Query 007872
Match_columns 586
No_of_seqs 237 out of 1605
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 12:35:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007872.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007872hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l4g_B Phenylalanyl-tRNA synth 100.0 1E-135 4E-140 1139.6 59.3 577 1-584 1-581 (589)
2 3pco_B Phenylalanyl-tRNA synth 100.0 9E-100 3E-104 870.2 32.5 481 60-584 154-682 (795)
3 2rhq_B Phenylalanyl-tRNA synth 100.0 6.9E-97 2E-101 849.2 46.2 467 60-584 156-683 (795)
4 1b7y_B Phers, protein (phenyla 100.0 3.1E-95 1E-99 831.8 43.7 457 60-584 152-671 (785)
5 2cxi_A Phenylalanyl-tRNA synth 100.0 2.2E-77 7.5E-82 627.0 31.0 341 1-379 1-348 (348)
6 3ica_A Phenylalanyl-tRNA synth 100.0 2E-40 6.7E-45 326.0 15.7 182 394-584 5-205 (213)
7 3ig2_A Phenylalanyl-tRNA synth 100.0 1.8E-40 6.3E-45 326.2 12.7 183 393-584 4-205 (213)
8 2du3_A O-phosphoseryl-tRNA syn 100.0 1.9E-38 6.6E-43 344.4 15.8 220 357-584 10-326 (534)
9 2rhq_A Phenylalanyl-tRNA synth 100.0 1.1E-36 3.9E-41 313.1 20.4 207 364-584 20-255 (294)
10 2du7_A O-phosphoseryl-tRNA syn 100.0 1.2E-29 4.1E-34 275.1 17.6 201 373-584 36-330 (549)
11 2odr_D Phosphoseryl-tRNA synth 100.0 7E-29 2.4E-33 270.6 17.8 196 381-584 49-337 (685)
12 2odr_B Phosphoseryl-tRNA synth 100.0 6.2E-29 2.1E-33 270.7 17.3 186 391-584 63-337 (648)
13 2odr_A Phosphoseryl-tRNA synth 100.0 6.6E-29 2.3E-33 270.6 17.3 196 381-584 49-337 (665)
14 2odr_C Phosphoseryl-tRNA synth 100.0 7.9E-29 2.7E-33 270.8 17.6 196 381-584 49-337 (701)
15 1b7y_A Phers, protein (phenyla 100.0 1.9E-27 6.6E-32 248.4 20.5 194 380-584 84-315 (350)
16 3pco_A Phenylalanyl-tRNA synth 99.9 1.2E-27 4E-32 247.2 14.0 188 379-584 89-295 (327)
17 3qtc_A Pyrrolysyl-tRNA synthet 99.9 6.1E-27 2.1E-31 240.5 18.3 174 391-584 75-256 (290)
18 3l4g_A Phenylalanyl-tRNA synth 99.9 5.6E-27 1.9E-31 253.7 18.1 201 375-584 208-457 (508)
19 3cmq_A Phenylalanyl-tRNA synth 99.9 3.2E-24 1.1E-28 229.3 13.7 188 379-584 27-276 (415)
20 3dsq_A Pyrrolysyl-tRNA synthet 99.9 2.5E-23 8.4E-28 212.9 15.0 180 391-584 69-253 (288)
21 3hj7_A TRNA(Ile)-lysidine synt 97.7 4.9E-05 1.7E-09 69.0 7.1 83 163-255 43-126 (142)
22 3net_A Histidyl-tRNA synthetas 97.5 0.0005 1.7E-08 74.5 12.4 147 377-526 5-178 (465)
23 1z7m_A ATP phosphoribosyltrans 97.5 0.0007 2.4E-08 70.5 13.1 130 394-526 38-173 (344)
24 1wu7_A Histidyl-tRNA synthetas 97.3 0.0018 6.2E-08 69.4 12.9 130 394-526 22-155 (434)
25 3od1_A ATP phosphoribosyltrans 97.2 0.0024 8.3E-08 67.8 13.4 129 395-526 27-159 (400)
26 3rac_A Histidine-tRNA ligase; 97.2 0.0025 8.6E-08 67.0 13.1 130 394-526 39-180 (373)
27 1h4v_B Histidyl-tRNA synthetas 97.2 0.0039 1.3E-07 66.4 14.5 130 394-526 19-157 (421)
28 4e51_A Histidine--tRNA ligase; 97.1 0.0054 1.8E-07 66.4 14.1 132 395-526 49-186 (467)
29 3lc0_A Histidyl-tRNA synthetas 97.0 0.0033 1.1E-07 67.9 11.6 128 395-525 46-178 (456)
30 1qe0_A Histidyl-tRNA synthetas 97.0 0.0021 7.2E-08 68.4 9.7 131 394-526 18-157 (420)
31 1htt_A Histidyl-tRNA synthetas 96.9 0.0056 1.9E-07 65.2 12.3 131 394-525 20-156 (423)
32 4g84_A Histidine--tRNA ligase, 96.5 0.018 6.2E-07 62.0 12.8 128 395-527 31-164 (464)
33 4g85_A Histidine-tRNA ligase, 96.4 0.019 6.7E-07 62.8 12.4 129 394-527 83-217 (517)
34 2i4l_A Proline-tRNA ligase; al 96.3 0.01 3.6E-07 64.0 9.4 130 394-526 69-211 (458)
35 1nyr_A Threonyl-tRNA synthetas 96.3 0.0099 3.4E-07 67.0 9.4 131 394-526 273-416 (645)
36 1nnh_A Asparaginyl-tRNA synthe 96.1 0.082 2.8E-06 53.5 14.6 117 395-524 18-141 (294)
37 3a32_A Probable threonyl-tRNA 96.1 0.022 7.5E-07 61.7 10.8 158 357-525 22-195 (471)
38 2j3l_A Prolyl-tRNA synthetase; 95.8 0.024 8.4E-07 62.8 10.0 131 394-526 49-191 (572)
39 2dq3_A Seryl-tRNA synthetase; 95.8 0.078 2.7E-06 56.5 13.3 128 395-526 175-316 (425)
40 2cxi_A Phenylalanyl-tRNA synth 95.8 0.018 6.2E-07 59.8 8.1 66 3-90 282-347 (348)
41 1evl_A Threonyl-tRNA synthetas 95.7 0.022 7.5E-07 60.3 8.4 152 372-526 5-173 (401)
42 1nj8_A Proline-tRNA synthetase 95.7 0.1 3.6E-06 56.2 13.8 134 394-527 40-189 (459)
43 1ses_A Seryl-tRNA synthetase; 95.5 0.056 1.9E-06 57.6 10.7 129 394-526 168-312 (421)
44 2dq0_A Seryl-tRNA synthetase; 95.3 0.13 4.5E-06 55.3 12.9 128 395-526 196-337 (455)
45 3uh0_A Threonyl-tRNA synthetas 94.9 0.13 4.6E-06 55.3 11.7 133 394-526 66-212 (460)
46 1hc7_A Prolyl-tRNA synthetase; 94.9 0.2 6.9E-06 54.2 12.9 132 394-526 46-193 (477)
47 3err_A Fusion protein of micro 94.7 0.32 1.1E-05 53.3 13.8 128 395-526 278-421 (536)
48 1qf6_A THRRS, threonyl-tRNA sy 94.5 0.049 1.7E-06 61.3 7.1 131 394-526 273-414 (642)
49 3l4g_B Phenylalanyl-tRNA synth 94.5 0.057 1.9E-06 60.1 7.6 70 3-92 306-375 (589)
50 1wle_A Seryl-tRNA synthetase; 94.4 0.34 1.2E-05 52.6 13.2 131 395-526 222-368 (501)
51 3vbb_A Seryl-tRNA synthetase, 94.4 0.27 9.2E-06 53.5 12.3 133 395-527 204-359 (522)
52 3pco_B Phenylalanyl-tRNA synth 94.1 0.086 2.9E-06 60.6 8.2 69 2-92 404-472 (795)
53 2rhq_B Phenylalanyl-tRNA synth 94.1 0.088 3E-06 60.6 8.2 70 3-94 408-477 (795)
54 1b7y_B Phers, protein (phenyla 94.0 0.094 3.2E-06 60.2 8.2 69 3-93 403-471 (785)
55 3lss_A Seryl-tRNA synthetase; 94.0 0.26 8.9E-06 53.2 11.0 130 395-526 211-356 (484)
56 1nj1_A PROR, proline-tRNA synt 93.9 0.22 7.5E-06 54.2 10.6 132 395-527 74-221 (501)
57 1usy_A ATP phosphoribosyltrans 93.2 0.19 6.7E-06 50.2 8.1 112 398-526 6-123 (275)
58 3a2k_A TRNA(Ile)-lysidine synt 93.2 0.11 3.8E-06 55.9 6.6 81 164-254 375-455 (464)
59 1wyd_A Hypothetical aspartyl-t 92.9 0.46 1.6E-05 50.6 10.7 112 394-523 136-249 (429)
60 3ial_A Prolyl-tRNA synthetase; 92.6 0.42 1.4E-05 52.1 10.1 134 394-527 57-206 (518)
61 1x54_A Asparaginyl-tRNA synthe 92.4 0.5 1.7E-05 50.4 10.4 111 394-523 137-250 (434)
62 4hvc_A Bifunctional glutamate/ 91.7 1.6 5.4E-05 47.6 13.4 133 394-527 63-212 (519)
63 3qne_A Seryl-tRNA synthetase, 89.9 0.8 2.7E-05 49.4 8.8 131 395-527 188-334 (485)
64 3a74_A Lysyl-tRNA synthetase; 88.5 2.9 0.0001 45.2 12.1 111 396-523 178-291 (493)
65 1e1o_A Lysyl-tRNA synthetase, 88.2 2.3 7.8E-05 46.2 10.9 111 396-523 187-300 (504)
66 3a5y_A GENX, putative lysyl-tR 87.7 2.2 7.5E-05 44.0 10.0 112 395-522 39-157 (345)
67 3bju_A Lysyl-tRNA synthetase; 87.5 1.9 6.4E-05 47.1 9.8 111 396-523 180-293 (521)
68 4ah6_A Aspartate--tRNA ligase, 87.2 2.9 9.9E-05 46.4 11.1 112 396-523 152-265 (617)
69 3mf2_A BLL0957 protein; aminoa 87.1 1.2 4E-05 45.8 7.4 143 395-547 67-239 (346)
70 3i7f_A Aspartyl-tRNA synthetas 86.9 2.3 7.8E-05 46.6 10.0 108 396-520 248-358 (548)
71 1n9w_A Aspartyl-tRNA synthetas 86.8 1.5 5.2E-05 46.5 8.4 112 395-523 128-241 (422)
72 3nem_A Aspartyl-tRNA synthetas 86.7 3.6 0.00012 43.8 11.3 109 396-521 141-252 (438)
73 4ex5_A Lysine--tRNA ligase; st 86.6 2.2 7.7E-05 46.4 9.8 110 396-522 208-320 (529)
74 1ati_A Glycyl-tRNA synthetase; 85.7 1.5 5.2E-05 47.6 7.9 78 449-527 183-271 (505)
75 1l0w_A Aspartyl-tRNA synthetas 85.5 5.7 0.0002 43.8 12.4 113 396-523 148-261 (580)
76 1c0a_A Aspartyl tRNA synthetas 85.4 6.3 0.00022 43.5 12.8 113 396-523 142-255 (585)
77 2xgt_A Asparaginyl-tRNA synthe 84.8 2.2 7.5E-05 45.4 8.5 110 396-522 136-246 (435)
78 2cja_A Seryl-tRNA synthetase; 84.5 0.96 3.3E-05 49.3 5.6 132 395-526 234-407 (522)
79 2zt5_A Glycyl-tRNA synthetase; 80.3 6 0.00021 44.6 10.2 40 445-485 236-279 (693)
80 1eov_A ASPRS, aspartyl-tRNA sy 77.8 11 0.00038 40.5 11.0 107 396-520 182-292 (487)
81 3m4p_A Ehasnrs, asparaginyl-tR 75.7 8.9 0.00031 40.9 9.4 108 396-521 160-269 (456)
82 1ni5_A Putative cell cycle pro 62.8 9 0.00031 40.5 6.0 80 164-256 348-427 (433)
83 1whz_A Hypothetical protein; a 29.5 1.1E+02 0.0036 23.2 5.7 53 323-379 4-62 (70)
84 3ikl_A DNA polymerase subunit 28.1 51 0.0017 35.1 4.8 79 449-527 147-238 (459)
85 2lxr_A NADH dehydrogenase I su 22.1 56 0.0019 25.5 2.6 35 447-481 5-40 (76)
86 3fn2_A Putative sensor histidi 20.7 78 0.0027 26.4 3.4 26 221-246 50-75 (106)
No 1
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-135 Score=1139.61 Aligned_cols=577 Identities=51% Similarity=0.909 Sum_probs=528.1
Q ss_pred CCeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhhHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHH
Q 007872 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEG 80 (586)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~G 80 (586)
||||+|++++|++++|+++|++||+++||+||+|+|++++|++++.+++|.++. .+.++|++++|++|||||||||++|
T Consensus 1 Mp~i~v~~~~l~~~~g~~~~~~e~~~~~~~~g~e~d~~~~~~~~~~~~~~~~~~-~~~~~d~i~ei~itpNR~D~ls~~G 79 (589)
T 3l4g_B 1 MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKA-AGASDVVLYKIDVPANRYDLLCLEG 79 (589)
T ss_dssp CCEEEEEHHHHHHHHTSCCCTTHHHHHHHHTTCEEEEEEEHHHHHTTTSSCCCC-CSSSSSEEEEEECCTTCSTTSSHHH
T ss_pred CCEEEECHHHHHHHHCCCCCHHHHHHHHHhcCCccccccccchhhhhccccccc-ccCCCCeEEEEecCCChhHHhHHHH
Confidence 999999999999999999999999999999999999999998888888887665 5578999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCceeccCCCCCCcceEEEeecCCCCCCeEEEEEEeccccCCCCccCHHHHHHHHHhcCCCCCcEEE
Q 007872 81 IAQALRVFNKQQEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICRRRTLVA 160 (586)
Q Consensus 81 iARel~a~~g~~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~~s~~~lq~kL~~~~~r~r~~Vd 160 (586)
||||+++++|..+.|.+...... .....+.|++++++.||||+|++||||++++++++||+|||+|||++++|+|++||
T Consensus 80 iARela~~~~~~~~p~~~~~~~~-~~~~~i~v~~~~~~~cp~y~~~vi~~V~~~~~~~~Sp~wlq~rL~~~~~r~~~~Vd 158 (589)
T 3l4g_B 80 LVRGLQVFKERIKAPVYKRVMPD-GKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVA 158 (589)
T ss_dssp HHHHHHHHTTSSCCCCCEEECCS-SCCCEEEECTTTTTTSCEEEEEEECCBCCCHHHHHHHHHHHHHTTTTTTTTTTSEE
T ss_pred HHHHHHHhcCCCCCCCccccCCC-CCceeEEEeecCcccCCeEEEEEEECcCcCccccCCHHHHHHHHHHccCCCceEEe
Confidence 99999999886678888765322 12457888888899999999999999999988888999999999999999999999
Q ss_pred eeehhhcccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCcceEEEeCCCCeeeecCccc
Q 007872 161 IGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIIN 240 (586)
Q Consensus 161 Ign~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~VI~D~~~~~lslagIig 240 (586)
|||||+|+|+|||+|++.++++++|+||+++++|+.+++++++.+|.+|++|+||+++++.||||+|++|.++|||||||
T Consensus 159 Itn~Dldki~g~~~~~~~~~~~~~f~~Ld~~~~l~~~~l~~~~~~~~~~~~y~~ii~~~~~~~vI~D~~~~vlslaGImg 238 (589)
T 3l4g_B 159 IGTHDLDTLSGPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIIN 238 (589)
T ss_dssp EEEEEGGGCCSCEEEEEECSTTCEECBTTCSSCEEHHHHHHHSTTCTTTTTTTTTTCCSSCEEEEECTTCCCCEETTTEE
T ss_pred hhhhhHHHcCCCeEEEEeCCCCcEEEECCCceEecHHHhhhhhcccccccccceecccCCCcEEEEECCCCEEEECCccC
Confidence 99999999999999999998889999999988999999999999999999999999999999999999986689999999
Q ss_pred CCcceeccCCceEEEEecccChhhHHHHHHHHHHHHHHhhcCCceeeeEEEEeeCCceeeecCCCceEEEeehhHHhhhc
Q 007872 241 GAHSAITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTI 320 (586)
Q Consensus 241 g~~s~It~~T~nI~iE~a~~D~~~~~~~l~~~~~~~~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~~~l 320 (586)
|++|+||++||||||||||+|++.+..|+++++++++++|+++++++++++++..|..+.+|.+.+++|.++.++|+++|
T Consensus 239 G~~S~Vt~~T~~V~lE~Ag~D~~~~~~al~~a~~li~e~~gg~~~~e~~~v~~~~g~~~~~p~~~~~~i~l~~~~i~~ll 318 (589)
T 3l4g_B 239 GDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMVRADLINKKV 318 (589)
T ss_dssp BSTTCCCTTCCCEEEEEEESCHHHHHHHHHHHHHHHGGGBTTSSEEECEEEECTTSCEEEECCCCCEEEEEEHHHHHHHH
T ss_pred CccceeeCCCCEEEEEEeeeCHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEecCCceEecccccceEEEecHHHHHHhh
Confidence 99999999999999999999999999999999999999999888899988886546677889888899999999999999
Q ss_pred CCcCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCcchhHhHHHHhhCcCCCCCCCCCCC---CCChHHH
Q 007872 321 GVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV---KPLALNE 397 (586)
Q Consensus 321 G~~l~~~~i~~~L~~Lg~~~~~~~~~~~~~~l~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~---~~~~~~~ 397 (586)
|++++.++|.++|++|||+++...++ +. |.|+||+||.||+|++||||||||+|||||||.++|... ..++.++
T Consensus 319 G~~i~~~~i~~iL~~Lgf~~~~~~~~-~~--~~V~vPs~R~DI~~e~DLiEEVaRiyGYdnIp~tlP~~~~~g~~~~~~~ 395 (589)
T 3l4g_B 319 GIRETPENLAKLLTRMYLKSEVIGDG-NQ--IEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNK 395 (589)
T ss_dssp TCCCCHHHHHHHHHHTTCEEEECSSS-SE--EEEEECSSCTTCCSHHHHHHHHHHHHCGGGSCCCCCCCCCCCCCCHHHH
T ss_pred CCCCCHHHHHHHHHHCCCeEEEcCCC-ce--EEEECCCCccccCCccHHHHHHHHHhCcccCCCcCCCccccCCCCHHHH
Confidence 99999999999999999999764322 35 999999999999999999999999999999999998644 7789999
Q ss_pred HHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCCeeEE
Q 007872 398 FSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIY 476 (586)
Q Consensus 398 ~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~~lF 476 (586)
+.+++|+.|+++||+|++||+|+++++++++++.+.+..++| |+||+|+|+++|||||+||||+++++|++++.|+|+|
T Consensus 396 ~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~vrlF 475 (589)
T 3l4g_B 396 LTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLF 475 (589)
T ss_dssp HHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCEEEE
T ss_pred HHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999999999999999999999999998777887654435679 9999999999999999999999999999987789999
Q ss_pred EeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEE
Q 007872 477 EVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITH 556 (586)
Q Consensus 477 EiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~ 556 (586)
|+|+||+++...+++.++.++++++++|+..+|+++||+++++|+.+|++... ....|++++..+++|||||||.|++
T Consensus 476 EiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~lg~~~~~--~~~~~~~~~~~~~~~hPGr~A~I~~ 553 (589)
T 3l4g_B 476 EISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGE--DKGGYVIKASEGPAFFPGRCAEIFA 553 (589)
T ss_dssp EEEEEEEECTTSTTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHTTCCBST--TTTSEEEEECCCTTEEEEEEEEEEE
T ss_pred EeeeEEecCCccccCCccccEEEEEEECCCCCHHHHHHHHHHHHHHcCCCccc--cccceEEeccCCCCccCCCEEEEEE
Confidence 99999998765556778889999999999999999999999999999986310 0012788898999999999999999
Q ss_pred CCEEEEEEEEeCHHHHHHCCCCcccccc
Q 007872 557 KGKHVGTFGIVHPEVMSSFEQSLKNISY 584 (586)
Q Consensus 557 ~g~~iG~~GelhP~vl~~~~l~~pv~~~ 584 (586)
+|+.||+||+|||+|+++|||+.||+.+
T Consensus 554 ~g~~iG~~GelHP~v~~~~~l~~~v~~~ 581 (589)
T 3l4g_B 554 RGQSVGKLGVLHPDVITKFELTMPCSSL 581 (589)
T ss_dssp TTEEEEEEEEECHHHHHHTTCCSCEEEE
T ss_pred CCeEEEEEEEECHHHHHHcCCCCCeEEE
Confidence 9999999999999999999999998764
No 2
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=100.00 E-value=9.1e-100 Score=870.16 Aligned_cols=481 Identities=22% Similarity=0.349 Sum_probs=396.9
Q ss_pred CceEEEEecCCCcccccCHHHHHHHHHHHcCC-CCCCceeccCCCCCCcceEEEeecCCCCCCeEEEEEEeccccCCCCc
Q 007872 60 EEVIYKIEVPANRYDLLCLEGIAQALRVFNKQ-QEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASY 138 (586)
Q Consensus 60 ~d~i~~ieit~NR~Dlls~~GiARel~a~~g~-~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~ 138 (586)
+|+++||++|||||||||++|||||++|+++. ...|.+...... ....+.|++++++.||+|+|++|+||++++
T Consensus 154 ~D~viei~iTpNR~D~lS~~GiARElaa~~~~~~~~p~~~~~~~~--~~~~~~v~v~~~~~cp~y~~~vi~~V~~~~--- 228 (795)
T 3pco_B 154 DDNTIEISVTPNRADCLGIIGVARDVAVLNQLPLVQPEIVPVGAT--IDDTLPITVEAPEACPRYLGRVVKGINVKA--- 228 (795)
T ss_dssp CCEEEEEECCTTCCSCSSHHHHHHHHHHHHTCCCCCCCCCCCCCC--SCCCCCCCCSCTTTCSEEEEEEEESCCTTC---
T ss_pred CceeEEeecCCCcHHHhHHHHHHHHHHHHhCCCCCCCcccccccC--CCcceEEEecCcccCceEEEEEEEcccCCC---
Confidence 79999999999999999999999999999996 467766543221 123466766788999999999999999985
Q ss_pred cCHHHHHHHHHhcCCC-CCcEEEeeehhhcccCCC---eEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccc
Q 007872 139 NSFIDLQDKLHQNICR-RRTLVAIGTHDLDTLQGP---FTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLH 214 (586)
Q Consensus 139 ~s~~~lq~kL~~~~~r-~r~~VdIgn~Dld~i~~p---~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~ 214 (586)
+||+|||+||+++++| +|++|||+||.|.++++| |+++++.+ .+.++.... ++++..||++++++.
T Consensus 229 ~SP~wlq~rL~~~g~r~in~vVDitNyv~le~GqPlhafD~dki~g-~i~vr~a~~-----ge~~~~Ld~~e~~l~---- 298 (795)
T 3pco_B 229 PTPLWMKEKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEG-GIVVRMAKE-----GETLVLLDGTEAKLN---- 298 (795)
T ss_dssp CCCTHHHHHHHHTTCCCCCSHHHHHHHHHHHHSCCEEEEEGGGCCS-CCEEECCCS-----SCCEEETTTEEECCC----
T ss_pred CCHHHHHHHHHHcCCCCccHHHHHHHHHHHHhCCCCccccHhHCCC-CeEEEEcCC-----CCEEEecCCceeecC----
Confidence 3899999999999888 588999999555555555 22233332 233333321 223334444556664
Q ss_pred cccCCCcceEEEeCCCCeeeecCcccCCcceeccCCceEEEEec--------------------------ccChhhHHHH
Q 007872 215 IIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECT--------------------------ATDLTKAKIV 268 (586)
Q Consensus 215 i~~~~~~~~VI~D~~~~~lslagIigg~~s~It~~T~nI~iE~a--------------------------~~D~~~~~~~ 268 (586)
+.++||+|+++ ++|+||||||++|+|+++|||||||+| |+|++.+..|
T Consensus 299 -----~~~lvi~D~~~-~~~lagi~gg~~s~v~~~T~~i~lE~a~f~p~~Ir~tar~~~l~tdas~RfERGvDp~~~~~a 372 (795)
T 3pco_B 299 -----ADTLVIADHNK-ALAMGGIFGGEHSGVNDETQNVLLECAFFSPLSITGRARRHGLHTDASHRYERGVDPALQHKA 372 (795)
T ss_dssp -----TTCCEEECSSS-EEEETTTCCBSTTBCCTTCCCEEEEEEECCGGGSTTHHHHTTCCCHHHHHHHHCCCTTCHHHH
T ss_pred -----CCcEEEEeCCc-eEEEccccCCcceeeeCCCCeEEEEEeccCHHHHHHHHHHhCCCchHhhhhhcCCCHHHHHHH
Confidence 34699999996 999999999999999999999999999 6788899999
Q ss_pred HHHHHHHHHHhhcCCceeeeEEEEeeCCceeeecCCCceEEEeehhHHhhhcCCcCCHHHHHHHHHhcCCeEEEcCCCCC
Q 007872 269 LNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNN 348 (586)
Q Consensus 269 l~~~~~~~~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~~~lG~~l~~~~i~~~L~~Lg~~~~~~~~~~~ 348 (586)
+++++++++++|++ ++..+...+. . .+...+++|.++.++|+++||++++.++|.++|++|||++...+ +
T Consensus 373 l~ra~~Li~e~~gg--~v~~v~~~~~--~---~~~~~~~~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~~---~ 442 (795)
T 3pco_B 373 MERATRLLIDICGG--EAGPVIDITN--E---ATLPKRATITLRRSKLDRLIGHHIADEQVTDILRRLGCEVTEGK---D 442 (795)
T ss_dssp HHHHHHHHHTTSSC--EEEEEEEEEC--T---TTSCCCCEEEEEHHHHHHHHSSCCCHHHHHHHHHHHTCEEEEET---T
T ss_pred HHHHHHHHHHHhCC--eEEEEEEeCC--c---cCCCCCeEEEecHHHHHHHhCCCCCHHHHHHHHHHCCCeEEeCC---c
Confidence 99999999999975 4554433321 0 01335679999999999999999999999999999999997643 2
Q ss_pred cceEEEEcCCCCcccCCcchhHhHHHHhhCcCCCCCCCCCCC----CCChHHHHHHHHHHHHHHCCceEEecccccChHH
Q 007872 349 QWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV----KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKE 424 (586)
Q Consensus 349 ~~~l~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~~----~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~ 424 (586)
. |.|+||+||.||.+++||||||||+|||||||+++|... ...+.+++.+++|+.|+++||+|++||||++++.
T Consensus 443 ~--~~V~vPs~R~DI~~e~DliEEVaRiyGydnIp~~~p~~~~~~~~~~~~~~~~~~~r~~l~~~G~~Evitysf~~~~~ 520 (795)
T 3pco_B 443 E--WQAVAPSWRFDMEIEEDLVEEVARVYGYNNIPDEPVQASLIMGTHREADLSLKRVKTLLNDKGYQEVITYSFVDPKV 520 (795)
T ss_dssp E--EEEECCSSCSSCSSHHHHHHHHHHHHCGGGSCCCCCEEECCCCCCCTTBCCHHHHHHHHHHTTCEECCCCSEECHHH
T ss_pred e--EEEECCCCccccCCccHHHHHHHHHhCcccCCccCCCccccCCCCCHHHHHHHHHHHHHHHCCCeeeeccCcCCHHH
Confidence 5 999999999999999999999999999999999998532 3344455789999999999999999999999987
Q ss_pred HHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCC-eeEEEeCcEeecCCCcccccccccEEEEEE
Q 007872 425 ISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP-IKIYEVGDVVLLDEKKDVGASCRRRLAALY 502 (586)
Q Consensus 425 ~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~-~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~ 502 (586)
...+ + + ..++| |+||+|+|+++|||||+||||+++++|++|+++ +++||+|+||.++.+.+.+..+.+++|+++
T Consensus 521 ~~~~-~-~--~~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG~Vf~~~~~~~~~~~e~~~la~~~ 596 (795)
T 3pco_B 521 QQMI-H-P--GVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESGLRFVPDTQAPLGIRQDLMLAGVI 596 (795)
T ss_dssp HHHH-S-S--SCCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEEEEEEEEEECTTSSTTEEEEEEEEEEE
T ss_pred HHhh-C-C--CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEeeeEEecCCCcccCcchhheEEEEE
Confidence 5444 3 1 24678 999999999999999999999999999999875 999999999998765445678889999999
Q ss_pred cCC-----------CCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEECCEEEEEEEEeCHHH
Q 007872 503 CGA-----------NSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEV 571 (586)
Q Consensus 503 ~~~-----------~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g~~iG~~GelhP~v 571 (586)
+|. ..+|+++||+|+++|..+|+.. .+++++.++++|||||||.|+++|+.||+||+|||++
T Consensus 597 ~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~lg~~~-------~~~~~~~~~~~~hPGrsA~I~~~g~~iG~~GelHP~v 669 (795)
T 3pco_B 597 CGNRYEEHWNLAKETVDFYDLKGDLESVLDLTGKLN-------EVEFRAEANPALHPGQSAAIYLKGERIGFVGVVHPEL 669 (795)
T ss_dssp ESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTSSCCS-------SCCEECCCCTTEEEEEEEEECTTTSCCEEEEEECTTT
T ss_pred ECCCcccccccCCCCCCHHHHHHHHHHHHHHcCCCc-------ceEEEECCCCCCCCCCEEEEEECCEEEEEEEEECHHH
Confidence 884 3689999999999999999721 1678888899999999999999999999999999999
Q ss_pred HHHCCCCcccccc
Q 007872 572 MSSFEQSLKNISY 584 (586)
Q Consensus 572 l~~~~l~~pv~~~ 584 (586)
+++|||+.|++.+
T Consensus 670 ~~~~dl~~~v~~~ 682 (795)
T 3pco_B 670 ERKLDLNGRTLVF 682 (795)
T ss_dssp TTTTCCCSCEEEE
T ss_pred HHHcCCCCCEEEE
Confidence 9999999998764
No 3
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=100.00 E-value=6.9e-97 Score=849.22 Aligned_cols=467 Identities=19% Similarity=0.331 Sum_probs=396.0
Q ss_pred CceEEEEecCCCcccccCHHHHHHHHHHHcCCC-CCCceeccCCCCCCcceEEEeecCCCCCCeEEEEEEeccccCCCCc
Q 007872 60 EEVIYKIEVPANRYDLLCLEGIAQALRVFNKQQ-EIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASY 138 (586)
Q Consensus 60 ~d~i~~ieit~NR~Dlls~~GiARel~a~~g~~-~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~ 138 (586)
+|+++||++|||||||||++||||||++++|.. ..|.+............+.|++++++.||||+|++|+||++.
T Consensus 156 ~D~viei~iTpNR~D~lS~~GiARelaa~~~~~~~~p~~~~~~~~~~~~~~~~v~v~~~~~cp~y~~~~i~~v~~~---- 231 (795)
T 2rhq_B 156 NDQVMEFDLTPNRADALSMVGTAYEVAALYQTEMTKPETQSNETSESATNELSVTIDNPEKVPYYSARVVKNVSIE---- 231 (795)
T ss_dssp SCEEEEEECCGGGGGGSSHHHHHHHHHHHHTCCBCCCCCCCCCCSCBGGGTCEEEESCTTTCSEEEEEEEECCCCC----
T ss_pred CceEEEEeCCCChHHHhHHHHHHHHHHHHhCCCCCCCCccccccccCCCCceEEEecCcccCceEEEEEEECCCCC----
Confidence 689999999999999999999999999999974 667664321101112336777777889999999999999996
Q ss_pred cCHHHHHHHHHhcCCC-CCcEEEeee------------hhhcccC-CCeEEEecCCCceEEEeCCCcccCChhHHHhhhc
Q 007872 139 NSFIDLQDKLHQNICR-RRTLVAIGT------------HDLDTLQ-GPFTYEALPPSHINFVPLKQTRDFTADELMEFYK 204 (586)
Q Consensus 139 ~s~~~lq~kL~~~~~r-~r~~VdIgn------------~Dld~i~-~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~ 204 (586)
+||+|||+||+++++| +|++|||+| ||+|++. +++.++...+++ +|+||++
T Consensus 232 ~sp~~l~~rL~~~g~r~in~vVDitNyv~le~G~Plha~D~dki~~g~i~vr~a~~ge-~~~~L~~-------------- 296 (795)
T 2rhq_B 232 PSPIWVQARLIKAGIRPINNVVDISNYVLLEYGQPLHMFDQDHIGSKEIVVRQAKDEE-TMTTLDN-------------- 296 (795)
T ss_dssp CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHHHSCCCEEEEGGGSSSSEEEEEECCTTC-EEEBTTS--------------
T ss_pred CCHHHHHHHHHHCCCCCccHHHHHHHHHHHHhCCCcccccHhHCCCCceEEEEcCCCC-EEEecCC--------------
Confidence 4899999999999888 599999987 5666665 555555555442 5666653
Q ss_pred cccccccccccccCCCcceEEEeCCCCeeeecCcccCCcceeccCCceEEEEec--------------------------
Q 007872 205 SDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAHSAITLKTKNVFIECT-------------------------- 258 (586)
Q Consensus 205 ~~~~l~~y~~i~~~~~~~~VI~D~~~~~lslagIigg~~s~It~~T~nI~iE~a-------------------------- 258 (586)
+++++. +.++||+|++| ++|+||||||++|+|+++|||||||+|
T Consensus 297 ~~~~l~---------~~~lvi~D~~~-~~~~agi~gg~~s~v~~~T~~i~le~a~f~p~~Ir~tar~~~l~tdas~RfER 366 (795)
T 2rhq_B 297 NERKLV---------DTDIVISNGQE-PIALAGVMGGDFSEVTEQTTNVVIEGAIFDPVSIRHTSRRLNLRSEASSRFEK 366 (795)
T ss_dssp CEEECC---------TTCEEEESSSS-EEEETTTEEBSSSBCCTTCCEEEEEEEECCHHHHHHHHHHTTCCCHHHHHHHT
T ss_pred ceeecC---------CCcEEEEECCC-ceEecceeCCCceeeeCCCCEEEEEEEeeCHHHHHHHHHHcCCCchhhhhhcc
Confidence 455554 34699999997 999999999999999999999999999
Q ss_pred ccChhhHHHHHHHHHHHHHHhhcCCceeeeEEEEeeCCceeeec-CCCceEEEeehhHHhhhcCCcCCHHHHHHHHHhcC
Q 007872 259 ATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYP-DLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNRMQ 337 (586)
Q Consensus 259 ~~D~~~~~~~l~~~~~~~~~~~~~~~~i~~v~v~~~~g~~~~~p-~~~~~~i~l~~~~i~~~lG~~l~~~~i~~~L~~Lg 337 (586)
|+|++.+..|+++++.++.++|++.+. . +..+.+| ...+++|.++.++|+++||++++.++|.++|++||
T Consensus 367 GvD~~~~~~al~~~~~ll~~~~gg~v~-~--------~v~~~~~~~~~~~~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lg 437 (795)
T 2rhq_B 367 GIATEFVDEAVDRACYLLQELASGEVL-Q--------DRVSSGDLGSFVTPIDITAEKVNKTIGFNLSNDEIQSIFRQLG 437 (795)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHSCCEEC-B--------CCEEEECCCCSEEEEEEEHHHHHHHHTCCCCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCccc-c--------ceEEccCCCCCCeeEEecHHHHHHHhCCCCCHHHHHHHHHHCC
Confidence 888999999999999999999875321 2 2333455 46678999999999999999999999999999999
Q ss_pred CeEEEcCCCCCcceEEEEcCCCCcccCCcchhHhHHHHhhCcCCCCCCCCC-CC----CCChHHHHHHHHHHHHHHCCce
Q 007872 338 LHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPA-SV----KPLALNEFSDLMRLEIAMNGFT 412 (586)
Q Consensus 338 ~~~~~~~~~~~~~~l~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~-~~----~~~~~~~~~~~lr~~l~~~Gf~ 412 (586)
|++...+ +. |.|+||+||.||.|++||||||||+|||||||.++|. .. ..++.+++.+++|+.|+++||+
T Consensus 438 ~~v~~~~---~~--~~V~vPs~R~Di~~e~DliEEVaRiyGydnIp~tlP~~~~~~~g~~~~~~~~~~~ir~~L~~~Gf~ 512 (795)
T 2rhq_B 438 FETTLKG---ET--LTVNVPSRRKDITIKEDLIEEVARIYGYDEIPSSLPVFGEVTSGELTDRQHKTRTLKETLEGAGLN 512 (795)
T ss_dssp CEEEEET---TE--EEEEEETTCTTCCSHHHHHHHHHHHHCTTTSCCCCCCCSSCCCCCCCHHHHHHHHHHHHHHHTTCE
T ss_pred CeEEeCC---ce--EEEECCCCccccCCccHHHHHHHHHhCcccCCccCCCccccCCCCCCHHHHHHHHHHHHHHHCCCE
Confidence 9996432 35 9999999999999999999999999999999999996 32 7788999999999999999999
Q ss_pred EEecccccChHHHHHHcCCCCCCCC-ce-eeCCccCCchhhcccchHHHHHHHHhccCCCC-CeeEEEeCcEeecCCCcc
Q 007872 413 EVLTWILCSSKEISTMLNRQTDEST-AV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPK-PIKIYEVGDVVLLDEKKD 489 (586)
Q Consensus 413 Ev~t~sl~s~~~~~~~l~~~~~~~~-~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~-~~~lFEiG~V~~~~~~~~ 489 (586)
|++||+|++++.+ ++++ + + .+ .+ |+||+|+|+++|||||+||||+++++|++|+. ++|+||+|+||+++...+
T Consensus 513 Evitysfvs~~~~-~~l~-~-~-~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~vrlFEiG~Vf~~d~~~~ 588 (795)
T 2rhq_B 513 QAITYSLVSKDHA-KDFA-L-Q-ERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGEGE 588 (795)
T ss_dssp ECCCCSEECTTTT-TTTC-S-S-CCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCEEEEEEEEEEECCCTTS
T ss_pred EEecCCccCHHHH-HhhC-C-C-CCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCeEEEEEeeEEecCCccc
Confidence 9999999999865 5554 2 2 45 69 99999999999999999999999999999875 699999999998654321
Q ss_pred cccccccEEEEEEcCCC-----------CCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEECC
Q 007872 490 VGASCRRRLAALYCGAN-----------SGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKG 558 (586)
Q Consensus 490 ~g~~~~~~l~~~~~~~~-----------~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g 558 (586)
+. .+.++++++++|.. .+|+++||+|+++|+.+|++ +.+++..+|+|||||+|+|+++|
T Consensus 589 ~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~lG~~---------~~~~~~~~p~~hPGr~a~I~~~g 658 (795)
T 2rhq_B 589 LP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKLNLE---------FSYKAGKIEGLHPGRTAIVSLEG 658 (795)
T ss_dssp CC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHHTCC---------CEEEECCCTTEEEEEEEEEEETT
T ss_pred Cc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHcCCc---------EEEEECCCCcccCCcEEEEEECC
Confidence 23 67889999999975 89999999999999999986 56778888999999999999999
Q ss_pred EEEEEEEEeCHHHHHHCCCCcccccc
Q 007872 559 KHVGTFGIVHPEVMSSFEQSLKNISY 584 (586)
Q Consensus 559 ~~iG~~GelhP~vl~~~~l~~pv~~~ 584 (586)
+.||++|+|||+|+++|||++| +++
T Consensus 659 ~~IG~~G~lHP~Vl~~~~l~~~-~af 683 (795)
T 2rhq_B 659 QDIGFIGELHPQVAADNDLKRT-YVF 683 (795)
T ss_dssp EEEEEEEEECHHHHHHTTCCSE-EEE
T ss_pred EEEEEEEEECHHHHHHcCCCCc-EEE
Confidence 9999999999999999999988 654
No 4
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=100.00 E-value=3.1e-95 Score=831.78 Aligned_cols=457 Identities=22% Similarity=0.298 Sum_probs=389.8
Q ss_pred CceEEEEecCCCcccccCHHHHHHHHHHHcCC-CCCCceeccCCCCCCcceEEEeecCCCCCCeEEEEEEeccccCCCCc
Q 007872 60 EEVIYKIEVPANRYDLLCLEGIAQALRVFNKQ-QEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASY 138 (586)
Q Consensus 60 ~d~i~~ieit~NR~Dlls~~GiARel~a~~g~-~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~ 138 (586)
+|+++||++||||+||||++|||||+||+ |. ...|........ ....+.|++++++.||+|+|++|+||++.
T Consensus 152 ~D~viei~iTpNR~D~ls~~GiARE~aa~-~~~~~~p~~~~~~~~--~~~~~~v~i~~~~~cp~y~~~~i~~v~~~---- 224 (785)
T 1b7y_B 152 EEVVLDLEVTPNRPDALGLLGLARDLHAL-GYALVEPEAALKAEA--LPLPFALKVEDPEGAPHFTLGYAFGLRVA---- 224 (785)
T ss_dssp CCEEEECCCCTTCGGGGSHHHHHHHHHHT-TCCCCCCCCCCCEEC--CCCSSEEEESCTTTCSEEEEEEEESCCCC----
T ss_pred CceEEEecCCCChHHHhHHHHHHHHHHhc-CCCCCCCCccccccc--cCCceEEEecCcccCceEEEEEEECCCCC----
Confidence 79999999999999999999999999999 75 355544221001 12236677778889999999999999996
Q ss_pred cCHHHHHHHHHhcCCC-CCcEEEeee------------hhhcccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhcc
Q 007872 139 NSFIDLQDKLHQNICR-RRTLVAIGT------------HDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKS 205 (586)
Q Consensus 139 ~s~~~lq~kL~~~~~r-~r~~VdIgn------------~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~ 205 (586)
+||+|||+||+++++| +|++|||+| ||+|++++++.++...++ .+|+||++ +
T Consensus 225 ~Sp~wl~~rL~~~g~r~in~vVDitNyv~le~G~Plha~D~dki~g~i~vr~a~~g-e~~~~Ld~--------------~ 289 (785)
T 1b7y_B 225 PSPLWMQRALFAAGMRPINNVVDVTNYVMLERAQPMHAFDLRFVGEGIAVRRAREG-ERLKTLDG--------------V 289 (785)
T ss_dssp CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHHSSCCCEEEEGGGTBTEEEEEECCTT-CEEEBTTS--------------C
T ss_pred CCHHHHHHHHHHCCCCCccHHHHHHHHHHHHhCCCcccccHhHCCCCeEEEEcCCC-CEEEeCCC--------------c
Confidence 5899999999999888 589999988 556666555556555544 36666654 4
Q ss_pred ccccccccccccCCCcceEEEe----CCCCeeeecCcccCCcceeccCCceEEEEec-----------------------
Q 007872 206 DLKLKKYLHIIENSPLYPVLYD----QNRTVLSLPPIINGAHSAITLKTKNVFIECT----------------------- 258 (586)
Q Consensus 206 ~~~l~~y~~i~~~~~~~~VI~D----~~~~~lslagIigg~~s~It~~T~nI~iE~a----------------------- 258 (586)
++++. +.++||+| +++ ++|+||||||++|+|+++|||||||+|
T Consensus 290 ~~~l~---------~~~lvi~D~~~~~~~-~~~lagi~gg~~s~v~~~T~~i~lE~a~F~p~~Ir~tar~~~l~tdas~R 359 (785)
T 1b7y_B 290 ERTLH---------PEDLVIAGWRGEESF-PLGLAGVMGGAESEVREDTEAIALEVACFDPVSIRKTARRHGLRTEASHR 359 (785)
T ss_dssp EEECC---------TTCEEEEEEETTEEE-EEEETTTEEBTTTBCCTTCCEEEEEEEECCHHHHHHHHHHTTCCCHHHHH
T ss_pred eeecC---------CCcEEEEeccCCCCC-eEEecceeCCCceEeecCCceEEEEEEeeCHHHHHHHHHHcCCCchhhhh
Confidence 55553 24599999 665 999999999999999999999999999
Q ss_pred ---ccChhhHHHHHHHHHHHHHHhhcCCceeeeEEEEeeCCceeeecCCCceEEEeehhHHhhhcCCcCCHHHHHHHHHh
Q 007872 259 ---ATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSLSYINHTIGVSLEAEEVTSLLNR 335 (586)
Q Consensus 259 ---~~D~~~~~~~l~~~~~~~~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~~~i~~~lG~~l~~~~i~~~L~~ 335 (586)
|+|++.+..|+++++.++.++|++... . +..+.+|...+++|.++.++|+++||++++.++|.++|++
T Consensus 360 fERGvD~~~~~~al~~~~~ll~~~~gg~v~-~--------~v~~~~~~~~~~~i~l~~~~i~~~lG~~i~~~~i~~iL~~ 430 (785)
T 1b7y_B 360 FERGVDPLGQVPAQRRALSLLQALAGARVA-E--------ALLEAGSPKPPEAIPFRPEYANRLLGTSYPEAEQIAILKR 430 (785)
T ss_dssp HHHCCCTTCHHHHHHHHHHHHHHHSCCEEE-S--------CCEEECCCCCCCCEEECHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHcCCccc-c--------ceEEeccCCCCeeEEecHHHHHHHhCCCCCHHHHHHHHHH
Confidence 889999999999999999999975321 2 3344566566779999999999999999999999999999
Q ss_pred cCCeEEEcCCCCCcceEEEEcCCCCcccCCcchhHhHHHHhhCcCCCCCCCCCC---C---CCChHHHHHHHHHHHHHHC
Q 007872 336 MQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPAS---V---KPLALNEFSDLMRLEIAMN 409 (586)
Q Consensus 336 Lg~~~~~~~~~~~~~~l~V~vP~~R~DI~~~~DliEEIar~yGydni~~~~p~~---~---~~~~~~~~~~~lr~~l~~~ 409 (586)
|||++...+ +. |.|+||+||+||.|++||||||||+|||||||+++|.. . ..++.+++.+++|+.|+++
T Consensus 431 Lg~~v~~~~---~~--~~V~vPs~R~Di~~e~DliEEVaRiyGydnIp~~~p~~~~~~~~~~~~~~~~~~~~ir~~L~~~ 505 (785)
T 1b7y_B 431 LGCRVEGEG---PT--YRVTPPSHRLDLRLEEDLVEEVARIQGYETIPLALPAFFPAPDNRGVEAPYRKEQRLREVLSGL 505 (785)
T ss_dssp TTCEEESSS---SS--EEEECCTTCCSCCSHHHHHHHHHHHHCGGGSCCCCCCCCCCGGGSSTTHHHHHHHHHHHHHHHH
T ss_pred CCCeEEeCC---ce--EEEECCCcccccCCccHHHHHHHHHhCcccCCccCCCcccccccccCCHHHHHHHHHHHHHHHC
Confidence 999996422 35 99999999999999999999999999999999999865 2 5677889999999999999
Q ss_pred CceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCC-C-CeeEEEeCcEeecCC
Q 007872 410 GFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHP-K-PIKIYEVGDVVLLDE 486 (586)
Q Consensus 410 Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~-~-~~~lFEiG~V~~~~~ 486 (586)
||+|++||+|++++.. +++.. + .+.+ |+||+|+|+++|||||+||||+++++|++|+ . ++|+||+|+||+ +
T Consensus 506 Gf~Evitysfvs~~~~-~~l~~--~-~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~vrlFEiG~Vf~-~- 579 (785)
T 1b7y_B 506 GFQEVYTYSFMDPEDA-RRFRL--D-PPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFR-E- 579 (785)
T ss_dssp TCEECCCCSEECTTHH-HHTTC--C-CCSCEESSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCEEEEEEEEEES-S-
T ss_pred CCEEEecCcccCHHHH-HhcCC--C-CCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCeEEEEEeeeec-c-
Confidence 9999999999999865 55532 2 4568 9999999999999999999999999999988 5 699999999997 1
Q ss_pred CcccccccccEEEEEEcCCC----------CCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEE
Q 007872 487 KKDVGASCRRRLAALYCGAN----------SGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITH 556 (586)
Q Consensus 487 ~~~~g~~~~~~l~~~~~~~~----------~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~ 556 (586)
.+.++++++++|.. .+|+++||+|+++|+.+|++ +.+++..+|+|||||+|+|++
T Consensus 580 ------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~lgi~---------~~~~~~~~p~~hPGr~a~I~~ 644 (785)
T 1b7y_B 580 ------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARLGLA---------FRVEAQAFPFLHPGVSGRVLV 644 (785)
T ss_dssp ------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHHTCC---------CEEECCCCTTEEEEEEEEEEE
T ss_pred ------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHcCCc---------eEEeecCCCcccCceEEEEEE
Confidence 57889999999976 79999999999999999985 677888889999999999999
Q ss_pred CCEEEEEEEEeCHHHHHHCCCCcccccc
Q 007872 557 KGKHVGTFGIVHPEVMSSFEQSLKNISY 584 (586)
Q Consensus 557 ~g~~iG~~GelhP~vl~~~~l~~pv~~~ 584 (586)
+|+.+|++|+|||+|+++|||+ |++++
T Consensus 645 ~g~~iG~~G~lHP~Vl~~~~l~-~v~af 671 (785)
T 1b7y_B 645 EGEEVGFLGALHPEIAQELELP-PVHLF 671 (785)
T ss_dssp TTEEEEEEEEECHHHHHHTTCC-CCEEE
T ss_pred CCEEEEEEEEECHHHHHHCCCC-cEEEE
Confidence 9999999999999999999998 87764
No 5
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.2e-77 Score=627.00 Aligned_cols=341 Identities=37% Similarity=0.588 Sum_probs=304.9
Q ss_pred CCeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhhHHHhhhccccccCCCCCCceEEEEecC-----CCcccc
Q 007872 1 MPTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVP-----ANRYDL 75 (586)
Q Consensus 1 Mp~i~~~~~~l~~~~g~~~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit-----~NR~Dl 75 (586)
||||+|++++|++++|+++|++||++.||++|.|+++..+ .+++|++| ||||||
T Consensus 1 Mp~i~v~~~~L~~~lg~~~~~~el~~~~~~~G~~~~~~~d---------------------~iiei~it~~~~~pNR~D~ 59 (348)
T 2cxi_A 1 MPKFDVSKSDLERLIGRSFSIEEWEDLVLYAKCELDDVWE---------------------ENGKVYFKLDSKDTNRPDL 59 (348)
T ss_dssp -CEEEEEHHHHHHHHTSCCCHHHHHHHHHHTTEEEEEEEE---------------------ETTEEEEEEEECCTTCGGG
T ss_pred CCEEEECHHHHHHHHCCCCCHHHHHhhhhhccCCHHHcCc---------------------eEEEEEccCCCCCCChHHH
Confidence 9999999999999999999999999999999999998753 37999999 999999
Q ss_pred cCHHHHHHHHHHHcCC-CCCCceeccCCCCCCcceEEEeecCCCCCCeEEEEEEeccccCCCCccCHHHHHHHHHhcCCC
Q 007872 76 LCLEGIAQALRVFNKQ-QEIPKYTLSDVSKDSMLQMHVKPETSSIRPYVVCAVLRDISFDEASYNSFIDLQDKLHQNICR 154 (586)
Q Consensus 76 ls~~GiARel~a~~g~-~~~p~~~~~~~~~~~~~~i~V~~~~~~~rp~~~~~vi~~v~~~~~~~~s~~~lq~kL~~~~~r 154 (586)
||++||||||++++|. .+.|.+.+.. ....+.|+....+.||||+|++++||++++++|+||+|||+|||+++||
T Consensus 60 lS~~GiARelaa~~~~~~~~p~~~~~~----~~~~v~v~~~~~~~~p~~~~~vi~~v~~~~~~~~sp~wlq~rL~~~~G~ 135 (348)
T 2cxi_A 60 WSAEGVARQIKWALGIEKGLPKYEVKK----SNVTVYVDEKLKDIRPYGVYAIVEGLRLDEDSLSQMIQLQEKIALTFGR 135 (348)
T ss_dssp SSHHHHHHHHHHHTTSSCSSCCCCEEE----EEEEEEECGGGTTTSCEEEEEEEESCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHhCCCCCCCCccccc----cceEEEECCCccccCCeEEEEEEECcccCcCCCCCHHHHHHHHHHHhCC
Confidence 9999999999999997 4567664421 1244555443348999999999999999877788999999999999888
Q ss_pred CCcEEEeeehhhcccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCcceEEEeCCCCeee
Q 007872 155 RRTLVAIGTHDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLS 234 (586)
Q Consensus 155 ~r~~VdIgn~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~VI~D~~~~~ls 234 (586)
+|+.|.||.||+|++++||.|++.++++ +|+||++.++++.+++++ .+.++++|.+++++++.+|||+|++|+++|
T Consensus 136 ~r~~Vpi~a~Dldki~g~i~vr~a~~ge-~f~~L~~~~~l~~~e~~~---~~~~~~ky~~~~~~~~~~~vI~D~~~~vls 211 (348)
T 2cxi_A 136 RRREVAIGIFDFDKIKPPIYYKAAEKTE-KFAPLGYKEEMTLEEILE---KHEKGREYGHLIKDKQFYPLLIDSEGNVLS 211 (348)
T ss_dssp TTTSEEEEEEEGGGSCSSEEEEEECTTC-EECBTTCSSCEEHHHHHH---HSHHHHHHGGGTTTSSSEEEEEETTSCEEE
T ss_pred cccCCcccccCHHHCCCCeEEEEcCCCC-EEEECCCccccCHHHhhh---hhccccccchhhccCCceEEEEECCCCEEE
Confidence 8888999999999999999999999887 999999977899999998 557788999999999999999999977999
Q ss_pred ecCcccCCcc-eeccCCceEEEEecccChhhHHHHHHHHHHHHHHhhcCCceeeeEEEEeeCCceeeecCCCceEEEeeh
Q 007872 235 LPPIINGAHS-AITLKTKNVFIECTATDLTKAKIVLNTMVTIFSEYCKRKYQVEPVEVVYADGRSYVYPDLSAYNMEVSL 313 (586)
Q Consensus 235 lagIigg~~s-~It~~T~nI~iE~a~~D~~~~~~~l~~~~~~~~~~~~~~~~i~~v~v~~~~g~~~~~p~~~~~~i~l~~ 313 (586)
+||||||++| +||++|||||||+||+|++.+..|+++++++|+++| ++++++.++++.+ ...+|.+.++++.++.
T Consensus 212 l~gi~~g~~sg~Vt~~T~~iliE~ag~d~~~~~~al~~~~~ll~e~g---g~v~~v~~~~~~~-~~~~~~~~~~~i~~~~ 287 (348)
T 2cxi_A 212 MPPIINSEFTGRVTTDTKNVFIDVTGWKLEKVMLALNVMVTALAERG---GKIRSVRVVYKDF-EIETPDLTPKEFEVEL 287 (348)
T ss_dssp ETTTEEBSSSSCCCTTCCSEEEEEEESCHHHHHHHHHHHHHHHHTTT---CEEEEEEEECSSC-EEEECCCCCEEEEEEH
T ss_pred ecCeecCCCcCcccCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHhC---CCccceEEEecCc-ccccCCCCCeEEEecH
Confidence 9999999999 999999999999999999999999999999999994 3567777776532 3446767888999999
Q ss_pred hHHhhhcCCcCCHHHHHHHHHhcCCeEEEcCCCCCcceEEEEcCCCCcccCCcchhHhHHHHhhCc
Q 007872 314 SYINHTIGVSLEAEEVTSLLNRMQLHAERSASGNNQWNINVLVPPTRSDVLHPCDVMEDVAIAYGY 379 (586)
Q Consensus 314 ~~i~~~lG~~l~~~~i~~~L~~Lg~~~~~~~~~~~~~~l~V~vP~~R~DI~~~~DliEEIar~yGy 379 (586)
++|+++||++++.++|.++|++|||++...+ +. |.|+||+||+||+|++||||||||+|||
T Consensus 288 ~~i~~~lG~~l~~~~i~~iL~~lg~~~~~~~---~~--~~V~vP~~R~DI~~~~DliEEVaR~yGy 348 (348)
T 2cxi_A 288 DYIRKLSGLELNDGEIKELLEKMMYEVEISR---GR--AKLKYPAFRDDIMHARDILEDVLIAYGY 348 (348)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHTTCEEEEET---TE--EEEEECTTCCCCCSHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHcCCeEEeCC---Ce--EEEECCCCcccCCcccHHHHHhHHhcCC
Confidence 9999999999999999999999999997532 25 9999999999999999999999999999
No 6
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=100.00 E-value=2e-40 Score=326.03 Aligned_cols=182 Identities=22% Similarity=0.353 Sum_probs=156.8
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP 472 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~ 472 (586)
..+++.+++|+.|+++||+|++||||++++ .++.++... ..++| |+||+|+|+++|||||+||||+++++|++|+.+
T Consensus 5 ~~~~~~~~ir~~L~~~G~~Evitysf~s~~-~~~~~~~~~-~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~ 82 (213)
T 3ica_A 5 RRYKWQTVVSEQLVGAGFNEILNNSLTAGS-YYEGLKSHP-REMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHL 82 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEEGG-GGTTCSSSC-GGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHHHCCCceeeeccCCCHH-HHhhhcccC-cCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCC
Confidence 467899999999999999999999999987 455554322 24578 999999999999999999999999999999986
Q ss_pred -eeEEEeCcEeecCCCcc------cccccccEEEEEEcCC-----------CCCHHHHHHHHHHHHHHhCCCCCCCCCCc
Q 007872 473 -IKIYEVGDVVLLDEKKD------VGASCRRRLAALYCGA-----------NSGFELIHCLVDRIMEVIGTPFVPVGDDT 534 (586)
Q Consensus 473 -~~lFEiG~V~~~~~~~~------~g~~~~~~l~~~~~~~-----------~~~f~~ikg~le~ll~~lgi~~~~~~~~~ 534 (586)
+|+||+|+||.+++... .+..+.+++|++++|. .++|+++||+|+++|+.+|++..
T Consensus 83 ~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~lgi~~~------ 156 (213)
T 3ica_A 83 SLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRVGIETG------ 156 (213)
T ss_dssp EEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHTTCCGG------
T ss_pred CeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHhCCCcc------
Confidence 99999999998754210 2246788999999883 57999999999999999998621
Q ss_pred cEEEEecCCCCccCCceEEEEECCEEEEEEEEeCHHHHHHCCCCcccccc
Q 007872 535 GYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVMSSFEQSLKNISY 584 (586)
Q Consensus 535 ~~~~~~~~~~~f~pgr~A~I~~~g~~iG~~GelhP~vl~~~~l~~pv~~~ 584 (586)
.+++++..+++|||||+|+ +++|+.||++|+|||+|+++|||+.||+.+
T Consensus 157 ~~~~~~~~~~~~hpgr~a~-~~~g~~iG~~G~lhP~v~~~~~l~~~v~~~ 205 (213)
T 3ica_A 157 AYTLKTADNDLYASAMEVK-TRSGKLLGTFGTVSTELIKRFEIEQPVYFA 205 (213)
T ss_dssp GEEEEECCCTTEEEEEEEE-ETTCCEEEEEEEECHHHHHHTTCCSCEEEE
T ss_pred ceEEeeccCCCCCCCeEEE-eECCcEEEEEeEECHHHHHHcCCCCCeEEE
Confidence 1788888899999999999 889999999999999999999999998764
No 7
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=100.00 E-value=1.8e-40 Score=326.22 Aligned_cols=183 Identities=22% Similarity=0.327 Sum_probs=151.4
Q ss_pred ChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCC
Q 007872 393 LALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPK 471 (586)
Q Consensus 393 ~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~ 471 (586)
+..+++.+++|+.|+++||+|++||||++++. ++.++... ..++| |+||+|+|+++|||||+||||+++++|++|+.
T Consensus 4 d~~~~~~~~ir~~l~~~G~~Evitysf~~~~~-~~~~~~~~-~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~ 81 (213)
T 3ig2_A 4 DKSNKLQNLVAEQLVGCGFNEILNNSLTRAAY-YDGLESYP-SKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKN 81 (213)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCSEECGGG-GTTCSSSC-GGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHHHCCCeEEeccccCCHHH-HHhhcccC-cCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCC
Confidence 45678999999999999999999999999874 55554322 24679 99999999999999999999999999999987
Q ss_pred C-eeEEEeCcEeecCCCc------ccccccccEEEEEEcC-----------CCCCHHHHHHHHHHHHHHhCCCCCCCCCC
Q 007872 472 P-IKIYEVGDVVLLDEKK------DVGASCRRRLAALYCG-----------ANSGFELIHCLVDRIMEVIGTPFVPVGDD 533 (586)
Q Consensus 472 ~-~~lFEiG~V~~~~~~~------~~g~~~~~~l~~~~~~-----------~~~~f~~ikg~le~ll~~lgi~~~~~~~~ 533 (586)
+ +|+||+|+||.++... ..+..+.+++|++++| ...+|+++||+|+++|..+|++..
T Consensus 82 ~~v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~lg~~~~----- 156 (213)
T 3ig2_A 82 ADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRLGLDLH----- 156 (213)
T ss_dssp -CCEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHTTBCGG-----
T ss_pred CCeeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHhCCCcc-----
Confidence 6 9999999999976521 0234678899999988 346899999999999999998621
Q ss_pred ccEEEEecCCCCccCCceEEEEECCEEEEEEEEeCHHHHHHCCCCcccccc
Q 007872 534 TGYYIQRSDEPEFLPGRQASITHKGKHVGTFGIVHPEVMSSFEQSLKNISY 584 (586)
Q Consensus 534 ~~~~~~~~~~~~f~pgr~A~I~~~g~~iG~~GelhP~vl~~~~l~~pv~~~ 584 (586)
.+++++..+++|||||+|+ +++|+.||++|+|||+|+++|||+.||+.+
T Consensus 157 -~~~~~~~~~~~~hPgr~a~-~~~g~~iG~~G~lhP~v~~~~~l~~~v~~~ 205 (213)
T 3ig2_A 157 -SLVVGNLSDDIYSTALTVN-TKGGKRLATFGVVTKKMLKAFDVDNEVYYA 205 (213)
T ss_dssp -GCEEEEECSSSEEEEEEEE-CTTCCEEEEEEEECHHHHHHTTCCEEEEEE
T ss_pred -ceEEeeccCCCCCCCeEEE-eECCcEEEEEeEECHHHHHHcCcCCCeEEE
Confidence 1678888899999999999 889999999999999999999999998764
No 8
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=100.00 E-value=1.9e-38 Score=344.39 Aligned_cols=220 Identities=15% Similarity=0.237 Sum_probs=187.3
Q ss_pred CCCCcccCCcchhHhHHHHhhCcCCCCCCCCCCC-CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHH-------
Q 007872 357 PPTRSDVLHPCDVMEDVAIAYGYNNIPKRKPASV-KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTM------- 428 (586)
Q Consensus 357 P~~R~DI~~~~DliEEIar~yGydni~~~~p~~~-~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~------- 428 (586)
+..|.||.+++|++|||||+||||+++++++... ..+|.+++.+++|+.|+++||+|++||+|+++..++..
T Consensus 10 ~~tR~Di~~~~DliEEvaR~yGyd~i~~~~~~~~g~~hp~~~~~~~Ir~~l~~lGF~Ev~~~s~~s~~~n~p~~~Hpar~ 89 (534)
T 2du3_A 10 ELAEKDFEAAWKAGKEILAERSPNELYPRVGFSFGKEHPLFATIQRLREAYLSIGFSEVVNPLIVEDVHVKKQFGREALA 89 (534)
T ss_dssp HHHHHCHHHHHHHGGGGSCCCCGGGSTTSSCCCCCCCCHHHHHHHHHHHHHHHTTCEECCCCCEEETHHHHHHHGGGHHH
T ss_pred cCChhhcchhhHHHhhhhhccCCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHCCCEEEeCceEeChhhcccccccchhh
Confidence 4578999999999999999999999998874333 88999999999999999999999999999999762211
Q ss_pred -----cCCCC--------------------------------------------C------------CCCce-eeCCccC
Q 007872 429 -----LNRQT--------------------------------------------D------------ESTAV-VGNPRTS 446 (586)
Q Consensus 429 -----l~~~~--------------------------------------------~------------~~~~v-l~NP~s~ 446 (586)
+.... + +...+ ++||+|+
T Consensus 90 ~~Dr~fyl~~~~~~~~g~~~~~~e~I~~~~G~~l~~~~l~~~~~~y~~~~~~~~~~~~~v~~vh~~fds~~v~l~NPis~ 169 (534)
T 2du3_A 90 VLDRCFYLATLPKPNVGISAEKIRQIEAITKREVDSKPLQEIFHRYKKGEIDGDDLSYLIAEVLDVDDITAVKILDEVFP 169 (534)
T ss_dssp HHTTSCEEEECCCCCTTGGGTTTTTTSCCCCSSCCCSCTTTTTTHHHHSCCSGGGTTTTTTSSSCSGGGSHHHHHHTTCT
T ss_pred hccceeeccCcccccccccchhhhhhhhhccccchhhhhhhhhhhhhccccccccccccccchhcccccceeeecCCCCh
Confidence 10000 0 01127 9999999
Q ss_pred C---------chhhcccchHHHHHHHHhccCCCC-CeeEEEeCcEeecCCC-cccccccccEEEEEEcCCCCCHHHHHHH
Q 007872 447 D---------FEVVRTTLMPGILKTIGHNKDHPK-PIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFELIHCL 515 (586)
Q Consensus 447 e---------~~~lR~sLlpgLL~~l~~N~~~~~-~~~lFEiG~V~~~~~~-~~~g~~~~~~l~~~~~~~~~~f~~ikg~ 515 (586)
| +++|||||+||||.++++|++++. |+|+||+|+||+.+.. +.++..+.++++++++|...+|+++||+
T Consensus 170 e~~~~~~~~~~svLRTsLlPgLL~~lr~N~~r~~~pvrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgi 249 (534)
T 2du3_A 170 EFKELKPISSTLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAV 249 (534)
T ss_dssp TTTTCCCEEEEEEECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHH
T ss_pred hhccccccccccccCccchhhHHHHHHHHHhCCCCCeeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHH
Confidence 9 799999999999999999998864 6999999999987643 3455678899999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCccEEEEecCCC--CccCCceEEEEE-------------CC-EEEEEEEEeCHHHHHHCCCCc
Q 007872 516 VDRIMEVIGTPFVPVGDDTGYYIQRSDEP--EFLPGRQASITH-------------KG-KHVGTFGIVHPEVMSSFEQSL 579 (586)
Q Consensus 516 le~ll~~lgi~~~~~~~~~~~~~~~~~~~--~f~pgr~A~I~~-------------~g-~~iG~~GelhP~vl~~~~l~~ 579 (586)
++++|+.+|+.. +.+++++++ +||||++|+|++ +| ..||++|++||+|+++|||++
T Consensus 250 lE~LL~~LGi~~--------~r~~~~~~~~~~yhPgt~aeI~v~~~~~~g~~~~~~~gW~eIG~~G~vhP~VL~~~gi~~ 321 (534)
T 2du3_A 250 AEALLRQFGFEN--------FRFRKDEKRSKYYIPDTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYDIPY 321 (534)
T ss_dssp HHHHHGGGTCCE--------EEEEECTTCCTTBCTTTCEEEEEEEEEEETCSSSCTEEEEEEEEEEEBCHHHHHTTTCCS
T ss_pred HHHHHHHcCCCe--------EEEEECCCCcccccCCeEEEEEEEeccccccccccCCCCEEEEEEEEECHHHHHHcCCCC
Confidence 999999999752 778887776 499999999988 56 799999999999999999999
Q ss_pred ccccc
Q 007872 580 KNISY 584 (586)
Q Consensus 580 pv~~~ 584 (586)
|+++|
T Consensus 322 ~v~af 326 (534)
T 2du3_A 322 PVMNL 326 (534)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 98875
No 9
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=100.00 E-value=1.1e-36 Score=313.07 Aligned_cols=207 Identities=16% Similarity=0.154 Sum_probs=169.0
Q ss_pred CCcchhHhHHHHhhCcCCCCCCCCCCC----CCChHHHHHHHHHHHHHHCCceEEecccccChHH-HHHHcCCCCCC---
Q 007872 364 LHPCDVMEDVAIAYGYNNIPKRKPASV----KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKE-ISTMLNRQTDE--- 435 (586)
Q Consensus 364 ~~~~DliEEIar~yGydni~~~~p~~~----~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~-~~~~l~~~~~~--- 435 (586)
..++||||||||+|||||||.++|... ..++.+++.+++|+.|+++||+|+ +|+|++.+. +++.++.+.+.
T Consensus 20 ~~~~DliEEv~R~~gyd~i~~tlp~~~~~~g~~~~~~~~~~~iR~~l~~~Gf~Ev-~~s~l~~~~~nf~~l~~~~~~par 98 (294)
T 2rhq_A 20 HMGTELMEKLNQQLAEETIDVTLPSRQISIGSKHPLTRTVEEIEDLFLGLGYEIV-DGYEVEQDYYNFEALNLPKSHPAR 98 (294)
T ss_dssp -----CTTHHHHHTTTTCCCTTSCCCCCCCCCCCHHHHHHHHHHHHHHTTTCEEC-CCCSEEEHHHHTGGGTCCTTCGGG
T ss_pred CCcchHHHHHHHHhCcccCCccCCCcccCCCCCCHHHHHHHHHHHHHHHCCCEEE-cCcceeeehhhHHhhCCCCCcccc
Confidence 357799999999999999999998532 788999999999999999999999 999998753 45565443221
Q ss_pred --CCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHH
Q 007872 436 --STAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELI 512 (586)
Q Consensus 436 --~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~i 512 (586)
.+++ |. |+++|||||+|+|++++++|+ +..++|+||+|+||++++.+.++..+..+++++++|+..+|+++
T Consensus 99 ~~~d~~~l~-----e~~vLRtsl~p~ll~~l~~N~-~~~~~riFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~~df~dl 172 (294)
T 2rhq_A 99 DMQDSFYIT-----DEILMRTHTSPVQARTMEKRN-GQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDL 172 (294)
T ss_dssp CTTTSCBSS-----SSEEECSSSHHHHHHHHHHTT-TCSCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEEESSCCHHHH
T ss_pred ccCCcEEEc-----CcceeeccCHHHHHHHHHhcC-CCCCccEEEEcCEEecCCCCCCCCChhhEEEEEEECCCCCHHHH
Confidence 1145 52 899999999999999999998 44579999999999875422334457889999999999999999
Q ss_pred HHHHHHHHHHh-CCCCCCCCCCccEEEEecCCCCccCCceEEEEE---CC-----------EEEEEEEEeCHHHHHHCCC
Q 007872 513 HCLVDRIMEVI-GTPFVPVGDDTGYYIQRSDEPEFLPGRQASITH---KG-----------KHVGTFGIVHPEVMSSFEQ 577 (586)
Q Consensus 513 kg~le~ll~~l-gi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~---~g-----------~~iG~~GelhP~vl~~~~l 577 (586)
||+|+++++.+ |++.. +.++++..|++|||++|+|++ +| +.||++|+|||+|+++|||
T Consensus 173 Kg~le~ll~~l~g~~~~-------~~~~~~~~p~~hPg~~a~i~~~~~~g~~~~~~~~~~w~eiG~~G~vhP~Vl~~~gl 245 (294)
T 2rhq_A 173 KGTLELVAKKLFGADRE-------IRLRPSYFPFTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMVHPNVLEMAGF 245 (294)
T ss_dssp HHHHHHHHHHHHCTTCC-------EEEEECCBTTEEEEEEEEEECSSSTTSCCTTTTTSSEEEEEEEEEECHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcE-------EEEecCcCCCCCCcEEEEEEEEccCCcccccccCCCCeEEEEEeeECHHHHHHcCC
Confidence 99999999988 87421 677887889999999999998 66 5899999999999999999
Q ss_pred Cc---ccccc
Q 007872 578 SL---KNISY 584 (586)
Q Consensus 578 ~~---pv~~~ 584 (586)
+. |++++
T Consensus 246 ~~~~~~~~af 255 (294)
T 2rhq_A 246 DSNEYSGFAF 255 (294)
T ss_dssp CTTTCEEEEE
T ss_pred CCCcCeEEEE
Confidence 85 66654
No 10
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=1.2e-29 Score=275.13 Aligned_cols=201 Identities=12% Similarity=0.229 Sum_probs=165.4
Q ss_pred HHHhhCcCCCCCCCCCC---C-CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCC-CCCC-ce-eeCCcc
Q 007872 373 VAIAYGYNNIPKRKPAS---V-KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DEST-AV-VGNPRT 445 (586)
Q Consensus 373 Iar~yGydni~~~~p~~---~-~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~-~~~~-~v-l~NP~s 445 (586)
+++.|++| .++|.. . +.||.+++.+++|++|.++||+|+.++.+++..+++..++.+. +-.+ .+ |.||..
T Consensus 36 ~~~~~~~d---~~~P~~~~~~G~~HPl~~~~~~ir~~f~~mGF~e~~~p~ies~~~n~pq~ghpAr~~~D~tfyl~~p~~ 112 (549)
T 2du7_A 36 LIKDKHID---NKYPRLKPVYGKPHPVMETIERLRQAYLRMGFEEMINPVIVDEMEIYKQFGPEAMAVLDRCFYLAGLPR 112 (549)
T ss_dssp SSCCCTTT---TSSSSSCCCCCCCCHHHHHHHHHHHHHHTTTCEECCCCSCEEHHHHHHHTCTTHHHHGGGCCEEECCCC
T ss_pred hhhccCcC---CCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCeEeehHHhCCCcCCCcccccCceEEECCCCC
Confidence 45566666 344432 2 8999999999999999999999999999999998876653321 0123 67 998842
Q ss_pred --------------------------------------------------------------------C---------Cc
Q 007872 446 --------------------------------------------------------------------S---------DF 448 (586)
Q Consensus 446 --------------------------------------------------------------------~---------e~ 448 (586)
. ++
T Consensus 113 ~~~g~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~v~~~~~~~~s~g~~~~d~~~~e~~~~~~~~e~ 192 (549)
T 2du7_A 113 PDVGLGNEKVEIIKNLGIDIDEEKKERLREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETAFPEFKDLKPESTT 192 (549)
T ss_dssp CCCSSSSTTSCCSSCSCCCCSCCCSSSCCCSCCCSSSSCCCSSSCCSCCCSSSSCCSCSCCCSSSSSCTTSSSCCCCEEE
T ss_pred cccccchhhhhhhhhcccccccchhhhhhhhhhhhccCCCchhhhhhHhhhhhhcccccccccccccchhhccccccccc
Confidence 1 47
Q ss_pred hhhcccchHHHHHHHHhccCCCC-CeeEEEeCcEeecCCC-cccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHhCCC
Q 007872 449 EVVRTTLMPGILKTIGHNKDHPK-PIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 449 ~~lR~sLlpgLL~~l~~N~~~~~-~~~lFEiG~V~~~~~~-~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~lgi~ 526 (586)
++|||||+||||.++++|++|+. |+|+||+|+||+++.. +.++..+.++++++++|...+|+++||+|+++|+.+|+.
T Consensus 193 svLRTsLlPGLL~~vr~N~~r~~~pvrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~LGi~ 272 (549)
T 2du7_A 193 LTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQFGFT 272 (549)
T ss_dssp EECCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGGTCC
T ss_pred cccccccchhHHHHHHHHHhcCCCCeEEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 89999999999999999988765 6999999999987542 235667899999999999999999999999999999974
Q ss_pred CCCCCCCccEEEEec--CCCCccCCceEEEEEC-----C-EEEEEEEEeCHHHHHHCCCCcccccc
Q 007872 527 FVPVGDDTGYYIQRS--DEPEFLPGRQASITHK-----G-KHVGTFGIVHPEVMSSFEQSLKNISY 584 (586)
Q Consensus 527 ~~~~~~~~~~~~~~~--~~~~f~pgr~A~I~~~-----g-~~iG~~GelhP~vl~~~~l~~pv~~~ 584 (586)
. +.++++ .+++|||||+|+|.++ | +.||++|+|||+|+++|||+.|+++|
T Consensus 273 ~--------~rfrps~~~~p~yhPGr~AeI~v~~~g~~gw~eIG~~GeVHP~VLk~~gId~~v~aF 330 (549)
T 2du7_A 273 K--------FKFKPDEKKSKYYTPETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNIDVPVMNL 330 (549)
T ss_dssp C--------CCCEECTTCCTTBCTTTCEEEEECCSSSSCSEEEEEEEEBCHHHHHHTTCCSCEEEE
T ss_pred e--------EEEEECCCCCcccCCceEEEEEEecCCCCCcEEEEEEEEECHHHHHHcCCCCCeEEE
Confidence 2 566666 3688999999999996 5 79999999999999999999998765
No 11
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.96 E-value=7e-29 Score=270.64 Aligned_cols=196 Identities=13% Similarity=0.230 Sum_probs=162.3
Q ss_pred CCCCCCCCC---C-CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCC-CCCC-ce-eeCCcc--------
Q 007872 381 NIPKRKPAS---V-KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DEST-AV-VGNPRT-------- 445 (586)
Q Consensus 381 ni~~~~p~~---~-~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~-~~~~-~v-l~NP~s-------- 445 (586)
+|+.++|.. . +.+|.+++.++||++|.++||+|+.++.+++..+++..++.+. +..+ .+ |.||..
T Consensus 49 ~id~~~P~~~~~~G~~HPl~~~~~~IReif~~mGF~E~~~p~vese~~n~pq~gHPAR~~~D~tFyL~~P~~~~vg~~~~ 128 (685)
T 2odr_D 49 KINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDE 128 (685)
T ss_dssp CGGGSTTTCCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC--------
T ss_pred ccCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCEEeehHHhCCCcCCCccccCCcEEEECCCCCCccccchh
Confidence 345555543 2 8999999999999999999999999999999988865542211 0012 67 999851
Q ss_pred -----------------------------------------------------------C---------CchhhcccchH
Q 007872 446 -----------------------------------------------------------S---------DFEVVRTTLMP 457 (586)
Q Consensus 446 -----------------------------------------------------------~---------e~~~lR~sLlp 457 (586)
. ++++|||||+|
T Consensus 129 ~~~~i~~~g~~is~~~~~l~~~~h~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlP 208 (685)
T 2odr_D 129 KISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTS 208 (685)
T ss_dssp -------------------------------------------------------------CCCCCCBCCSEEECCCTHH
T ss_pred hhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchh
Confidence 1 47899999999
Q ss_pred HHHHHHHhccCCCC-CeeEEEeCcEeecCCC-cccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcc
Q 007872 458 GILKTIGHNKDHPK-PIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTG 535 (586)
Q Consensus 458 gLL~~l~~N~~~~~-~~~lFEiG~V~~~~~~-~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~ 535 (586)
|||.++++|++|+. |+|+||+|+||+.+.. +.++..+.++++++++|...+|+++||+|+++|+.+|+..
T Consensus 209 GLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~LGi~~-------- 280 (685)
T 2odr_D 209 GWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTN-------- 280 (685)
T ss_dssp HHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCCC--------
T ss_pred hHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCCCe--------
Confidence 99999999988765 6999999999986543 3345678999999999999999999999999999999742
Q ss_pred EEEEecC--CCCccCCceEEEEEC-----C-EEEEEEEEeCHHHHHHCCCCcccccc
Q 007872 536 YYIQRSD--EPEFLPGRQASITHK-----G-KHVGTFGIVHPEVMSSFEQSLKNISY 584 (586)
Q Consensus 536 ~~~~~~~--~~~f~pgr~A~I~~~-----g-~~iG~~GelhP~vl~~~~l~~pv~~~ 584 (586)
+.++++. +++|||||+|+|.++ | +.||++|+|||+|+++|||+.|+++|
T Consensus 281 vrfrpse~~~p~yHPGreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GId~~V~AF 337 (685)
T 2odr_D 281 FKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNL 337 (685)
T ss_dssp EEEEECTTCCTTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEEE
T ss_pred EEEEECCCCCCCcCCceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCEEEE
Confidence 7888763 788999999999985 4 79999999999999999999998765
No 12
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.96 E-value=6.2e-29 Score=270.70 Aligned_cols=186 Identities=12% Similarity=0.228 Sum_probs=157.8
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCC-CCCC-ce-eeCCcc----------------------
Q 007872 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DEST-AV-VGNPRT---------------------- 445 (586)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~-~~~~-~v-l~NP~s---------------------- 445 (586)
+.+|.+++.+++|++|.++||+|+.++.+++..+++..++.+. +..+ .+ |.||..
T Consensus 63 ~~HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyl~~P~~~~vg~~~~~~~~i~~~g~~is~ 142 (648)
T 2odr_B 63 KTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSE 142 (648)
T ss_dssp BCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC----------------------
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEeeCCEEeehhhhCCCcCCCccccCCceEEECCCCCCccccchhhhhhhhhcccccch
Confidence 8999999999999999999999999999999988865542211 0012 67 999851
Q ss_pred ---------------------------------------------C---------CchhhcccchHHHHHHHHhccCCCC
Q 007872 446 ---------------------------------------------S---------DFEVVRTTLMPGILKTIGHNKDHPK 471 (586)
Q Consensus 446 ---------------------------------------------~---------e~~~lR~sLlpgLL~~l~~N~~~~~ 471 (586)
. ++++|||||+||||.++++|++++.
T Consensus 143 ~~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~~~~sVLRTsLlPGLL~~vr~N~~R~~ 222 (648)
T 2odr_B 143 HKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKP 222 (648)
T ss_dssp -----------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSC
T ss_pred hhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccccccccCcccccchhhHHHHHHHHHhcCC
Confidence 1 4789999999999999999988765
Q ss_pred -CeeEEEeCcEeecCCC-cccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecC--CCCcc
Q 007872 472 -PIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSD--EPEFL 547 (586)
Q Consensus 472 -~~~lFEiG~V~~~~~~-~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~--~~~f~ 547 (586)
|+|+||+|+||+.+.. +.++..+.++++++++|...+|+++||+|+++|+.+|+.. +.++++. +++||
T Consensus 223 ~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~LGi~~--------vrfrpse~~~p~yh 294 (648)
T 2odr_B 223 LPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTN--------FKFIPDEKKSKYYT 294 (648)
T ss_dssp SCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCCC--------EEEEECTTCCTTBC
T ss_pred CCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCCCe--------EEEEECCCCCcCcC
Confidence 6999999999986543 3345678999999999999999999999999999999742 7888763 78899
Q ss_pred CCceEEEEEC-----C-EEEEEEEEeCHHHHHHCCCCcccccc
Q 007872 548 PGRQASITHK-----G-KHVGTFGIVHPEVMSSFEQSLKNISY 584 (586)
Q Consensus 548 pgr~A~I~~~-----g-~~iG~~GelhP~vl~~~~l~~pv~~~ 584 (586)
|||+|+|.++ | +.||++|+|||+|+++|||+.|+++|
T Consensus 295 PGreAEI~v~~~g~~GW~EIG~~GeVHP~VLk~~GId~~V~AF 337 (648)
T 2odr_B 295 PETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNL 337 (648)
T ss_dssp TTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEEE
T ss_pred CceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCEEEE
Confidence 9999999985 4 79999999999999999999998765
No 13
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.96 E-value=6.6e-29 Score=270.64 Aligned_cols=196 Identities=13% Similarity=0.230 Sum_probs=162.1
Q ss_pred CCCCCCCCC---C-CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCC-CCCC-ce-eeCCcc--------
Q 007872 381 NIPKRKPAS---V-KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DEST-AV-VGNPRT-------- 445 (586)
Q Consensus 381 ni~~~~p~~---~-~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~-~~~~-~v-l~NP~s-------- 445 (586)
+|+.++|.. . +.+|.+++.+++|++|.++||+|+.++.+++..+++..++.+. +..+ .+ |.||..
T Consensus 49 ~id~~~P~~~~~~G~~HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyL~~P~~~~vg~~~~ 128 (665)
T 2odr_A 49 KINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDE 128 (665)
T ss_dssp CTTTSGGGSCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC--------
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchh
Confidence 344555532 2 8999999999999999999999999999999988865542211 0012 67 999851
Q ss_pred -----------------------------------------------------------C---------CchhhcccchH
Q 007872 446 -----------------------------------------------------------S---------DFEVVRTTLMP 457 (586)
Q Consensus 446 -----------------------------------------------------------~---------e~~~lR~sLlp 457 (586)
. ++++|||||+|
T Consensus 129 ~~~~i~~~g~~is~~~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~a~~sVLRTSLlP 208 (665)
T 2odr_A 129 KISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTS 208 (665)
T ss_dssp -------------------------------------------------------------CCCCCCBCCSEEECCCTHH
T ss_pred hhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchh
Confidence 1 47899999999
Q ss_pred HHHHHHHhccCCCC-CeeEEEeCcEeecCCC-cccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcc
Q 007872 458 GILKTIGHNKDHPK-PIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTG 535 (586)
Q Consensus 458 gLL~~l~~N~~~~~-~~~lFEiG~V~~~~~~-~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~ 535 (586)
|||.++++|++++. |+|+||+|+||+.+.. +.++..+.++++++++|...+|+++||+|+++|+.+|+..
T Consensus 209 GLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~LGi~~-------- 280 (665)
T 2odr_A 209 GWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTN-------- 280 (665)
T ss_dssp HHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCCC--------
T ss_pred hHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCCCe--------
Confidence 99999999988765 6999999999986543 3345678999999999999999999999999999999742
Q ss_pred EEEEecC--CCCccCCceEEEEEC-----C-EEEEEEEEeCHHHHHHCCCCcccccc
Q 007872 536 YYIQRSD--EPEFLPGRQASITHK-----G-KHVGTFGIVHPEVMSSFEQSLKNISY 584 (586)
Q Consensus 536 ~~~~~~~--~~~f~pgr~A~I~~~-----g-~~iG~~GelhP~vl~~~~l~~pv~~~ 584 (586)
+.++++. +++|||||+|+|.++ | +.||++|+|||+|+++|||+.|+++|
T Consensus 281 vrfrpse~~~p~yhPGreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GId~~V~AF 337 (665)
T 2odr_A 281 FKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNL 337 (665)
T ss_dssp EEEEECTTCCTTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEEE
T ss_pred EEEEECCCCCCCcCCceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCEEEE
Confidence 7888763 788999999999985 4 79999999999999999999998765
No 14
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.96 E-value=7.9e-29 Score=270.79 Aligned_cols=196 Identities=13% Similarity=0.230 Sum_probs=162.4
Q ss_pred CCCCCCCCC---C-CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCC-CCCC-ce-eeCCcc--------
Q 007872 381 NIPKRKPAS---V-KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQT-DEST-AV-VGNPRT-------- 445 (586)
Q Consensus 381 ni~~~~p~~---~-~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~-~~~~-~v-l~NP~s-------- 445 (586)
+|+.++|.. . +.+|.+++.+++|++|.++||+|+.++.+++..+++..++.+. +..+ .+ |.||..
T Consensus 49 ~id~~~P~~~~~~G~~HPl~~~~~~IReif~~mGF~Ev~~p~Vese~~n~pq~gHPAR~~~D~tFYL~~P~~~~vg~~~~ 128 (701)
T 2odr_C 49 KINESYPRIKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDE 128 (701)
T ss_dssp CTTTSSTTCCCCCCBCCHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEECCC--------
T ss_pred ccCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchh
Confidence 445556643 2 8999999999999999999999999999999988865542211 0012 67 998851
Q ss_pred -----------------------------------------------------------C---------CchhhcccchH
Q 007872 446 -----------------------------------------------------------S---------DFEVVRTTLMP 457 (586)
Q Consensus 446 -----------------------------------------------------------~---------e~~~lR~sLlp 457 (586)
. ++++|||||+|
T Consensus 129 ~~~~i~~~g~~is~~~~~l~~~~h~yk~~~~~~~dlv~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlP 208 (701)
T 2odr_C 129 KISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTS 208 (701)
T ss_dssp -------------------------------------------------------------CCCCCCEEEEEEECCCTHH
T ss_pred hhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchh
Confidence 1 37899999999
Q ss_pred HHHHHHHhccCCCC-CeeEEEeCcEeecCCC-cccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCcc
Q 007872 458 GILKTIGHNKDHPK-PIKIYEVGDVVLLDEK-KDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTG 535 (586)
Q Consensus 458 gLL~~l~~N~~~~~-~~~lFEiG~V~~~~~~-~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~ 535 (586)
|||.++++|++|+. |+|+||+|+||+.+.. +.++..+.++++++++|...+|+++||+|+++|+.+|+..
T Consensus 209 GLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~LGi~~-------- 280 (701)
T 2odr_C 209 GWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQFGFTN-------- 280 (701)
T ss_dssp HHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTTTCCC--------
T ss_pred hHHHHHHHHHhCCCCCeEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHcCCCe--------
Confidence 99999999988765 6999999999986543 3345678999999999999999999999999999999742
Q ss_pred EEEEecC--CCCccCCceEEEEEC-----C-EEEEEEEEeCHHHHHHCCCCcccccc
Q 007872 536 YYIQRSD--EPEFLPGRQASITHK-----G-KHVGTFGIVHPEVMSSFEQSLKNISY 584 (586)
Q Consensus 536 ~~~~~~~--~~~f~pgr~A~I~~~-----g-~~iG~~GelhP~vl~~~~l~~pv~~~ 584 (586)
+.++++. +++|||||+|+|.++ | +.||++|+|||+|+++|||+.|+++|
T Consensus 281 vrfrpse~~~p~yHPGreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GId~~V~AF 337 (701)
T 2odr_C 281 FKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVPVMNL 337 (701)
T ss_dssp EEEEECTTCCTTBCTTCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSCEEEE
T ss_pred EEEEECCCCCCCcCCceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCCEEEE
Confidence 7888763 788999999999985 4 79999999999999999999998765
No 15
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.95 E-value=1.9e-27 Score=248.42 Aligned_cols=194 Identities=15% Similarity=0.159 Sum_probs=161.7
Q ss_pred CCCCCCCCCCC----CCChHHHHHHHHHHHHHHCCceEEecccccCh-HHHHHHcCCCCCC-----CCce-eeCCcc---
Q 007872 380 NNIPKRKPASV----KPLALNEFSDLMRLEIAMNGFTEVLTWILCSS-KEISTMLNRQTDE-----STAV-VGNPRT--- 445 (586)
Q Consensus 380 dni~~~~p~~~----~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~-~~~~~~l~~~~~~-----~~~v-l~NP~s--- 445 (586)
++|+.++|... ..+|.+++.+.+|++|+++||+|+. ++++.. ..+|+.++.+.+. .+.+ |.||+|
T Consensus 84 ~~i~~tlP~~~~~~g~~hp~~~~~~~Ir~~f~~~Gf~Ev~-~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~ 162 (350)
T 1b7y_A 84 ERVDVSLPGASLFSGGLHPITLMERELVEIFRALGYQAVE-GPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLE 162 (350)
T ss_dssp --CCTTSCCCCCCCCBCCHHHHHHHHHHHHHHTTTCEECC-CCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCB
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEE-CcchhcchhHHHhhCCCCCCccccccccEEEcCcccccc
Confidence 47787777422 7889999999999999999999999 777755 4466777654321 3568 999999
Q ss_pred -------CCchhhcccchHHHHHHHHhccCCCCCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHH
Q 007872 446 -------SDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDR 518 (586)
Q Consensus 446 -------~e~~~lR~sLlpgLL~~l~~N~~~~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ 518 (586)
+++.+||||++|+++++++++ ..|+|+||+|+||+.+..+.++..+.++++++++|...+|+++||.|+.
T Consensus 163 ~~~~~~~~~~~vLRt~tsp~llr~l~~~---~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ 239 (350)
T 1b7y_A 163 GPLGEEVEGRLLLRTHTSPMQVRYMVAH---TPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYE 239 (350)
T ss_dssp CTTSCBCCSCEEECSSSTHHHHHHHHHC---CSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETTCCHHHHHHHHHH
T ss_pred ccccccccccceeeccchHHHHHHHHhc---CCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCCCCHHHHHHHHHH
Confidence 699999999999999999983 4579999999999876533456678899999999999999999999999
Q ss_pred HHHHh-CCCCCCCCCCccEEEEecCCCCccCCceEEEEE--CC--EEEEEEEEeCHHHHHHC-------CCCc-----cc
Q 007872 519 IMEVI-GTPFVPVGDDTGYYIQRSDEPEFLPGRQASITH--KG--KHVGTFGIVHPEVMSSF-------EQSL-----KN 581 (586)
Q Consensus 519 ll~~l-gi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~--~g--~~iG~~GelhP~vl~~~-------~l~~-----pv 581 (586)
+++.+ |.+. .+.++++.+|.+|||++++|++ +| ..||++|+|||+|++++ ||+. |+
T Consensus 240 ll~~lfG~~~-------~~r~rps~fPft~Ps~e~~i~~~~~g~w~eIg~~G~VhP~Vl~~~~~~~~~~gid~~~~~~~~ 312 (350)
T 1b7y_A 240 LAQALFGPDS-------KVRFQPVYFPFVEPGAQFAVWWPEGGKWLELGGAGMVHPKVFQAVDAYRERLGLPPAYRGVTG 312 (350)
T ss_dssp HHHHHSCSSC-------CEEEEECCBTTEEEEEEEEEEETTTTEEEEEEEEEEECHHHHHHHHHHHHHTTCCCCCTTCEE
T ss_pred HHHhhcCCCc-------eEEEecCCCCCCCCccEEEEEEEeCCCeEEEEEEEEEeHHHHHhhccccccCCCCCccccceE
Confidence 99988 8642 1788898889999999999998 88 78999999999999999 9974 66
Q ss_pred ccc
Q 007872 582 ISY 584 (586)
Q Consensus 582 ~~~ 584 (586)
++|
T Consensus 313 ~af 315 (350)
T 1b7y_A 313 FAF 315 (350)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 16
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.95 E-value=1.2e-27 Score=247.24 Aligned_cols=188 Identities=16% Similarity=0.169 Sum_probs=159.9
Q ss_pred cCCCCCCCCCCC----CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCC-----CCce-eeCCccCCc
Q 007872 379 YNNIPKRKPASV----KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDE-----STAV-VGNPRTSDF 448 (586)
Q Consensus 379 ydni~~~~p~~~----~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~-----~~~v-l~NP~s~e~ 448 (586)
=++|+.++|... ..+|.+++.+++|++|+++||+|+.++.+.+...+|+.|+.+.+. .+.+ | | ++
T Consensus 89 ~e~id~TLP~~~~~~G~~hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i-~----e~ 163 (327)
T 3pco_A 89 AETIDVSLPGRRIENGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF-D----TT 163 (327)
T ss_dssp TTCCCTTSCCCCCCCCCCCHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBS-S----SS
T ss_pred hCCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEe-C----CC
Confidence 478999998642 889999999999999999999999999998888889988877542 1234 4 2 78
Q ss_pred hhhcccchHHHHHHHHhccCCCCCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHh-C--C
Q 007872 449 EVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI-G--T 525 (586)
Q Consensus 449 ~~lR~sLlpgLL~~l~~N~~~~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~l-g--i 525 (586)
++|||+++|++++++++| ..|+++||+|+||+.+ .+.++....+++.+++.++..+|+++||+|+.+++.+ | +
T Consensus 164 ~vLRThtsp~~lr~l~~~---~~pirifeiGrVyR~d-~d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lfg~~~ 239 (327)
T 3pco_A 164 RLLRTQTSGVQIRTMKAQ---QPPIRIIAPGRVYRND-YDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFEEDL 239 (327)
T ss_dssp CEECSCTHHHHHHHHTTC---CSSCCBCCEECCBCSC-CBTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHHCSCS
T ss_pred ceecccCCHHHHHHHHhC---CCCeeEEeeccEEecC-CCcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999874 3579999999999886 3345555677888889999999999999999999998 3 3
Q ss_pred CCCCCCCCccEEEEecCCCCccCCceEEEEE-CCE--EEEEEEEeCHHHHHHCCCCcc---cccc
Q 007872 526 PFVPVGDDTGYYIQRSDEPEFLPGRQASITH-KGK--HVGTFGIVHPEVMSSFEQSLK---NISY 584 (586)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~-~g~--~iG~~GelhP~vl~~~~l~~p---v~~~ 584 (586)
+ +.++++..|++|||++|+|++ +|+ .||++|+|||+|++++||+.+ +++|
T Consensus 240 ~---------vr~rps~fPftePs~eadI~~~~G~w~EIgg~G~VHP~Vl~~~gid~~~~~g~AF 295 (327)
T 3pco_A 240 Q---------IRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVHPNVLRNVGIDPEVYSGFAF 295 (327)
T ss_dssp E---------EEEEEECCTTEEEEEEEEEECSSSCEEEEEEEEEECHHHHHTTTCCTTTCEEEEE
T ss_pred e---------EEEecCcCCCCCCcEEEEEEEeCCCeEEEEEEEEECHHHHHHcCCCCccceEEEE
Confidence 3 788999999999999999999 775 899999999999999999965 5554
No 17
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.95 E-value=6.1e-27 Score=240.47 Aligned_cols=174 Identities=14% Similarity=0.186 Sum_probs=144.5
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCceeeCCccC------CchhhcccchHHHHHHHH
Q 007872 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTS------DFEVVRTTLMPGILKTIG 464 (586)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~vl~NP~s~------e~~~lR~sLlpgLL~~l~ 464 (586)
..++.+++.+.+|+.|.++||+|+.||+|++.+ .++.++.+. .||+++ +..+||||++|+|+++++
T Consensus 75 ~~~~~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~-~~~~~~~~~-------~~p~~~~~~~~~~~~~LR~slsp~L~~~l~ 146 (290)
T 3qtc_A 75 RENYLGKLEREITRFFVDRGFLEIKSPILIPLE-YIERMGIDN-------DTELSKQIFRVDKNFCLRPMLTPNLYNYLR 146 (290)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCEEECCCSEEETH-HHHHTTCCT-------TSSGGGGCCEETTTEEECSCSHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHCCCEEEECCceeeHH-HHHhcCCCc-------CCchhhhheeeCCCeeEcccChHHHHHHHH
Confidence 677889999999999999999999999999986 455554332 244443 789999999999999999
Q ss_pred hccCCC-CCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCC
Q 007872 465 HNKDHP-KPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDE 543 (586)
Q Consensus 465 ~N~~~~-~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~ 543 (586)
+|.++. .|+|+||+|+||+.+.......++..++++.++|...+|+++||+++.+|+.+|++ |.+. ++
T Consensus 147 ~n~~~~~~p~rlfeiG~vFR~E~~~~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~lGl~---------~~~~--~~ 215 (290)
T 3qtc_A 147 KLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHLGID---------FKIV--GD 215 (290)
T ss_dssp HHTTTSCSSEEEEEEEEEECCCSCSSSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHHHHTCC---------CEEE--C-
T ss_pred HhhccCCCCeEEEEEcCEEecCCCCCcCcchheEEEEEEEcCChHHHHHHHHHHHHHHHcCCC---------cEEe--CC
Confidence 998764 57999999999987654334567888999999999899999999999999999997 5665 56
Q ss_pred CCccCCceEEEEECCEEEEEEEEeCHHHH-HHCCCCcccccc
Q 007872 544 PEFLPGRQASITHKGKHVGTFGIVHPEVM-SSFEQSLKNISY 584 (586)
Q Consensus 544 ~~f~pgr~A~I~~~g~~iG~~GelhP~vl-~~~~l~~pv~~~ 584 (586)
+.|||||||+|+++|+.||+ |+|||+|+ ++|||+.|++++
T Consensus 216 ~~~hpgr~a~i~~~~~~iG~-G~lhP~vl~~~~~i~~~v~~~ 256 (290)
T 3qtc_A 216 SCMVFGDTLDVMHGDLELSS-ALVGPIPLDREWGIDKPWIGA 256 (290)
T ss_dssp -----CEEEEEEETTEEEEE-EEESCCGGGGGGTCCSCEEEE
T ss_pred CccccCCcccEeeCCEEEEE-EEecHHHHHHhCCCCCceEEE
Confidence 88999999999999999999 99999999 899999998764
No 18
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=99.94 E-value=5.6e-27 Score=253.68 Aligned_cols=201 Identities=15% Similarity=0.176 Sum_probs=169.2
Q ss_pred HhhCcCCCCCCCCCCCCCChHHHHHHHHHHHHHHCCceEEeccccc-ChHHHHHHcCCCCCC-----CCce-eeCCccC-
Q 007872 375 IAYGYNNIPKRKPASVKPLALNEFSDLMRLEIAMNGFTEVLTWILC-SSKEISTMLNRQTDE-----STAV-VGNPRTS- 446 (586)
Q Consensus 375 r~yGydni~~~~p~~~~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~-s~~~~~~~l~~~~~~-----~~~v-l~NP~s~- 446 (586)
|.|+|+...+..+ ....+|.+++.+.+|++|.++||+|+++.+++ +...+|+.|+.+.+. .+.+ |.||++.
T Consensus 208 ~~y~~~~~g~~~~-~G~lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~ 286 (508)
T 3l4g_A 208 KPYNFLAHGVLPD-SGHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEAL 286 (508)
T ss_dssp CCCCSSSCCCCCC-CCBCCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCS
T ss_pred eecccCCCCCCCC-CCCCCHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccc
Confidence 6788887765332 12899999999999999999999999974444 455688999876542 2458 9999865
Q ss_pred ---------------------------------CchhhcccchHHHHHHHHhccC-CC-CCeeEEEeCcEeecCCCcccc
Q 007872 447 ---------------------------------DFEVVRTTLMPGILKTIGHNKD-HP-KPIKIYEVGDVVLLDEKKDVG 491 (586)
Q Consensus 447 ---------------------------------e~~~lR~sLlpgLL~~l~~N~~-~~-~~~~lFEiG~V~~~~~~~~~g 491 (586)
+.++|||+++|++++++++|.+ ++ .|+|+||+|+||+.+..+.++
T Consensus 287 ~~~e~~~~~v~~~He~g~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~DatH 366 (508)
T 3l4g_A 287 QLPMDYVQRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATH 366 (508)
T ss_dssp CCCHHHHHHHHHHHHTCBTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSSS
T ss_pred cccHHHHHhhhhhhhccccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCCc
Confidence 5799999999999999999987 44 579999999999987655566
Q ss_pred cccccEEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCccCCceEEEEECC----EEEEEEEEe
Q 007872 492 ASCRRRLAALYCGANSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKG----KHVGTFGIV 567 (586)
Q Consensus 492 ~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g----~~iG~~Gel 567 (586)
..+.+++.+++++...+|+++||+|+.+++.+|+.. +.++++..|++||++.+.++++| ..||.+|++
T Consensus 367 lpeFhQlegl~~~~~v~f~dLKg~Le~~l~~lG~~~--------~rfrps~fPftePS~ev~i~~~G~~~W~EIGg~G~v 438 (508)
T 3l4g_A 367 LAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGITQ--------LRFKPAYNPYTEPSMEVFSYHQGLKKWVEVGNSGVF 438 (508)
T ss_dssp CSEEEEEEEEEEEESCCHHHHHHHHHHHHHTTTCCC--------CEEEECCCTTCSSEEEEEECCSTTSSCEEEEEEECC
T ss_pred CCeEEEEEEEEECCCCCHHHHHHHHHHHHHHcCCcc--------eEeeccCCCCCCCeEEEEEEECCccceEEEEeeeeE
Confidence 677899999999999999999999999999999742 68899999999998888888777 699999999
Q ss_pred CHHHHHHCCCC--cccccc
Q 007872 568 HPEVMSSFEQS--LKNISY 584 (586)
Q Consensus 568 hP~vl~~~~l~--~pv~~~ 584 (586)
||+|++++||+ +|+++|
T Consensus 439 hP~VL~~~Gipe~~~v~Af 457 (508)
T 3l4g_A 439 RPEMLLPMGLPENVSVIAW 457 (508)
T ss_dssp CHHHHGGGTCCTTEEEEEE
T ss_pred cHHHHHHCCCCCCceEEEE
Confidence 99999999996 588776
No 19
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=99.91 E-value=3.2e-24 Score=229.25 Aligned_cols=188 Identities=12% Similarity=0.077 Sum_probs=150.8
Q ss_pred cCCCCCC---CCCCC----CCChHHHHHHHHHHHHHHC--------CceEEec-ccccChHHHHHHcCCCCCC-----CC
Q 007872 379 YNNIPKR---KPASV----KPLALNEFSDLMRLEIAMN--------GFTEVLT-WILCSSKEISTMLNRQTDE-----ST 437 (586)
Q Consensus 379 ydni~~~---~p~~~----~~~~~~~~~~~lr~~l~~~--------Gf~Ev~t-~sl~s~~~~~~~l~~~~~~-----~~ 437 (586)
|+|++++ .|... ..||.+++.+.||++|+++ ||+|+.+ +.++|..++|+.|+.+.+. .+
T Consensus 27 ~~ni~~~~~~~~~~~~~~g~~hPl~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~D 106 (415)
T 3cmq_A 27 HSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGD 106 (415)
T ss_dssp SCCCCHHHHTTTTCCGGGSTTCHHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGG
T ss_pred cccCChhhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccc
Confidence 7899876 55322 8999999999999999999 9999999 9999999999999877542 12
Q ss_pred ce-eeCCccCCchhhcccchHHHHHHHHhccCCCCCeeEEEeCcEeecCCCcccccc---------------------cc
Q 007872 438 AV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVGAS---------------------CR 495 (586)
Q Consensus 438 ~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~~lFEiG~V~~~~~~~~~g~~---------------------~~ 495 (586)
.+ | | +..+|||++.|+++++++.|. | |+||+|+||++|..+.+... +.
T Consensus 107 tfyi-~----~~~vLRThts~~~~~~l~~~~----~-k~~~~G~VyR~D~~da~h~n~fhQ~egv~lfe~g~~f~~~~~~ 176 (415)
T 3cmq_A 107 NYYL-N----RTHMLRAHTSAHQWDLLHAGL----D-AFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAGIKDG 176 (415)
T ss_dssp SCBS-S----SSEEECSSGGGGHHHHHHTTC----S-EEEEEEEEECCCCCBTTBCSEEEEEEEEEEEEHHHHTTTSTTG
T ss_pred eEEe-c----CCeEEcCCCcHHHHHHHHHCC----C-CEEEeeeEEeccchhhhhhHHhcCCCcEEEEeccceecccccc
Confidence 23 4 2 458999999999999999872 3 99999999998853222111 13
Q ss_pred cEEEEEEcCCC--------------CCHHHHHHHHHHHHHHh-CCCCCCCCCCccEEEEecCCCCccCCceEEEEECCE-
Q 007872 496 RRLAALYCGAN--------------SGFELIHCLVDRIMEVI-GTPFVPVGDDTGYYIQRSDEPEFLPGRQASITHKGK- 559 (586)
Q Consensus 496 ~~l~~~~~~~~--------------~~f~~ikg~le~ll~~l-gi~~~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g~- 559 (586)
++++++++|.. ++|+++||+|+++++.+ |++.. +.++++.+|+|||||+|+|+++|+
T Consensus 177 ~~la~~~~g~~~~~~~~~~~~~~vd~~f~dlKg~le~ll~~lfg~~~~-------~~~~~~~~p~~hPgr~a~I~~~g~w 249 (415)
T 3cmq_A 177 ESLQLFEQSSRSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFGDELE-------IRWVDCYFPFTHPSFEMEINFHGEW 249 (415)
T ss_dssp GGCCSBCCCCCCSSCCTTBCHHHHHHHHHHHHHHHHHHHHHHHCTTCC-------EEEEEEEETTEEEEEEEEEEETTEE
T ss_pred ceEEEEEecCcccccccccccccccccHHHHHHHHHHHHHHHcCCCce-------EEEecCCCCCCCCceEEEEEECCee
Confidence 34555555542 24999999999999987 98531 778888889999999999999999
Q ss_pred --EEEEEEEeCHHHHHHCCCCccc-ccc
Q 007872 560 --HVGTFGIVHPEVMSSFEQSLKN-ISY 584 (586)
Q Consensus 560 --~iG~~GelhP~vl~~~~l~~pv-~~~ 584 (586)
.+|+ |+|||+|+++|||+.|+ +++
T Consensus 250 lE~lG~-G~lhP~Vl~~~gl~~~vg~af 276 (415)
T 3cmq_A 250 LEVLGC-GVMEQQLVNSAGAQDRIGWAF 276 (415)
T ss_dssp EEEEEE-EEECHHHHHHTTCTTEEEEEE
T ss_pred EEEEEE-EEeCHHHHHHcCCCCcceEEE
Confidence 8999 99999999999998887 553
No 20
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.90 E-value=2.5e-23 Score=212.89 Aligned_cols=180 Identities=13% Similarity=0.158 Sum_probs=151.0
Q ss_pred CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCC
Q 007872 391 KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH 469 (586)
Q Consensus 391 ~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~ 469 (586)
+.++.+++.+.+|+.|.++||+|++|++|.+.+. +..++...+ .+.+ +.||+++++ +|||++.|+++.++++|.++
T Consensus 69 ~~h~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l-~~~~g~~~~-~~m~~~~npl~e~~-~LRp~l~p~l~~~~r~~~~~ 145 (288)
T 3dsq_A 69 HRPALLELEEKLAKALHQQGFVQVVTPTIITKSA-LAKMTIGED-HPLFSQVFWLDGKK-CLRPMLAPNLYTLWRELERL 145 (288)
T ss_dssp SSCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHH-HHTTSSCC---CCTTTSCEEETTE-EECSCSHHHHHHHHHHHTTT
T ss_pred CcCHHHHHHHHHHHHHHHCCCEEEECCeeecHHH-HhhcCCCcc-cccEEeecccccch-hhhhcChHHHHHHHHHHHhC
Confidence 7888999999999999999999999999999875 333333221 2467 899999887 99999999999999999764
Q ss_pred -CCCeeEEEeCcEeecCCCcccccccccEEEEEEcCC--CCCHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEecCCCCc
Q 007872 470 -PKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGA--NSGFELIHCLVDRIMEVIGTPFVPVGDDTGYYIQRSDEPEF 546 (586)
Q Consensus 470 -~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~--~~~f~~ikg~le~ll~~lgi~~~~~~~~~~~~~~~~~~~~f 546 (586)
..|+|+||+|+||+.+....+..++..++++.+.|. ..+|+++||+++.+++.||++. |.+.+.+. .
T Consensus 146 ~~~PlrlfeiG~vFR~E~~~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~LGl~~--------~~~~~~s~--e 215 (288)
T 3dsq_A 146 WDKPIRIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIRE--------FELVTESS--V 215 (288)
T ss_dssp SCSCEEEEEEEEEECSCCSSSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHHTCCC--------CEEEECCC--C
T ss_pred CCCCEEEEEEeeEEecCCCCCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHcCCCC--------cEEecCCc--c
Confidence 458999999999987655444557888999988887 6789999999999999999952 67766443 4
Q ss_pred cCCceEEEEECCEEEEEEEEeCHHHH-HHCCCCcccccc
Q 007872 547 LPGRQASITHKGKHVGTFGIVHPEVM-SSFEQSLKNISY 584 (586)
Q Consensus 547 ~pgr~A~I~~~g~~iG~~GelhP~vl-~~~~l~~pv~~~ 584 (586)
++|+||++..+|..||.+| +||.++ ++|||+.|+++|
T Consensus 216 ~~~~~~~l~~~~~eig~~G-v~p~vl~~~~gi~~~~~gf 253 (288)
T 3dsq_A 216 VYGDTVDVMKGDLELASGA-MGPHFLDEKWEIFDPWVGL 253 (288)
T ss_dssp SSCCCEEEEETTEEEEEEE-EESCTTTTTTTCCSCEEEE
T ss_pred eEEEEEEEEeCCEEEEEEE-ecHHHHHHhcCCCCCeEEE
Confidence 7799999999999999999 999999 999999898765
No 21
>3hj7_A TRNA(Ile)-lysidine synthase; helix-turn-helix, pseudo-knot, ATP-binding, ligase, nucleoti binding, tRNA processing; 2.20A {Geobacillus kaustophilus}
Probab=97.73 E-value=4.9e-05 Score=68.98 Aligned_cols=83 Identities=13% Similarity=0.183 Sum_probs=64.2
Q ss_pred eh-hhcccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCcceEEEeCCCCeeeecCcccC
Q 007872 163 TH-DLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIING 241 (586)
Q Consensus 163 n~-Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~VI~D~~~~~lslagIigg 241 (586)
-+ |+|++.+|+.++...+++ +|+|++.....+.++++. +.+.... ..+.+|+|+|+++++++++|+-.+
T Consensus 43 ~~~D~dki~~pL~vR~r~~GD-r~~p~g~~g~KkLKklf~----d~kIP~~-----~R~~~Pll~~~~~~IiwV~G~~~s 112 (142)
T 3hj7_A 43 FVVDPASVSLPLRVRTRRRGD-RMVLKGTGGTKKLKEIFI----EAKIPRM-----ERDRWPIVEDADGRILWVPGLKKS 112 (142)
T ss_dssp EEECGGGSCSSEEEECCCTTC-EEEBSTTCCEEEHHHHHH----HTTCCHH-----HHTTCCEEECTTCCEEEETTTEEB
T ss_pred EEECHHHCCCCEEEEecCCCC-EEEECCCCCCccHHHHHH----HcCCCHH-----HhCCceEEEECCCeEEEEeCeeec
Confidence 46 999999999999888776 899997654456666664 3333321 235679999965579999999999
Q ss_pred CcceeccCCceEEE
Q 007872 242 AHSAITLKTKNVFI 255 (586)
Q Consensus 242 ~~s~It~~T~nI~i 255 (586)
+..+++++|++|+.
T Consensus 113 ~~~kv~~~T~~vl~ 126 (142)
T 3hj7_A 113 AFEAQNRGQARYIL 126 (142)
T ss_dssp TTSCCCSCCSCEEE
T ss_pred cceeeCCCCCEEEE
Confidence 99999999999763
No 22
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=97.52 E-value=0.0005 Score=74.54 Aligned_cols=147 Identities=14% Similarity=0.070 Sum_probs=98.6
Q ss_pred hCcCCCCCCCCCCC-CCCh-----HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCC-ce-eeCCc----
Q 007872 377 YGYNNIPKRKPASV-KPLA-----LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDEST-AV-VGNPR---- 444 (586)
Q Consensus 377 yGydni~~~~p~~~-~~~~-----~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~-~v-l~NP~---- 444 (586)
....+|....|+-. -..| .+.+.+.+|+.+...||+|+.|..|-..+..... + .. .++ .+ +.+..
T Consensus 5 ~~~~~~~~~~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~-G-~~-~ke~m~~~~d~~~~g~ 81 (465)
T 3net_A 5 AKNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-G-NQ-GDNIIYGLEPILPPNR 81 (465)
T ss_dssp ----CCCCSCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGG-G-CC---CBEEEEEEEC----
T ss_pred cCCccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhcc-C-CC-CccceEEEeccccccc
Confidence 34567777777644 3333 3467899999999999999999999877643332 3 22 244 56 76653
Q ss_pred ----------cCCchhhcccchHHHHHHHHhccC-CCCCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHH---
Q 007872 445 ----------TSDFEVVRTTLMPGILKTIGHNKD-HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFE--- 510 (586)
Q Consensus 445 ----------s~e~~~lR~sLlpgLL~~l~~N~~-~~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~--- 510 (586)
+.+.-.||+-+.|++.+.++.|.+ ...|+|+|.+|.||+.+.......++..++++=+.|...-..
T Consensus 82 ~~~~~~~~~~~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~~~~a~~D 161 (465)
T 3net_A 82 QAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYD 161 (465)
T ss_dssp ------------CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSSCCCHHHH
T ss_pred ccccccccCCCCCEEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECCCCccchhh
Confidence 245568999999999999999875 356899999999998764433345677777775555433222
Q ss_pred -HHHHHHHHHHHHhCCC
Q 007872 511 -LIHCLVDRIMEVIGTP 526 (586)
Q Consensus 511 -~ikg~le~ll~~lgi~ 526 (586)
++-.++..+|+.+|++
T Consensus 162 aEvi~l~~~~l~~lgl~ 178 (465)
T 3net_A 162 AQMPAIITEIFEAVNIG 178 (465)
T ss_dssp HHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 5667888899999986
No 23
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=97.51 E-value=0.0007 Score=70.50 Aligned_cols=130 Identities=9% Similarity=0.110 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHH-cCC--CCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTM-LNR--QTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH 469 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~-l~~--~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~ 469 (586)
..+++++.+|+.+...||+|+.|..|-..+. +.. +.. ....++.+ +..+ +.+.-+||+-+.|++.+.++.| ..
T Consensus 38 ~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el-~~~s~~g~~~~~~~~my~~~D~-~g~~l~LRpd~T~~~aR~~~~~-~~ 114 (344)
T 1z7m_A 38 SLRQIEGRLRKLFSLKNYQEVMPPSFEYTQL-YTALESNGKTFNQEKMFQFIKH-EGQSITLRYDFTLPLVRLYSQI-KD 114 (344)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEEHHH-HHHHHCSSSCCCTTSCCEEECT-TCCEEEECCCSHHHHHHHHHTC-CS
T ss_pred HHHHHHHHHHHHHHHcCCEEecCcccCcHHH-HhhccCCccccccccEEEEECC-CCCEEecCCCCcHHHHHHHHhc-CC
Confidence 4557889999999999999999999988663 432 111 11123455 6655 4455689999999999999998 55
Q ss_pred CCCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCH--HHHHHHHHHHHHHhCCC
Q 007872 470 PKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGF--ELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f--~~ikg~le~ll~~lgi~ 526 (586)
..|+|+|++|.||+.+.......++..++.+=+.|...-. .++-.++..+++.+|++
T Consensus 115 ~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~~~~aDaEvi~l~~~~l~~lgl~ 173 (344)
T 1z7m_A 115 STSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQLGLN 173 (344)
T ss_dssp CCCEEEEEEEECCCCCC-------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCC
Confidence 5799999999999865433234567777777666653222 35667888899999986
No 24
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=97.26 E-value=0.0018 Score=69.36 Aligned_cols=130 Identities=12% Similarity=0.066 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHH-cCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTM-LNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPK 471 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~-l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~ 471 (586)
..+++++.+|+.+...||+|+.|..|...+. +.. .+.. ..++.+ +... +.+.=+||+.+.|++....+.|.....
T Consensus 22 ~~~~i~~~i~~~~~~~G~~ei~tP~le~~el-~~~~~G~~-~~~em~~~~D~-~g~~l~LrPd~t~~~aR~~~~~~~~~l 98 (434)
T 1wu7_A 22 VEKFIFKTAEEAAEAFGFRRIDFPSLEYLDL-YRIKSGEE-LLQQTYSFVDK-GGREVTLIPEATPSTVRMVTSRKDLQR 98 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCEECBCCSEEETHH-HHTTSCTT-GGGGSCEEECT-TSCEEEECSCSHHHHHHHHTTCTTCCS
T ss_pred HHHHHHHHHHHHHHHcCCEEeeccccccHHH-hhhccCCc-cccceEEEECC-CCCEEEeCCCChHHHHHHHHhcCCCCC
Confidence 3457889999999999999999999988654 332 2221 123445 6654 445568999999999999998832346
Q ss_pred CeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCC--HHHHHHHHHHHHHHhCCC
Q 007872 472 PIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSG--FELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 472 ~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~--f~~ikg~le~ll~~lgi~ 526 (586)
|+|+|.+|.||+.+...-...++..+..+=+.|...- -.++-.++..+++.+|++
T Consensus 99 P~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~~~~ad~E~i~~~~~~l~~lgl~ 155 (434)
T 1wu7_A 99 PLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDRLGLQ 155 (434)
T ss_dssp SEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTTT
T ss_pred CeEEEEEcCeecCCCCCCCCccceEEeeEEEEcCCChHhhHHHHHHHHHHHHHcCCC
Confidence 8999999999976533323346666666544454321 134557778889999986
No 25
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=97.24 E-value=0.0024 Score=67.75 Aligned_cols=129 Identities=12% Similarity=0.129 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCC-CCC
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH-PKP 472 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~-~~~ 472 (586)
.+++++.+|+.+...||+|+.|..|-..+. +..... ...++.+ +..+ +.+.-+||+-+.|++.+.++.|.+. ..|
T Consensus 27 ~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el-~~~~g~-~~~~~my~f~D~-~g~~l~LRpd~T~~~aR~~~~~~~~~~~P 103 (400)
T 3od1_A 27 KKNICDQMTEEINLWGYDMIETPTLEYYET-VGVVSA-ILDQQLFKLLDQ-QGNTLVLRPDMTAPIARLVASSLKDRAYP 103 (400)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEETTT-HHHHSS-SCGGGSCEEECT-TSCEEEECSCSHHHHHHHHHHHCSSSCSC
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccccHHH-HhhcCC-ccccceEEEECC-CCCEEEECCCCHHHHHHHHHhhcccCCCC
Confidence 456889999999999999999999976653 332221 1123455 6655 3445589999999999999988764 568
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCH--HHHHHHHHHHHHHhCCC
Q 007872 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGF--ELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f--~~ikg~le~ll~~lgi~ 526 (586)
+|+|++|.||+.+.......++..++.+=+.|...-. .++-.++..+++.+|++
T Consensus 104 ~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~lgl~ 159 (400)
T 3od1_A 104 LRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDGTASADGEVIALMIAALKRAGLS 159 (400)
T ss_dssp EEEEEEEEEECCCC---CCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred eEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCCChHhHHHHHHHHHHHHHHCCCC
Confidence 9999999999865433334567777777556653322 25667888889999985
No 26
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=97.22 E-value=0.0025 Score=67.00 Aligned_cols=130 Identities=11% Similarity=0.044 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCC-CCce-eeCCccCCchhhcccchHHHHHHHHhccC-CC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDE-STAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD-HP 470 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~-~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~-~~ 470 (586)
..+++++.+|+.+...||+|+.|..|-..+. +..... ... ++.+ +..+ +.+.-+||+-+.|++.+.++.|.+ +.
T Consensus 39 ~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el-~~~~g~-~~~~~~my~~~D~-~g~~l~LRpd~T~~~aR~~~~~~~~~~ 115 (373)
T 3rac_A 39 RRRAVETRLLSFVEDAGYEPVTSGLFEYVDT-LLRARS-PESSRDWIRLFDG-GGDAVALRPEMTPSIARMAAPRVAAGR 115 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEEHHH-HHTTSC-TTSCCCCCBCCCC-SSSCEEECSSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCeEEECCceeeHHH-HhhcCC-ccchhceEEEECC-CCCEEEECCcCHHHHHHHHHhccccCC
Confidence 3456889999999999999999999987664 332221 112 3445 6555 445568999999999999998865 45
Q ss_pred CCeeEEEeCcEeecCCC------cccccccccEEEEEEcCCC-CCH--HHHHHHHHHHHHHhCCC
Q 007872 471 KPIKIYEVGDVVLLDEK------KDVGASCRRRLAALYCGAN-SGF--ELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 471 ~~~~lFEiG~V~~~~~~------~~~g~~~~~~l~~~~~~~~-~~f--~~ikg~le~ll~~lgi~ 526 (586)
.|+|+|++|.||+.+.. .....++..++.+=+.|.. .-. .++-.++..+++.+|++
T Consensus 116 ~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~~lgl~ 180 (373)
T 3rac_A 116 TPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASAAAGVR 180 (373)
T ss_dssp CCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 78999999999986543 2233466677777566654 222 25667888889999985
No 27
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=97.18 E-value=0.0039 Score=66.37 Aligned_cols=130 Identities=9% Similarity=0.065 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHc-CCC--CCCCCce-eeCCccCCchhhcccchHHHHHHHHhcc-C
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTML-NRQ--TDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNK-D 468 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l-~~~--~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~-~ 468 (586)
..+++++.+|+.+...||+|+.|..|...+. +..- +.. ...++.. +... +.+.=+||+-+.|++....+.|. .
T Consensus 19 ~~~~i~~~i~~~~~~~G~~ei~tP~le~~el-~~~~~G~~~d~~~~em~~~~D~-~g~~l~Lrpd~t~~~ar~~~~~~~~ 96 (421)
T 1h4v_B 19 MHQRIVATARKVLEAAGALELVTPIFEETQV-FEKGVGAATDIVRKEMFTFQDR-GGRSLTLRPEGTAAMVRAYLEHGMK 96 (421)
T ss_pred HHHHHHHHHHHHHHHcCCEEecccccccHHH-hhhccCCcccccccceEEEECC-CCCEEeeCCcchHHHHHHHHhcccc
Confidence 4567899999999999999999999988664 3221 210 0012445 6554 44556899999999999998773 3
Q ss_pred -CCCCeeEEEeCcEeecCCCcccccccccEEEEEEcCC---CCCHHHHHHHHHHHHHHhCCC
Q 007872 469 -HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGA---NSGFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 469 -~~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~---~~~f~~ikg~le~ll~~lgi~ 526 (586)
+..|+|+|++|.||+.+...-...++..+..+=+.|. .++ .++..++..+++.+|++
T Consensus 97 ~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~~~ad-~e~i~~~~~~l~~lgl~ 157 (421)
T 1h4v_B 97 VWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILD-AEAVVLLYECLKELGLR 157 (421)
T ss_pred ccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCCChhhh-HHHHHHHHHHHHHcCCC
Confidence 3579999999999976533222335666666533332 233 35667888899999986
No 28
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=97.06 E-value=0.0054 Score=66.43 Aligned_cols=132 Identities=11% Similarity=0.113 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCC--CCCce-eeCCccCCchhhcccchHHHHHHHHhccC-CC
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD--ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD-HP 470 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~--~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~-~~ 470 (586)
.+.+.+.+|+.+...||+|+.|..|...+......+...+ .++.. +...-+.+.-+||+.+.|++....+.|.. ..
T Consensus 49 ~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~t~~~ar~~~~~~~~~~ 128 (467)
T 4e51_A 49 WEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEHNMLYD 128 (467)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCSHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCcccHHHHHHHHHHcccccC
Confidence 4568899999999999999999999877643222122101 12344 65533245568999999999999988754 34
Q ss_pred CCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCH--HHHHHHHHHHHHHhCCC
Q 007872 471 KPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGF--ELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f--~~ikg~le~ll~~lgi~ 526 (586)
.|+|+|++|.||+.+.......++..+..+=+.|...-. .++-.++..+++.||++
T Consensus 129 lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~~lGl~ 186 (467)
T 4e51_A 129 GPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWEDLGLT 186 (467)
T ss_dssp SCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHHHHTCC
T ss_pred CCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCCChHHHHHHHHHHHHHHHHcCCC
Confidence 689999999999865443333466666665444543333 45678888999999995
No 29
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=96.99 E-value=0.0033 Score=67.90 Aligned_cols=128 Identities=13% Similarity=0.068 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHH-cCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCC-CC
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTM-LNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDH-PK 471 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~-l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~-~~ 471 (586)
.+.+.+.+|+.+...||+|+.|..|-..+. +.. .+.. -.++.. +... +.+.-.||+-+.|++...++.|.+. ..
T Consensus 46 ~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el-~~~~~G~~-~~~~my~f~D~-~g~~l~LRpd~T~~~aR~~~~~~~~~~~ 122 (456)
T 3lc0_A 46 RRHLFDVFHATAKTFGFEEYDAPVLESEEL-YIRKAGEE-ITEQMFNFITK-GGHRVALRPEMTPSLARLLLGKGRSLLL 122 (456)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGG-GCCCSCCH-HHHTCEEEECS-SSCEEEECSCSHHHHHHHHHHSCTTCCS
T ss_pred HHHHHHHHHHHHHHCCCEEEECCcEeehhh-hccccccc-hhhceEEEEcC-CCCEEecCCcCHHHHHHHHHhcCcccCC
Confidence 456889999999999999999998876653 211 0100 012345 6554 4455689999999999999998653 46
Q ss_pred CeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHH--HHHHHHHHHHHHhCC
Q 007872 472 PIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFE--LIHCLVDRIMEVIGT 525 (586)
Q Consensus 472 ~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~--~ikg~le~ll~~lgi 525 (586)
|+|+|++|.||+.+.......++..++.+=+.|...-.. ++-.++..+++.+|+
T Consensus 123 P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~lgl 178 (456)
T 3lc0_A 123 PAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGL 178 (456)
T ss_dssp SEEEEECCEEECCCC-----CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeccEEecCCCCCCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHHcCC
Confidence 899999999998654333345677777776666543333 466788888999998
No 30
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=96.96 E-value=0.0021 Score=68.44 Aligned_cols=131 Identities=13% Similarity=0.110 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHc--CCC-CCCCCce-eeCCccCCchhhcccchHHHHHHHHhccC-
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTML--NRQ-TDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD- 468 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l--~~~-~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~- 468 (586)
..+++.+.+|+.+...||+|+.|..|...+. +..- ... ...++.. +... +.+.-+||+.+.|++....+.+..
T Consensus 18 ~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l-~~~~~g~~~~~~~~~m~~~~D~-~g~~~~Lrp~~t~~~~r~~~~~~~~ 95 (420)
T 1qe0_A 18 KWRYIENQLDELMTFYNYKEIRTPIFESTDL-FARGVGDSTDVVQKEMYTFKDK-GDRSITLRPEGTAAVVRSYIEHKMQ 95 (420)
T ss_dssp HHHHHHHHHHHHHHHHTCEECBCCSEEEHHH-HCC-----------CCEEECHH-HHCCEEECSCSHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHcCCEEccCcccchHHH-hhhccCCccchhhhheEEEEcC-CCCEEEeCCCChHHHHHHHHhcccc
Confidence 3567889999999999999999999988763 2211 000 0012344 5433 233458999999999999987654
Q ss_pred --CCCCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCH--HHHHHHHHHHHHHhCCC
Q 007872 469 --HPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGF--ELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 469 --~~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f--~~ikg~le~ll~~lgi~ 526 (586)
+..|+|+|.+|.||+.+.......++..+..+=+.|..... .++-.++..++..||++
T Consensus 96 ~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~~lgl~ 157 (420)
T 1qe0_A 96 GNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLK 157 (420)
T ss_dssp GCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCCCchhHHHHHHHHHHHHHHcCCC
Confidence 35799999999999865332223456666665455543322 45667888899999986
No 31
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=96.89 E-value=0.0056 Score=65.23 Aligned_cols=131 Identities=11% Similarity=0.107 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCC--CCCce-eeCCccCCchhhcccchHHHHHHHHhccC-C
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD--ESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD-H 469 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~--~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~-~ 469 (586)
..+++++.+|+.+...||+|+.|..|...+......+..-+ .++.. +... +.+.=+||+-+.|++.+..+.|.. +
T Consensus 20 ~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~-~g~~l~Lrpd~t~~~aR~~~~~~~~~ 98 (423)
T 1htt_A 20 IWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDR-NGDSLTLRPEGTAGCVRAGIEHGLLY 98 (423)
T ss_dssp HHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECT-TSCEEEECSCSHHHHHHHHHHHTCST
T ss_pred HHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcC-CCCEEEeCCCchHHHHHHHHhccccc
Confidence 35578899999999999999999999887642222122100 12445 6655 445568999999999999987653 4
Q ss_pred CCCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCC--HHHHHHHHHHHHHHhCC
Q 007872 470 PKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSG--FELIHCLVDRIMEVIGT 525 (586)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~--f~~ikg~le~ll~~lgi 525 (586)
..|+|+|++|.||+.+...-...++..+..+=+.|.... -.++..++..+++.+|+
T Consensus 99 ~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~~~~ad~e~i~~~~~~l~~lgl 156 (423)
T 1htt_A 99 NQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGI 156 (423)
T ss_dssp TCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCCCchhhHHHHHHHHHHHHHCCC
Confidence 579999999999976543322346666666644443221 22455788889999998
No 32
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=96.49 E-value=0.018 Score=61.95 Aligned_cols=128 Identities=12% Similarity=-0.009 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCCe
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~ 473 (586)
.+++++.+|+.+...||+|+.|..|-..+. +..- ...+.+... +... +.+.=+||+-+.+++.+.++.|. ..|+
T Consensus 31 ~~~i~~~~~~~~~~~Gy~eI~tP~le~~el-~~~~-~g~~~~~~y~f~D~-~g~~l~LRPd~T~~~aR~~~~~~--~~p~ 105 (464)
T 4g84_A 31 REKVFDVIIRCFKRHGAEVIDTPVFELKET-LMGK-YGEDSKLIYDLKDQ-GGELLSLRYDLTVPFARYLAMNK--LTNI 105 (464)
T ss_dssp HHHHHHHHHHHHHHTTCEECBCCSEEEHHH-HTTS-CC----CCCBBCCC-SSCCEEECSCSHHHHHHHHHHTT--CSCE
T ss_pred HHHHHHHHHHHHHHCCCeEEECcccCcHHH-hccc-cCcCcceeEEEECC-CCCEEEeCCcCcHHHHHHHHhcC--CCCc
Confidence 457889999999999999999999976553 2211 111112334 6555 55556799999999999998874 4589
Q ss_pred eEEEeCcEeecCCCcc--cccccccEEEEEEcCCCCC-H--HHHHHHHHHHHHHhCCCC
Q 007872 474 KIYEVGDVVLLDEKKD--VGASCRRRLAALYCGANSG-F--ELIHCLVDRIMEVIGTPF 527 (586)
Q Consensus 474 ~lFEiG~V~~~~~~~~--~g~~~~~~l~~~~~~~~~~-f--~~ikg~le~ll~~lgi~~ 527 (586)
|+|.+|.||+.+.... ...++..++++=+.|.... . .++-.++..+++.+|+..
T Consensus 106 k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl~~ 164 (464)
T 4g84_A 106 KRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGD 164 (464)
T ss_dssp EEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHHHTCCC
T ss_pred eeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHHhCCCC
Confidence 9999999997653211 1235666776645553221 2 234467778889999863
No 33
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=96.37 E-value=0.019 Score=62.79 Aligned_cols=129 Identities=12% Similarity=0.012 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP 472 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~ 472 (586)
..+++++.+|+.+...||+|+.|..|-..+......+ .+.+... +... +.+.=+||+-+.+++.+.++.|. ..|
T Consensus 83 ~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~g--e~~~~my~f~D~-~g~~l~LRPd~T~~~aR~~~~~~--~~p 157 (517)
T 4g85_A 83 VREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYG--EDSKLIYDLKDQ-GGELLSLRYDLTVPFARYLAMNK--LTN 157 (517)
T ss_dssp HHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC--------CSCBBCCT-TSCCEEECSCSHHHHHHHHHHTT--CSC
T ss_pred HHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccC--cCcceeEEEECC-CCCEEEeCCcCcHHHHHHHHhCC--CCC
Confidence 3457889999999999999999999976653211111 1112233 5554 44556799999999999998874 358
Q ss_pred eeEEEeCcEeecCCCcc--cccccccEEEEEEcCCCC-CHH--HHHHHHHHHHHHhCCCC
Q 007872 473 IKIYEVGDVVLLDEKKD--VGASCRRRLAALYCGANS-GFE--LIHCLVDRIMEVIGTPF 527 (586)
Q Consensus 473 ~~lFEiG~V~~~~~~~~--~g~~~~~~l~~~~~~~~~-~f~--~ikg~le~ll~~lgi~~ 527 (586)
+|+|++|.||+.+.... ...|+..++++=+.|... -.. ++-.++..+++.+|+..
T Consensus 158 ~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl~~ 217 (517)
T 4g85_A 158 IKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGD 217 (517)
T ss_dssp EEEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHHHCCCC
T ss_pred ceeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHhhcCCc
Confidence 99999999998653311 124666777765555422 222 45567778889999863
No 34
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=96.28 E-value=0.01 Score=63.95 Aligned_cols=130 Identities=12% Similarity=0.115 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCC-CCCCCce-eeCCccCCchhhcc---cchHHHHHHHHhccC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQ-TDESTAV-VGNPRTSDFEVVRT---TLMPGILKTIGHNKD 468 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~-~~~~~~v-l~NP~s~e~~~lR~---sLlpgLL~~l~~N~~ 468 (586)
..+++.+.+|+.+...||+|+.|..|...+. +..-+.. ...++.+ +...- .+.-+||+ -+++++.+....+.
T Consensus 69 ~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el-~~~sg~~d~~~~em~~~~d~~-~~~~~LrPt~ee~t~~i~r~~~~s~- 145 (458)
T 2i4l_A 69 VLKKIEQIVREEQNRAGAIELLMPTLQLADL-WRESGRYDAYGPEMLRIADRH-KRELLYGPTNEEMITEIFRAYIKSY- 145 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCEECBCCSEEEHHH-HHHHTHHHHSCTTSEEEECTT-CCEEEECSCCHHHHHHHHHHHCCBG-
T ss_pred HHHHHHHHHHHHHHHcCCEEEEcCccCcHHH-HHhcCCccccccceEEEEeCC-CCeEEECCCChHHHHHHHHHHHhhc-
Confidence 4567889999999999999999999998764 3222210 0113445 65432 23447999 47777777766644
Q ss_pred CCCCeeEEEeCcEeecCCCcccc---cccccEEEEEEcCCC-----CCHHHHHHHHHHHHHHhCCC
Q 007872 469 HPKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGAN-----SGFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~~~~~g---~~~~~~l~~~~~~~~-----~~f~~ikg~le~ll~~lgi~ 526 (586)
+..|+|+|++|.||+.+.....| .++..+..+-+.+.. ..+..+..+...++..||++
T Consensus 146 ~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~~~~~~~i~~~lGl~ 211 (458)
T 2i4l_A 146 KSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARMGLK 211 (458)
T ss_dssp GGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 35799999999999765221122 355566555444421 23444567788899999987
No 35
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=96.26 E-value=0.0099 Score=66.98 Aligned_cols=131 Identities=13% Similarity=0.100 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCC-CCCCCce-eeCCccC-CchhhcccchHHHHHHHHhccC--
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQ-TDESTAV-VGNPRTS-DFEVVRTTLMPGILKTIGHNKD-- 468 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~-~~~~~~v-l~NP~s~-e~~~lR~sLlpgLL~~l~~N~~-- 468 (586)
..+++.+.+|+.+...||+|+.|..|.+.+..... +.. .-.++.. +.. ... +.-+|||..-|++....+.+.+
T Consensus 273 ~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~s-G~~d~~~~~mf~~~d-~~~~~~~~LrP~~~~~~~~~~~~~~~sy 350 (645)
T 1nyr_A 273 IRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTS-GHWDHYQEDMFPPMQ-LDETESMVLRPMNCPHHMMIYANKPHSY 350 (645)
T ss_dssp HHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHH-THHHHCTTSSCCCEE-ETTTEEEEECSSSHHHHHHHHHTSCCBG
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhC-CCccccccCcceeEe-cCCCeEEEeCCCCCHHHHHHHHhhhhhc
Confidence 45678899999999999999999999988742221 110 0012333 322 112 3347999999999999998865
Q ss_pred CCCCeeEEEeCcEeecCCCcc-cc---cccccEEEEEEcCCCC----CHHHHHHHHHHHHHHhCCC
Q 007872 469 HPKPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAALYCGANS----GFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~~~~-~g---~~~~~~l~~~~~~~~~----~f~~ikg~le~ll~~lgi~ 526 (586)
+..|+|+|++|.||+.+.+.. .| .++..+..+=+-+... .|.++..++..++..||++
T Consensus 351 r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~~d~~~e~i~~~~~~l~~lGl~ 416 (645)
T 1nyr_A 351 RELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFE 416 (645)
T ss_dssp GGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 357999999999998655422 22 3555555543333322 3567788899999999995
No 36
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=96.12 E-value=0.082 Score=53.53 Aligned_cols=117 Identities=15% Similarity=0.043 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCC--CCCCCce-eeCCccCCchhhcccchHHHH-HHHHhccCCC
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQ--TDESTAV-VGNPRTSDFEVVRTTLMPGIL-KTIGHNKDHP 470 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~--~~~~~~v-l~NP~s~e~~~lR~sLlpgLL-~~l~~N~~~~ 470 (586)
..++.+.+|+.|...||.|+-|..|.+..+ .+..+ .++.+.. +. -......||+|- .+. +.+.. +
T Consensus 18 rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~---~~~~~~~~e~a~~f~~~--~~~~~~~L~~Sp--e~~~~~l~~----~ 86 (294)
T 1nnh_A 18 QTKILEYMTDFFVKEGFKWLLPVIISPITD---PLWPDPAGEGMEPAEVE--IYGVKMRLTHSM--ILHKQLAIA----M 86 (294)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCCEESCCC---CCCSCTTCCCCCCCEEE--ETTEEEEECSCS--HHHHHHHHH----T
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEEEccc---hhccCCCCCcceeEEEE--cCCCCEEeccCh--HHHHHHHhh----c
Confidence 346788999999999999999999998721 11111 0111122 21 111224566543 332 22221 2
Q ss_pred CCeeEEEeCcEeecCC--Cc-ccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHhC
Q 007872 471 KPIKIYEVGDVVLLDE--KK-DVGASCRRRLAALYCGANSGFELIHCLVDRIMEVIG 524 (586)
Q Consensus 471 ~~~~lFEiG~V~~~~~--~~-~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~lg 524 (586)
.+.|+|+||+||+.+. .. .++..+.+++.+-+++. ++.++.++++.++..+.
T Consensus 87 g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~--~~~~l~~~~e~l~~~l~ 141 (294)
T 1nnh_A 87 GLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERA--KMEDIMRLIERLVYGLF 141 (294)
T ss_dssp TCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETC--CHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEccEeCCCCCCCCCccccceeEEEEEecCC--CHHHHHHHHHHHHHHHH
Confidence 2589999999998776 32 23434677888777775 69999999999887664
No 37
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=96.10 E-value=0.022 Score=61.67 Aligned_cols=158 Identities=13% Similarity=0.044 Sum_probs=101.4
Q ss_pred CCCC-cccCCcchhHhHHHHhhCcCCCCCCCCCCCCCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCC
Q 007872 357 PPTR-SDVLHPCDVMEDVAIAYGYNNIPKRKPASVKPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDE 435 (586)
Q Consensus 357 P~~R-~DI~~~~DliEEIar~yGydni~~~~p~~~~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~ 435 (586)
..+| .++-...|++ ..-|+--+ +|. .....+.+.+.+|+.+...||+|+.|..|...+..........-.
T Consensus 22 ~~h~~~~lg~~~~~~----~~~G~~d~---lP~--g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~ 92 (471)
T 3a32_A 22 PDSRVPVFNREFATF----TGAGVPLF---SLG--GGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYR 92 (471)
T ss_dssp TTSBCTTTCSBTHHH----HCTTCCCB---CTT--HHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGG
T ss_pred CCchhHHHHHhcCCc----cCCEEEEE---Cch--HHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccc
Confidence 4455 3666677766 22333222 111 233456788999999999999999999999887532222111111
Q ss_pred CCce-eeCCccCCchhhcccchHHHHHHHHhccC--C---CCCeeEEEeCcEeecCCCcc-cc---cccccEEEEEEcCC
Q 007872 436 STAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--H---PKPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAALYCGA 505 (586)
Q Consensus 436 ~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~--~---~~~~~lFEiG~V~~~~~~~~-~g---~~~~~~l~~~~~~~ 505 (586)
++.. + -...+.-+|||...|++....+.+.+ + ..|+|+|++|.||+.+.... .| .++..+..+=+.+.
T Consensus 93 ~emy~~--d~~~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~ 170 (471)
T 3a32_A 93 NNMYLF--DIEGHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVP 170 (471)
T ss_dssp GGSEEE--EETTEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEE
T ss_pred cceEEE--ecCCcEEEEccccHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcC
Confidence 3344 5 22344568999999999999988843 3 67999999999998654431 33 35555544433232
Q ss_pred CC----CHHHHHHHHHHHHHH-hCC
Q 007872 506 NS----GFELIHCLVDRIMEV-IGT 525 (586)
Q Consensus 506 ~~----~f~~ikg~le~ll~~-lgi 525 (586)
.. .|.++..+...++.. ||+
T Consensus 171 ~~~~~de~~e~i~~~~~~l~~~lGl 195 (471)
T 3a32_A 171 GGRVIDVVYDVFEEMKLVLERLFKL 195 (471)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 22 245678888899999 999
No 38
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=95.84 E-value=0.024 Score=62.77 Aligned_cols=131 Identities=15% Similarity=0.124 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCC-CCCCCce-eeCCccCCchhhcccchHHHHHHHHhccC--C
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQ-TDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--H 469 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~-~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~--~ 469 (586)
-.+++.+.+|+.+...||+|+.|..|.+.+. +..-+.. .-.++.. +.. ...+.-+|||..-|++....+.+.+ +
T Consensus 49 ~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l-~~~sG~~~~~~~~m~~~~d-~~~~~~~LrP~~~~~~~~~~~~~~~s~~ 126 (572)
T 2j3l_A 49 VLEKLKTIMREEFEKIDAVEMLMPALLPAEL-WKESGRYETYGPNLYRLKD-RNDRDYILGPTHEETFTELIRDEINSYK 126 (572)
T ss_dssp HHHHHHHHHHHHHHTTTCEECBCCSEEETHH-HHHHSHHHHSCTTSCEEEC-TTCCEEEECSCCHHHHHHHHHHHCCBGG
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCccccHHH-HHhcCCccccchheEEEec-CCCCeEEEccccHHHHHHHHHhhccChh
Confidence 3567889999999999999999999998874 3322210 0013344 543 2334558999999999998888765 3
Q ss_pred CCCeeEEEeCcEeecCCCcccc---cccccEEEEEEcCCC-----CCHHHHHHHHHHHHHHhCCC
Q 007872 470 PKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGAN-----SGFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~~~g---~~~~~~l~~~~~~~~-----~~f~~ikg~le~ll~~lgi~ 526 (586)
..|+|+|++|.+|+.+.....| .++..+..+-+.+.. ..+..+..+...++..||++
T Consensus 127 ~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~~~~~~~~~~~lgl~ 191 (572)
T 2j3l_A 127 RLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERCGLE 191 (572)
T ss_dssp GCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 5799999999999865431122 255555554333331 12344566888899999997
No 39
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=95.81 E-value=0.078 Score=56.54 Aligned_cols=128 Identities=10% Similarity=0.021 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccC--CCC
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HPK 471 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~--~~~ 471 (586)
.+.+.+.+++.+...||+|+.+..|.+.+........+...++.. +.+ +.-+||++--|++....+.+.. +..
T Consensus 175 ~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~~----~~l~LrPt~e~~i~~~~~~~i~s~~~L 250 (425)
T 2dq3_A 175 ERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCER----DNLYLIPTAEVPLTNLYREEILKEENL 250 (425)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCTT----TCCEECSSTHHHHHGGGTTEEEETTTC
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEecC----CeEEEcCCCcHHHHHHHHhhccccccC
Confidence 456788899999999999999999999986444322221123344 542 3347999999999988887754 346
Q ss_pred CeeEEEeCcEeecCCCc----ccc---cccccEEEEEEcC-CC---CCHHHHHHHHHHHHHHhCCC
Q 007872 472 PIKIYEVGDVVLLDEKK----DVG---ASCRRRLAALYCG-AN---SGFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 472 ~~~lFEiG~V~~~~~~~----~~g---~~~~~~l~~~~~~-~~---~~f~~ikg~le~ll~~lgi~ 526 (586)
|+|++++|.||+.+.+. ..| .++..+.-+...+ .. ..+.++......++..||++
T Consensus 251 Plrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL~ 316 (425)
T 2dq3_A 251 PIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLP 316 (425)
T ss_dssp CEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 99999999999866532 112 2444444443322 22 12678889999999999998
No 40
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii}
Probab=95.81 E-value=0.018 Score=59.81 Aligned_cols=66 Identities=18% Similarity=0.149 Sum_probs=58.9
Q ss_pred eEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhhHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHHH
Q 007872 3 TVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIA 82 (586)
Q Consensus 3 ~i~~~~~~l~~~~g~~~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiA 82 (586)
+|.++.+++.+++|.+++.+++.++|..+|++++.. ++ .+.|.+|+-|+|++.-.=|+
T Consensus 282 ~i~~~~~~i~~~lG~~l~~~~i~~iL~~lg~~~~~~-~~---------------------~~~V~vP~~R~DI~~~~Dli 339 (348)
T 2cxi_A 282 EFEVELDYIRKLSGLELNDGEIKELLEKMMYEVEIS-RG---------------------RAKLKYPAFRDDIMHARDIL 339 (348)
T ss_dssp EEEEEHHHHHHHHTCCCCHHHHHHHHHHTTCEEEEE-TT---------------------EEEEEECTTCCCCCSHHHHH
T ss_pred EEEecHHHHHHHhCCCCCHHHHHHHHHHcCCeEEeC-CC---------------------eEEEECCCCcccCCcccHHH
Confidence 789999999999999999999999999999999521 11 48999999999999999999
Q ss_pred HHHHHHcC
Q 007872 83 QALRVFNK 90 (586)
Q Consensus 83 Rel~a~~g 90 (586)
-|++-++|
T Consensus 340 EEVaR~yG 347 (348)
T 2cxi_A 340 EDVLIAYG 347 (348)
T ss_dssp HHHHHHHT
T ss_pred HHhHHhcC
Confidence 99988776
No 41
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=95.69 E-value=0.022 Score=60.25 Aligned_cols=152 Identities=11% Similarity=0.079 Sum_probs=94.7
Q ss_pred HHHHhhCcCCCCCCCCCCC-----CCChHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCC-CCCce-eeCCc
Q 007872 372 DVAIAYGYNNIPKRKPASV-----KPLALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPR 444 (586)
Q Consensus 372 EIar~yGydni~~~~p~~~-----~~~~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~-~~~~v-l~NP~ 444 (586)
++++-.|+=-|....+.+. ...-.+++.+.+|+.+...||+|+.|..|.+.+. +..-+.... .++.. +. .
T Consensus 5 ~l~~~~~l~~~~~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l-~~~sG~~~~~~~em~~~d--~ 81 (401)
T 1evl_A 5 KIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVL-WEKTGHWDNYKDAMFTTS--S 81 (401)
T ss_dssp HHHHHTTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHH-HHHHTHHHHSGGGCCEEE--E
T ss_pred HHHHhCCceEecCCCCcceEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHH-HHhcCcHhhhchhhEeEe--c
Confidence 4455555544444333332 2223557888999999999999999999999874 322111000 01111 11 1
Q ss_pred cCCchhhcccchHHHHHHHHhccC--CCCCeeEEEeCcEeecCCCc-ccc---cccccEEEEEEcCCC--C--CHHHHHH
Q 007872 445 TSDFEVVRTTLMPGILKTIGHNKD--HPKPIKIYEVGDVVLLDEKK-DVG---ASCRRRLAALYCGAN--S--GFELIHC 514 (586)
Q Consensus 445 s~e~~~lR~sLlpgLL~~l~~N~~--~~~~~~lFEiG~V~~~~~~~-~~g---~~~~~~l~~~~~~~~--~--~f~~ikg 514 (586)
..+.-+||++.-+++....+.+.+ +..|+|+|++|.+|+.+... ..| .++..+..+-+-+.. + .|.++..
T Consensus 82 ~~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~~~~~~~e~~e~i~ 161 (401)
T 1evl_A 82 ENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIR 161 (401)
T ss_dssp TTEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHH
T ss_pred CCceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeCCHHHHHHHHHHHHH
Confidence 223458999999999999987754 24699999999999865431 122 345444444322221 1 2446788
Q ss_pred HHHHHHHHhCCC
Q 007872 515 LVDRIMEVIGTP 526 (586)
Q Consensus 515 ~le~ll~~lgi~ 526 (586)
+...++..||++
T Consensus 162 ~~~~~~~~lgl~ 173 (401)
T 1evl_A 162 LVYDMYSTFGFE 173 (401)
T ss_dssp HHHHHHHTTTCS
T ss_pred HHHHHHHHcCCC
Confidence 889999999994
No 42
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=95.68 E-value=0.1 Score=56.15 Aligned_cols=134 Identities=14% Similarity=0.110 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCC-CCCce-eeCCc---cCCchhhcccchHHHHHHHHhccC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAV-VGNPR---TSDFEVVRTTLMPGILKTIGHNKD 468 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~-~~~~v-l~NP~---s~e~~~lR~sLlpgLL~~l~~N~~ 468 (586)
..+.+.+.+|+.+...||+|+.+..|.+.+......+.... .++.. +..-- ..+.-+|||..-+++....+.+.+
T Consensus 40 l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~~~~ 119 (459)
T 1nj8_A 40 IRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVK 119 (459)
T ss_dssp HHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHHHHhhh
Confidence 34568899999999999999999999997743221221110 12333 43211 134468999999999999988754
Q ss_pred --CCCCeeEEEeCcEeecCCCcccc---ccccc-EEEEEEcCCC-----CCHHHHHHHHHHHHHHhCCCC
Q 007872 469 --HPKPIKIYEVGDVVLLDEKKDVG---ASCRR-RLAALYCGAN-----SGFELIHCLVDRIMEVIGTPF 527 (586)
Q Consensus 469 --~~~~~~lFEiG~V~~~~~~~~~g---~~~~~-~l~~~~~~~~-----~~f~~ikg~le~ll~~lgi~~ 527 (586)
+..|+|+|++|.||+.+.....| .++.. +..+-+.+.. ..+.++..+...++..||+++
T Consensus 120 s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~~~~~~~~~LGl~~ 189 (459)
T 1nj8_A 120 VHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLGIPY 189 (459)
T ss_dssp BTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred hcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCce
Confidence 35799999999999765441222 34555 4443222321 224457788889999999983
No 43
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=95.49 E-value=0.056 Score=57.55 Aligned_cols=129 Identities=9% Similarity=-0.028 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccC--CC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HP 470 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~--~~ 470 (586)
-.+.+.+.+++.+...||+|+.+..|.+.+........+.-.++.. +.+ +--+||++--+++....+.+.. +.
T Consensus 168 l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d----~~l~L~Pt~e~~~~~~~~~~~~s~~~ 243 (421)
T 1ses_A 168 YELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE----TDLYLTGTAEVVLNALHSGEILPYEA 243 (421)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBTT----SSEEECSSTHHHHHHTTTTCEEEGGG
T ss_pred HHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEEcC----CeEEEeecCcHHHHHHhcccccCchh
Confidence 3456788889999999999999999999986544422222123444 643 3347999999999888777643 34
Q ss_pred CCeeEEEeCcEeecCCCc----ccc---cccccEEEEEE-cCC---C--CCHHHHHHHHHHHHHHhCCC
Q 007872 471 KPIKIYEVGDVVLLDEKK----DVG---ASCRRRLAALY-CGA---N--SGFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~----~~g---~~~~~~l~~~~-~~~---~--~~f~~ikg~le~ll~~lgi~ 526 (586)
.|++++++|.+|+.+..+ ..| .++..+.-+.. +.. . ..|.++....+.++..||++
T Consensus 244 LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~LGL~ 312 (421)
T 1ses_A 244 LPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELP 312 (421)
T ss_dssp CSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 799999999999866421 122 24444443332 333 1 23668889999999999998
No 44
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=95.31 E-value=0.13 Score=55.28 Aligned_cols=128 Identities=11% Similarity=0.032 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccC--CCC
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HPK 471 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~--~~~ 471 (586)
.+.+.+.+++.+...||+|+.+..|.+.+........+.-.++.. +.+ +--+||++--+++....+.+.. +..
T Consensus 196 ~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d----~~l~LrPt~e~~~~~~~~~~~~s~~~L 271 (455)
T 2dq0_A 196 DLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVED----EDLYLIPTAEHPLAGMHANEILDGKDL 271 (455)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBTT----SSCEECSSTHHHHHHTTTTEEEETTTC
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeecC----CcEEEcCcCcHHHHHHHHhCccCchhC
Confidence 456788889999999999999999999886433311111012333 542 3347999999999988887754 457
Q ss_pred CeeEEEeCcEeecCCCcc----cc---cccccEEEEE-EcCCC---CCHHHHHHHHHHHHHHhCCC
Q 007872 472 PIKIYEVGDVVLLDEKKD----VG---ASCRRRLAAL-YCGAN---SGFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 472 ~~~lFEiG~V~~~~~~~~----~g---~~~~~~l~~~-~~~~~---~~f~~ikg~le~ll~~lgi~ 526 (586)
|++++++|.+|+.+.... .| .++..+.-+. ++... ..|.++....+.++..||++
T Consensus 272 Plr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe~s~~~~~e~l~~~~~il~~LGL~ 337 (455)
T 2dq0_A 272 PLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIP 337 (455)
T ss_dssp SEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999999999998654321 12 2333333332 23332 13667888999999999998
No 45
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=94.94 E-value=0.13 Score=55.30 Aligned_cols=133 Identities=14% Similarity=0.163 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHH-HHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCc-cCCchhhcccchHHHHHHHHhccC--
Q 007872 394 ALNEFSDLMRLEI-AMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPR-TSDFEVVRTTLMPGILKTIGHNKD-- 468 (586)
Q Consensus 394 ~~~~~~~~lr~~l-~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~-s~e~~~lR~sLlpgLL~~l~~N~~-- 468 (586)
-.+.+.+.+|+.+ ...||+|+.|..|.+.+.....-....-.++.. +...- ..+.-+|||+--|++....+....
T Consensus 66 l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~~s~ 145 (460)
T 3uh0_A 66 IFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSY 145 (460)
T ss_dssp HHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTTSCCBG
T ss_pred HHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHhccccc
Confidence 3567888999999 899999999999999875333211111113334 54321 234457999999999988777654
Q ss_pred CCCCeeEEEeCcEeecCCCcc-cc---cccccEEEEE-EcCCC---CCHHHHHHHHHHHH-HHhCCC
Q 007872 469 HPKPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAAL-YCGAN---SGFELIHCLVDRIM-EVIGTP 526 (586)
Q Consensus 469 ~~~~~~lFEiG~V~~~~~~~~-~g---~~~~~~l~~~-~~~~~---~~f~~ikg~le~ll-~~lgi~ 526 (586)
+..|+|++++|.||+.+.... .| .++..+..+- ++... ..+.++..++..++ +.||++
T Consensus 146 r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~e~~~~e~~~~i~~~~~~~~~~lGl~ 212 (460)
T 3uh0_A 146 NELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFV 212 (460)
T ss_dssp GGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHTTTSCCC
T ss_pred cccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 346999999999998665431 23 2444443332 23322 12344667778888 888987
No 46
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=94.87 E-value=0.2 Score=54.17 Aligned_cols=132 Identities=11% Similarity=0.017 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCC-CCCCCce-eeCCcc---CCchhhcccchHHHHHHHHhccC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQ-TDESTAV-VGNPRT---SDFEVVRTTLMPGILKTIGHNKD 468 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~-~~~~~~v-l~NP~s---~e~~~lR~sLlpgLL~~l~~N~~ 468 (586)
..+.+.+.+|+.+...||+|+.+..|.+.+......+.. .-.++.. +..--. .+.-+|||..-+++....+.+.+
T Consensus 46 l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~~~~ 125 (477)
T 1hc7_A 46 IWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIR 125 (477)
T ss_dssp HHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHHhhhh
Confidence 345788999999999999999999999876421101110 0012333 432110 23458999999999999988855
Q ss_pred --CCCCeeEEEeCcEeecCCCcccc---cccccEEEEEEcCCC-----CCHHHHHHHHHHHH-HHhCCC
Q 007872 469 --HPKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCGAN-----SGFELIHCLVDRIM-EVIGTP 526 (586)
Q Consensus 469 --~~~~~~lFEiG~V~~~~~~~~~g---~~~~~~l~~~~~~~~-----~~f~~ikg~le~ll-~~lgi~ 526 (586)
+..|+++|++|.||+.+.. ..| .++..+..+=+.+.. ..+..+..+...++ +.||++
T Consensus 126 s~r~LP~rl~qig~vfR~E~~-~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~l~~~~~i~~~~Lgl~ 193 (477)
T 1hc7_A 126 SWRDLPQLLNQWGNVVRWEMR-TRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIP 193 (477)
T ss_dssp BGGGCCEEEEEEEEEECCCSS-CBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ccccCCeeeEeecCEEeCCCC-CCCcceeEEEEEccEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 3579999999999976533 223 244444433222321 12333455678889 799997
No 47
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=94.65 E-value=0.32 Score=53.32 Aligned_cols=128 Identities=9% Similarity=-0.015 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccC--CCC
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HPK 471 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~--~~~ 471 (586)
.+.+.+.+++.+...||+|+.+..+++.+........+...++.. +.+ +--+||++-=+++....+.... +..
T Consensus 278 ~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~~----~~~~L~PT~E~~~~~l~~~~i~s~~~L 353 (536)
T 3err_A 278 ELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE----TDLYLTGTAEVVLNALHSGEILPYEAL 353 (536)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEETT----TTEEECSSTHHHHHHHTTTCEEEGGGC
T ss_pred HHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEecC----CCEEEccCCcHHHHHHHhcccccHhhC
Confidence 456778889999999999999999999987555544333223445 654 3347889888886665544432 347
Q ss_pred CeeEEEeCcEeecCCCc----cccc---ccccEEEE-EEcCCC-----CCHHHHHHHHHHHHHHhCCC
Q 007872 472 PIKIYEVGDVVLLDEKK----DVGA---SCRRRLAA-LYCGAN-----SGFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 472 ~~~lFEiG~V~~~~~~~----~~g~---~~~~~l~~-~~~~~~-----~~f~~ikg~le~ll~~lgi~ 526 (586)
|+|++++|.+|+....+ ..|. ++..+.-+ .++... ..|..+....+.++..||++
T Consensus 354 Plr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~LgLp 421 (536)
T 3err_A 354 PLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELP 421 (536)
T ss_dssp SEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999999865421 1222 33333322 234333 23677888889999999998
No 48
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=94.50 E-value=0.049 Score=61.27 Aligned_cols=131 Identities=11% Similarity=0.126 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCC-CCCceeeCCccCCchhhcccchHHHHHHHHhccC--CC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTD-ESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKD--HP 470 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~-~~~~vl~NP~s~e~~~lR~sLlpgLL~~l~~N~~--~~ 470 (586)
-.+++.+.+|+.+...||+|+.|..|.+.+.. ..-+.... .++..- --...+.-+|||..-|++....+.+.+ +.
T Consensus 273 l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~-~~sGh~~~~~~~my~-~d~~~~~~~LrP~~~~~~~~~~~~~~~syr~ 350 (642)
T 1qf6_A 273 IFRELEVFVRSKLKEYQYQEVKGPFMMDRVLW-EKTGHWDNYKDAMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSYRD 350 (642)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEETHHH-HHHSHHHHHGGGCEE-EEETTEEEEECSSSHHHHHHHHTTSCEEGGG
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCcCccHHHH-hhcCcccccccccee-eecCCceEEecCCCCHHHHHHHHhhhhhccc
Confidence 35678899999999999999999999998743 22111000 012221 011123347999999999999988754 35
Q ss_pred CCeeEEEeCcEeecCCCcc-cc---cccccEEEEEE-cCCC---CCHHHHHHHHHHHHHHhCCC
Q 007872 471 KPIKIYEVGDVVLLDEKKD-VG---ASCRRRLAALY-CGAN---SGFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~~-~g---~~~~~~l~~~~-~~~~---~~f~~ikg~le~ll~~lgi~ 526 (586)
.|+|+|++|.||+.+.+.. .| .|+..+..+-+ +... ..|..+..+...++..||++
T Consensus 351 LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e~~~~i~~~~~i~~~lGl~ 414 (642)
T 1qf6_A 351 LPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFE 414 (642)
T ss_dssp CSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHGGGTCC
T ss_pred cCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 7999999999998665421 23 34444444322 2221 12445677888899999984
No 49
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=94.49 E-value=0.057 Score=60.06 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=61.4
Q ss_pred eEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhhHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHHH
Q 007872 3 TVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIA 82 (586)
Q Consensus 3 ~i~~~~~~l~~~~g~~~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiA 82 (586)
+|+++.+++.+++|.+++.+++.++|..+|++++...+ ++ .+.|.+|+-|+|+..-.=|+
T Consensus 306 ~i~l~~~~i~~llG~~i~~~~i~~iL~~Lgf~~~~~~~-------------------~~-~~~V~vPs~R~DI~~e~DLi 365 (589)
T 3l4g_B 306 KEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGD-------------------GN-QIEIEIPPTRADIIHACDIV 365 (589)
T ss_dssp EEEEEHHHHHHHHTCCCCHHHHHHHHHHTTCEEEECSS-------------------SS-EEEEEECSSCTTCCSHHHHH
T ss_pred EEEecHHHHHHhhCCCCCHHHHHHHHHHCCCeEEEcCC-------------------Cc-eEEEECCCCccccCCccHHH
Confidence 68999999999999999999999999999999863321 11 59999999999999999999
Q ss_pred HHHHHHcCCC
Q 007872 83 QALRVFNKQQ 92 (586)
Q Consensus 83 Rel~a~~g~~ 92 (586)
-|++-++|-.
T Consensus 366 EEVaRiyGYd 375 (589)
T 3l4g_B 366 EDAAIAYGYN 375 (589)
T ss_dssp HHHHHHHCGG
T ss_pred HHHHHHhCcc
Confidence 9999999853
No 50
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=94.40 E-value=0.34 Score=52.58 Aligned_cols=131 Identities=11% Similarity=0.031 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCC-Cce-eeCCccCCchhhcccchHHHHHHHHhccC--CC
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDES-TAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HP 470 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~-~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~--~~ 470 (586)
.+.+.+.+++.+...||+|+.+..|++.+........+...+ +.. +..- ..+--+||++-=+.+....+.... +.
T Consensus 222 ~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~-~~~~l~L~PTaE~~~~~l~~~~i~s~~~ 300 (501)
T 1wle_A 222 QHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPS-RFEDLNLAGTAEVGLAGYFMDHSVAFRD 300 (501)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTT-TSSSCEECSSHHHHHHHHHTTEEEEGGG
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecC-CCCeEEECCcCcHHHHHHHhhccCCccc
Confidence 456788889999999999999999999986554433332223 344 5321 112337999998888777766554 35
Q ss_pred CCeeEEEeCcEeecCCCc---cccc---ccccEEEE-EEcCCC-----CCHHHHHHHHHHHHHHhCCC
Q 007872 471 KPIKIYEVGDVVLLDEKK---DVGA---SCRRRLAA-LYCGAN-----SGFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 471 ~~~~lFEiG~V~~~~~~~---~~g~---~~~~~l~~-~~~~~~-----~~f~~ikg~le~ll~~lgi~ 526 (586)
.|++++++|.+|+.+... ..|. ++..+.-+ .++... ..|..+....+.++..||++
T Consensus 301 LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~LgLp 368 (501)
T 1wle_A 301 LPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLH 368 (501)
T ss_dssp CSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 799999999999865430 1121 23333322 233332 34778889999999999998
No 51
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=94.37 E-value=0.27 Score=53.50 Aligned_cols=133 Identities=12% Similarity=0.135 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCc-------cCCchhhcccchHHHHHHHHhc
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPR-------TSDFEVVRTTLMPGILKTIGHN 466 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~-------s~e~~~lR~sLlpgLL~~l~~N 466 (586)
.+.+.+.+++.+...||+|+.+..|++.+........+.-.++.. +...- ..+--+||++--+++....+..
T Consensus 204 ~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l~~~e 283 (522)
T 3vbb_A 204 EQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDE 283 (522)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHTTSTTC
T ss_pred HHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHHHHhhh
Confidence 446778888888999999999999999887554433322123444 64321 1233478888888876554443
Q ss_pred cC--CCCCeeEEEeCcEeecCCCc---c-ccc---ccccEEEE-EEcCCCC--C---HHHHHHHHHHHHHHhCCCC
Q 007872 467 KD--HPKPIKIYEVGDVVLLDEKK---D-VGA---SCRRRLAA-LYCGANS--G---FELIHCLVDRIMEVIGTPF 527 (586)
Q Consensus 467 ~~--~~~~~~lFEiG~V~~~~~~~---~-~g~---~~~~~l~~-~~~~~~~--~---f~~ikg~le~ll~~lgi~~ 527 (586)
.. +..|++++++|.+|+....+ + .|. ++..+.-+ .++.+.. . |..+....+.++..||+++
T Consensus 284 i~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~e~il~~LGLpy 359 (522)
T 3vbb_A 284 WLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPY 359 (522)
T ss_dssp EECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred ecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHHHHHHHHcCCce
Confidence 32 34699999999999866532 1 222 23333322 2344332 2 6678888899999999983
No 52
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=94.13 E-value=0.086 Score=60.58 Aligned_cols=69 Identities=17% Similarity=0.316 Sum_probs=61.8
Q ss_pred CeEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhhHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHH
Q 007872 2 PTVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGI 81 (586)
Q Consensus 2 p~i~~~~~~l~~~~g~~~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~Gi 81 (586)
++|.++.+++.+++|.+++.+++.++|..+|++++... + .+.|.+|+-|+|+..-.=|
T Consensus 404 ~~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~~~-~---------------------~~~V~vPs~R~DI~~e~Dl 461 (795)
T 3pco_B 404 ATITLRRSKLDRLIGHHIADEQVTDILRRLGCEVTEGK-D---------------------EWQAVAPSWRFDMEIEEDL 461 (795)
T ss_dssp CEEEEEHHHHHHHHSSCCCHHHHHHHHHHHTCEEEEET-T---------------------EEEEECCSSCSSCSSHHHH
T ss_pred eEEEecHHHHHHHhCCCCCHHHHHHHHHHCCCeEEeCC-c---------------------eEEEECCCCccccCCccHH
Confidence 47999999999999999999999999999999996321 1 4999999999999999999
Q ss_pred HHHHHHHcCCC
Q 007872 82 AQALRVFNKQQ 92 (586)
Q Consensus 82 ARel~a~~g~~ 92 (586)
+-|++-++|-.
T Consensus 462 iEEVaRiyGyd 472 (795)
T 3pco_B 462 VEEVARVYGYN 472 (795)
T ss_dssp HHHHHHHHCGG
T ss_pred HHHHHHHhCcc
Confidence 99999999853
No 53
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=94.10 E-value=0.088 Score=60.58 Aligned_cols=70 Identities=17% Similarity=0.328 Sum_probs=61.8
Q ss_pred eEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhhHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHHH
Q 007872 3 TVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIA 82 (586)
Q Consensus 3 ~i~~~~~~l~~~~g~~~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiA 82 (586)
+|.++.+++.+++|.+++.+++.++|..+|++++. .++ .+.|.+|+-|+|+..-.=|+
T Consensus 408 ~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lg~~v~~-~~~---------------------~~~V~vPs~R~Di~~e~Dli 465 (795)
T 2rhq_B 408 PIDITAEKVNKTIGFNLSNDEIQSIFRQLGFETTL-KGE---------------------TLTVNVPSRRKDITIKEDLI 465 (795)
T ss_dssp EEEEEHHHHHHHHTCCCCHHHHHHHHHHTTCEEEE-ETT---------------------EEEEEEETTCTTCCSHHHHH
T ss_pred eEEecHHHHHHHhCCCCCHHHHHHHHHHCCCeEEe-CCc---------------------eEEEECCCCccccCCccHHH
Confidence 68999999999999999999999999999999952 111 48999999999999999999
Q ss_pred HHHHHHcCCCCC
Q 007872 83 QALRVFNKQQEI 94 (586)
Q Consensus 83 Rel~a~~g~~~~ 94 (586)
-|++-++|-..+
T Consensus 466 EEVaRiyGydnI 477 (795)
T 2rhq_B 466 EEVARIYGYDEI 477 (795)
T ss_dssp HHHHHHHCTTTS
T ss_pred HHHHHHhCcccC
Confidence 999999985433
No 54
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=94.02 E-value=0.094 Score=60.16 Aligned_cols=69 Identities=17% Similarity=0.289 Sum_probs=61.1
Q ss_pred eEEechHHHHHHhCCCCCHHHHHHHhhhcCCcccccchhhHHHhhhccccccCCCCCCceEEEEecCCCcccccCHHHHH
Q 007872 3 TVSVGRDRLFAALGKSYTKEEFEDLCFCFGIELDDVTTEKAIIRKEKHLDEEGDENDEEVIYKIEVPANRYDLLCLEGIA 82 (586)
Q Consensus 3 ~i~~~~~~l~~~~g~~~~~~e~~~~~~~~g~e~e~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ieit~NR~Dlls~~GiA 82 (586)
+|.++.+++.+++|.+++.+++.++|..+|++++. .+ + .+.|.+|+-|+|+..-.=|+
T Consensus 403 ~i~l~~~~i~~~lG~~i~~~~i~~iL~~Lg~~v~~-~~--------------------~-~~~V~vPs~R~Di~~e~Dli 460 (785)
T 1b7y_B 403 AIPFRPEYANRLLGTSYPEAEQIAILKRLGCRVEG-EG--------------------P-TYRVTPPSHRLDLRLEEDLV 460 (785)
T ss_dssp CEEECHHHHHHHHTCCCCHHHHHHHHHHTTCEEES-SS--------------------S-SEEEECCTTCCSCCSHHHHH
T ss_pred eEEecHHHHHHHhCCCCCHHHHHHHHHHCCCeEEe-CC--------------------c-eEEEECCCcccccCCccHHH
Confidence 69999999999999999999999999999999952 11 1 38999999999999999999
Q ss_pred HHHHHHcCCCC
Q 007872 83 QALRVFNKQQE 93 (586)
Q Consensus 83 Rel~a~~g~~~ 93 (586)
-|++-++|-..
T Consensus 461 EEVaRiyGydn 471 (785)
T 1b7y_B 461 EEVARIQGYET 471 (785)
T ss_dssp HHHHHHHCGGG
T ss_pred HHHHHHhCccc
Confidence 99999998533
No 55
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=93.95 E-value=0.26 Score=53.18 Aligned_cols=130 Identities=11% Similarity=0.083 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccC--CCC
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKD--HPK 471 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~--~~~ 471 (586)
...+.+-+++.+...||+|+.+..|++.+........+.-.++.. +.+. .+--+|+++-=+.+....+.-.. +..
T Consensus 211 ~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~--~~~~~L~PTaE~~l~~l~~~~i~sy~dL 288 (484)
T 3lss_A 211 QVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGD--GDKKYLIATSEMPIAAYHRGRWFTELKE 288 (484)
T ss_dssp HHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESS--SSCEEECSSTHHHHHHHTTTCEESCCSS
T ss_pred HHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecC--CcceEEeccCcHHHHHHHhccccchhhC
Confidence 456778888889999999999999999886444322111112344 6543 23347888877777544333322 346
Q ss_pred CeeEEEeCcEeecCCCc---c-ccc---ccccEEEE-EEcCCCC-----CHHHHHHHHHHHHHHhCCC
Q 007872 472 PIKIYEVGDVVLLDEKK---D-VGA---SCRRRLAA-LYCGANS-----GFELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 472 ~~~lFEiG~V~~~~~~~---~-~g~---~~~~~l~~-~~~~~~~-----~f~~ikg~le~ll~~lgi~ 526 (586)
|++++++|.+|+....+ + .|. ++..+.-+ .++.... .|..+....+.++..||++
T Consensus 289 Plr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LGLp 356 (484)
T 3lss_A 289 PLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLP 356 (484)
T ss_dssp CEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999999865421 1 222 23333222 3344433 2667778889999999998
No 56
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=93.93 E-value=0.22 Score=54.22 Aligned_cols=132 Identities=14% Similarity=0.121 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHH-HcCCCCCCCCce-eeCCc---cCCchhhcccchHHHHHHHHhccC-
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEIST-MLNRQTDESTAV-VGNPR---TSDFEVVRTTLMPGILKTIGHNKD- 468 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~-~l~~~~~~~~~v-l~NP~---s~e~~~lR~sLlpgLL~~l~~N~~- 468 (586)
.+.+.+.+|+.+.. ||+|+.+..|.+.+.... ......-.++.. +..-- ..+.-+||++.-+++....+.+..
T Consensus 74 ~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~~~~s 152 (501)
T 1nj1_A 74 RKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRS 152 (501)
T ss_dssp HHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCB
T ss_pred HHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHHhhhcc
Confidence 45678889999989 999999999998774211 000000012333 43210 023347999999999999998854
Q ss_pred -CCCCeeEEEeCcEeecCCCcccc---ccccc-EEEEEE--cCCC---CCHHHHHHHHHHHHHHhCCCC
Q 007872 469 -HPKPIKIYEVGDVVLLDEKKDVG---ASCRR-RLAALY--CGAN---SGFELIHCLVDRIMEVIGTPF 527 (586)
Q Consensus 469 -~~~~~~lFEiG~V~~~~~~~~~g---~~~~~-~l~~~~--~~~~---~~f~~ikg~le~ll~~lgi~~ 527 (586)
+..|+|++.+|.||+.+.....| .++.. +..+-+ +... ..+..+..+...+++.||+++
T Consensus 153 ~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~Lgl~~ 221 (501)
T 1nj1_A 153 HTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPY 221 (501)
T ss_dssp TTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCeE
Confidence 35799999999999866541223 24444 444322 2221 234556788899999999983
No 57
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=93.22 E-value=0.19 Score=50.18 Aligned_cols=112 Identities=14% Similarity=0.130 Sum_probs=75.3
Q ss_pred HHHHHH--HHHHHCCceEEecccccChHHHHHHcCCCCCCCCceeeCCccCCchhhcccchHHHHHHHHhccC-CC-CCe
Q 007872 398 FSDLMR--LEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKD-HP-KPI 473 (586)
Q Consensus 398 ~~~~lr--~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~vl~NP~s~e~~~lR~sLlpgLL~~l~~N~~-~~-~~~ 473 (586)
+++.+| +.+...||+|+.|..|-..+. +. . + .+... +.+.-.||+-+.|++. +.+.+ +. .|+
T Consensus 6 le~~~r~~~~~~~~Gy~eI~tP~le~~~l-~~---~--d----~f~d~-~g~~l~LRpd~T~~~a---~~~~~~~~~~p~ 71 (275)
T 1usy_A 6 FEKVFSFYSKATKKGFSPFFVPALEKAEE-PA---G--N----FFLDR-KGNLFSIREDFTKTVL---NHRKRYSPDSQI 71 (275)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEECSS-CC---S--S----CEEET-TSCEEEECCCHHHHHH---HHHTTCTTCCCE
T ss_pred HHHHHHHHHHHHHCCCEEecCccccchhh-hc---c--c----ccCCC-CCCEEEeCCcChHHHH---HHHhhcCCCCce
Confidence 344445 999999999999988876442 11 0 1 11111 3445689999999999 44444 35 789
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEcCCCCCH--HHHHHHHHHHHHHhCCC
Q 007872 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGF--ELIHCLVDRIMEVIGTP 526 (586)
Q Consensus 474 ~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f--~~ikg~le~ll~~lgi~ 526 (586)
|+|++|.||+.+.+. .++..++++=+.|...-. .++-.++..+++.+|++
T Consensus 72 R~~y~g~vfR~e~~~---~Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~lgl~ 123 (275)
T 1usy_A 72 KVWYADFVYRYSGSD---LVAEYQLGLEKVPRNSLDDSLEVLEIIVESASEFFEG 123 (275)
T ss_dssp EEECCEEEEEEETTE---EEEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHCCS
T ss_pred EEEEeceEEecCCCC---CCeeeEeCEEEecCCCchhHHHHHHHHHHHHHHcCCC
Confidence 999999999865432 267777776555543222 34557778889999986
No 58
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=93.16 E-value=0.11 Score=55.94 Aligned_cols=81 Identities=14% Similarity=0.170 Sum_probs=59.6
Q ss_pred hhhcccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCcceEEEeCCCCeeeecCcccCCc
Q 007872 164 HDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAH 243 (586)
Q Consensus 164 ~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~VI~D~~~~~lslagIigg~~ 243 (586)
+|.+++..|+..+...+++ .|.|.+.......++++. +.+..... .+..|+|+++++++++++|+--++.
T Consensus 375 ~~~~~~~~~l~vR~r~~GD-~~~~~g~~g~kklk~~f~----d~kIP~~~-----R~~~pll~~~~~~ii~v~g~~~~~~ 444 (464)
T 3a2k_A 375 VDPASVSLPLRVRTRRRGD-RMVLKGTGGTKKLKEIFI----EAKIPRME-----RDRWPIVEDADGRILWVPGLKKSAF 444 (464)
T ss_dssp ECSTTSCSCEEEEECCTTC-EEECSSSSCEEEHHHHHH----HTTCCHHH-----HHHCEEEEETTCCEEEETTTEECSC
T ss_pred ecHHHcCCCEEEeCCCCCC-EEEECCCCCCcCHHHHHH----hcCCCHHH-----HCCeeEEEECCCcEEEEeccccccc
Confidence 5888888898888877766 888887532234455543 34443321 2356999998557999999999999
Q ss_pred ceeccCCceEE
Q 007872 244 SAITLKTKNVF 254 (586)
Q Consensus 244 s~It~~T~nI~ 254 (586)
.+++++|++|+
T Consensus 445 ~~~~~~t~~~l 455 (464)
T 3a2k_A 445 EAQNRGQARYI 455 (464)
T ss_dssp SCCSSCSSCEE
T ss_pred cccCCCCceEE
Confidence 99999999985
No 59
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=92.87 E-value=0.46 Score=50.62 Aligned_cols=112 Identities=13% Similarity=0.061 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKP 472 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~ 472 (586)
...++.+.+|+.|...||.|+-|..|++... +...+.. + +-. ...-.||+|---- ++.++.. .
T Consensus 136 ~rs~i~~~ir~ff~~~gF~eV~TP~l~~~~~--------e~~~~~f~~-~~~-~~~~~L~~Spql~-~~~~~~g-----~ 199 (429)
T 1wyd_A 136 IQSLALKAFRETLYKEGFIEIFTPKIIASAT--------EGGAQLFPV-IYF-GKEAFLAQSPQLY-KELMAGV-----V 199 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEESSCS--------STTCCCCEE-EET-TEEEEECSCCHHH-HHHHHHH-----H
T ss_pred HHHHHHHHHHHHHhhCCCEEEECCEEEeeCC--------CCCceeEEE-ecC-CceEEecCCcHHH-HHHHHhC-----c
Confidence 3456788999999999999999999986521 1112223 3 211 1224666443222 2333332 4
Q ss_pred eeEEEeCcEeecCCCcc-cccccccEEEEEEcCCCCCHHHHHHHHHHHHHHh
Q 007872 473 IKIYEVGDVVLLDEKKD-VGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (586)
Q Consensus 473 ~~lFEiG~V~~~~~~~~-~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~l 523 (586)
.|+|+||+||+.++... ++..+..++-+-.++. ++.++..+++.++..+
T Consensus 200 ~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~--~~~dlm~~~e~ll~~l 249 (429)
T 1wyd_A 200 ERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFA--DYNDVMQLLEKILHNI 249 (429)
T ss_dssp SEEEEEEEEECCCCCCSSSCCSEEEEEEEEEETC--CHHHHHHHHHHHHHHH
T ss_pred CceEEEcccccccCCccccccceeeEeeeeecCC--CHHHHHHHHHHHHHHH
Confidence 69999999998765422 3334677777666664 6888888887776544
No 60
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=92.60 E-value=0.42 Score=52.14 Aligned_cols=134 Identities=16% Similarity=0.082 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHH-HcCCCCCCCCce-eeCCc---cCCchhhcccchHHHHHHHHhccC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEIST-MLNRQTDESTAV-VGNPR---TSDFEVVRTTLMPGILKTIGHNKD 468 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~-~l~~~~~~~~~v-l~NP~---s~e~~~lR~sLlpgLL~~l~~N~~ 468 (586)
-.+.+.+.+|+.+...||+|+.+..|.+.+.... ......-.++.. +..-- ..+--+|||+--|++....+...+
T Consensus 57 i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~~i~ 136 (518)
T 3ial_A 57 MENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVR 136 (518)
T ss_dssp HHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHHhhhc
Confidence 3457888999999999999999999988764211 000000012333 44211 123458999999999999887664
Q ss_pred --CCCCeeEEEeCcEeecCCCcccc---cccccEEEEEEcC--CC---CCHHHHHHHHHHHH-HHhCCCC
Q 007872 469 --HPKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAALYCG--AN---SGFELIHCLVDRIM-EVIGTPF 527 (586)
Q Consensus 469 --~~~~~~lFEiG~V~~~~~~~~~g---~~~~~~l~~~~~~--~~---~~f~~ikg~le~ll-~~lgi~~ 527 (586)
+.+|+|++++|.||+.+.....| .++..+.-+-..+ .. ..+..+..+...++ +.||+++
T Consensus 137 SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~~i~~~~LGlp~ 206 (518)
T 3ial_A 137 SYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDELCFKG 206 (518)
T ss_dssp BGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHTTTTCCCC
T ss_pred ccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence 35799999999999865322223 2344443333332 11 12444555667888 8899974
No 61
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=92.43 E-value=0.5 Score=50.38 Aligned_cols=111 Identities=9% Similarity=0.037 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHH-HHhccCCCC
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKT-IGHNKDHPK 471 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~-l~~N~~~~~ 471 (586)
...++.+.+|+.|...||.|+-|..|.+... +...+.. + | .....-.||+| |.|... +.. .
T Consensus 137 ~rs~i~~~ir~~f~~~gF~eVeTP~l~~~~~--------e~~~~~f~~-~-~~~~~~~Lr~S--pel~~~~~~~-----g 199 (434)
T 1x54_A 137 VKETLIMAAREWLLKDGWHEVFPPILVTGAV--------EGGATLFKL-K-YFDKYAYLSQS--AQLYLEAAIF-----G 199 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEESCCS--------SCGGGCCEE-E-ETTEEEEECSC--SHHHHHHHHH-----H
T ss_pred HHHHHHHHHHHHHHHCCCEEEeCcEEEeecC--------CCCceeEEE-e-ecCCcEEeccC--hHHHHHHHhc-----C
Confidence 3456788999999999999999999986521 1112223 3 1 11223467744 333322 221 1
Q ss_pred CeeEEEeCcEeecCCCcc-cccccccEEEEEEcCCCCCHHHHHHHHHHHHHHh
Q 007872 472 PIKIYEVGDVVLLDEKKD-VGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (586)
Q Consensus 472 ~~~lFEiG~V~~~~~~~~-~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~l 523 (586)
+.|+|++|+||+.+.... ++..+.+++-+-+++. ++.++..+++.++..+
T Consensus 200 ~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~--~~~dlm~~~e~ll~~l 250 (434)
T 1x54_A 200 LEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWM--DLWDIMKVEEELVSYM 250 (434)
T ss_dssp HSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETC--CHHHHHHHHHHHHHHH
T ss_pred ccceEEEecceecCCCCCcccccEEEEeeEEEcCC--CHHHHHHHHHHHHHHH
Confidence 579999999998765422 3334677777766765 6999888888877654
No 62
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=91.67 E-value=1.6 Score=47.57 Aligned_cols=133 Identities=14% Similarity=0.101 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHCCceEEecccccChHHHHHH-cCCCCC-CCCce-eeCCcc---CCchhhcccchHHHHHHHHhcc
Q 007872 394 ALNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTM-LNRQTD-ESTAV-VGNPRT---SDFEVVRTTLMPGILKTIGHNK 467 (586)
Q Consensus 394 ~~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~-l~~~~~-~~~~v-l~NP~s---~e~~~lR~sLlpgLL~~l~~N~ 467 (586)
-.+.+.+.+|+.+...||+|+.+..|.+.+. +.. .+.... .++.. +..--. .+.-+|||+--|++....+...
T Consensus 63 i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l-~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~~i 141 (519)
T 4hvc_A 63 IWEAIKDFFDAEIKKLGVENCYFPMFVSQSA-LEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWV 141 (519)
T ss_dssp HHHHHHHHHHHHHHHTTCEECBCCSEEEHHH-HTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCEEEeccccccHHH-HhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHHhhc
Confidence 3456888899999999999999999998874 321 111110 12233 432111 1235899999999999888776
Q ss_pred C--CCCCeeEEEeCcEeecCCCcccc---cccccEEEEE--EcCCC---CCHHHHHHHHHHHHHHh-CCCC
Q 007872 468 D--HPKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAAL--YCGAN---SGFELIHCLVDRIMEVI-GTPF 527 (586)
Q Consensus 468 ~--~~~~~~lFEiG~V~~~~~~~~~g---~~~~~~l~~~--~~~~~---~~f~~ikg~le~ll~~l-gi~~ 527 (586)
+ +.+|+|++++|.||+.+.....| .++..+..+- .+... .-+..+..+...++..| ++++
T Consensus 142 ~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~~~i~~~ll~lp~ 212 (519)
T 4hvc_A 142 QSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAIPV 212 (519)
T ss_dssp SSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred cccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 4 34799999999999865332233 2333333332 22221 22444556777788876 7773
No 63
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=89.92 E-value=0.8 Score=49.36 Aligned_cols=131 Identities=8% Similarity=0.104 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhcc-C---C
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNK-D---H 469 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~-~---~ 469 (586)
.+.+.+.+++.+...||+|+.+..|++.+........+.-.++.. +.+. .+--+|+++-=..+-...+... + +
T Consensus 188 ~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~--~~~~~LipTaE~pl~~l~~~ei~~S~y~ 265 (485)
T 3qne_A 188 NQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDG--EDEKYLIATSEQPISAYHAGEWFESPAE 265 (485)
T ss_dssp HHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEET--TEEEEECSSTHHHHHHHTTTCEESSHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCC--CCeEEEeccccHHHHHHHhccccccchh
Confidence 345777888888999999999999999886444322111112344 6542 2223454443333333322222 2 2
Q ss_pred CCCeeEEEeCcEeecCCCc---c-ccc---ccccEEEE-EEcCCC---CCHHHHHHHHHHHHHHhCCCC
Q 007872 470 PKPIKIYEVGDVVLLDEKK---D-VGA---SCRRRLAA-LYCGAN---SGFELIHCLVDRIMEVIGTPF 527 (586)
Q Consensus 470 ~~~~~lFEiG~V~~~~~~~---~-~g~---~~~~~l~~-~~~~~~---~~f~~ikg~le~ll~~lgi~~ 527 (586)
.+|++++++|.+|+..... + .|. ++..+.-+ .++... ..|..+....+.++..||+++
T Consensus 266 dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe~s~~e~e~ml~~~e~il~~LgLpy 334 (485)
T 3qne_A 266 QLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSLGLPY 334 (485)
T ss_dssp HCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred cCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCHHHHHHHHHHHHHHHHHHHHHCCCcE
Confidence 3699999999999765432 1 222 23332222 233332 236778888999999999983
No 64
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=88.52 E-value=2.9 Score=45.17 Aligned_cols=111 Identities=16% Similarity=0.096 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-ee-CCccCCchhhcccchHHHHH-HHHhccCCCCC
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VG-NPRTSDFEVVRTTLMPGILK-TIGHNKDHPKP 472 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~-NP~s~e~~~lR~sLlpgLL~-~l~~N~~~~~~ 472 (586)
.++.+.+|+.|...||.||-|..|++... + ...+.. +. |-... .-.||+| |.|.. .+-. +-.
T Consensus 178 s~i~~~iR~ff~~~gF~EVeTPiL~~~~~-----G---a~a~~F~~~~~~~~~-~~yLr~S--pqLylk~l~v----~G~ 242 (493)
T 3a74_A 178 SLIIQSMRRYLDSHGYLEVETPMMHAVAG-----G---AAARPFITHHNALDM-TLYMRIA--IELHLKRLIV----GGL 242 (493)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCC-----S---SSSCCCEEEETTTTE-EEEECSC--SHHHHHHHHH----TTC
T ss_pred HHHHHHHHHHHHhCCeEEEECCeEEecCC-----C---CcccceEecccCCCc-eeEEecC--HHHHHHHHhh----ccc
Confidence 45778899999999999999999996421 1 001223 32 43332 3468865 44433 2111 123
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHh
Q 007872 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (586)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~l 523 (586)
-|+||||++|+.++....+..|.+++-+=.+. +++.++-.+++.++..+
T Consensus 243 ~rVyeig~~FR~E~~~~rH~pEFT~lE~e~af--~d~~dlm~l~E~ll~~l 291 (493)
T 3a74_A 243 EKVYEIGRVFRNEGISTRHNPEFTMLELYEAY--ADFRDIMKLTENLIAHI 291 (493)
T ss_dssp CEEEEEEEEECCCCCBTTBCSEEEEEEEEEET--CCHHHHHHHHHHHHHHH
T ss_pred CceEEECccccCCCCCcccCCceeEEEEEecC--CCHHHHHHHHHHHHHHH
Confidence 69999999998766544455566666654454 47888877777776544
No 65
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=88.17 E-value=2.3 Score=46.18 Aligned_cols=111 Identities=9% Similarity=0.032 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-ee-CCccCCchhhcccchHHHHH-HHHhccCCCCC
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VG-NPRTSDFEVVRTTLMPGILK-TIGHNKDHPKP 472 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~-NP~s~e~~~lR~sLlpgLL~-~l~~N~~~~~~ 472 (586)
.++.+.+|+.|...||.||-|..|++... + ...+.. +. |-... .-+||+|- .|.. .+-. +--
T Consensus 187 s~i~~~iR~f~~~~gFlEVeTPiL~~~~~-----G---a~ar~F~t~~~~~~~-~~yL~~Sp--qLylk~L~v----~G~ 251 (504)
T 1e1o_A 187 SKILAAIRQFMVARGFMEVETPMMQVIPG-----G---ASARPFITHHNALDL-DMYLRIAP--ELYLKRLVV----GGF 251 (504)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEESSCC-----S---SCCCCCEEEETTTTE-EEEECSCS--HHHHHHHHH----HTC
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEecCC-----C---CcccceEeccCCCCc-eEEeccCH--HHHHHHHhh----cCC
Confidence 35778899999999999999999996421 1 001222 32 43332 24688653 3332 2211 112
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHh
Q 007872 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (586)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~l 523 (586)
-|+||||++|+.++....+..|.+++-+=.+. +++.++-.+++.++..+
T Consensus 252 ~rVyeIg~~FR~E~~~~rH~pEFt~lE~e~af--~d~~dlm~l~E~li~~~ 300 (504)
T 1e1o_A 252 ERVFEINRNFRNEGISVRHNPEFTMMELYMAY--ADYHDLIELTESLFRTL 300 (504)
T ss_dssp CEEEEEEEEECCCCCCC-CCSEEEEEEEEEES--CCHHHHHHHHHHHHHHH
T ss_pred CcEEEEcccccCCCCCccccCceeeeeeeecC--CCHHHHHHHHHHHHHHH
Confidence 58999999998766544445566666654444 47888877777776543
No 66
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=87.72 E-value=2.2 Score=43.97 Aligned_cols=112 Identities=13% Similarity=-0.030 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-ee--CCccC--CchhhcccchHHHHHH--HHhcc
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VG--NPRTS--DFEVVRTTLMPGILKT--IGHNK 467 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~--NP~s~--e~~~lR~sLlpgLL~~--l~~N~ 467 (586)
..++.+.+|+.|...||.||-|..|++.... .....+. +. .|-.. ..-+||+| |.|.+- ++...
T Consensus 39 Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~-------~a~~~~F~~~~~~~~~~~~~~~yL~~S--pql~~k~l~~~g~ 109 (345)
T 3a5y_A 39 RAAIMAEIRRFFADRGVLEVETPCMSQATVT-------DIHLVPFETRFVGPGHSQGMNLWLMTS--PEYHMKRLLVAGC 109 (345)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESSCCC-------CTTCCCCEEEECCSTTSCCEEEEECSC--SHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEEecCCC-------CCccceEEEEecCcccccCCCEeecCC--HHHHHHHHHHcCC
Confidence 3467888999999999999999999964310 0001122 21 13111 12357766 333322 33322
Q ss_pred CCCCCeeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHH
Q 007872 468 DHPKPIKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEV 522 (586)
Q Consensus 468 ~~~~~~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~ 522 (586)
-|+||||+||+.++.+..+..|..++-+=.+. .++.++-.++|.++..
T Consensus 110 -----~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af--~d~~d~m~~~E~li~~ 157 (345)
T 3a5y_A 110 -----GPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPH--YDMYRLMNEVDDLLQQ 157 (345)
T ss_dssp -----CSEEEEEEEECCCCCBTTBCSEEEEEEEEEET--CCHHHHHHHHHHHHHH
T ss_pred -----CcEEEEEcceeCCCCcccccchhheeeeeeeC--CCHHHHHHHHHHHHHH
Confidence 38999999998766544444556666543344 3788888877777654
No 67
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=87.48 E-value=1.9 Score=47.05 Aligned_cols=111 Identities=10% Similarity=0.082 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce--eeCCccCCchhhcccchHHHHHH-HHhccCCCCC
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV--VGNPRTSDFEVVRTTLMPGILKT-IGHNKDHPKP 472 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v--l~NP~s~e~~~lR~sLlpgLL~~-l~~N~~~~~~ 472 (586)
.++.+.+|+.|...||.||-|..|++... + ....+. -.|-...+ -+||.| |.|..- +.. .+.
T Consensus 180 s~i~~~iR~f~~~~gF~EVeTPiL~~~~g-----G---a~a~~F~t~~~~~~~~-~yL~~S--pqL~lk~liv---~g~- 244 (521)
T 3bju_A 180 SKIITYIRSFLDELGFLEIETPMMNIIPG-----G---AVAKPFITYHNELDMN-LYMRIA--PELYHKMLVV---GGI- 244 (521)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCC-----S---SSCCCCEEEETTTTEE-EEECSC--SHHHHHHHHH---TTC-
T ss_pred HHHHHHHHHHHHHCCCEEEeCceeeccCC-----C---ccccceeeecccCCcc-eEeeCC--HHHHHHHHHh---cCc-
Confidence 35678899999999999999999986421 1 001222 23444332 478866 555432 221 112
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHh
Q 007872 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (586)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~l 523 (586)
-|+||||++|+.++...++..|.+++-+=.+. +++.++-.+++.++..+
T Consensus 245 ~rVyeig~~FR~E~~~trH~pEFtmlE~e~af--~d~~dlm~l~E~li~~v 293 (521)
T 3bju_A 245 DRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAY--ADYHDLMEITEKMVSGM 293 (521)
T ss_dssp CEEEEEEEEECCSCCBTTBCSEEEEEEEEEET--CCHHHHHHHHHHHHHHH
T ss_pred CceEEEEcceeCCCCCCccchhhhhhhhhhhc--CCHHHHHHHHHHHHHHH
Confidence 48999999998765543444555666543344 47899888888777644
No 68
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=87.18 E-value=2.9 Score=46.40 Aligned_cols=112 Identities=12% Similarity=0.102 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHH-HCCceEEecccccChHHHHHHcCCCCCCCCcee-eCCccCCchhhcccchHHHHHHHHhccCCCCCe
Q 007872 396 NEFSDLMRLEIA-MNGFTEVLTWILCSSKEISTMLNRQTDESTAVV-GNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (586)
Q Consensus 396 ~~~~~~lr~~l~-~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~vl-~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~ 473 (586)
.++.+.+|+.|. ..||.||-|..|++... ......++ .|-. ..+-.||+| |.|.+-+.-- .+. -
T Consensus 152 s~i~~~iR~f~~~~~gF~EVeTPiL~~st~--------~GA~~F~v~~~~~-g~~~~L~qS--pql~kq~l~v--~g~-~ 217 (617)
T 4ah6_A 152 SQMVMKMREYLCNLHGFVDIETPTLFKRTP--------GGAKEFLVPSREP-GKFYSLPQS--PQQFKQLLMV--GGL-D 217 (617)
T ss_dssp HHHHHHHHHHHHTTSCCEECCCCSSBCCCC--------SSSCCCEEECSST-TCEEECCSS--TTHHHHHHHH--TSC-S
T ss_pred HHHHHHHHHHHHhcCCeEEEeCCeeccCCC--------CCCcCceeccccC-CcccccccC--HHHHHHHHHh--ccc-C
Confidence 457788999997 69999999999986321 11112222 2211 223367766 4444332110 112 4
Q ss_pred eEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHh
Q 007872 474 KIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (586)
Q Consensus 474 ~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~l 523 (586)
|+||||++|+.++.......|..++-+=.+. .+++++-.+++.++..+
T Consensus 218 rvfqi~~~FR~E~~~t~r~pEFt~lE~e~af--~d~~d~m~~~E~l~~~~ 265 (617)
T 4ah6_A 218 RYFQVARCYRDEGSRPDRQPEFTQIDIEMSF--VDQTGIQSLIEGLLQYS 265 (617)
T ss_dssp EEEEEEEEECCCSSCSSSCSEEEEEEEEEES--CCHHHHHHHHHHHHHHH
T ss_pred cEEEEEhheecccCCCCcCcceecceeeecC--CCHHHHHHHHHHHHHHH
Confidence 8999999998654432333445555543343 47999999999999876
No 69
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=87.15 E-value=1.2 Score=45.84 Aligned_cols=143 Identities=10% Similarity=-0.024 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCC-----------------------ccCCchh
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNP-----------------------RTSDFEV 450 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP-----------------------~s~e~~~ 450 (586)
...+.+.+|+ ....||+|+.+..+++.+.....-..+.-.+... +... +..+--+
T Consensus 67 ~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l~~~d~~ 145 (346)
T 3mf2_A 67 VERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSPADLV 145 (346)
T ss_dssp HHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEEEEEEE
T ss_pred HHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhccccccccccCCCCEE
Confidence 3456667777 7788999999999999986433211110012222 3211 0112346
Q ss_pred hcccchHHHHHHHHhc-cCCCCCeeEEEeCcEeecCCCc-ccccccccEEEEEEcCCC----CCHHHHHHHHHHHHHHhC
Q 007872 451 VRTTLMPGILKTIGHN-KDHPKPIKIYEVGDVVLLDEKK-DVGASCRRRLAALYCGAN----SGFELIHCLVDRIMEVIG 524 (586)
Q Consensus 451 lR~sLlpgLL~~l~~N-~~~~~~~~lFEiG~V~~~~~~~-~~g~~~~~~l~~~~~~~~----~~f~~ikg~le~ll~~lg 524 (586)
|.++-=|.+....+.- .....|+++.+.|.||+.+.+- -...++..+.-++..+.. .-++.+...++.+++.||
T Consensus 146 LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~~~tpEqs~~e~e~l~~~ae~il~~Lg 225 (346)
T 3mf2_A 146 LSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLG 225 (346)
T ss_dssp ECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEEEESHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 8899999999988853 4434589999999999876531 011234555555544332 235567788889999999
Q ss_pred CCCCCCCCCccEEEEecCCCCcc
Q 007872 525 TPFVPVGDDTGYYIQRSDEPEFL 547 (586)
Q Consensus 525 i~~~~~~~~~~~~~~~~~~~~f~ 547 (586)
++ |.+....++.|-
T Consensus 226 Lp---------yrv~~~~D~~f~ 239 (346)
T 3mf2_A 226 LT---------FRVDYASDPFFG 239 (346)
T ss_dssp CC---------CEEEECCCCCCH
T ss_pred CC---------EEEEEccCCCcC
Confidence 98 555544444443
No 70
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=86.94 E-value=2.3 Score=46.56 Aligned_cols=108 Identities=14% Similarity=0.100 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCceeeCCccCCchhhcccchHHHH--HHHHhccCCCCCe
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGIL--KTIGHNKDHPKPI 473 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~vl~NP~s~e~~~lR~sLlpgLL--~~l~~N~~~~~~~ 473 (586)
.++.+.+|+.|...||.||-|..|++..- -. +.+.+..|-...+ ..||+| |.|. ..++. +. -
T Consensus 248 s~i~~~iR~ff~~~gF~EVeTPiL~~~~~-eg-------ga~~F~v~~~~~~-~yL~~S--pql~~k~ll~~----g~-~ 311 (548)
T 3i7f_A 248 SACCGLFREFLTSQKFVEIHTPKLIGCSS-EG-------GSNIFEVKYFDRK-AYLAQS--PQLYKQMAIMG----DF-R 311 (548)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSBC----------------------------CCBCSC--THHHHHHHHTT----TC-C
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEecccC-CC-------CcceeEEecCCCc-eEeccC--HHHHHHHHHhc----Cc-C
Confidence 35677889999999999999999987641 00 0111211222222 367776 4554 33332 22 5
Q ss_pred eEEEeCcEeecCCCc-ccccccccEEEEEEcCCCCCHHHHHHHHHHHH
Q 007872 474 KIYEVGDVVLLDEKK-DVGASCRRRLAALYCGANSGFELIHCLVDRIM 520 (586)
Q Consensus 474 ~lFEiG~V~~~~~~~-~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll 520 (586)
|+||||++|+.++.. ..+..+..++-+=++ -..++.++-.+++.++
T Consensus 312 rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~a-f~~d~~d~m~~~E~li 358 (548)
T 3i7f_A 312 KVFEVGPVFRAENSNTRRHLTEFEGLDIEME-IVENYHECIDVMEKLF 358 (548)
T ss_dssp EEEEEEEECCCSCCCSSSCCSCEEEEEEEEE-CSSCTHHHHHHHHHHH
T ss_pred cEEEEeeeEecCCCCCCCcchhhhchhhhhh-hhcCHHHHHHHHHHHH
Confidence 899999999866532 233445556543211 1224566555555444
No 71
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=86.84 E-value=1.5 Score=46.46 Aligned_cols=112 Identities=13% Similarity=0.027 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCCe
Q 007872 395 LNEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPI 473 (586)
Q Consensus 395 ~~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~ 473 (586)
..++.+.+|+.|...||.|+-|..|.+.... ...+.. + + .-...-.||+|---- ++.+. + + ..
T Consensus 128 rs~i~~~ir~~f~~~gF~EV~TPil~~~~~e--------~~~~~f~~-~-~~g~~~~L~~Spel~-~~~l~-~---g-~~ 191 (422)
T 1n9w_A 128 QAALVRGFRRYLDRQDFTEIFTPKVVRAGAE--------GGSGLFGV-D-YFEKRAYLAQSPQLY-KQIMV-G---V-FE 191 (422)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCC--------------------------------------CHHH-HHHHH-H---H-HS
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEEEeCCC--------CCceeEEE-e-eCCCcEEeeeCHHHH-HHHHh-h---C-CC
Confidence 4467889999999999999999999865320 001222 3 1 111224667443222 24443 2 1 36
Q ss_pred eEEEeCcEeecCCCcc-cccccccEEEEEEcCCCCCHHHHHHHHHHHHHHh
Q 007872 474 KIYEVGDVVLLDEKKD-VGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (586)
Q Consensus 474 ~lFEiG~V~~~~~~~~-~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~l 523 (586)
|+|+||+||+.+.... ++..+..++-+-.++. .++.++-.+++.++..+
T Consensus 192 rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~-~d~~dlm~l~e~ll~~l 241 (422)
T 1n9w_A 192 RVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFI-ADEEDLMRLEEALLAEM 241 (422)
T ss_dssp EEEEEEEC-------------CCEEEEEEEESC-SSHHHHHHHHHHHHHHH
T ss_pred ceeEEeCceECCCCCCCcccceeEEeeeeeeCC-CCHHHHHHHHHHHHHHH
Confidence 9999999998765422 2334667777656663 15777666666655433
No 72
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=86.72 E-value=3.6 Score=43.81 Aligned_cols=109 Identities=13% Similarity=0.127 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHHHHHhccCCCCCee
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~~ 474 (586)
.++.+.+|+.|...||.||-|..|++..- +.+.+.+ +... ...-.||+| |.|.+-.. ...+ --|
T Consensus 141 s~i~~~iR~f~~~~gF~EVeTPiL~~~~~--------eg~~~~f~~~~~--~~~~yL~~S--pql~~q~l--~~~g-~~r 205 (438)
T 3nem_A 141 SSVFKAVRDFFHENGFIEIHTPKIIATAT--------EGGTELFPMKYF--EEDAFLAQS--PQLYKQIM--MASG-LDR 205 (438)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCS--------SCSSSCCEEEET--TEEEEECSC--SHHHHHHG--GGTT-CCE
T ss_pred HHHHHHHHHHHHHCCcEEEeCCEEecCCC--------CCCccceeEeeC--CccEEEecC--hHHHHHHH--HhcC-CCc
Confidence 46788899999999999999999987531 1112233 3211 112356655 45543321 1112 259
Q ss_pred EEEeCcEeecCCCc-ccccccccEEEEEEcCCCCC-HHHHHHHHHHHHH
Q 007872 475 IYEVGDVVLLDEKK-DVGASCRRRLAALYCGANSG-FELIHCLVDRIME 521 (586)
Q Consensus 475 lFEiG~V~~~~~~~-~~g~~~~~~l~~~~~~~~~~-f~~ikg~le~ll~ 521 (586)
+||||++|+.++.. ..+..|..++-+=.+. ++ ++++-.+++.++.
T Consensus 206 vf~i~~~FR~E~~~t~RH~pEFt~le~e~a~--~~~~~d~m~~~E~li~ 252 (438)
T 3nem_A 206 VYEIAPIFRAEEHNTTRHLNEAWSIDSEMAF--IEDEEEVMSFLERLVA 252 (438)
T ss_dssp EEEEEEEECCCSSCCTTCCSEEEEEEEEEES--CSSHHHHHHHHHHHHH
T ss_pred eEEEcceEECCCCCCcccccceeeeeeeecc--CccHHHHHHHHHHHHH
Confidence 99999999866542 1233455666543343 34 7777666666553
No 73
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=86.64 E-value=2.2 Score=46.44 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHHH-H-HHhccCCCCC
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGILK-T-IGHNKDHPKP 472 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL~-~-l~~N~~~~~~ 472 (586)
.++.+.+|+.|...||.||-|..|++... +. ..+..+ -.|-...+ -+||.| |.|-. . ++. +.
T Consensus 208 s~i~~~iR~ff~~~gFlEVeTPiL~~~~g-----GA--~a~pF~t~~n~~~~~-~yL~~S--pqLylk~L~v~----G~- 272 (529)
T 4ex5_A 208 TKAIASIRKFMGDADFMEVETPMLHPIPG-----GA--AAKPFVTHHNALDME-MFLRIA--PELYLKRLIVG----GF- 272 (529)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCC-----SS--SSCCCEEEETTTTEE-EEECSC--SHHHHHHHHHT----TC-
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeccCC-----CC--cccccccccccCCcc-eecccC--HHHHHHHHHhc----CC-
Confidence 35778899999999999999999996421 00 001112 23443333 257765 45552 2 222 11
Q ss_pred eeEEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHH
Q 007872 473 IKIYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEV 522 (586)
Q Consensus 473 ~~lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~ 522 (586)
-|+||||++|+.++...++..|.+.+-+=.+. +++.++-.+++.++..
T Consensus 273 ~rVyeIg~~FR~E~~~~rH~pEFtmlE~e~af--~d~~dlm~l~E~li~~ 320 (529)
T 4ex5_A 273 ERVFEINRNFRNEGVSPRHNPEFTMMEFYAAY--TDYRWLMDFTERLIRQ 320 (529)
T ss_dssp SEEEEEEEEECCSCCBTTBCSEEEEEEEEEET--CCHHHHHHHHHHHHHH
T ss_pred CcEEEeehheecCCCCCCcccHhHhhhhhhhc--CCHHHHHHHHHHHHHH
Confidence 58999999998765543444555565543343 4788888777777654
No 74
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=85.71 E-value=1.5 Score=47.55 Aligned_cols=78 Identities=8% Similarity=-0.005 Sum_probs=51.0
Q ss_pred hhhcccchHHH----HHHHHhccCCCCCeeEEEeCcEeecCCCcccc---cccccEEEEE-EcCC-CC--CHHHHHHHHH
Q 007872 449 EVVRTTLMPGI----LKTIGHNKDHPKPIKIYEVGDVVLLDEKKDVG---ASCRRRLAAL-YCGA-NS--GFELIHCLVD 517 (586)
Q Consensus 449 ~~lR~sLlpgL----L~~l~~N~~~~~~~~lFEiG~V~~~~~~~~~g---~~~~~~l~~~-~~~~-~~--~f~~ikg~le 517 (586)
-+||+...+|+ -+.+..+ ++..|++++++|.+|+.+...-.| .++..+.-+- ++.. .+ .+.++.....
T Consensus 183 ~~LRPE~t~~i~~~~~~~~~sy-~r~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~~f~~~e~~~~~~~~~i~~~~ 261 (505)
T 1ati_A 183 AYLRPETAQGIFVNFKNVLDAT-SRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERL 261 (505)
T ss_dssp EEECSSSHHHHHHTHHHHHHHH-TCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECGGGHHHHHHHHHHHHH
T ss_pred eeecccchhHHHHHHHHHHHhc-CCCCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEEEEECHHHHHHHHHHHHHHHH
Confidence 47999999998 3444444 236899999999999765332122 2444333332 2222 22 2778889999
Q ss_pred HHHHHhCCCC
Q 007872 518 RIMEVIGTPF 527 (586)
Q Consensus 518 ~ll~~lgi~~ 527 (586)
.++..||++.
T Consensus 262 ~i~~~LGl~~ 271 (505)
T 1ati_A 262 KWWQEMGLSR 271 (505)
T ss_dssp HHHHHTTCCG
T ss_pred HHHHHcCCCe
Confidence 9999999974
No 75
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=85.45 E-value=5.7 Score=43.78 Aligned_cols=113 Identities=13% Similarity=0.082 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCcee-eCCccCCchhhcccchHHHHHHHHhccCCCCCee
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVV-GNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~vl-~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~~ 474 (586)
.++.+.+|+.|...||.||-|..|++..- ....+.++ .|-...++=.||+| |.|.+-+--= .+. -|
T Consensus 148 s~i~~~iR~fl~~~gF~EVeTPiL~~s~~--------eGAr~F~v~~~~~~~~~y~L~qS--PQl~kq~Lmv--~G~-~r 214 (580)
T 1l0w_A 148 HRVIKAIWDFLDREGFVQVETPFLTKSTP--------EGARDFLVPYRHEPGLFYALPQS--PQLFKQMLMV--AGL-DR 214 (580)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSSBCCCS--------SSSCCCEEECTTSTTEEEECCSC--SHHHHHHHHH--TTC-SE
T ss_pred HHHHHHHHHHHHhCCcEEEeCCEEecCCC--------CCCCCccccccccCCceeECccC--HHHHHHHHHH--hcc-CC
Confidence 45678899999999999999999995321 01122222 12111223247764 6665543110 122 48
Q ss_pred EEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHh
Q 007872 475 IYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (586)
Q Consensus 475 lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~l 523 (586)
+||||++|+.++...+..-|..++-+=.+. ++++++-.++|.++..+
T Consensus 215 vfqI~~~FR~E~~~~~r~pEFT~lE~e~af--~d~~dvm~~~E~li~~i 261 (580)
T 1l0w_A 215 YFQIARCFRDEDLRADRQPDFTQLDLEMSF--VEVEDVLELNERLMAHV 261 (580)
T ss_dssp EEEEEEEECCCCCCSSCCSEEEEEEEEEES--CCHHHHHHHHHHHHHHH
T ss_pred eEEEeceeeCCCCCCCcCCCccceeeeecC--CCHHHHHHHHHHHHHHH
Confidence 999999998665432222355555543333 47888888777776544
No 76
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=85.40 E-value=6.3 Score=43.50 Aligned_cols=113 Identities=10% Similarity=0.118 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCcee-eCCccCCchhhcccchHHHHHHHHhccCCCCCee
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVV-GNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIK 474 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~vl-~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~~ 474 (586)
.++.+.+|+.|...||.||-|..|++..- ....+.++ .|-...++=.||+| |.|.+-+--= .+. =|
T Consensus 142 s~i~~~iR~fl~~~gFlEVeTPiL~~s~~--------eGAr~F~v~~~~~~~~~y~L~qS--PQl~kq~Lmv--~G~-~r 208 (585)
T 1c0a_A 142 AKITSLVRRFMDDHGFLDIETPMLTKATP--------EGARDYLVPSRVHKGKFYALPQS--PQLFKQLLMM--SGF-DR 208 (585)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSSBCCCS--------SSSCCCEEECSSSTTCEEECCSC--SHHHHHHHHH--TTC-CE
T ss_pred HHHHHHHHHHHHhCCcEEEeCCEEecCCC--------CCCccceecccccCCceEeCccC--HHHHHHHHHh--cCC-Cc
Confidence 45778899999999999999999995321 11122222 22122233347764 5665442110 122 48
Q ss_pred EEEeCcEeecCCCcccccccccEEEEEEcCCCCCHHHHHHHHHHHHHHh
Q 007872 475 IYEVGDVVLLDEKKDVGASCRRRLAALYCGANSGFELIHCLVDRIMEVI 523 (586)
Q Consensus 475 lFEiG~V~~~~~~~~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~l 523 (586)
+||||++|+.++...+..-|..++-+=.+. ++++++-.++|.++..+
T Consensus 209 vfqI~~~FR~E~~~t~r~pEFT~lE~e~af--~d~~dvm~~~E~li~~i 255 (585)
T 1c0a_A 209 YYQIVKCFRDEDLRADRQPEFTQIDVETSF--MTAPQVREVMEALVRHL 255 (585)
T ss_dssp EEEEEEEECCCCCBTTBCSEEEEEEEEEES--CCHHHHHHHHHHHHHHH
T ss_pred eEEEeceeecCCCCCCcCcccceeeeeecC--CCHHHHHHHHHHHHHHH
Confidence 999999998655432222255555443333 46888887777776543
No 77
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=84.82 E-value=2.2 Score=45.42 Aligned_cols=110 Identities=8% Similarity=-0.015 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCceeeCCccCCchhhcccchHHHHHHHHhccCCCCCeeE
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKTIGHNKDHPKPIKI 475 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~vl~NP~s~e~~~lR~sLlpgLL~~l~~N~~~~~~~~l 475 (586)
.++.+.+|+.|...||.||-|..|++..- ..+....-.|-.. ....||.| |.|..-+.- . + --|+
T Consensus 136 s~i~~~iR~ff~~~gFlEVeTPiL~~s~~--------eG~~~~F~~~~~g-~~~~L~~S--pqLylq~l~--~-g-~~rv 200 (435)
T 2xgt_A 136 AAATRAMREHFYNAGYVEVAPPTLVQTQV--------EGGSTLFNLDYFG-EQSFLTQS--SQLYLETCI--P-T-LGDV 200 (435)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESCCS--------SCTTSCCEEEETT-EEEEECSC--SHHHHHHHH--H-H-HCSE
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEeeccC--------CCchhceeeccCC-cccccCCC--hHHHHHHhh--h-c-cCce
Confidence 45778899999999999999999975421 0111222112111 12256655 333222211 0 1 1489
Q ss_pred EEeCcEeecCCCc-ccccccccEEEEEEcCCCCCHHHHHHHHHHHHHH
Q 007872 476 YEVGDVVLLDEKK-DVGASCRRRLAALYCGANSGFELIHCLVDRIMEV 522 (586)
Q Consensus 476 FEiG~V~~~~~~~-~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~~ 522 (586)
||||++|+.++.. .++..|.+++-+=.+. +++.++-.+++.++..
T Consensus 201 feIg~~FR~E~~~t~RH~~EFT~lE~e~af--~d~~d~m~~~E~li~~ 246 (435)
T 2xgt_A 201 FCIAQSYRAEKSRTRRHLAEYAHVEAECPF--ITLDDLMEKIEELVCD 246 (435)
T ss_dssp EEEEEEECCCSSCCTTCCSEEEEEEEEEES--CCHHHHHHHHHHHHHH
T ss_pred EEEecceecCCCCccccccceeEEEEEEec--CCHHHHHHHHHHHHHH
Confidence 9999999865532 2344456666543444 3788877766666543
No 78
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=84.54 E-value=0.96 Score=49.28 Aligned_cols=132 Identities=12% Similarity=0.143 Sum_probs=82.5
Q ss_pred HHHHHHHHHHH-HHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCC-----------------------------
Q 007872 395 LNEFSDLMRLE-IAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNP----------------------------- 443 (586)
Q Consensus 395 ~~~~~~~lr~~-l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP----------------------------- 443 (586)
.+.+.+.+++. +...||+|+.+..|.+.+.....-..+.-.++.+ +...
T Consensus 234 ~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~~~~~~ 313 (522)
T 2cja_A 234 FRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEK 313 (522)
T ss_dssp HHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhccccccccccccc
Confidence 45677778864 7888999999999999886443322111113344 5311
Q ss_pred ccCCchhhcccchHHHHHHHHhccC--CCCCeeEEE-eCcEeecCCCcccc---cccccEEEEEEcCC-C---CCHHHHH
Q 007872 444 RTSDFEVVRTTLMPGILKTIGHNKD--HPKPIKIYE-VGDVVLLDEKKDVG---ASCRRRLAALYCGA-N---SGFELIH 513 (586)
Q Consensus 444 ~s~e~~~lR~sLlpgLL~~l~~N~~--~~~~~~lFE-iG~V~~~~~~~~~g---~~~~~~l~~~~~~~-~---~~f~~ik 513 (586)
+..+--+|||+--+++....+.+.. +..|++++. +|.+|+.+.....| .++..+.-+.+-+. . ..+.++.
T Consensus 314 ~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~F~~pe~s~ee~ee~i 393 (522)
T 2cja_A 314 IAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVWIGTKEEVLKCAEELH 393 (522)
T ss_dssp BCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred cCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEEEeChHHHHHHHHHHH
Confidence 1234458999999998888775533 346999999 99999876221111 24444444333222 1 2345555
Q ss_pred -HHHHHHHHHhCCC
Q 007872 514 -CLVDRIMEVIGTP 526 (586)
Q Consensus 514 -g~le~ll~~lgi~ 526 (586)
...+.++..||++
T Consensus 394 ~~~~~~~l~~LGLp 407 (522)
T 2cja_A 394 DRYMHIFNDILDIE 407 (522)
T ss_dssp HHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHcCCC
Confidence 7778888999997
No 79
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=80.28 E-value=6 Score=44.59 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=31.9
Q ss_pred cCCchhhcccchHHH----HHHHHhccCCCCCeeEEEeCcEeecC
Q 007872 445 TSDFEVVRTTLMPGI----LKTIGHNKDHPKPIKIYEVGDVVLLD 485 (586)
Q Consensus 445 s~e~~~lR~sLlpgL----L~~l~~N~~~~~~~~lFEiG~V~~~~ 485 (586)
...--+|||-..+|+ -+.+..| .+..|+++++||.+|+.+
T Consensus 236 ~~~~~~LRPEtaqg~f~~f~r~~~~~-~~~LP~~~aqiG~~fRnE 279 (693)
T 2zt5_A 236 GNMPGYLRPETAQGIFLNFKRLLEFN-QGKLPFAAAQIGNSFRNE 279 (693)
T ss_dssp SSSEEEECSCSHHHHHTTHHHHHHHT-TTCSCEEEEEEEEEECCC
T ss_pred CCcceeeccccchHHHHHHHHHHHHh-CcCCCEEEEeecceecCC
Confidence 345567999999999 7777777 346899999999999754
No 80
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=77.78 E-value=11 Score=40.55 Aligned_cols=107 Identities=16% Similarity=0.147 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCce-eeCCccCCchhhcccchHHHH-HHHHhccCCCCCe
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAV-VGNPRTSDFEVVRTTLMPGIL-KTIGHNKDHPKPI 473 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~v-l~NP~s~e~~~lR~sLlpgLL-~~l~~N~~~~~~~ 473 (586)
.++.+.+|+.|...||.||-|..|++..- +.+.+.. +.. ....-.||+| |.|. +.+-. ...-
T Consensus 182 s~i~~~ir~~~~~~gF~EV~TPil~~~~~--------~~ga~~f~~~~--~~~~~~L~~S--pql~~k~l~~----~g~~ 245 (487)
T 1eov_A 182 AGVCELFREYLATKKFTEVHTPKLLGAPS--------EGGSSVFEVTY--FKGKAYLAQS--PQFNKQQLIV----ADFE 245 (487)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCS--------SSSSCCCEEEE--TTEEEEECSC--THHHHHHHHH----TTCC
T ss_pred HHHHHHHHHHHHhCCcEEEeCCEEEEecC--------CCCcccceecc--CCccEEcccC--hHHHHHHHHh----cCCC
Confidence 35678889999999999999999987531 1112233 421 1223467744 3332 22211 1236
Q ss_pred eEEEeCcEeecCCCc-ccccccccEEEEEE-cCCCCCHHHHHHHHHHHH
Q 007872 474 KIYEVGDVVLLDEKK-DVGASCRRRLAALY-CGANSGFELIHCLVDRIM 520 (586)
Q Consensus 474 ~lFEiG~V~~~~~~~-~~g~~~~~~l~~~~-~~~~~~f~~ikg~le~ll 520 (586)
|+||||++|+.+... ..+..|..++-+=+ .+ .++.++-.+++.++
T Consensus 246 rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~--~~~~dlm~l~E~ll 292 (487)
T 1eov_A 246 RVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFE--EHYHEVLDTLSELF 292 (487)
T ss_dssp EEEEEEEEECCCCCCCTTCCSEEEEEEEEEECS--SCTHHHHHHHHHHH
T ss_pred ceEEEeccEecCCCCCCccchhhhhhhhhhhhh--cCHHHHHHHHHHHH
Confidence 999999999876542 12223555655411 22 23455555444444
No 81
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=75.69 E-value=8.9 Score=40.94 Aligned_cols=108 Identities=12% Similarity=-0.049 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHCCceEEecccccChHHHHHHcCCCCCCCCceeeCCccCCchhhcccchHHHHHH-HHhccCCCCCee
Q 007872 396 NEFSDLMRLEIAMNGFTEVLTWILCSSKEISTMLNRQTDESTAVVGNPRTSDFEVVRTTLMPGILKT-IGHNKDHPKPIK 474 (586)
Q Consensus 396 ~~~~~~lr~~l~~~Gf~Ev~t~sl~s~~~~~~~l~~~~~~~~~vl~NP~s~e~~~lR~sLlpgLL~~-l~~N~~~~~~~~ 474 (586)
.++.+.+|+.|...||.||-|..|++..- .. +.+..-.|-... ...||.|- .|-.- +.. + --|
T Consensus 160 s~i~~~iR~ff~~~gF~EVeTPiL~~s~~-eG-------g~~~f~~~~~~~-~~~L~~Sp--qL~lq~l~~----g-~~r 223 (456)
T 3m4p_A 160 SEIQWYFRKYYHDNHFTEIQPPTIVKTQC-EG-------GSTLFKLQYFNE-PAYLTQSS--QLYLESVIA----S-LGK 223 (456)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEC--------------CCCCEEEETTE-EEEECSCC--HHHHHTTHH----H-HSS
T ss_pred HHHHHHHHHHHHhCCCEEEeCCeeecCCC-CC-------ccccccccccCC-CcccccCH--HHHHHHHHh----c-cCc
Confidence 46788899999999999999999976431 00 011111111111 12455442 22221 111 1 147
Q ss_pred EEEeCcEeecCCCc-ccccccccEEEEEEcCCCCCHHHHHHHHHHHHH
Q 007872 475 IYEVGDVVLLDEKK-DVGASCRRRLAALYCGANSGFELIHCLVDRIME 521 (586)
Q Consensus 475 lFEiG~V~~~~~~~-~~g~~~~~~l~~~~~~~~~~f~~ikg~le~ll~ 521 (586)
+||||++|+.++.. ..+..|..++-+=.+. +++.++-.+++.++.
T Consensus 224 Vyeig~~FR~E~~~t~rH~pEFtmlE~e~af--~d~~d~m~~~E~li~ 269 (456)
T 3m4p_A 224 SFCMLSSYRAEQSRTVRHLAEYLHLEAELPF--ISFEDLLNHLEDLVC 269 (456)
T ss_dssp EEEEEEEECCCSCCCSSCCSEEEEEEEEEES--CCHHHHHHHHHHHHH
T ss_pred EEEEEhheecCCCCCCcchHHHHHhHHHHhc--CCHHHHHHHHHHHHH
Confidence 99999999865432 2344456666553444 368887766666654
No 82
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=62.76 E-value=9 Score=40.54 Aligned_cols=80 Identities=8% Similarity=0.086 Sum_probs=55.1
Q ss_pred hhhcccCCCeEEEecCCCceEEEeCCCcccCChhHHHhhhccccccccccccccCCCcceEEEeCCCCeeeecCcccCCc
Q 007872 164 HDLDTLQGPFTYEALPPSHINFVPLKQTRDFTADELMEFYKSDLKLKKYLHIIENSPLYPVLYDQNRTVLSLPPIINGAH 243 (586)
Q Consensus 164 ~Dld~i~~p~~y~~~~~~~i~f~~L~~~~~~~~~el~~l~~~~~~l~~y~~i~~~~~~~~VI~D~~~~~lslagIigg~~ 243 (586)
+|++++..|+..+...+++ .|. ++.......++++. +.+.... ..+..|+|++++ ++++++|+--++.
T Consensus 348 ~~~~~~~~~l~vR~r~~Gd-~~~-~g~~g~kklk~~~~----d~kiP~~-----~R~~~pll~~~~-~ii~v~g~~~~~~ 415 (433)
T 1ni5_A 348 IRPPRADEAVSVRFKAPGL-LHI-VGRNGGRKLKKIWQ----ELGVPPW-----LRDTTPLLFYGE-TLIAAAGVFVTQE 415 (433)
T ss_dssp ECCCCTTSCEEEESCCCSE-ECB-TTCSSCEEHHHHHH----HHTCCGG-----GTTSSCEEEETT-EEEEETTTEEBGG
T ss_pred cCcccCCCCEEEEecCCCc-Eee-cCCCCCchHHHHHH----HcCCCHH-----HHCCeeEEEECC-EEEEEeceeecce
Confidence 7888888898888777765 343 55332234455553 4444442 245679999876 6999999988888
Q ss_pred ceeccCCceEEEE
Q 007872 244 SAITLKTKNVFIE 256 (586)
Q Consensus 244 s~It~~T~nI~iE 256 (586)
.+++++|+ +-|+
T Consensus 416 ~~~~~~~~-~~i~ 427 (433)
T 1ni5_A 416 GVAEGENG-VSFV 427 (433)
T ss_dssp GBCSSSCC-EEEE
T ss_pred eccCCCCc-eEEE
Confidence 89999877 4443
No 83
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=29.53 E-value=1.1e+02 Score=23.18 Aligned_cols=53 Identities=21% Similarity=0.292 Sum_probs=32.1
Q ss_pred cCCHHHHHHHHHhcCCeEEEcCCCC------CcceEEEEcCCCCcccCCcchhHhHHHHhhCc
Q 007872 323 SLEAEEVTSLLNRMQLHAERSASGN------NQWNINVLVPPTRSDVLHPCDVMEDVAIAYGY 379 (586)
Q Consensus 323 ~l~~~~i~~~L~~Lg~~~~~~~~~~------~~~~l~V~vP~~R~DI~~~~DliEEIar~yGy 379 (586)
.++..|++++|++.||......+.. +. -.++||..+.| ...-++.-|.+-.|.
T Consensus 4 p~~~~elik~L~~~G~~~~r~~GSH~~~~~~~~--~~~~vP~h~~e--i~~g~lk~Ilkqagl 62 (70)
T 1whz_A 4 PPRPEEVARKLRRLGFVERMAKGGHRLYTHPDG--RIVVVPFHSGE--LPKGTFKRILRDAGL 62 (70)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEETTEEEEECTTS--CEEEEECSSSS--CCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHCCCEEeCCCCCCceEecCCC--CeeEecCCcCc--CCHHHHHHHHHHcCC
Confidence 4678999999999999965432110 01 14667755543 344556666665554
No 84
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=28.15 E-value=51 Score=35.08 Aligned_cols=79 Identities=11% Similarity=0.044 Sum_probs=51.8
Q ss_pred hhhcccchHHHHHHHHhccC--C-CCCeeEEEeCcEeecCC--Ccc-cc---cccccEEEE-EEcCCC---CCHHHHHHH
Q 007872 449 EVVRTTLMPGILKTIGHNKD--H-PKPIKIYEVGDVVLLDE--KKD-VG---ASCRRRLAA-LYCGAN---SGFELIHCL 515 (586)
Q Consensus 449 ~~lR~sLlpgLL~~l~~N~~--~-~~~~~lFEiG~V~~~~~--~~~-~g---~~~~~~l~~-~~~~~~---~~f~~ikg~ 515 (586)
-+|||...||.+-...+.++ + ..|+++.++|.+|+... ... .| .++..+.-+ .++.+. ..|......
T Consensus 147 ~~LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe~~~e~~~~~~~~ 226 (459)
T 3ikl_A 147 GGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRH 226 (459)
T ss_dssp TB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGGHHHHHHHHHHH
T ss_pred ceECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChhHHHHHHHHHHHH
Confidence 59999999999998776654 3 56999999999998753 111 12 134433333 234432 346667778
Q ss_pred HHHHHHHhCCCC
Q 007872 516 VDRIMEVIGTPF 527 (586)
Q Consensus 516 le~ll~~lgi~~ 527 (586)
.+.++..||++.
T Consensus 227 ~~~~~~~LGi~~ 238 (459)
T 3ikl_A 227 RLQWWRKFAMSP 238 (459)
T ss_dssp HHHHHHHHCSSG
T ss_pred HHHHHHHhCCCh
Confidence 888899999963
No 85
>2lxr_A NADH dehydrogenase I subunit E; HP1264, oxidoreductase; NMR {Helicobacter pylori}
Probab=22.07 E-value=56 Score=25.47 Aligned_cols=35 Identities=20% Similarity=0.406 Sum_probs=27.3
Q ss_pred CchhhcccchHHHHHHHHhccCCCC-CeeEEEeCcE
Q 007872 447 DFEVVRTTLMPGILKTIGHNKDHPK-PIKIYEVGDV 481 (586)
Q Consensus 447 e~~~lR~sLlpgLL~~l~~N~~~~~-~~~lFEiG~V 481 (586)
|...|+...++-|.+.+..+...+. -+=+||||+-
T Consensus 5 DLRhLk~~f~~rm~ei~~~~~~~gEV~IFlFEigDF 40 (76)
T 2lxr_A 5 DLRPLKAGIFERLEELIEKEMQPNEVAIFMFEVGDF 40 (76)
T ss_dssp ECGGGTTTTHHHHHHHHHTTSCTTCEEEEEECSSCC
T ss_pred chhhhHHHHHHHHHHHHHhccCCCcEEEEEEEecCc
Confidence 3456677788889999988877665 4999999984
No 86
>3fn2_A Putative sensor histidine kinase domain; GUT microbiome, structural genomics protein structure initiative; HET: MSE; 1.90A {Clostridium symbiosum atcc 14940}
Probab=20.68 E-value=78 Score=26.36 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=20.4
Q ss_pred cceEEEeCCCCeeeecCcccCCccee
Q 007872 221 LYPVLYDQNRTVLSLPPIINGAHSAI 246 (586)
Q Consensus 221 ~~~VI~D~~~~~lslagIigg~~s~I 246 (586)
.+++|+|+.|+++.-|++.-+.++.|
T Consensus 50 ~~lrI~D~~G~vi~~~~~~a~~~~~v 75 (106)
T 3fn2_A 50 GYVRITDKDGQVITYEDGSVQDKTVF 75 (106)
T ss_dssp CEEEEECTTSCBCSCCCSCSTTEEEE
T ss_pred CcEEEEcCCCCEEecCCCCcCcceee
Confidence 56999999999888888876655443
Done!