+.. .+. -
T Consensus 257 S~Ii~aiR~Ff~~rGFlEVeTPiL~~~~G-----GA---~a~PF~T~~n~~d~~l-YLriSpEL~-lKrLlv---gG~-~ 322 (585)
T PTZ00417 257 TKIINYLRNFLNDRGFIEVETPTMNLVAG-----GA---NARPFITHHNDLDLDL-YLRIATELP-LKMLIV---GGI-D 322 (585)
T ss_pred HHHHHHHHHHHHHCCeEEEeCCeeeccCC-----cc---cceeEEecccCCCcce-EEeecHHHH-HHHHHH---hCC-C
Confidence 45778899999999999999999987521 00 01122 125443333 677663322 333321 122 4
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHh
Q 007872 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (586)
Q Consensus 474 ~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~l 523 (586)
|+||||++|+.++.+.++..|.+.+-+=.+. +++.++-.+++.++..+
T Consensus 323 rVfeIgp~FRnE~~~~rHnpEFTmlE~y~ay--~dy~dlM~l~E~Li~~v 370 (585)
T PTZ00417 323 KVYEIGKVFRNEGIDNTHNPEFTSCEFYWAY--ADFYDLIKWSEDFFSQL 370 (585)
T ss_pred CEEEEcccccCCCCCCCccceeeeeeeeeec--CCHHHHHHHHHHHHHHH
Confidence 8999999998776544444555665543343 58999887777776543
No 86
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=90.62 E-value=1.9 Score=45.68 Aligned_cols=110 Identities=12% Similarity=0.037 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHH-HHH-HhccCCCCC
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGIL-KTI-GHNKDHPKP 472 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL-~~l-~~N~~~~~~ 472 (586)
..+.+.+|+.|...||.||-|..|++.... .....+ +.+.-......|++|- .|. +.+ +.. -
T Consensus 12 s~i~~~iR~ff~~~gf~EV~TP~L~~~~~~--------~~~~~f~~~~~~~~~~~yL~~Sp--ql~~k~ll~~g-----~ 76 (329)
T cd00775 12 SKIISYIRKFLDDRGFLEVETPMLQPIAGG--------AAARPFITHHNALDMDLYLRIAP--ELYLKRLIVGG-----F 76 (329)
T ss_pred HHHHHHHHHHHHHCCCEEEECCccccCCCC--------ccceeEEeccCCCCcceeeccCH--HHHHHHHHhcC-----C
Confidence 457789999999999999999999765310 001122 2111122334677663 333 333 222 1
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHH
Q 007872 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEV 522 (586)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~ 522 (586)
-++|+||.||+.++.+..+..|..++-+=.++ .++.++...++.++..
T Consensus 77 ~~vf~i~~~FR~E~~~~rHl~EFt~le~e~~~--~~~~~~m~~~e~li~~ 124 (329)
T cd00775 77 ERVYEIGRNFRNEGIDLTHNPEFTMIEFYEAY--ADYNDMMDLTEDLFSG 124 (329)
T ss_pred CcEEEEeccccCCCCCCCCCCceEEEEEeeec--CCHHHHHHHHHHHHHH
Confidence 58999999998776543444455565543333 4788888877777653
No 87
>smart00873 B3_4 B3/4 domain. This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Probab=90.01 E-value=0.16 Score=48.02 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=54.0
Q ss_pred EEeeehhhcccCCC-eEEEecCCCceEEEeCCCcc-cCChhHHHhhhccccccccccccccCCCcceEEEeCCCC-----
Q 007872 159 VAIGTHDLDTLQGP-FTYEALPPSHINFVPLKQTR-DFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRT----- 231 (586)
Q Consensus 159 VdIgn~Dld~i~~p-~~y~~~~~~~i~f~~L~~~~-~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~VI~D~~~~----- 231 (586)
+-++.||+|++.+. +..+....++ .|.++++.+ ......++ + .+....+.|+|..|.
T Consensus 50 ~p~~~~D~d~i~~~~l~l~~~~~~e-~~~~l~~~~~~~~~~~~v--------i-------~d~~~~~~i~g~~g~~~~~~ 113 (174)
T smart00873 50 QPLHAFDLDKIKGKDIPLRRAKEGE-TFETLDGKEYELDEGDLV--------I-------ADDEGPLALAGVMGGEESEV 113 (174)
T ss_pred CCCeeEcHHHcCCCeEEEEECCCCC-EEEecCCcEEecCCCCEE--------E-------EeCCcCEEEEEEecCCccee
Confidence 56778999999876 6666666544 689998632 22211111 1 122233566666553
Q ss_pred -----eeeecCcccCCcc-eeccCCceEE
Q 007872 232 -----VLSLPPIINGAHS-AITLKTKNVF 254 (586)
Q Consensus 232 -----~lslagIigg~~s-~It~~T~nI~ 254 (586)
.++++|+.++..+ +++..|++++
T Consensus 114 ~~~t~~i~~~~~~~~~~~i~~~~~~~~i~ 142 (174)
T smart00873 114 TENTTNIFLEPAIFSPRTIRITARTLNLF 142 (174)
T ss_pred cCCCCEEEEEEEEeCcHHHHHHHHHcCCc
Confidence 8999999999999 9999999885
No 88
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=89.69 E-value=1.3 Score=50.80 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccC--CC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HP 470 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~--~~ 470 (586)
-.+.+.+-+++.+...||+|+.|..+.+.+....+-....-..+.. +.. ..+.-+||++--|++....+...+ +.
T Consensus 229 i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~--~~e~l~Lrp~~c~~~~~~~~~~~~Syrd 306 (613)
T PRK03991 229 IRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKS--DKKDLMLRFAACFGQFLMLKDMTISYKN 306 (613)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecC--CCceEEEecCCCHHHHHHHhCCcCchhh
Confidence 3456788899999999999999999977654322211111112334 532 234568999999999877766554 34
Q ss_pred CCeeEEEeCc-EeecCCCcc-ccc---ccccEEEE-EEcCC----CCCHHHHHHHHHHHHHHhCCC
Q 007872 471 KPIKIYEVGD-VVLLDEKKD-VGA---SCRRRLAA-LYCGA----NSGFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 471 ~~~~lFEiG~-V~~~~~~~~-~g~---~~~~~l~~-~~~~~----~~~f~~ikg~le~ll~~lgi~ 526 (586)
.|++++|+|+ +|+.....+ .|. ++..+.-+ +++.. ...|..+......++..||++
T Consensus 307 LPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~~~lGl~ 372 (613)
T PRK03991 307 LPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETGEDLGRD 372 (613)
T ss_pred CChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 6999999999 998765432 222 22221111 12221 123556666667777778876
No 89
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=89.52 E-value=2.4 Score=47.43 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-e-eCCccCCchhhcccchHHHH-HHH-HhccCCCC
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-V-GNPRTSDFEVVRTTLMPGIL-KTI-GHNKDHPK 471 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l-~NP~s~e~~~lR~sLlpgLL-~~l-~~N~~~~~ 471 (586)
.++.+.+|+.|...||.||-|..|++... +. ...++ . .|-... ..+||+| |.|. +.+ ....
T Consensus 176 s~i~~~iR~f~~~~gF~EVeTPiL~~~~~-----Ga---~a~pF~t~~~~~~~-~~yL~~S--pql~lk~l~v~g~---- 240 (491)
T PRK00484 176 SKIISAIRRFLDNRGFLEVETPMLQPIAG-----GA---AARPFITHHNALDI-DLYLRIA--PELYLKRLIVGGF---- 240 (491)
T ss_pred HHHHHHHHHHHHHCCCEEEECCceeccCC-----Cc---cceeeeeccccCCC-ceEeccC--HHHHHHHHHhccC----
Confidence 45778899999999999999999975421 00 01122 1 232222 2357766 3443 332 2221
Q ss_pred CeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHh
Q 007872 472 PIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (586)
Q Consensus 472 ~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~l 523 (586)
-|+||||++|+.++...++..|..++-+=.+. .++.++-.+++.++..+
T Consensus 241 -~rVfei~~~FR~E~~~~rH~pEFt~lE~e~a~--~d~~d~m~~~E~li~~i 289 (491)
T PRK00484 241 -ERVYEIGRNFRNEGIDTRHNPEFTMLEFYQAY--ADYNDMMDLTEELIRHL 289 (491)
T ss_pred -CcEEEEecceecCCCCCCcCCceEEEEEEEec--CCHHHHHHHHHHHHHHH
Confidence 48999999998766544455566666543333 48888888888777654
No 90
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=89.46 E-value=1.5 Score=49.14 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-e-eCCccCCchhhcccchHHHH-HHH-HhccCCCC
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-V-GNPRTSDFEVVRTTLMPGIL-KTI-GHNKDHPK 471 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l-~NP~s~e~~~lR~sLlpgLL-~~l-~~N~~~~~ 471 (586)
.++.+.+|+.|...||.||-|..|++..- +. . ..++ . .|-.. ...+||.| |.|- +.+ ....
T Consensus 176 s~i~~~iR~fl~~~gF~EVeTP~L~~~~g-----ga--~-a~pF~t~~~~~~-~~~yLriS--pELylKrlivgG~---- 240 (496)
T TIGR00499 176 SKIIKAIRRFLDDRGFIEVETPMLQVIPG-----GA--N-ARPFITHHNALD-MDLYLRIA--PELYLKRLIVGGF---- 240 (496)
T ss_pred HHHHHHHHHHHHHCcCEEEeCCeeecCCC-----Cc--c-ceeEEeecccCC-CceEEecC--HHHHHHHHHhCCC----
Confidence 45778899999999999999999986421 00 0 1122 2 23332 23468888 5654 333 2221
Q ss_pred CeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHh
Q 007872 472 PIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (586)
Q Consensus 472 ~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~l 523 (586)
-|+||||++|+.++.+.++..|.+++-+=.+. +++.++-.+++.++..+
T Consensus 241 -~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~--~d~~dlm~~~E~li~~i 289 (496)
T TIGR00499 241 -EKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAY--ADYEDLMDLTENLFKFL 289 (496)
T ss_pred -CceEEEecceecCCCCCcccchhheeehhhhc--CCHHHHHHHHHHHHHHH
Confidence 48999999998776544444555565542222 47888888887777643
No 91
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=89.14 E-value=1.1 Score=46.77 Aligned_cols=111 Identities=16% Similarity=0.126 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-ee--CC-ccCCchhhcccchHHHH-H-HHHhccC
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VG--NP-RTSDFEVVRTTLMPGIL-K-TIGHNKD 468 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~--NP-~s~e~~~lR~sLlpgLL-~-~l~~N~~ 468 (586)
...+.+.+|+.+...||.|+-|..|.+..-. + .+.+++ +. +| -...-..||+| |.|. + .++...
T Consensus 4 rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~-e------~~~~~F~~~y~~~~~~~~~~yL~~S--pql~lk~ll~~g~- 73 (304)
T TIGR00462 4 RARLLAAIRAFFAERGVLEVETPLLSPAPVT-D------PHLDAFATEFLGPDGEGRPLYLQTS--PEYAMKRLLAAGS- 73 (304)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeEecCCCC-C------cCCcceeeeccCCCCCCcceeeecC--HHHHHHHHHhccC-
Confidence 4567899999999999999999999865210 0 001112 21 11 11123567776 4442 2 344322
Q ss_pred CCCCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHH
Q 007872 469 HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (586)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~ 521 (586)
-|+||||.||+.++.+..+..+..++-+ +. .-.++.++-..++.++.
T Consensus 74 ----~rVfeigp~FRaE~~~~rHl~EFtmLE~-e~-~~~d~~d~m~~~e~li~ 120 (304)
T TIGR00462 74 ----GPIFQICKVFRNGERGRRHNPEFTMLEW-YR-PGFDYHDLMDEVEALLQ 120 (304)
T ss_pred ----CCEEEEcCceeCCCCCCCcccHHHhHHH-HH-HcCCHHHHHHHHHHHHH
Confidence 4899999999876653233333333332 11 12467777666666654
No 92
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=88.83 E-value=2.2 Score=47.85 Aligned_cols=110 Identities=12% Similarity=0.093 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce--eeCCccCCchhhcccchHHH-HHHH-HhccCCCC
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV--VGNPRTSDFEVVRTTLMPGI-LKTI-GHNKDHPK 471 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v--l~NP~s~e~~~lR~sLlpgL-L~~l-~~N~~~~~ 471 (586)
.++.+.+|+.|...||.||-|..|.+..- +. ...++ -.|-...+ .+||+|- .| |+.+ +...
T Consensus 188 s~i~~~iR~f~~~~gFiEVeTPiL~~~~g-----Ga---~a~pF~t~~~~~~~~-~yL~~Sp--ELylKrlivgG~---- 252 (505)
T PRK12445 188 SKILAAIRQFMVARGFMEVETPMMQVIPG-----GA---SARPFITHHNALDLD-MYLRIAP--ELYLKRLVVGGF---- 252 (505)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCeeEecCC-----CC---cccceecccccCCcc-eeeecCH--HHHHHHHHhccC----
Confidence 45778899999999999999999975321 00 01111 12433222 3687774 44 3332 2221
Q ss_pred CeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHh
Q 007872 472 PIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (586)
Q Consensus 472 ~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~l 523 (586)
-|+||||++|+.++.+.++..|..++-+=.+. +++.++-.+++.++..+
T Consensus 253 -~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~--~d~~d~m~l~E~li~~l 301 (505)
T PRK12445 253 -ERVFEINRNFRNEGISVRHNPEFTMMELYMAY--ADYHDLIELTESLFRTL 301 (505)
T ss_pred -CcEEEEehhccCCCCCCCcCcccceeeeeeec--CCHHHHHHHHHHHHHHH
Confidence 48999999998776544455556666543333 38888888888887654
No 93
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=88.79 E-value=1.5 Score=48.77 Aligned_cols=134 Identities=13% Similarity=0.088 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcC-CCCCCCCce-eeCCcc---CCchhhcccchHHHHHHHHhccC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLN-RQTDESTAV-VGNPRT---SDFEVVRTTLMPGILKTIGHNKD 468 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~-~~~~~~~~v-l~NP~s---~e~~~lR~sLlpgLL~~l~~N~~ 468 (586)
-.+++.+.+++.+...||+|+.+..|.+.+....... ...-.++.. +..--. .+--+|||+.-|.+....+...+
T Consensus 40 i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~i~ 119 (472)
T TIGR00408 40 IWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKWVK 119 (472)
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhcccc
Confidence 4567888899999999999999999998875332111 110012333 544221 23448999999999987777654
Q ss_pred --CCCCeeEEEeCcEeecCCCccccc---ccccEEEE--EEcCC---CCCHHHHHHHHHHHHH-HhCCCC
Q 007872 469 --HPKPIKIYEVGDVVLLDEKKDVGA---SCRRRLAA--LYCGA---NSGFELIHCLVDRIME-VIGTPF 527 (586)
Q Consensus 469 --~~~~~~lFEiG~V~~~~~~~~~g~---~~~~~l~~--~~~~~---~~~f~~ikg~le~ll~-~lgi~~ 527 (586)
+.+|++++++|.||+.+.....|. ++...--+ +.+.. ...+..+......++. .||++.
T Consensus 120 S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y~~i~~~~lglp~ 189 (472)
T TIGR00408 120 SYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIYKEFIENSLAIPY 189 (472)
T ss_pred ChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhccCCeE
Confidence 357999999999997654321111 11110000 01111 1235567778888897 899873
No 94
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=88.78 E-value=3.2 Score=47.76 Aligned_cols=112 Identities=14% Similarity=0.113 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-e-eCCccCCchhhcccchHHHHHHHHhccCCCCCe
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-V-GNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l-~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~ 473 (586)
.++.+.+|+.|...||.||-|..|.+... +.+..++ . .|-... -.+||+|-=--|=..+..- . -
T Consensus 237 s~I~~aiR~ff~~~gFlEVeTPiL~~~~~--------ga~a~pF~t~~n~~~~-~~yL~~SPELylKrLivgG----~-e 302 (659)
T PTZ00385 237 HVMLQALRDYFNERNFVEVETPVLHTVAS--------GANAKSFVTHHNANAM-DLFLRVAPELHLKQCIVGG----M-E 302 (659)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCEeeccCC--------CCCccceEeecccCCC-CEEecCChHHHHHHHhhcc----c-C
Confidence 45788899999999999999999975321 0011222 2 122221 2357766322221122222 1 5
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHh
Q 007872 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (586)
Q Consensus 474 ~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~l 523 (586)
|+||||++|+.++....+..|..++-+=.+ -.++.++-.+++.++..+
T Consensus 303 rVyeIg~~FRnE~~~~rH~pEFTmlE~y~a--~~d~~d~m~l~E~li~~~ 350 (659)
T PTZ00385 303 RIYEIGKVFRNEDADRSHNPEFTSCEFYAA--YHTYEDLMPMTEDIFRQL 350 (659)
T ss_pred CEEEEeceecCCCCCCCccccccceeeeee--cCCHHHHHHHHHHHHHHH
Confidence 899999999877654344445555543222 348999999999888765
No 95
>PF11734 TilS_C: TilS substrate C-terminal domain; InterPro: IPR012796 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of lysidine-tRNA(Ile) synthetase, which ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a PP-loop motif involved in ATP binding. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) versus AUG (Met) and UGA (stop) versus UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, E. coli NtrL, and B. subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain. The HUP domain class (after HIGH-signature proteins, UspA, and PP-ATPase) groups together PP-loop ATPases, the nucleotide-binding domains of class I aminoacyl-tRNA synthetases, UspA protein (USPA domains), photolyases, and electron transport flavoproteins (ETFP). The HUP domain is a distinct class of alpha/beta domain[]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3A2K_A 3HJ7_A 1NI5_A.
Probab=88.63 E-value=1.6 Score=35.51 Aligned_cols=69 Identities=16% Similarity=0.218 Sum_probs=44.9
Q ss_pred EecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCcceEEEeCCCCeeeecCcccCCcceeccCCceEEE
Q 007872 176 EALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFI 255 (586)
Q Consensus 176 ~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~VI~D~~~~~lslagIigg~~s~It~~T~nI~i 255 (586)
+...+++ +|.|.+.....+..+++. +.+...+. .+.+|+|++++ .+++++|+--++...++++|+.+-|
T Consensus 4 R~r~~gd-ri~~~g~~~~k~lKk~~~----e~kIP~~~-----R~~~Pll~~~~-~iv~v~g~~~~~~~~~~~~~~~~~i 72 (74)
T PF11734_consen 4 RFRQPGD-RIRPAGRGGSKKLKKLFQ----EAKIPPWQ-----RDRLPLLCDGG-EIVWVPGLRVSERFSADPNTKGWRI 72 (74)
T ss_dssp EC--TTS-EEEBTTSSSEEEHHHHHH----HCT--HHH-----CCCSEEEEETT-EEEEETTTEEBCCGC-SSSS--EEE
T ss_pred EecCCCC-EEEECCCCCCchHHHHHH----HcCCCHHH-----HCcEEEEEECC-EEEEEeCeeeChhheecCCCCcEEE
Confidence 3334443 888887654456666664 44444432 35679999977 6999999999999999999998744
No 96
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=87.74 E-value=4.2 Score=44.94 Aligned_cols=112 Identities=13% Similarity=0.011 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-ee---CCccC----CchhhcccchHHHHHHHHhc
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VG---NPRTS----DFEVVRTTLMPGILKTIGHN 466 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~---NP~s~----e~~~lR~sLlpgLL~~l~~N 466 (586)
...+.+.+|+.|...||.||-|..|++..- +.+.+++ +. +|.+. .-..|++|----+ +.++..
T Consensus 136 Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~~--------eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~l-q~l~~g 206 (450)
T PRK03932 136 RNTLAQAIHEFFNENGFVWVDTPIITASDC--------EGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYA-EAYAMA 206 (450)
T ss_pred HHHHHHHHHHHHHHCCCEEecCCceeccCC--------CCCCCceEeecccccccccccCCCcccccCHHHHH-HHHHhc
Confidence 346788999999999999999999986421 0112334 41 11111 2246777764433 444422
Q ss_pred cCCCCCeeEEEeCcEeecCCC-cccccccccEEEEEEcCCCCCHHHHHHHHHHHHHH
Q 007872 467 KDHPKPIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFELIHCLVDRIMEV 522 (586)
Q Consensus 467 ~~~~~~~~lFEiG~V~~~~~~-~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~ 522 (586)
. -|+||||++|+.++. ...+..|..++-+=.+. .+++++-.+++.++..
T Consensus 207 ----~-~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~~--~~~~~~m~~~e~li~~ 256 (450)
T PRK03932 207 ----L-GKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAF--ADLEDNMDLAEEMLKY 256 (450)
T ss_pred ----c-CCeEEeeeccccCCCCCccccccccccceEEec--cCHHHHHHHHHHHHHH
Confidence 1 489999999987654 22333455555542233 3677777766666553
No 97
>PLN02502 lysyl-tRNA synthetase
Probab=86.20 E-value=3.3 Score=46.88 Aligned_cols=112 Identities=12% Similarity=0.048 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-e-eCCccCCchhhcccchHHHHHHHHhccCCCCCe
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-V-GNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l-~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~ 473 (586)
.++.+.+|+.|...||.||-|..|++..- +. ...++ . .|-.. ...+||+|-=--|=..+..-. -
T Consensus 233 s~i~~~iR~fl~~~gF~EVeTPiL~~~~g-----GA---~a~pF~t~~n~~~-~~~yL~~Spel~lK~L~v~g~-----~ 298 (553)
T PLN02502 233 AKIISYIRRFLDDRGFLEVETPMLNMIAG-----GA---AARPFVTHHNDLN-MDLYLRIATELHLKRLVVGGF-----E 298 (553)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeeeccCC-----Cc---cccceeeecccCC-cceeeecCHHHHHHHHHHhcc-----C
Confidence 35678899999999999999999976421 10 01122 2 23332 234677764332212232221 4
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHh
Q 007872 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (586)
Q Consensus 474 ~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~l 523 (586)
|+||||++|+.++.+.++..|..++-+=.+ -+++.++-.+++.++..+
T Consensus 299 rVfeIg~~FRnE~~~~rH~pEFtmlE~y~a--~~d~~dlm~~~E~li~~i 346 (553)
T PLN02502 299 RVYEIGRQFRNEGISTRHNPEFTTCEFYQA--YADYNDMMELTEEMVSGM 346 (553)
T ss_pred CEEEEcCeeeCCCCCCccccceeehhhhhh--cCCHHHHHHHHHHHHHHH
Confidence 899999999876554334344444443112 247888887777776533
No 98
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=85.79 E-value=6.2 Score=45.87 Aligned_cols=112 Identities=14% Similarity=0.107 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCceeeCCc-cCCchhhcccchHHHHHHHHhccCCCCCe
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPR-TSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~vl~NP~-s~e~~~lR~sLlpgLL~~l~~N~~~~~~~ 473 (586)
..++.+.+|+.|...||.||-|..|+.... ..+.+.++.... ..++-.|++| |.|.+-+.-- .+. -
T Consensus 159 Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~--------eGAr~~~~p~~~~~~~~y~L~qS--PQlykq~lm~--~G~-~ 225 (706)
T PRK12820 159 RHRIIKCARDFLDSRGFLEIETPILTKSTP--------EGARDYLVPSRIHPKEFYALPQS--PQLFKQLLMI--AGF-E 225 (706)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCccccCCC--------CCCcceEEeeecCCCcceecCCC--HHHHHHHHHh--ccC-C
Confidence 345788899999999999999999985321 111122211111 1222236654 5555443211 111 5
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHH
Q 007872 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (586)
Q Consensus 474 ~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~ 521 (586)
|+||||++|+.++.......|..++-+=.+. .+++++-.++|.++.
T Consensus 226 rvfqI~~~FR~E~~~t~r~pEFT~LE~E~af--~d~~dvm~l~E~li~ 271 (706)
T PRK12820 226 RYFQLARCFRDEDLRPNRQPEFTQLDIEASF--IDEEFIFELIEELTA 271 (706)
T ss_pred cEEEEechhcCCCCCCCcCccccccceeecc--CCHHHHHHHHHHHHH
Confidence 8999999998765432222344455432233 478888888887765
No 99
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=85.12 E-value=5.3 Score=42.13 Aligned_cols=110 Identities=17% Similarity=0.120 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCCe
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~ 473 (586)
...+.+.+|+.+...||.|+-|..+....- + .+.+++ + |- ...-..||+|---- |+.+... --
T Consensus 27 rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~--e------~~~~~f~~-~~-~~~~~yL~~Spql~-lk~l~~~-----~~ 90 (322)
T cd00776 27 RSEVLRAFREFLRENGFTEVHTPKITSTDT--E------GGAELFKV-SY-FGKPAYLAQSPQLY-KEMLIAA-----LE 90 (322)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCceecCCC--C------ccCCcccc-cc-CCCcceecCCHHHH-HHHHHHh-----hh
Confidence 345788999999999999999999987321 0 011122 2 11 11223577665443 3443322 24
Q ss_pred eEEEeCcEeecCCCc-ccccccccEEEEEEcCCCCCHHHHHHHHHHHHH
Q 007872 474 KIYEVGDVVLLDEKK-DVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (586)
Q Consensus 474 ~lFEiG~V~~~~~~~-~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~ 521 (586)
|+||||.||+.++.. ..+..|..++-+=.++. .++.++...++.++.
T Consensus 91 ~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~-~~~~dlm~~~e~ll~ 138 (322)
T cd00776 91 RVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFI-EDYNEVMDLIEELIK 138 (322)
T ss_pred hhEEeccccccCCCCcCCCcceeeccceeeecc-CCHHHHHHHHHHHHH
Confidence 799999999876532 13334455554322321 268877777666654
No 100
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=83.45 E-value=11 Score=42.93 Aligned_cols=112 Identities=13% Similarity=0.147 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCcee-eCCccCCchhhcccchHHHHHHHHhccCCCCCe
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVV-GNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~vl-~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~ 473 (586)
..++.+.+|+.|...||.||-|..|++... ..+.+.++ .+-...++-.||+| |.|.+-+.-- .+. =
T Consensus 141 Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~--------eGar~f~vp~~~~~~~~y~L~qS--pQlykq~l~v--~G~-e 207 (583)
T TIGR00459 141 RHKVTKAVRNFLDQQGFLEIETPMLTKSTP--------EGARDYLVPSRVHKGEFYALPQS--PQLFKQLLMV--SGV-D 207 (583)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeccCCC--------CCCcceeeeeecCCCceeecCCC--HHHHHHHHHh--ccc-C
Confidence 346788999999999999999999985321 01111111 11011122236655 5554432110 112 4
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHH
Q 007872 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (586)
Q Consensus 474 ~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~ 521 (586)
|+||||++|+.++.......|..++-+=++. ++++++-.++|.++.
T Consensus 208 rvfqI~~~FR~E~~~t~r~pEFT~le~E~af--~d~~dvm~~~E~li~ 253 (583)
T TIGR00459 208 RYYQIARCFRDEDLRADRQPEFTQIDMEMSF--MTQEDVMELIEKLVS 253 (583)
T ss_pred cEEEEcceeeCCCCCCCCCcccCcceeeecC--CCHHHHHHHHHHHHH
Confidence 8999999998765433333455555543333 478888887777665
No 101
>PLN02850 aspartate-tRNA ligase
Probab=83.11 E-value=5.2 Score=45.15 Aligned_cols=108 Identities=16% Similarity=0.204 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHH--HHhccCCCCC
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKT--IGHNKDHPKP 472 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~--l~~N~~~~~~ 472 (586)
..+.+.+|+.|...||.|+-|..|++... + .+...+ +..+ .....|++| |.|.+- ++...
T Consensus 229 s~i~~~~R~fl~~~gF~EV~TP~L~~~~~--e------gga~~F~v~yf--~~~~~L~qS--pql~kq~li~~g~----- 291 (530)
T PLN02850 229 SQVCNLFREFLLSKGFVEIHTPKLIAGAS--E------GGSAVFRLDYK--GQPACLAQS--PQLHKQMAICGDF----- 291 (530)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCccccCCC--c------cccceeeeccC--CcceecCCC--HHHHHHHHHHhcC-----
Confidence 35778899999999999999999976431 0 112223 4211 233467666 444333 22222
Q ss_pred eeEEEeCcEeecCCC-cccccccccEEEEEEcCCCCCHHHHHHHHHHHHH
Q 007872 473 IKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (586)
Q Consensus 473 ~~lFEiG~V~~~~~~-~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~ 521 (586)
-|+||||.||+.+++ +..+..|..++-+ .+.-..++.++-.+++.++.
T Consensus 292 ~rVfeIgp~FRaE~s~t~RHl~EFt~Le~-Em~~~~~y~evm~~~E~ll~ 340 (530)
T PLN02850 292 RRVFEIGPVFRAEDSFTHRHLCEFTGLDL-EMEIKEHYSEVLDVVDELFV 340 (530)
T ss_pred CceEEEecccccCCCCCCccchhhccchh-hhhhhcCHHHHHHHHHHHHH
Confidence 389999999987653 1122223333321 11112356666666555543
No 102
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=82.52 E-value=6.6 Score=44.51 Aligned_cols=110 Identities=12% Similarity=0.153 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCCee
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~~ 474 (586)
..+.+.+|+.|...||.|+-|..|++... + .+.+.+ +. --.....|++| |.|.+-+.--- + --|
T Consensus 217 s~i~~~~R~fl~~~gFiEV~TP~L~~~~~--e------gga~~F~v~--yf~~~~~L~qS--pql~kq~li~~--g-~~r 281 (550)
T PTZ00401 217 SRVCQYFRQFLIDSDFCEIHSPKIINAPS--E------GGANVFKLE--YFNRFAYLAQS--PQLYKQMVLQG--D-VPR 281 (550)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCccccCCC--C------ccccccccc--cCCCCeecCCC--HHHHHHHHHhc--C-CCC
Confidence 35788899999999999999999976421 0 011222 21 11233466666 44444332211 1 158
Q ss_pred EEEeCcEeecCCCc-ccccccccEEEEEEcCCCCCHHHHHHHHHHHHH
Q 007872 475 IYEVGDVVLLDEKK-DVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (586)
Q Consensus 475 lFEiG~V~~~~~~~-~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~ 521 (586)
+||||.||+.++.. ..+..|..++-+= ..-..++.++-.+++.++.
T Consensus 282 VfeI~p~FRaE~s~T~RHl~EFt~Le~E-~~~~~~y~evm~~~e~l~~ 328 (550)
T PTZ00401 282 VFEVGPVFRSENSNTHRHLTEFVGLDVE-MRINEHYYEVLDLAESLFN 328 (550)
T ss_pred EEEEeCeEeCCCCCCCCCccchhhhhhh-hHhcCCHHHHHHHHHHHHH
Confidence 99999999876532 1222233333220 1112356677766666654
No 103
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=81.46 E-value=14 Score=40.85 Aligned_cols=81 Identities=11% Similarity=0.081 Sum_probs=50.8
Q ss_pred CchhhcccchHHHHHHHHhccC--C-CCCeeEEEeCcEeecCCCccccc---ccccEEEE-EEcCCC---CCHHHHHHHH
Q 007872 447 DFEVVRTTLMPGILKTIGHNKD--H-PKPIKIYEVGDVVLLDEKKDVGA---SCRRRLAA-LYCGAN---SGFELIHCLV 516 (586)
Q Consensus 447 e~~~lR~sLlpgLL~~l~~N~~--~-~~~~~lFEiG~V~~~~~~~~~g~---~~~~~l~~-~~~~~~---~~f~~ikg~l 516 (586)
+.-+|||-...|+.-..+...+ + .+|++++|+|.||+...+.-.|. ++....-+ +++.+. ..+......+
T Consensus 158 ~~~~lRpetaqg~~~~f~~~~~syr~dLPlr~aq~g~~~RnE~s~~~gL~RvReF~q~e~hiF~~peq~~~e~~~~l~~~ 237 (456)
T PRK04173 158 SLGYLRPETAQGIFVNFKNVLRTARKKLPFGIAQIGKSFRNEITPRNFIFRTREFEQMELEFFVKPGTDNEWFAYWIELR 237 (456)
T ss_pred cceeeccccchhHHHHHHHHHHhccccCCeeeeEEchhHhCccCCCCCceeeceeeeeEEEEEECcChHHHHHHHHHHHH
Confidence 3456788788888777666554 4 57999999999998654422221 33222221 334432 2355666777
Q ss_pred HHHHHHhCCCC
Q 007872 517 DRIMEVIGTPF 527 (586)
Q Consensus 517 e~ll~~lgi~~ 527 (586)
..++..+|++.
T Consensus 238 ~~~l~~lG~~~ 248 (456)
T PRK04173 238 KNWLLDLGIDP 248 (456)
T ss_pred HHHHHHcCCCc
Confidence 88888899873
No 104
>PLN02320 seryl-tRNA synthetase
Probab=81.36 E-value=7.9 Score=43.20 Aligned_cols=127 Identities=15% Similarity=0.169 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCC-Cce-eeCCccCCchhhcccchHHHHHHHHhccC---CC
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDES-TAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD---HP 470 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~-~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~---~~ 470 (586)
..+.+-+++.+...||+|+.+..++..+........+.... ... +.+ +++-.+-|+=.|- .....|.- +.
T Consensus 237 ~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~ie~---ed~~Li~TaE~Pl--~~~~~~~ils~~d 311 (502)
T PLN02320 237 MALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSIDG---SDQCLIGTAEIPV--GGIHMDSILLESA 311 (502)
T ss_pred HHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEECC---CceEEeecccccc--cccccccccCHhh
Confidence 45677778888888999999999999987554433221111 223 543 2332222221220 11111211 24
Q ss_pred CCeeEEEeCcEeecCCCc----cccc---ccccEE-EEEEcCC---CCCHHHHHHHHHHHHHHhCCCC
Q 007872 471 KPIKIYEVGDVVLLDEKK----DVGA---SCRRRL-AALYCGA---NSGFELIHCLVDRIMEVIGTPF 527 (586)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~----~~g~---~~~~~l-~~~~~~~---~~~f~~ikg~le~ll~~lgi~~ 527 (586)
.|+|+++.|.+|+.+.++ ..|. ++..+. .+++|.+ ..-|+++-..++.++..||+++
T Consensus 312 LPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~peqs~~e~e~ll~~~e~i~~~LgLpy 379 (502)
T PLN02320 312 LPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEESESFHEELIQIEEDLFTSLGLHF 379 (502)
T ss_pred CCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEECHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 699999999999876542 1221 121111 1123433 2347788899999999999984
No 105
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=81.25 E-value=12 Score=41.23 Aligned_cols=107 Identities=13% Similarity=0.138 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHH--HHhccCCCCC
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKT--IGHNKDHPKP 472 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~--l~~N~~~~~~ 472 (586)
..+.+.+|+.|...||.||-|..|++..- +.+.+.+ +. ....-..||+|- .|.+- ++...
T Consensus 137 s~i~~~iR~ff~~~gf~EV~TP~L~~~~~--------eg~~~~f~v~--~~~~~~yL~~Sp--ql~~q~li~~g~----- 199 (428)
T TIGR00458 137 SGVLESVREFLAEEGFIEVHTPKLVASAT--------EGGTELFPIT--YFEREAFLGQSP--QLYKQQLMAAGF----- 199 (428)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCceecCCC--------CCCcceeeeE--ecCCcEEECcCH--HHHHHHHHhccc-----
Confidence 45778899999999999999999986431 0112222 31 011223566664 33332 22211
Q ss_pred eeEEEeCcEeecCCCc-ccccccccEEEEEEcCCCCCHHHHHHHHHHHHH
Q 007872 473 IKIYEVGDVVLLDEKK-DVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (586)
Q Consensus 473 ~~lFEiG~V~~~~~~~-~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~ 521 (586)
-|+||||++|+.++.. ..+..|..++-+=.+. ++..++-..++.++.
T Consensus 200 ~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~--~~~~dlm~~~e~li~ 247 (428)
T TIGR00458 200 ERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAF--EDHHDVMDILEELVV 247 (428)
T ss_pred CcEEEEecccccCCCCCccchheeeEeeeeecc--CCHHHHHHHHHHHHH
Confidence 4899999999876542 1233455555442233 366666665555543
No 106
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=81.03 E-value=12 Score=40.55 Aligned_cols=156 Identities=14% Similarity=0.127 Sum_probs=102.1
Q ss_pred CCcchhHhHHHHhhCcC------------CCCCCCCCCC-CCCh-----HHHHHHHHHHHHHHCCceEEecccccChHHH
Q 007872 364 LHPCDVMEDVAIAYGYN------------NIPKRKPASV-KPLA-----LNEFSDLMRLEIAMNGFTEVLTWILCSSKEI 425 (586)
Q Consensus 364 ~~~~DliEEIar~yGyd------------ni~~~~p~~~-~~~~-----~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~ 425 (586)
..+.++-|+||.+.--. +|..++|+-. ...| .+.+-+.+++.+...|+.++=|..|--++..
T Consensus 28 a~~~~~~~~va~~~~~~~~~~~~~~~~~~k~~lKtPKGTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL 107 (518)
T KOG1936|consen 28 ASPEQISEEVALILALKNGLGRSGSIFKKKFSLKTPKGTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEIL 107 (518)
T ss_pred CChhHhhHHHHHHHHHhcccCCCCCCcCcceeecCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHH
Confidence 34556778888887544 3444455433 1222 2456677899999999999999999776653
Q ss_pred HHHcCCCCCCCCce--eeCCccCCchhhcccchHHHHHHHHhccCCCCCeeEEEeCcEeecCCCccc--ccccccEEEEE
Q 007872 426 STMLNRQTDESTAV--VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDV--GASCRRRLAAL 501 (586)
Q Consensus 426 ~~~l~~~~~~~~~v--l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~~lFEiG~V~~~~~~~~~--g~~~~~~l~~~ 501 (586)
...-+ +| .+.+ +.. ---|.-.||.-|.+.+-+.++.|+- ..++-|-|++||+++...-+ ..|+..+|-+=
T Consensus 108 ~gKYG--Ed-skLiYdlkD-QGGEl~SLRYDLTVPfARylAmNki--~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFD 181 (518)
T KOG1936|consen 108 TGKYG--ED-SKLIYDLKD-QGGELCSLRYDLTVPFARYLAMNKI--TSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFD 181 (518)
T ss_pred hhhcc--cc-cceeEehhh-cCCcEEEeecccccHHHHHHHHccc--ccceeeeEEEEEeccCchhhchhhhhhhccCcc
Confidence 32221 11 1223 322 2235567999999999999999943 34899999999998876322 23566677666
Q ss_pred EcCC----CCCHHHHHHHHHHHHHHhCCC
Q 007872 502 YCGA----NSGFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 502 ~~~~----~~~f~~ikg~le~ll~~lgi~ 526 (586)
++|. ..++ +.-+++..+|..|++.
T Consensus 182 IAG~~d~M~pda-E~lkiv~e~L~~l~Ig 209 (518)
T KOG1936|consen 182 IAGQFDPMIPDA-ECLKIVVEILSRLGIG 209 (518)
T ss_pred ccccCCCCCchH-HHHHHHHHHHhhcCcc
Confidence 6764 2344 4555667788888886
No 107
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=80.85 E-value=12 Score=41.30 Aligned_cols=108 Identities=14% Similarity=0.091 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCCee
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~~ 474 (586)
..+.+.+|+.|...||.||-|..|++..- +.+.+++ +.. . .....||+|---- ++.+... + --|
T Consensus 140 s~i~~~iR~ff~~~gf~EV~TP~L~~~~~--------eg~~~~f~~~~-~-~~~~~L~~Spql~-~q~l~~~---g-~~r 204 (437)
T PRK05159 140 SEVLRAFREFLYENGFTEIFTPKIVASGT--------EGGAELFPIDY-F-EKEAYLAQSPQLY-KQMMVGA---G-FER 204 (437)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCcccccCC--------CCCcceEeEEe-c-CCceEecCCHHHH-HHHHHhc---C-CCc
Confidence 45778899999999999999999975321 0112233 321 1 1233577664432 3333321 1 148
Q ss_pred EEEeCcEeecCCCc-ccccccccEEEEEEcCCCCC-HHHHHHHHHHHH
Q 007872 475 IYEVGDVVLLDEKK-DVGASCRRRLAALYCGANSG-FELIHCLVDRIM 520 (586)
Q Consensus 475 lFEiG~V~~~~~~~-~~g~~~~~~l~~~~~~~~~~-f~~ikg~le~ll 520 (586)
+||||++|+.++.. ..+..|..++-+=.+. .+ +.++-..++.++
T Consensus 205 Vf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~--~~~~~~lm~~~e~lv 250 (437)
T PRK05159 205 VFEIGPVFRAEEHNTSRHLNEYTSIDVEMGF--IDDHEDVMDLLENLL 250 (437)
T ss_pred EEEEeceeeCCCCCCcccchhhheeeeeeee--cccHHHHHHHHHHHH
Confidence 99999999866543 1233455555442232 23 666555555444
No 108
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=79.86 E-value=2.4 Score=46.68 Aligned_cols=114 Identities=14% Similarity=0.103 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCCee
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~~ 474 (586)
.+..+.+|+.|-..||-||-|..|.+-.-.. ..+..+ --|-+..|+ +||-+. -|. |++=+--+. -|
T Consensus 184 s~ii~~iR~fl~~~gFlEVETP~lq~i~GGA-------~ArPF~ThhNald~dl-yLRIAp--ELy--LKRliVGG~-er 250 (502)
T COG1190 184 SKIIRAIREFLDDRGFLEVETPMLQPIPGGA-------AARPFITHHNALDMDL-YLRIAP--ELY--LKRLIVGGF-ER 250 (502)
T ss_pred HHHHHHHHHHHHHCCCeEeccccccccCCCc-------ccccceeeecccCCce-EEeecc--HHH--HHHHHhcCc-hh
Confidence 4567889999999999999999887643111 013345 667777665 566543 221 111111122 48
Q ss_pred EEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHhC
Q 007872 475 IYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIG 524 (586)
Q Consensus 475 lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~lg 524 (586)
+||||++|+...-+.++..+...+-+ .-.-+++.|+..+.+.+++.+-
T Consensus 251 VfEIgr~FRNEGid~tHNPEFTmlE~--Y~AYaDy~D~m~ltE~Li~~~a 298 (502)
T COG1190 251 VFEIGRNFRNEGIDTTHNPEFTMLEF--YQAYADYEDLMDLTEELIKELA 298 (502)
T ss_pred heeeccccccCCCccccCcchhhHHH--HHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999865543344334333322 1113578898888888877653
No 109
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=79.01 E-value=18 Score=41.38 Aligned_cols=112 Identities=14% Similarity=0.139 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCceeeCC-ccCCchhhcccchHHHHHHHHhccCCCCCe
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNP-RTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~vl~NP-~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~ 473 (586)
..++.+.+|+.|...||.|+-|..|+.... .+..+.++... ...++-.|++| |.|.+-+.- ..+. -
T Consensus 144 Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~--------ega~~f~v~~~~~~~~~~~L~qS--pql~kq~l~--~~g~-~ 210 (588)
T PRK00476 144 RSKVTSAIRNFLDDNGFLEIETPILTKSTP--------EGARDYLVPSRVHPGKFYALPQS--PQLFKQLLM--VAGF-D 210 (588)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecCCC--------CCCccceecccccCCceeecCCC--HHHHHHHHH--hccc-C
Confidence 346788999999999999999999985421 01111112211 12233346655 445443211 0111 5
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHH
Q 007872 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (586)
Q Consensus 474 ~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~ 521 (586)
|+|+||++|+.++.......|..++-+=.+. +++.++-.++|.++.
T Consensus 211 rvfqi~~~FR~E~~~~~r~~EFt~le~e~af--~~~~dvm~~~E~li~ 256 (588)
T PRK00476 211 RYYQIARCFRDEDLRADRQPEFTQIDIEMSF--VTQEDVMALMEGLIR 256 (588)
T ss_pred ceEEEeceeecCCCCCCcCcccccceeeecC--CCHHHHHHHHHHHHH
Confidence 8999999998765322112245555432233 467887777776664
No 110
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=78.86 E-value=13 Score=41.28 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-ee--C-C----ccCCchhhcccchHHHHHHHHhcc
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VG--N-P----RTSDFEVVRTTLMPGILKTIGHNK 467 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~--N-P----~s~e~~~lR~sLlpgLL~~l~~N~ 467 (586)
..+.+.+|+.|...||.|+-|..|++..- + .+.+.+ +. | + .-..-..|++| |.|.+-+..
T Consensus 140 s~i~~~~r~~~~~~gf~eV~TP~l~~~~~--e------g~~~~F~v~~~~~~~~~~~~~~~~yL~~S--pql~lq~l~-- 207 (453)
T TIGR00457 140 NALSQAIHRYFQENGFTWVSPPILTSNDC--E------GAGELFRVSTDGIDFSQDFFGKEAYLTVS--GQLYLETYA-- 207 (453)
T ss_pred HHHHHHHHHHHHHCCCEEecCCeEeecCC--C------CCCCceEecccccccchhccCCccccccC--HHHHHHHHh--
Confidence 45788899999999999999999986431 0 011223 32 1 0 11122357776 444443321
Q ss_pred CCCCCeeEEEeCcEeecCCCc-ccccccccEEEEEEcCCCCCHHHHHHHHHHHHH
Q 007872 468 DHPKPIKIYEVGDVVLLDEKK-DVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (586)
Q Consensus 468 ~~~~~~~lFEiG~V~~~~~~~-~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~ 521 (586)
.+. -|+||||.+|+.++.. ..+..|..++-+=.+. +++.++-.+++.++.
T Consensus 208 -~g~-~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~--~~~~dvm~~~E~lv~ 258 (453)
T TIGR00457 208 -LAL-SKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAF--ANLNDLLQLAETLIK 258 (453)
T ss_pred -hcc-cCceEeeeccccCCCCCCcCcchhccceeeeec--CCHHHHHHHHHHHHH
Confidence 122 5899999999876542 1333445555432222 357776666665554
No 111
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=77.87 E-value=8.1 Score=47.42 Aligned_cols=110 Identities=16% Similarity=0.178 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-e-eCCccCCchhhcccchHHHH-HHHHhccCCCCCe
Q 007872 397 EFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-V-GNPRTSDFEVVRTTLMPGIL-KTIGHNKDHPKPI 473 (586)
Q Consensus 397 ~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l-~NP~s~e~~~lR~sLlpgLL-~~l~~N~~~~~~~ 473 (586)
++.+.+|+.|...||.||-|..|++..- .. .-++. . .|-...+ -+||.| |.|. |.+.- .+. -
T Consensus 775 ~i~~~iR~fl~~~gFlEVeTPiL~~~~g--Ga------~a~pF~t~~~~~~~~-~yLriS--PELylKrLiv---gG~-e 839 (1094)
T PRK02983 775 AVVRAVRETLVARGFLEVETPILQQVHG--GA------NARPFVTHINAYDMD-LYLRIA--PELYLKRLCV---GGV-E 839 (1094)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEeeccCC--Cc------ccceeEeeecCCCcc-chhhcC--hHHHHHHHHh---ccc-C
Confidence 4567899999999999999999985421 00 01112 1 2332222 367766 4443 33321 111 5
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHh
Q 007872 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (586)
Q Consensus 474 ~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~l 523 (586)
|+||||++|+.++.+.++..|..++-+=.+ -.++.++-.++|.++..+
T Consensus 840 rVFEIg~~FRnE~~~~rHnpEFTmLE~y~a--~~dy~d~m~l~E~li~~i 887 (1094)
T PRK02983 840 RVFELGRNFRNEGVDATHNPEFTLLEAYQA--HADYDTMRDLTRELIQNA 887 (1094)
T ss_pred ceEEEcceecCCCCCCCccccccchhhhhh--cCCHHHHHHHHHHHHHHH
Confidence 899999999877654344445555543112 258999888888887654
No 112
>PLN02903 aminoacyl-tRNA ligase
Probab=76.50 E-value=22 Score=41.05 Aligned_cols=112 Identities=15% Similarity=0.144 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHH-CCceEEecccccChHHHHHHcCCCCCCCCceeeCCc-cCCchhhcccchHHHHHHHHhccCCCCC
Q 007872 395 LNEFSDLMRLEIAM-NGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPR-TSDFEVVRTTLMPGILKTIGHNKDHPKP 472 (586)
Q Consensus 395 ~~~~~~~lr~~l~~-~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~vl~NP~-s~e~~~lR~sLlpgLL~~l~~N~~~~~~ 472 (586)
..++.+.+|+.|.. .||.|+-|..|++... ....+.++.... ..++-.|++| |.|.+-+.- ..+.
T Consensus 206 Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~--------eGardf~v~~~~~~g~~y~L~qS--PQlykQ~Lm--~~G~- 272 (652)
T PLN02903 206 RHRVVKLIRRYLEDVHGFVEIETPILSRSTP--------EGARDYLVPSRVQPGTFYALPQS--PQLFKQMLM--VSGF- 272 (652)
T ss_pred HHHHHHHHHHHHHhcCCeEEEECCeeccCCC--------CCCcccEEeeecCCCcccccCCC--HHHHHHHHH--hccC-
Confidence 34678889999996 9999999999985431 011122222221 1223346655 555544321 1111
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHH
Q 007872 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (586)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~ 521 (586)
-|+|+||++|+.++.......|..++-+=.+. .++.++-.++|.++.
T Consensus 273 ~RvFqIa~~FR~E~~~t~RhpEFTqLE~E~sf--~d~~dvm~~~E~li~ 319 (652)
T PLN02903 273 DRYYQIARCFRDEDLRADRQPEFTQLDMELAF--TPLEDMLKLNEDLIR 319 (652)
T ss_pred CcEEEEehhhccCCCCCCcccceeeeeeeecC--CCHHHHHHHHHHHHH
Confidence 58999999998665432222344455432233 478888888887765
No 113
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=66.07 E-value=17 Score=41.45 Aligned_cols=95 Identities=15% Similarity=0.166 Sum_probs=64.3
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCceeeCCccC-CchhhcccchHHHHHHHHhccC-
Q 007872 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTS-DFEVVRTTLMPGILKTIGHNKD- 468 (586)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~vl~NP~s~-e~~~lR~sLlpgLL~~l~~N~~- 468 (586)
+..-.+.+.+-+|..+...||+||.|..+.+.+.-........-.++.... .+. +-=.+|+.--||.+...+.-.+
T Consensus 219 G~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~--~~~~~~~~lKpmNCpgh~~ifk~~~~S 296 (589)
T COG0441 219 GATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLT--ESDDREYALKPMNCPGHILIFKSGLRS 296 (589)
T ss_pred cccHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhccccceee--ccCChhheeeeccCHhHHHHHhcCCcc
Confidence 445567789999999999999999999888776421111111001222211 111 2237999999999999887765
Q ss_pred -CCCCeeEEEeCcEeecCCC
Q 007872 469 -HPKPIKIYEVGDVVLLDEK 487 (586)
Q Consensus 469 -~~~~~~lFEiG~V~~~~~~ 487 (586)
|..|+|++|.|.|++...+
T Consensus 297 YR~LP~r~~E~g~v~R~E~S 316 (589)
T COG0441 297 YRELPLRLAEFGYVYRYEKS 316 (589)
T ss_pred eeccchhhhhcceeecccCc
Confidence 3468999999998876554
No 114
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=64.09 E-value=19 Score=38.75 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCCee
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~~ 474 (586)
......+|+.|...||.|+.|.-+++... +.+.+.. +.--+..- +|- --|.|-+..+---.. -|
T Consensus 232 ~gvc~~FRe~L~~kgF~EIhTpKli~asS--------EGGanvF~v~Yfk~~A--~LA--QSPQLyKQMaI~gdf---~r 296 (533)
T KOG0556|consen 232 AGVCFAFREYLRSKGFVEIHTPKLIGASS--------EGGANVFRVSYFKQKA--YLA--QSPQLYKQMAICGDF---ER 296 (533)
T ss_pred HHHHHHHHHHHHhcCcceecccccccccC--------CCCceeEEEEeccCcc--hhh--cChHHHHHHHHhcch---hh
Confidence 34678899999999999999999987542 1112223 54443332 332 237777766543222 58
Q ss_pred EEEeCcEeecCCC
Q 007872 475 IYEVGDVVLLDEK 487 (586)
Q Consensus 475 lFEiG~V~~~~~~ 487 (586)
+||||.||+..++
T Consensus 297 VyeIGpVfRAEdS 309 (533)
T KOG0556|consen 297 VYEIGPVFRAEDS 309 (533)
T ss_pred eeeecceeecccc
Confidence 9999999987654
No 115
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=63.82 E-value=27 Score=37.73 Aligned_cols=128 Identities=13% Similarity=0.085 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP 472 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~ 472 (586)
....+.++++..+...||..|.|..+---+.. ..+.-.....+.+ +.+..++. -+||+-+.+.+-...+.-... .|
T Consensus 19 ~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~-l~~~g~~l~~~~f~l~d~~g~~-l~LRpD~T~pVaR~~~~~~~~-~P 95 (390)
T COG3705 19 RKEEIRDQLLALFRAWGYERVETPTLEPADPL-LDGAGEDLRRRLFKLEDETGGR-LGLRPDFTIPVARIHATLLAG-TP 95 (390)
T ss_pred hHHHHHHHHHHHHHHhCCccccccccchhhhh-hhccchhhhhhheEEecCCCCe-EEecccccHHHHHHHHHhcCC-CC
Confidence 44568899999999999999999988765432 2221111114567 99999988 899999999999999887665 79
Q ss_pred eeEEEeCcEeecCCCcccccc-cccEEEEEEcCC---CCCHHHHHHHHHHHHHHhCCC
Q 007872 473 IKIYEVGDVVLLDEKKDVGAS-CRRRLAALYCGA---NSGFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~g~~-~~~~l~~~~~~~---~~~f~~ikg~le~ll~~lgi~ 526 (586)
.|+---|+||+.... ..|.. |..+.++=.-|. .++.+-+ .+.-..|..+|+.
T Consensus 96 ~Rl~Y~G~Vfr~~~~-~~g~~~Ef~QaGiEllG~~~~~ADaEvi-~la~~~L~~~gl~ 151 (390)
T COG3705 96 LRLSYAGKVFRAREG-RHGRRAEFLQAGIELLGDDSAAADAEVI-ALALAALKALGLA 151 (390)
T ss_pred ceeeecchhhhcchh-ccCcccchhhhhhHHhCCCcchhhHHHH-HHHHHHHHHcCCc
Confidence 999999999987732 22333 555554322232 3455433 3333445556654
No 116
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=63.65 E-value=58 Score=31.72 Aligned_cols=101 Identities=16% Similarity=0.184 Sum_probs=67.6
Q ss_pred ccCCceEEEEecccChhhHHHHHHHHHHHHHHhhcCCceeeeEEEEeeCCceeeecCCCceEEEeehhHHhhhcCCcCCH
Q 007872 247 TLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEA 326 (586)
Q Consensus 247 t~~T~nI~iE~a~~D~~~~~~~l~~~~~~~~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~~~lG~~l~~ 326 (586)
.-...++.|++-|.+. .+..+...+-.+..+.-+. . + .....+++++.|.+-.|..+++
T Consensus 30 ~~k~n~l~I~i~G~~~-eike~~~~Ik~~~~~vr~k-~----------------~---~~g~~~y~l~~i~r~a~~~vp~ 88 (190)
T PF09840_consen 30 EVKGNSLKIEIQGYEK-EIKEAIRRIKELVRRVRSK-Y----------------N---KRGLYRYSLDDIFREAGYPVPP 88 (190)
T ss_pred EEeCCEEEEEEecChH-HHHHHHHHHHHHHHHHHHH-h----------------c---cCCceEEcHHHHHHHcCCCCCH
Confidence 3344788999999887 4444444333333322110 0 0 1234677889999999999999
Q ss_pred HHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCcchhHhHHHHhhC
Q 007872 327 EEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYG 378 (586)
Q Consensus 327 ~~i~~~L~~Lg~~~~~~~~~~~~~~l~V~vP~~R~DI~~~~DliEEIar~yG 378 (586)
+-+.+.|+.+|+++...++ . +...+| +.--.+++|++.++|-
T Consensus 89 d~L~~~L~~~G~~ae~~~~---~--i~T~a~-----~eev~~l~~~Lse~~~ 130 (190)
T PF09840_consen 89 DLLVDALKLLGYKAEYRED---V--IKTDAP-----LEEVVELAERLSEIYK 130 (190)
T ss_pred HHHHHHHHhCCCeeEEeCC---e--EEecCC-----HHHHHHHHHHHHHHHH
Confidence 9999999999999987532 3 554433 3455678889888885
No 117
>PLN02221 asparaginyl-tRNA synthetase
Probab=62.92 E-value=59 Score=37.16 Aligned_cols=28 Identities=18% Similarity=0.095 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChH
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSK 423 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~ 423 (586)
..+.+.+|+.|...||.|+-|..+++..
T Consensus 175 S~i~~aiR~ff~~~gFiEI~TP~Lt~s~ 202 (572)
T PLN02221 175 NALAFATHSFFQEHSFLYIHTPIITTSD 202 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeecccc
Confidence 4577889999999999999999998764
No 118
>PF13592 HTH_33: Winged helix-turn helix
Probab=61.30 E-value=7.5 Score=30.20 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=25.0
Q ss_pred hHHhhhcCCcCCHHHHHHHHHhcCCeEE
Q 007872 314 SYINHTIGVSLEAEEVTSLLNRMQLHAE 341 (586)
Q Consensus 314 ~~i~~~lG~~l~~~~i~~~L~~Lg~~~~ 341 (586)
..|.+..|+.++...+-++|++|||...
T Consensus 12 ~~I~~~fgv~ys~~~v~~lL~r~G~s~~ 39 (60)
T PF13592_consen 12 AYIEEEFGVKYSPSGVYRLLKRLGFSYQ 39 (60)
T ss_pred HHHHHHHCCEEcHHHHHHHHHHcCCccc
Confidence 5688889999999999999999999754
No 119
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=54.42 E-value=1.3e+02 Score=34.63 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChH
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSK 423 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~ 423 (586)
...+...+|+.|...||.|+-|..+++..
T Consensus 218 Rs~l~~a~r~ff~~~gF~eI~TPiit~s~ 246 (586)
T PTZ00425 218 RNALAIATHLFFQSRGFLYIHTPLITTSD 246 (586)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCeecccC
Confidence 34577889999999999999999998764
No 120
>PLN02603 asparaginyl-tRNA synthetase
Probab=54.35 E-value=1.1e+02 Score=34.93 Aligned_cols=28 Identities=25% Similarity=0.169 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccCh
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSS 422 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~ 422 (586)
..++...+|+.|...||.||-|..+++.
T Consensus 229 RS~i~~air~ff~~~gF~eV~TPiLt~s 256 (565)
T PLN02603 229 RNALAYATHKFFQENGFVWVSSPIITAS 256 (565)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeccc
Confidence 3467888999999999999999999875
No 121
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=52.30 E-value=1.4e+02 Score=32.75 Aligned_cols=125 Identities=15% Similarity=0.155 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHH----HHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccC
Q 007872 394 ALNEFSDLMRLEI----AMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD 468 (586)
Q Consensus 394 ~~~~~~~~lr~~l----~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~ 468 (586)
+.-.+.+.|.+.| +..||+|+++..++..+..+.....+.-.++.. +.++ .-.|+|.-=-.+ +|.+
T Consensus 172 ~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~~--------~~~LipTaEvpl-~~l~ 242 (429)
T COG0172 172 KGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDP--------DLYLIPTAEVPL-TNLH 242 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcccceEecCC--------CEEEEecchhhh-HHhh
Confidence 3345555555544 588999999999999988766544443224455 7777 335555432222 2222
Q ss_pred C-------CCCeeEEEeCcEeecCCCc----cccc---ccccEEEEE-EcCCCC---CHHHHHHHHHHHHHHhCCCC
Q 007872 469 H-------PKPIKIYEVGDVVLLDEKK----DVGA---SCRRRLAAL-YCGANS---GFELIHCLVDRIMEVIGTPF 527 (586)
Q Consensus 469 ~-------~~~~~lFEiG~V~~~~~~~----~~g~---~~~~~l~~~-~~~~~~---~f~~ikg~le~ll~~lgi~~ 527 (586)
+ ..|++++-.+.+|+....+ ..|. .+..++-.+ ++.+.. .++.+.+..+.++..|++++
T Consensus 243 ~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeLPy 319 (429)
T COG0172 243 RDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELELPY 319 (429)
T ss_pred cccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 2 2589999999999876543 1221 233444433 344433 36789999999999999985
No 122
>KOG2472 consensus Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=49.46 E-value=28 Score=38.56 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=53.9
Q ss_pred EechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhhHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHHHHH
Q 007872 5 SVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIAQA 84 (586)
Q Consensus 5 ~~~~~~l~~~~g~~~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiARe 84 (586)
.++-+.+...+|.+++.+++..+++++=+..+-+.+ + -+++.|+|-|+|.+-.=-|+-+
T Consensus 310 ~~~~~~in~~~g~~l~~~~~~~~l~RM~L~a~v~~~--------------------~-~l~v~iPptraDIlHaCDI~ED 368 (578)
T KOG2472|consen 310 TMSIQAINFAIGLNLTIEEQAYYLTRMYLKAKVIGN--------------------G-NLEVKIPPTRADILHACDIVED 368 (578)
T ss_pred eeehhhhhhhhccCCCHHHHHHHHhhhheeeEecCC--------------------C-ceEEecCCchhhhhhhhhhhhH
Confidence 355677888999999999999999888777754332 1 2999999999999999999999
Q ss_pred HHHHcC
Q 007872 85 LRVFNK 90 (586)
Q Consensus 85 l~a~~g 90 (586)
+|.-+|
T Consensus 369 ~aIAyG 374 (578)
T KOG2472|consen 369 AAIAYG 374 (578)
T ss_pred HHHHhc
Confidence 988777
No 123
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=45.22 E-value=78 Score=34.79 Aligned_cols=76 Identities=20% Similarity=0.227 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHH-HhccCCCCC
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTI-GHNKDHPKP 472 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l-~~N~~~~~~ 472 (586)
...+.+.+|+.+...||.|+-|..+++... +.+.+.+ +.---. + ..| +--|.|-+-+ +.-.
T Consensus 137 rs~i~~a~~eff~~~gF~eV~tP~i~~~~~--------EGg~elF~v~yf~~-~-a~L--tqS~QLyke~~~~al----- 199 (435)
T COG0017 137 RSSILRAIREFFYENGFTEVHTPIITASAT--------EGGGELFKVDYFDK-E-AYL--TQSPQLYKEALAAAL----- 199 (435)
T ss_pred HHHHHHHHHHHHHhCCcEEecCceEeccCC--------CCCceeEEEeecCc-c-eEE--ecCHHHHHHHHHHHh-----
Confidence 345778899999999999999999998653 1112233 311111 1 122 3334443322 2211
Q ss_pred eeEEEeCcEeecCCC
Q 007872 473 IKIYEVGDVVLLDEK 487 (586)
Q Consensus 473 ~~lFEiG~V~~~~~~ 487 (586)
-|+||+|.+|+..++
T Consensus 200 ~rVf~igP~FRAE~s 214 (435)
T COG0017 200 ERVFTIGPTFRAEKS 214 (435)
T ss_pred CceEEecCceecCCC
Confidence 479999999987654
No 124
>PLN02532 asparagine-tRNA synthetase
Probab=44.19 E-value=1.4e+02 Score=34.49 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChH
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSK 423 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~ 423 (586)
..++...+|+.|...||.|+-|..|++..
T Consensus 238 RS~i~~aiR~ff~~~GFiEV~TPiLT~s~ 266 (633)
T PLN02532 238 RSALTHATHTFFQDHGFLYVQVPIITTTD 266 (633)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCeecccC
Confidence 34678889999999999999999998764
No 125
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=41.64 E-value=44 Score=33.80 Aligned_cols=90 Identities=16% Similarity=0.216 Sum_probs=58.6
Q ss_pred CcCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCC-C--cccCCcchhHhHHHHhhCcCCCCCCCCCCC-----CCC
Q 007872 322 VSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPT-R--SDVLHPCDVMEDVAIAYGYNNIPKRKPASV-----KPL 393 (586)
Q Consensus 322 ~~l~~~~i~~~L~~Lg~~~~~~~~~~~~~~l~V~vP~~-R--~DI~~~~DliEEIar~yGydni~~~~p~~~-----~~~ 393 (586)
..++.++|.++.+.+|+........ . ++.-.+|.- + .+-+..++-+|+..+..||..+--..-... .+.
T Consensus 142 ~~l~K~eIr~la~~~gl~~~~~ps~--~-Cl~sr~~~g~~it~~~l~~v~~~E~~l~~~g~~~~rvr~~~~~a~ie~~~~ 218 (252)
T TIGR00268 142 FGITKKEIREIAKSLGISFPDKPSE--A-CLASRFPFGREIDEEKLKMVDEAEEVLRNAGVGQVRVRNYDNLAVIEVPED 218 (252)
T ss_pred cCCCHHHHHHHHHHcCCCccCCCCC--C-ceEeecCCCCcCCHHHHHHHHHHHHHHHHcCCCeEEEEecCCeEEEEECHH
Confidence 3578999999999999986422211 2 144444433 2 245667999999999999988754432211 112
Q ss_pred hHHHH---HHHHHHHHHHCCceEE
Q 007872 394 ALNEF---SDLMRLEIAMNGFTEV 414 (586)
Q Consensus 394 ~~~~~---~~~lr~~l~~~Gf~Ev 414 (586)
...++ ...+.+.|..+||.-|
T Consensus 219 ~~~~~~~~~~~i~~~~~~~gf~~v 242 (252)
T TIGR00268 219 ELSKLLNEAEEVRDKFKDIGFRKV 242 (252)
T ss_pred HHHHHHhhHHHHHHHHHHcCCCeE
Confidence 22222 3668889999999877
No 126
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.38 E-value=4.6e+02 Score=29.56 Aligned_cols=169 Identities=18% Similarity=0.156 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCC-CCCCce-eeCCccCCchhhcccchHHHHHHHHhcc--CC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNK--DH 469 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~-~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~--~~ 469 (586)
-.++..+.+|+.|-..|-+|++-..|.+ .+..+--.+-. -+.+.. |.+=- .+-=+|||+-=--+-...+.-. ++
T Consensus 49 v~~kI~~iir~em~~~G~~Evl~P~L~p-~eLwkEs~r~~~f~~El~~v~drg-~~~l~L~PTsEe~it~~~~~~i~SYk 126 (500)
T COG0442 49 VLEKIENIIREEMDKIGAQEVLFPTLIP-AELWKESGRWEGFGPELFRVKDRG-DRPLALRPTSEEVITDMFRKWIRSYK 126 (500)
T ss_pred HHHHHHHHHHHHHHhcCceEEechhcCH-HHHHHHhChhhhcchhhEEEEccC-CceeeeCCCcHHHHHHHHHHHhhhhh
Confidence 3567889999999999999999999998 44332212111 112233 44433 2333566654322222222222 34
Q ss_pred CCCeeEEEeCcEeecCCCccc-cc-ccccEEEEEEcCC---CC-------CHHHHHHHHHHHHHHhCCCCCCCCCCccEE
Q 007872 470 PKPIKIYEVGDVVLLDEKKDV-GA-SCRRRLAALYCGA---NS-------GFELIHCLVDRIMEVIGTPFVPVGDDTGYY 537 (586)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~~-g~-~~~~~l~~~~~~~---~~-------~f~~ikg~le~ll~~lgi~~~~~~~~~~~~ 537 (586)
.+|++++-|..+|+-.. ..+ |. |.+ -+++... .+ .+..+..+=..++.++|+. +.
T Consensus 127 dLPl~lYQi~~kfRdE~-rpr~gllR~R---EF~mkdaySfh~~~e~a~~~y~~~~~~Y~~if~~i~l~---------~~ 193 (500)
T COG0442 127 DLPLKLYQIQSKFRDEK-RPRFGLLRGR---EFLMKDAYSFHADEEDAEETYEKMLDAYSRIFLRLPLI---------FG 193 (500)
T ss_pred hCCcceeeeeeEEeccc-cCCCCccchh---eeeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCce---------EE
Confidence 57999999999996321 111 10 111 1112111 12 3445555666677777765 33
Q ss_pred EEecCCCCccCCc---eEEEEE-CCE--EEEEEEEeCHHHHHHC-CCC
Q 007872 538 IQRSDEPEFLPGR---QASITH-KGK--HVGTFGIVHPEVMSSF-EQS 578 (586)
Q Consensus 538 ~~~~~~~~f~pgr---~A~I~~-~g~--~iG~~GelhP~vl~~~-~l~ 578 (586)
..+.+ ..|.-|. .-.++. +|. .||+.-.+--.+.++| +++
T Consensus 194 ~~~ad-~g~~Gg~~S~eF~~l~pd~ge~qi~ts~~y~aN~e~a~~~~~ 240 (500)
T COG0442 194 PVPAD-EGFIGGSYSHEFEALMPDGGEDQIATSHHYGANFEKAFIDIK 240 (500)
T ss_pred eeccc-CCCCCCccceEEEEEccCCCccEEEEecchHHhHHHhccCCC
Confidence 33333 2333221 223333 332 5777666557777777 443
No 127
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.46 E-value=2.7e+02 Score=30.64 Aligned_cols=155 Identities=12% Similarity=0.140 Sum_probs=86.3
Q ss_pred HhHHHHhhCcCCCCCCCCCCC---------CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-
Q 007872 370 MEDVAIAYGYNNIPKRKPASV---------KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV- 439 (586)
Q Consensus 370 iEEIar~yGydni~~~~p~~~---------~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v- 439 (586)
.+++++..||=+...-.-.+. ...-.+.+.+--=+.+...||.=+.+..++..+...+....+....+.+
T Consensus 154 ~~~l~~~~~~~~~~~~a~vsG~r~Yyl~g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y 233 (455)
T KOG2509|consen 154 HDELVRALGFIDLERGAKVSGHRGYYLKGAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYY 233 (455)
T ss_pred HHHHHHhcccccccchhhcccccceEEcCHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHhccCcCCCcceEE
Confidence 467788888844432111111 1112233445555678899999999999999887554433322112333
Q ss_pred eeCCccCCchhhcccchHHHHHHHHhccC---CCCCeeEEEeCcEeecCCCc----cccc---ccccEE-EEEEcCCCCC
Q 007872 440 VGNPRTSDFEVVRTTLMPGILKTIGHNKD---HPKPIKIYEVGDVVLLDEKK----DVGA---SCRRRL-AALYCGANSG 508 (586)
Q Consensus 440 l~NP~s~e~~~lR~sLlpgLL~~l~~N~~---~~~~~~lFEiG~V~~~~~~~----~~g~---~~~~~l-~~~~~~~~~~ 508 (586)
..-+- .+.--.=||=.| |.++-.|.- ...|+|+--++++|+....+ ..|. .+..++ -++++++..+
T Consensus 234 ~ld~~-~~~~LiaTaE~p--lAa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~Pe~S 310 (455)
T KOG2509|consen 234 VLDGG-DEKYLIATAEQP--LAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGPEDS 310 (455)
T ss_pred eecCC-ccceeEeeccch--hhhhhcccccccccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCcchh
Confidence 33333 111112222222 233333322 24689999999999875421 1121 122222 2356776444
Q ss_pred ---HHHHHHHHHHHHHHhCCCC
Q 007872 509 ---FELIHCLVDRIMEVIGTPF 527 (586)
Q Consensus 509 ---f~~ikg~le~ll~~lgi~~ 527 (586)
|+++.+.-+.++..||+++
T Consensus 311 ~~~~eEmi~~~eef~qsLgip~ 332 (455)
T KOG2509|consen 311 WEMLEEMINNQEEFYQSLGLPY 332 (455)
T ss_pred HHHHHHHHHHHHHHHHHhCCce
Confidence 7889999999999999984
No 128
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.15 E-value=2.5e+02 Score=30.14 Aligned_cols=121 Identities=22% Similarity=0.326 Sum_probs=72.2
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCC-CCCCce-e---------eCCccCCchhhcccchHHH
Q 007872 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DESTAV-V---------GNPRTSDFEVVRTTLMPGI 459 (586)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~-~~~~~v-l---------~NP~s~e~~~lR~sLlpgL 459 (586)
.....+++.|.|+..|.+.|-+++--..+.+.+ ..+.-++.. .+.+.+ + .-|--+|. +--|
T Consensus 51 g~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~-LWekTgRw~~~gsEl~rl~Dr~gkq~cL~pThEE~-------iT~l 122 (457)
T KOG2324|consen 51 GLRVLNKLCRLLDNEMQSGGAQKISLPILSSKE-LWEKTGRWDAMGSELFRLHDRKGKQMCLTPTHEED-------ITAL 122 (457)
T ss_pred hHHHHHHHHHHHHHHHHhccCeeEeecccChHH-HHHhcCcccccchhheEeeccCCCEeccCCchHHH-------HHHH
Confidence 445578899999999999999998777776665 444433321 111222 2 23333221 1223
Q ss_pred HHHHHhccCCCCCeeEEEeCcEeecCCCcccccccccEEEEEEcCC-----------------CCCHHHHHHHHHHHHHH
Q 007872 460 LKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGA-----------------NSGFELIHCLVDRIMEV 522 (586)
Q Consensus 460 L~~l~~N~~~~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~-----------------~~~f~~ikg~le~ll~~ 522 (586)
+.+...=..++.|+++|-||+=|+.+-. .|.+ ++-|+ ..+|..+...-+++|..
T Consensus 123 mat~~~lsykqlPi~vYQigrKfRDElr--------pRfG-LlRgREFlMKDmYsFd~~~etA~qTy~~v~~aY~~iFkq 193 (457)
T KOG2324|consen 123 MATYIPLSYKQLPIRVYQIGRKFRDELR--------PRFG-LLRGREFLMKDMYSFDSDEETAQQTYQLVDQAYDRIFKQ 193 (457)
T ss_pred HHhcCccccccCcEEeeeechhhhhccC--------cccc-chhhHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332224579999999999863211 1111 22222 23577888889999999
Q ss_pred hCCCCC
Q 007872 523 IGTPFV 528 (586)
Q Consensus 523 lgi~~~ 528 (586)
|++++.
T Consensus 194 L~~pfV 199 (457)
T KOG2324|consen 194 LGLPFV 199 (457)
T ss_pred cCCCeE
Confidence 999874
No 129
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=28.79 E-value=1.5e+02 Score=30.86 Aligned_cols=84 Identities=17% Similarity=0.107 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCceeeCCccC--CchhhcccchHHHHHHHHhccCCCC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTS--DFEVVRTTLMPGILKTIGHNKDHPK 471 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~vl~NP~s~--e~~~lR~sLlpgLL~~l~~N~~~~~ 471 (586)
...++.+.+|..++..||.||-|-.|.-.-..-..+..+. .+.+ -|--. .--.|.||-=-.+=+-++.-
T Consensus 18 ~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~--Te~~--~~~~~~~~~l~L~TSPEy~mKrLLAag----- 88 (322)
T COG2269 18 KRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFE--TEFL--GPGGAKGKPLWLHTSPEYHMKRLLAAG----- 88 (322)
T ss_pred HHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeee--eEEe--ccCccccceeeeecCcHHHHHHHHHcc-----
Confidence 3456788999999999999999988754321111110000 0111 11111 11245666544444444432
Q ss_pred CeeEEEeCcEeecCC
Q 007872 472 PIKIYEVGDVVLLDE 486 (586)
Q Consensus 472 ~~~lFEiG~V~~~~~ 486 (586)
.-.+|.+|+||+..+
T Consensus 89 ~~~ifql~kvfRN~E 103 (322)
T COG2269 89 SGPIFQLGKVFRNEE 103 (322)
T ss_pred CCcchhhhHHHhccc
Confidence 246999999997654
No 130
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=22.83 E-value=2.2e+02 Score=31.36 Aligned_cols=78 Identities=8% Similarity=0.096 Sum_probs=50.2
Q ss_pred hhhcccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCcceEEEeCCCCeeeecCcccCCc
Q 007872 164 HDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAH 243 (586)
Q Consensus 164 ~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~VI~D~~~~~lslagIigg~~ 243 (586)
.+.+++..|+..+...+++ +.|++.....+.++++. +.+..+.. .+..|||++++ .+++++|+--+..
T Consensus 350 ~~~~~~~~~l~lR~r~~Gd--~~~~g~~g~KklKk~f~----d~kIP~~~-----R~~iPll~~~~-~iv~v~g~~~~~~ 417 (436)
T PRK10660 350 VRPPRADEAVSVRFKAQGL--LHIVGRNHGRKLKKIWQ----ELGVPPWL-----RDRTPLLFYGE-TLIAAAGVFVTQE 417 (436)
T ss_pred ccccCCCCcEEEEecCCCc--EEECCCCCCchHHHHHH----HcCCCHHH-----hCCCCEEEECC-EEEEEeCEEECcc
Confidence 3667777888887777664 44877543345555553 55554432 35679999766 5999999865566
Q ss_pred ceeccCCceE
Q 007872 244 SAITLKTKNV 253 (586)
Q Consensus 244 s~It~~T~nI 253 (586)
..+.+.+..+
T Consensus 418 ~~~~~~~~~~ 427 (436)
T PRK10660 418 GQAEEGENGV 427 (436)
T ss_pred cccCCCCCce
Confidence 6676555554
Done!