BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007873
(586 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/489 (67%), Positives = 384/489 (78%)
Query: 85 LNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELK 144
+N++FVG E+APWSKT HRVM I+PRYDQYKDAWDT VV E+K
Sbjct: 10 MNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIK 69
Query: 145 VGDKIEKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLC 204
V D+ E+VRFFHC+KRGVDRVF+DHP FL KVWGKT KIYGP TG DY+DNQ+RFSLLC
Sbjct: 70 VADRYERVRFFHCYKRGVDRVFIDHPSFLEKVWGKTGEKIYGPDTGVDYKDNQMRFSLLC 129
Query: 205 QAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFC 264
QAALEAPRILNLN+N YF G YGEDVVFV NDWHT + YLK Y+P G+Y++AKV FC
Sbjct: 130 QAALEAPRILNLNNNPYFKGTYGEDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFC 189
Query: 265 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324
IHNI+YQGRFAFED+ LNL +F+SSFDFIDGY+ PV GRKINWMKAGILE+D VLTVS
Sbjct: 190 IHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKINWMKAGILEADRVLTVS 249
Query: 325 PHYAQELVSGEDKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKP 384
P+YA+EL+SG +G ELDNI+R TGI GIVNGMDV EW+P DKYI KYDA+T ++AK
Sbjct: 250 PYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKA 309
Query: 385 LLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKKPM 444
L KEALQAE GLPVDR IP+I FIGRLEEQKG D++AAAIP ++E+VQI++LGTGKK
Sbjct: 310 LNKEALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKF 369
Query: 445 EKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPI 504
EK L+ +E YP K R V KFN PLAH+I+AGAD + +PSRFEPCGLIQL MRYGT
Sbjct: 370 EKLLKSMEEKYPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCA 429
Query: 505 VASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKN 564
ASTGGLVDTV EG TGF MG SVDC+ V+P DV V+ T++RA+ GT A EM++N
Sbjct: 430 CASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVGTPAYEEMVRN 489
Query: 565 GMAQDLSWK 573
M QDLSWK
Sbjct: 490 CMNQDLSWK 498
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
Length = 485
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 160/497 (32%), Positives = 242/497 (48%), Gaps = 35/497 (7%)
Query: 85 LNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELK 144
+N+L V +E+ P KT R T+ P Y K A TD V +
Sbjct: 1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAV-TDPVKCFE 59
Query: 145 VGDKI-EKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLL 203
D + EK +D + +D P + + G Y +TG+DY DN RF+ L
Sbjct: 60 FTDLLGEKADLLEVQHERLDLLILDAPAYYERSGGP-----YLGQTGKDYPDNWKRFAAL 114
Query: 204 CQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVF 263
+L A RI G + D+V A+DW ++ P Y++ P+ +
Sbjct: 115 ---SLAAARI----GAGVLPG-WRPDMVH-AHDWQAAMTPVYMRYAETPE-----IPSLL 160
Query: 264 CIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTV 323
IHNIA+QG+F F L LPA + I+ YN ++++K G+ + + TV
Sbjct: 161 TIHNIAFQGQFGANIFSKLALPAH-AFGMEGIEYYND------VSFLKGGLQTATALSTV 213
Query: 324 SPHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMD 381
SP YA+E+++ E G+ L+ +I R + GIVNG+D WNP TD I Y A+ + +
Sbjct: 214 SPSYAEEILTAE-FGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKN 272
Query: 382 AKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGK 441
+ L K+A+ + D P+ I RL QKG D++A A+ + +++VLG G
Sbjct: 273 -RALNKKAVAEHFRID-DDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGD 330
Query: 442 KPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGT 501
+E L + + +N PL+H++ AG D I+IPSRFEPCGL QL+A+RYG
Sbjct: 331 VALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGC 390
Query: 502 VPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AE 560
+P+VA TGGL DTV + + S + PV + + +RR + Y L +
Sbjct: 391 IPVVARTGGLADTVIDA-NHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQ 449
Query: 561 MMKNGMAQDLSWKVSIG 577
M K GM D+SW+ S G
Sbjct: 450 MQKLGMKSDVSWEKSAG 466
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 131/398 (32%), Positives = 200/398 (50%), Gaps = 38/398 (9%)
Query: 193 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKP 252
Y DN LRF+LL E L+ P+ V A+DWH L P YL +P
Sbjct: 103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP 153
Query: 253 KGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKA 312
AK VF +HN+AYQG F + LP + F + + G +I+++KA
Sbjct: 154 ------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKA 200
Query: 313 GILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKY 369
G+ +D + VSP YA+E+ + G+E L R+ + G++NG+D + W+P TD
Sbjct: 201 GLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLL 260
Query: 370 IGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK 429
+ +Y T+ D K K LQ +GL VD +P+ + RL QKG D++ A+P ++
Sbjct: 261 LASRYTRDTLED-KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE 319
Query: 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPC 489
+ Q+ +LG G +++ YP + ++ +H I+ GAD IL+PSRFEPC
Sbjct: 320 QGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPC 379
Query: 490 GLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVST 544
GL QL+ ++YGT+P+V TGGL DTV E G G D A ++
Sbjct: 380 GLTQLYGLKYGTLPLVRRTGGLADTVSDSSLENLADGVASGFVFEDSNAW------SLLR 433
Query: 545 TVRRALATYGTQALAEMM-KNGMAQDLSWKVSIGTVQE 581
+RRA + +L + + MA D SW+V+ + +E
Sbjct: 434 AIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRE 471
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 199 bits (507), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 131/398 (32%), Positives = 200/398 (50%), Gaps = 38/398 (9%)
Query: 193 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKP 252
Y DN LRF+LL E L+ P+ V A+DWH L P YL +P
Sbjct: 103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP 153
Query: 253 KGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKA 312
AK VF +HN+AYQG F + LP + F + + G +I+++KA
Sbjct: 154 ------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKA 200
Query: 313 GILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKY 369
G+ +D + VSP YA+E+ + G+E L R+ + G++NG+D + W+P TD
Sbjct: 201 GLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLL 260
Query: 370 IGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK 429
+ +Y T+ D K K LQ +GL VD +P+ + RL QKG D++ A+P ++
Sbjct: 261 LASRYTRDTLED-KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE 319
Query: 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPC 489
+ Q+ +LG G +++ YP + ++ +H I+ GAD IL+PSRFEPC
Sbjct: 320 QGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPC 379
Query: 490 GLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVST 544
GL QL+ ++YGT+P+V TGGL DTV E G G D A ++
Sbjct: 380 GLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAW------SLLR 433
Query: 545 TVRRALATYGTQALAEMM-KNGMAQDLSWKVSIGTVQE 581
+RRA + +L + + MA D SW+V+ + +E
Sbjct: 434 AIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRE 471
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 130/398 (32%), Positives = 199/398 (50%), Gaps = 38/398 (9%)
Query: 193 YQDNQLRFSLLCQAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKP 252
Y DN LRF+LL E L+ P+ V A+DWH L P YL +P
Sbjct: 103 YTDNVLRFALLGWVGAEMASGLD---------PFWRPDVVHAHDWHAGLAPAYLAARGRP 153
Query: 253 KGMYKSAKVVFCIHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKA 312
AK VF +HN+AYQG F + LP + F + + G +I+++KA
Sbjct: 154 ------AKSVFTVHNLAYQGMFYAHHMNDIQLP------WSFFNIHGLEFNG-QISFLKA 200
Query: 313 GILESDMVLTVSPHYAQELVSGE-DKGVE--LDNIIRKTGIKGIVNGMDVQEWNPLTDKY 369
G+ +D + VSP YA+E+ + G+E L R+ + G++NG+D + W+P TD
Sbjct: 201 GLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLL 260
Query: 370 IGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIK 429
+ +Y T+ D K K LQ +GL VD +P+ + RL QKG D++ A+P ++
Sbjct: 261 LASRYTRDTLED-KAENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE 319
Query: 430 ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPC 489
+ Q+ +LG G +++ YP + ++ +H I+ GAD IL+PSRF PC
Sbjct: 320 QGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFAPC 379
Query: 490 GLIQLHAMRYGTVPIVASTGGLVDTV-----EEGFTGFQMGSFSVDCEAVDPVDVAAVST 544
GL QL+ ++YGT+P+V TGGL DTV E G G D A ++
Sbjct: 380 GLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAW------SLLR 433
Query: 545 TVRRALATYGTQALAEMM-KNGMAQDLSWKVSIGTVQE 581
+RRA + +L + + MA D SW+V+ + +E
Sbjct: 434 AIRRAFVLWSRPSLWRFVQRQAMAMDFSWQVAAKSYRE 471
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
Length = 485
Score = 195 bits (496), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 158/496 (31%), Positives = 233/496 (46%), Gaps = 35/496 (7%)
Query: 86 NILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKDAWDTDVVIELKV 145
N+L V +E+ P KT R T+ P Y K A TD V +
Sbjct: 2 NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAV-TDPVKCFEF 60
Query: 146 GDKI-EKVRFFHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLC 204
D + EK +D + +D P + + G Y +TG+DY DN RF+ L
Sbjct: 61 TDLLGEKADLLEVQHERLDLLILDAPAYYERSGGP-----YLGQTGKDYPDNWKRFAAL- 114
Query: 205 QAALEAPRILNLNSNKYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSAKVVFC 264
+L A RI G + D V A+DW + P Y + P+ +
Sbjct: 115 --SLAAARI----GAGVLPG-WRPDXVH-AHDWQAAXTPVYXRYAETPE-----IPSLLT 161
Query: 265 IHNIAYQGRFAFEDFGLLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVS 324
IHNIA+QG+F F L LPA + I+ YN ++++K G+ + + TVS
Sbjct: 162 IHNIAFQGQFGANIFSKLALPAH-AFGXEGIEYYND------VSFLKGGLQTATALSTVS 214
Query: 325 PHYAQELVSGEDKGVELDNII--RKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDA 382
P YA+E+++ E G L+ +I R + GIVNG+D WNP TD I Y A+ + +
Sbjct: 215 PSYAEEILTAE-FGXGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKN- 272
Query: 383 KPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGTGKK 442
+ L K+A+ + D P+ I RL QKG D+ A A+ + +++VLG G
Sbjct: 273 RALNKKAVAEHFRID-DDGSPLFCVISRLTWQKGIDLXAEAVDEIVSLGGRLVVLGAGDV 331
Query: 443 PMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTV 502
+E L + + +N PL+H+ AG D I+IPSRFEPCGL QL+A+RYG +
Sbjct: 332 ALEGALLAAASRHHGRVGVAIGYNEPLSHLXQAGCDAIIIPSRFEPCGLTQLYALRYGCI 391
Query: 503 PIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQAL-AEM 561
P+VA TGGL DTV + + S + PV + + +RR + Y L +
Sbjct: 392 PVVARTGGLADTVIDA-NHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDPKLWTQX 450
Query: 562 MKNGMAQDLSWKVSIG 577
K G D+SW+ S G
Sbjct: 451 QKLGXKSDVSWEKSAG 466
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 114/288 (39%), Gaps = 54/288 (18%)
Query: 235 NDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIH--NIAYQGRFAFEDFGLLNLPAQFKSSF 292
+DWHT +K +K VF IH N + F F + GL L
Sbjct: 130 HDWHTVFAGALIKKYFK-------IPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDIDP 182
Query: 293 DFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG 352
+ GY +D+V TVS Y D+ N K I
Sbjct: 183 EHTGGYI-----------------ADIVTTVSRGYLI------DEWGFFRNFEGK--ITY 217
Query: 353 IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLE 412
+ NG+D WN S + ++ K++L ++ G+ D + + FIGR +
Sbjct: 218 VFNGIDCSFWNE------------SYLTGSRDERKKSLLSKFGM--DEGVTFM-FIGRFD 262
Query: 413 E-QKGSDILAAAIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI 467
QKG D+L AI + ++ I++G G +E LE + +
Sbjct: 263 RGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSR 322
Query: 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 515
+ DF++IPS FEP GL+ L AM G +PI ++ GGL D +
Sbjct: 323 EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII 370
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 114/288 (39%), Gaps = 54/288 (18%)
Query: 235 NDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIH--NIAYQGRFAFEDFGLLNLPAQFKSSF 292
+DWHT +K +K VF IH N + F F + GL L
Sbjct: 129 HDWHTVFAGALIKKYFK-------IPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDIDP 181
Query: 293 DFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG 352
+ GY +D+V TVS Y D+ N K I
Sbjct: 182 EHTGGYI-----------------ADIVTTVSRGYLI------DEWGFFRNFEGK--ITY 216
Query: 353 IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLE 412
+ NG+D WN S + ++ K++L ++ G+ D + + FIGR +
Sbjct: 217 VFNGIDCSFWNE------------SYLTGSRDERKKSLLSKFGM--DEGVTFM-FIGRFD 261
Query: 413 E-QKGSDILAAAIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI 467
QKG D+L AI + ++ I++G G +E LE + +
Sbjct: 262 RGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSR 321
Query: 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 515
+ DF++IPS FEP GL+ L AM G +PI ++ GGL D +
Sbjct: 322 EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII 369
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 114/288 (39%), Gaps = 54/288 (18%)
Query: 235 NDWHTSLIPCYLKTMYKPKGMYKSAKVVFCIH--NIAYQGRFAFEDFGLLNLPAQFKSSF 292
+DWHT +K +K VF IH N + F F + GL L
Sbjct: 129 HDWHTVFAGALIKKYFK-------IPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDIDP 181
Query: 293 DFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVELDNIIRKTGIKG 352
+ GY +D+V TVS Y D+ N K I
Sbjct: 182 EHTGGYI-----------------ADIVTTVSRGYLI------DEWGFFRNFEGK--ITY 216
Query: 353 IVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLE 412
+ NG+D WN S + ++ K++L ++ G+ D + + FIGR +
Sbjct: 217 VFNGIDCSFWN------------ESYLTGSRDERKKSLLSKFGM--DEGVTFM-FIGRFD 261
Query: 413 E-QKGSDILAAAIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNI 467
QKG D+L AI + ++ I++G G +E LE + +
Sbjct: 262 RGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSR 321
Query: 468 PLAHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 515
+ DF++IPS FEP GL+ L AM G +PI ++ GGL D +
Sbjct: 322 EFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII 369
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 355 NGMDVQEWNPLTDKYIGVKYDASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEE- 413
NG+D WN S + ++ K++L ++ G+ D + + FIGR +
Sbjct: 4 NGIDCSFWNE------------SYLTGSRDERKKSLLSKFGM--DEGVTFM-FIGRFDRG 48
Query: 414 QKGSDILAAAIPHFIK----ENVQIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPL 469
QKG D+L AI + ++ I++G G +E LE + +
Sbjct: 49 QKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREF 108
Query: 470 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTV 515
+ DF++IPS FEP GL+ L AM G +PI ++ GGL D +
Sbjct: 109 VRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII 154
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 32/160 (20%)
Query: 388 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE----NVQIIVLGTGKKP 443
E + E+G+P+ + V+ F+GRL+ KG +L A+ N+++I+ G P
Sbjct: 211 ERSRRELGIPL--HTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGP 268
Query: 444 ---------------MEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEP 488
+EK++ L+ P + V + AD + +PS E
Sbjct: 269 NATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYR-----------AADIVAVPSFNES 317
Query: 489 CGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFS 528
GL+ + A GT I A GGL V EG TG + S
Sbjct: 318 FGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHS 357
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 32/160 (20%)
Query: 388 EALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFIKE----NVQIIVLGTGKKP 443
E + E+G+P+ + V+ F+GRL+ KG +L A+ N+++I+ G P
Sbjct: 231 ERSRRELGIPL--HTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGP 288
Query: 444 ---------------MEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEP 488
+EK++ L+ P + V + AD + +PS E
Sbjct: 289 NATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYR-----------AADIVAVPSFNES 337
Query: 489 CGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFS 528
GL+ + A GT I A GGL V EG TG + S
Sbjct: 338 FGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHS 377
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 16/166 (9%)
Query: 375 DASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI--KENV 432
D A P K A + ++G PVI RL +KG D L A+P I + +
Sbjct: 173 DVKRFTPATPEDKSATRKKLGF--TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDA 230
Query: 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSR------- 485
Q++++G+G+ E L +L + + + + +A AD +P+R
Sbjct: 231 QLLIVGSGR--YESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLD 288
Query: 486 FEPCGLIQLHAMRYGTVPIVAST-GGLVDTVEEGFTGFQMGSFSVD 530
E G++ L A G VP++A T GG +TV TG + VD
Sbjct: 289 VEGLGIVYLEAQACG-VPVIAGTSGGAPETVTPA-TGLVVEGSDVD 332
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 16/166 (9%)
Query: 375 DASTVMDAKPLLKEALQAEVGLPVDRNIPVIGFIGRLEEQKGSDILAAAIPHFI--KENV 432
D A P K A + ++G PVI RL +KG D L A+P I + +
Sbjct: 173 DVKRFTPATPEDKSATRKKLGF--TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDA 230
Query: 433 QIIVLGTGKKPMEKQLEQLEILYPEKARGVAKFNIPLAHMIIAGADFILIPSR------- 485
Q++++G+G+ E L +L + + + + +A AD +P+R
Sbjct: 231 QLLIVGSGR--YESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLD 288
Query: 486 FEPCGLIQLHAMRYGTVPIVAST-GGLVDTVEEGFTGFQMGSFSVD 530
E G++ L A G VP++A T GG +TV TG + VD
Sbjct: 289 VEGLGIVYLEAQACG-VPVIAGTSGGAPETVTPA-TGLVVEGSDVD 332
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 473 IIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCE 532
++A +D +L+ S E GL+ L AM G I GG+ + ++ G TG+ CE
Sbjct: 301 LLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYL-------CE 353
Query: 533 AVDPVDVA 540
D VA
Sbjct: 354 VGDTTGVA 361
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 473 IIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCE 532
++A +D +L+ S E GL+ L AM G I GG+ + ++ G TG+ CE
Sbjct: 281 LLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYL-------CE 333
Query: 533 AVDPVDVA 540
D VA
Sbjct: 334 VGDTTGVA 341
>pdb|2F2L|X Chain X, Crystal Structure Of Tracheal Cytotoxin (Tct) Bound To The
Ectodomain Complex Of Peptidoglycan Recognition Proteins
Lca (Pgrp-Lca) And Lcx (Pgrp-Lcx)
Length = 167
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 404 VIGFIGRLEEQKGSDILAAAIPHFIKENVQIIVLGT--GKKPMEKQLEQLEILYPEKAR 460
++G GR+ E +G D + A + + ++ I +GT +KP E+QLE ++L E R
Sbjct: 69 LVGGDGRVYEGRGWDYVGAHTKGYNRGSIGISFIGTFTTRKPNERQLEACQLLLQEGVR 127
>pdb|1OKB|A Chain A, Crystal Structure Of Uracil-Dna Glycosylase From Atlantic
Cod (Gadus Morhua)
pdb|1OKB|B Chain B, Crystal Structure Of Uracil-Dna Glycosylase From Atlantic
Cod (Gadus Morhua)
Length = 223
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 295 IDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVE--LDNIIR 346
IDG+ P G W K G+L + VLTV H A S +D+G E D +I+
Sbjct: 100 IDGFKHPGHGDLSGWAKQGVLLLNAVLTVRAHQAN---SHKDRGWETFTDAVIK 150
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 470 AHMIIAGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSV 529
A++ G+ F L S +EP GL + AM G +V GG + ++ G G
Sbjct: 353 AYLASKGSVFALT-SFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGV------- 404
Query: 530 DCEAVDPVDVAAVSTTVRRALATYGT-QALAEMMKNGMAQDLSWK 573
VDP D ++ + +A + T A E K + + +W+
Sbjct: 405 ---LVDPEDPEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQ 446
>pdb|3SDY|L Chain L, Crystal Structure Of Broadly Neutralizing Antibody Cr8020
Bound To The Influenza A H3 Hemagglutinin
Length = 216
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 475 AGADFILIPSRFEPCGLIQLHAMRYGTVPIVASTGGLVD 513
+G DF L SR EP + +YGT P G V+
Sbjct: 69 SGTDFTLTISRLEPADFAVYYCQQYGTSPRTFGQGAKVE 107
>pdb|1FLZ|A Chain A, Uracil Dna Glycosylase With Uaap
Length = 228
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 88 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 144
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 368
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 145 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 176
>pdb|1EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
Glycosylase And Its Complexes With Uracil And Glycerol:
Structure And Glycosylase Mechanism Revisited
Length = 229
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 368
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|2EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
Glycosylase And Its Complexes With Uracil And Glycerol:
Structure And Glycosylase Mechanism Revisited
pdb|3EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
Glycosylase And Its Complexes With Uracil And Glycerol:
Structure And Glycosylase Mechanism Revisited
Length = 229
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 368
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|4EUG|A Chain A, Crystallographic And Enzymatic Studies Of An Active Site
Variant H187q Of Escherichia Coli Uracil Dna
Glycosylase: Crystal Structures Of Mutant H187q And Its
Uracil Complex
pdb|5EUG|A Chain A, Crystallographic And Enzymatic Studies Of An Active Site
Variant H187q Of Escherichia Coli Uracil Dna
Glycosylase: Crystal Structures Of Mutant H187q And Its
Uracil Complex
Length = 229
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 368
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|3UF7|A Chain A, Co-Crystal Structure Of Escherichia Coli Uracil-Dna
Glycosylase And A C-Terminal Fragement Of The
Single-Stranded Dna-Binding Protein
Length = 237
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 368
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|2UUG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With H187d Mutant Udg And Wild-Type Ugi
pdb|2UUG|B Chain B, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With H187d Mutant Udg And Wild-Type Ugi
Length = 229
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDKYIGVKYDASTVMDAKPL 385
DK + L N R+ G+ ++ G Q+ + DK ++ D PL
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDKQ---RHHVLKAPDPSPL 191
>pdb|1UUG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With Wild-Type Udg And Wild-Type Ugi
pdb|1UUG|C Chain C, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With Wild-Type Udg And Wild-Type Ugi
pdb|1LQG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQG|B Chain B, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQJ|A Chain A, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQJ|B Chain B, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQJ|C Chain C, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQJ|D Chain D, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQM|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQM|C Chain C, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQM|E Chain E, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQM|G Chain G, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
Length = 229
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 89 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 145
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 368
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 146 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 177
>pdb|1EUI|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1EUI|B Chain B, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
Length = 228
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 281 LLNLPAQFKSSFDFIDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVS-----GE 335
LLN+ +K + I G+ +P G +W + G+L + VLTV A S
Sbjct: 88 LLNM---YKELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFT 144
Query: 336 DKGVELDNIIRKTGIKGIVNGMDVQEWNPLTDK 368
DK + L N R+ G+ ++ G Q+ + DK
Sbjct: 145 DKVISLINQHRE-GVVFLLWGSHAQKKGAIIDK 176
>pdb|2VDD|A Chain A, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDD|B Chain B, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDD|C Chain C, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDE|A Chain A, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDE|B Chain B, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
pdb|2VDE|C Chain C, Crystal Structure Of The Open State Of Tolc Outer Membrane
Component Of Mutlidrug Efflux Pumps
Length = 460
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 505 VASTGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKN 564
V S +D +E GF SV E + VDV +TT+ A Q LA N
Sbjct: 370 VVSAQSSLDAMEAGF--------SVGTETI--VDVLDATTTLYNA-----KQELANARYN 414
Query: 565 GMAQDLSWKVSIGTVQEEDSL 585
+ L+ K ++GT+ E+D L
Sbjct: 415 YLINQLNIKSALGTLNEQDLL 435
>pdb|3TKB|A Chain A, Crystal Structure Of Human Uracil-Dna Glycosylase
D183gK302R MUTANT
Length = 223
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 295 IDGYNKPVRGRKINWMKAGILESDMVLTVSPHYAQELVSGEDKGVE 340
I+G+ P G W K G+L + VLTV H A S +++G E
Sbjct: 100 IEGFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQAN---SHKERGWE 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,918,759
Number of Sequences: 62578
Number of extensions: 715890
Number of successful extensions: 1526
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1478
Number of HSP's gapped (non-prelim): 33
length of query: 586
length of database: 14,973,337
effective HSP length: 104
effective length of query: 482
effective length of database: 8,465,225
effective search space: 4080238450
effective search space used: 4080238450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)